Citrus Sinensis ID: 044044
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 508 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SXD1 | 630 | Pentatricopeptide repeat- | yes | no | 0.842 | 0.679 | 0.359 | 1e-87 | |
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.891 | 0.752 | 0.349 | 1e-87 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.832 | 0.656 | 0.375 | 1e-86 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.814 | 0.658 | 0.370 | 3e-86 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.840 | 0.689 | 0.367 | 8e-85 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.846 | 0.680 | 0.351 | 2e-84 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.814 | 0.674 | 0.355 | 5e-84 | |
| Q0WKV3 | 637 | Pentatricopeptide repeat- | no | no | 0.820 | 0.654 | 0.370 | 5e-84 | |
| Q9ASZ8 | 621 | Pentatricopeptide repeat- | no | no | 0.852 | 0.697 | 0.364 | 7e-84 | |
| Q9CAM8 | 629 | Pentatricopeptide repeat- | no | no | 0.846 | 0.683 | 0.351 | 1e-83 |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 324 bits (831), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 170/473 (35%), Positives = 272/473 (57%), Gaps = 45/473 (9%)
Query: 71 KERCKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLF 130
+E+ +G ++ L ++A+ +F M++ P P + F+ L +AK +D V+SL
Sbjct: 49 REKLSRNGLSELKL---DDAVALFGEMVKSRPFPSIIE-FSKLLSAIAKMNKFDVVISLG 104
Query: 131 KRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAE 190
+++ + G+ + YT+SILINCFC+ ++ VLG++++ + PN VT +SL+ G C
Sbjct: 105 EQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHS 164
Query: 191 SRIMEAAALFTK-----------------HRVF------------------ACEPDVFTY 215
RI EA AL + H +F C+PD+ TY
Sbjct: 165 KRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTY 224
Query: 216 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKEL 275
++NGLC+ G T +A NL +M G E P + YNTIIDGLCK +D A L
Sbjct: 225 GVVVNGLCKRGDTDLAFNLLNKMEQGKLE------PGVLIYNTIIDGLCKYKHMDDALNL 278
Query: 276 FLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCK 335
F +M+ + I P+VVTY+S+I C W++A RL +M+++ + PDV TFS ++D K
Sbjct: 279 FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 338
Query: 336 NGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVS 395
GK+ +A +L + M+ R ++P+ TY++LI+G+C+ D++D A+++F M S C DVV+
Sbjct: 339 EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVT 398
Query: 396 YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMR 455
YNTLI +CK K VEE + ++ EM +G+ VTYN L GLF+ + A ++F EM
Sbjct: 399 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMV 458
Query: 456 RNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508
+ V + TYN +DGLCK+G + +A+ +F ++ SK E I +YN +I+G+
Sbjct: 459 SDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 511
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (830), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 171/489 (34%), Positives = 274/489 (56%), Gaps = 36/489 (7%)
Query: 20 LRCNFSSSFPHTRKPTSSISENEPSYPTTTSKLKESLRLTVKDRASLKKFLKERCKSSGQ 79
L C SS F + SSIS + +E LR + D
Sbjct: 31 LLCTISSFFSSCERDFSSISNGNVCF-------RERLRSGIVD----------------- 66
Query: 80 GDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLF 139
I ++A+ +F M+R P P V F+ F +A+ K ++ VL K+L G+
Sbjct: 67 -----IKKDDAIALFQEMIRSRPLPSLVD-FSRFFSAIARTKQFNLVLDFCKQLELNGIA 120
Query: 140 PDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAAL 199
+IYT +I+INCFC+ + + VLG++++ + P+ TF +LIKGL E ++ EA L
Sbjct: 121 HNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVL 180
Query: 200 FTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTI 259
+ C+PDV TYN+++NG+CR+G T +AL+L +M N K + TY+TI
Sbjct: 181 VDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN------VKADVFTYSTI 234
Query: 260 IDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 319
ID LC++G +D A LF +M+ + I VVTY S++RG C A WN+ L +M+ + +
Sbjct: 235 IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREI 294
Query: 320 QPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARK 379
P+V+TF+V++D K GK+ +A+ L + MI RG++PN TYNTL+DGYC+ +++ A
Sbjct: 295 VPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANN 354
Query: 380 LFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF 439
+ M N C D+V++ +LI YC K V++ + ++ + +G+ VTY+ L G
Sbjct: 355 MLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFC 414
Query: 440 EIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIV 499
+ +++ A +LF EM + V D TY +DGLC +G + +ALE+F ++ SK +L IV
Sbjct: 415 QSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIV 474
Query: 500 SYNCLIDGL 508
Y +I+G+
Sbjct: 475 MYTTIIEGM 483
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 320 bits (820), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 170/453 (37%), Positives = 261/453 (57%), Gaps = 30/453 (6%)
Query: 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYT 144
I ++A+ +F M++ P P V FN LF +AK K Y+ VL+L K++ S G+ IYT
Sbjct: 67 IKADDAVDLFRDMIQSRP-LPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYT 125
Query: 145 HSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHR 204
SI+INCFC+ ++S+ F +G+I++ + P+ V F +L+ GLC E R+ EA L +
Sbjct: 126 LSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMV 185
Query: 205 VFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE---------FGVVCKP---- 251
+P + T NTL+NGLC G A+ L + M + V+CK
Sbjct: 186 EMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTA 245
Query: 252 ----------------NTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVI 295
+ V Y+ IIDGLCK+G +D A LF +M+ + D++TY ++I
Sbjct: 246 LAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLI 305
Query: 296 RGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVN 355
GFC A W++ +L +M+ + + P+VVTFSV++D K GK+ +A +LL+ M+ RG+
Sbjct: 306 GGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIA 365
Query: 356 PNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSL 415
PNT TYN+LIDG+C ++++ A ++ M S GC D++++N LIN YCK +++ L L
Sbjct: 366 PNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLEL 425
Query: 416 YSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCK 475
+ EM +G+ VTYNTL G + ++E A KLF EM V D +Y +DGLC
Sbjct: 426 FREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCD 485
Query: 476 SGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508
+G + +ALE+F I SK EL+I Y +I G+
Sbjct: 486 NGELEKALEIFGKIEKSKMELDIGIYMIIIHGM 518
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 319 bits (817), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 169/456 (37%), Positives = 266/456 (58%), Gaps = 42/456 (9%)
Query: 88 NEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSI 147
++A+ +F M++ P P V FN L +AK +D V+SL +R+ + + D+Y+++I
Sbjct: 62 DDAVDLFGEMVQSRPLPSIVE-FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120
Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTK----- 202
LINCFC+ ++ VLG++++ + P+ VT +SL+ G C RI EA AL +
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180
Query: 203 ------------HRVF------------------ACEPDVFTYNTLINGLCRTGHTIVAL 232
H +F C+PD+FTY T++NGLC+ G +AL
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240
Query: 233 NLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 292
+L ++M G E + V Y TIID LC V+ A LF +M ++ I P+VVTY
Sbjct: 241 SLLKKMEKGKIE------ADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYN 294
Query: 293 SVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWR 352
S+IR C W++A RL +M+++ + P+VVTFS ++D K GK+ +A +L + MI R
Sbjct: 295 SLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 354
Query: 353 GVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEA 412
++P+ +TY++LI+G+C+ D++D A+ +F M S C +VV+YNTLI +CK K VEE
Sbjct: 355 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEG 414
Query: 413 LSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDG 472
+ L+ EM +G+ VTYNTL GLF+ + A K+F +M + V D TY+ +DG
Sbjct: 415 MELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 474
Query: 473 LCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508
LCK G + +AL +F ++ SK E +I +YN +I+G+
Sbjct: 475 LCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGM 510
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 314 bits (805), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 174/473 (36%), Positives = 265/473 (56%), Gaps = 46/473 (9%)
Query: 71 KERCKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLF 130
KER ++ G DI + N+A+ +F+ M++ P P P+ FN L +A+ K YD VL
Sbjct: 39 KERLRN-GIVDIKV---NDAIDLFESMIQSRPLPTPID-FNRLCSAVARTKQYDLVLGFC 93
Query: 131 KRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAE 190
K + G+ D+YT +I+INC+C+ ++ F VLGR + + P+ +TF++L+ G C E
Sbjct: 94 KGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLE 153
Query: 191 SRIMEAAALFTKHRVFACEPDVFTYNTLINGLC--------------------------- 223
R+ EA AL + PD+ T +TLINGLC
Sbjct: 154 GRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTY 213
Query: 224 --------RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKEL 275
++G++ +AL+LF +M N K + V Y+ +ID LCK+G D A L
Sbjct: 214 GPVLNRLCKSGNSALALDLFRKMEERN------IKASVVQYSIVIDSLCKDGSFDDALSL 267
Query: 276 FLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCK 335
F +M+ + I DVVTY+S+I G C W++ ++ EM+ + + PDVVTFS ++D K
Sbjct: 268 FNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 327
Query: 336 NGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVS 395
GK+ +A L MI RG+ P+T TYN+LIDG+C + + A ++F M S GC D+V+
Sbjct: 328 EGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVT 387
Query: 396 YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMR 455
Y+ LIN YCK K V++ + L+ E+ SKG+ P +TYNTL LG + ++ A +LF EM
Sbjct: 388 YSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMV 447
Query: 456 RNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508
V TY +DGLC +G + +ALE+F ++ S+ L I YN +I G+
Sbjct: 448 SRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGM 500
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 313 bits (802), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 169/481 (35%), Positives = 272/481 (56%), Gaps = 51/481 (10%)
Query: 72 ERCKSSGQGDI---------NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKH 122
ER +S GD ++I ++A+ +F M++ P P V FN L +AK
Sbjct: 40 ERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVE-FNKLLSAVAKMNK 98
Query: 123 YDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 182
++ V+SL +++ + G+ D+YT+SI INCFC+ ++S VL ++++ + P+ VT +S
Sbjct: 99 FELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158
Query: 183 LIKGLCAESRIMEAAALFTK-----------------HRVF------------------A 207
L+ G C RI +A AL + H +F
Sbjct: 159 LLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG 218
Query: 208 CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG 267
C+PD+ TY T++NGLC+ G +AL+L ++M G E + V YNTIIDGLCK
Sbjct: 219 CQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE------ADVVIYNTIIDGLCKYK 272
Query: 268 FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFS 327
+D A LF +M ++ I PDV TY+S+I C W++A RL +M+++ + P+VVTFS
Sbjct: 273 HMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFS 332
Query: 328 VIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESN 387
++D K GK+ +A +L + MI R ++P+ +TY++LI+G+C+ D++D A+ +F M S
Sbjct: 333 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 392
Query: 388 GCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERA 447
C +VV+Y+TLI +CK K VEE + L+ EM +G+ VTY TL G F+ + A
Sbjct: 393 DCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNA 452
Query: 448 LKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDG 507
+F +M V + TYN +DGLCK+G + +A+ +F ++ S E +I +YN +I+G
Sbjct: 453 QMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEG 512
Query: 508 L 508
+
Sbjct: 513 M 513
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 312 bits (799), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 162/456 (35%), Positives = 262/456 (57%), Gaps = 42/456 (9%)
Query: 88 NEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSI 147
+EA+ +F M++ P P V F+ L +AK K +D V+S +++ G+ ++YT++I
Sbjct: 47 DEAVDLFGEMVKSRPFPSIVE-FSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNI 105
Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTK----- 202
+INC C+ ++S +LG++++ + P+ VT SL+ G C +RI EA AL +
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165
Query: 203 ------------HRVF------------------ACEPDVFTYNTLINGLCRTGHTIVAL 232
H +F C+PD+ TY +INGLC+ G +AL
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 225
Query: 233 NLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 292
NL +M G E + V Y+T+ID LCK VD A LF +M ++ I PDV TY+
Sbjct: 226 NLLNKMEKGKIE------ADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYS 279
Query: 293 SVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWR 352
S+I C W++A RL +M+++ + P+VVTF+ ++D K GK+ +A +L + MI R
Sbjct: 280 SLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR 339
Query: 353 GVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEA 412
++PN TYN+LI+G+C+ D++D A+++F M S C+ DVV+YNTLIN +CK K V +
Sbjct: 340 SIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDG 399
Query: 413 LSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDG 472
+ L+ +M +G+ VTY TL G F+ + A +F +M + V + TYN +DG
Sbjct: 400 MELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDG 459
Query: 473 LCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508
LCK+G + +A+ +F ++ SK E +I +YN + +G+
Sbjct: 460 LCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGM 495
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 312 bits (799), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 170/459 (37%), Positives = 259/459 (56%), Gaps = 42/459 (9%)
Query: 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYT 144
I ++A+ +F M+ P P V F+ LF +AK K YD VL+L K++ G+ ++YT
Sbjct: 67 IKADDAIDLFRDMIHSRPLPT-VIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYT 125
Query: 145 HSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHR 204
SI+INCFC+ ++ F +G+I++ + PN +TF++LI GLC E R+ EA L +
Sbjct: 126 LSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMV 185
Query: 205 VFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVT--------- 255
+PD+ T NTL+NGLC +G A+ L ++M E+G C+PN VT
Sbjct: 186 EMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMV----EYG--CQPNAVTYGPVLNVMC 239
Query: 256 --------------------------YNTIIDGLCKEGFVDKAKELFLKMKDENINPDVV 289
Y+ IIDGLCK G +D A LF +M+ + I +++
Sbjct: 240 KSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNII 299
Query: 290 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELM 349
TY +I GFC A W++ +L +M+ + + P+VVTFSV++D K GK+ +A L + M
Sbjct: 300 TYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEM 359
Query: 350 IWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDV 409
I RG+ P+T TY +LIDG+C + +D A ++ M S GC ++ ++N LIN YCK +
Sbjct: 360 IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRI 419
Query: 410 EEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNF 469
++ L L+ +M +G+ VTYNTL G E+ ++ A +LF EM V + TY
Sbjct: 420 DDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKIL 479
Query: 470 IDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508
+DGLC +G +ALE+F I SK EL+I YN +I G+
Sbjct: 480 LDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGM 518
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 311 bits (797), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 170/467 (36%), Positives = 261/467 (55%), Gaps = 34/467 (7%)
Query: 71 KERCKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLF 130
+ER +S I I ++A+ +F M R P P + F+ LF +A+ K YD VL L
Sbjct: 41 RERLRSG----IVDIKEDDAVDLFQEMTRSRPRPRLID-FSRLFSVVARTKQYDLVLDLC 95
Query: 131 KRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAE 190
K++ G+ ++YT SI+INC C+ ++S F +G+I++ + P+ VTF++LI GLC E
Sbjct: 96 KQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLE 155
Query: 191 SRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE------ 244
R+ EA L + +P + T N L+NGLC G A+ L + M +
Sbjct: 156 GRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTY 215
Query: 245 ---FGVVCKP--------------------NTVTYNTIIDGLCKEGFVDKAKELFLKMKD 281
V+CK + V Y+ IIDGLCK+G +D A LF +M+
Sbjct: 216 GPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI 275
Query: 282 ENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDK 341
+ D++ YT++IRGFCYA W++ +L +M+ + + PDVV FS ++D K GK+ +
Sbjct: 276 KGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLRE 335
Query: 342 ASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLIN 401
A L + MI RG++P+T TY +LIDG+C +++D A + M S GC ++ ++N LIN
Sbjct: 336 AEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILIN 395
Query: 402 WYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAA 461
YCK +++ L L+ +M +G+ VTYNTL G E+ ++E A +LF EM V
Sbjct: 396 GYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRP 455
Query: 462 DTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508
D +Y +DGLC +G +ALE+F I SK EL+I YN +I G+
Sbjct: 456 DIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGM 502
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 310 bits (795), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 169/481 (35%), Positives = 269/481 (55%), Gaps = 51/481 (10%)
Query: 72 ERCKSSGQGDI---------NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKH 122
ER +S GD ++I ++A+ +F M++ P P V FN L +AK
Sbjct: 40 ERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVE-FNKLLSAVAKMNK 98
Query: 123 YDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 182
++ V+SL +++ + G+ D+YT+SI INCFC+ ++S VL ++++ + P+ VT +S
Sbjct: 99 FELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158
Query: 183 LIKGLCAESRIMEAAALFTK-----------------HRVF------------------A 207
L+ G C RI +A AL + H +F
Sbjct: 159 LLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG 218
Query: 208 CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG 267
C+PD+ TY T++NGLC+ G +ALNL +M K N V +NTIID LCK
Sbjct: 219 CQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAAR------IKANVVIFNTIIDSLCKYR 272
Query: 268 FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFS 327
V+ A +LF +M+ + I P+VVTY S+I C W++A RL M+++ + P+VVTF+
Sbjct: 273 HVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFN 332
Query: 328 VIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESN 387
++D K GK+ +A +L E MI R ++P+T TYN LI+G+C+ +++D A+++F M S
Sbjct: 333 ALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSK 392
Query: 388 GCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERA 447
C+ ++ +YNTLIN +CK K VE+ + L+ EM +G+ VTY T+ G F+ + A
Sbjct: 393 DCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSA 452
Query: 448 LKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDG 507
+F +M N V D TY+ + GLC G + AL +F+ ++ S+ ELNI YN +I+G
Sbjct: 453 QMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEG 512
Query: 508 L 508
+
Sbjct: 513 M 513
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 508 | ||||||
| 359479583 | 627 | PREDICTED: pentatricopeptide repeat-cont | 0.927 | 0.751 | 0.510 | 1e-134 | |
| 449529622 | 618 | PREDICTED: pentatricopeptide repeat-cont | 0.925 | 0.760 | 0.479 | 1e-124 | |
| 449520325 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.852 | 0.715 | 0.477 | 1e-116 | |
| 255559961 | 628 | pentatricopeptide repeat-containing prot | 0.838 | 0.678 | 0.479 | 1e-114 | |
| 449520323 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.940 | 0.790 | 0.445 | 1e-113 | |
| 449462477 | 597 | PREDICTED: pentatricopeptide repeat-cont | 0.925 | 0.787 | 0.437 | 1e-109 | |
| 224130786 | 599 | predicted protein [Populus trichocarpa] | 0.824 | 0.699 | 0.434 | 2e-96 | |
| 147788022 | 585 | hypothetical protein VITISV_032632 [Viti | 0.826 | 0.717 | 0.430 | 8e-95 | |
| 224130828 | 617 | predicted protein [Populus trichocarpa] | 0.834 | 0.687 | 0.419 | 9e-95 | |
| 224092696 | 597 | predicted protein [Populus trichocarpa] | 0.816 | 0.695 | 0.408 | 1e-93 |
| >gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Vitis vinifera] gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 249/488 (51%), Positives = 322/488 (65%), Gaps = 17/488 (3%)
Query: 21 RCNFSSSFPHTRKPTSSISENEPSYPTTTSKLKESLRLTVKDRASLKKFLKERCKSSGQG 80
RC SS F H +P S P S K+++ DR L+ FLK CKS
Sbjct: 23 RCKLSSLFEHPHRPIS---------PGPISLTKDTVS-NAPDRGQLENFLKSNCKSGH-- 70
Query: 81 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFP 140
I +EA +F++++ M P+PP +SSFN L G +AK K Y V+SL+KR++ GL P
Sbjct: 71 ----IKRSEAFSVFNHLIDMQPTPP-ISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAP 125
Query: 141 DIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALF 200
D T +ILINC+C + +V G VLG +LR +PN VTFTSL+KGLC SRI EA L
Sbjct: 126 DFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLL 185
Query: 201 TKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTII 260
K P+V TY TL+NGLC TG+T++A+ L EEM NGNG FGV KPN V Y TII
Sbjct: 186 RKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTII 245
Query: 261 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 320
D LCK+G +DK KELFL+MK I+PDVV Y+S+I G C+ W AK LF EM+D+GV
Sbjct: 246 DSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVH 305
Query: 321 PDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKL 380
P+VVTF+V++D LCK GKM++A+ LL+LMI RG +P+T+TYNTLIDG+CL +ID AR L
Sbjct: 306 PNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDL 365
Query: 381 FVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE 440
FVSMES G D VSYN LIN YCK+ + EA LY EM+ K I PTV+TYNTL GLF
Sbjct: 366 FVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFR 425
Query: 441 IHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVS 500
+V A LF EM+ + + ++ TYN +DGLCK+ + EA+ELF + + ++ +I
Sbjct: 426 EGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQI 485
Query: 501 YNCLIDGL 508
+NCLIDGL
Sbjct: 486 FNCLIDGL 493
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/484 (47%), Positives = 311/484 (64%), Gaps = 14/484 (2%)
Query: 25 SSSFPHTRKPTSSISENEPSYPTTTSKLKESLRLTVKDRASLKKFLKERCKSSGQGDINL 84
SS+ P + TSS P P + R + L FL+ CK+
Sbjct: 23 SSTIPSSIPQTSSTHHPNPILPAAFN------REEISFHHPLSLFLR-NCKTGN------ 69
Query: 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYT 144
IT +A FD M+R HP PP +SSFN L G LAK HY + SL+ + AGL PD++T
Sbjct: 70 ITAIQAFHFFDLMMRSHPIPP-ISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFT 128
Query: 145 HSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHR 204
SIL NC C + RVS + ILR + PN VT+T+LIKGLC E RI EA LF + +
Sbjct: 129 LSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQ 188
Query: 205 VFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLC 264
C P+ TY TLI GLC+TG+ +AL L +EM N ++GV CKP +TY+ IIDGLC
Sbjct: 189 KLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLC 248
Query: 265 KEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV 324
K G D+AKELF +MK + + PDV++Y+++I GFC A W+++K LF EM+DQGVQPD+V
Sbjct: 249 KVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMV 308
Query: 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSM 384
TFSV++D LCK GK+ +A +LLE+MI RG+ PN TYN+LIDG+C+ ++ AR+LF+SM
Sbjct: 309 TFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSM 368
Query: 385 ESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQV 444
S G D +SY TLIN YCK V+EA++LY+EML G P V TY TL GLF+ +V
Sbjct: 369 PSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKV 428
Query: 445 ERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCL 504
A KLF M+ V+A++ Y F+DGLCK+ + EA+ELF ++ ++LNI +Y+CL
Sbjct: 429 GDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCL 488
Query: 505 IDGL 508
IDGL
Sbjct: 489 IDGL 492
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/440 (47%), Positives = 290/440 (65%), Gaps = 7/440 (1%)
Query: 69 FLKERCKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLS 128
F CK+ +T AL F M+R P+P +SSFN L LAK KHY V S
Sbjct: 38 FFLRHCKTGN------VTATHALHFFHLMMRSTPTPS-LSSFNHLLSGLAKIKHYSQVFS 90
Query: 129 LFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLC 188
L+ ++ +GL D T +IL+NC C + R+ GF ILR ++PN VT+ +LIKGLC
Sbjct: 91 LYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLC 150
Query: 189 AESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 248
E RI EA LF + + C PDV TY TLI GLC TG+ +AL L +EM N + +
Sbjct: 151 MEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEIN 210
Query: 249 CKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAK 308
CKPN +TYN I+DGLCK G D+AK+LF +MK + + P +++Y S+I GFC A W E+K
Sbjct: 211 CKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESK 270
Query: 309 RLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGY 368
RL EM+DQG+QPD+VTF+V++D LCK GK+ +A +LL +MI G+ P+ TYN+LI+G+
Sbjct: 271 RLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGF 330
Query: 369 CLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTV 428
C+ ++ AR+LFVSM S GC DV+SYN LIN Y K VEEA+ LY+EML G +P V
Sbjct: 331 CMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNV 390
Query: 429 VTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRA 488
+TY++L G+F +V+ A KLF M+ + +A ++YTY F+DGLCK+ + EA++LF
Sbjct: 391 ITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTE 450
Query: 489 IRDSKYELNIVSYNCLIDGL 508
++ S ++L I + NCLIDGL
Sbjct: 451 LKSSNFKLEIENLNCLIDGL 470
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/446 (47%), Positives = 296/446 (66%), Gaps = 20/446 (4%)
Query: 66 LKKFLKERCKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDT 125
L++FL+ CKS GD L +EAL F+ M+ M +P +S FN LFG LAK K Y
Sbjct: 73 LEQFLEINCKS---GDFTL---HEALHFFNQMIHMQTTPA-LSRFNNLFGALAKKKQYLH 125
Query: 126 VLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 185
V+S+ R+NS GL + + +IL+NC C + RV GFVV G ILR + PN TFT+L+K
Sbjct: 126 VISMCGRMNSIGLLKNFISLNILLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVK 185
Query: 186 GLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 245
GLC E +I EA +F VF C P T LI+GLCRTG+T AL L E M NGN +F
Sbjct: 186 GLCLEGKIGEAVRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDF 245
Query: 246 GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWN 305
G+ CKP V+Y+ IID LCK+G V++AKE F++MK++ I P+VVTYTS++ G C A++W
Sbjct: 246 GINCKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWE 305
Query: 306 EAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLI 365
EAKRLFIEM+D G+ PDVVTFSV++ LCK GK+ +AS L +LM+ R V P+T TYN LI
Sbjct: 306 EAKRLFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILI 365
Query: 366 DGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIK 425
+GYCL +D +K+F+SM + C HD SY+ L+ YCK+ +V A+ LY EM+ +GI+
Sbjct: 366 EGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRGIQ 425
Query: 426 PTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYT---YNNFIDGLCKSGFVLEA 482
PTV+TY+ +V A KLF E++ + D+ + YN ++DGLCK+G V EA
Sbjct: 426 PTVITYS----------KVGDARKLFGEIQFQDMVLDSISYSIYNVYLDGLCKNGCVSEA 475
Query: 483 LELFRAIRDSKYELNIVSYNCLIDGL 508
L++F + + K+ N+ +N LI+G+
Sbjct: 476 LDVFYGLENCKFASNVAIFNSLINGM 501
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/498 (44%), Positives = 310/498 (62%), Gaps = 20/498 (4%)
Query: 18 SALRCNFSSSFPHTRKPTSSISENEPSYPTTTSKLKESLRLTVKD-------RASLKKFL 70
S ++ N SSS T PT I + P + + +SL ++ ++ + L FL
Sbjct: 13 SIVKPNLSSSL-FTHSPT--IPSSNPHFSSAVHH--KSLNVSPQNFNTPISFQQQLSMFL 67
Query: 71 KERCKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLF 130
CK+ IT +A F M+ +P+PP +SSF L LAK KHY V L+
Sbjct: 68 -HNCKTGN------ITATQAFQFFHLMMYSNPTPP-LSSFTHLLSGLAKIKHYSQVFYLY 119
Query: 131 KRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAE 190
++ +G+ PD T +IL+NC C + RV G V+ ILR + P+ VT+T+LIKGLC E
Sbjct: 120 NQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCME 179
Query: 191 SRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK 250
RI +AA LFT+ + C P+ TY TL+ GLCRTG+ +AL L +EM N + +G+ K
Sbjct: 180 HRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFK 239
Query: 251 PNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRL 310
P ++Y+ IID LCK+ D+A++LF +MK + + P V++YTS+I GFC W EAKRL
Sbjct: 240 PVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRL 299
Query: 311 FIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL 370
F EM++QGVQP+VVTF+V++D LCK GK+ +A LLE+MI RG+ PN TYN+LI+G+CL
Sbjct: 300 FNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCL 359
Query: 371 TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVT 430
++ AR+LFVSM S GC DV+ Y LIN YCK VEEA+ LY+ ML G +P V T
Sbjct: 360 VGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKT 419
Query: 431 YNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR 490
Y L GLF+ +V A KLF M+ + D Y Y F++GLCK+G + EA+ELF ++
Sbjct: 420 YGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLK 479
Query: 491 DSKYELNIVSYNCLIDGL 508
+L+I +NCLIDGL
Sbjct: 480 SYNIKLDIECFNCLIDGL 497
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 218/498 (43%), Positives = 307/498 (61%), Gaps = 28/498 (5%)
Query: 18 SALRCNFSSSFPHTRKPTSSISENEPSYPTTTSKLKESLRLTVKD-------RASLKKFL 70
S ++ N SSS T PT I + P + + +SL ++ ++ + L FL
Sbjct: 13 SIVKPNLSSSL-FTHSPT--IPSSNPHFSSAVHH--KSLNVSPQNFNTPISFQQQLSMFL 67
Query: 71 KERCKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLF 130
CK+ IT +A F M+ +P+PP +SSF L LAK KHY V L+
Sbjct: 68 -HNCKTGN------ITAIQAFQFFHLMMYSNPTPP-LSSFTHLLSGLAKIKHYSQVFYLY 119
Query: 131 KRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAE 190
++ +G+ PD T +IL+NC C + RV G V+ ILR + P+ VT+T+LIKGLC E
Sbjct: 120 NQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCME 179
Query: 191 SRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK 250
RI +AA LFT+ + C P+ TY TL+ GLCRTG+ +AL L +EM N + +G+ K
Sbjct: 180 HRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFK 239
Query: 251 PNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRL 310
P ++Y+ IID LCK+ D+A++LF +MK + + P V++YTS++ W EAKRL
Sbjct: 240 PVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLM--------WEEAKRL 291
Query: 311 FIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL 370
F EM++QGVQP+VVTF+V++D LCK GK+ +A LLE+MI RG+ PN TYN+LI+G+CL
Sbjct: 292 FNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCL 351
Query: 371 TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVT 430
++ AR+LFVSM S GC DV+ Y LIN YCK VEEA+ LY+ ML G +P V T
Sbjct: 352 VGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKT 411
Query: 431 YNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR 490
Y L GLF+ +V A KLF M+ + D Y Y F++GLCK+G + EA+ELF ++
Sbjct: 412 YGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLK 471
Query: 491 DSKYELNIVSYNCLIDGL 508
+L+I +NCLIDGL
Sbjct: 472 SYNIKLDIECFNCLIDGL 489
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa] gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 185/426 (43%), Positives = 265/426 (62%), Gaps = 7/426 (1%)
Query: 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDI 142
N I+ ++AL F MLRM+P P V F G +AK K Y TV+SL +++ G+ ++
Sbjct: 69 NSISIDDALASFYRMLRMNPRPS-VVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNV 127
Query: 143 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTK 202
Y+ +ILINC C++ V VLG++ + P+A+TF +LI G C E I EA LF +
Sbjct: 128 YSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNE 187
Query: 203 HRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDG 262
+PDV +Y+T+INGLC++G+T +AL L +M CKPN V Y TIID
Sbjct: 188 MVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKG------CKPNLVAYTTIIDS 241
Query: 263 LCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPD 322
LCK+ V+ A +L +M D I PDVVTY++++ GFC NEA LF EM+ + V P+
Sbjct: 242 LCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPN 301
Query: 323 VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFV 382
VTF++++D LCK G + +A + E M +G PN YTYN L+DGYCL +++D A+K+
Sbjct: 302 TVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLD 361
Query: 383 SMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIH 442
M GC V SYN LIN YCK + ++EA SL EM K + P VTY+TL GL ++
Sbjct: 362 IMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVG 421
Query: 443 QVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYN 502
+ + AL LF EM + + D TY+ +DGLCK G + EAL+L +++++SK E +IV YN
Sbjct: 422 RPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYN 481
Query: 503 CLIDGL 508
LI+G+
Sbjct: 482 ILIEGM 487
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 353 bits (907), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 184/427 (43%), Positives = 258/427 (60%), Gaps = 7/427 (1%)
Query: 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD 141
+N T ++AL F+ ML MHP PP FN L +AK K Y TV SL +++S G+ PD
Sbjct: 43 LNFNTLDDALSSFNRMLHMHP-PPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPD 101
Query: 142 IYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFT 201
+YT +ILIN FC + R F VL +IL+ P+ TFT+LI+GLC E +I +A LF
Sbjct: 102 VYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFD 161
Query: 202 KHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIID 261
K +P+V TY TLINGLC+ G+T A+ L M GN C+P+ V Y +IID
Sbjct: 162 KMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGN------CQPDVVVYTSIID 215
Query: 262 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 321
LCK+ V +A LF KM + I+PD+ TYTS+I C +W L +M++ + P
Sbjct: 216 SLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMP 275
Query: 322 DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLF 381
DVV FS ++D LCK GK+ +A ++++MI RGV PN TYN L+DG+CL ++D A K+F
Sbjct: 276 DVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVF 335
Query: 382 VSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI 441
+M NG +V+SYNTLIN YCK + +++A L+ EM K + P VTYNTL GL +
Sbjct: 336 DTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHV 395
Query: 442 HQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSY 501
+++ A+ LF EM + D TY +D LCK + EA+ L + I S + +I Y
Sbjct: 396 GRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIY 455
Query: 502 NCLIDGL 508
+IDG+
Sbjct: 456 TIVIDGM 462
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa] gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 353 bits (907), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 181/431 (41%), Positives = 262/431 (60%), Gaps = 7/431 (1%)
Query: 78 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAG 137
G N I+ ++AL F M+RM+P P V F G +AK K Y + +SL +++ G
Sbjct: 68 GSNTSNDISIDDALTSFYRMVRMNPRPS-VVEFGKFLGSIAKKKQYSSAVSLCNQMDLFG 126
Query: 138 LFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAA 197
+ ++Y+ ++LINC C++ V V+G++ + P+A+TF +LI GLC E +I EA
Sbjct: 127 VTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAV 186
Query: 198 ALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYN 257
LF + EP+V +YNT+INGLC+ G+TI+A+ +F +M G KPN VTYN
Sbjct: 187 GLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRG------KPNVVTYN 240
Query: 258 TIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 317
TIID LCK+ V++A E +M D I PDVVTY +++ GFC NEA RLF EM+ +
Sbjct: 241 TIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGR 300
Query: 318 GVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHA 377
V PD VTF++++D LCK G + +A + E M +G PN YTYN L+DGYCL +++D A
Sbjct: 301 NVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEA 360
Query: 378 RKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLG 437
K+ M GC ++ SYN LIN YCK+K + EA L SEM K + P VTY+TL G
Sbjct: 361 IKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQG 420
Query: 438 LFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELN 497
L ++ + AL LF EM + + D Y+ +DG CK G + EAL+L + + + + + N
Sbjct: 421 LCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPN 480
Query: 498 IVSYNCLIDGL 508
I+ Y LI G+
Sbjct: 481 IILYTILIRGM 491
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa] gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 172/421 (40%), Positives = 257/421 (61%), Gaps = 6/421 (1%)
Query: 88 NEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSI 147
++AL F++ML P P + +L + ++YD V+SL K++ GL P+IYT SI
Sbjct: 74 DDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSI 133
Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFA 207
+NCFC++ RV GF VL ++++ P VTFT+LI GLC +A LF
Sbjct: 134 FMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKG 193
Query: 208 CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG 267
C+PDV+TYNT+INGLC+ G T A L ++M C+PN VTY+T+ID LC++
Sbjct: 194 CQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAG------CQPNMVTYSTLIDSLCRDR 247
Query: 268 FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFS 327
V++A ++F MK + I+PD+ TYTS+I+G C + W EA L EM + PD+VTF+
Sbjct: 248 LVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFN 307
Query: 328 VIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESN 387
V++D CK GK+ +A +L+ M GV PN TY++L+ GY L + ARKLF M +
Sbjct: 308 VLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITK 367
Query: 388 GCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERA 447
GC ++ SYN LIN YCK K ++EA+ L++EM+ +G+ P V+YNTL G ++ ++ A
Sbjct: 368 GCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREA 427
Query: 448 LKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDG 507
LF M N D +TY+ +DG CK G++ +A LFRA++ + + N+V Y L+
Sbjct: 428 QDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHA 487
Query: 508 L 508
+
Sbjct: 488 M 488
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 508 | ||||||
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.775 | 0.626 | 0.392 | 3.4e-77 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.775 | 0.625 | 0.377 | 5.5e-77 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.775 | 0.641 | 0.375 | 1.1e-76 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.775 | 0.625 | 0.377 | 2.7e-75 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.840 | 0.670 | 0.365 | 7.3e-75 | |
| TAIR|locus:2015213 | 629 | AT1G63150 [Arabidopsis thalian | 0.775 | 0.626 | 0.367 | 8.4e-74 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.775 | 0.621 | 0.37 | 2.2e-73 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.775 | 0.636 | 0.382 | 2.2e-73 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.775 | 0.682 | 0.355 | 5.9e-73 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.820 | 0.647 | 0.363 | 7.5e-73 |
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 157/400 (39%), Positives = 241/400 (60%)
Query: 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRI 168
S+NIL C + L++ ++ G PDI T S L+N +C R+S ++ ++
Sbjct: 117 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 176
Query: 169 LRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHT 228
+ PN VTF +LI GL ++ EA AL + C+PD+FTY T++NGLC+ G
Sbjct: 177 FVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 236
Query: 229 IVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDV 288
+AL+L ++M G E VV Y TIID LC V+ A LF +M ++ I P+V
Sbjct: 237 DLALSLLKKMEKGKIEADVVI------YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNV 290
Query: 289 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLEL 348
VTY S+IR C W++A RL +M+++ + P+VVTFS ++D K GK+ +A +L +
Sbjct: 291 VTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 350
Query: 349 MIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD 408
MI R ++P+ +TY++LI+G+C+ D++D A+ +F M S C +VV+YNTLI +CK K
Sbjct: 351 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410
Query: 409 VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNN 468
VEE + L+ EM +G+ VTYNTL GLF+ + A K+F +M + V D TY+
Sbjct: 411 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 470
Query: 469 FIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508
+DGLCK G + +AL +F ++ SK E +I +YN +I+G+
Sbjct: 471 LLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGM 510
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
Identities = 151/400 (37%), Positives = 240/400 (60%)
Query: 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRI 168
+++IL C + L++ ++ G P+I T S L+N +C R+S ++ ++
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177
Query: 169 LRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHT 228
+ + PN VTF +LI GL ++ EA AL + C+PD+ TY ++NGLC+ G T
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237
Query: 229 IVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDV 288
+A NL +M G E P + YNTIIDGLCK +D A LF +M+ + I P+V
Sbjct: 238 DLAFNLLNKMEQGKLE------PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNV 291
Query: 289 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLEL 348
VTY+S+I C W++A RL +M+++ + PDV TFS ++D K GK+ +A +L +
Sbjct: 292 VTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDE 351
Query: 349 MIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD 408
M+ R ++P+ TY++LI+G+C+ D++D A+++F M S C DVV+YNTLI +CK K
Sbjct: 352 MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKR 411
Query: 409 VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNN 468
VEE + ++ EM +G+ VTYN L GLF+ + A ++F EM + V + TYN
Sbjct: 412 VEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 471
Query: 469 FIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508
+DGLCK+G + +A+ +F ++ SK E I +YN +I+G+
Sbjct: 472 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 511
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
Identities = 150/400 (37%), Positives = 240/400 (60%)
Query: 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRI 168
++NI+ CL + L++ ++ G P I T + L+N FC R+S ++ ++
Sbjct: 102 TYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 161
Query: 169 LRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHT 228
+ + P+ VTFT+L+ GL ++ EA AL + V C+PD+ TY +INGLC+ G
Sbjct: 162 VEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEP 221
Query: 229 IVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDV 288
+ALNL +M G E VV Y+T+ID LCK VD A LF +M ++ I PDV
Sbjct: 222 DLALNLLNKMEKGKIEADVVI------YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDV 275
Query: 289 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLEL 348
TY+S+I C W++A RL +M+++ + P+VVTF+ ++D K GK+ +A +L +
Sbjct: 276 FTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDE 335
Query: 349 MIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD 408
MI R ++PN TYN+LI+G+C+ D++D A+++F M S C+ DVV+YNTLIN +CK K
Sbjct: 336 MIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKK 395
Query: 409 VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNN 468
V + + L+ +M +G+ VTY TL G F+ + A +F +M + V + TYN
Sbjct: 396 VVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNT 455
Query: 469 FIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508
+DGLCK+G + +A+ +F ++ SK E +I +YN + +G+
Sbjct: 456 LLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGM 495
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
Identities = 151/400 (37%), Positives = 240/400 (60%)
Query: 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRI 168
+++IL C + L++ ++ G PDI T + L+N FC R+S ++G++
Sbjct: 118 TYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQM 177
Query: 169 LRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHT 228
+ + P++ TF +LI GL +R EA AL + V C+PD+ TY ++NGLC+ G
Sbjct: 178 VEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDI 237
Query: 229 IVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDV 288
+AL+L ++M G E P V YNTIID LC V+ A LF +M ++ I P+V
Sbjct: 238 DLALSLLKKMEQGKIE------PGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNV 291
Query: 289 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLEL 348
VTY S+IR C W++A RL +M+++ + P+VVTFS ++D K GK+ +A +L +
Sbjct: 292 VTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 351
Query: 349 MIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD 408
MI R ++P+ +TY++LI+G+C+ D++D A+ +F M S C +VV+YNTLI +CK K
Sbjct: 352 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 411
Query: 409 VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNN 468
V+E + L+ EM +G+ VTY TL G F+ + + A +F +M + V D TY+
Sbjct: 412 VDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSI 471
Query: 469 FIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508
+DGLC +G V AL +F ++ SK E +I +YN +I+G+
Sbjct: 472 LLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGM 511
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
Identities = 160/438 (36%), Positives = 251/438 (57%)
Query: 71 KERCKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLF 130
+ER +S G DI ++A+ +F M+ P P V F+ LF +AK K YD VL+L
Sbjct: 57 RERLRS-GLVDIKA---DDAIDLFRDMIHSRPLPT-VIDFSRLFSAIAKTKQYDLVLALC 111
Query: 131 KRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAE 190
K++ G+ ++YT SI+INCFC+ ++ F +G+I++ + PN +TF++LI GLC E
Sbjct: 112 KQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLE 171
Query: 191 SRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK 250
R+ EA L + +PD+ T NTL+NGLC +G A+ L ++M E+G C+
Sbjct: 172 GRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMV----EYG--CQ 225
Query: 251 PNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRL 310
PN VTY +++ +CK G A EL KM++ NI D V Y+ +I G C + A L
Sbjct: 226 PNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNL 285
Query: 311 FIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL 370
F EM +G+ +++T+++++ C G+ D ++LL MI R +NPN T++ LID +
Sbjct: 286 FNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK 345
Query: 371 TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVT 430
K+ A +L M G D ++Y +LI+ +CK +++A + M+SKG P + T
Sbjct: 346 EGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRT 405
Query: 431 YNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR 490
+N L G + ++++ L+LF +M V ADT TYN I G C+ G + A ELF+ +
Sbjct: 406 FNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMV 465
Query: 491 DSKYELNIVSYNCLIDGL 508
K NIV+Y L+DGL
Sbjct: 466 SRKVPPNIVTYKILLDGL 483
|
|
| TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 147/400 (36%), Positives = 235/400 (58%)
Query: 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRI 168
+++I C + L++ ++ G PDI T S L+N +C R+S ++ ++
Sbjct: 120 TYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 179
Query: 169 LRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHT 228
+ + P+ TFT+LI GL ++ EA AL + C+PD+ TY T++NGLC+ G
Sbjct: 180 VEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDI 239
Query: 229 IVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDV 288
+ALNL +M K N V +NTIID LCK V+ A +LF +M+ + I P+V
Sbjct: 240 DLALNLLNKMEAAR------IKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNV 293
Query: 289 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLEL 348
VTY S+I C W++A RL M+++ + P+VVTF+ ++D K GK+ +A +L E
Sbjct: 294 VTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEE 353
Query: 349 MIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD 408
MI R ++P+T TYN LI+G+C+ +++D A+++F M S C+ ++ +YNTLIN +CK K
Sbjct: 354 MIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKR 413
Query: 409 VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNN 468
VE+ + L+ EM +G+ VTY T+ G F+ + A +F +M N V D TY+
Sbjct: 414 VEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSI 473
Query: 469 FIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508
+ GLC G + AL +F+ ++ S+ ELNI YN +I+G+
Sbjct: 474 LLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGM 513
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
Identities = 148/400 (37%), Positives = 239/400 (59%)
Query: 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRI 168
++NIL C + L+L ++ G P I T S L+N +C R+S ++ ++
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
Query: 169 LRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHT 228
+ + P+ +TFT+LI GL ++ EA AL + C+P++ TY ++NGLC+ G T
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 241
Query: 229 IVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDV 288
+ALNL +M E VV +NTIID LCK VD A LF +M+ + I P+V
Sbjct: 242 DLALNLLNKMEAAKIEADVVI------FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNV 295
Query: 289 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLEL 348
VTY+S+I C W++A +L +M+++ + P++VTF+ ++D K GK +A +L +
Sbjct: 296 VTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDD 355
Query: 349 MIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD 408
MI R ++P+ +TYN+L++G+C+ D++D A+++F M S C DVV+YNTLI +CK+K
Sbjct: 356 MIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKR 415
Query: 409 VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNN 468
VE+ L+ EM +G+ VTY TL GLF + A K+F +M + V D TY+
Sbjct: 416 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI 475
Query: 469 FIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508
+DGLC +G + +ALE+F ++ S+ +L+I Y +I+G+
Sbjct: 476 LLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGM 515
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
Identities = 153/400 (38%), Positives = 231/400 (57%)
Query: 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRI 168
+ I+ C + K S+ R G PD T S L+N FC GRVS ++ R+
Sbjct: 107 TMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRM 166
Query: 169 LRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHT 228
+ P+ VT ++LI GLC + R+ EA L + + +PD TY ++N LC++G++
Sbjct: 167 VEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNS 226
Query: 229 IVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDV 288
+AL+LF +M N K + V Y+ +ID LCK+G D A LF +M+ + I DV
Sbjct: 227 ALALDLFRKMEERN------IKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADV 280
Query: 289 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLEL 348
VTY+S+I G C W++ ++ EM+ + + PDVVTFS ++D K GK+ +A L
Sbjct: 281 VTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNE 340
Query: 349 MIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD 408
MI RG+ P+T TYN+LIDG+C + + A ++F M S GC D+V+Y+ LIN YCK K
Sbjct: 341 MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKR 400
Query: 409 VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNN 468
V++ + L+ E+ SKG+ P +TYNTL LG + ++ A +LF EM V TY
Sbjct: 401 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 460
Query: 469 FIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508
+DGLC +G + +ALE+F ++ S+ L I YN +I G+
Sbjct: 461 LLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGM 500
|
|
| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 142/400 (35%), Positives = 237/400 (59%)
Query: 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRI 168
++NIL C + L+L ++ G P I T S L+N +C R+S ++ ++
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
Query: 169 LRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHT 228
+ + P+ +TFT+LI GL ++ EA AL + C+P++ TY ++NGLC+ G
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDI 241
Query: 229 IVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDV 288
+A NL +M E N V Y+T+ID LCK D A LF +M+++ + P+V
Sbjct: 242 DLAFNLLNKMEAAKIE------ANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNV 295
Query: 289 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLEL 348
+TY+S+I C W++A RL +M+++ + P+VVTF+ ++D K GK+ +A +L +
Sbjct: 296 ITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDE 355
Query: 349 MIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD 408
MI R ++P+ +TY++LI+G+C+ D++D A+ +F M S C +VV+YNTLIN +CK K
Sbjct: 356 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKR 415
Query: 409 VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNN 468
++E + L+ EM +G+ VTY TL G F+ + A +F +M + V + TYN
Sbjct: 416 IDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNT 475
Query: 469 FIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508
+DGLCK+G + +A+ +F ++ SK E I +YN +I+G+
Sbjct: 476 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 515
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 154/424 (36%), Positives = 243/424 (57%)
Query: 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYT 144
I ++A+ +F M++ P P V FN LF +AK K Y+ VL+L K++ S G+ IYT
Sbjct: 67 IKADDAVDLFRDMIQSRPLPT-VIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYT 125
Query: 145 HSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHR 204
SI+INCFC+ ++S+ F +G+I++ + P+ V F +L+ GLC E R+ EA L +
Sbjct: 126 LSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMV 185
Query: 205 VFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLC 264
+P + T NTL+NGLC G A+ L + M E G +PN VTY +++ +C
Sbjct: 186 EMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMV----ETGF--QPNEVTYGPVLNVMC 239
Query: 265 KEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV 324
K G A EL KM++ NI D V Y+ +I G C + A LF EM +G + D++
Sbjct: 240 KSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADII 299
Query: 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSM 384
T++ ++ C G+ D ++LL MI R ++PN T++ LID + K+ A +L M
Sbjct: 300 TYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEM 359
Query: 385 ESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQV 444
G + ++YN+LI+ +CK +EEA+ + M+SKG P ++T+N L G + +++
Sbjct: 360 MQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRI 419
Query: 445 ERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCL 504
+ L+LF EM V A+T TYN + G C+SG + A +LF+ + + +IVSY L
Sbjct: 420 DDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKIL 479
Query: 505 IDGL 508
+DGL
Sbjct: 480 LDGL 483
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00023872001 | SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (660 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 508 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-36 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-23 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-22 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-19 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-19 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-19 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-15 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-15 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-10 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-06 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 8e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 | |
| pfam13170 | 297 | pfam13170, DUF4003, Protein of unknown function (D | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 2e-36
Identities = 97/375 (25%), Positives = 172/375 (45%), Gaps = 7/375 (1%)
Query: 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVV 164
P +S+FN+L A ++ D L + + + AGL D ++ LI+ K G+V F V
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 165 LGRILRSCFTPNAVTFTSLIKGLCAES-RIMEAAALFTKHRVFACEPDVFTYNTLINGLC 223
++ + N TF +LI G CA + ++ +A + R +PD +N LI+
Sbjct: 495 FHEMVNAGVEANVHTFGALIDG-CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553
Query: 224 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDEN 283
++G A ++ EM E + P+ +T ++ G VD+AKE++ + + N
Sbjct: 554 QSGAVDRAFDVLAEM---KAETHPI-DPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609
Query: 284 INPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKAS 343
I YT + DW+ A ++ +M +GV+PD V FS ++D G +DKA
Sbjct: 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669
Query: 344 RLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWY 403
+L+ +G+ T +Y++L+ A +L+ ++S V + N LI
Sbjct: 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729
Query: 404 CKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADT 463
C+ + +AL + SEM G+ P +TY+ L + + L L + + + + +
Sbjct: 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789
Query: 464 YTYNNFIDGLCKSGF 478
I GLC F
Sbjct: 790 VMCRC-ITGLCLRRF 803
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 7e-23
Identities = 76/340 (22%), Positives = 147/340 (43%), Gaps = 20/340 (5%)
Query: 174 TPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFAC------EPDVFTYNTLINGLCRTGH 227
P TF L+ +CA S+ ++ A RV + D Y TLI+ ++G
Sbjct: 434 NPTLSTFNMLMS-VCASSQDIDGA-----LRVLRLVQEAGLKADCKLYTTLISTCAKSGK 487
Query: 228 TIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPD 287
+F EM N E N T+ +IDG + G V KA + M+ +N+ PD
Sbjct: 488 VDAMFEVFHEMVNAGVE------ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541
Query: 288 VVTYTSVIRGFCYANDWNEAKRLFIEMM--DQGVQPDVVTFSVIMDELCKNGKMDKASRL 345
V + ++I + + A + EM + PD +T +M G++D+A +
Sbjct: 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601
Query: 346 LELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK 405
+++ + Y ++ D A ++ M+ G D V ++ L++
Sbjct: 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661
Query: 406 NKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYT 465
D+++A + + +GIK V+Y++L ++AL+L+++++ + T
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721
Query: 466 YNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLI 505
N I LC+ + +ALE+ ++ N ++Y+ L+
Sbjct: 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 99.2 bits (247), Expect = 8e-22
Identities = 86/395 (21%), Positives = 157/395 (39%), Gaps = 62/395 (15%)
Query: 118 AKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRS-CFTPN 176
AK+ D + +F + +AG+ +++T LI+ + G+V+ F G I+RS P+
Sbjct: 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG-IMRSKNVKPD 541
Query: 177 AVTFTSLIKGLCAESRIMEAAALF-----TKHRVFACEPDVFTYNTLINGLCRTGHTIVA 231
V F +LI C +S ++ A F K +PD T L+ G A
Sbjct: 542 RVVFNALISA-CGQSGAVDRA--FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598
Query: 232 LNLFEEMANGN------------------GEFGVVC-----------KPNTVTYNTIIDG 262
+++ + N G++ KP+ V ++ ++D
Sbjct: 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658
Query: 263 LCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPD 322
G +DKA E+ + + I V+Y+S++ A +W +A L+ ++ ++P
Sbjct: 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718
Query: 323 VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFV 382
V T + ++ LC+ ++ KA +L M G+ PNT TY+ L+ D D L
Sbjct: 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778
Query: 383 SMESNGCMHDVVSYNTLINW-------YC----------------KNKDVEEALSLYSEM 419
+ +G ++V + C +NK AL +Y E
Sbjct: 779 QAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838
Query: 420 LSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEM 454
+S G PT+ + + L H +L + +
Sbjct: 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENL 873
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 82.1 bits (204), Expect = 1e-19
Identities = 26/49 (53%), Positives = 36/49 (73%)
Query: 251 PNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFC 299
P+ VTYNT+IDG CK+G V++A +LF +MK I P+V TY+ +I G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 5e-19
Identities = 74/330 (22%), Positives = 144/330 (43%), Gaps = 25/330 (7%)
Query: 188 CAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 247
C + R ++ A F K P + T+N L++ +C + I +G V
Sbjct: 416 CKKQRAVKEAFRFAK---LIRNPTLSTFNMLMS-VCASSQDI------------DGALRV 459
Query: 248 V-------CKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCY 300
+ K + Y T+I K G VD E+F +M + + +V T+ ++I G
Sbjct: 460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519
Query: 301 ANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRG--VNPNT 358
A +A + M + V+PD V F+ ++ ++G +D+A +L M ++P+
Sbjct: 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579
Query: 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSE 418
T L+ ++D A++++ + Y +N + D + ALS+Y +
Sbjct: 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD 639
Query: 419 MLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGF 478
M KG+KP V ++ L +++A ++ + R+ + T +Y++ + +
Sbjct: 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699
Query: 479 VLEALELFRAIRDSKYELNIVSYNCLIDGL 508
+ALEL+ I+ K + + N LI L
Sbjct: 700 WKKALELYEDIKSIKLRPTVSTMNALITAL 729
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 7e-19
Identities = 29/47 (61%), Positives = 35/47 (74%)
Query: 392 DVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGL 438
DVV+YNTLI+ YCK VEEAL L++EM +GIKP V TY+ L GL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 9e-19
Identities = 95/384 (24%), Positives = 157/384 (40%), Gaps = 90/384 (23%)
Query: 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLG 166
+ S+N+L G AK ++D L L+ R+ AG+ PD+YT C
Sbjct: 152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFP------C------------- 192
Query: 167 RILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRV-FACEPDVFTYNTLINGLCRT 225
+LR+C G+ +R E A H V F E DV N LI +
Sbjct: 193 -VLRTC------------GGIPDLARGREVHA----HVVRFGFELDVDVVNALITMYVKC 235
Query: 226 GHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENIN 285
G + A +F+ M + + +++N +I G + G + ELF M++ +++
Sbjct: 236 GDVVSARLVFDRMP----------RRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285
Query: 286 PDVVTYTSVI---------------------RGFC--------------YANDWNEAKRL 310
PD++T TSVI GF W EA+++
Sbjct: 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345
Query: 311 FIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL 370
F M + D V+++ ++ KNG DKA LM V+P+ T +++
Sbjct: 346 FSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401
Query: 371 TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVT 430
+D KL E G + VV N LI Y K K +++AL ++ + K V++
Sbjct: 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVIS 457
Query: 431 YNTLFLGLFEIHQVERALKLFDEM 454
+ ++ GL ++ AL F +M
Sbjct: 458 WTSIIAGLRLNNRCFEALIFFRQM 481
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 8e-18
Identities = 94/435 (21%), Positives = 170/435 (39%), Gaps = 73/435 (16%)
Query: 93 IFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCF 152
+FD M R S+N + +N L LF + + PD+ T + +I+
Sbjct: 244 VFDRMPRRD-----CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA- 297
Query: 153 CKM------GRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF 206
C++ GR HG+VV ++ F + SLI+ + EA +F++
Sbjct: 298 CELLGDERLGREMHGYVV-----KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET- 351
Query: 207 ACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTY---------- 256
D ++ +I+G + G AL + M N P+ +T
Sbjct: 352 ---KDAVSWTAMISGYEKNGLPDKALETYALMEQDN------VSPDEITIASVLSACACL 402
Query: 257 -------------------------NTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTY 291
N +I+ K +DKA E+F + ++ DV+++
Sbjct: 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISW 458
Query: 292 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIW 351
TS+I G N EA +F M ++P+ VT + + G + + ++
Sbjct: 459 TSIIAGLRLNNRCFEA-LIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517
Query: 352 RGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEE 411
G+ + + N L+D Y ++++A F N DVVS+N L+ Y +
Sbjct: 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQF-----NSHEKDVVSWNILLTGYVAHGKGSM 572
Query: 412 ALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN-HVAADTYTYNNFI 470
A+ L++ M+ G+ P VT+ +L V + L+ F M + + Y +
Sbjct: 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632
Query: 471 DGLCKSGFVLEALEL 485
D L ++G + EA
Sbjct: 633 DLLGRAGKLTEAYNF 647
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.6 bits (182), Expect = 1e-16
Identities = 25/49 (51%), Positives = 35/49 (71%)
Query: 321 PDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYC 369
PDVVT++ ++D CK GK+++A +L M RG+ PN YTY+ LIDG C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 3e-16
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 286 PDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCK 335
PDVVTY ++I G+C EA +LF EM +G++P+V T+S+++D LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 4e-16
Identities = 29/56 (51%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 210 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCK 265
PDV TYNTLI+G C+ G AL LF EM KPN TY+ +IDGLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG------IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.1 bits (173), Expect = 2e-15
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 356 PNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK 405
P+ TYNTLIDGYC K++ A KLF M+ G +V +Y+ LI+ CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 4e-15
Identities = 74/370 (20%), Positives = 151/370 (40%), Gaps = 46/370 (12%)
Query: 169 LRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHT 228
FT A T+ +L++ A I A++ EPD + N ++ + G
Sbjct: 115 AGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174
Query: 229 IVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDV 288
I A LF+EM N ++ TII GL G +A LF +M ++ + +
Sbjct: 175 IDARRLFDEMPERNL----------ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP 224
Query: 289 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLEL 348
T+ ++R ++L ++ GV D ++D K G ++ A + +
Sbjct: 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284
Query: 349 M------IWR-------------------------GVNPNTYTYNTLIDGYCLTDKIDHA 377
M W GV+ + +T++ +I + ++HA
Sbjct: 285 MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344
Query: 378 RKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLG 437
++ + G D+V+ L++ Y K +E+A +++ M K + +++N L G
Sbjct: 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL----ISWNALIAG 400
Query: 438 LFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI-RDSKYEL 496
+ +A+++F+ M VA + T+ + SG + E+F+++ + + +
Sbjct: 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460
Query: 497 NIVSYNCLID 506
+ Y C+I+
Sbjct: 461 RAMHYACMIE 470
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 8e-12
Identities = 92/433 (21%), Positives = 170/433 (39%), Gaps = 85/433 (19%)
Query: 89 EALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSIL 148
EAL +F+ + P P S+++ L K V +++ + S+G PD Y + +
Sbjct: 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164
Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTK--HRVF 206
+ K G + R+ N ++ ++I GL EA ALF +
Sbjct: 165 LLMHVKCGMLIDA----RRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220
Query: 207 ACEPDVFTYNTLIN-----GLCRTGH--------------TIVALNLFEEMANGNGE--- 244
EP F ++ G R G T V+ L + M + G+
Sbjct: 221 DAEPRTFV--VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID-MYSKCGDIED 277
Query: 245 ----FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCY 300
F + + TV +N+++ G G+ ++A L+ +M+D ++ D T++ +IR F
Sbjct: 278 ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337
Query: 301 ANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYT 360
AK+ ++ G D+V + ++D K G+M+ A + + M + N +
Sbjct: 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLIS 393
Query: 361 YNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEML 420
+N LI GY +H R +A+ ++ M+
Sbjct: 394 WNALIAGYG-----NHGRG------------------------------TKAVEMFERMI 418
Query: 421 SKGIKPTVVTYNTL-----FLGLFEIHQVERALKLFDEMRRNH-VAADTYTYNNFIDGLC 474
++G+ P VT+ + + GL E+ ++F M NH + Y I+ L
Sbjct: 419 AEGVAPNHVTFLAVLSACRYSGL-----SEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473
Query: 475 KSGFVLEALELFR 487
+ G + EA + R
Sbjct: 474 REGLLDEAYAMIR 486
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 8e-12
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 249 CKPNTVTYNTIIDGLCKEGFVDKAKELFLKMK 280
KP+ VTYNT+IDGLC+ G VD+A EL +M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 1e-11
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 175 PNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCR 224
P+ VT+ +LI G C + ++ EA LF + + +P+V+TY+ LI+GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 55/272 (20%), Positives = 110/272 (40%), Gaps = 18/272 (6%)
Query: 216 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKEL 275
N +++ R G + A +F +M + + ++N ++ G K G+ D+A L
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMP----------ERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 276 FLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCK 335
+ +M + PDV T+ V+R D + + ++ G + DV + ++ K
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 336 NGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVS 395
G + A + + M R + ++N +I GY + +LF +M D+++
Sbjct: 235 CGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290
Query: 396 YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMR 455
++I+ D ++ ++ G V N+L + A K+F M
Sbjct: 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350
Query: 456 RNHVAADTYTYNNFIDGLCKSGFVLEALELFR 487
D ++ I G K+G +ALE +
Sbjct: 351 TK----DAVSWTAMISGYEKNGLPDKALETYA 378
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 54/260 (20%), Positives = 103/260 (39%), Gaps = 24/260 (9%)
Query: 111 NILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILR 170
N L +K K D L +F + D+ + + +I R + ++L
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLL 483
Query: 171 SCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFAC--EPDVFTYNTLINGLCRTGHT 228
+ PN+VT + + CA + H V D F N L++ R G
Sbjct: 484 T-LKPNSVTLIAALSA-CARIGALMCGKEIHAH-VLRTGIGFDGFLPNALLDLYVRCGRM 540
Query: 229 IVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDV 288
A N F + + V++N ++ G G A ELF +M + +NPD
Sbjct: 541 NYAWNQFN-----------SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589
Query: 289 VTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GVQPDVVTFSVIMDELCKNGKMDKASRLLE 347
VT+ S++ + + F M ++ + P++ ++ ++D L + GK+ +A +
Sbjct: 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649
Query: 348 LMIWRGVNPNTYTYNTLIDG 367
M + P+ + L++
Sbjct: 650 KM---PITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 4e-10
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 208 CEPDVFTYNTLINGLCRTGHTIVALNLFEEM 238
+PDV TYNTLI+GLCR G A+ L +EM
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 6e-10
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 462 DTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508
D TYN IDG CK G V EAL+LF ++ + N+ +Y+ LIDGL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 9e-10
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 394 VSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTV 428
V+YNTLI+ CK VEEAL L+ EM +GI+P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 2e-09
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 140 PDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLC 188
PD+ T++ LI+ +CK G+V + + + PN T++ LI GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 3e-09
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCK 154
P V ++N L K + L LF + G+ P++YT+SILI+ CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 5/154 (3%)
Query: 332 ELCK-NGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCM 390
+ CK + +A R +L+ NP T+N L+ + ID A ++ ++ G
Sbjct: 414 KACKKQRAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLK 469
Query: 391 HDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKL 450
D Y TLI+ K+ V+ ++ EM++ G++ V T+ L G QV +A
Sbjct: 470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529
Query: 451 FDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALE 484
+ MR +V D +N I +SG V A +
Sbjct: 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.0 bits (121), Expect = 1e-08
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 352 RGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSME 385
+G+ P+ TYNTLIDG C ++D A +L ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 1e-08
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 394 VSYNTLINWYCKNKDVEEALSLYSEMLSKGI 424
V+YN+LI+ YCK +EEAL L+ EM KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.0 bits (121), Expect = 2e-08
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 387 NGCMHDVVSYNTLINWYCKNKDVEEALSLYSEM 419
G DVV+YNTLI+ C+ V+EA+ L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.0 bits (121), Expect = 2e-08
Identities = 15/33 (45%), Positives = 27/33 (81%)
Query: 317 QGVQPDVVTFSVIMDELCKNGKMDKASRLLELM 349
+G++PDVVT++ ++D LC+ G++D+A LL+ M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-08
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 254 VTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDV 288
VTYNT+IDGLCK G V++A ELF +MK+ I PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 7e-08
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 254 VTYNTIIDGLCKEGFVDKAKELFLKMKDENI 284
VTYN++I G CK G +++A ELF +MK++ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 6e-07
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 289 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDV 323
VTY ++I G C A EA LF EM ++G++PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (107), Expect = 1e-06
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 283 NINPDVVTYTSVIRGFCYANDWNEAKRLFIEM 314
+ PDVVTY ++I G C A +EA L EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 2e-06
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 422 KGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMR 455
KG+KP VVTYNTL GL +V+ A++L DEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 7e-06
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGC 389
TYN+LI GYC K++ A +LF M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.5 bits (111), Expect = 8e-06
Identities = 45/242 (18%), Positives = 83/242 (34%), Gaps = 4/242 (1%)
Query: 266 EGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV- 324
+ A + L+ + + + + + + EA L E ++ D+
Sbjct: 1 LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60
Query: 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPN-TYTYNTLIDGYCLTDKIDHARKLFVS 383
++ L K G++++A LLE + + PN L K + A +L
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 384 MESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEML--SKGIKPTVVTYNTLFLGLFEI 441
+ D+ + + D EEAL LY + L + L L +
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180
Query: 442 HQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSY 501
+ E AL+L ++ + + D N K G EALE + + + Y
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALY 240
Query: 502 NC 503
N
Sbjct: 241 NL 242
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 9e-06
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGC 389
TYNTLIDG C +++ A +LF M+ G
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 2e-05
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 459 VAADTYTYNNFIDGLCKSGFVLEALELFR 487
+ D TYN IDGLC++G V EA+EL
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLD 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 289 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 319
VTY S+I G+C A EA LF EM ++GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-05
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 288 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 321
+ TY +++ A D + A + EM G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 2e-05
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 393 VVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKP 426
+ +YN L+ K D + AL++ EM + G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 7e-05
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 213 FTYNTLINGLCRTGHTIVALNLFEEM 238
TYN+LI+G C+ G AL LF+EM
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 1e-04
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 137 GLFPDIYTHSILINCFCKMGRVSHGFVVL 165
GL PD+ T++ LI+ C+ GRV +L
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 173 FTPNAVTFTSLIKGLCAESRIMEAAALF 200
P+ VT+ +LI GLC R+ EA L
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 324 VTFSVIMDELCKNGKMDKASRLLELMIWRGV 354
VT++ ++ CK GK+++A L + M +GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 7e-04
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 324 VTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNT 358
VT++ ++D LCK G++++A L + M RG+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 8e-04
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 464 YTYNNFIDGLCKSGFVLEALELFRAIRDS 492
TYN+ I G CK+G + EALELF+ +++
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 16/26 (61%), Positives = 19/26 (73%)
Query: 213 FTYNTLINGLCRTGHTIVALNLFEEM 238
TYNTLI+GLC+ G AL LF+EM
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEM 26
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 464 YTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNI 498
TYN IDGLCK+G V EALELF+ +++ E ++
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 253 TVTYNTIIDGLCKEGFVDKAKELFLKMKDENINP 286
TYN ++ L K G D A + +MK + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 104 PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFV 163
S++ L G + K++ L L++ + S L P + T + LI C+ ++
Sbjct: 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740
Query: 164 VLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLC 223
VL + R PN +T++ L+ + L ++ + +P++ + GLC
Sbjct: 741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 429 VTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADT 463
VTYNTL GL + +VE AL+LF EM+ + D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 143 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNA 177
T++ LI+ CK GRV + + P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 429 VTYNTLFLGLFEIHQVERALKLFDEMRRNHV 459
VTYN+L G + ++E AL+LF EM+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|221954 pfam13170, DUF4003, Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 15/109 (13%)
Query: 361 YNTLIDGYCLTDKIDHARKLF---VSMES--NGCMHDVVSYNTLINWYCKNKDVEEALSL 415
N D ++ RK M S G + ++ I++ + ++E L +
Sbjct: 29 NNKEFD----FERFKEIRKYIKENTGMFSPFRGNVRYSLASLLDIHFEDPEEAIQEILDI 84
Query: 416 YSEMLSKGIKPTVVTYNTLFLGLFEIH------QVERALKLFDEMRRNH 458
Y ++ +G K + Y + L + R +++ M++ H
Sbjct: 85 YDKLKEEGFKRSEYLYLAALIILEYREKEDYDEIINRTKEIYKLMKKKH 133
|
This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 327 and 345 amino acids in length. Length = 297 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 508 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.86 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.81 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.76 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.76 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.72 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.72 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.72 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.72 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.72 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.72 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.71 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.7 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.69 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.68 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.68 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.68 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.66 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.66 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.65 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.64 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.63 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.6 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.57 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.56 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.54 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.5 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.5 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.49 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.49 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.48 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.48 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.47 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.47 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.46 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.45 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.45 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.43 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.43 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.42 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.4 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.4 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.38 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.36 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.34 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.32 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.29 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.28 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.27 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.26 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.26 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.26 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.26 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.25 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.16 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.15 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.15 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.14 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.13 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.13 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.1 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.09 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.06 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.03 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.03 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.03 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.02 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.97 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.97 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.97 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.95 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.94 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.94 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.9 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.89 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.85 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.8 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.79 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.79 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.78 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.78 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.76 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.75 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.74 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.74 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.72 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.72 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.72 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.72 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.71 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.67 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.67 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.66 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.65 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.63 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.62 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.59 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.57 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.52 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.49 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.48 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.47 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.46 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.45 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.36 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.28 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.27 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.22 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.21 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.2 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.15 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.05 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.03 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.0 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.99 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.98 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.98 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.98 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.97 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.95 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.95 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.95 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.95 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.94 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.94 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.93 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.92 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.9 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.89 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.89 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.89 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.88 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.88 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.86 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.85 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.85 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.84 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.83 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.82 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.79 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.79 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.77 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.77 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.77 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.75 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.75 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.74 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.72 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.72 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.71 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.68 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.66 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.66 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.65 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.65 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.57 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.54 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.54 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.51 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.51 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.49 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.48 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.47 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.44 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.41 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.4 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.39 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.39 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.38 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.38 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.37 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.35 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.34 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.27 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.24 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.18 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.17 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.13 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.06 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.06 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.05 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.05 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.03 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.93 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.93 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.88 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.88 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.84 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.84 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.81 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.77 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.75 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.73 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.69 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.64 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.64 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.61 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.61 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.54 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.53 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.5 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.45 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.44 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.33 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.33 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.26 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.23 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.15 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.14 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.12 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.06 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.0 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.97 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.94 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.91 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.87 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.87 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.83 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.79 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.79 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.78 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.68 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.64 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.63 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.61 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.58 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.55 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.51 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.16 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.02 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.93 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.87 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.85 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.84 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.8 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.78 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.73 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.7 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.69 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.65 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.64 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.6 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 94.57 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.56 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 94.28 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.25 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.08 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.03 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.96 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.67 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.61 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.6 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.42 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.95 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.54 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 92.49 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.44 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.38 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.23 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.18 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 92.0 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.96 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.9 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.84 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.77 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 91.44 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.42 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.32 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.3 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 91.29 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 91.24 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.11 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.89 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.88 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.76 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.66 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.65 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 90.65 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.61 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.61 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 90.57 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.41 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 90.18 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.07 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.64 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.51 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.44 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 89.03 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.02 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.95 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.82 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.6 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 88.49 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.26 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 88.11 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.07 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.91 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.89 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.49 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.35 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.93 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.9 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 86.73 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 86.67 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.49 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.41 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.82 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.05 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.53 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 84.53 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.49 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 84.25 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 84.2 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.2 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 83.2 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 83.17 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 82.92 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.91 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 82.58 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.56 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 82.19 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 82.14 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 80.98 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 80.56 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 80.14 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 80.01 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-65 Score=515.47 Aligned_cols=415 Identities=21% Similarity=0.335 Sum_probs=404.0
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
+.|++++|+++|++|.+.+..+++...++.++..|.+.|.+++|..+|+.|.. ||..+|+.++.+|++.|+++.|.
T Consensus 382 r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~ 457 (1060)
T PLN03218 382 RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGAL 457 (1060)
T ss_pred HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHH
Confidence 45899999999999999887667888888999999999999999999999974 89999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|+++|++|...+
T Consensus 458 ~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G 537 (1060)
T PLN03218 458 RVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhh--CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044044 243 GEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKD--ENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 320 (508)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 320 (508)
+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 538 ------v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 538 ------VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred ------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 899999999999999999999999999999976 578999999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044044 321 PDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLI 400 (508)
Q Consensus 321 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (508)
|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI 691 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044044 401 NWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVL 480 (508)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 480 (508)
.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le 771 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCccCHHHHHHHHcc
Q 044044 481 EALELFRAIRDSKYELNIVSYNCLIDG 507 (508)
Q Consensus 481 ~A~~~~~~m~~~g~~p~~~~~~~ll~~ 507 (508)
+|.+++++|.+.|+.||..+|++|+..
T Consensus 772 ~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 772 VGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999864
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-64 Score=512.07 Aligned_cols=416 Identities=23% Similarity=0.356 Sum_probs=397.9
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
..|.+++|+.+|+.+.. |+..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 418 ~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~ 492 (1060)
T PLN03218 418 KQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492 (1060)
T ss_pred HCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHH
Confidence 45789999999988853 6899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|...+
T Consensus 493 ~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~ 572 (1060)
T PLN03218 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET 572 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998632
Q ss_pred CCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044044 243 GEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPD 322 (508)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 322 (508)
.. +.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 573 ~g----i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD 648 (1060)
T PLN03218 573 HP----IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648 (1060)
T ss_pred CC----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Confidence 10 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINW 402 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 402 (508)
..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+
T Consensus 649 ~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~g 728 (1060)
T PLN03218 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c--
Q 044044 403 YCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCK----S-- 476 (508)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~-- 476 (508)
|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ +
T Consensus 729 y~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~ 808 (1060)
T PLN03218 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACA 808 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876432 1
Q ss_pred -----------------CCHHHHHHHHHHHHHcCCccCHHHHHHHHcc
Q 044044 477 -----------------GFVLEALELFRAIRDSKYELNIVSYNCLIDG 507 (508)
Q Consensus 477 -----------------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 507 (508)
+..++|..+|++|++.|+.||..||+.+|.+
T Consensus 809 l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~c 856 (1060)
T PLN03218 809 LGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGC 856 (1060)
T ss_pred hhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 2246799999999999999999999999954
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-61 Score=485.84 Aligned_cols=405 Identities=21% Similarity=0.321 Sum_probs=390.0
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
..|++++|+++|+++...++..|+..+|+.++.++.+.++++.+.+++..|.+.|+.||..+|+.++..|++.|+++.|.
T Consensus 99 ~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 99 ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHH
Confidence 45789999999999998776668999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
++|++|. .||..+|+.++.+|++.|++++|+++|++|...|..|+..+|+.++.++.+.|+.+.+.+++..+.+.+
T Consensus 179 ~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g 254 (697)
T PLN03081 179 RLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254 (697)
T ss_pred HHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Confidence 9999996 479999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044044 243 GEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPD 322 (508)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 322 (508)
..+|..+|+.++.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 255 ------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 255 ------VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred ------CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 889999999999999999999999999999964 4889999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINW 402 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 402 (508)
..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|+++|++++|.++|++|.+ ||..+||.+|.+
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~ 400 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAG 400 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999964 789999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 044044 403 YCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR-NHVAADTYTYNNFIDGLCKSGFVLE 481 (508)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~ 481 (508)
|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 999999999999999999999999999999999999999999999999999986 5999999999999999999999999
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHccC
Q 044044 482 ALELFRAIRDSKYELNIVSYNCLIDGL 508 (508)
Q Consensus 482 A~~~~~~m~~~g~~p~~~~~~~ll~~~ 508 (508)
|.+++++| ++.|+..+|++||++|
T Consensus 481 A~~~~~~~---~~~p~~~~~~~Ll~a~ 504 (697)
T PLN03081 481 AYAMIRRA---PFKPTVNMWAALLTAC 504 (697)
T ss_pred HHHHHHHC---CCCCCHHHHHHHHHHH
Confidence 99998876 6899999999999886
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=478.75 Aligned_cols=405 Identities=20% Similarity=0.298 Sum_probs=346.3
Q ss_pred CCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcch
Q 044044 81 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 160 (508)
+.+.|++++|..+|+++. . ++..+||.++.+|.+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.
T Consensus 232 y~k~g~~~~A~~lf~~m~----~-~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMP----R-RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred HhcCCCHHHHHHHHhcCC----C-CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Confidence 457799999999999984 3 68889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 161 GFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
|.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|.+.|++++|+++|++|..
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986 57889999999999999999999999999988
Q ss_pred CCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 044044 241 GNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ--- 317 (508)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 317 (508)
.+ +.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+.
T Consensus 383 ~g------~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v 456 (857)
T PLN03077 383 DN------VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI 456 (857)
T ss_pred hC------CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCee
Confidence 87 778888888888888888888888887777777777777777777777777777766666666665431
Q ss_pred ---------------------------CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 044044 318 ---------------------------GVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL 370 (508)
Q Consensus 318 ---------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (508)
++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.+|..++++|+.+|++
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k 536 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH
Confidence 24555555555555555555555555555555555666666666667777777
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 044044 371 TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKL 450 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 450 (508)
+|++++|.++|+.+ .+|..+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++
T Consensus 537 ~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 537 CGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred cCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence 77777777777766 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHHHHHHHHccC
Q 044044 451 FDEMR-RNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508 (508)
Q Consensus 451 ~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 508 (508)
|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++| +++||..+|++||.+|
T Consensus 612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNAC 667 (857)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHH
Confidence 99999 6799999999999999999999999999999998 4899999999999886
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-58 Score=473.51 Aligned_cols=410 Identities=25% Similarity=0.381 Sum_probs=299.2
Q ss_pred CCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcch
Q 044044 81 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 160 (508)
+.+.|+++.|+++|+++. . |+..+|+.++.+|.+.|++++|+++|++|...|+.||..+|+.++++|+..++++.
T Consensus 131 ~~~~g~~~~A~~~f~~m~----~-~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 131 FVRFGELVHAWYVFGKMP----E-RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHhCCChHHHHHHHhcCC----C-CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 356789999999999884 2 68999999999999999999999999999999999999999888888877777777
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 161 GFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
+.+++..+.+.|+.|+..+++.|+.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|+++|++|..
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777766665 34566666666666666666666666666665
Q ss_pred CCCCCC-----------------------------ccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhH
Q 044044 241 GNGEFG-----------------------------VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTY 291 (508)
Q Consensus 241 ~~~~~~-----------------------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 291 (508)
.+.... ....||..+|+.++.+|++.|++++|.++|++|.. ||..+|
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~ 357 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSW 357 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeH
Confidence 540000 00344555555555555555555555555555532 355566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcC
Q 044044 292 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLT 371 (508)
Q Consensus 292 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (508)
+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.
T Consensus 358 n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 66666666666666667777777666777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------------------------
Q 044044 372 DKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKP------------------------- 426 (508)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------------------------- 426 (508)
|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+.+|++|.. ++.|
T Consensus 438 g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 438 KCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred CCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 777777777777653 4556666666666666666666666666653 2344
Q ss_pred ----------------------------------------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044044 427 ----------------------------------------TVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTY 466 (508)
Q Consensus 427 ----------------------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 466 (508)
|..+|+.++.+|++.|+.++|+++|++|.+.|+.||..||
T Consensus 513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Confidence 4455677777788888888888888888888888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH-HcCCccCHHHHHHHHccC
Q 044044 467 NNFIDGLCKSGFVLEALELFRAIR-DSKYELNIVSYNCLIDGL 508 (508)
Q Consensus 467 ~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~ 508 (508)
+.++.+|.+.|++++|.++|++|. +.|+.|+..+|++|+++|
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 888888888888888888888888 678888888888888754
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-56 Score=449.66 Aligned_cols=389 Identities=17% Similarity=0.270 Sum_probs=195.3
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
+.|+++.|.++|+++. . |+..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.
T Consensus 170 k~g~~~~A~~lf~~m~----~-~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 170 KCGMLIDARRLFDEMP----E-RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred cCCCHHHHHHHHhcCC----C-CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 3444444444444442 1 3444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
+++..+.+.|+.+|..+|+.|+.+|++.|++++|.++|++|. ++|..+|+.++.+|++.|++++|+++|++|...+
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 444444444444455555555555555555555555555543 2345555555555555555555555555555444
Q ss_pred CCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044044 243 GEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPD 322 (508)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 322 (508)
+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ ||
T Consensus 321 ------~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d 390 (697)
T PLN03081 321 ------VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KN 390 (697)
T ss_pred ------CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CC
Confidence 44555555555555555555555555555555555555555555555555555555555555555432 34
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHH
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMES-NGCMHDVVSYNTLIN 401 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~ 401 (508)
..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 4555555555555555555555555555555555555555555555555555555555555543 344555555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044044 402 WYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLE 481 (508)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 481 (508)
+|++.|++++|.+++++| +..|+..+|+.|+.+|...|+++.|..+++++.+.+ +.+..+|..++..|++.|++++
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHH
Confidence 555555555555554433 234455555555555555555555555555544321 1123455555555555555555
Q ss_pred HHHHHHHHHHcCC
Q 044044 482 ALELFRAIRDSKY 494 (508)
Q Consensus 482 A~~~~~~m~~~g~ 494 (508)
|.+++++|.+.|+
T Consensus 547 A~~v~~~m~~~g~ 559 (697)
T PLN03081 547 AAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHHHHcCC
Confidence 5555555555554
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-28 Score=257.78 Aligned_cols=405 Identities=14% Similarity=0.087 Sum_probs=270.8
Q ss_pred CCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcch
Q 044044 81 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 160 (508)
+...|++++|...|+++++..|. +...+..++..+...|++++|.+.|+++.+.+ +.+...+..+...+.+.|+.++
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIEPD--FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHH
Confidence 34455666666666666655554 44555556666666666666666666665543 3345556666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 161 GFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
|...++++...+ +.+...+..++..+...|++++|..+++++.... +.+...|..++.++...|++++|+..|+++..
T Consensus 552 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 552 AVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666665543 3344555566666666667777777666665543 34556667777777777777777777777666
Q ss_pred CCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044044 241 GNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 320 (508)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 320 (508)
.. +.+...+..+..++...|++++|..+|+++.+.. +.+...+..++..+...|++++|..+++.+.+.+ +
T Consensus 630 ~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 700 (899)
T TIGR02917 630 LQ-------PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-P 700 (899)
T ss_pred hC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 43 3345566667777777777777777777766542 3345666677777777777777777777776653 4
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044044 321 PDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLI 400 (508)
Q Consensus 321 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (508)
.+...+..+...+...|++++|...++.+...+ |+..++..++.++.+.|++++|.+.++++.+.. +.+...+..++
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la 777 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALA 777 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 455666667777777777777777777777653 344566667777777888888888777777664 55677777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044044 401 NWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVL 480 (508)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 480 (508)
..|...|++++|...|+++.+..+ .+..++..++..+...|+ .+|+.+++++.+.. +.+..++..+...+.+.|+++
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH
Confidence 888888888888888888877643 466777778888888888 77888888777652 335566777777888888888
Q ss_pred HHHHHHHHHHHcCCccCHHHHHHHHc
Q 044044 481 EALELFRAIRDSKYELNIVSYNCLID 506 (508)
Q Consensus 481 ~A~~~~~~m~~~g~~p~~~~~~~ll~ 506 (508)
+|.++|+++++.+.. +..++..+..
T Consensus 855 ~A~~~~~~a~~~~~~-~~~~~~~l~~ 879 (899)
T TIGR02917 855 RALPLLRKAVNIAPE-AAAIRYHLAL 879 (899)
T ss_pred HHHHHHHHHHhhCCC-ChHHHHHHHH
Confidence 888888888876533 5566555543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-28 Score=257.02 Aligned_cols=391 Identities=15% Similarity=0.152 Sum_probs=349.9
Q ss_pred CCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcc
Q 044044 80 GDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVS 159 (508)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 159 (508)
.+...|++++|...|+.+.+..|. +..++..+...+.+.|++++|..+++++.+.+ +.+...+..++..+.+.|+++
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPK--NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHH
Confidence 345678999999999999998887 88899999999999999999999999998765 556778888999999999999
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044044 160 HGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMA 239 (508)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 239 (508)
+|..+++.+.+.. +.+...|..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|..+|+++.
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998764 5578899999999999999999999999998764 4467789999999999999999999999999
Q ss_pred hCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044044 240 NGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 319 (508)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 319 (508)
... +.+...+..++..+...|++++|.++++.+.+.. +.+...+..+...+...|++++|...|+++...+
T Consensus 663 ~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~- 733 (899)
T TIGR02917 663 ELK-------PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA- 733 (899)
T ss_pred hcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 864 5568899999999999999999999999998874 4467788889999999999999999999999874
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044044 320 QPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTL 399 (508)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 399 (508)
|+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|..+|+++.+.. +.+...++.+
T Consensus 734 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l 810 (899)
T TIGR02917 734 -PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNL 810 (899)
T ss_pred -CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 455777888999999999999999999999874 4478899999999999999999999999999876 6788999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044044 400 INWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFV 479 (508)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 479 (508)
+..+...|+ .+|+.+++++.+... -+..++..+...+...|++++|.++++++.+.+.. +..++..++.++.+.|++
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRK 887 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCH
Confidence 999999999 889999999998743 35667888999999999999999999999998654 899999999999999999
Q ss_pred HHHHHHHHHHH
Q 044044 480 LEALELFRAIR 490 (508)
Q Consensus 480 ~~A~~~~~~m~ 490 (508)
++|.+++++|+
T Consensus 888 ~~A~~~~~~~~ 898 (899)
T TIGR02917 888 AEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHh
Confidence 99999999986
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-24 Score=192.62 Aligned_cols=387 Identities=16% Similarity=0.159 Sum_probs=307.5
Q ss_pred hHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHH
Q 044044 87 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLG 166 (508)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 166 (508)
++.....-....+..|. -.++|..+...+-..|++++|+.+++.+++.. +.....|..+..++...|+.+.|.+.|.
T Consensus 98 ~d~s~a~~~~a~r~~~q--~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~ 174 (966)
T KOG4626|consen 98 LDKSSAGSLLAIRKNPQ--GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFF 174 (966)
T ss_pred hhhhhhhhhhhhhccch--HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHH
Confidence 33333333334444443 55788889999999999999999999998863 3457788899999999999999999999
Q ss_pred HHHhCCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 044044 167 RILRSCFTPNAVT-FTSLIKGLCAESRIMEAAALFTKHRVFACEPD-VFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 244 (508)
Q Consensus 167 ~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 244 (508)
..++. .|+... ...+...+...|++++|...|.+..+. .|. ..+|..|...+-.+|+...|+..|++....++
T Consensus 175 ~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP- 249 (966)
T KOG4626|consen 175 EALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP- 249 (966)
T ss_pred HHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-
Confidence 88876 344443 344555566679999999998888776 333 56789999999999999999999999988652
Q ss_pred CCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H
Q 044044 245 FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPD-V 323 (508)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~ 323 (508)
.-...|..|...|...+.+++|...|.+..... +...+.+..+...|...|+.+-|+..|++.++. .|+ .
T Consensus 250 ------~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~ 320 (966)
T KOG4626|consen 250 ------NFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFP 320 (966)
T ss_pred ------cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCch
Confidence 236688889999999999999999999887752 224677888888888999999999999998886 343 5
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044044 324 VTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWY 403 (508)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (508)
..|+.+..++-..|++.+|.+.+...+... +......+.|..+|...|.+++|..+|....+-. +.-....+.|...|
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIY 398 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHH
Confidence 689999999999999999999999988763 2247788889999999999999999999888763 33456788899999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 044044 404 CKNKDVEEALSLYSEMLSKGIKPT-VVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAAD-TYTYNNFIDGLCKSGFVLE 481 (508)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 481 (508)
-+.|++++|+..|++.++. +|+ ...|+.+...|-..|+.+.|++.+.+.+.. .|. ....+.|...|..+|+..+
T Consensus 399 kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred HhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHH
Confidence 9999999999999999884 555 457888999999999999999999988875 343 4567888899999999999
Q ss_pred HHHHHHHHHHcCCccCH
Q 044044 482 ALELFRAIRDSKYELNI 498 (508)
Q Consensus 482 A~~~~~~m~~~g~~p~~ 498 (508)
|+.-|++.+. ++||.
T Consensus 475 AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 475 AIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHHHHHHc--cCCCC
Confidence 9999999885 45553
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-22 Score=215.05 Aligned_cols=399 Identities=12% Similarity=0.050 Sum_probs=275.9
Q ss_pred CCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHhH-----------
Q 044044 78 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFP-DIYTH----------- 145 (508)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~----------- 145 (508)
|..+...|++++|+..|+++++..|. +..++..+..++.+.|++++|+..|++..+..... ....|
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~--~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK--DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 44566789999999999999999887 88899999999999999999999999998764211 11112
Q ss_pred -HHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHH--
Q 044044 146 -SILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGL-- 222 (508)
Q Consensus 146 -~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-- 222 (508)
......+.+.|++++|+..++++++.. +.+...+..+...+...|++++|++.|+++.... +.+...+..+...+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 122456778999999999999999874 3466778888999999999999999999988764 23444554444443
Q ss_pred ----------------------------------------HhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHH
Q 044044 223 ----------------------------------------CRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDG 262 (508)
Q Consensus 223 ----------------------------------------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 262 (508)
...|++++|++.|++..+.. +.+...+..+...
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-------P~~~~~~~~LA~~ 504 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-------PGSVWLTYRLAQD 504 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 33455555555555555432 2233444445555
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---------hHHHHHHHH
Q 044044 263 LCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV---------TFSVIMDEL 333 (508)
Q Consensus 263 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~ 333 (508)
|.+.|++++|...++++.+.. +.+...+..+...+...+++++|+..++.+......++.. .+......+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 555555555555555554431 1122223233333344455555555554432211111110 112234456
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044044 334 CKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEAL 413 (508)
Q Consensus 334 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 413 (508)
...|+.++|..+++. .+.+...+..+...+.+.|++++|++.|+++.+.. +.+...+..++..+...|++++|+
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 667777777776651 23456677788899999999999999999999875 667888999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 414 SLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHV--AA---DTYTYNNFIDGLCKSGFVLEALELFRA 488 (508)
Q Consensus 414 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~---~~~~~~~li~~~~~~g~~~~A~~~~~~ 488 (508)
+.++.+.+... .+..++..+..++...|++++|.++++++..... +| +...+..+...+...|++++|+..|++
T Consensus 658 ~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 658 AQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99998877532 2556677788899999999999999999987532 22 234666678889999999999999999
Q ss_pred HH-HcCCc
Q 044044 489 IR-DSKYE 495 (508)
Q Consensus 489 m~-~~g~~ 495 (508)
.+ ..|+.
T Consensus 737 Al~~~~~~ 744 (1157)
T PRK11447 737 AMVASGIT 744 (1157)
T ss_pred HHhhcCCC
Confidence 86 34444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-23 Score=186.16 Aligned_cols=374 Identities=15% Similarity=0.126 Sum_probs=317.5
Q ss_pred CCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhH-HHHHHHHHhcC
Q 044044 78 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTH-SILINCFCKMG 156 (508)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g 156 (508)
+..+-..|++++|+.+++.+++..|. ...+|..+..++...|+.+.|.+.|.+.++. .|+.... ..+...+...|
T Consensus 123 aN~~kerg~~~~al~~y~~aiel~p~--fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 123 ANILKERGQLQDALALYRAAIELKPK--FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEG 198 (966)
T ss_pred HHHHHHhchHHHHHHHHHHHHhcCch--hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhc
Confidence 34445678999999999999999988 8999999999999999999999999999985 5765544 44556677789
Q ss_pred CcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-HhhHHHHHHHHHhcCChHHHHHHH
Q 044044 157 RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPD-VFTYNTLINGLCRTGHTIVALNLF 235 (508)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 235 (508)
++.+|...+.+.++.. +--...|..|...+...|+...|+..|++..+. .|+ ...|..|...|...+.+++|+..|
T Consensus 199 rl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred ccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 9999999999998763 234668999999999999999999999999876 454 678999999999999999999999
Q ss_pred HHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 236 EEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMM 315 (508)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 315 (508)
.+..... +-....+..+...|...|..|-|+..|++..+.... -...|+.|..++...|++.+|.+.|.+.+
T Consensus 276 ~rAl~lr-------pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 276 LRALNLR-------PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHhcC-------CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 9988853 345778889999999999999999999999886322 36789999999999999999999999998
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 044044 316 DQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPN-TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVV 394 (508)
Q Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 394 (508)
... +......+.+...+...|.+++|..+|....+- .|. ....+.|...|-++|++++|...+++.++.. +.-..
T Consensus 348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAd 423 (966)
T KOG4626|consen 348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFAD 423 (966)
T ss_pred HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHH
Confidence 863 345668889999999999999999999998865 444 6678899999999999999999999998864 33467
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAAD-TYTYNNFIDGL 473 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~ 473 (508)
.|+.+...|-..|+.+.|++.+.+++..++. -...++.|...|-..|++.+|++-+++..+. .|| ...|..++.++
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHH
Confidence 8999999999999999999999999986422 3567899999999999999999999999985 454 34555555544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-20 Score=189.12 Aligned_cols=405 Identities=12% Similarity=-0.001 Sum_probs=299.2
Q ss_pred hhccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 74 CKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFC 153 (508)
Q Consensus 74 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (508)
....|..++..|+++.|+..|+++++..|. ...|..+..+|.+.|++++|++.++..++.. +.+...|..+..++.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD---PVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 456677788899999999999999988764 5678899999999999999999999999864 446778999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc---------------------------
Q 044044 154 KMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF--------------------------- 206 (508)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------------- 206 (508)
..|++++|+..+..+...+...+.. ...++..+........+...++.-...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 9999999998887665442111211 111111111110111111111110000
Q ss_pred CCCCC-HhhHHHHHHHH---HhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 207 ACEPD-VFTYNTLINGL---CRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 207 ~~~~~-~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
...+. ...+..+...+ ...+++++|++.|+.....+.. .+.+...|..+...+...|++++|...|++..+.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~----~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL----GEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 00000 00111111111 2246899999999999876420 1334567888899999999999999999999886
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHH
Q 044044 283 NINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYN 362 (508)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 362 (508)
. +.....|..+...+...|++++|+..|+++.+.. +.+...|..+...+...|++++|...|++.++.. +.+...+.
T Consensus 361 ~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~ 437 (615)
T TIGR00990 361 D-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHI 437 (615)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHH
Confidence 3 2245678888899999999999999999998863 4567889999999999999999999999999874 23577788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh------HHHHHHH
Q 044044 363 TLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVV------TYNTLFL 436 (508)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~ 436 (508)
.+..++.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|++.|++.++.....+.. .++....
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 88899999999999999999998764 5678899999999999999999999999998864321111 1122223
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 437 GLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
.+...|++++|.+++++..+.. +.+...+..+...+.+.|++++|++.|++..+.
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444699999999999998864 235567889999999999999999999998754
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-22 Score=190.04 Aligned_cols=303 Identities=17% Similarity=0.139 Sum_probs=193.7
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHc
Q 044044 186 GLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCK 265 (508)
Q Consensus 186 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (508)
.+...|++++|+..|.++...+ +.+..++..+...+...|++++|..+++.+....... .......+..++..|.+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT---REQRLLALQELGQDYLK 119 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHHHHH
Confidence 3445566667777777666653 2344566666666677777777777777666542100 00012355666667777
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCChhH
Q 044044 266 EGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDV----VTFSVIMDELCKNGKMDK 341 (508)
Q Consensus 266 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 341 (508)
.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 777777777777776542 234556666777777777777777777776664322211 133445556677777777
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 342 ASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777653 2235566667777777777777777777777653222234567777777777788888777777776
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCccCH
Q 044044 422 KGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCK---SGFVLEALELFRAIRDSKYELNI 498 (508)
Q Consensus 422 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 498 (508)
. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++++.++++|.+.++.|+.
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 5 345555577777777777888888877777764 4677777766666554 45777777777777776665554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-22 Score=188.69 Aligned_cols=303 Identities=14% Similarity=0.084 Sum_probs=165.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhc
Q 044044 114 FGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPN---AVTFTSLIKGLCAE 190 (508)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 190 (508)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344556677777777777777653 33445666666667777777777777776665421111 23455666666666
Q ss_pred CCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC---HhHHHHHHHHHHccC
Q 044044 191 SRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN---TVTYNTIIDGLCKEG 267 (508)
Q Consensus 191 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 267 (508)
|++++|..+|+++.... +.+..++..++..+.+.|++++|++.++.+...++ ..+. ...+..++..+.+.|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-----DSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-----CcchHHHHHHHHHHHHHHHhCC
Confidence 66666666666666542 33455666666666666666666666666665431 0111 112344555555666
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 044044 268 FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLE 347 (508)
Q Consensus 268 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 347 (508)
++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|.+.|++++|...++
T Consensus 195 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 195 DLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666665532 223344555555566666666666666665543211112344555555555555555555555
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCC
Q 044044 348 LMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK---NKDVEEALSLYSEMLSKGI 424 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~ 424 (508)
.+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.+++++.+.++
T Consensus 274 ~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 274 RALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 55544 233334455555555555555555555555544 3455555555444442 3355555555555555444
Q ss_pred CCCH
Q 044044 425 KPTV 428 (508)
Q Consensus 425 ~p~~ 428 (508)
.|++
T Consensus 350 ~~~p 353 (389)
T PRK11788 350 KRKP 353 (389)
T ss_pred hCCC
Confidence 4333
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-20 Score=186.34 Aligned_cols=325 Identities=11% Similarity=0.038 Sum_probs=170.3
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchH
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHG 161 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 161 (508)
+..|++++|+.+++.++...|. +...+..++.++...|++++|+..|+++.+.. +.+...+..+...+...|++++|
T Consensus 53 ~~~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred HhcCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 4456666666666666666555 44445555555555666666666666665542 33444555555556666666666
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044044 162 FVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG 241 (508)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 241 (508)
...++++++.. +.+...+..++..+...|++++|...++++.... +.+...+..+ ..+...|++++|+..++.+...
T Consensus 130 i~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 130 ADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence 66666655542 2344455555555666666666666665554432 1122222222 2345556666666666655544
Q ss_pred CCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHHHHc
Q 044044 242 NGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNE----AKRLFIEMMDQ 317 (508)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~ 317 (508)
. ..++...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++ |...|++..+.
T Consensus 207 ~------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 207 F------ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred C------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 3 12223333344455555666666666666655542 2234455555555556666553 55555555554
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044044 318 GVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYN 397 (508)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (508)
. +.+...+..+...+.+.|++++|...++++.+... .+...+..+..++.+.|++++|...++++.+.+ +.+...+.
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~ 356 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNR 356 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence 2 23344555555556666666666666665555421 134444555555556666666666665555542 11222233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 398 TLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
.+..++...|+.++|+..|+++.+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3344555566666666666655554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-20 Score=197.62 Aligned_cols=394 Identities=11% Similarity=0.037 Sum_probs=286.7
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCC------------------C------
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGL------------------F------ 139 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------~------ 139 (508)
.|+.++|+..++++.+.+|. +...+..+...+...|++++|+..++++.+... .
T Consensus 160 ~g~~~~A~~~L~~ll~~~P~--~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~ 237 (1157)
T PRK11447 160 PAQRPEAINQLQRLNADYPG--NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAA 237 (1157)
T ss_pred CccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHH
Confidence 47889999999999998887 778888999999999999999999998754320 0
Q ss_pred --------CCHHhH---------------------HHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 044044 140 --------PDIYTH---------------------SILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAE 190 (508)
Q Consensus 140 --------~~~~~~---------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (508)
|+.... ......+...|++++|+..|+++++.. +.+...+..+...+.+.
T Consensus 238 l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~ 316 (1157)
T PRK11447 238 LQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQ 316 (1157)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 100000 011344567899999999999998864 34778888999999999
Q ss_pred CCHHHHHHHHHHhhhcCCCC-CHhhH------------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHH
Q 044044 191 SRIMEAAALFTKHRVFACEP-DVFTY------------NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYN 257 (508)
Q Consensus 191 g~~~~A~~~~~~~~~~~~~~-~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (508)
|++++|+..|++..+..... +...| ......+.+.|++++|+..|+++.... +.+...+.
T Consensus 317 g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-------P~~~~a~~ 389 (1157)
T PRK11447 317 GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-------NTDSYAVL 389 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHH
Confidence 99999999999988764221 11112 123456778999999999999999875 45667788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHH------------------------------------------H
Q 044044 258 TIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSV------------------------------------------I 295 (508)
Q Consensus 258 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------------------~ 295 (508)
.+..++...|++++|++.|+++.+... .+...+..+ .
T Consensus 390 ~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a 468 (1157)
T PRK11447 390 GLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQA 468 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 899999999999999999999887532 123233222 2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHH
Q 044044 296 RGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKID 375 (508)
Q Consensus 296 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 375 (508)
..+...|++++|++.|++.++.. +-+...+..+...|.+.|++++|...++++++.... +...+..+...+...++.+
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHH
Confidence 33446788888988888888763 335567777888899999999999999988765322 3333333333333344444
Q ss_pred HHHHHHHHHHhC---------------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044044 376 HARKLFVSMESN---------------------------------------GCMHDVVSYNTLINWYCKNKDVEEALSLY 416 (508)
Q Consensus 376 ~A~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (508)
+|...++.+... ..+.+...+..+...+.+.|++++|+..|
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y 626 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAY 626 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 444433322100 12455666777888899999999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 417 SEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 417 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
+++++..+. +...+..++..+...|++++|++.++.+.+.. +.+...+..+..++...|++++|.+++++++..
T Consensus 627 ~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 627 QRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 999987433 67788899999999999999999999887652 235566777888899999999999999999864
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-20 Score=187.77 Aligned_cols=368 Identities=9% Similarity=-0.010 Sum_probs=256.5
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 044044 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKG 186 (508)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (508)
..-...++..+.+.|++++|..+++...... +-+...+..++.+....|+++.|...++++.... +.+...+..+...
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~ 119 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASV 119 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3344556666778888888888888887763 3345556666677777888888888888887763 3456677777888
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHcc
Q 044044 187 LCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKE 266 (508)
Q Consensus 187 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 266 (508)
+...|++++|+..++++.... +.+...+..++..+...|++++|...++.+.... +.+...+..+ ..+...
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-------P~~~~a~~~~-~~l~~~ 190 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-------PPRGDMIATC-LSFLNK 190 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------CCCHHHHHHH-HHHHHc
Confidence 888888888888888887763 3356677788888888888888888888776654 2233333333 346778
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhH----H
Q 044044 267 GFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDK----A 342 (508)
Q Consensus 267 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a 342 (508)
|++++|...++.+.+....++...+..+...+.+.|++++|+..++++.+.. +.+...+..+...+...|++++ |
T Consensus 191 g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A 269 (656)
T PRK15174 191 SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQA 269 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHH
Confidence 8888888888887665333344444555667778888888888888888763 4456677778888888888875 7
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 343 SRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|+..++++.+.
T Consensus 270 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 270 AEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88888887663 2256777888888888888888888888887764 445667777788888888888888888888775
Q ss_pred CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 423 GIKPTV-VTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTY----TYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 423 ~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
+ |+. ..+..+..++...|+.++|+..|+++.+....--.. ....+-.++...+..++......++.
T Consensus 348 ~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 348 K--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred C--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 3 333 334445667788888888888888877653221122 22333344445555555545555554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-19 Score=184.54 Aligned_cols=396 Identities=11% Similarity=0.022 Sum_probs=303.2
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHH
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFV 163 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 163 (508)
.|+.++|++++..+....|. +...+..+...+...|++++|..++++..+.. +.+...+..+..++...|++++|+.
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~--~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQL--PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47999999999999875554 66679999999999999999999999998863 4567778888899999999999999
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044044 164 VLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 243 (508)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 243 (508)
.++++++.. +.+.. +..+...+...|+.++|+..++++.... +.+...+..+...+...|..++|+..++.+.. .
T Consensus 105 ~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~- 179 (765)
T PRK10049 105 KAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-T- 179 (765)
T ss_pred HHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-C-
Confidence 999998873 44566 8888999999999999999999999874 34566777788888899999999999987664 1
Q ss_pred CCCccccCCH------hHHHHHHHHHH-----ccCCH---HHHHHHHHHHhhC-CCCCChh-hHH----HHHHHHHhcCC
Q 044044 244 EFGVVCKPNT------VTYNTIIDGLC-----KEGFV---DKAKELFLKMKDE-NINPDVV-TYT----SVIRGFCYAND 303 (508)
Q Consensus 244 ~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~g~ 303 (508)
|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+..+...|+
T Consensus 180 -------p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 180 -------PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred -------HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 111 11222222222 22334 7788888888754 2222221 111 11334567799
Q ss_pred HHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHhHHHHHHHHHcCCCHHHHHH
Q 044044 304 WNEAKRLFIEMMDQGVQ-PDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNP---NTYTYNTLIDGYCLTDKIDHARK 379 (508)
Q Consensus 304 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~ 379 (508)
+++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+.+.+..... .......+..++...|++++|..
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999987532 332 22235778999999999999999988653221 13456667778899999999999
Q ss_pred HHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 044044 380 LFVSMESNGC-----------MHD---VVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVE 445 (508)
Q Consensus 380 ~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 445 (508)
+++.+.+... .|+ ...+..+...+...|++++|+++++++.... +.+...+..++..+...|+++
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 9999987631 122 2345667788999999999999999999874 336788899999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHH
Q 044044 446 RALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIV 499 (508)
Q Consensus 446 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 499 (508)
+|++.+++..+.. +.+...+..++..+.+.|++++|..+++++++. .|+..
T Consensus 411 ~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~ 461 (765)
T PRK10049 411 AAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDP 461 (765)
T ss_pred HHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCH
Confidence 9999999999864 335667777888899999999999999999964 45543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-18 Score=172.34 Aligned_cols=382 Identities=11% Similarity=0.005 Sum_probs=275.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLC 188 (508)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (508)
.+...+..+.+.|++++|+..|++.++. .|+...|..+..++.+.|++++|+..++.+++.. +.+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3556778889999999999999999875 6788889999999999999999999999998874 346778888999999
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---------------------C-
Q 044044 189 AESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF---------------------G- 246 (508)
Q Consensus 189 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------------~- 246 (508)
..|++++|+..|......+...+.. ...++..+.. ..+.............. +
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhh
Confidence 9999999999887765543121211 1111111111 11111111111111000 0
Q ss_pred ---ccccCC-HhHHHHHHHH---HHccCCHHHHHHHHHHHhhCC-C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 247 ---VVCKPN-TVTYNTIIDG---LCKEGFVDKAKELFLKMKDEN-I-NPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 247 ---~~~~~~-~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
....++ ...+..+... ....+++++|.+.|++..+.+ . +.....+..+...+...|++++|+..+++.++.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 000000 0011111111 123468999999999998764 2 224567888888889999999999999999886
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044044 318 GVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYN 397 (508)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (508)
. +.+...|..+...+...|++++|...++.+++.. +.+..+|..+...+...|++++|...|++..+.. +.+...+.
T Consensus 361 ~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~ 437 (615)
T TIGR00990 361 D-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHI 437 (615)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHH
Confidence 3 3345688888899999999999999999998774 3357889999999999999999999999999875 55778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHH
Q 044044 398 TLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTY------TYNNFID 471 (508)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~li~ 471 (508)
.+..++.+.|++++|+..|++.++.. +.+...++.+...+...|++++|++.|++..+.....+.. .++..+.
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 89999999999999999999998863 3357788999999999999999999999998753221111 1222233
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCccCHH-HHHHH
Q 044044 472 GLCKSGFVLEALELFRAIRDSKYELNIV-SYNCL 504 (508)
Q Consensus 472 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l 504 (508)
.+...|++++|.+++++.+.. .|+.. .+..+
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~l 548 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALII--DPECDIAVATM 548 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 344579999999999998864 45443 34433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-18 Score=173.32 Aligned_cols=386 Identities=10% Similarity=0.009 Sum_probs=290.3
Q ss_pred HHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 044044 92 CIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRS 171 (508)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 171 (508)
..++. .+.++. +.....-.+.+....|+.++|++++++..... +.+...+..+..++...|++++|.+++++.++.
T Consensus 3 ~~~~~-~~~~~~--~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 3 SWLRQ-ALKSAL--SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred hhhhh-hhccCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444 333343 55555666777789999999999999998632 556667999999999999999999999999876
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccC
Q 044044 172 CFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 251 (508)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 251 (508)
. +.+...+..++..+...|++++|+..++++.... +.+.. +..+..++...|++++|+..++++.+.. +.
T Consensus 79 ~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-------P~ 148 (765)
T PRK10049 79 E-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-------PQ 148 (765)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CC
Confidence 3 4457778888899999999999999999998874 44566 8889999999999999999999999975 44
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHHHc
Q 044044 252 NTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDV------VTYTSVIRGFC-----YANDW---NEAKRLFIEMMDQ 317 (508)
Q Consensus 252 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~ 317 (508)
+...+..+..++...|..++|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+.
T Consensus 149 ~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 149 TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 666777788888899999999999987664 2221 11222222222 22334 7788889888864
Q ss_pred -CCCCCHH-hH----HHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 044044 318 -GVQPDVV-TF----SVIMDELCKNGKMDKASRLLELMIWRGVN-PNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCM 390 (508)
Q Consensus 318 -~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 390 (508)
...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+.+|+++.+....
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 2223221 11 11134556779999999999999987532 332 2223577899999999999999998875311
Q ss_pred C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HhHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 391 H---DVVSYNTLINWYCKNKDVEEALSLYSEMLSKGI-----------KPT---VVTYNTLFLGLFEIHQVERALKLFDE 453 (508)
Q Consensus 391 ~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~ 453 (508)
. .......+..++...|++++|..+++++.+... .|+ ...+..+...+...|+.++|++++++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 134566677788999999999999999987531 123 23456778889999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCH
Q 044044 454 MRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNI 498 (508)
Q Consensus 454 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 498 (508)
+... .+.+...+..+...+...|++++|++.+++.+. +.|+.
T Consensus 385 al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~ 426 (765)
T PRK10049 385 LAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRN 426 (765)
T ss_pred HHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCC
Confidence 9886 355688899999999999999999999999986 45765
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-17 Score=162.95 Aligned_cols=394 Identities=11% Similarity=0.027 Sum_probs=272.4
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
+.|+++.|+..|+++++..|. +......++..+...|+.++|+..+++..... .........+...+...|++++|+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~--~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPL--QSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCcc--chhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 568899999999999998877 43222277788888899999999999988321 233444444466888889999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
++++++++.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+..
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 9999998875 335667777888888999999999999998876 4555555555555555667766999999998875
Q ss_pred CCCCccccCCHhHHHHHHHHHHccCCHHHHHHH-----------------------------------------------
Q 044044 243 GEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKEL----------------------------------------------- 275 (508)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----------------------------------------------- 275 (508)
+.+...+..+..+..+.|-...|.++
T Consensus 200 -------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 200 -------PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred -------CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 33455555555555444443333333
Q ss_pred -HHHHhhC-CCCCCh-hhH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 044044 276 -FLKMKDE-NINPDV-VTY----TSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLEL 348 (508)
Q Consensus 276 -~~~~~~~-~~~~~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 348 (508)
++.+... +..|.. ..| .-.+-++...|+..++++.|+.+...+.+....+-..+..+|...+++++|..++..
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 3333221 111211 111 123445667788888888888888777654556777788888888888888888888
Q ss_pred HHHcCC-----CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-----------CCC--H-HHHHHHHHHHHhcCCH
Q 044044 349 MIWRGV-----NPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGC-----------MHD--V-VSYNTLINWYCKNKDV 409 (508)
Q Consensus 349 ~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~--~-~~~~~l~~~~~~~g~~ 409 (508)
+..... .++......|.-+|...+++++|..+++.+.+... .|| - ..+..++..+...|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 766431 22333456777888888888888888888876311 111 1 1234456667788888
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 410 EEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 410 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
.+|++.++++....+ -|......+...+...|.+.+|++.++..... -+-+..+....+.++...|++++|..+.+.+
T Consensus 433 ~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 433 PTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 888888888877643 37778888888888888888888888666654 2335566667777788888888888888777
Q ss_pred HH
Q 044044 490 RD 491 (508)
Q Consensus 490 ~~ 491 (508)
.+
T Consensus 511 ~~ 512 (822)
T PRK14574 511 IS 512 (822)
T ss_pred Hh
Confidence 64
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-18 Score=162.36 Aligned_cols=423 Identities=14% Similarity=0.083 Sum_probs=324.0
Q ss_pred HHHhhccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 044044 71 KERCKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILIN 150 (508)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 150 (508)
.+.+...|+.++..|++++|..+|-+..+..+. ..+..+-.++..+.+.|+++.+...|+...+.. +.+..+...|..
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d-~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADND-NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC-CccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHh
Confidence 334666788899999999999999999998877 236677788999999999999999999998863 445666677777
Q ss_pred HHHhcC----CcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhh----hcCCCCCHhhHHHHHHHH
Q 044044 151 CFCKMG----RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHR----VFACEPDVFTYNTLINGL 222 (508)
Q Consensus 151 ~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~ 222 (508)
.|...+ ..+.|..++.+.++.. +.|...|-.+...+-.. +...++.+|..+. ..+..+.....|.+...+
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 776664 5677888888877663 55777888887777654 4444477665543 445567889999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCC-----CCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHH
Q 044044 223 CRTGHTIVALNLFEEMANGNG-----EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPD-VVTYTSVIR 296 (508)
Q Consensus 223 ~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 296 (508)
...|++++|...|+.....-. +.+ -.+++.+-..+....-..++++.|.+.|..+.+. .|. +..|..+..
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~--~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEG--KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGC 538 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCcccc--ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhH
Confidence 999999999999999887611 000 1233334455677777888999999999999886 233 334444443
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHc-----
Q 044044 297 GFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRG-VNPNTYTYNTLIDGYCL----- 370 (508)
Q Consensus 297 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~----- 370 (508)
.....+...+|...+.+..... ..+...+..+...+.+...+..|.+-|..+.+.- ..+|..+.-.|.+.|.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 3344578899999999988753 4466677777878999889988888777666543 23577777777776553
Q ss_pred -------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 044044 371 -------TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQ 443 (508)
Q Consensus 371 -------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 443 (508)
.+..++|.++|.++++.. +.|...-|.++-+++..|++.+|..+|.+..+... -...+|..+.++|..+|+
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHH
Confidence 234788999999999876 67888889999999999999999999999998743 256678899999999999
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHHHHHHH
Q 044044 444 VERALKLFDEMRRN-HVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCL 504 (508)
Q Consensus 444 ~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 504 (508)
+..|+++|+...+. ....+..+...|.+++.+.|.+.+|.+.+...+.....-..+.||..
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 99999999887654 55667888999999999999999999999888876554455666654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-16 Score=159.93 Aligned_cols=186 Identities=15% Similarity=0.057 Sum_probs=114.7
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
..|++++|+..|+.+++..|. +..++..+...|.+.|++++|+..+++..+. .|+...|..++..+ +++++|.
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~--n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPD--NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHH
Confidence 447999999999999999988 7888899999999999999999999999886 45444444433222 8888898
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHH--------HHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHH-HHHHHhcCChHHHHH
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKG--------LCAESRIMEAAALFTKHRVFACEPDVFTYNTL-INGLCRTGHTIVALN 233 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~ 233 (508)
.+++++.... +-+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|++
T Consensus 129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 9998888763 2234444444433 4333 33333333 2222222233333333 566666666666666
Q ss_pred HHHHHHhCCCCCC------------------------ccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 044044 234 LFEEMANGNGEFG------------------------VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMK 280 (508)
Q Consensus 234 ~~~~~~~~~~~~~------------------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 280 (508)
++.++.+.+.... ...+.+...+..++..+.+.|+.++|.++++++.
T Consensus 204 lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 204 LYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 6665555432110 0012344555566666777777777776666553
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-15 Score=151.73 Aligned_cols=369 Identities=14% Similarity=0.070 Sum_probs=274.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 044044 114 FGCLAKNKHYDTVLSLFKRLNSAGLFPDI--YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAES 191 (508)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (508)
+-...+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|+..+++.... .+........+...+...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 33457899999999999999986 4553 234 8888888999999999999998821 1223334444467888999
Q ss_pred CHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHH
Q 044044 192 RIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDK 271 (508)
Q Consensus 192 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 271 (508)
++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++.... |+...+..++..+...++..+
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--------p~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--------PTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--------cchHHHHHHHHHHHhcchHHH
Confidence 9999999999999875 3357777788899999999999999999998865 555556555555555677767
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH-----------------------------------------
Q 044044 272 AKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRL----------------------------------------- 310 (508)
Q Consensus 272 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----------------------------------------- 310 (508)
|++.++++.+.. +.+...+..+..+..+.|-...|.++
T Consensus 188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 999999999873 22455555555555554443333333
Q ss_pred -------HHHHHHc-CCCCC-HHh----HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHH
Q 044044 311 -------FIEMMDQ-GVQPD-VVT----FSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHA 377 (508)
Q Consensus 311 -------~~~~~~~-~~~~~-~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 377 (508)
++.+... +..|. ... ..-.+-++...|++.++++.++.+...+.+....+-..+..+|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 2332221 11122 111 1233457788899999999999999888665667888999999999999999
Q ss_pred HHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCH---hHHHHHHHHH
Q 044044 378 RKLFVSMESNG-----CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGI-----------KPTV---VTYNTLFLGL 438 (508)
Q Consensus 378 ~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~~---~~~~~l~~~~ 438 (508)
..+++++.... .+++......|..+|...+++++|..+++++.+..+ .||. ..+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 99999987653 123444467889999999999999999999987421 1222 2334567788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHH
Q 044044 439 FEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIV 499 (508)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 499 (508)
...|+..+|++.++++... -+-|......+.+.+...|.+.+|.+.++.... +.|+..
T Consensus 427 ~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~ 484 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSL 484 (822)
T ss_pred HHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccH
Confidence 8999999999999999876 456899999999999999999999999977764 466643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-15 Score=133.62 Aligned_cols=373 Identities=13% Similarity=0.140 Sum_probs=273.7
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 185 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (508)
...++..+|.++++--..+.|.+++++......+.+..+||.+|.+-.- ....+++.+|......||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 7789999999999999999999999999887778999999999977543 223789999999999999999999999
Q ss_pred HHHhcCCHHH----HHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHH-HHHHHHHHHhC--CCCCCccccCCHhHHHH
Q 044044 186 GLCAESRIME----AAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIV-ALNLFEEMANG--NGEFGVVCKPNTVTYNT 258 (508)
Q Consensus 186 ~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 258 (508)
+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++... |.++....+.|...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 9999998775 55778899999999999999999999999888754 55566665543 44444445556677888
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhC----CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 044044 259 IIDGLCKEGFVDKAKELFLKMKDE----NINPD---VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMD 331 (508)
Q Consensus 259 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 331 (508)
.++.|.+..+.+-|.++-.-+... -+.|+ ..-|..+....|+....+.-...|+.|.-.-+-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 899999999999998887766533 12222 23466777788888999999999999988878889999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCC-C---H-----H-----HHHHHH-------HHHHhCCCC
Q 044044 332 ELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTD-K---I-----D-----HARKLF-------VSMESNGCM 390 (508)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---~-----~-----~A~~~~-------~~~~~~~~~ 390 (508)
+..-.|.++-..+++.+++..|...+......++..+++.. . . . -|..++ .++.+. .
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~ 519 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--D 519 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--c
Confidence 99999999999999999998876655555555555555433 1 1 0 111111 122222 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044044 391 HDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGI----KPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTY 466 (508)
Q Consensus 391 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 466 (508)
......+.++-.+.+.|..++|.+++..+...+- .|......-++..-...++...|..+++-|...+...-...-
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La 599 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLA 599 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHH
Confidence 4455677777778889999999999988865532 233333445666667778888888888888766543322233
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 044044 467 NNFIDGLCKSGFVLEALE 484 (508)
Q Consensus 467 ~~li~~~~~~g~~~~A~~ 484 (508)
+.+...|.-+....+|+.
T Consensus 600 ~RI~e~f~iNqeq~~~ls 617 (625)
T KOG4422|consen 600 QRIMEDFAINQEQKEALS 617 (625)
T ss_pred HHHHHhcCcCHHHHHHHh
Confidence 444444433333333333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-16 Score=149.42 Aligned_cols=408 Identities=13% Similarity=0.058 Sum_probs=269.6
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCCcchHH
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLF--PDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
..+..++.++..+...++. ++.+.+.|...+...|+++.++.+.+.+...... .-...|-.+.+++...|++++|.
T Consensus 250 ~s~~~~~~ll~~ay~~n~~--nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNE--NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCC--CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 4567777777777777776 7788888888888888888888888888765311 12345777888888889999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcC----ChHHHHHHHHHH
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTG----HTIVALNLFEEM 238 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~ 238 (508)
..|.+..+....-....+.-|.+.|.+.|+++.+...|+++.... +.+..+...|...|...+ ..++|..++.+.
T Consensus 328 ~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 328 KYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 888887765322223344567788888888988888888887763 335666777777777664 456677777776
Q ss_pred HhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHh----hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 239 ANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMK----DENINPDVVTYTSVIRGFCYANDWNEAKRLFIEM 314 (508)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 314 (508)
.+.. +.|...|..+...+....-+.. +.+|..+. ..+..+.+...|.+...+...|++++|...|...
T Consensus 407 ~~~~-------~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 407 LEQT-------PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred Hhcc-------cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 6653 5567777777776665544433 66555443 3344566777888888888888888888888777
Q ss_pred HHc---CCCCCH------HhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-------------------------------
Q 044044 315 MDQ---GVQPDV------VTFSVIMDELCKNGKMDKASRLLELMIWRGV------------------------------- 354 (508)
Q Consensus 315 ~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------- 354 (508)
... ...++. .+-..+..++-..++.+.|.++|..+.+...
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 654 112222 1222344444555566666666666655411
Q ss_pred --CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHH
Q 044044 355 --NPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNG-CMHDVVSYNTLINWYCK------------NKDVEEALSLYSEM 419 (508)
Q Consensus 355 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~ 419 (508)
..++..+..+...+.+...+..|.+-|..+.+.- ..+|..+.-.|+..|.. .+..++|+++|.+.
T Consensus 559 ~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 559 IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 1123333333334444444444444333333221 12354555555554432 23568899999988
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCccCH
Q 044044 420 LSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS-KYELNI 498 (508)
Q Consensus 420 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~ 498 (508)
++..++ |...-+.+.-+++..|++.+|..+|.+..+... .+..+|..+..+|..+|++-.|+++|+...+. ...-+.
T Consensus 639 L~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~ 716 (1018)
T KOG2002|consen 639 LRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRS 716 (1018)
T ss_pred HhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 887544 777778888899999999999999999988733 35667889999999999999999999997754 334455
Q ss_pred HHHHHHH
Q 044044 499 VSYNCLI 505 (508)
Q Consensus 499 ~~~~~ll 505 (508)
.+...|-
T Consensus 717 ~vl~~La 723 (1018)
T KOG2002|consen 717 EVLHYLA 723 (1018)
T ss_pred HHHHHHH
Confidence 5555554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-15 Score=151.80 Aligned_cols=264 Identities=9% Similarity=-0.055 Sum_probs=203.2
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhh
Q 044044 211 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVT 290 (508)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 290 (508)
+...|..+..++.. ++.++|+..+.+..... |+......+...+...|++++|...|+++... +|+...
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--------Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a 544 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--------PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNED 544 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--------CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHH
Confidence 56778888888776 78888999888887753 45444444455556899999999999987654 344455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL 370 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (508)
+..+...+.+.|++++|...+++..+.. +.+...+..+.....+.|++++|...+++.++. .|+...+..+..++.+
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~ 621 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQ 621 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 6677778888999999999999988764 333333334444455669999999999999876 4567788888899999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 044044 371 TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKL 450 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 450 (508)
.|+.++|...+++..+.. +.+...++.+..++...|++++|+..+++.++..+ -+...+..+..++...|++++|+..
T Consensus 622 lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 622 RHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998885 66778888888899999999999999999988743 3677888999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 451 FDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
+++..+... -+..+.........+..+++.|.+-+++...
T Consensus 700 l~~Al~l~P-~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 700 ARLVIDDID-NQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHhcCC-CCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999987532 2334555666667777778888887777654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-14 Score=137.76 Aligned_cols=354 Identities=14% Similarity=0.109 Sum_probs=242.9
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchH
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHG 161 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 161 (508)
+..|++++|..++.++++..|. +...|..|..+|-+.|+.+++...+-.+.-.. +-|...|..+.....+.|.+++|
T Consensus 150 farg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 3458999999999999999988 99999999999999999999988775554432 55778999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHh----hHHHHHHHHHhcCChHHHHHHHHH
Q 044044 162 FVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVF----TYNTLINGLCRTGHTIVALNLFEE 237 (508)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 237 (508)
.-+|.++++.. +++...+---...|-+.|+...|..-|.++.....+.|.. ....++..+...++-+.|++.++.
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999875 4455666667788899999999999999998875333322 223345667777888999999998
Q ss_pred HHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC---------------------------CCCChhh
Q 044044 238 MANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDEN---------------------------INPDVVT 290 (508)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------------------~~~~~~~ 290 (508)
...... -..+...++.++..+.+...++.+......+.... ..++..+
T Consensus 306 ~~s~~~-----~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 306 ALSKEK-----DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHhhcc-----ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 887432 23456677888888888888998888887776511 1222222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGV--QPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGY 368 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (508)
+ .++-++...+..+....+...+.+..+ .-+...|.-+..++...|++.+|..++..+......-+...|-.+..+|
T Consensus 381 ~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 381 I-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred H-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 1 122223333333333333333444432 2234466667777777777777777777777654444566777777777
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHhHHHHHHHHHHh
Q 044044 369 CLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK--------GIKPTVVTYNTLFLGLFE 440 (508)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~p~~~~~~~l~~~~~~ 440 (508)
...|..++|.+.|+.++... +.+...--.|...+.+.|+.++|.+.+..+... +..|+..........+..
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 77777777777777777653 344455556666677777777777777664421 233333333334444455
Q ss_pred cCCHHH
Q 044044 441 IHQVER 446 (508)
Q Consensus 441 ~g~~~~ 446 (508)
.|+.++
T Consensus 539 ~gk~E~ 544 (895)
T KOG2076|consen 539 VGKREE 544 (895)
T ss_pred hhhHHH
Confidence 555444
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.7e-14 Score=122.08 Aligned_cols=307 Identities=18% Similarity=0.243 Sum_probs=205.0
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC--cchHH-HHHHHHHhC-----------
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGR--VSHGF-VVLGRILRS----------- 171 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~-~~~~~~~~~----------- 171 (508)
.+++=|.|+. +..+|...++.-+|+.|.+.|++.+...-..|++.-+-.+. .--|. +.|-.|.+.
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 4555666665 45678999999999999999988777776666654332222 11111 111111111
Q ss_pred --------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044044 172 --------CFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 243 (508)
Q Consensus 172 --------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 243 (508)
-.+.+..++..+|.++|+.-..+.|.++|++......+.+..++|.+|.+-.- ....+++.+|....
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqk- 268 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQK- 268 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhh-
Confidence 13456778999999999999999999999998877778888899988876443 22378888888887
Q ss_pred CCCccccCCHhHHHHHHHHHHccCCHHHH----HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHc-
Q 044044 244 EFGVVCKPNTVTYNTIIDGLCKEGFVDKA----KELFLKMKDENINPDVVTYTSVIRGFCYANDWNE-AKRLFIEMMDQ- 317 (508)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~- 317 (508)
+.||..|+|+++++..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ +..++.+++..
T Consensus 269 -----m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 269 -----MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred -----cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 899999999999999999987754 5677888899999999999999998888877643 55555555432
Q ss_pred ---CC----CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCC---HHhHHHHHHHHHcCCCHHHHHHHHHH
Q 044044 318 ---GV----QPDVVTFSVIMDELCKNGKMDKASRLLELMIWRG----VNPN---TYTYNTLIDGYCLTDKIDHARKLFVS 383 (508)
Q Consensus 318 ---~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 383 (508)
.+ +.|...|...+..|.+..+.+-|.++..-..... +.|+ ..-|..+....++....+.-...|+.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 2244466667777777777777777665543221 1222 11234444555556666666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 384 MESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKG 423 (508)
Q Consensus 384 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 423 (508)
|.-.-+.|+..+...++++..-.|.++-.-++|.++...|
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 6555555555555555565555565555555555555443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-15 Score=131.12 Aligned_cols=386 Identities=14% Similarity=0.131 Sum_probs=226.4
Q ss_pred cCCCCCCCCChHHHHHHHHHhHHcCCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 044044 77 SGQGDINLITPNEALCIFDYMLRMHPSPPPV----SSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCF 152 (508)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (508)
.|..+++...+..|+++|+-++..-|. .+. ...+.+...+.+.|+++.|+.-|+...+. .|+..+-..|+-++
T Consensus 243 igni~~kkr~fskaikfyrmaldqvps-ink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~ 319 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQVPS-INKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICA 319 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhccc-cchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhh
Confidence 355567777889999999988887766 332 34555556677899999999999998875 57776655666666
Q ss_pred HhcCCcchHHHHHHHHHhCCCC------------CCHHhHHHHHH-----HHHhcC--CHHHHHHHHHHhhhcCCCC---
Q 044044 153 CKMGRVSHGFVVLGRILRSCFT------------PNAVTFTSLIK-----GLCAES--RIMEAAALFTKHRVFACEP--- 210 (508)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~~l~~-----~~~~~g--~~~~A~~~~~~~~~~~~~~--- 210 (508)
...|+.++-.+.|.+|+..... |+....+..+. -+-+.. +.++++-.--++...-+.|
T Consensus 320 f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa 399 (840)
T KOG2003|consen 320 FAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA 399 (840)
T ss_pred eecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh
Confidence 6778888888888888764222 22333332221 111111 1111111111111100011
Q ss_pred ------------------CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHH------------
Q 044044 211 ------------------DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTII------------ 260 (508)
Q Consensus 211 ------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------------ 260 (508)
-...-..-...+.+.|+++.|+++++-+...+. +.-...-+.|.
T Consensus 400 ~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn------k~~saaa~nl~~l~flqggk~~~ 473 (840)
T KOG2003|consen 400 AGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN------KTASAAANNLCALRFLQGGKDFA 473 (840)
T ss_pred cccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc------hhhHHHhhhhHHHHHHhcccchh
Confidence 011111223456778888888888877776552 11111111111
Q ss_pred ------------------------HHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 261 ------------------------DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMD 316 (508)
Q Consensus 261 ------------------------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 316 (508)
......|++++|.+.|.+.....-.-....||. .-.+...|+.++|++.|-++..
T Consensus 474 ~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~ 552 (840)
T KOG2003|consen 474 DAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHA 552 (840)
T ss_pred HHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHH
Confidence 112235667777777777665422222222222 2234556777777777766544
Q ss_pred cCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 044044 317 QGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSY 396 (508)
Q Consensus 317 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 396 (508)
. +..+..+...+.+.|-...+...|++++.+.... ++.|+.+...|...|-+.|+-..|.+.+-.--+- ++-+..+.
T Consensus 553 i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~i 629 (840)
T KOG2003|consen 553 I-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETI 629 (840)
T ss_pred H-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHH
Confidence 2 2234556666666777777777777777665543 4445667777777777777777776665444332 35566666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044044 397 NTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGL-FEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCK 475 (508)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 475 (508)
.-|...|....-+++|+.+|++..- +.|+..-|..++..| .+.|++++|.++++...+. ++.|......|++.+..
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcc
Confidence 6667777777777777777776654 466777776665444 4567777777777777665 55567777777776665
Q ss_pred cCC
Q 044044 476 SGF 478 (508)
Q Consensus 476 ~g~ 478 (508)
.|.
T Consensus 707 lgl 709 (840)
T KOG2003|consen 707 LGL 709 (840)
T ss_pred ccc
Confidence 553
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-13 Score=124.71 Aligned_cols=351 Identities=13% Similarity=0.057 Sum_probs=189.0
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH----HHhCCCCCCHHhHHHHHHHHHhcCCc
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKR----LNSAGLFPDIYTHSILINCFCKMGRV 158 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~ 158 (508)
+...|+.|..+++.+.+.-|. +...|-.-...--.+|+.+...+++.+ +...|+..+...|..=...|-..|..
T Consensus 418 rLetYenAkkvLNkaRe~ipt--d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREIIPT--DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 345567777777777777666 666776666666667777777777655 33456666666666666666666666
Q ss_pred chHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 044044 159 SHGFVVLGRILRSCFTP--NAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFE 236 (508)
Q Consensus 159 ~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 236 (508)
-.+..+....+..|++. -..+|..-...|.+.+.++-|..+|....+.- +.+...|......--..|..++-..+|+
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 66666666665555432 23455555566666666666666666655432 3344455555554455566666666666
Q ss_pred HHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 237 EMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMD 316 (508)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 316 (508)
+.... ++.....|......+-..|+...|..++....+.. +.+...|..-+..-....+++.|..+|.+...
T Consensus 575 kav~~-------~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 575 KAVEQ-------CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHh-------CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 66554 34444555555555566666666666666665542 22455555555555666666666666665554
Q ss_pred cCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 044044 317 QGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPN-TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVS 395 (508)
Q Consensus 317 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 395 (508)
. .|+...|.--+....-.+..++|.+++++.++. -|+ ...|..+.+.+-+.++.+.|.+.|..-.+. ++.....
T Consensus 647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipL 721 (913)
T KOG0495|consen 647 I--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPL 721 (913)
T ss_pred c--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchH
Confidence 3 344455554455555555666666666555543 222 334444444444444444444444433332 1223333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKL 450 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 450 (508)
|-.+...-.+.|.+-.|..++++..-++++ +...|...+..-.+.|+.+.|..+
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHH
Confidence 333333333444444444444444433322 333444444444444444444333
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-15 Score=131.93 Aligned_cols=402 Identities=14% Similarity=0.155 Sum_probs=266.0
Q ss_pred hHHHHHHHHHhHHcCCCCCCcccH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC------HHhHHHHHHHHHhcCCcc
Q 044044 87 PNEALCIFDYMLRMHPSPPPVSSF-NILFGCLAKNKHYDTVLSLFKRLNSAGLFPD------IYTHSILINCFCKMGRVS 159 (508)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~ 159 (508)
..+|+..|+-+++..-. |+.... -.+...+.+..++.+|++.|+..+.. .|+ ....+.+...+.+.|+++
T Consensus 217 ~~ealntyeiivknkmf-~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~nigvtfiq~gqy~ 293 (840)
T KOG2003|consen 217 TAEALNTYEIIVKNKMF-PNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIGVTFIQAGQYD 293 (840)
T ss_pred HHHHhhhhhhhhccccc-CCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcCeeEEecccch
Confidence 35566666655554444 444332 24556677788889999998887765 333 224455556678899999
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC------------CHhhHHHHH-----HHH
Q 044044 160 HGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEP------------DVFTYNTLI-----NGL 222 (508)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~~~l~-----~~~ 222 (508)
.|+.-|+...+. .|+..+-..|+-++..-|+.++..+.|.+|...-..+ +....+.-+ .-.
T Consensus 294 dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ 371 (840)
T KOG2003|consen 294 DAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNM 371 (840)
T ss_pred hhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHH
Confidence 999999988776 5777766666767777799999999999987653222 222222222 111
Q ss_pred HhcC--ChHHHHHHHHHHHhCCCCCCccccCCHh---------------------HHHHHHHHHHccCCHHHHHHHHHHH
Q 044044 223 CRTG--HTIVALNLFEEMANGNGEFGVVCKPNTV---------------------TYNTIIDGLCKEGFVDKAKELFLKM 279 (508)
Q Consensus 223 ~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~~~g~~~~a~~~~~~~ 279 (508)
-+.+ +.++++-.--++..-- +.|+-. .-..-..-+.+.|+++.|.+++.-.
T Consensus 372 ek~~ka~aek~i~ta~kiiapv------i~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 372 EKENKADAEKAIITAAKIIAPV------IAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHhhhhhHHHHHHHHHHHhccc------cccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 1111 1222222222221110 112110 0112245688999999999998777
Q ss_pred hhCCCCCChhhHHHHH------------------------------------HHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 044044 280 KDENINPDVVTYTSVI------------------------------------RGFCYANDWNEAKRLFIEMMDQGVQPDV 323 (508)
Q Consensus 280 ~~~~~~~~~~~~~~l~------------------------------------~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 323 (508)
.+..-......-+.|- +.....|++++|.+.|++.+..+..-..
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 6543221111111110 0112357888999999888775322222
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044044 324 VTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWY 403 (508)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (508)
..|+ +.-.+-..|+.++|+..|-.+..- +..+..+...+...|....+...|++++-+.... ++.|+.....|...|
T Consensus 526 alfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dly 602 (840)
T KOG2003|consen 526 ALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLY 602 (840)
T ss_pred HHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHh
Confidence 2333 333567789999999988766533 2336777778888899999999999999887665 577899999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHH
Q 044044 404 CKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFID-GLCKSGFVLEA 482 (508)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A 482 (508)
-+.|+-..|.+.+-+--+. ++-|..+...|...|....-+++++.+|++..- ++|+..-|..++. ++.+.|++++|
T Consensus 603 dqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred hcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHH
Confidence 9999999999987665544 556888999999999999999999999998764 6899999988776 45788999999
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHc
Q 044044 483 LELFRAIRDSKYELNIVSYNCLID 506 (508)
Q Consensus 483 ~~~~~~m~~~g~~p~~~~~~~ll~ 506 (508)
.++|+...++ +.-|.....-|+.
T Consensus 680 ~d~yk~~hrk-fpedldclkflvr 702 (840)
T KOG2003|consen 680 FDLYKDIHRK-FPEDLDCLKFLVR 702 (840)
T ss_pred HHHHHHHHHh-CccchHHHHHHHH
Confidence 9999998754 5556666655554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.8e-14 Score=133.13 Aligned_cols=364 Identities=12% Similarity=0.060 Sum_probs=283.8
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 044044 117 LAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEA 196 (508)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 196 (508)
+...|++++|..++.+.++.. +.....|..|...|-..|+.+++...+-.+.-.. +.|...|..+.....+.|.+++|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 444599999999999999875 6678899999999999999999998776665443 45678999999999999999999
Q ss_pred HHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHH----HHHHHHHHccCCHHHH
Q 044044 197 AALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTY----NTIIDGLCKEGFVDKA 272 (508)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a 272 (508)
.-.|.+.++.. +++...+..-+..|.+.|+...|..-|.++.... .+.|..-. -.++..+...++-+.|
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~------p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD------PPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC------CchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999885 5566666677889999999999999999999875 22222222 3345667777777999
Q ss_pred HHHHHHHhhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---------------------------CCHH
Q 044044 273 KELFLKMKDE-NINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ---------------------------PDVV 324 (508)
Q Consensus 273 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------------------------~~~~ 324 (508)
.+.++..... +-..+...++.++..+.+..+++.|......+...... ++..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 9999887663 22345677889999999999999999988887662111 1222
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRG--VNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINW 402 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 402 (508)
. ..++-++......+....+.....+.. +.-+...|.-+..+|...|++.+|+.+|..+.......+...|-.+..+
T Consensus 380 v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 V-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred h-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 2 123334555566666666666666666 3334678899999999999999999999999988666678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHH
Q 044044 403 YCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMR--------RNHVAADTYTYNNFIDGLC 474 (508)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~ 474 (508)
|...|.+++|.+.|+..+...+ .+...-..|...+.+.|+.++|.+.++.+. ..+..|+........+.+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 9999999999999999998732 245556678888999999999999999854 2345666667777778899
Q ss_pred hcCCHHHHHHHHHHHHH
Q 044044 475 KSGFVLEALELFRAIRD 491 (508)
Q Consensus 475 ~~g~~~~A~~~~~~m~~ 491 (508)
..|+.++-+.+-..|++
T Consensus 538 ~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVD 554 (895)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 99999987777777764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-12 Score=119.15 Aligned_cols=388 Identities=12% Similarity=0.034 Sum_probs=310.4
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHH
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFV 163 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 163 (508)
..++++|+.++..+.+--|. +...|.+ |.+..-|+.|..++++..+. ++-+...|......--.+|+.+...+
T Consensus 389 lE~~~darilL~rAveccp~--s~dLwlA----larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 389 LEEPEDARILLERAVECCPQ--SMDLWLA----LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred ccChHHHHHHHHHHHHhccc--hHHHHHH----HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 34566777777777777666 5555544 44556688888888888875 67788888887777778888888888
Q ss_pred HHHHHH----hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHH
Q 044044 164 VLGRIL----RSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPD--VFTYNTLINGLCRTGHTIVALNLFEE 237 (508)
Q Consensus 164 ~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 237 (508)
++.+.+ ..|+..+...|-.=...|-..|..-.+..+....+..|++-. ..+|..-...|.+.+.++-|..+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 776644 357788888888888888888888888888888887775533 45888888999999999999999999
Q ss_pred HHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 238 MANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
..... +.+...|......--..|..++...+|+++... ++-....|......+-..|+...|..++.+..+.
T Consensus 542 alqvf-------p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~ 613 (913)
T KOG0495|consen 542 ALQVF-------PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA 613 (913)
T ss_pred HHhhc-------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Confidence 88863 566778888887777889999999999999876 3445667777777788889999999999998886
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044044 318 GVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYN 397 (508)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (508)
. +.+...|-.-+........++.|..+|.+.... .|+..+|.--+....-.++.++|.+++++.++. ++.-...|.
T Consensus 614 ~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~l 689 (913)
T KOG0495|consen 614 N-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWL 689 (913)
T ss_pred C-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHH
Confidence 3 346678888888889999999999999988754 667777877777777789999999999998886 244566788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044044 398 TLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSG 477 (508)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 477 (508)
.+...+.+.++.+.|...|..-.+. ++-....|..|...-.+.|.+-.|..++++..-.+. -+...|...|..-.+.|
T Consensus 690 mlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~g 767 (913)
T KOG0495|consen 690 MLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAG 767 (913)
T ss_pred HHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcC
Confidence 8889999999999999998776665 333556777787888888999999999999887654 48889999999999999
Q ss_pred CHHHHHHHHHHHHHc
Q 044044 478 FVLEALELFRAIRDS 492 (508)
Q Consensus 478 ~~~~A~~~~~~m~~~ 492 (508)
+.+.|..++-+.++.
T Consensus 768 n~~~a~~lmakALQe 782 (913)
T KOG0495|consen 768 NKEQAELLMAKALQE 782 (913)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999988887753
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-13 Score=122.96 Aligned_cols=400 Identities=14% Similarity=0.079 Sum_probs=268.0
Q ss_pred hhccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHH
Q 044044 74 CKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD-IYTHSILINCF 152 (508)
Q Consensus 74 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 152 (508)
.+..|.-++..|++++|++.|.+++...|. .+.-|.....+|...|+|+++++.-.+.++. .|+ ...+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~--epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPD--EPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCC--CchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 456788889999999999999999999876 5788999999999999999999999888875 455 33556666777
Q ss_pred HhcCCcchHHHHHHHHH-hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcC--CCCCHhhHHHHHHHHH------
Q 044044 153 CKMGRVSHGFVVLGRIL-RSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFA--CEPDVFTYNTLINGLC------ 223 (508)
Q Consensus 153 ~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~------ 223 (508)
-..|++++|+.-..-.- -.|+. |..+--.+=+.+-+.+. ..+.+-+. +.+ +-|......+....+.
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~a~-~ka~e~~k---~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKKQAM-KKAKEKLK---ENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHHHH-HHHHHhhc---ccCCCCCCcHHHHHHHHhhcccccccc
Confidence 77888877764322211 11111 11111111111111110 11111111 111 1122222222222111
Q ss_pred -------------------hcC---ChHHHHHHHHHHHhCCCCCCccccCC---------HhHHHHHHHHHHccCCHHHH
Q 044044 224 -------------------RTG---HTIVALNLFEEMANGNGEFGVVCKPN---------TVTYNTIIDGLCKEGFVDKA 272 (508)
Q Consensus 224 -------------------~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~a 272 (508)
..+ .+.+|.+.+.+-....... ...+ ..+.......+.-.|+.-.|
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~---~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESS---LSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhh---ccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 011 2333443333322211000 0111 12222223334557899999
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 044044 273 KELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWR 352 (508)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 352 (508)
.+-|+..+.....+ ...|..+...|....+.++....|.+..+.+ +.|..+|..-...+.-.+++++|..-|++.+..
T Consensus 346 ~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 346 QEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999998874433 3337778888999999999999999998875 557778888888888999999999999999976
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CC
Q 044044 353 GVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIK-----PT 427 (508)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~ 427 (508)
.. .+...|-.+..+..+.+++++++..|++..++ +|..+..|+.....+...+++++|.+.|+..++.... .+
T Consensus 424 ~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 424 DP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred Ch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence 42 25667777777778899999999999999877 4777899999999999999999999999999875322 12
Q ss_pred HhHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 428 VVTY--NTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 428 ~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
...+ -.++. +.-.+++..|++++++..+.+.. ....|..|...-.+.|+.++|+++|++...
T Consensus 502 ~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 502 AAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred chhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2211 12222 22448999999999999986433 456788999999999999999999998763
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.8e-14 Score=133.06 Aligned_cols=289 Identities=14% Similarity=0.013 Sum_probs=203.2
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCH--hHHHHHHHHHH
Q 044044 188 CAESRIMEAAALFTKHRVFACEPD-VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT--VTYNTIIDGLC 264 (508)
Q Consensus 188 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 264 (508)
...|+++.|.+.+.+..+. .|+ ...+-....++.+.|+++.|.+++.+..+.. |+. .........+.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--------p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--------GNDNILVEIARTRILL 164 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CcCchHHHHHHHHHHH
Confidence 3458888999888877665 333 3344555677778899999999998887643 333 23344577788
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH---HhcCChhH
Q 044044 265 KEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDEL---CKNGKMDK 341 (508)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~ 341 (508)
..|+++.|.+.++.+.+.. +-+...+..+...+.+.|+|++|.+.+..+.+.+..+.......-..++ ...+..++
T Consensus 165 ~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8899999999999888874 3356678888888899999999999999988876443222211111111 23333333
Q ss_pred HHHHHHHHHHcCC---CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHH
Q 044044 342 ASRLLELMIWRGV---NPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVS---YNTLINWYCKNKDVEEALSL 415 (508)
Q Consensus 342 a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~ 415 (508)
+.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.. |+... ...........++.+.+.+.
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHH
Confidence 4445555554422 1377888888899999999999999999988874 33321 12222223445788889999
Q ss_pred HHHHHHCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 416 YSEMLSKGIKPTV--VTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 416 ~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
+++..+..+ -|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 322 ~e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 322 IEKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 988887632 244 56678899999999999999999954444457888888899999999999999999998865
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-12 Score=114.36 Aligned_cols=395 Identities=12% Similarity=0.128 Sum_probs=278.3
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCcch
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD-IYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 160 (508)
.++++++.|..+|+.++..+.. +...|-..+.+-.++++...|..++++.+.. -|- ...|--.+..--..|++.-
T Consensus 84 esq~e~~RARSv~ERALdvd~r--~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYR--NITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHH
Confidence 4567889999999999987755 8889999999999999999999999998875 333 2345555555567789999
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 161 GFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
|.++|++-..- .|+...|.+.|..=.+.+.++.|..+|++.... .|++..|......-.+.|+..-|..+|+...+
T Consensus 160 aRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 160 ARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999988765 789999999999988999999999999998765 68888888888888888999888888888776
Q ss_pred CCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC-------------------------------------
Q 044044 241 GNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDEN------------------------------------- 283 (508)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------------------------------- 283 (508)
.-+. -.-+...+.+....-.++..++.|.-+|.-.++.-
T Consensus 236 ~~~~----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 236 FLGD----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred Hhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 4311 01122334444433334445555555554443320
Q ss_pred ------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--hHHH----HHH-H---HHhcCChhHHHHHHH
Q 044044 284 ------INPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV--TFSV----IMD-E---LCKNGKMDKASRLLE 347 (508)
Q Consensus 284 ------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~----l~~-~---~~~~~~~~~a~~~~~ 347 (508)
.+.|-.+|--.+..-...|+.+...++|+..+.. ++|-.. .|.. .++ + -....+.+.+.+++.
T Consensus 312 E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 312 EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1223444555555555667777777777777654 343211 1111 111 1 123566777777777
Q ss_pred HHHHcCCCCCHHhHHHH----HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 348 LMIWRGVNPNTYTYNTL----IDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKG 423 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 423 (508)
..++. ++....|+.-+ .....++.++..|.+++...+.. .|-..++...|..-.+.++++.+..++++.++-+
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 77653 33334444333 33344667788888888776654 6777788888888888899999999999999875
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044044 424 IKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH-VAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSK 493 (508)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 493 (508)
+. |-.+|......-...|+.+.|..+|+-+++.. .......|.+.|+--...|.++.|..+|+++++..
T Consensus 468 Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 468 PE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 44 67788888887788899999999999888652 33345578888888888999999999999998653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.8e-14 Score=130.75 Aligned_cols=283 Identities=14% Similarity=0.065 Sum_probs=195.4
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCHhh-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHH--HHHHHHHcc
Q 044044 190 ESRIMEAAALFTKHRVFACEPDVFT-YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYN--TIIDGLCKE 266 (508)
Q Consensus 190 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~ 266 (508)
.|+++.|.+.+.+..... +++.. |........+.|+++.|...+.++.+.. |+..... .....+...
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--------~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--------DNDQLPVEITRVRIQLAR 166 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHHC
Confidence 488888887777655432 12233 3333444477888888888888887643 4433222 335677788
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------hHHHHHHHHHhcCCh
Q 044044 267 GFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV-------TFSVIMDELCKNGKM 339 (508)
Q Consensus 267 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~ 339 (508)
|++++|.+.++++.+.. +-+......+...|.+.|+|++|.+++..+.+.+..++.. .|..++.......+.
T Consensus 167 g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 167 NENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 88888888888887764 3356777778888888888888888888888765442221 222333333344445
Q ss_pred hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 340 DKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEM 419 (508)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (508)
+...++++...+. .+.++.....+...+...|+.++|.+++++..+. +++.... ++.+....++.+++++..++.
T Consensus 246 ~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 246 EGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHH
Confidence 5555666555433 2346777788888888889999998888888774 4555322 233344558888888888888
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 420 LSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 420 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.+..+ -|...+..+...|...+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 321 lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 321 IKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 87643 35666778888888889999999999888874 67888888888888889999999888887753
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.8e-14 Score=130.77 Aligned_cols=283 Identities=11% Similarity=0.056 Sum_probs=197.0
Q ss_pred cCCcchHHHHHHHHHhCCCCCCHHhHHHH-HHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhH--HHHHHHHHhcCChHHH
Q 044044 155 MGRVSHGFVVLGRILRSCFTPNAVTFTSL-IKGLCAESRIMEAAALFTKHRVFACEPDVFTY--NTLINGLCRTGHTIVA 231 (508)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A 231 (508)
.|+++.|.+.+....+.. +++..+..+ .....+.|+++.|...+.++.+. .|+.... ......+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 578888887777654432 223333333 34446778888888888887765 4444322 2336677788888888
Q ss_pred HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCh-------hhHHHHHHHHHhcCCH
Q 044044 232 LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDV-------VTYTSVIRGFCYANDW 304 (508)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~ 304 (508)
...++++.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.
T Consensus 173 l~~l~~~~~~~-------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 173 RHGVDKLLEVA-------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred HHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 88888887764 445677778888888888888888888888876544222 1223333333344555
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 044044 305 NEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSM 384 (508)
Q Consensus 305 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (508)
+...++++.+.+. .+.+......+...+...|+.++|.+++++..+. +++.... ++.+....++.+++.+..+..
T Consensus 246 ~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 246 EGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHH
Confidence 6666666665433 2446677778888888888999988888888874 4444222 233444568888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 385 ESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 385 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
.+.. +.|...+..+...+.+.|++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.+++++...
T Consensus 321 lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 321 IKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7764 567777888888888889999999999888875 67888888888888889999999888887654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.1e-14 Score=118.29 Aligned_cols=295 Identities=16% Similarity=0.168 Sum_probs=135.2
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHH
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFV 163 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 163 (508)
.+++++|.++|-++++.+|. +.++.-.|.+.+.+.|..+.|+.+.+.+.++ ||.. +.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~--t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT-~~----------------- 104 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE--TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLT-FE----------------- 104 (389)
T ss_pred hcCcchHHHHHHHHHhcCch--hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCc-hH-----------------
Confidence 34555555555555554444 4445555555555555555555555555442 2210 00
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044044 164 VLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 243 (508)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 243 (508)
........|..-|...|-++.|+.+|..+.+.+ .--......|+..|....+|++|+++-+++...++
T Consensus 105 -----------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 105 -----------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred -----------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 001122334444555555555555555554432 22334445555555555555555555555554442
Q ss_pred CCCccccCC-HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044044 244 EFGVVCKPN-TVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPD 322 (508)
Q Consensus 244 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 322 (508)
.. .... ...|--+...+....+.+.|..++.+..+.+.+ .+..-..+.......|+++.|.+.++.+.+.+..--
T Consensus 173 q~---~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 173 QT---YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred cc---chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH
Confidence 10 0001 123344444444555555555555555544211 223333344455555555555555555555432222
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINW 402 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 402 (508)
..+...+..+|...|+.++....+..+.+....++ .-..+.+......-.+.|...+.+-... .|+...+..++..
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~ 324 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHh
Confidence 33445555556666666666666555554422222 2222333223333344444444333332 3566555555554
Q ss_pred HHh---cCCHHHHHHHHHHHHH
Q 044044 403 YCK---NKDVEEALSLYSEMLS 421 (508)
Q Consensus 403 ~~~---~g~~~~A~~~~~~~~~ 421 (508)
... .|...+.+.+++.|..
T Consensus 325 ~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 325 HLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred hhccccccchhhhHHHHHHHHH
Confidence 432 2334444555555544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-13 Score=129.43 Aligned_cols=293 Identities=7% Similarity=-0.015 Sum_probs=202.8
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHH
Q 044044 153 CKMGRVSHGFVVLGRILRSCFTPNA-VTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVA 231 (508)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 231 (508)
...|+++.|.+.+.+..+.. |+. ..+-.....+...|+.++|.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35688888888888776653 333 333444567777889999999888876653222223344457778888999999
Q ss_pred HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHH-HHHHH---HHhcCCHHHH
Q 044044 232 LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYT-SVIRG---FCYANDWNEA 307 (508)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~---~~~~g~~~~a 307 (508)
...++.+.+.. |.+...+..+...+...|++++|.+.+..+.+.+.. +...+. .-..+ ....+..++.
T Consensus 173 l~~l~~l~~~~-------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 173 RHGVDKLLEMA-------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred HHHHHHHHHhC-------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999988875 446677888888899999999999999988887644 322221 11111 1223333333
Q ss_pred HHHHHHHHHcC---CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHh-HHHHHHHHHcCCCHHHHHHHHHH
Q 044044 308 KRLFIEMMDQG---VQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYT-YNTLIDGYCLTDKIDHARKLFVS 383 (508)
Q Consensus 308 ~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~ 383 (508)
.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+......... ...........++.+.+.+.++.
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 44555544432 123677888888899999999999999999988643221111 11122223445778888888888
Q ss_pred HHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 384 MESNGCMHDV--VSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 384 ~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
..+.. +.|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 325 ~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 325 QAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 87763 4455 667788999999999999999999544444578888888999999999999999999987653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=142.94 Aligned_cols=263 Identities=19% Similarity=0.142 Sum_probs=110.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 044044 217 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIR 296 (508)
Q Consensus 217 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 296 (508)
.+...+.+.|++++|++++++...... .+.|...|..+...+...++++.|.+.++++...+.. +...+..++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~-----~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~ 86 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA-----PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQ 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 557788889999999999965443320 1345566777777888889999999999999876433 5556777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHcCCCHH
Q 044044 297 GFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRG-VNPNTYTYNTLIDGYCLTDKID 375 (508)
Q Consensus 297 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 375 (508)
. ...+++++|.++++...+. .++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.+
T Consensus 87 l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 87 L-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH
T ss_pred c-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 6 6889999999998877654 2456667778888899999999999998877543 3456778888889999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 376 HARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 376 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
+|.+.+++..+.. |.|....+.++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|+.++++..
T Consensus 164 ~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 164 KALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc
Confidence 9999999998875 4467888889999999999999888888877763 3456677889999999999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 456 RNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 456 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
+. .+.|......+.+++...|+.++|.++.++...
T Consensus 242 ~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 242 KL-NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HH-STT-HHHHHHHHHHHT-----------------
T ss_pred cc-ccccccccccccccccccccccccccccccccc
Confidence 75 344888888999999999999999998887653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-12 Score=112.27 Aligned_cols=395 Identities=12% Similarity=0.125 Sum_probs=270.8
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
.......|+.+++.++..-|. -...|-..+.+--..|+...|.++|++..+ ..|+...|.+.|+.-.+.+..+.|.
T Consensus 119 knk~vNhARNv~dRAvt~lPR--VdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR 194 (677)
T KOG1915|consen 119 KNKQVNHARNVWDRAVTILPR--VDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERAR 194 (677)
T ss_pred hhhhHhHHHHHHHHHHHhcch--HHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHH
Confidence 455667777777777776665 444566666666667777777777777765 3677777777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC--CCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACE--PDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
.++++.+-. .|++..|--....=.++|.+..|..+|....+.-.. .+...+.+...--.++..++.|.-+|+-...
T Consensus 195 ~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld 272 (677)
T KOG1915|consen 195 SIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALD 272 (677)
T ss_pred HHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776643 467777777777667777777777777665543101 0112222222222233334443333332221
Q ss_pred CCC----------------CCCc---------------------cccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 044044 241 GNG----------------EFGV---------------------VCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDEN 283 (508)
Q Consensus 241 ~~~----------------~~~~---------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 283 (508)
.-+ .+|. .-+-|-.+|-..+..-...|+.+...++|++.+..
T Consensus 273 ~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan- 351 (677)
T KOG1915|consen 273 HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN- 351 (677)
T ss_pred hcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-
Confidence 110 0000 02446677888888888899999999999999876
Q ss_pred CCCCh--hhHHHHHH-----HH---HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH----HhcCChhHHHHHHHHH
Q 044044 284 INPDV--VTYTSVIR-----GF---CYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDEL----CKNGKMDKASRLLELM 349 (508)
Q Consensus 284 ~~~~~--~~~~~l~~-----~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~ 349 (508)
++|-. ..|..-|. ++ ....+.+.+.++|+..++. ++....||.-+--.| .+..++..|.+++..+
T Consensus 352 vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 352 VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 45421 12222222 11 3468999999999999884 555566666554444 4678999999999998
Q ss_pred HHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH
Q 044044 350 IWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKG-IKPTV 428 (508)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~ 428 (508)
+ |..|...++...|..-.+.+++|.+..++++.++-+ |-+..+|......-...|+.+.|..+|.-++... .....
T Consensus 431 I--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 431 I--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred h--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 8 678899999999999999999999999999999986 6688889988888889999999999999998762 22234
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 044044 429 VTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLC-----KSG-----------FVLEALELFRAIR 490 (508)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-----~~g-----------~~~~A~~~~~~m~ 490 (508)
..|-..|.--...|.++.|..+++++.+. .+...+|.+...--. +.| ....|.++|++..
T Consensus 508 llwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 508 LLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 45666677677899999999999999975 234446665554332 334 5567888888775
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.2e-12 Score=111.82 Aligned_cols=376 Identities=11% Similarity=-0.013 Sum_probs=259.7
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCH-Hh-HHHH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNA-VT-FTSL 183 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~-~~~l 183 (508)
|...+-..+..+.+.|....|++.|...... .+-.=..|..|...+. + ++........ .+.+. .. --.+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~----~e~~~~l~~~-l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---D----IEILSILVVG-LPSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---h----HHHHHHHHhc-CcccchHHHHHHH
Confidence 3334444445566778888888888777653 1223333443333321 1 2222222222 12221 11 1123
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHH
Q 044044 184 IKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGL 263 (508)
Q Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 263 (508)
..++....+.+++.+-.......|.+.+...-+....+.....|++.|+.+|+++.+.++- --.|..+|..++-+-
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPY----Rl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPY----RLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC----cchhHHHHhHHHHHH
Confidence 3556666788888888888888887767776677777778899999999999999998642 223567787776443
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 044044 264 CKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKAS 343 (508)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 343 (508)
....+ +..+-+-...--+--+.|...+.+-|.-.++.++|...|+..++.+ +.....|+.+..-|....+...|.
T Consensus 310 ~~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 310 NDKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHH
Confidence 22211 1112111111012235678888888888999999999999999874 335568888888999999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 344 RLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKG 423 (508)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 423 (508)
+-++.+++-+ +.|-..|-.|.++|.-.+.+.-|.-.|++..+.. +.|...|.+|+.+|.+.++.++|++.|++....|
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9999999774 3478899999999999999999999999998875 6789999999999999999999999999999876
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccC
Q 044044 424 IKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN----HVAAD--TYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELN 497 (508)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 497 (508)
-. +...+..|...|-+.++.++|...|++-++. |...+ ...-.-|..-+.+.+++++|.......... .+.
T Consensus 463 dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e 539 (559)
T KOG1155|consen 463 DT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETE 539 (559)
T ss_pred cc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--Cch
Confidence 33 6678999999999999999999999877652 33322 122223555677888888887766555432 444
Q ss_pred HHHHHHH
Q 044044 498 IVSYNCL 504 (508)
Q Consensus 498 ~~~~~~l 504 (508)
..--+.|
T Consensus 540 ~eeak~L 546 (559)
T KOG1155|consen 540 CEEAKAL 546 (559)
T ss_pred HHHHHHH
Confidence 4333333
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.5e-14 Score=130.92 Aligned_cols=292 Identities=15% Similarity=0.071 Sum_probs=230.3
Q ss_pred CCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHH
Q 044044 191 SRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVD 270 (508)
Q Consensus 191 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 270 (508)
-+..+|+..|.++... +.-+..+...+..+|...+++++|.++|+.+....+- ...+...|.+.+..+-+ +
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~----rv~~meiyST~LWHLq~----~ 403 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY----RVKGMEIYSTTLWHLQD----E 403 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----cccchhHHHHHHHHHHh----h
Confidence 3567899999996554 2334567778999999999999999999999987642 23467788877765433 2
Q ss_pred HHHHHH-HHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 044044 271 KAKELF-LKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELM 349 (508)
Q Consensus 271 ~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 349 (508)
-++..+ +.+.+. -+-.+.+|..+.++|.-+++.+.|++.|++..+.+ +-...+|+.+..-+....++|.|...|+.+
T Consensus 404 v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 404 VALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 233333 223332 23367899999999999999999999999998863 226778888888888999999999999998
Q ss_pred HHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 044044 350 IWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVV 429 (508)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 429 (508)
+..... +-..|.-+.-.|.+.++++.|+-.|+++.+.+ +.+.+....++..+.+.|+.++|+.+++++.....+ |+.
T Consensus 482 l~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 482 LGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred hcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 854211 23455567788999999999999999999987 667788888899999999999999999999987655 555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccC
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELN 497 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 497 (508)
.-...+..+...+++++|+..++++++. ++.+...+-.+...|.+.|+.+.|+.-|--|.+..-+++
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 5566777888899999999999999986 455677888899999999999999999988886543333
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-16 Score=140.99 Aligned_cols=221 Identities=15% Similarity=0.105 Sum_probs=53.9
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHH
Q 044044 151 CFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIV 230 (508)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 230 (508)
.+...++.+.|.+.++++...+.. +...+..++.. ...+++++|.+++.+..+. .++...+..++..+.+.+++++
T Consensus 53 La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 53 LAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred cccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHH
Confidence 333344444444444444433211 22233333333 3344444444444333222 1233333334444444444444
Q ss_pred HHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 044044 231 ALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRL 310 (508)
Q Consensus 231 A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 310 (508)
+.++++.+..... .+.+...|..+...+.+.|+.++|.+.+++..+.. +.|....+.++..+...|+.+++.++
T Consensus 129 ~~~~l~~~~~~~~-----~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~ 202 (280)
T PF13429_consen 129 AEELLEKLEELPA-----APDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREA 202 (280)
T ss_dssp HHHHHHHHHH-T--------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 4444444332211 12333344444444444444444444444444431 11233344444444444444444444
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHH
Q 044044 311 FIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVS 383 (508)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 383 (508)
++...+.. +.|...+..+..++...|+.++|...++...+.. +.|......+..++...|+.++|.++.++
T Consensus 203 l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 203 LKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT--------------
T ss_pred HHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 44433331 2222333344444444444444444444444331 11344444444444444444444444433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.7e-13 Score=111.52 Aligned_cols=292 Identities=13% Similarity=0.105 Sum_probs=201.5
Q ss_pred CCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHH
Q 044044 191 SRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVD 270 (508)
Q Consensus 191 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 270 (508)
.+.++|.++|-+|.+.. +.+..+-.+|.+.|.+.|..+.|+.+.+.+.++.... ..--......|..-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT---~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLT---FEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHHHHHHhhhhh
Confidence 66778888888777642 3344556677888888888888888888877653200 0011223445667778888888
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----hHHHHHHHHHhcCChhHHHHHH
Q 044044 271 KAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV----TFSVIMDELCKNGKMDKASRLL 346 (508)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~ 346 (508)
.|+++|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+-.+..+ .|.-+...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 8888888887753 2245567788888888888999998888888765444322 4555666666678888899999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 044044 347 ELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKP 426 (508)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 426 (508)
.++.+.+.. .+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+.++.+....
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g- 281 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG- 281 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-
Confidence 888876422 344444566788888999999999999888764444556778888899999999999999888886333
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHc
Q 044044 427 TVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLC---KSGFVLEALELFRAIRDS 492 (508)
Q Consensus 427 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~ 492 (508)
...-..+...-....-.+.|..++.+-.+. .|+...+..+++.-. ..|...+-+.+++.|...
T Consensus 282 -~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 282 -ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred -ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 333344444444455566666665554443 588888888887643 345567777788888743
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7e-14 Score=129.71 Aligned_cols=292 Identities=13% Similarity=0.042 Sum_probs=214.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCCHHHHH
Q 044044 120 NKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCF--TPNAVTFTSLIKGLCAESRIMEAA 197 (508)
Q Consensus 120 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 197 (508)
.-+.++|+.+|+.+... +.-.......+..+|...+++++|..+|+.+.+... -.+..+|.+.+-.+-+ +-++
T Consensus 332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence 34567888888885554 344456667788888899999999999988876521 2355677766654422 2233
Q ss_pred HHHHH-hhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHH
Q 044044 198 ALFTK-HRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELF 276 (508)
Q Consensus 198 ~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 276 (508)
.++.+ +... -+-.+.+|.++.++|..+++.+.|++.|++....+ +....+|+.+..-+.....+|.|...|
T Consensus 407 s~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-------p~faYayTLlGhE~~~~ee~d~a~~~f 478 (638)
T KOG1126|consen 407 SYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-------PRFAYAYTLLGHESIATEEFDKAMKSF 478 (638)
T ss_pred HHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-------CccchhhhhcCChhhhhHHHHhHHHHH
Confidence 33333 2222 24467889999999999999999999999988865 336778888888888888999999999
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 044044 277 LKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNP 356 (508)
Q Consensus 277 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 356 (508)
+....... .+-..|-.+.-.|.+.++++.|+-.|+++.+.. +-+.+....+...+-+.|+.|+|+++++++...+..
T Consensus 479 r~Al~~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k- 555 (638)
T KOG1126|consen 479 RKALGVDP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK- 555 (638)
T ss_pred HhhhcCCc-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-
Confidence 88876421 123344456677889999999999999888764 446667777788888899999999999998876543
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 044044 357 NTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTV 428 (508)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 428 (508)
|+..--..+..+...+++++|...++++.+. ++.+...+-.++..|.+.|+.+.|+.-|.-+.+..++++.
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 4444445566677788999999999998876 3556667788888999999999999988888887555444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.3e-12 Score=111.76 Aligned_cols=366 Identities=15% Similarity=0.084 Sum_probs=262.7
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhH-HHHHHHHHhcCCcch
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD-IYTH-SILINCFCKMGRVSH 160 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~-~~l~~~~~~~g~~~~ 160 (508)
..|....|++.|-..+...|. +-.+|..|..... + +++...... |.+.| ...- -.+..++....+.++
T Consensus 176 ~~~~~s~A~~sfv~~v~~~P~--~W~AWleL~~lit---~----~e~~~~l~~-~l~~~~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVNRYPW--FWSAWLELSELIT---D----IEILSILVV-GLPSDMHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred hhchHHHHHHHHHHHHhcCCc--chHHHHHHHHhhc---h----HHHHHHHHh-cCcccchHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888777666 5455555444332 2 222222222 11222 1111 234467777778899
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC--CCHhhHHHHHHHHHhcCChHHHHHHHH-H
Q 044044 161 GFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACE--PDVFTYNTLINGLCRTGHTIVALNLFE-E 237 (508)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~-~ 237 (508)
+.+-.+.....|++.+...-+....+.....++++|+.+|+++.+...- .|..+|..++-.--... .+.++. .
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s----kLs~LA~~ 321 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS----KLSYLAQN 321 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH----HHHHHHHH
Confidence 9999999988888877777777777778889999999999999886311 14566766654332211 122222 2
Q ss_pred HHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 238 MANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
....+ +--+.|+..+.+-|.-.++.++|...|++..+.+.. ....|+.+..-|....+...|++-|+..++.
T Consensus 322 v~~id-------KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 322 VSNID-------KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHhc-------cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 22222 223567778888899999999999999999986432 5678889999999999999999999999987
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044044 318 GVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYN 397 (508)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (508)
. +-|-..|-.+.++|.-.+.+.=|+-.|+++.+.. +.|...|.+|.++|.+.++.++|++.|......| ..+...+.
T Consensus 394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~ 470 (559)
T KOG1155|consen 394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALV 470 (559)
T ss_pred C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHH
Confidence 4 6688899999999999999999999999998764 4479999999999999999999999999999887 44668899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC-C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044044 398 TLINWYCKNKDVEEALSLYSEMLSK----GIK-P-TVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFID 471 (508)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 471 (508)
.+...|-+.++.++|...|++.++. |.. | .......|..-+.+.+++++|..+.......
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-------------- 536 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-------------- 536 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--------------
Confidence 9999999999999999999887763 322 2 1222333556667777777776655444332
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 044044 472 GLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 472 ~~~~~g~~~~A~~~~~~m~~ 491 (508)
.-..++|..++++++.
T Consensus 537 ----~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 537 ----ETECEEAKALLREIRK 552 (559)
T ss_pred ----CchHHHHHHHHHHHHH
Confidence 2234667777777664
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-12 Score=110.51 Aligned_cols=291 Identities=11% Similarity=0.051 Sum_probs=211.2
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCH
Q 044044 190 ESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFV 269 (508)
Q Consensus 190 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 269 (508)
.|++..|+++..+..+.+ +.....|..-+.+.-+.|+.+.+-.++.+..+.. -.++...+-.........|++
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~------~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA------GDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHhCCCc
Confidence 488888888888877765 3345556666777778888888888888887753 245566677777788888888
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------hHHHHHHHHHhcCChhHH
Q 044044 270 DKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV-------TFSVIMDELCKNGKMDKA 342 (508)
Q Consensus 270 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a 342 (508)
+.|..-.+++.+.+. .++.......++|.+.|+|.+...++..+.+.|.-.+.. +|..++.-....+..+.-
T Consensus 170 ~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL 248 (400)
T COG3071 170 PAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL 248 (400)
T ss_pred hhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 888888888877643 356677788888888888888888888888877654442 555555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 343 SRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
...++....+ ...++..-.+++.-+.++|+.++|.++..+..+++..+.. ...-.+.+-++.+.-++..++-...
T Consensus 249 ~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 249 KTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHh
Confidence 5566655443 3445666777788888889999999888888887644441 1223355677777777777766655
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcc
Q 044044 423 GIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYEL 496 (508)
Q Consensus 423 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 496 (508)
. +-++..+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+.++|.+.+++....-.+|
T Consensus 324 h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 324 H-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred C-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 2 22457788888888899999999999987776 46788888889999999999999888888876433333
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.4e-12 Score=109.96 Aligned_cols=288 Identities=10% Similarity=0.035 Sum_probs=206.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 044044 119 KNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAA 198 (508)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 198 (508)
-.|+|.+|.++..+..+.+ ......|..-.++.-+.|+.+.+-.++.++.+....++....-+..+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3699999999999988776 334556666778888999999999999999887556677778888888999999999999
Q ss_pred HHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCH-------hHHHHHHHHHHccCCHHH
Q 044044 199 LFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT-------VTYNTIIDGLCKEGFVDK 271 (508)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~ 271 (508)
-++++.+.+ +.+..+......+|.+.|++.....++..+.+.+ .-.+. .+|..+++-....+..+.
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~------~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG------LLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc------CCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 999988876 5578888999999999999999999999999887 22222 355666666555555566
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044044 272 AKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIW 351 (508)
Q Consensus 272 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 351 (508)
-...++...++ ...++..-..++.-+.+.|+.++|.++.++..+.+..|+.. ..-.+.+-++...-.+..+.-.+
T Consensus 248 L~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 248 LKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHH
Confidence 55666666544 33345555666667777777777777777777765544411 12234555666666666665555
Q ss_pred cCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 352 RGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
.. +.++..+.+|...|.+.+.|.+|.+.|+...+. .|+..+|+.+..++.+.|+.++|.++.++....
T Consensus 323 ~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 323 QH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 42 224566677777777777777777777766665 467777777777777777777777777666543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-11 Score=113.19 Aligned_cols=384 Identities=13% Similarity=0.041 Sum_probs=258.0
Q ss_pred HhhccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHhHHHHHHH
Q 044044 73 RCKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSA-GLFPDIYTHSILINC 151 (508)
Q Consensus 73 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~ 151 (508)
.|.-.|..+....+.+.|...|.+++..+.. ..+.+..++....-. .++-..+++.+.-. -...+......+...
T Consensus 143 ic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~--c~Ea~~~lvs~~mlt--~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel 218 (611)
T KOG1173|consen 143 ICYLRGKVYVALDNREEARDKYKEALLADAK--CFEAFEKLVSAHMLT--AQEEFELLESLDLAMLTKEDVERLEILYEL 218 (611)
T ss_pred eeeeeeehhhhhccHHHHHHHHHHHHhcchh--hHHHHHHHHHHHhcc--hhHHHHHHhcccHHhhhhhHHHHHHHHHHh
Confidence 3555566777778889999999998887665 555555555543221 12223333321100 012233333333332
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHH
Q 044044 152 FCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVA 231 (508)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 231 (508)
..-...-+.....-++..-.+...+......-..-+...+++.+..++++...+.. +++...+..-|.++...|+..+-
T Consensus 219 ~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~L 297 (611)
T KOG1173|consen 219 KLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKL 297 (611)
T ss_pred hhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchH
Confidence 21111111111111111112334566666677777788899999999999888764 56677777777788888988888
Q ss_pred HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 044044 232 LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLF 311 (508)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 311 (508)
..+=.++.... |....+|.++.--|...|++.+|.+.|.+....+.. =...|......|.-.|.-++|...|
T Consensus 298 f~lsh~LV~~y-------P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY 369 (611)
T KOG1173|consen 298 FLLSHKLVDLY-------PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAY 369 (611)
T ss_pred HHHHHHHHHhC-------CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHH
Confidence 88888888874 566788999988888889999999999887654222 2457888888888889999999888
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC----
Q 044044 312 IEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESN---- 387 (508)
Q Consensus 312 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 387 (508)
...-+. ++-..--+-.+.--|.+.++.+.|.+.|.++.... +.|+..++.+.-.....+.+.+|..+|+.....
T Consensus 370 ~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~ 447 (611)
T KOG1173|consen 370 FTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV 447 (611)
T ss_pred HHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc
Confidence 777654 11112222234445778889999999998888552 446778888887777888899999988877632
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044044 388 G--CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYT 465 (508)
Q Consensus 388 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 465 (508)
+ ...-..+++.|+.+|.+.+.+++|+..+++.+....+ +..++.++.-.|...|+++.|++.|.+..- +.||-.+
T Consensus 448 ~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~ 524 (611)
T KOG1173|consen 448 LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIF 524 (611)
T ss_pred cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHH
Confidence 0 0112345788888999999999999999998887443 788888998899999999999999988875 4677666
Q ss_pred HHHHHHHHH
Q 044044 466 YNNFIDGLC 474 (508)
Q Consensus 466 ~~~li~~~~ 474 (508)
-..++..+.
T Consensus 525 ~~~lL~~ai 533 (611)
T KOG1173|consen 525 ISELLKLAI 533 (611)
T ss_pred HHHHHHHHH
Confidence 666655443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-11 Score=111.02 Aligned_cols=285 Identities=15% Similarity=0.051 Sum_probs=230.8
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 044044 208 CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPD 287 (508)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 287 (508)
...+......-..-+...+++.+..++++...+.+ ++....+..-|..+...|+..+-..+=.++.+. .+..
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-------pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~ 311 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-------PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSK 311 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-------CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCC
Confidence 34566667777788889999999999999999986 566777777777899999988888777888776 4557
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 044044 288 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDG 367 (508)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (508)
+.+|-.+.--|...|+..+|.+.|.+....+-. =...|..+...++-.|..|+|...+..+.+.= +-...-+-.+.--
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgme 389 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGME 389 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHH
Confidence 889999998899999999999999987765311 23478888889999999999999998877641 1111223334456
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC----CCHhHHHHHHHHHHhc
Q 044044 368 YCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK--GIK----PTVVTYNTLFLGLFEI 441 (508)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----p~~~~~~~l~~~~~~~ 441 (508)
|.+.++.+.|.+.|.+..... |.|+...+.+.-.....+.+.+|..+|+..+.. .+. --..+++.|..+|.+.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 788999999999999988764 778889999998888999999999999988742 111 1345689999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHHHHHHHHc
Q 044044 442 HQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLID 506 (508)
Q Consensus 442 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 506 (508)
+++++|+..+++.... .+-+..++.++.-.|...|+++.|.+.|++.+ .+.|+..+-..+++
T Consensus 469 ~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred hhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence 9999999999999987 34588999999999999999999999999998 67899988777764
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-12 Score=126.48 Aligned_cols=252 Identities=12% Similarity=0.040 Sum_probs=173.1
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh---------cCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 044044 121 KHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCK---------MGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAES 191 (508)
Q Consensus 121 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (508)
+++++|+.+|++..+.. +.+...|..+..++.. .+++++|...++++++.. +.+...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 45788999999988763 3344556555554432 234788999999988874 446778888888888899
Q ss_pred CHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHH
Q 044044 192 RIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDK 271 (508)
Q Consensus 192 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 271 (508)
++++|+..|++....+ +.+...+..+...+...|++++|+..+++..+.++ .+...+..++..+...|++++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P-------~~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP-------TRAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-------CChhhHHHHHHHHHhccCHHH
Confidence 9999999999988875 44567788888899999999999999999988652 233333444555667889999
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044044 272 AKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIW 351 (508)
Q Consensus 272 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 351 (508)
|...++++.+...+.+...+..+..++...|++++|...++++.... +.+....+.+...|...| +++...++.+.+
T Consensus 425 A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 425 AIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 99999888765322245556777788888999999999998876541 223334555555667766 477777766655
Q ss_pred cC-CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044044 352 RG-VNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNG 388 (508)
Q Consensus 352 ~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (508)
.. ..+....+ +-..|.-.|+.+.+..+ +++.+.+
T Consensus 502 ~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 502 SEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 32 11121222 33344556676666655 7776653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.9e-10 Score=102.58 Aligned_cols=411 Identities=14% Similarity=0.138 Sum_probs=226.8
Q ss_pred CCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 044044 78 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGR 157 (508)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 157 (508)
.+...++|+...-+..|+.++..-|.......|...+......|-++-++.+|++.++. .| ..-.-.+..+++.++
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHHHHhccc
Confidence 34445678888899999999988876567789999999888999999999999999864 33 346777888889999
Q ss_pred cchHHHHHHHHHhCC------CCCCHHhHHHHHHHHHhcCCHH---HHHHHHHHhhhcCCCCC--HhhHHHHHHHHHhcC
Q 044044 158 VSHGFVVLGRILRSC------FTPNAVTFTSLIKGLCAESRIM---EAAALFTKHRVFACEPD--VFTYNTLINGLCRTG 226 (508)
Q Consensus 158 ~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 226 (508)
+++|.+.+..++... .+.+...|..+-...++..+.- ....+++.+... -+| ...|+.|.+-|.+.|
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhh
Confidence 999998888776431 1334445555555555443322 222333333322 233 235777777777777
Q ss_pred ChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHH------------------------------------------
Q 044044 227 HTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLC------------------------------------------ 264 (508)
Q Consensus 227 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------------------------ 264 (508)
.+++|.++|++....- .++..|..+.+.|+
T Consensus 263 ~~ekarDvyeeai~~v--------~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQTV--------MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred hhHHHHHHHHHHHHhh--------eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 7777777777665432 11222222222221
Q ss_pred ------------------------ccCCHHHHHHHHHHHhhCCCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 265 ------------------------KEGFVDKAKELFLKMKDENINP------DVVTYTSVIRGFCYANDWNEAKRLFIEM 314 (508)
Q Consensus 265 ------------------------~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 314 (508)
..|+..+....|.++.+. +.| -...|..+...|-..|+.+.|..+|++.
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 123333333333333322 111 1123444555555556666666666555
Q ss_pred HHcCCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHHHcC-----------CCC------CHHhHHHHHHHHHcCCCH
Q 044044 315 MDQGVQPD---VVTFSVIMDELCKNGKMDKASRLLELMIWRG-----------VNP------NTYTYNTLIDGYCLTDKI 374 (508)
Q Consensus 315 ~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~l~~~~~~~g~~ 374 (508)
.+...+-- ..+|......-.+..+++.|+++++.+...- .++ +...|...++..-..|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 54322211 2244444444445555555555555443210 000 112233333433445555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHh---cCCHHHHHHH
Q 044044 375 DHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVV-TYNTLFLGLFE---IHQVERALKL 450 (508)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~---~g~~~~a~~~ 450 (508)
+....+++++.+..+. .+.........+..+.-++++.++|++-+..-..|+.. .|+..+.-+.+ ..+.+.|..+
T Consensus 494 estk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 6666666666555422 22222222233344555666666666655543334433 45554444432 3468889999
Q ss_pred HHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCH--HHHHHHHc
Q 044044 451 FDEMRRNHVAADTYT--YNNFIDGLCKSGFVLEALELFRAIRDSKYELNI--VSYNCLID 506 (508)
Q Consensus 451 ~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~ 506 (508)
|++..+ |.+|...- |......-.+.|....|+.++++... ++++.. .+|+..|+
T Consensus 573 FEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 573 FEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 999988 56655432 22222333456888888888888654 344432 45666553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-09 Score=100.75 Aligned_cols=388 Identities=14% Similarity=0.108 Sum_probs=254.2
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHH
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFV 163 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 163 (508)
.+++...+++.+.+++..|. ..++....+-.+...|+-++|.+..+...... .-+.++|..+.-.+....++++|++
T Consensus 20 ~kQYkkgLK~~~~iL~k~~e--HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPE--HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCc--cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 35788889999999988877 66666666667778899999999988887754 4577888888888888889999999
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044044 164 VLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 243 (508)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 243 (508)
.|..++..+ +.|...|.-+.-.-++.++++.......+..+.. +.....|..++.++.-.|++..|..++++......
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999988875 4577778777777777888888777777766652 33456688888888889999999999988887642
Q ss_pred CCCccccCCHhHHHHHH------HHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 244 EFGVVCKPNTVTYNTII------DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 244 ~~~~~~~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
..|+...+.... ....+.|..++|.+.+..-... +......-.+-...+.+.+++++|..++..++..
T Consensus 175 -----~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 175 -----TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred -----cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 235555554332 3445677788888777665443 1112222334455677888999999999988886
Q ss_pred CCCCCHHhHHHHHH-HHHhcCChhHHH-HHHHHHHH----------------------------------cCCCCCHHhH
Q 044044 318 GVQPDVVTFSVIMD-ELCKNGKMDKAS-RLLELMIW----------------------------------RGVNPNTYTY 361 (508)
Q Consensus 318 ~~~~~~~~~~~l~~-~~~~~~~~~~a~-~~~~~~~~----------------------------------~~~~~~~~~~ 361 (508)
.||..-|...+. ++.+-.+.-++. .+|....+ .|+++ ++
T Consensus 249 --nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf 323 (700)
T KOG1156|consen 249 --NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VF 323 (700)
T ss_pred --CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hh
Confidence 456655554444 332222322333 44444332 22221 11
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHH--------hCC----------CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 362 NTLIDGYCLTDKIDHARKLFVSME--------SNG----------CMHDVVSYN--TLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~--------~~~----------~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
..+...|-. ..++- +++++. ..| -+|....|+ .++..+-..|+++.|..+++..+.
T Consensus 324 ~dl~SLyk~---p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 324 KDLRSLYKD---PEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred hhhHHHHhc---hhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 122221111 11111 222221 110 144554444 456677788888999888888887
Q ss_pred CCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044044 422 KGIKPT-VVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKY 494 (508)
Q Consensus 422 ~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 494 (508)
+ .|+ +..|..-.+.+...|++++|..++++..+.+ .+|...-..-.....++++.++|.++.-..-+.|.
T Consensus 400 H--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 400 H--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred c--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 5 344 3355555678888889999988888888764 33554444566667788888888888877776664
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-11 Score=119.33 Aligned_cols=251 Identities=15% Similarity=0.050 Sum_probs=153.3
Q ss_pred CCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHH
Q 044044 191 SRIMEAAALFTKHRVFACEPDVFTYNTLINGLCR---------TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIID 261 (508)
Q Consensus 191 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 261 (508)
+.+++|+..|++..... +.+...|..+..++.. .+++++|...+++..+.+ +.+...+..+..
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-------P~~~~a~~~lg~ 346 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-------HNNPQALGLLGL 346 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-------CCCHHHHHHHHH
Confidence 34678888888887763 2245556555554432 234678888888887765 445667777777
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhH
Q 044044 262 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDK 341 (508)
Q Consensus 262 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 341 (508)
.+...|++++|...|+++.+.+ +.+...+..+...+...|++++|+..+++..+... .+...+..++..+...|++++
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P-~~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP-TRAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHhccCHHH
Confidence 7778888888888888877763 22455667777777788888888888888777531 122233333444556777777
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 342 ASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
|...++++.+...+.+...+..+..++...|+.++|...+.++.... +.+....+.+...|...| ++|...++.+.+
T Consensus 425 A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 425 AIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 87777777655322234456666677777788888887777765542 223344455555566666 366666666554
Q ss_pred C-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 422 K-GIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 422 ~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
. ...+....+ +...+.-.|+.+.+..+ +++.+.
T Consensus 502 ~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 502 SEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 3 111222222 33334445555555555 666554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.1e-11 Score=101.62 Aligned_cols=396 Identities=13% Similarity=0.108 Sum_probs=202.1
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHH
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVV 164 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 164 (508)
.++..|+.+++.....+.. -...+-..+..++.+.|++++|+..|..+.+.. .++...+..|.-+..-.|.+.+|..+
T Consensus 36 rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred ccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHH
Confidence 3556666666555433322 111122234445556666666666666655433 44444454454444445555555544
Q ss_pred HHHHHhC--------------C-----------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHH-H
Q 044044 165 LGRILRS--------------C-----------FTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNT-L 218 (508)
Q Consensus 165 ~~~~~~~--------------~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l 218 (508)
-.+..+. + ......---+|.......-.+++|+++|.+.... .|+-...|. +
T Consensus 114 ~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ 191 (557)
T KOG3785|consen 114 AEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYM 191 (557)
T ss_pred HhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHH
Confidence 4332110 0 0001111222333333334566777777776654 334334443 3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHcc--CCHHHHH--H----------HHHHHhhCC-
Q 044044 219 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKE--GFVDKAK--E----------LFLKMKDEN- 283 (508)
Q Consensus 219 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~--~----------~~~~~~~~~- 283 (508)
.-+|.+..-++.+.++++-....- +.+....|..+....+. |+..+.+ + ..+.+.+++
T Consensus 192 ALCyyKlDYydvsqevl~vYL~q~-------pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNL 264 (557)
T KOG3785|consen 192 ALCYYKLDYYDVSQEVLKVYLRQF-------PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNL 264 (557)
T ss_pred HHHHHhcchhhhHHHHHHHHHHhC-------CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCe
Confidence 334556666666777666666542 22333333333322221 2111110 0 111111110
Q ss_pred -----------CCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-------hh
Q 044044 284 -----------INP-----DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGK-------MD 340 (508)
Q Consensus 284 -----------~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~ 340 (508)
+-| -+.....|+--|.+.+++.+|..+.+++.- ..|-......+ .....|+ ..
T Consensus 265 VvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgv--v~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 265 VVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGV--VFAALGQETGSREHLK 340 (557)
T ss_pred EEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHH--HHHHhhhhcCcHHHHH
Confidence 000 122233444456677777777777655421 12222222211 2223332 33
Q ss_pred HHHHHHHHHHHcCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 341 KASRLLELMIWRGVNPN-TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEM 419 (508)
Q Consensus 341 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (508)
-|.+.|...-+++..-| ..--.++...+.-..++++....++.+..--...|...+ .+..+++..|++.+|+++|-++
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhh
Confidence 44555544433333222 222333444444556778888888777765333344444 4678889999999999999777
Q ss_pred HHCCCCCCHhHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCccC
Q 044044 420 LSKGIKPTVVTY-NTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYN-NFIDGLCKSGFVLEALELFRAIRDSKYELN 497 (508)
Q Consensus 420 ~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 497 (508)
....++ |..+| ..|.++|.+.++++.|++++-++. -+.+..... .+..-|.+++.+--|-+.|..+.. ..|+
T Consensus 420 s~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~ 493 (557)
T KOG3785|consen 420 SGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPT 493 (557)
T ss_pred cChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCC
Confidence 665555 44555 567788899999999988765543 233444433 444568889998888888888874 4676
Q ss_pred HHHHH
Q 044044 498 IVSYN 502 (508)
Q Consensus 498 ~~~~~ 502 (508)
.+.|.
T Consensus 494 pEnWe 498 (557)
T KOG3785|consen 494 PENWE 498 (557)
T ss_pred ccccC
Confidence 66654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.6e-12 Score=107.11 Aligned_cols=230 Identities=14% Similarity=0.037 Sum_probs=178.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHH
Q 044044 181 TSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTII 260 (508)
Q Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (508)
+.+.++|.+.|.+.+|.+.|+...+. .|-+.||..|-+.|.+..++..|+.++.+-.+. .+-|+....-+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-------fP~~VT~l~g~A 297 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-------FPFDVTYLLGQA 297 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-------CCchhhhhhhhH
Confidence 56778888888888888888877765 667778888888888888888888888887775 344555555677
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChh
Q 044044 261 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMD 340 (508)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 340 (508)
+.+-..++.++|.++|....+.. +.++.....+...|.-.++++.|+..|+.+++.|+. +...|+.+.-+|.-.+++|
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 77888888888888888887752 335666666677777888888888888888888854 6777888888888888888
Q ss_pred HHHHHHHHHHHcCCCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 341 KASRLLELMIWRGVNPN--TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSE 418 (508)
Q Consensus 341 ~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 418 (508)
-++.-|.++...-..|+ ..+|..+.......|++..|.+.|+-...++ ..+...+|.|...-.+.|++++|..++..
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 88888888776544444 4567777777778888888888888887765 45667788888888888888888888887
Q ss_pred HHHC
Q 044044 419 MLSK 422 (508)
Q Consensus 419 ~~~~ 422 (508)
....
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 7664
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-09 Score=97.94 Aligned_cols=392 Identities=15% Similarity=0.122 Sum_probs=260.7
Q ss_pred ccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 044044 76 SSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKM 155 (508)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (508)
-.|..+...|+-++|.......++.++. +...|+.++-.+...+++++|++.|+.+...+ +.|...|..+.-.-++.
T Consensus 46 mkGL~L~~lg~~~ea~~~vr~glr~d~~--S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~Qm 122 (700)
T KOG1156|consen 46 MKGLTLNCLGKKEEAYELVRLGLRNDLK--SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQM 122 (700)
T ss_pred hccchhhcccchHHHHHHHHHHhccCcc--cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHH
Confidence 3466677889999999999999887776 88999999999999999999999999998865 55677777777667777
Q ss_pred CCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcC-CCCCHhhHHHHH------HHHHhcCCh
Q 044044 156 GRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFA-CEPDVFTYNTLI------NGLCRTGHT 228 (508)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~g~~ 228 (508)
++++-....-...++.. +.....|..++.++.-.|+...|..+++...+.. ..|+...+.... ....+.|..
T Consensus 123 Rd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~ 201 (700)
T KOG1156|consen 123 RDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSL 201 (700)
T ss_pred HhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccH
Confidence 88887777766666542 2345567778888888899999999988877654 235555444332 334567778
Q ss_pred HHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHH-HHHHhcCCHHHH
Q 044044 229 IVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVI-RGFCYANDWNEA 307 (508)
Q Consensus 229 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a 307 (508)
++|++.+...... +......-..-...+.+.+++++|..+|..+... .||...|.-.+ .++.+-.+.-++
T Consensus 202 q~ale~L~~~e~~-------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~ 272 (700)
T KOG1156|consen 202 QKALEHLLDNEKQ-------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEA 272 (700)
T ss_pred HHHHHHHHhhhhH-------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHH
Confidence 8888877765543 1222333345567778888999999999888876 45555544433 333222222222
Q ss_pred H-HHHHHH----------------------------------HHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH-
Q 044044 308 K-RLFIEM----------------------------------MDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIW- 351 (508)
Q Consensus 308 ~-~~~~~~----------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 351 (508)
. .+|... .+.|+++ ++..+...|-.....+ ++++.+.
T Consensus 273 lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~Lvt~ 345 (700)
T KOG1156|consen 273 LKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEKLVTS 345 (700)
T ss_pred HHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHHHHHHH
Confidence 2 333332 3333322 2222222222211111 2222211
Q ss_pred -------cC----------CCCCHH--hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 044044 352 -------RG----------VNPNTY--TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHD-VVSYNTLINWYCKNKDVEE 411 (508)
Q Consensus 352 -------~~----------~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 411 (508)
.| -+|... ++-.+++.|-+.|+++.|..+++..+.+ .|+ +..|..-.+.+...|++++
T Consensus 346 y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~e 423 (700)
T KOG1156|consen 346 YQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDE 423 (700)
T ss_pred HHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHH
Confidence 11 134443 4455678899999999999999999987 454 4566677789999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHHH--HHHHHHhcCCHHHHH
Q 044044 412 ALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVA--AD----TYTYNN--FIDGLCKSGFVLEAL 483 (508)
Q Consensus 412 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~--li~~~~~~g~~~~A~ 483 (508)
|..++++..+.. .+|...-..-+.-..+.++.++|.++.....+.|.. .+ .-.|-. -..+|.+.|++-.|+
T Consensus 424 Aa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~AL 502 (700)
T KOG1156|consen 424 AAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLAL 502 (700)
T ss_pred HHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHH
Confidence 999999999874 345554445666677899999999999988877641 11 112222 234678888888887
Q ss_pred HHHHHHH
Q 044044 484 ELFRAIR 490 (508)
Q Consensus 484 ~~~~~m~ 490 (508)
+-|..+.
T Consensus 503 Kkfh~i~ 509 (700)
T KOG1156|consen 503 KKFHEIE 509 (700)
T ss_pred HHHhhHH
Confidence 7666554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.5e-11 Score=103.28 Aligned_cols=200 Identities=13% Similarity=0.033 Sum_probs=133.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 044044 288 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDG 367 (508)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (508)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++...+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 3445556666666677777777766666542 33445566666667777777777777776665532 244556666667
Q ss_pred HHcCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 044044 368 YCLTDKIDHARKLFVSMESNGC-MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVER 446 (508)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 446 (508)
+...|++++|.+.++++.+... +.....+..+...+...|++++|...+.+..+.... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777665421 223445666677777888888888888877775322 45567777777888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 447 ALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 447 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
|...+++..+. .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888877765 344556666677777788888888887777654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9e-10 Score=99.01 Aligned_cols=366 Identities=13% Similarity=0.034 Sum_probs=235.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC-HHhHHHHHHHH
Q 044044 110 FNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD-IYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPN-AVTFTSLIKGL 187 (508)
Q Consensus 110 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 187 (508)
+.....-+.++|++++|++.|...++. .|| +.-|.....+|...|++++..+...+.++.+ |+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 344556678899999999999999985 677 6677888888999999999998888887653 32 33455555667
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHH---
Q 044044 188 CAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLC--- 264 (508)
Q Consensus 188 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 264 (508)
-..|++.+|+.-..-.--.+.-.|..+--.+=+.+-+ .|.+-.++-...++ ..+-|...........+.
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr---~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEKLKENR---PPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHhhcccC---CCCCCcHHHHHHHHhhccccc
Confidence 7778888776533322211111122111111111111 12222222222110 002333333222222211
Q ss_pred --------------------c--cC---CHHHHHHHHHHHhhC---CCCCC---------hhhHHHHHHHHHhcCCHHHH
Q 044044 265 --------------------K--EG---FVDKAKELFLKMKDE---NINPD---------VVTYTSVIRGFCYANDWNEA 307 (508)
Q Consensus 265 --------------------~--~g---~~~~a~~~~~~~~~~---~~~~~---------~~~~~~l~~~~~~~g~~~~a 307 (508)
. .+ .+..|...+.+-... ....+ ..+...-...+.-.|+...|
T Consensus 266 ~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 266 KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 0 11 233333333222111 01111 11122222233446888899
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044044 308 KRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESN 387 (508)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (508)
.+-|+..+.....+ ...|..+..+|....+.++....|..+.+.+.. ++.+|..-.+++.-.+++++|..-|++.++.
T Consensus 346 ~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 346 QEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999998875333 333777888899999999999999999987543 6778888888888899999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCC
Q 044044 388 GCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHV-----AAD 462 (508)
Q Consensus 388 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~ 462 (508)
+ +-+...|-.+..+..+.+.+++++..|++..++ ++..+..|+.....+..+++++.|.+.|+..++... ..+
T Consensus 424 ~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 424 D-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred C-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence 6 556777888888888999999999999999987 455678899999999999999999999999986421 112
Q ss_pred HH--HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 463 TY--TYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 463 ~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
.. +-..++. +.-.+++..|.+++++.++.
T Consensus 502 ~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 502 AAPLVHKALLV-LQWKEDINQAENLLRKAIEL 532 (606)
T ss_pred chhhhhhhHhh-hchhhhHHHHHHHHHHHHcc
Confidence 22 2222222 22348999999999999854
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.8e-11 Score=102.90 Aligned_cols=203 Identities=13% Similarity=0.074 Sum_probs=170.6
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 044044 251 PNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIM 330 (508)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 330 (508)
.....+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 345678888999999999999999999998763 3356788888999999999999999999998864 44566788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCC-CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 044044 331 DELCKNGKMDKASRLLELMIWRGVN-PNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDV 409 (508)
Q Consensus 331 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (508)
..+...|++++|...++.+...... .....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 8999999999999999999875322 235567778889999999999999999998874 44677888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 410 EEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 410 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
++|...+++..+. .+.+...+..++..+...|+.++|..+.+.+.+.
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999887 3446677778888899999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-09 Score=98.67 Aligned_cols=398 Identities=13% Similarity=0.089 Sum_probs=222.3
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
..|++++|.+..++++...|. +..++..-+-++.+.++|++|+.+.+.-... ..+..-+.--..+..+.+..++|+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHH
Confidence 567999999999999999877 7888888899999999999999666553211 111111112223344789999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHh--hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVF--TYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
..++-.. +.+..+...-...+.+.|++++|+.+|+.+.+.+.+ +.. .-..++.+- ---.+. +.+....
T Consensus 100 k~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~~----a~l~~~-~~q~v~~ 169 (652)
T KOG2376|consen 100 KTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAVA----AALQVQ-LLQSVPE 169 (652)
T ss_pred HHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH----HhhhHH-HHHhccC
Confidence 9888322 223446666677888999999999999999766422 221 111121111 111111 1222211
Q ss_pred CCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC-------C-CC-CC-----hhhHHHHHHHHHhcCCHHH
Q 044044 241 GNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE-------N-IN-PD-----VVTYTSVIRGFCYANDWNE 306 (508)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~-~~-~~-----~~~~~~l~~~~~~~g~~~~ 306 (508)
. ...+-..+....-.+...|+|.+|+++++...+. + .. -+ ...-..+...+-..|+.++
T Consensus 170 v-------~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 170 V-------PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred C-------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 1 0111222333445566788999999998887321 1 00 00 0112334556667899999
Q ss_pred HHHHHHHHHHcCCCCCHHhH----HHHHHHHHhcCChhH--HHHHHH------------HH-------------------
Q 044044 307 AKRLFIEMMDQGVQPDVVTF----SVIMDELCKNGKMDK--ASRLLE------------LM------------------- 349 (508)
Q Consensus 307 a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~--a~~~~~------------~~------------------- 349 (508)
|..+|...++.. .+|.... |.++. .....++-. ++..++ .+
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988888764 3333211 11111 111100000 000000 00
Q ss_pred ---------HHc--CCCCCHHhHHHHHHHHH--cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044044 350 ---------IWR--GVNPNTYTYNTLIDGYC--LTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLY 416 (508)
Q Consensus 350 ---------~~~--~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (508)
... +..|. ..+..++.... +...+.++.+++...-+........+.-.++......|+++.|++++
T Consensus 321 nk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 000 11222 22333332222 22246667777776665542233455556677778889999999988
Q ss_pred H--------HHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHH
Q 044044 417 S--------EMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN------HVAADTYTYNNFIDGLCKSGFVLEA 482 (508)
Q Consensus 417 ~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A 482 (508)
. .+.+.+..|. +...+...+.+.++.+.|..++.+..+. +-.--..++..++..-.+.|+.++|
T Consensus 400 ~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 8 4555444443 4455666677777766666666655431 1111122333344444567888999
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHcc
Q 044044 483 LELFRAIRDSKYELNIVSYNCLIDG 507 (508)
Q Consensus 483 ~~~~~~m~~~g~~p~~~~~~~ll~~ 507 (508)
..+++++.+.. .+|..+...++.+
T Consensus 478 ~s~leel~k~n-~~d~~~l~~lV~a 501 (652)
T KOG2376|consen 478 SSLLEELVKFN-PNDTDLLVQLVTA 501 (652)
T ss_pred HHHHHHHHHhC-CchHHHHHHHHHH
Confidence 99999988643 5566666666654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.4e-10 Score=105.19 Aligned_cols=127 Identities=17% Similarity=0.055 Sum_probs=70.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 044044 362 NTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI 441 (508)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 441 (508)
..+.+.|...|++++|.+++++.+++. |..+..|..-...+-+.|++++|.+.++........ |...-+..+..+.+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHC
Confidence 444555556666666666666666653 223555666666666666666666666666655433 444445555556666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 442 HQVERALKLFDEMRRNHVAADTY--------TYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 442 g~~~~a~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
|++++|.+++....+.+..|... .......+|.+.|++..|++.|..+.
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666555544322111 11334455666666666665555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-09 Score=103.15 Aligned_cols=290 Identities=13% Similarity=0.092 Sum_probs=157.6
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHh-----
Q 044044 150 NCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCR----- 224 (508)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----- 224 (508)
..+...|++++|++.++.-... +.............+.+.|+.++|..+|..+...+ +.|..-|..+..+...
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 3344555555555555443322 22223344445555566666666666666666553 2223333333333311
Q ss_pred cCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHH-HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 044044 225 TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVD-KAKELFLKMKDENINPDVVTYTSVIRGFCYAND 303 (508)
Q Consensus 225 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 303 (508)
..+.+....+|+++.... |.......+.-.+.....+. .+..++..+..+|++ .+|+.|-..|....+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--------p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--------PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEK 158 (517)
T ss_pred cccHHHHHHHHHHHHHhC--------ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhH
Confidence 124555666666665543 22222222211112212222 334444555666643 245555555555555
Q ss_pred HHHHHHHHHHHHHc----C----------CCCCH--HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHhHHHHHH
Q 044044 304 WNEAKRLFIEMMDQ----G----------VQPDV--VTFSVIMDELCKNGKMDKASRLLELMIWRGVNPN-TYTYNTLID 366 (508)
Q Consensus 304 ~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 366 (508)
.+-..+++...... + -+|.. .++..+...|...|++++|+...+..++. .|+ +..|..-.+
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar 236 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 55555555554322 0 12333 23455566677778888888888777766 334 566777777
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH--------HHHHHHHH
Q 044044 367 GYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVT--------YNTLFLGL 438 (508)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--------~~~l~~~~ 438 (508)
.+-+.|++++|.+.++.....+ .-|...-+-.+..+.+.|++++|.+++......+..|.... ......+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 7777888888888777777765 44566666666777777888888877777766553332211 13345677
Q ss_pred HhcCCHHHHHHHHHHHH
Q 044044 439 FEIHQVERALKLFDEMR 455 (508)
Q Consensus 439 ~~~g~~~~a~~~~~~~~ 455 (508)
.+.|++..|++.|..+.
T Consensus 316 ~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 77777777777666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-11 Score=103.29 Aligned_cols=265 Identities=14% Similarity=0.087 Sum_probs=209.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCC---CCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 044044 222 LCRTGHTIVALNLFEEMANGNG---EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGF 298 (508)
Q Consensus 222 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 298 (508)
|...+|+..|-.......+... ........|-.--+.+..+|.+.|.+.+|.+.++...+. .|-+.||..|-..|
T Consensus 189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY 266 (478)
T KOG1129|consen 189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVY 266 (478)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHH
Confidence 4456666666654444332211 000001122222367889999999999999999998876 45677899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHH
Q 044044 299 CYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHAR 378 (508)
Q Consensus 299 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 378 (508)
.+..+++.|+.++.+-++. .+.|......+...+-..++.++|.++++...+.. +.++.....+...|.-.++.+-|+
T Consensus 267 ~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~Al 344 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMAL 344 (478)
T ss_pred HHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHH
Confidence 9999999999999998886 34444444556778888999999999999999874 446777777888888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 379 KLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPT--VVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
.+++++.+.| ..++..|+.+.-+|.-.+++|-++..|++....--.|+ ...|..+.......||+..|.+.|+-...
T Consensus 345 ryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 345 RYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 9999999999 55888999999999999999999999999887633333 45788888889999999999999998887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 457 NHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 457 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
.+. .+...++.|.-.-.+.|++++|..+++...+.
T Consensus 424 ~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 424 SDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 643 36778999988889999999999999998753
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.2e-09 Score=91.37 Aligned_cols=302 Identities=13% Similarity=0.028 Sum_probs=216.5
Q ss_pred hHHHHHHHHHh--cCCHHHHHHHHHHhhhcC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhH
Q 044044 179 TFTSLIKGLCA--ESRIMEAAALFTKHRVFA-CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVT 255 (508)
Q Consensus 179 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 255 (508)
.....+.+++. .++...|...+--+.... .+-|+.....+.+++...|+.++|+..|++....+ +-++..
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-------py~i~~ 268 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-------PDNVEA 268 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-------hhhhhh
Confidence 33333444433 344444444443333322 35567788899999999999999999999988765 233444
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 044044 256 YNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCK 335 (508)
Q Consensus 256 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 335 (508)
.....-.+.+.|+++....+...+.... ..+...|-.-.......++++.|+.+-++.++.. +-+...|..-..++..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence 4444555677888888888887776542 2234445555555667789999999998888763 2244455555667888
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHH
Q 044044 336 NGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLI-NWYC-KNKDVEEAL 413 (508)
Q Consensus 336 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~ 413 (508)
.+++++|.-.|+.++... +-+..+|..|+..|...|++.+|.-+-+...+. ++.+..+.+.+. ..+. ...--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 999999999999888652 346889999999999999999998877666554 245666666663 3333 233457888
Q ss_pred HHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 414 SLYSEMLSKGIKPT-VVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 414 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
++++..+.. .|+ ....+.+...|...|+.+.++.++++... ..||...-+.|.+.+...+.+++|.+.|...++
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr- 499 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR- 499 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 898888775 444 34567788889999999999999999887 468999999999999999999999999998875
Q ss_pred CCccC
Q 044044 493 KYELN 497 (508)
Q Consensus 493 g~~p~ 497 (508)
+.|+
T Consensus 500 -~dP~ 503 (564)
T KOG1174|consen 500 -QDPK 503 (564)
T ss_pred -cCcc
Confidence 3454
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-10 Score=108.65 Aligned_cols=238 Identities=21% Similarity=0.176 Sum_probs=178.3
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHhhC-----CC-CCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-
Q 044044 253 TVTYNTIIDGLCKEGFVDKAKELFLKMKDE-----NI-NPDVV-TYTSVIRGFCYANDWNEAKRLFIEMMDQ-----GV- 319 (508)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~- 319 (508)
..+...+...|...|+++.|+.+++...+. |. .|.+. ..+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666999999999999999999887654 21 22222 2344677888999999999999998753 21
Q ss_pred CC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHc-----CC-CCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHhC---C
Q 044044 320 QP-DVVTFSVIMDELCKNGKMDKASRLLELMIWR-----GV-NPN-TYTYNTLIDGYCLTDKIDHARKLFVSMESN---G 388 (508)
Q Consensus 320 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~ 388 (508)
.| -..+++.|..+|.+.|++++|...++.+.+- +. .|. ...++.++..+...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12 2347788888999999999999888776542 21 222 234666778888999999999999876542 1
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 044044 389 CMH----DVVSYNTLINWYCKNKDVEEALSLYSEMLSK----GI--KP-TVVTYNTLFLGLFEIHQVERALKLFDEMRR- 456 (508)
Q Consensus 389 ~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 456 (508)
+.+ -..+++.|...|...|++++|.+++++++.. +. .+ ....++.|...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 2457899999999999999999999998764 11 12 244678899999999999999999977542
Q ss_pred ---CCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 457 ---NHV--AADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 457 ---~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
.|. +....+|..|...|.+.|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 232 2335689999999999999999999988876
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-08 Score=96.64 Aligned_cols=377 Identities=15% Similarity=0.059 Sum_probs=264.8
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCH-HhHHHH
Q 044044 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNA-VTFTSL 183 (508)
Q Consensus 105 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l 183 (508)
.+...|..+.-++...|+++.+.+.|++.... ..-....|..+...+...|.-..|..+++........|+. ..+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 37788999999999999999999999998764 3446778999999999999999999999887655323433 333333
Q ss_pred HHHHH-hcCCHHHHHHHHHHhhhc--CC--CCCHhhHHHHHHHHHhc-----------CChHHHHHHHHHHHhCCCCCCc
Q 044044 184 IKGLC-AESRIMEAAALFTKHRVF--AC--EPDVFTYNTLINGLCRT-----------GHTIVALNLFEEMANGNGEFGV 247 (508)
Q Consensus 184 ~~~~~-~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~ 247 (508)
-..|. +.+.+++++.+-.++... +. ......|..+.-+|... ....++++.+++..+.++
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~---- 475 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP---- 475 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC----
Confidence 34443 447788888877776652 11 22344565555555432 234578889999988763
Q ss_pred cccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC------
Q 044044 248 VCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GVQ------ 320 (508)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~------ 320 (508)
..|++. ..+.--|+..++.+.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+..... |..
T Consensus 476 -~dp~~i--f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~ 552 (799)
T KOG4162|consen 476 -TDPLVI--FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDG 552 (799)
T ss_pred -CCchHH--HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchh
Confidence 234333 3344556778899999999999988866678889999998999999999999999877653 210
Q ss_pred ------------CCHHhHHHHHHHHHhc---------C--------------ChhHHHHHHHHH----HH----cC----
Q 044044 321 ------------PDVVTFSVIMDELCKN---------G--------------KMDKASRLLELM----IW----RG---- 353 (508)
Q Consensus 321 ------------~~~~~~~~l~~~~~~~---------~--------------~~~~a~~~~~~~----~~----~~---- 353 (508)
.-..|...++..+-.. | +..++......+ .. .+
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence 0012333333322200 0 111111111110 00 01
Q ss_pred -----C--CCC------HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 354 -----V--NPN------TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 354 -----~--~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
. .|+ ...|......+.+.+..++|...+.+..... +.....|...+..+...|.+++|.+.|....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 0 111 1234455567778888899988888887653 5677778888888999999999999999998
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 421 SKGIKPTVVTYNTLFLGLFEIHQVERALK--LFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 421 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
..++. ++...+++..++...|+...|.. ++.++.+.+. .+...|..+...+.+.|+.++|.+.|....+.
T Consensus 712 ~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 712 ALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 86433 56688999999999999888888 9999999754 48899999999999999999999999998754
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-10 Score=107.61 Aligned_cols=243 Identities=19% Similarity=0.131 Sum_probs=179.7
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCccccCCHhH-HHHHHHHHHccCCHHHHHHHHHHHhhC-----CC
Q 044044 212 VFTYNTLINGLCRTGHTIVALNLFEEMANGN-GEFGVVCKPNTVT-YNTIIDGLCKEGFVDKAKELFLKMKDE-----NI 284 (508)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~ 284 (508)
..+...+...|...|++++|+.+++.....- ..+|. ..|.+.+ .+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~-~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL-KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc-cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 4466668999999999999999998877651 01111 2344443 344788899999999999999998643 22
Q ss_pred C--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CCH-HhHHHHHHHHHhcCChhHHHHHHHHHHHc---
Q 044044 285 N--PDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-----GVQ-PDV-VTFSVIMDELCKNGKMDKASRLLELMIWR--- 352 (508)
Q Consensus 285 ~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 352 (508)
. .-..+++.|...|.+.|++++|...++...+. |.. +.. ..++.+...+...+++++|..++....+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1 12456778888999999999999888876542 211 222 24566777888999999999998876542
Q ss_pred CCCCC----HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC----C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 353 GVNPN----TYTYNTLIDGYCLTDKIDHARKLFVSMESNG----C---MHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 353 ~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
-+.++ ..+++.|...|...|++++|.+++++++... . .-....++.+...|.+.+++++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 11222 4689999999999999999999999886531 1 12245678889999999999999999987654
Q ss_pred C----CCC-C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 422 K----GIK-P-TVVTYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 422 ~----~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
. |+. | ...+|..|...|...|+++.|+++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 322 2 34588999999999999999999998776
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-10 Score=107.57 Aligned_cols=89 Identities=12% Similarity=0.090 Sum_probs=68.6
Q ss_pred HHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 044044 94 FDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCF 173 (508)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 173 (508)
+..+...+.. |+..+|..+|.-|+..|+.+.|- +|..|.....+.....++.++....+.++.+.+.
T Consensus 13 la~~e~~gi~-PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 13 LALHEISGIL-PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHhcCC-CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3344444555 77888888888888888888888 8888877776777778888888888888777665
Q ss_pred CCCHHhHHHHHHHHHhcCCHHH
Q 044044 174 TPNAVTFTSLIKGLCAESRIME 195 (508)
Q Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~ 195 (508)
.|-+.+|+.|..+|...|++..
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH
Confidence 5677888888888888888654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-10 Score=112.09 Aligned_cols=276 Identities=16% Similarity=0.180 Sum_probs=183.6
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
..+-.+...|+.|+..+|..+|.-||..|+.+.|- +|.-|.....+.+...++.++.+....|+.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34555666777888888888888888888877777 7777776666667777777777777777655543
Q ss_pred CCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC
Q 044044 243 GEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMD-QGVQP 321 (508)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~ 321 (508)
.|...+|..|..+|...||... |+...+ ..-.+...+...|.-..-..++..+.- .+.-|
T Consensus 80 -------ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lp 140 (1088)
T KOG4318|consen 80 -------EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLP 140 (1088)
T ss_pred -------CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccch
Confidence 2456677888888888877665 333222 122334455556655555555544322 23344
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcC-CCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044044 322 DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLT-DKIDHARKLFVSMESNGCMHDVVSYNTLI 400 (508)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (508)
|..+ .+....-.|-++.+.+++..+...... .+... +++-+... ..+++-..+.+...+ .++..+|..++
T Consensus 141 da~n---~illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l 211 (1088)
T KOG4318|consen 141 DAEN---AILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVL 211 (1088)
T ss_pred hHHH---HHHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHH
Confidence 4433 333445566677777776555433211 11111 24333332 234444444444433 58999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044044 401 NWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVL 480 (508)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 480 (508)
.+-...|+.+.|..++.+|.+.|++.+.+-|..|+-+ .++...++.+++.|.+.|+.|+..|+.-.+..+..+|...
T Consensus 212 ~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 212 KRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred HHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 9999999999999999999999998888878777655 8888999999999999999999999988887777766533
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.8e-10 Score=91.11 Aligned_cols=195 Identities=12% Similarity=-0.008 Sum_probs=144.6
Q ss_pred ccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 044044 76 SSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKM 155 (508)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (508)
..|.+|+..|++..|..-++++++.+|. +..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|...-.+|..
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 4566778888999999999999888887 78888888888888888888888888888764 44666777777788888
Q ss_pred CCcchHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 044044 156 GRVSHGFVVLGRILRSC-FTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNL 234 (508)
Q Consensus 156 g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 234 (508)
|++++|.+.|++.+... +..-..+|..+.-+..+.|+++.|...|++..... +....+...+.....+.|++..|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 88888888888877642 22334567777777777788888888888777664 22345666677777778888888888
Q ss_pred HHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 044044 235 FEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKD 281 (508)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (508)
++.....+ .++....-..|..--..|+-+.+.++=..+.+
T Consensus 196 ~~~~~~~~-------~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRG-------GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcc-------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 87777765 36666666667777777777766665555544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.4e-07 Score=84.33 Aligned_cols=394 Identities=13% Similarity=0.096 Sum_probs=224.3
Q ss_pred HHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCCcchHHHHHH
Q 044044 88 NEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSA-GLFPDIYTHSILINCFCKMGRVSHGFVVLG 166 (508)
Q Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 166 (508)
+..-..|+..+..... =+..|-..+..+.++|++-.....|++.+.. .+......|...+......|-++.+..+++
T Consensus 85 ~~vn~c~er~lv~mHk--mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyr 162 (835)
T KOG2047|consen 85 ESVNNCFERCLVFMHK--MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYR 162 (835)
T ss_pred HHHHHHHHHHHHHHhc--CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHH
Confidence 3334444444432222 3447888888889999999999999987654 233355678888888888999999999999
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc------CCCCCHhhHHHHHHHHHhcCCh---HHHHHHHHH
Q 044044 167 RILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF------ACEPDVFTYNTLINGLCRTGHT---IVALNLFEE 237 (508)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~ 237 (508)
+.++. ++..-+-.+..+++.+++++|-+.+...... ..+.+...|..+-+...+.-+. -....+++.
T Consensus 163 RYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~ 238 (835)
T KOG2047|consen 163 RYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRG 238 (835)
T ss_pred HHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHh
Confidence 99865 4445777888889999999999999876543 1234556677766666554332 234455566
Q ss_pred HHhCCCCCCccccCC--HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc--------------
Q 044044 238 MANGNGEFGVVCKPN--TVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYA-------------- 301 (508)
Q Consensus 238 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------- 301 (508)
+..+. +| ...|..|.+.|.+.|.++.|..+|++....- .++.-|..+..+|.+-
T Consensus 239 gi~rf--------tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~ 308 (835)
T KOG2047|consen 239 GIRRF--------TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADE 308 (835)
T ss_pred hcccC--------cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 55543 33 4589999999999999999999999987652 2333344443333321
Q ss_pred --C------CHHHHHHHHHHHHHcC-------------------------------------------CCCC------HH
Q 044044 302 --N------DWNEAKRLFIEMMDQG-------------------------------------------VQPD------VV 324 (508)
Q Consensus 302 --g------~~~~a~~~~~~~~~~~-------------------------------------------~~~~------~~ 324 (508)
| +++-....|+.+...+ +.|. ..
T Consensus 309 ~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~ 388 (835)
T KOG2047|consen 309 ESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGT 388 (835)
T ss_pred cccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhh
Confidence 1 1122222333322221 1110 11
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC-----------CC
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPN---TYTYNTLIDGYCLTDKIDHARKLFVSMESNG-----------CM 390 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~ 390 (508)
.|..+.+.|-..|+.+.|..+|++..+-..+-- ..+|..-..+-.+..+++.|.++++.....- .+
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 344444455555555555555555544322111 2233333444444455555555554443210 00
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H
Q 044044 391 ------HDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAAD-T 463 (508)
Q Consensus 391 ------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~ 463 (508)
.+...|...++.-...|-++....+|+++++..+. ++........-+..+.-++++.+++++-+..=..|+ .
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 01223444444444455555555555555554332 222222222333344445666666655444322333 3
Q ss_pred HHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCccCHH
Q 044044 464 YTYNNFIDGLCK---SGFVLEALELFRAIRDSKYELNIV 499 (508)
Q Consensus 464 ~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 499 (508)
..|+..+..+.+ .-..+.|..+|++.++ |..|...
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 466666655543 2368899999999988 6666554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=3e-12 Score=80.80 Aligned_cols=48 Identities=42% Similarity=0.747 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHHHHHHHHccC
Q 044044 461 ADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508 (508)
Q Consensus 461 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 508 (508)
||..+|+.+|++|++.|++++|.++|++|.+.|+.||..||++||++|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 566666666666666666666666666666666666666666666654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-08 Score=91.01 Aligned_cols=370 Identities=12% Similarity=0.089 Sum_probs=209.3
Q ss_pred ccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 044044 76 SSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKM 155 (508)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (508)
.-|...++.|+++.|+.+|.+++...|. |...|..-..+|...|++++|++=-.+.++.. +.-...|.....++.-.
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~--nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPT--NHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCC--ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhc
Confidence 3455667889999999999999999887 99999999999999999999998887777653 33466899999999999
Q ss_pred CCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH------HHhhhc---CCCCCHhhHHHHHHHHHh--
Q 044044 156 GRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALF------TKHRVF---ACEPDVFTYNTLINGLCR-- 224 (508)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~------~~~~~~---~~~~~~~~~~~l~~~~~~-- 224 (508)
|++++|+..|.+-++.. +.|...++.+..++.... ++.+.| ..+... ........|..++..+-+
T Consensus 84 g~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred ccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 99999999999888763 335556666666652110 000000 000000 000000011111111100
Q ss_pred --------cCChHHHHHHHHHHH-----hCC---------C------CCCc--c------ccCCHhHHHHHHHHHHccCC
Q 044044 225 --------TGHTIVALNLFEEMA-----NGN---------G------EFGV--V------CKPNTVTYNTIIDGLCKEGF 268 (508)
Q Consensus 225 --------~g~~~~A~~~~~~~~-----~~~---------~------~~~~--~------~~~~~~~~~~l~~~~~~~g~ 268 (508)
-.....|.-.+.... ..+ + .+.. . ...-..-...++....+..+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 000000000000000 000 0 0000 0 01122334556666666666
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH-------HHHHHHHhcCChhH
Q 044044 269 VDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFS-------VIMDELCKNGKMDK 341 (508)
Q Consensus 269 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~ 341 (508)
++.|.+.+....+.. -+..-++....+|...|.+.++...-....+.|-. ...-|+ .+..+|.+.++++.
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 677777666666543 24444555555666666666665555555444321 111122 22234445556666
Q ss_pred HHHHHHHHHHcCCCCCHHh-------------------------HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 044044 342 ASRLLELMIWRGVNPNTYT-------------------------YNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSY 396 (508)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 396 (508)
++..|.+.+.....|+... ...-...+.+.|++..|+..|.++++.. +.|...|
T Consensus 317 ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lY 395 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLY 395 (539)
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHH
Confidence 6666666554433322211 1111344556677777777777777765 5677777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 397 NTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
....-+|.+.|.+..|++-.+..++.. ++....|..=..++....++++|.+.|++..+.
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777777777777777766652 223445555566666667777777777777765
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.4e-09 Score=94.44 Aligned_cols=217 Identities=11% Similarity=-0.029 Sum_probs=125.9
Q ss_pred ChHHHHHHHHHhHHcCCCCC--CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHH
Q 044044 86 TPNEALCIFDYMLRMHPSPP--PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFV 163 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 163 (508)
..+.++.-+.+++...+..| ....|..+...+...|++++|+..|++..+.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566667777765443211 23457777777778888888888888887754 4456777777777788888888888
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044044 164 VLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 243 (508)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 243 (508)
.|++.++.. +.+..+|..+...+...|++++|++.|++..... |+..........+...+++++|...|++.....
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 887777653 2245566667777777777777777777776653 322211111222334567777777776544332
Q ss_pred CCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC---CC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 244 EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE---NI---NPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
.++...+ .+. ....|+..++ +.++.+.+. .. +.....|..+...+.+.|++++|+..|++..+.
T Consensus 196 ------~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 196 ------DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred ------CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2222211 122 2223444333 233333321 00 012245666666666667777777777666654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.3e-09 Score=93.60 Aligned_cols=96 Identities=16% Similarity=0.047 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 044044 214 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 293 (508)
Q Consensus 214 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 293 (508)
.|..+...+...|++++|...|++..+.+ +.+...|+.+...+...|++++|.+.|++..+.. +-+...|..
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~ 137 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-------PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLN 137 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 34455555555555555555555555543 2344555555555555555555555555555432 112344444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 294 VIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 294 l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
+...+...|++++|.+.++...+.
T Consensus 138 lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 138 RGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 555555555555555555555543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.3e-08 Score=82.50 Aligned_cols=310 Identities=11% Similarity=0.049 Sum_probs=175.6
Q ss_pred ccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhH-HHHHHHHHh
Q 044044 76 SSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTH-SILINCFCK 154 (508)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~ 154 (508)
..|..++..|++.+|+..|..+++.+|. +-.++-.-...|...|+...|+.=+.+.++. +||-..- ..-...+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~--~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPN--NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCch--hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 3455566778899999999999888776 6667777778888889999999888888875 6775432 223356778
Q ss_pred cCCcchHHHHHHHHHhCCCCCCH--Hh------------HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHH
Q 044044 155 MGRVSHGFVVLGRILRSCFTPNA--VT------------FTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLIN 220 (508)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~--~~------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 220 (508)
.|.+++|..-|+.+++.....+. .. ....+..+...|+...|+.....+.+.. +-|...|..-..
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rak 197 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAK 197 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHH
Confidence 89999999999988876421111 11 1112222334455555555555555443 334455555555
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 044044 221 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCY 300 (508)
Q Consensus 221 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 300 (508)
+|...|++..|+.=++...+.. ..+...+..+-..+...|+.+.++...++..+. .||...+-. .|
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs-------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~---~Y-- 263 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLS-------QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFP---FY-- 263 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcc-------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHH---HH--
Confidence 5555555555555554444432 233444444555555555555555555555442 233211100 00
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---hHHHHHHHHHcCCCHHHH
Q 044044 301 ANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTY---TYNTLIDGYCLTDKIDHA 377 (508)
Q Consensus 301 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A 377 (508)
....+....++. +......+++.++.+-.+...+........ .+..+-.++...|++.+|
T Consensus 264 -KklkKv~K~les----------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 264 -KKLKKVVKSLES----------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred -HHHHHHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 001111111111 112334455666666666665553221222 233344555666777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 378 RKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
++...++.+.. +.|+.++..-..+|.-...++.|+.-|+.+.+.
T Consensus 327 iqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 327 IQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 77777776653 334667777777777777777777777777765
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-08 Score=83.09 Aligned_cols=198 Identities=13% Similarity=0.013 Sum_probs=124.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHH
Q 044044 180 FTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTI 259 (508)
Q Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (508)
...|.-.|...|+...|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..... +.+..+.|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-------p~~GdVLNNY 109 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-------PNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-------CCccchhhhh
Confidence 4445566677777777777777776653 3345566677777777777777777777776654 3455666777
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 044044 260 IDGLCKEGFVDKAKELFLKMKDENI-NPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGK 338 (508)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 338 (508)
...+|..|++++|...|++...... .-...+|..+.-+..+.|+++.|...|++.++.. +-...+...+.....+.|+
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGD 188 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhccc
Confidence 7777777777777777777665411 1123456666666666777777777777766653 2233455556666666777
Q ss_pred hhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044044 339 MDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESN 387 (508)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (508)
+-.|...++.....+. ++....-..|+.-...|+-+.+.+.=.++.+.
T Consensus 189 y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 189 YAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred chHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777777766665544 56666666666666667766666655555443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-11 Score=77.01 Aligned_cols=47 Identities=60% Similarity=0.926 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 044044 392 DVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGL 438 (508)
Q Consensus 392 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (508)
|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.5e-08 Score=89.78 Aligned_cols=199 Identities=12% Similarity=0.027 Sum_probs=93.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCH--HhHHHHHHHHH
Q 044044 293 SVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGV-NPNT--YTYNTLIDGYC 369 (508)
Q Consensus 293 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~ 369 (508)
.+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++...+... .++. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 33445555566666666666655542 22334455555556666666666666655554321 1121 23334555566
Q ss_pred cCCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHH-HHCCC-CCCHhHHHHHHHHHHhc
Q 044044 370 LTDKIDHARKLFVSMESNGC-MHDVVSY-N--TLINWYCKNKDVEEALSL--YSEM-LSKGI-KPTVVTYNTLFLGLFEI 441 (508)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~~~~-~~~~~-~p~~~~~~~l~~~~~~~ 441 (508)
..|++++|..+++++..... .+..... + .++..+...|..+.+.+. +... ..... ............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 66666666666666543221 0111111 1 112222333322222222 1111 11000 01111222455666777
Q ss_pred CCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 442 HQVERALKLFDEMRRNHVA--------ADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 442 g~~~~a~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
|+.+.|..+++.+...... ...........++...|++++|.+.+.+....
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7788888887776643111 01112222333456788888888888877643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.5e-08 Score=92.20 Aligned_cols=363 Identities=12% Similarity=0.005 Sum_probs=248.4
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHH-hcCCcch
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD-IYTHSILINCFC-KMGRVSH 160 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~-~~g~~~~ 160 (508)
..|+++.+.+.|++....--. ..+.|+.+...+...|.-..|+.+++......-.|+ ...+...-..|. +.+.+++
T Consensus 335 ~~g~f~~lae~fE~~~~~~~~--~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ee 412 (799)
T KOG4162|consen 335 RCGQFEVLAEQFEQALPFSFG--EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEE 412 (799)
T ss_pred HHHHHHHHHHHHHHHhHhhhh--hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhh
Confidence 457899999999998766544 678899999999999999999999988765432343 333444444454 3466777
Q ss_pred HHHHHHHHHhC--C--CCCCHHhHHHHHHHHHhc-----------CCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhc
Q 044044 161 GFVVLGRILRS--C--FTPNAVTFTSLIKGLCAE-----------SRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRT 225 (508)
Q Consensus 161 a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 225 (508)
++..-.+++.. + -......|..+.-+|... ....++++.+++..+.+ +.|..+...+.--|+..
T Consensus 413 gldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~ 491 (799)
T KOG4162|consen 413 GLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQ 491 (799)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHH
Confidence 77777666651 1 122344555555555422 12357778888887765 33445555566667888
Q ss_pred CChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC-CCCC------------------
Q 044044 226 GHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE-NINP------------------ 286 (508)
Q Consensus 226 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------------------ 286 (508)
++.+.|.+..++..+.+ ...+...|..+.-.+...+++.+|+.+.+..... |...
T Consensus 492 R~l~sAl~~~~eaL~l~------~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~ 565 (799)
T KOG4162|consen 492 RQLTSALDYAREALALN------RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREE 565 (799)
T ss_pred HhHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHH
Confidence 99999999999999875 3567889999999999999999999998877654 1100
Q ss_pred ChhhHHHHHHHHHh---------c--------------CCHHHHHHHHHHHH--------HcC---------CCC--C--
Q 044044 287 DVVTYTSVIRGFCY---------A--------------NDWNEAKRLFIEMM--------DQG---------VQP--D-- 322 (508)
Q Consensus 287 ~~~~~~~l~~~~~~---------~--------------g~~~~a~~~~~~~~--------~~~---------~~~--~-- 322 (508)
...|...++..+-. . ++..++......+. ..+ +.| +
T Consensus 566 ~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~ 645 (799)
T KOG4162|consen 566 ALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSL 645 (799)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCch
Confidence 01122222222110 0 01111111111110 000 011 1
Q ss_pred ----HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 044044 323 ----VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNT 398 (508)
Q Consensus 323 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 398 (508)
...|......+.+.+..++|...+.+..+.. ......|......+...|.+++|.+.|......+ |.++.+.++
T Consensus 646 ~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~A 723 (799)
T KOG4162|consen 646 WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTA 723 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHH
Confidence 1133445556777888888887777776542 3356677777788889999999999999988876 557788899
Q ss_pred HHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 399 LINWYCKNKDVEEALS--LYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 399 l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
+..++.+.|+..-|.. ++.++.+.++. +...|..+...+.+.|+.+.|.+.|....+.
T Consensus 724 la~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 724 LAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9999999999888888 99999998654 8889999999999999999999999988764
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.5e-08 Score=90.50 Aligned_cols=202 Identities=8% Similarity=-0.047 Sum_probs=107.7
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH-HhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHH-
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGL-FPDI-YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS- 182 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~- 182 (508)
....|..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.+++..+.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 444555666666666666666555555543321 1121 112222334456677777777777766552 223333331
Q ss_pred --HHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHH
Q 044044 183 --LIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTII 260 (508)
Q Consensus 183 --l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (508)
+.......+....+.+.+.... ...+........+...+...|++++|...+++..... +.+...+..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------p~~~~~~~~la 155 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-------PDDAWAVHAVA 155 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCcHHHHHHH
Confidence 1111112344444444444311 1111122334445556667777777777777777754 34455666677
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCC-CCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 261 DGLCKEGFVDKAKELFLKMKDENI-NPDV--VTYTSVIRGFCYANDWNEAKRLFIEMMD 316 (508)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 316 (508)
.++...|++++|...+++...... .++. ..|..+...+...|++++|..++++...
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 777777777777777777665421 1121 2344566667777777777777777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.2e-08 Score=84.91 Aligned_cols=359 Identities=11% Similarity=0.082 Sum_probs=196.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH
Q 044044 114 FGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRI 193 (508)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 193 (508)
+.-+....++..|+.+++.-...+-.....+-.-+..++...|++++|...+..+.+.. .++...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 34456678899999999887654422222333445577789999999999999887743 56777777787777778888
Q ss_pred HHHHHHHHHhhhcCCCCCHhhHHH------------------------------HHHHHHhcCChHHHHHHHHHHHhCCC
Q 044044 194 MEAAALFTKHRVFACEPDVFTYNT------------------------------LINGLCRTGHTIVALNLFEEMANGNG 243 (508)
Q Consensus 194 ~~A~~~~~~~~~~~~~~~~~~~~~------------------------------l~~~~~~~g~~~~A~~~~~~~~~~~~ 243 (508)
.+|..+-.+..+ ++..... |.......-.+.+|++++......+
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn- 181 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN- 181 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 888887665432 1111112 2222223345667777777766543
Q ss_pred CCCccccCCHhHHHHH-HHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH---------
Q 044044 244 EFGVVCKPNTVTYNTI-IDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIE--------- 313 (508)
Q Consensus 244 ~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--------- 313 (508)
|+-...|.. .-+|.+..-++-+.+++.-..+. ++.++...|.......+.=+-..|.+-..+
T Consensus 182 -------~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~ 253 (557)
T KOG3785|consen 182 -------PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY 253 (557)
T ss_pred -------hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence 333333332 33455566666666666655554 222333333332222221111111111111
Q ss_pred -----HHHcC------------CCCC-----HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHH---
Q 044044 314 -----MMDQG------------VQPD-----VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGY--- 368 (508)
Q Consensus 314 -----~~~~~------------~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--- 368 (508)
+.+++ +-|. +..-..++--|.+.+++.+|..+.+++.- ..|.....-.+..+-
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQ 331 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQ 331 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhh
Confidence 11110 0000 01112233345666777777766655431 122222222222111
Q ss_pred --HcCCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 044044 369 --CLTDKIDHARKLFVSMESNGCMHDVV-SYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVE 445 (508)
Q Consensus 369 --~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 445 (508)
.....+.-|.+.|+-.-+.+..-|.. --..+.+.+.-..++++.+.++..+...-...|... ..+.++.+..|++.
T Consensus 332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~ 410 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYV 410 (557)
T ss_pred hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChH
Confidence 11112344555555443332222211 123445555556677888877777766533333333 45788999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 446 RALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 446 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
+|+++|-.+....++.+...-..|.++|.++|+++-|++++-++.
T Consensus 411 eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 411 EAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 999999888766566444444567788999999999988865553
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.9e-08 Score=84.68 Aligned_cols=292 Identities=12% Similarity=0.005 Sum_probs=216.6
Q ss_pred HhcCCcchHHHHHHHHHh-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHH
Q 044044 153 CKMGRVSHGFVVLGRILR-SCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVA 231 (508)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 231 (508)
+-.++...|.+.+-.+.. .-++.|+.....+...+...|+..+|+..|++....+ +-+..........+.+.|+++..
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhH
Confidence 344555555555444432 3467788899999999999999999999999988663 22233334445556788999998
Q ss_pred HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 044044 232 LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLF 311 (508)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 311 (508)
..+...+.... .-+...|..-+......++++.|+.+-++.++.. +.+...+..-...+...|+.++|.-.|
T Consensus 286 ~~L~~~Lf~~~-------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 286 SALMDYLFAKV-------KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred HHHHHHHHhhh-------hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHH
Confidence 88888887653 3445566666667777889999999999988763 224555555566778889999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHH-HHHHc-CCCHHHHHHHHHHHHhCCC
Q 044044 312 IEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLI-DGYCL-TDKIDHARKLFVSMESNGC 389 (508)
Q Consensus 312 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~ 389 (508)
+..+... +-+...|..++.+|...|++.+|..+-+...+. .+.+..+...+. ..+.. -.--++|.+++++..+..
T Consensus 358 R~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~- 434 (564)
T KOG1174|consen 358 RTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN- 434 (564)
T ss_pred HHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-
Confidence 9988752 456789999999999999999998888776654 334555555542 22222 223578999998887764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 390 MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH 458 (508)
Q Consensus 390 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (508)
|.-....+.+...+...|..+.++.++++.+.. .||....+.|...+...+.+++|...|....+.+
T Consensus 435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 333455677778888999999999999998874 6788889999999999999999999999888753
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-06 Score=77.79 Aligned_cols=141 Identities=9% Similarity=0.067 Sum_probs=94.7
Q ss_pred HHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCC
Q 044044 95 DYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFT 174 (508)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 174 (508)
++-++.+|. |..+|+.|++-+..+ .++++.+.++++... .+-....|..-|+.-.+..+++....+|.+.+.. .
T Consensus 10 ~~rie~nP~--di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--v 83 (656)
T KOG1914|consen 10 RERIEENPY--DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--V 83 (656)
T ss_pred HHHHhcCCc--cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--H
Confidence 444566777 999999999987666 999999999999865 3556778999999999999999999999998876 3
Q ss_pred CCHHhHHHHHHHHHhc-CCHHH----HHHHHHHh-hhcCCCCC-HhhHHHHHHHH---------HhcCChHHHHHHHHHH
Q 044044 175 PNAVTFTSLIKGLCAE-SRIME----AAALFTKH-RVFACEPD-VFTYNTLINGL---------CRTGHTIVALNLFEEM 238 (508)
Q Consensus 175 ~~~~~~~~l~~~~~~~-g~~~~----A~~~~~~~-~~~~~~~~-~~~~~~l~~~~---------~~~g~~~~A~~~~~~~ 238 (508)
.+...|...+.--.+. |+... ..+.|+-. .+.|..+- ...|+..+..+ ..+.+++...++|+++
T Consensus 84 LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqra 163 (656)
T KOG1914|consen 84 LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRA 163 (656)
T ss_pred hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence 4567777766543322 33222 22333332 23343332 23455555433 3344566677788887
Q ss_pred HhC
Q 044044 239 ANG 241 (508)
Q Consensus 239 ~~~ 241 (508)
...
T Consensus 164 l~t 166 (656)
T KOG1914|consen 164 LVT 166 (656)
T ss_pred hcC
Confidence 753
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.8e-07 Score=97.03 Aligned_cols=336 Identities=11% Similarity=0.007 Sum_probs=213.2
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC------CC--HhhHHHHHHHHH
Q 044044 152 FCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACE------PD--VFTYNTLINGLC 223 (508)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~--~~~~~~l~~~~~ 223 (508)
....|+++.+..+++.+.......+..........+...|++++|..++......-.. +. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3455666666666655421111112223334445556779999999999876543111 11 112223345566
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCccccCC----HhHHHHHHHHHHccCCHHHHHHHHHHHhhC----CCC-CChhhHHHH
Q 044044 224 RTGHTIVALNLFEEMANGNGEFGVVCKPN----TVTYNTIIDGLCKEGFVDKAKELFLKMKDE----NIN-PDVVTYTSV 294 (508)
Q Consensus 224 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l 294 (508)
..|++++|...+++...... ..+ ....+.+...+...|++++|...+++.... |.. .....+..+
T Consensus 464 ~~g~~~~A~~~~~~al~~~~------~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 464 NDGDPEEAERLAELALAELP------LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCC------CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 89999999999999876321 111 234566777788899999999999887643 111 112344556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCC--CHHhHHH
Q 044044 295 IRGFCYANDWNEAKRLFIEMMDQ----GVQ--P-DVVTFSVIMDELCKNGKMDKASRLLELMIWRG--VNP--NTYTYNT 363 (508)
Q Consensus 295 ~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~ 363 (508)
...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 67788899999999998887653 211 1 22334455667778899999999998876531 112 2334455
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhHHHHH
Q 044044 364 LIDGYCLTDKIDHARKLFVSMESNGCM-HDVVSY-----NTLINWYCKNKDVEEALSLYSEMLSKGIKPT---VVTYNTL 434 (508)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l 434 (508)
+...+...|+.++|.+.++++...... .....+ ...+..+...|+.+.|..++........... ...+..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 667788899999999999887542101 111111 1122445568999999999877654321111 1123567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044044 435 FLGLFEIHQVERALKLFDEMRRN----HVAAD-TYTYNNFIDGLCKSGFVLEALELFRAIRDSK 493 (508)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 493 (508)
..++...|+.++|...+++.... |...+ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77888999999999999988753 33222 3456677788999999999999999998653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-09 Score=97.02 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=38.5
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
+.|++.+|.-.|+.+++.+|. +.++|..|......+++=..|+..+++..+.. +-+......|...|.-.|.-.+|.
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred hcCCchHHHHHHHHHHhhChH--HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 344444455555555554444 44455555554444444444555555544432 223333444444444444444444
Q ss_pred HHHHHH
Q 044044 163 VVLGRI 168 (508)
Q Consensus 163 ~~~~~~ 168 (508)
.+++.-
T Consensus 374 ~~L~~W 379 (579)
T KOG1125|consen 374 KMLDKW 379 (579)
T ss_pred HHHHHH
Confidence 444443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.2e-06 Score=79.69 Aligned_cols=389 Identities=13% Similarity=0.070 Sum_probs=220.5
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchH
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHG 161 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 161 (508)
+..++|++|+.+.+.-...... +. -+---+.+..+.+..++|+..++... +.|..+...-.+.+.+.|++++|
T Consensus 57 Iq~~ky~~ALk~ikk~~~~~~~--~~-~~fEKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydea 129 (652)
T KOG2376|consen 57 IQLDKYEDALKLIKKNGALLVI--NS-FFFEKAYCEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEA 129 (652)
T ss_pred hhhhHHHHHHHHHHhcchhhhc--ch-hhHHHHHHHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHH
Confidence 4567899999665543211100 11 11233455668999999999998332 23444666677888999999999
Q ss_pred HHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 162 FVVLGRILRSCFTP-NAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 162 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
..+|+.+.+.+.+. +...-..++.. +....+. +.+..... ...+-..+......++..|++.+|+++++....
T Consensus 130 ldiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~-~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 130 LDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ-LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999998765332 12222222221 1111111 22222211 011222333445667789999999999998832
Q ss_pred CCCC------CC-ccccCCHh-HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChh----hHHHHHHHHHhcCCHH---
Q 044044 241 GNGE------FG-VVCKPNTV-TYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVV----TYTSVIRGFCYANDWN--- 305 (508)
Q Consensus 241 ~~~~------~~-~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~--- 305 (508)
.+.+ .. ..+..+.. .-.-+.-++-..|+-++|..+|...++.... |.. .-|.|+..-....-++
T Consensus 204 ~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~ 282 (652)
T KOG2376|consen 204 ICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDL 282 (652)
T ss_pred HHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHH
Confidence 1110 00 00001111 1223445667889999999999999887432 321 1222221110000000
Q ss_pred -------------HHHHHHH-------------------------HH-HHc-CCCCCHHhHHHHHHHHH--hcCChhHHH
Q 044044 306 -------------EAKRLFI-------------------------EM-MDQ-GVQPDVVTFSVIMDELC--KNGKMDKAS 343 (508)
Q Consensus 306 -------------~a~~~~~-------------------------~~-~~~-~~~~~~~~~~~l~~~~~--~~~~~~~a~ 343 (508)
.++..+. +. ... +..|.. .+..++..+. +...+..+.
T Consensus 283 l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~ 361 (652)
T KOG2376|consen 283 LKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAI 361 (652)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhH
Confidence 0000000 00 000 112222 2333333222 222466777
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044044 344 RLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFV--------SMESNGCMHDVVSYNTLINWYCKNKDVEEALSL 415 (508)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 415 (508)
+++...-+....-...+.-.+++.....|+++.|.+++. .+.+.+..| .+...+...+.+.++-+.|..+
T Consensus 362 e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~v 439 (652)
T KOG2376|consen 362 ELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAV 439 (652)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHH
Confidence 777776655433335566677788899999999999999 566555444 4455667778888877777777
Q ss_pred HHHHHHC--CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 416 YSEMLSK--GIKPT----VVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 416 ~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
+.+.+.. .-.+. ..++.-++..-.+.|+.++|..+++++.+. .++|..+...++.+|++. +++.|..+-+.+
T Consensus 440 l~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 440 LDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 7776642 01111 223333444445779999999999999986 356899999999999875 677777765444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-07 Score=83.73 Aligned_cols=372 Identities=14% Similarity=0.083 Sum_probs=242.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCC
Q 044044 114 FGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPN-AVTFTSLIKGLCAESR 192 (508)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 192 (508)
..+....|+++.|+..|-+.+... +++...|..-..++...|++++|++--.+..+. .|+ ...|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 456678899999999999998875 568888999999999999999998877776665 333 4578888888888999
Q ss_pred HHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHH---HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHcc---
Q 044044 193 IMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVA---LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKE--- 266 (508)
Q Consensus 193 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 266 (508)
+++|+..|.+-++.. +.+...+..+..++.......+. -.++..+....... .......|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~---~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTN---YSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhh---hhhccHHHHHHHHHhhcCcHh
Confidence 999999999988763 33566677777776111110000 00111111100000 000111223333222111
Q ss_pred -------CCHHHHHHHHHHH-----hhCC-------CCC----------------------ChhhHHHHHHHHHhcCCHH
Q 044044 267 -------GFVDKAKELFLKM-----KDEN-------INP----------------------DVVTYTSVIRGFCYANDWN 305 (508)
Q Consensus 267 -------g~~~~a~~~~~~~-----~~~~-------~~~----------------------~~~~~~~l~~~~~~~g~~~ 305 (508)
.+...+.-.+... ...+ ..| -..-...+.++..+..+++
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 0111111111100 0000 011 0112456677777888999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHH-------HHHHHHcCCCHHHHH
Q 044044 306 EAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNT-------LIDGYCLTDKIDHAR 378 (508)
Q Consensus 306 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g~~~~A~ 378 (508)
.|++.+....+.. -+..-++....+|...|.+.++...-+..++.|.. ...-|+. +..+|.+.++++.|+
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 9999999988864 45556677777899999999888888887776533 2222332 334666778899999
Q ss_pred HHHHHHHhCCCCCCHHH-------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 044044 379 KLFVSMESNGCMHDVVS-------------------------YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNT 433 (508)
Q Consensus 379 ~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 433 (508)
..|++.......|+... ...-...+.+.|++..|+..|.+++... +-|...|..
T Consensus 319 ~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsN 397 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSN 397 (539)
T ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHH
Confidence 99988766544443322 1122456778899999999999999986 347889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHH
Q 044044 434 LFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIV 499 (508)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 499 (508)
-.-+|.+.|.+..|++-.+...+.+ ++....|..=..++....++++|.+.|++.++. .|+..
T Consensus 398 RAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~ 460 (539)
T KOG0548|consen 398 RAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNA 460 (539)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhH
Confidence 9999999999999999888888762 223445555555666777899999999988864 35543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-07 Score=78.56 Aligned_cols=380 Identities=13% Similarity=0.095 Sum_probs=234.6
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHH-HHHHHhcCCcchHHHH
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSIL-INCFCKMGRVSHGFVV 164 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~ 164 (508)
++++|++++..-.+..|. +....+.+..+|....++..|-..++.+-.. .|...-|... .+.+-+.+.+..|+.+
T Consensus 25 ry~DaI~~l~s~~Er~p~--~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPR--SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred hHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 788999999888887776 8888999999999999999999999999875 5665555433 3566788899999999
Q ss_pred HHHHHhCCCCCCHHhHHHHH----HHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 165 LGRILRSCFTPNAVTFTSLI----KGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
...|... ....+..+ ......+++..+..+.++.... .+..+.+.......+.|++++|.+-|+...+
T Consensus 101 ~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 101 AFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred HHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHHHHh
Confidence 8887542 22222221 2234568888888888887643 3566666777777899999999999999988
Q ss_pred CCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC-------------Ch---------------hhHH
Q 044044 241 GNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINP-------------DV---------------VTYT 292 (508)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~~ 292 (508)
-++ ..| ...|+.. -+..+.|+++.|++...++.++|++. |+ ..+|
T Consensus 173 vsG-----yqp-llAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 173 VSG-----YQP-LLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred hcC-----CCc-hhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 764 333 3456544 45567789999999999998876432 11 1122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcC
Q 044044 293 SVIRGFCYANDWNEAKRLFIEMMDQ-GVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLT 371 (508)
Q Consensus 293 ~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (508)
.-...+.+.|+++.|.+.+..|.-+ ....|++|...+.-. -..+++.+..+-+.-+.+.+. ....|+..++-.||+.
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhh
Confidence 2233455778888888887777432 223466666554322 234556666666666776643 3466888888889998
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH---HH
Q 044044 372 DKIDHARKLFVSMESNGC-MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVE---RA 447 (508)
Q Consensus 372 g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~---~a 447 (508)
.-++.|-+++.+-..... ..+...|+.+=......-..++|++-++.+...- .-.......-+.--...++-. .+
T Consensus 324 eyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l-~~kLRklAi~vQe~r~~~dd~a~R~a 402 (459)
T KOG4340|consen 324 EYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGML-TEKLRKLAIQVQEARHNRDDEAIRKA 402 (459)
T ss_pred HHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 888888888754322211 1233344433322233445677766655543320 000000011111111111111 12
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 448 LKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
++-+++..+.- ..+..+-.+.|.+..++..+.++|+.-.+
T Consensus 403 i~~Yd~~LE~Y----LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 403 VNEYDETLEKY----LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHH----HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 22222222221 11223334556778889999999887664
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-07 Score=79.04 Aligned_cols=328 Identities=15% Similarity=0.123 Sum_probs=223.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHH-HHHHH
Q 044044 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS-LIKGL 187 (508)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 187 (508)
-+.+.+..+.+..++++|++++..-.++. +.+......+..+|-...++..|...++++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 36778888899999999999999988874 347778888899999999999999999998765 344444443 34566
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCHh--hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHc
Q 044044 188 CAESRIMEAAALFTKHRVFACEPDVF--TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCK 265 (508)
Q Consensus 188 ~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (508)
.+.+.+..|+++...|... ++.. +...-.......+++..+..++++....+ +..+.+...-...+
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---------~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---------EADGQINLGCLLYK 156 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---------ccchhccchheeec
Confidence 7889999999999887642 2221 22222233456789999999988876543 45556666667789
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------CH---------
Q 044044 266 EGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP-------------DV--------- 323 (508)
Q Consensus 266 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~--------- 323 (508)
.|+++.|.+-|+...+-+--.....|+..+ ++.+.|+++.|++...+++++|++. |.
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l 235 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL 235 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH
Confidence 999999999999988764333456777655 4568899999999999998886432 11
Q ss_pred ------HhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 044044 324 ------VTFSVIMDELCKNGKMDKASRLLELMIWRG-VNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSY 396 (508)
Q Consensus 324 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 396 (508)
..+|.-...+.+.|+++.|.+.+-.|.-+. ...|++|...+.-.-. .+++.+..+-+.-+.+.+ +-...|+
T Consensus 236 h~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETF 313 (459)
T KOG4340|consen 236 HQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETF 313 (459)
T ss_pred HHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHH
Confidence 123333345667889999998888775432 3456666655543222 344555555555555554 3456788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 044044 397 NTLINWYCKNKDVEEALSLYSEMLSKGI-KPTVVTYNTLFLGLF-EIHQVERALKLFDEMR 455 (508)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~ 455 (508)
..++-.||+..-++-|-.++.+-..... -.+...|+ |+.++. ..-..++|.+-++.+.
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 8899999999999998888765322211 11333343 333433 3456777776665443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-05 Score=77.80 Aligned_cols=226 Identities=14% Similarity=0.157 Sum_probs=157.3
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchH
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHG 161 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 161 (508)
++.+++..|+...+.+++.+|. ...+-..-.-.+.+.|+.++|..+++.....+.. |..+...+-.+|.+.++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn--~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPN--ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 4557899999999999999987 2222222223356899999999999998776534 888999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcC-C---------hHHH
Q 044044 162 FVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTG-H---------TIVA 231 (508)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~A 231 (508)
..+|++..+. .|+......+..+|.+.+.+.+-.+.=-++.+. .+-+...+-.+++...+.- . ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999999877 566888888888999888876554443333332 2345555556666655432 1 2346
Q ss_pred HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHH-HHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 044044 232 LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELF-LKMKDENINPDVVTYTSVIRGFCYANDWNEAKRL 310 (508)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 310 (508)
.+.++.+.+.++. --+..-.......+...|++++|++++ ....+.-..-+...-+.-+..+...++|.+..++
T Consensus 174 ~~m~~~~l~~~gk-----~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 174 EKMVQKLLEKKGK-----IESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred HHHHHHHhccCCc-----cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 6667777766521 112222333344556788899999999 4444443333445555667778888999999999
Q ss_pred HHHHHHcC
Q 044044 311 FIEMMDQG 318 (508)
Q Consensus 311 ~~~~~~~~ 318 (508)
-.++...|
T Consensus 249 ~~~Ll~k~ 256 (932)
T KOG2053|consen 249 SSRLLEKG 256 (932)
T ss_pred HHHHHHhC
Confidence 88888875
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-07 Score=97.41 Aligned_cols=373 Identities=12% Similarity=-0.036 Sum_probs=228.9
Q ss_pred CCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcch
Q 044044 81 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 160 (508)
+...|++.+|+.....+ +....-..........+...|+++.+..+++.+.......+..........+...|++++
T Consensus 351 ~~~~g~~~~Al~~a~~a---~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 351 WLAQGFPSEAIHHALAA---GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHCCCHHHHHHHHHHC---CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 34456666666544433 111001111222233455678888777777665221111122223344455667899999
Q ss_pred HHHHHHHHHhCCC------CCC--HHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCH----hhHHHHHHHHHhcCCh
Q 044044 161 GFVVLGRILRSCF------TPN--AVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDV----FTYNTLINGLCRTGHT 228 (508)
Q Consensus 161 a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~ 228 (508)
+..++......-- .+. ......+...+...|++++|...+++....-...+. ...+.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 9999887754311 111 112223345566789999999999987653212221 2445667777889999
Q ss_pred HHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC----CCC--C-ChhhHHHHHHHHHhc
Q 044044 229 IVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE----NIN--P-DVVTYTSVIRGFCYA 301 (508)
Q Consensus 229 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~ 301 (508)
++|...+++........+. .......+..+...+...|++++|...+++.... +.. + ....+..+...+...
T Consensus 508 ~~A~~~~~~al~~~~~~g~-~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDV-YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHhhhcc-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 9999999888754321110 1112335566777888999999999998886542 211 1 123344555667778
Q ss_pred CCHHHHHHHHHHHHHcC--CCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHhH-----HHHHHHHHcC
Q 044044 302 NDWNEAKRLFIEMMDQG--VQP--DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNP-NTYTY-----NTLIDGYCLT 371 (508)
Q Consensus 302 g~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~ 371 (508)
|++++|...+++..... ..+ ....+..+...+...|++++|.+.+..+....... ....+ ...+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 99999999998876531 112 22344556667888999999999998875421110 11111 1122445568
Q ss_pred CCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHhcCC
Q 044044 372 DKIDHARKLFVSMESNGCMHD---VVSYNTLINWYCKNKDVEEALSLYSEMLSK----GIKP-TVVTYNTLFLGLFEIHQ 443 (508)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~ 443 (508)
|+.+.|...+........... ...+..+..++...|++++|...+++.... |... ...+...+..++...|+
T Consensus 667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999877654321111 111345677888999999999999988764 2222 23456677888999999
Q ss_pred HHHHHHHHHHHHHC
Q 044044 444 VERALKLFDEMRRN 457 (508)
Q Consensus 444 ~~~a~~~~~~~~~~ 457 (508)
.++|...+.+..+.
T Consensus 747 ~~~A~~~L~~Al~l 760 (903)
T PRK04841 747 KSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998875
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-08 Score=90.35 Aligned_cols=249 Identities=14% Similarity=0.112 Sum_probs=132.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 044044 221 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCY 300 (508)
Q Consensus 221 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 300 (508)
-+.-.|++..++.-.+ ..... ...+......+.+++...|+++.++ .++... -.|.......+...+..
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~------~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~ 78 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFS------PENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSS 78 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTST------CHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCT
T ss_pred HHHHhhhHHHHHHHhh-ccCCC------chhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhC
Confidence 3344667776665554 22221 1223344455666677777665433 333222 24555555444444433
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHH
Q 044044 301 ANDWNEAKRLFIEMMDQGVQP-DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARK 379 (508)
Q Consensus 301 ~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 379 (508)
.++-+.++.-+++........ +..........+...|++++|+++++.. .+.......+..|.+.++++.|.+
T Consensus 79 ~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k 152 (290)
T PF04733_consen 79 PSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEK 152 (290)
T ss_dssp STTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHH
Confidence 344444444444433332221 2222222233455567777777766532 245566666777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 380 LFVSMESNGCMHDVVSYNTLINWYC----KNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
.++.|.+.+ .|. +...+..++. ..+.+.+|..+|+++.+. ..++..+.+.++.++...|++++|.+++++..
T Consensus 153 ~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 153 ELKNMQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 777776653 333 2233333332 233577777777776654 44566777777777777777777777777776
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 044044 456 RNHVAADTYTYNNFIDGLCKSGFV-LEALELFRAIRD 491 (508)
Q Consensus 456 ~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 491 (508)
+.+ +-+..++..++.+....|+. +.+.++++++..
T Consensus 229 ~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 229 EKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred Hhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 543 23555666666666666766 556666666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.7e-06 Score=72.89 Aligned_cols=100 Identities=14% Similarity=0.053 Sum_probs=59.6
Q ss_pred CCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhh-HHHH
Q 044044 140 PDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFT-YNTL 218 (508)
Q Consensus 140 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l 218 (508)
.++.-..-+...+...|++..|+.-|...++.+ +.+-.++..-...|...|+...|+.-+.+..+. +||-.. -..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 345555566677777777777777777666542 111122223334566667777777777776655 555432 2334
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC
Q 044044 219 INGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 219 ~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
...+.++|.++.|..=|+......
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~ 136 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE 136 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC
Confidence 455667777777777777777654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.2e-08 Score=89.07 Aligned_cols=253 Identities=13% Similarity=0.072 Sum_probs=192.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 044044 219 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGF 298 (508)
Q Consensus 219 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 298 (508)
..-+.+.|++.+|.-.|+.....+ |-+...|..|.......++-..|+..+.+..+.. +-+......|.-.|
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSy 363 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-------PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSY 363 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Confidence 445678999999999999999986 5678999999999999999999999999999864 23677888888899
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH---------HHHHhcCChhHHHHHHHHH-HHcCCCCCHHhHHHHHHHH
Q 044044 299 CYANDWNEAKRLFIEMMDQGVQPDVVTFSVIM---------DELCKNGKMDKASRLLELM-IWRGVNPNTYTYNTLIDGY 368 (508)
Q Consensus 299 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 368 (508)
...|.-.+|...++..+....+- .|.... ..+.....+....++|-++ ...+..+|+.+...|.-.|
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 99999999999999987653110 000000 0111112233444455444 4444457888888999999
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHH
Q 044044 369 CLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPT-VVTYNTLFLGLFEIHQVERA 447 (508)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 447 (508)
.-.|++++|.+.|+.++... |.|...||.|+..++...+.++|+..|.++++. .|+ +.....|.-+|...|.+++|
T Consensus 441 ~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred hcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHH
Confidence 99999999999999999875 668899999999999999999999999999996 454 34556788899999999999
Q ss_pred HHHHHHHHH---C------CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044044 448 LKLFDEMRR---N------HVAADTYTYNNFIDGLCKSGFVLEALEL 485 (508)
Q Consensus 448 ~~~~~~~~~---~------~~~~~~~~~~~li~~~~~~g~~~~A~~~ 485 (508)
.+.|-..+. . +..++...|..|=.++.-.++.|-+.+.
T Consensus 518 ~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 518 VKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 999876653 2 1222456788877778778877755544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.4e-07 Score=89.03 Aligned_cols=388 Identities=13% Similarity=0.023 Sum_probs=234.7
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHH
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVV 164 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 164 (508)
.+...|+..|-+.++.++. -...|..|+..|....+...|.+.|+.+.+.. .-|...+......|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld~~--~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS--LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 4578889999888888876 66789999999998889999999999998765 45777888899999999999999988
Q ss_pred HHHHHhCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044044 165 LGRILRSC-FTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 243 (508)
Q Consensus 165 ~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 243 (508)
.-..-+.. ...-...|....-.|.+.++...|+.-|+...... +.|...|..++.+|...|.+..|+++|.+....+
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr- 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR- 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-
Confidence 44433321 01112223344455778899999999999887765 5578899999999999999999999999887753
Q ss_pred CCCccccCC-HhHHHHHHHHHHccCCHHHHHHHHHHHhhC------CCCCChhhHHHHHHHHHhcCCHHHHHHHHH----
Q 044044 244 EFGVVCKPN-TVTYNTIIDGLCKEGFVDKAKELFLKMKDE------NINPDVVTYTSVIRGFCYANDWNEAKRLFI---- 312 (508)
Q Consensus 244 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~---- 312 (508)
|+ ...-....-..+..|.+++|...++..... +..--..++..+...+.-.|-..++...++
T Consensus 627 -------P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 627 -------PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred -------cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 33 223333444566789999999988877543 111122333333333333333333333333
Q ss_pred ---HHHHcCCCCCHHhHHHHHHHHHh---cC-C-h-hHHHHHHH-HHHHcCC--------------------CCCHHhHH
Q 044044 313 ---EMMDQGVQPDVVTFSVIMDELCK---NG-K-M-DKASRLLE-LMIWRGV--------------------NPNTYTYN 362 (508)
Q Consensus 313 ---~~~~~~~~~~~~~~~~l~~~~~~---~~-~-~-~~a~~~~~-~~~~~~~--------------------~~~~~~~~ 362 (508)
-........+...|..+-.+|.- .. + + .....++. +....+. ..+...|.
T Consensus 700 ~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~Wy 779 (1238)
T KOG1127|consen 700 SFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWY 779 (1238)
T ss_pred HHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHH
Confidence 22222212222223222222110 00 0 0 00000110 0111111 11233344
Q ss_pred HHHHHHHc----C----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 044044 363 TLIDGYCL----T----DKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTL 434 (508)
Q Consensus 363 ~l~~~~~~----~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 434 (508)
.++..|.+ . .+...|...+.+.++.. ..+..+||.|... ...|++.-|...|-+-+.... -+..+|..+
T Consensus 780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep-~~~~~W~Nl 856 (1238)
T KOG1127|consen 780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP-TCHCQWLNL 856 (1238)
T ss_pred HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-cchhheecc
Confidence 44433332 1 22346777777766653 4567778777665 556777777777766555432 256677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 435 FLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRA 488 (508)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 488 (508)
...+....+++.|...|....... +.|...|..........|+.-++..+|.-
T Consensus 857 gvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 777778888888888887776652 23555555544445556666666665543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.6e-08 Score=88.68 Aligned_cols=80 Identities=15% Similarity=0.041 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 044044 339 MDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDV-EEALSLYS 417 (508)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 417 (508)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+ +.+..+...++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44444444444332 23344444444444444444444444444444332 22333333344444444443 33334444
Q ss_pred HHH
Q 044044 418 EML 420 (508)
Q Consensus 418 ~~~ 420 (508)
++.
T Consensus 261 qL~ 263 (290)
T PF04733_consen 261 QLK 263 (290)
T ss_dssp HCH
T ss_pred HHH
Confidence 433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-06 Score=84.17 Aligned_cols=233 Identities=17% Similarity=0.145 Sum_probs=144.4
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC-C-------C-CCCHHhHHHHHHHH
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSA-G-------L-FPDIYTHSILINCF 152 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-------~-~~~~~~~~~l~~~~ 152 (508)
...|+.+.|.+....+ .+...|..+...+.+..+++-|.-.+-.|... | . .++ ..-..+....
T Consensus 739 vtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 4568888888877765 25668999999999988888877666555321 1 0 121 2222333444
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHH
Q 044044 153 CKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVAL 232 (508)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 232 (508)
.+.|.+++|..+|.+-.+. ..|=..|-..|.+++|.++-+.--... =-.||.....-+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHH
Confidence 5778899999999887643 344456777899999998876422211 2346666777777788899888
Q ss_pred HHHHHHHh----------CCCCC---CccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 044044 233 NLFEEMAN----------GNGEF---GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFC 299 (508)
Q Consensus 233 ~~~~~~~~----------~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 299 (508)
+.|++... .++.. -.....|...|.-.....-..|+.+.|+.+|....+ |-.++...|
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence 88876422 11000 000122444555555666667888888888877654 334455555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 044044 300 YANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELM 349 (508)
Q Consensus 300 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 349 (508)
-.|+.++|-++-++- | |......+.+.|-..|++.+|..+|.++
T Consensus 950 ~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred eccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 566666666654432 2 4455555666666666666666666554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.8e-06 Score=81.53 Aligned_cols=306 Identities=13% Similarity=0.176 Sum_probs=128.5
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHH
Q 044044 141 DIYTHSILINCFCKMGRVSHGFVVLGRILRS--CFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTL 218 (508)
Q Consensus 141 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 218 (508)
|+......+.++...+-..+-+++++++.-. .+..+...-|.|+-...+. +..+..++.+++...+ .| .+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~------~i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-AP------DI 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-ch------hH
Confidence 4445555566666666666666666666432 1222233333344333332 2334444444443221 11 12
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCC----------------CCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 219 INGLCRTGHTIVALNLFEEMANGNGE----------------FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 219 ~~~~~~~g~~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
...+...+-+++|..+|++....... +.. .--....|..+..+-.+.|...+|.+-|-+..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe-~~n~p~vWsqlakAQL~~~~v~dAieSyikad-- 1131 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAE-RCNEPAVWSQLAKAQLQGGLVKDAIESYIKAD-- 1131 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHH-hhCChHHHHHHHHHHHhcCchHHHHHHHHhcC--
Confidence 23334444455555555543211000 000 00112344444444444444444444443221
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHH
Q 044044 283 NINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYN 362 (508)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 362 (508)
|+..|.-+++...+.|.|++....+....+..-.|... ..++-+|++.++..+..+++ ..|+.....
T Consensus 1132 ----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~ 1198 (1666)
T KOG0985|consen 1132 ----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQ 1198 (1666)
T ss_pred ----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHH
Confidence 33344444444444455554444444444433333222 23344444444443333222 123333333
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 044044 363 TLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIH 442 (508)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 442 (508)
.+.+-|...|.++.|.-+|.. +..|..+...+...|+++.|...-+++ .+..||-.+-.+|...+
T Consensus 1199 ~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred HHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchh
Confidence 444444444444444433322 222444444455555555544433222 13334444444444333
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 443 QVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 443 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
.+.-| +|...++.....-..-++..|...|-+++-+.+++..+
T Consensus 1264 EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1264 EFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred hhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 32221 22222333344445556666666666666666655543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.2e-07 Score=90.99 Aligned_cols=217 Identities=12% Similarity=0.035 Sum_probs=102.8
Q ss_pred HHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----HHhHHHHHHHHHhcCCcchHHHHHHH
Q 044044 93 IFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD-----IYTHSILINCFCKMGRVSHGFVVLGR 167 (508)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~ 167 (508)
=|+..++.+|. +...|-..+....+.++.++|.+++++++.. +.+. ...|.++++.-...|.-+...++|++
T Consensus 1446 DferlvrssPN--SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1446 DFERLVRSSPN--SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHhcCCC--cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 34555555554 5556666666666666666666666666543 2111 12344444444444444444555555
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 044044 168 ILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 247 (508)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 247 (508)
+.+.. ..-.+|..|...|.+.+.+++|.++|+.|.+.- .....+|...+..+.++++-+.|..++.+....-+
T Consensus 1523 Acqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP---- 1595 (1710)
T KOG1070|consen 1523 ACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP---- 1595 (1710)
T ss_pred HHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc----
Confidence 54431 112234445555555555555555555554431 12344455555555555555555555555444310
Q ss_pred cccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 044044 248 VCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 321 (508)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 321 (508)
-.-.+......+..-.+.|+.+.+..+|+...... +--...|+..+..=.+.|+.+.+..+|+++...++.+
T Consensus 1596 -k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1596 -KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred -hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 00012233333444444555555555555544431 1123345555555555555555555555555444433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.9e-07 Score=89.58 Aligned_cols=210 Identities=10% Similarity=0.038 Sum_probs=110.7
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhh
Q 044044 211 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVT 290 (508)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 290 (508)
....|...|....+.++.++|.++.++++..-...- -.--...|.++++.-..-|.-+...++|+++.+. -.....
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE--eeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFRE--EEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch--hHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 344555666666666666666666666554310000 0011234555555555555555566666666553 112344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHhHHHHHHHHH
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVN-PNTYTYNTLIDGYC 369 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 369 (508)
|..|...|.+.+++++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.++++.-.. .......-.++.-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 555666666666666666666666554 2234445555666666666666666666665544111 12333444445555
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 044044 370 LTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKP 426 (508)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 426 (508)
+.|+.+.++.+|+...... |.-...|+..++.-.++|+.+.+..+|++++..++.|
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 5666666666666555442 3345556666666666666666666666666655443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.9e-07 Score=80.30 Aligned_cols=204 Identities=11% Similarity=0.043 Sum_probs=157.1
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCc--ch
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNK-HYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRV--SH 160 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~ 160 (508)
.+..++|+.+.+.+++.+|. +..+|+....++...| ++++++..++++.+.. +.+..+|+.....+.+.|+. ++
T Consensus 50 ~e~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPG--NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred CCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 35789999999999999998 8889998888888888 6899999999999865 44666787766666666653 67
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhc---CCh----HHHHH
Q 044044 161 GFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRT---GHT----IVALN 233 (508)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~ 233 (508)
++..++++++.. +-|..+|+...-++...|+++++++.++++++.+ +.|..+|+.....+.+. |.. ++.++
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 788898888775 4578899998888889999999999999999886 44778888777666554 222 46777
Q ss_pred HHHHHHhCCCCCCccccCCHhHHHHHHHHHHcc----CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 044044 234 LFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKE----GFVDKAKELFLKMKDENINPDVVTYTSVIRGFCY 300 (508)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 300 (508)
+..++.... +-|...|+.+...+... +...+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 205 y~~~aI~~~-------P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILAN-------PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhC-------CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 777777764 56788888888888773 34566888888776643 2355667777777764
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.6e-07 Score=88.88 Aligned_cols=402 Identities=13% Similarity=0.046 Sum_probs=247.8
Q ss_pred cCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhc
Q 044044 77 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAG-LFPDIYTHSILINCFCKM 155 (508)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 155 (508)
.|+.|.+..+...|.+.|+.+.+.++. +..++......|++..+++.|..+.-..-+.. ...-...|....-.+.+.
T Consensus 498 LG~iYrd~~Dm~RA~kCf~KAFeLDat--daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea 575 (1238)
T KOG1127|consen 498 LGQIYRDSDDMKRAKKCFDKAFELDAT--DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEA 575 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCch--hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCc
Confidence 344444455778999999999999988 99999999999999999999999843333221 111223455555667788
Q ss_pred CCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-HhhHHHHHHHHHhcCChHHHHHH
Q 044044 156 GRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPD-VFTYNTLINGLCRTGHTIVALNL 234 (508)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 234 (508)
++...|+.-|+..++.. +-|...|..++.+|..+|++..|+++|++.... .|+ ...-......-+..|.+.+|++.
T Consensus 576 ~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 576 HNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred cchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 89999999999988875 457889999999999999999999999998765 333 22222334455678999999999
Q ss_pred HHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHh-------hCCCCCChhhHHHHHHHHH--------
Q 044044 235 FEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMK-------DENINPDVVTYTSVIRGFC-------- 299 (508)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~~l~~~~~-------- 299 (508)
+..........-.....-..++..+...+.-.|-...+..++++.+ .+....+...|-.+-.+|.
T Consensus 653 l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~ 732 (1238)
T KOG1127|consen 653 LGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPS 732 (1238)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhccc
Confidence 9887654211000011112233333333333343334444443332 2211112222222222211
Q ss_pred ---------------hcCCH---H---HHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cC----ChhHHHHHHHHHH
Q 044044 300 ---------------YANDW---N---EAKRLFIEMMDQGVQPDVVTFSVIMDELCK----NG----KMDKASRLLELMI 350 (508)
Q Consensus 300 ---------------~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~a~~~~~~~~ 350 (508)
..+.. + -+.+.+-.-++ ...+..+|..++..|.+ .+ +...|...+...+
T Consensus 733 ~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV 810 (1238)
T KOG1127|consen 733 IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV 810 (1238)
T ss_pred chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 11111 1 01111111111 11223444444444433 11 2236777777777
Q ss_pred HcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 044044 351 WRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVT 430 (508)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 430 (508)
+.. ..+...|+.|.-. ...|++.-|...|-+-.... +.+..+|..+...+.+..+++.|...|.......+. |...
T Consensus 811 ~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~ 886 (1238)
T KOG1127|consen 811 SLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQ 886 (1238)
T ss_pred HHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHH
Confidence 653 3367777777655 66788888888887666554 567788999999999999999999999998876432 5566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 431 YNTLFLGLFEIHQVERALKLFDEMR----RNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 431 ~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
|..........|+.-++..+|..-. ..|--++...|......-..+|+.++-+...+++
T Consensus 887 WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 887 WLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 6666666667888888888887622 2244455555555555556677766655544443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.8e-06 Score=79.79 Aligned_cols=327 Identities=16% Similarity=0.127 Sum_probs=192.1
Q ss_pred CcccHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhC-C-------C-C
Q 044044 106 PVSSFNILFG--CLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRS-C-------F-T 174 (508)
Q Consensus 106 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-------~-~ 174 (508)
|..+-..++. .|...|+.+.|.+-.+.+. +...|..+.+.|.+..+++-|.-.+..|... | . .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4445555554 3556799999988877665 4577999999999999999888777666431 1 1 1
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHh
Q 044044 175 PNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 254 (508)
Q Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 254 (508)
++ ..-.-........|.+++|+.+|.+-+. |..|=..|...|.+++|+++-+.--.. .=..
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi---------HLr~ 859 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI---------HLRN 859 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce---------ehhh
Confidence 11 1112222233566999999999998765 344556677899999999986653221 1234
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCC-------------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 255 TYNTIIDGLCKEGFVDKAKELFLKMKDEN-------------------INPDVVTYTSVIRGFCYANDWNEAKRLFIEMM 315 (508)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 315 (508)
||......+-..++.+.|++.|++.-... -..|...|.....-+...|+.+.|+.+|....
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 67677777777888999999887643210 01133334444444445566666666665543
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 044044 316 DQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVS 395 (508)
Q Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 395 (508)
+ |-.+++..|-.|+.++|-++-++- | |......|.+.|-..|++.+|...|-+...
T Consensus 940 D---------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa--------- 995 (1416)
T KOG3617|consen 940 D---------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQA--------- 995 (1416)
T ss_pred h---------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------
Confidence 2 334555666677777777665542 2 555666777888888888888887766542
Q ss_pred HHHHHHHHHhc---------------CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH--------
Q 044044 396 YNTLINWYCKN---------------KDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFD-------- 452 (508)
Q Consensus 396 ~~~l~~~~~~~---------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~-------- 452 (508)
+...|+.|-.+ .+.-.|-++|++. |.. +...+..|-+.|.+.+|+++--
T Consensus 996 fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL 1067 (1416)
T KOG3617|consen 996 FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSAL 1067 (1416)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHH
Confidence 22222222111 1222233333321 110 1223344556666666665421
Q ss_pred HHH--HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 453 EMR--RNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 453 ~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
+++ +.....|+...+.-.+-++...++++|..++-..
T Consensus 1068 ~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1068 DLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 111 2233446667777777777777777777665443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=6e-06 Score=74.67 Aligned_cols=130 Identities=7% Similarity=-0.040 Sum_probs=57.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-CcchHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 044044 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMG-RVSHGFVVLGRILRSCFTPNAVTFTSLIKGL 187 (508)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (508)
++..+-..+...++.++|+.+++++++.. +-+...|+....++...| ++++++..++++.+.. +.+..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 44444445555556666666666665542 223334444444444444 3455555555554432 22333344333333
Q ss_pred HhcCCH--HHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044044 188 CAESRI--MEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG 241 (508)
Q Consensus 188 ~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 241 (508)
.+.|+. ++++.+++++.... +.+..+|+...-++...|+++++++.++++.+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333331 33444444444332 223444444444444444444444444444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.5e-07 Score=86.92 Aligned_cols=222 Identities=14% Similarity=0.138 Sum_probs=177.6
Q ss_pred ccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 044044 249 CKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSV 328 (508)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 328 (508)
.+|--..-..+...+...|-...|..+|++.. .|..++.+|+..|+..+|..+..+..++ +||...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34444445667788889999999999998764 5777888999999999999999888884 788888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044044 329 IMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD 408 (508)
Q Consensus 329 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 408 (508)
+.+......-+++|.++.+....+ .-..+.......++++++.+.|+.-.+.+ +....+|-.+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 888777776778888887765432 22222333345789999999998887765 5677889889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 409 VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRA 488 (508)
Q Consensus 409 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 488 (508)
++.|.+.|.......+ -+...|+.+..+|.+.++..+|...+.+..+.+ .-+...|...+....+-|.+++|++.+.+
T Consensus 535 ~q~av~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 9999999999887632 256789999999999999999999999999887 44666777777788899999999999999
Q ss_pred HHH
Q 044044 489 IRD 491 (508)
Q Consensus 489 m~~ 491 (508)
+.+
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 874
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.7e-06 Score=71.30 Aligned_cols=154 Identities=16% Similarity=0.048 Sum_probs=73.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044044 329 IMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD 408 (508)
Q Consensus 329 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 408 (508)
+-..+...|+-+....+....... ...|.......+....+.|++..|...+++..... ++|...|+.+..+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 334444445444444444443222 12233344445555555555555555555554443 4455555555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044044 409 VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELF 486 (508)
Q Consensus 409 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 486 (508)
+++|..-|.+..+.... +...++.|...+.-.|+.+.|..++......+. -|..+-..+.......|++++|..+.
T Consensus 150 ~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 150 FDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 55555555555554221 333445555555555555555555555544321 13444444444455555555555443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.8e-07 Score=86.01 Aligned_cols=234 Identities=12% Similarity=0.032 Sum_probs=170.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 044044 108 SSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGL 187 (508)
Q Consensus 108 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (508)
..-..+...+...|-...|+.+|+++. .|..++.+|+..|+..+|..+..+..+. +|+...|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 344566777788888888888888764 3667788888888888888888877763 67888888888777
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC
Q 044044 188 CAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG 267 (508)
Q Consensus 188 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 267 (508)
....-+++|.++.+.... .+-..+.....+.++++++.+.|+.-.+.+ +....+|.....+..+.+
T Consensus 468 ~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n-------plq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEIN-------PLQLGTWFGLGCAALQLE 533 (777)
T ss_pred cChHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcC-------ccchhHHHhccHHHHHHh
Confidence 666667788887775432 122223333445788899999988887765 456778888888888889
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 044044 268 FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLE 347 (508)
Q Consensus 268 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 347 (508)
+++.|.+.|....... +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.
T Consensus 534 k~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 9999999998887642 3356789999999999999999999999888876 4455667667777888899999988888
Q ss_pred HHHHcCC-CCCHHhHHHHHHHH
Q 044044 348 LMIWRGV-NPNTYTYNTLIDGY 368 (508)
Q Consensus 348 ~~~~~~~-~~~~~~~~~l~~~~ 368 (508)
++..... ..|..+...++...
T Consensus 612 rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 612 RLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHhhhhcccchhhHHHHHHH
Confidence 7765321 11444444444433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.1e-06 Score=78.25 Aligned_cols=169 Identities=19% Similarity=0.180 Sum_probs=81.9
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChh
Q 044044 261 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMD 340 (508)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 340 (508)
.+......|.+|+.+++.+...+. -...|..+...|...|+++.|.++|.+. ..++-.+..|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 334445555566655555554422 2233445555566666666666665332 12333455566666666
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 341 KASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
.|.++-++.. |.......|-+-..-+-+.|++.+|.+++-.+. .|+. .|.+|-+.|..+..+++.++-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 6665554433 223333444444444455555555555554332 2332 2445555555555555554432
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 421 SKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEM 454 (508)
Q Consensus 421 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (508)
... -..|.-.+..-+...|+.+.|++-|-+.
T Consensus 878 ~d~---l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 878 GDH---LHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhh---hhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 211 1223344455555566666666555433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.6e-06 Score=71.68 Aligned_cols=119 Identities=13% Similarity=0.098 Sum_probs=76.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 044044 336 NGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWY-CKNKD--VEEA 412 (508)
Q Consensus 336 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 412 (508)
.++.+++...++..++.+ +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666666553 3356667777777777777777777777776664 44566666666653 45555 3677
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 413 LSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 413 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
.+++++..+.+.. +...+..+...+...|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777777766433 5566666667777777777777777777665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.6e-06 Score=68.98 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 268 FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 268 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++.+.+
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 344444444444433 3344444444444444444555555544444444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.5e-05 Score=74.95 Aligned_cols=353 Identities=12% Similarity=0.156 Sum_probs=193.3
Q ss_pred HHHHHHHhHHcC-CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCcchHHHHHH
Q 044044 90 ALCIFDYMLRMH-PSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAG--LFPDIYTHSILINCFCKMGRVSHGFVVLG 166 (508)
Q Consensus 90 A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 166 (508)
-+++.++..+.. |...+++..+..+.++...+-..+-+++++++.-.+ +..+...-+.|+-...+. +..+..+..+
T Consensus 966 rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~ 1044 (1666)
T KOG0985|consen 966 RRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYIN 1044 (1666)
T ss_pred HHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHH
Confidence 345666665543 222456666667777777777777788877775322 111112223333222222 2222233333
Q ss_pred HHHhCC-----------------------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHH
Q 044044 167 RILRSC-----------------------FTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLC 223 (508)
Q Consensus 167 ~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 223 (508)
++.... +..+....+.|+.- -+.+++|.+.-++. ..+.+|..+..+-.
T Consensus 1045 rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL 1115 (1666)
T KOG0985|consen 1045 RLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQL 1115 (1666)
T ss_pred HhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHH
Confidence 332211 01222222323221 13334443333322 14567888888888
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 044044 224 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYAND 303 (508)
Q Consensus 224 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 303 (508)
+.|...+|++-|-+. .|+..|..+++...+.|.|++-.+++....+....|.+. ..|+-+|++.++
T Consensus 1116 ~~~~v~dAieSyika------------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1116 QGGLVKDAIESYIKA------------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNR 1181 (1666)
T ss_pred hcCchHHHHHHHHhc------------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhch
Confidence 888888888776542 357788899999999999999999888777765555543 477888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHH
Q 044044 304 WNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVS 383 (508)
Q Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 383 (508)
..+.++.+ ..||......+.+-|...|.++.|.-+|... .-|..|...+...|++..|.+.-++
T Consensus 1182 l~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1182 LTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 87766554 3467777777777777778777777666543 2344555555555555555443332
Q ss_pred HH------------------------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 044044 384 ME------------------------SNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF 439 (508)
Q Consensus 384 ~~------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (508)
.- ..++.....-...++..|...|-+++-+.+++..+... +.....|+-|.-.|.
T Consensus 1246 Ans~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1246 ANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYS 1324 (1666)
T ss_pred ccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHH
Confidence 21 11112223334455556666666666666655544321 123344555554444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 440 EIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
+- ++++..+-++-.-.. ...-.+++++.++..|.+..-+|..-.
T Consensus 1325 ky-kp~km~EHl~LFwsR------vNipKviRA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1325 KY-KPEKMMEHLKLFWSR------VNIPKVIRAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred hc-CHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33 344444433333221 112246677777777766665555443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.1e-06 Score=71.88 Aligned_cols=157 Identities=15% Similarity=0.046 Sum_probs=81.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 044044 111 NILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAE 190 (508)
Q Consensus 111 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (508)
..+...+...|+-+....+....... .+-|.......+....+.|++..|...+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 34444455555555555554443321 12344444445555555566666665555554432 44555555555555555
Q ss_pred CCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHH
Q 044044 191 SRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVD 270 (508)
Q Consensus 191 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 270 (508)
|++++|..-|.+..+.. ..+...++.+...+.-.|+++.|..++....... .-|..+-..+.......|+++
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-------~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-------AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-------CCchHHHHHHHHHHhhcCChH
Confidence 55555555555555442 2234445555555555555555555555555442 234445555555555555555
Q ss_pred HHHHHHH
Q 044044 271 KAKELFL 277 (508)
Q Consensus 271 ~a~~~~~ 277 (508)
+|.++..
T Consensus 220 ~A~~i~~ 226 (257)
T COG5010 220 EAEDIAV 226 (257)
T ss_pred HHHhhcc
Confidence 5555543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-06 Score=76.13 Aligned_cols=100 Identities=13% Similarity=0.037 Sum_probs=54.9
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCH--HhH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDI---YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNA--VTF 180 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 180 (508)
....+..++..+...|++++|...|+++.+.. +.+. ..+..+..++...|++++|...++++.+....... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34455555666666677777777776665542 1111 34455566666667777777777666654221111 133
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHhhhc
Q 044044 181 TSLIKGLCAE--------SRIMEAAALFTKHRVF 206 (508)
Q Consensus 181 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~ 206 (508)
..+..++... |+.++|.+.|+++...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 3334444433 5666677777766654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-05 Score=76.31 Aligned_cols=171 Identities=19% Similarity=0.184 Sum_probs=107.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCC
Q 044044 294 VIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDK 373 (508)
Q Consensus 294 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 373 (508)
.+.+.....+|.+|+.+++.+++... -..-|..+...|...|+++.|.++|-+.- .++-.|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 35566677888888888888877632 23356667778888888888888876541 35566788888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 374 IDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDE 453 (508)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 453 (508)
|+.|.++-.+... .......|-+-..-+-+.|++.+|.++|-.+- .|+ ..+.+|-+.|..+..+++.++
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 8888887766543 23344455555566677888888888774332 233 345667777877777777654
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 454 MRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 454 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
-.-.. -..|-..+..-|...|+.+.|..-|-+.
T Consensus 876 ~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 876 HHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hChhh---hhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 32111 1223334444555556655555554433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.72 E-value=2e-08 Score=56.67 Aligned_cols=32 Identities=50% Similarity=0.810 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 458 HVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 458 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777776
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.7e-06 Score=73.09 Aligned_cols=59 Identities=12% Similarity=0.050 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 433 TLFLGLFEIHQVERALKLFDEMRRNHV--AADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.+...+...|++++|+..+++..+... +.....+..+..++.+.|++++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344456666666666666666665421 11234556666666666666666666666653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-05 Score=67.59 Aligned_cols=30 Identities=10% Similarity=-0.025 Sum_probs=11.8
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044044 357 NTYTYNTLIDGYCLTDKIDHARKLFVSMES 386 (508)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (508)
+..+.+....++...|++++|..+++....
T Consensus 206 T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 206 TPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred ChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 333333333333334444444444433333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.2e-06 Score=84.30 Aligned_cols=170 Identities=12% Similarity=0.031 Sum_probs=135.4
Q ss_pred hHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 044044 64 ASLKKFLKERCKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIY 143 (508)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 143 (508)
..++.++.+.....+..+. +.+++.-.....+..|. +...+-.|.....+.|.+++|..+++.+.+.. +.+..
T Consensus 49 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~ 121 (694)
T PRK15179 49 RELLQQARQVLERHAAVHK----PAAALPELLDYVRRYPH--TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSE 121 (694)
T ss_pred HHHHHHHHHHHHHhhhhcc----hHhhHHHHHHHHHhccc--cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHH
Confidence 3455555555555555543 34444433344455555 78899999999999999999999999999863 33456
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHH
Q 044044 144 THSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLC 223 (508)
Q Consensus 144 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 223 (508)
.+..+...+.+.+++++|...+++.+... +.+......+..++.+.|++++|..+|+++...+ +.+..++..+...+.
T Consensus 122 a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~ 199 (694)
T PRK15179 122 AFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLT 199 (694)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 67788899999999999999999999875 4467778888899999999999999999999743 445889999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 044044 224 RTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 224 ~~g~~~~A~~~~~~~~~~~ 242 (508)
..|+.++|...|++.....
T Consensus 200 ~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 200 RRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HcCCHHHHHHHHHHHHHhh
Confidence 9999999999999998764
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.6e-07 Score=74.25 Aligned_cols=121 Identities=13% Similarity=0.151 Sum_probs=92.2
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH-HhcCC--cc
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCF-CKMGR--VS 159 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~ 159 (508)
..++.++++..++..++.+|. +...|..+...+...|++++|+..|++..+.. +.+...+..+..++ ...|+ .+
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~--~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQ--NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcH
Confidence 356678888888888888877 88888888888888888888888888888764 44666777777653 56666 47
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 044044 160 HGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFA 207 (508)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 207 (508)
+|.+++++.++.+ +.+...+..+...+.+.|++++|+..|+++.+..
T Consensus 128 ~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 128 QTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8888888888764 3366777777788888888888888888887764
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-05 Score=79.28 Aligned_cols=214 Identities=11% Similarity=0.062 Sum_probs=148.8
Q ss_pred HhHHHHHHHHHHccCCHHHHH-HHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 044044 253 TVTYNTIIDGLCKEGFVDKAK-ELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMD 331 (508)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 331 (508)
+.....+=.+...-|..++|- +++.++.+ ++..........+++.-+..... ..+.+...+..|..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~ 94 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVAR 94 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHH
Confidence 333444444555666666663 33333321 22333333333333333333322 24556888888999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 044044 332 ELCKNGKMDKASRLLELMIWRGVNPN-TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVE 410 (508)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 410 (508)
...+.|.+++|..+++...+. .|| ......++..+.+.+++++|...+++..... +.+......+..++.+.|+++
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchH
Confidence 999999999999999999876 444 6677778888999999999999999998876 567778888889999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 411 EALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 411 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
+|+.+|+++...+. -+..++..+..++...|+.++|...|++..+. ..+....|+.++ ++...-..+++++.
T Consensus 172 ~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~ 243 (694)
T PRK15179 172 QADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHHHHHHHHHHcC
Confidence 99999999998432 35778899999999999999999999999876 334445555443 23334455566654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-05 Score=80.14 Aligned_cols=238 Identities=9% Similarity=0.048 Sum_probs=134.6
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHH
Q 044044 141 DIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLIN 220 (508)
Q Consensus 141 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 220 (508)
+...+..|+..+...+++++|.++.+...+.. +-....|..+...+.+.++..++..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 45567777777777788888887777665542 22233333333455555554443333 2333
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 044044 221 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCY 300 (508)
Q Consensus 221 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 300 (508)
......++.....++..+... .-+...+..++.+|-+.|+.++|..+|+++.+.. +-|+...|.+...|..
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--------~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--------GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--------hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 333444444444444444442 2344567778888888888888888888888775 4467788888888887
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHH
Q 044044 301 ANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKL 380 (508)
Q Consensus 301 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 380 (508)
. +.++|.+++.+.... +...+++..+..++.++...... +...+..+.
T Consensus 163 ~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~--------------- 210 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE--------------- 210 (906)
T ss_pred h-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH---------------
Confidence 7 888888887776653 45555666666666666654221 222221111
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 044044 381 FVSMESN-GCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF 439 (508)
Q Consensus 381 ~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (508)
+.+... +...-+.++-.+-..|-..+++++++.+++.+++.... |.....-++.+|.
T Consensus 211 -~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 -RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred -HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 111111 11122333444445555666666666666666665333 4444444444443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-05 Score=79.30 Aligned_cols=170 Identities=9% Similarity=0.088 Sum_probs=117.1
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHH
Q 044044 104 PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIY-THSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 182 (508)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (508)
+.+...|..|+..+...+++++|.++.+...+. .|+.. .|-.+...+.+.++.+++..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~--------------- 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N--------------- 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------
Confidence 357889999999999999999999999987775 44433 334444466666665555444 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHH
Q 044044 183 LIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDG 262 (508)
Q Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 262 (508)
++.......++.-...+...+... .-+..++..+..+|-+.|+.++|..+++++.+.+ +.|..+.|.+...
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~n~~aLNn~AY~ 159 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-------RDNPEIVKKLATS 159 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHH
Confidence 223333334443333344444443 3345577788888888899999999999988875 5678888888888
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 263 LCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 263 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
|... +.++|.+++.+.... +...+++.++.++|.++...
T Consensus 160 ~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 160 YEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 8888 888888888777653 45555666666666666654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.3e-06 Score=66.43 Aligned_cols=93 Identities=11% Similarity=-0.064 Sum_probs=53.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 044044 363 TLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIH 442 (508)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 442 (508)
.+...+...|++++|...|+.+.... +.+...|..+..++...|++++|+..|++..+... .+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcC
Confidence 34455555666666666666655554 44555555566666666666666666666665432 24555555555666666
Q ss_pred CHHHHHHHHHHHHHC
Q 044044 443 QVERALKLFDEMRRN 457 (508)
Q Consensus 443 ~~~~a~~~~~~~~~~ 457 (508)
++++|+..|+...+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666665553
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00044 Score=64.19 Aligned_cols=399 Identities=14% Similarity=0.166 Sum_probs=228.0
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh-cCCcchH---
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCK-MGRVSHG--- 161 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a--- 161 (508)
.++++++.++++...-|. ....|..-|......++++...++|.+.+.. ..+...|...+.--.+ .|+...+
T Consensus 34 ~~~~~R~~YEq~~~~FP~--s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~YVR~~~~~~~~~r~~ 109 (656)
T KOG1914|consen 34 PIDKVRETYEQLVNVFPS--SPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLSYVRETKGKLFGYREK 109 (656)
T ss_pred CHHHHHHHHHHHhccCCC--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHHHHHHHccCcchHHHH
Confidence 689999999999988877 8889999999999999999999999998875 4567777776654333 3333332
Q ss_pred -HHHHHHHHh-CCCCC-CHHhHHHHHHHH---------HhcCCHHHHHHHHHHhhhcCCCC------CHhhHHHHHHHHH
Q 044044 162 -FVVLGRILR-SCFTP-NAVTFTSLIKGL---------CAESRIMEAAALFTKHRVFACEP------DVFTYNTLINGLC 223 (508)
Q Consensus 162 -~~~~~~~~~-~~~~~-~~~~~~~l~~~~---------~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~ 223 (508)
.+.|+-.+. .|..+ +-..|+..+..+ ....+++...++|+++...-+.. |-..|..-|+...
T Consensus 110 m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~t 189 (656)
T KOG1914|consen 110 MVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIIT 189 (656)
T ss_pred HHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHH
Confidence 233444333 34333 223455555433 23345666777788776531110 1112222222111
Q ss_pred -------hcCChHHHHHHHHHHHhCCCCC---CccccCC--------HhHHHHHHHHHHccCC------H--HHHHHHHH
Q 044044 224 -------RTGHTIVALNLFEEMANGNGEF---GVVCKPN--------TVTYNTIIDGLCKEGF------V--DKAKELFL 277 (508)
Q Consensus 224 -------~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~l~~~~~~~g~------~--~~a~~~~~ 277 (508)
+...+..|..+++++...-... ...++|. ...|..+|..--..+- . ....-.++
T Consensus 190 arK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yaye 269 (656)
T KOG1914|consen 190 ARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYE 269 (656)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHH
Confidence 2335666777777765421100 0001111 1123333332221111 0 11111222
Q ss_pred HHh-hCCCCCChhhHH-----HHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CChhH
Q 044044 278 KMK-DENINPDVVTYT-----SVIRGFCYAND-------WNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKN---GKMDK 341 (508)
Q Consensus 278 ~~~-~~~~~~~~~~~~-----~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~ 341 (508)
+.. -.+..|+..... ..-+.+...|+ -+++..+++...+.-..-+..+|..+...--.. ...+.
T Consensus 270 Q~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~ 349 (656)
T KOG1914|consen 270 QCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKK 349 (656)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhh
Confidence 221 112223221110 00112222333 455666666655543233444444433321111 12455
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 342 ASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMH-DVVSYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
...+++++...-...-..+|..+++.-.+..-++.|+.+|.++.+.+..+ ++..+++++..|| .++.+-|.++|+--+
T Consensus 350 ~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGL 428 (656)
T KOG1914|consen 350 VHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGL 428 (656)
T ss_pred hHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHH
Confidence 55666666544322224467777787788888889999999888876655 6677777777655 467888999988776
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 421 SKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAAD--TYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 421 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
.+ ..-+..--...+.-+...++-..+..+|++....++.+| ...|..+++.-..-|+...++++-+++.
T Consensus 429 kk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 429 KK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred Hh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 65 222333445666777788888889999998888765555 4588888888888898888888877765
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-06 Score=67.97 Aligned_cols=120 Identities=13% Similarity=-0.024 Sum_probs=94.2
Q ss_pred HHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 044044 91 LCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILR 170 (508)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 170 (508)
..+|+++++.+|. .+..+...+...|++++|...|+.+.... +.+...|..+..++.+.|++++|...|+++..
T Consensus 13 ~~~~~~al~~~p~-----~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSVDPE-----TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHcCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3467777777655 25567778889999999999999988764 55778888899999999999999999999987
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHH
Q 044044 171 SCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTL 218 (508)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 218 (508)
.. +.+...+..+..++...|+.++|+..|++..... +.+...|...
T Consensus 87 l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~ 132 (144)
T PRK15359 87 LD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIR 132 (144)
T ss_pred cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 64 4577888888889999999999999999988763 2244444433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.1e-08 Score=53.99 Aligned_cols=32 Identities=38% Similarity=0.688 Sum_probs=15.4
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHh
Q 044044 172 CFTPNAVTFTSLIKGLCAESRIMEAAALFTKH 203 (508)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 203 (508)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=9e-05 Score=61.90 Aligned_cols=189 Identities=14% Similarity=0.071 Sum_probs=138.6
Q ss_pred ccCCHHHHHHHHHHHhhC---C-CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCh
Q 044044 265 KEGFVDKAKELFLKMKDE---N-INPDVV-TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKM 339 (508)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 339 (508)
...+.++..+++.++... | ..++.. .|-.++-+....|+.+.|..+++++.+. ++-+..+-..-...+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 355788999988887643 3 444443 3455666777889999999999998876 333333333333345668899
Q ss_pred hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 340 DKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEM 419 (508)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (508)
++|.++++..++.+ +.|..++-.=+.+.-..|+--+|++-+....+. +..|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999998875 446666666666666677777888888777765 4779999999999999999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 044044 420 LSKGIKPTVVTYNTLFLGLFEIH---QVERALKLFDEMRRN 457 (508)
Q Consensus 420 ~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~ 457 (508)
+-..+ .+...+..+...+.-.| +.+.+.++|.+..+.
T Consensus 181 ll~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 88632 35666677777766555 567788888888875
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0014 Score=64.69 Aligned_cols=224 Identities=11% Similarity=0.112 Sum_probs=147.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH--HHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHH
Q 044044 117 LAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINC--FCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIM 194 (508)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (508)
....+++.+|++...++.+. .|+.. |..++.+ +.+.|+.++|..+++.....+.. |..+...+-.+|...|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 34678899999999998876 35543 3444444 45899999999888887665544 8889999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC-------
Q 044044 195 EAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG------- 267 (508)
Q Consensus 195 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 267 (508)
+|..+|++.... .|+......+..+|.+.+++.+-.+.--++.+. .+.+...+=.+++.....-
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-------~pk~~yyfWsV~Slilqs~~~~~~~~ 165 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-------FPKRAYYFWSVISLILQSIFSENELL 165 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCcccchHHHHHHHHHHhccCCcccc
Confidence 999999998876 567777788888999988887654444444433 2333443333444443321
Q ss_pred ---CHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCCHHhHHHHHHHHHhcCChhHH
Q 044044 268 ---FVDKAKELFLKMKDEN-INPDVVTYTSVIRGFCYANDWNEAKRLFI-EMMDQGVQPDVVTFSVIMDELCKNGKMDKA 342 (508)
Q Consensus 268 ---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 342 (508)
-..-|.+.++.+.+.+ ---+..-...-...+...|++++|.+++. ...+.-...+...-+.-+..+...+++.+.
T Consensus 166 ~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 166 DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 1234566666666653 11111111222233456788999999993 444433334444555566677777777777
Q ss_pred HHHHHHHHHcC
Q 044044 343 SRLLELMIWRG 353 (508)
Q Consensus 343 ~~~~~~~~~~~ 353 (508)
.++-.++...|
T Consensus 246 ~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 246 FELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhC
Confidence 77777776664
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.1e-06 Score=65.67 Aligned_cols=110 Identities=13% Similarity=0.048 Sum_probs=82.2
Q ss_pred HHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 044044 93 IFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSC 172 (508)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 172 (508)
.|+.++...|. +......+...+...|++++|...|+.+...+ +.+...+..+..++...|++++|..+++...+.+
T Consensus 5 ~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE--QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChh--hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666666665 55666777777888888888888888887754 4466777777888888888888888888877664
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 044044 173 FTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF 206 (508)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (508)
+.+...+..+...+...|++++|...|++..+.
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445666777777788888888888888877765
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00011 Score=67.35 Aligned_cols=114 Identities=18% Similarity=0.103 Sum_probs=51.6
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044044 333 LCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEA 412 (508)
Q Consensus 333 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 412 (508)
+...|++++|+..+..+++.. +-|+..+....+.+.+.|+.++|.+.++++.... +.....+-.+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHH
Confidence 334445555555555544431 1233333444444555555555555555554442 11133344444455555555555
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 044044 413 LSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALK 449 (508)
Q Consensus 413 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 449 (508)
+.++++..... +-|+..|..|..+|...|+..++..
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 55555444432 2244445555555555554444433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00019 Score=65.84 Aligned_cols=191 Identities=17% Similarity=0.138 Sum_probs=139.3
Q ss_pred cCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 044044 250 KPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVI 329 (508)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 329 (508)
.|+...+...+........-..+..++.+..+. .-...-|.. .-.+...|++++|+..++.++.. .+-|...+...
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~-A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGR-ALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHH-HHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHH
Confidence 455556666666554443333333333333321 112233433 33456889999999999998876 35566677777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044044 330 MDELCKNGKMDKASRLLELMIWRGVNPN-TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD 408 (508)
Q Consensus 330 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 408 (508)
...+.+.++.++|.+.++.+... .|+ ....-.+.++|.+.|++.+|+.+++...... +.|+..|..|..+|...|+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCc
Confidence 88999999999999999999977 455 6667778899999999999999999988775 7789999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044044 409 VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTY 466 (508)
Q Consensus 409 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 466 (508)
..++..-..+ .+...|+++.|+..+....+. ...+...|
T Consensus 424 ~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 424 RAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred hHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh-ccCCcHHH
Confidence 8888766544 455679999999999888876 33344333
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00023 Score=59.53 Aligned_cols=193 Identities=13% Similarity=0.086 Sum_probs=142.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCCccccCCHh-HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 044044 225 TGHTIVALNLFEEMANGNGEFGVVCKPNTV-TYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYAND 303 (508)
Q Consensus 225 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 303 (508)
..+.++.++++.++....... ...++.. .|..++-+....|+.+.|..+++.+... ++-+...-..-.-.+-..|+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhc
Confidence 446677777777766543210 0233433 4566677777889999999999998876 32232222222223445799
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHH
Q 044044 304 WNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVS 383 (508)
Q Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 383 (508)
+++|+++|+.+++.+ +.|.+++..-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 999999999999886 667778887777788889888999998888876 566999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC
Q 044044 384 MESNGCMHDVVSYNTLINWYCKNK---DVEEALSLYSEMLSKG 423 (508)
Q Consensus 384 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 423 (508)
+.-.. |.++..+..+...+.-.| +.+-|.++|.+.++..
T Consensus 180 ~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 180 LLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 98764 556666666666654444 6778899999998863
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.2e-06 Score=64.83 Aligned_cols=97 Identities=20% Similarity=0.108 Sum_probs=53.7
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGL 438 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (508)
.....+...+...|++++|.+.++.+...+ +.+...|..+...+...|++++|..++++..+.+ +.+...+..+..++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334444455555666666666666555543 3455555555556666666666666666555543 22344555555556
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 044044 439 FEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~ 457 (508)
...|++++|.+.|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666555553
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.5e-05 Score=60.40 Aligned_cols=126 Identities=14% Similarity=0.088 Sum_probs=81.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHH
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHD---VVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPT--VVTYNTL 434 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l 434 (508)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......|+ ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3677777777777777763 222 12233345667778888888888888887653332 2244556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 435 FLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
...+...|++++|+..++..... ......+....+.|.+.|++++|...|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77778888888888888664332 234556667778888888888888888764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.5e-05 Score=70.50 Aligned_cols=120 Identities=19% Similarity=0.155 Sum_probs=59.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 044044 364 LIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQ 443 (508)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 443 (508)
|+..+...++++.|..+++++.+.. |++ ...++..+...++-.+|++++.+.++... -+...+..-...|...++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 3344444455555555555555442 332 22344444445555555555555554321 134444444444555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 444 VERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 444 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
++.|+++.+++.+. .+.+..+|..|..+|.+.|++++|+..++.+
T Consensus 250 ~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555555555553 2223445555555555555555555555544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00051 Score=61.63 Aligned_cols=263 Identities=14% Similarity=0.020 Sum_probs=160.6
Q ss_pred HhhccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHH
Q 044044 73 RCKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD-IYTHSILINC 151 (508)
Q Consensus 73 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 151 (508)
-....|..+.+..++..|+..+..+.+..|. +...|..-+..+...|++++|.--.+.-.+. .|. ...+...-++
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd--~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c 126 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPD--NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQC 126 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCcc--chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhh
Confidence 3445677778888999999999999999998 7888888888889999999888777665543 221 1122222233
Q ss_pred HHhcCCcchHHHHHH------------H---HHhCCC-CCCHHhHHHHH-HHHHhcCCHHHHHHHHHHhhhcCCCCCHhh
Q 044044 152 FCKMGRVSHGFVVLG------------R---ILRSCF-TPNAVTFTSLI-KGLCAESRIMEAAALFTKHRVFACEPDVFT 214 (508)
Q Consensus 152 ~~~~g~~~~a~~~~~------------~---~~~~~~-~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 214 (508)
+...++..+|.+.++ . +..... +|.-..|..|- .++.-.|+.++|.+.--.+.+.. ..+...
T Consensus 127 ~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~a 205 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEA 205 (486)
T ss_pred hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHH
Confidence 333333333332222 1 111111 23334444433 55667799999998877776653 223333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhH-------------HHHHHHHHHccCCHHHHHHHHHHHhh
Q 044044 215 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVT-------------YNTIIDGLCKEGFVDKAKELFLKMKD 281 (508)
Q Consensus 215 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (508)
...-..++.-.++.+.|...|++.+..+ |+... +..-..-..+.|++..|.+.|.+.+.
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~ld--------pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRLD--------PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhccC--------hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 3333445556789999999999988865 33221 12223344567788888888877765
Q ss_pred C---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 044044 282 E---NINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV---TFSVIMDELCKNGKMDKASRLLELMIWR 352 (508)
Q Consensus 282 ~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 352 (508)
. ...++...|........+.|+.++|+.--++..+. |.. .|..-..++...+++++|.+-++...+.
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 23344455555556666777777777777666654 222 2223334555667777777777776655
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00012 Score=58.36 Aligned_cols=86 Identities=17% Similarity=0.204 Sum_probs=36.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044044 331 DELCKNGKMDKASRLLELMIWRGVNPN--TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD 408 (508)
Q Consensus 331 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 408 (508)
..+...|++++|...|+.+......+. ......+...+...|++++|...++..... ......+...+.+|...|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCC
Confidence 344445555555555555544431111 112223334444455555555555442221 1223334444445555555
Q ss_pred HHHHHHHHHH
Q 044044 409 VEEALSLYSE 418 (508)
Q Consensus 409 ~~~A~~~~~~ 418 (508)
+++|...|+.
T Consensus 134 ~~~A~~~y~~ 143 (145)
T PF09976_consen 134 YDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.9e-06 Score=48.75 Aligned_cols=33 Identities=55% Similarity=0.883 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccC
Q 044044 465 TYNNFIDGLCKSGFVLEALELFRAIRDSKYELN 497 (508)
Q Consensus 465 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 497 (508)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 578888888888888888888888888888886
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.1e-05 Score=68.83 Aligned_cols=126 Identities=13% Similarity=0.127 Sum_probs=95.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL 370 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (508)
...|+..+...++++.|+++++++.+.. |+ ....++..+...++..+|.+++++.++.. +.+...+..-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3455566666788899999999888764 44 34457777777888888888888888653 3356666667777888
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 371 TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
.++.+.|..+.+++.+.. +-+..+|..|..+|...|++++|+..+..+--.
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 888899999988888874 455668888999999999999998888766543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.6e-06 Score=47.49 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcc
Q 044044 464 YTYNNFIDGLCKSGFVLEALELFRAIRDSKYEL 496 (508)
Q Consensus 464 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 496 (508)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0077 Score=58.02 Aligned_cols=186 Identities=11% Similarity=0.008 Sum_probs=101.0
Q ss_pred hHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH----------HHHhcC
Q 044044 87 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILIN----------CFCKMG 156 (508)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~g 156 (508)
.++|.++.+. .|.+..|..+.......-.++.|...|-+.... +.......|-. .-.--|
T Consensus 679 ledA~qfiEd-------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g 748 (1189)
T KOG2041|consen 679 LEDAIQFIED-------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYG 748 (1189)
T ss_pred hHHHHHHHhc-------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhc
Confidence 4566655542 268889999998888877888888777665432 11111111111 112247
Q ss_pred CcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc-CCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 044044 157 RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF-ACEPDVFTYNTLINGLCRTGHTIVALNLF 235 (508)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 235 (508)
++++|.++|-++.++. ..+..+.+.|++-...++++.--.. .-..-..+|+.+...+.....|++|.+.|
T Consensus 749 ~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 749 EFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred chhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887776542 2355566677776666666531110 00011346777777777777777777777
Q ss_pred HHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 044044 236 EEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLF 311 (508)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 311 (508)
..-... ...+.++.+..++++-+.+-..+.+ +....-.+.+++.+.|.-++|.+.|
T Consensus 820 ~~~~~~---------------e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 820 SYCGDT---------------ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred Hhccch---------------HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHH
Confidence 653221 1234444444444444433333322 3333444455555555555555444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.8e-06 Score=59.29 Aligned_cols=82 Identities=17% Similarity=0.363 Sum_probs=53.4
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHH
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFV 163 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 163 (508)
.|+++.|+.+|+++.+..|..++...+..+..++.+.|++++|+.+++. .+.+ +.+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4678888888888888777412444555677888888888888888877 3222 1222334445677777888888877
Q ss_pred HHHH
Q 044044 164 VLGR 167 (508)
Q Consensus 164 ~~~~ 167 (508)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.4e-05 Score=66.71 Aligned_cols=133 Identities=15% Similarity=0.046 Sum_probs=90.8
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMES----NGC-MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK----GI-KPTV 428 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~ 428 (508)
..|..|...|.-.|+++.|+...+.-.+ .|- ......+..+..++.-.|+++.|.+.|+..... |- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3566666677778889988876654222 121 112345777888899999999999988875432 21 1234
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 429 VTYNTLFLGLFEIHQVERALKLFDEMRR----N-HVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
....+|...|.-..++++|+.++.+-.. . +..-....+.+|..+|...|..++|+.+.+..++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4566788888888889999988865432 1 1223456778899999999999999888777654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.4e-05 Score=45.71 Aligned_cols=33 Identities=58% Similarity=0.963 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEMLSKGIKPT 427 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 427 (508)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 355555555555555555555555555555544
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00019 Score=66.75 Aligned_cols=124 Identities=13% Similarity=0.133 Sum_probs=92.1
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 044044 318 GVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRG--VNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVS 395 (508)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 395 (508)
+.+.+......+++.+....+.+.+..++.+..... ...-..+..++++.|.+.|..+++..+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 445566777777777777777888888877776552 222244556888888888888888888888778888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI 441 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 441 (508)
+|.+++.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887776666667766666666555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0012 Score=59.37 Aligned_cols=157 Identities=13% Similarity=0.095 Sum_probs=86.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHH---H---------
Q 044044 297 GFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNT---L--------- 364 (508)
Q Consensus 297 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l--------- 364 (508)
++...|+.++|.++--..++.. ..+......-..++.-.++.+.+...|.+.+.. .|+...-.. .
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHh
Confidence 4455677777777766666542 112222222222444566777777777777755 333222111 1
Q ss_pred -HHHHHcCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 044044 365 -IDGYCLTDKIDHARKLFVSMESN---GCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE 440 (508)
Q Consensus 365 -~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 440 (508)
.+-..+.|++..|.+.|.+.+.. +..++...|.....+..+.|+.++|+.--++....... -...|..-..++..
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~ 333 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLA 333 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHH
Confidence 12234567777777777776654 23345555666666667777777777777666654100 11123333445556
Q ss_pred cCCHHHHHHHHHHHHHC
Q 044044 441 IHQVERALKLFDEMRRN 457 (508)
Q Consensus 441 ~g~~~~a~~~~~~~~~~ 457 (508)
.++|++|.+-+++..+.
T Consensus 334 le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 66777777777776654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00033 Score=54.94 Aligned_cols=96 Identities=15% Similarity=0.020 Sum_probs=74.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF 439 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (508)
..-.+..-+...|++++|..+|+.+...+ +.+..-|-.|..++-..|++++|+..|.......+ -++..+..+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 34445555677888888888888887765 55667777888888888888888888888888764 37777888888888
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 044044 440 EIHQVERALKLFDEMRRN 457 (508)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~ 457 (508)
..|+.+.|.+.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888888877754
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00045 Score=52.96 Aligned_cols=26 Identities=12% Similarity=-0.052 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 466 YNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 466 ~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
+..+..++.+.|++++|.+.++++.+
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 33333444444444444444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0002 Score=66.55 Aligned_cols=124 Identities=13% Similarity=0.146 Sum_probs=104.8
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHh
Q 044044 283 NINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ--GVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYT 360 (508)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 360 (508)
+.+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.+..++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44557778888899988889999999999988875 2222344667999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044044 361 YNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKN 406 (508)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 406 (508)
+|.|++.+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988877677777777666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00057 Score=52.41 Aligned_cols=100 Identities=13% Similarity=-0.004 Sum_probs=81.4
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhHHHHH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGC--MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIK--PTVVTYNTL 434 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l 434 (508)
.++..++..+.+.|++++|.+.|+.+.+... +.....+..++.++...|++++|...|+.+...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4566778888999999999999999987631 112456777899999999999999999999886322 124567888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 435 FLGLFEIHQVERALKLFDEMRRNH 458 (508)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~~~ 458 (508)
..++...|+.++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 899999999999999999999874
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00021 Score=52.03 Aligned_cols=91 Identities=25% Similarity=0.292 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044044 398 TLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSG 477 (508)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 477 (508)
.++..+...|++++|...++++.+... .+...+..+...+...|++++|.+.++...+.. +.+...+..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 344444555555555555555554321 122344445555555555555555555555432 123344445555555555
Q ss_pred CHHHHHHHHHHHH
Q 044044 478 FVLEALELFRAIR 490 (508)
Q Consensus 478 ~~~~A~~~~~~m~ 490 (508)
++++|...+++..
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.6e-05 Score=45.14 Aligned_cols=29 Identities=38% Similarity=0.650 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLSKGI 424 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 424 (508)
|+.++.+|.+.|+++.|.++|++|.+.|+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 34444444444444444444444444333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.9e-05 Score=70.00 Aligned_cols=91 Identities=5% Similarity=-0.100 Sum_probs=75.8
Q ss_pred CCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCc
Q 044044 79 QGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRV 158 (508)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 158 (508)
...+..|+++.|+..|+++++..|. +...|..+..++.+.|++++|+..++++++.. +.+...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~--~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN--NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 3345667899999999999998887 77888888889999999999999999998764 44677788888888899999
Q ss_pred chHHHHHHHHHhCC
Q 044044 159 SHGFVVLGRILRSC 172 (508)
Q Consensus 159 ~~a~~~~~~~~~~~ 172 (508)
++|+..|++.++..
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999998888763
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00024 Score=51.79 Aligned_cols=96 Identities=21% Similarity=0.222 Sum_probs=81.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF 439 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (508)
++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++....... +..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHH
Confidence 35567788889999999999999998874 445577888899999999999999999999887433 4567888899999
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 044044 440 EIHQVERALKLFDEMRRN 457 (508)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~ 457 (508)
..|++++|...+....+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999888764
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00033 Score=62.70 Aligned_cols=131 Identities=11% Similarity=0.082 Sum_probs=84.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044044 324 VTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL-TDKIDHARKLFVSMESNGCMHDVVSYNTLINW 402 (508)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 402 (508)
.+|..++....+.+..+.|+.+|.++.+.+ ..+..+|......-.+ .++.+.|..+|+...+. ++.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356677777777777888888888877543 2234444444444333 45566688888777765 35667777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 403 YCKNKDVEEALSLYSEMLSKGIKPTV---VTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
+...++.+.|..+|++.+.. +.++. ..|...+.--.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77888888888888877765 22222 36777777777777777777777777764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.4e-05 Score=64.57 Aligned_cols=105 Identities=12% Similarity=0.121 Sum_probs=73.2
Q ss_pred HHhhccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 044044 72 ERCKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINC 151 (508)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (508)
+..+.-|......++|++|+..|+++++..|. |...|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~--nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A 158 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT--NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 33444555566677788888888888877776 77777777777888888888877777777653 2234567777777
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCCHHhHH
Q 044044 152 FCKMGRVSHGFVVLGRILRSCFTPNAVTFT 181 (508)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 181 (508)
|...|++++|++.|.+.+.. .|+-.+|.
T Consensus 159 ~~~~gk~~~A~~aykKaLel--dP~Ne~~K 186 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALEL--DPDNESYK 186 (304)
T ss_pred HHccCcHHHHHHHHHhhhcc--CCCcHHHH
Confidence 77777777777777777654 45555544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0014 Score=57.10 Aligned_cols=173 Identities=9% Similarity=-0.005 Sum_probs=95.3
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCccc---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh--cC-
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSS---FNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCK--MG- 156 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g- 156 (508)
..|++++|++.|+.+....|. +..+ .-.++.++.+.+++++|+..+++..+....-....+...+.+.+. .+
T Consensus 44 ~~g~y~~Ai~~f~~l~~~yP~--s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~ 121 (243)
T PRK10866 44 QDGNWKQAITQLEALDNRYPF--GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDD 121 (243)
T ss_pred HCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcch
Confidence 457888999999999888877 2322 245667778889999999999888776321112223233333221 11
Q ss_pred --------------C---cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHH
Q 044044 157 --------------R---VSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLI 219 (508)
Q Consensus 157 --------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 219 (508)
+ ...|++.|+++++. |=...-..+|...+..+... =..--..+.
T Consensus 122 ~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la~~e~~ia 182 (243)
T PRK10866 122 SALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LAKYELSVA 182 (243)
T ss_pred hhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 0 11233333333332 22222233443333333211 001111355
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 044044 220 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMK 280 (508)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 280 (508)
..|.+.|.+..|+.-++.+.+..+. .+........++.+|...|..++|.++...+.
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~----t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPD----TQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCC----CchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 6677777777787777777776532 23344556666777777777777776665543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.1e-05 Score=55.97 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=43.8
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044044 406 NKDVEEALSLYSEMLSKGIK-PTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALE 484 (508)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 484 (508)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ .+.+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666666666665321 2333444466666677777777666665 22111 122333344666666777777776
Q ss_pred HHHH
Q 044044 485 LFRA 488 (508)
Q Consensus 485 ~~~~ 488 (508)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0018 Score=58.29 Aligned_cols=129 Identities=14% Similarity=0.173 Sum_probs=75.0
Q ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHh-
Q 044044 362 NTLIDGYCLT-DKIDHARKLFVSMESN----GCM-HDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIK-----PTVV- 429 (508)
Q Consensus 362 ~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~- 429 (508)
..+...|... |++++|.+.|++..+. +.+ .-..++..++..+.+.|++++|.++|++....... .+..
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 3344556666 7888888888776542 200 01234566777888889999999999888765322 1221
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDEMRRN--HVAAD--TYTYNNFIDGLCKS--GFVLEALELFRAIR 490 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~--~~~~~~li~~~~~~--g~~~~A~~~~~~m~ 490 (508)
.|...+-++...||...|.+.+++.... ++..+ ......|+.++-.. ..+++|+.-|+.+.
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 2334455667788888898888888754 22222 33556677766432 24556666665554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0014 Score=59.04 Aligned_cols=184 Identities=13% Similarity=0.132 Sum_probs=90.5
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCC--HHhHHHHHHHHHhcCCcch
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGL---FPD--IYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~ 160 (508)
++++|..+|+++ ...|...|++++|.+.|.+...... .+. ...|.....++.+. ++++
T Consensus 30 ~~e~Aa~~y~~A----------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~ 92 (282)
T PF14938_consen 30 DYEEAADLYEKA----------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDE 92 (282)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHH
T ss_pred CHHHHHHHHHHH----------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHH
Confidence 566666666554 3455666777777777766532110 000 11122222222222 4444
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhc-CChHHHHHHHHHHH
Q 044044 161 GFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRT-GHTIVALNLFEEMA 239 (508)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 239 (508)
|...+++ .+..|...|++..|-+.+.+ +...|... |++++|++.|++..
T Consensus 93 Ai~~~~~---------------A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~ 142 (282)
T PF14938_consen 93 AIECYEK---------------AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAA 142 (282)
T ss_dssp HHHHHHH---------------HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHH
T ss_pred HHHHHHH---------------HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHH
Confidence 4443333 23445555666655555544 44455566 78888888887766
Q ss_pred hCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC-----hh-hHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 240 NGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPD-----VV-TYTSVIRGFCYANDWNEAKRLFIE 313 (508)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~-~~~~l~~~~~~~g~~~~a~~~~~~ 313 (508)
......+. ...-...+..+...+.+.|++++|.++|++........+ +. .+...+-++...|++..|...+++
T Consensus 143 ~~y~~e~~-~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 143 ELYEQEGS-PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHCCC-hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 53210000 011123455667777778888888888877765422211 11 122223345556777777777776
Q ss_pred HHHc
Q 044044 314 MMDQ 317 (508)
Q Consensus 314 ~~~~ 317 (508)
....
T Consensus 222 ~~~~ 225 (282)
T PF14938_consen 222 YCSQ 225 (282)
T ss_dssp HGTT
T ss_pred HHhh
Confidence 6543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00046 Score=54.12 Aligned_cols=97 Identities=12% Similarity=-0.073 Sum_probs=67.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHH
Q 044044 178 VTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYN 257 (508)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (508)
.....+...+...|++++|.++|+.+.... +-+..-|..|..++...|++++|+..|......+ +.|...+.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-------~ddp~~~~ 107 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-------IDAPQAPW 107 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCCchHHH
Confidence 334445555667777777777777776654 3355667777777777777888887777777664 35666777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 258 TIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 258 ~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
.+..++...|+.+.|.+.|+..+..
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777777776554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00024 Score=51.51 Aligned_cols=76 Identities=18% Similarity=0.290 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCccCHHHHH
Q 044044 432 NTLFLGLFEIHQVERALKLFDEMRRNHV-AADTYTYNNFIDGLCKSG--------FVLEALELFRAIRDSKYELNIVSYN 502 (508)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~ 502 (508)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. +.-+.+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555566777777777777777777 777777777777665542 2345677888888888899999998
Q ss_pred HHHcc
Q 044044 503 CLIDG 507 (508)
Q Consensus 503 ~ll~~ 507 (508)
.++.+
T Consensus 109 ivl~~ 113 (120)
T PF08579_consen 109 IVLGS 113 (120)
T ss_pred HHHHH
Confidence 88764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0017 Score=56.08 Aligned_cols=91 Identities=11% Similarity=-0.000 Sum_probs=74.9
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChH
Q 044044 150 NCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTI 229 (508)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 229 (508)
.-+.+.+++++|+..|.++++.. +-|++.|..-..+|++.|.++.|++-.+..+..+ +....+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 34567789999999999998874 4577778888899999999999999888887763 334678999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 044044 230 VALNLFEEMANGN 242 (508)
Q Consensus 230 ~A~~~~~~~~~~~ 242 (508)
+|++.|++.++.+
T Consensus 167 ~A~~aykKaLeld 179 (304)
T KOG0553|consen 167 EAIEAYKKALELD 179 (304)
T ss_pred HHHHHHHhhhccC
Confidence 9999999988854
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0007 Score=62.94 Aligned_cols=89 Identities=12% Similarity=-0.091 Sum_probs=45.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044044 332 ELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEE 411 (508)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 411 (508)
.+...|++++|+..|+++++... .+...|..+..+|.+.|++++|...++++++.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 34445555555555555554422 134444455555555555555555555555443 3344445555555555555555
Q ss_pred HHHHHHHHHHC
Q 044044 412 ALSLYSEMLSK 422 (508)
Q Consensus 412 A~~~~~~~~~~ 422 (508)
|+..|++.++.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 55555555543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00038 Score=57.26 Aligned_cols=115 Identities=10% Similarity=-0.041 Sum_probs=72.4
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCCcchHHH
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFP--DIYTHSILINCFCKMGRVSHGFV 163 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 163 (508)
++..+...+..+.+..+.......|..++..+...|++++|+..|++.......+ ...++..+..++...|++++|+.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555666666665444442335566777777888888888888888887653222 23467777788888888888888
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHH-------hcCCHHHHHHHHH
Q 044044 164 VLGRILRSCFTPNAVTFTSLIKGLC-------AESRIMEAAALFT 201 (508)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~ 201 (508)
.+++..... +.....+..+...+. ..|++++|+..++
T Consensus 94 ~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 94 YYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 888877652 233444555555555 5555554444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0071 Score=52.78 Aligned_cols=59 Identities=12% Similarity=0.020 Sum_probs=34.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhH---HHHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 217 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVT---YNTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 217 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
.....+...|++++|++.|+++....+ -+... .-.++.++.+.+++++|...+++..+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP-------~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYP-------FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344445556777777777777666541 11111 234556666667777777777666654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0094 Score=57.46 Aligned_cols=207 Identities=13% Similarity=0.043 Sum_probs=129.9
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhC-CCC--------CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 044044 139 FPDIYTHSILINCFCKMGRVSHGFVVLGRILRS-CFT--------PNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACE 209 (508)
Q Consensus 139 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 209 (508)
.|.+..|..+.+.....-.++.|...|-+.... |++ .+...-.+=+.+| -|++++|.++|-++-..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh---
Confidence 578888988888777767777777766554321 221 0111111222222 38899999998776543
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChh
Q 044044 210 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVV 289 (508)
Q Consensus 210 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 289 (508)
| ..+..+.+.|++-...++++.--.... -..-...|+.+...++....|++|.+.|.....
T Consensus 764 -D-----LAielr~klgDwfrV~qL~r~g~~d~d-----D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-------- 824 (1189)
T KOG2041|consen 764 -D-----LAIELRKKLGDWFRVYQLIRNGGSDDD-----DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-------- 824 (1189)
T ss_pred -h-----hhHHHHHhhhhHHHHHHHHHccCCCcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 2 245667778888777777654222111 122345788899999999999999999876532
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 044044 290 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYC 369 (508)
Q Consensus 290 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (508)
....+.++.+..++++.+.+.+.+ +.+....-.+..++.+.|.-++|.+.+-+. + .|. ..+..|.
T Consensus 825 -~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv 889 (1189)
T KOG2041|consen 825 -TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCV 889 (1189)
T ss_pred -hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHH
Confidence 124567777777777766655444 445556667778888888888887766432 2 112 2345566
Q ss_pred cCCCHHHHHHHHHHH
Q 044044 370 LTDKIDHARKLFVSM 384 (508)
Q Consensus 370 ~~g~~~~A~~~~~~~ 384 (508)
..++|.+|.++-+..
T Consensus 890 ~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHHhc
Confidence 677777777666543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.8e-05 Score=43.00 Aligned_cols=30 Identities=47% Similarity=0.808 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044044 465 TYNNFIDGLCKSGFVLEALELFRAIRDSKY 494 (508)
Q Consensus 465 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 494 (508)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 566777777777777777777777766553
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00042 Score=50.27 Aligned_cols=79 Identities=15% Similarity=0.330 Sum_probs=55.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHhHH
Q 044044 257 NTIIDGLCKEGFVDKAKELFLKMKDENI-NPDVVTYTSVIRGFCYAN--------DWNEAKRLFIEMMDQGVQPDVVTFS 327 (508)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 327 (508)
...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455556666888888888888888888 778888888887776543 2335566777777777777777777
Q ss_pred HHHHHHHh
Q 044044 328 VIMDELCK 335 (508)
Q Consensus 328 ~l~~~~~~ 335 (508)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77766544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.002 Score=55.98 Aligned_cols=117 Identities=11% Similarity=0.040 Sum_probs=80.8
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC---CcchHH
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMG---RVSHGF 162 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~ 162 (508)
+++....-.+.-++.+|. |.+.|-.|...|...|+++.|...|++..+.. +++...+..+..++.... ...++.
T Consensus 137 ~~~~l~a~Le~~L~~nP~--d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 137 EMEALIARLETHLQQNPG--DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred cHHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 456666667777777777 88888888888888888888888888877653 456666666666554332 245666
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF 206 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (508)
++++++++.. +-|..+...|...+...|++.+|...|+.|...
T Consensus 214 ~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 214 ALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 7777777663 335555566666777777777777777777765
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0015 Score=56.66 Aligned_cols=100 Identities=16% Similarity=0.088 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHH
Q 044044 390 MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIH---QVERALKLFDEMRRNHVAADTYTY 466 (508)
Q Consensus 390 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~ 466 (508)
+-|...|-.|..+|...|+++.|..-|.+..+.. .+|...+..+..++..+. ...++.++|+++.+.+ +-|....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4455555555555555555555555555555542 123444444444443322 2344555555555442 2244444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 467 NNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 467 ~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
..|...+...|++.+|...|+.|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4444555555555555555555554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0011 Score=54.64 Aligned_cols=87 Identities=7% Similarity=-0.017 Sum_probs=61.8
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD--IYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSL 183 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (508)
....+..+...+...|++++|+..|++..+.+..+. ...+..+..++.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445677777778888888888888888876532222 3567777788888888888888888887753 2345566666
Q ss_pred HHHHHhcCCH
Q 044044 184 IKGLCAESRI 193 (508)
Q Consensus 184 ~~~~~~~g~~ 193 (508)
...+...|+.
T Consensus 113 g~~~~~~g~~ 122 (172)
T PRK02603 113 AVIYHKRGEK 122 (172)
T ss_pred HHHHHHcCCh
Confidence 6777766664
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.031 Score=51.27 Aligned_cols=130 Identities=23% Similarity=0.366 Sum_probs=96.3
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH-HHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESNG-CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTY-NTLF 435 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~ 435 (508)
..+|...+....+..-++.|+.+|-++.+.+ +.+++..+++++..++ .|+..-|.++|+--+.. .||...| ...+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456677777777888899999999988887 5677888888887655 57888889998876665 2344433 4556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 436 LGLFEIHQVERALKLFDEMRRNHVAAD--TYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 436 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.-+...++-+.|..+|+..++. +..+ ...|..+|+.-..-|+...+..+=++|.+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 6677888889999999866653 3333 56788888888888888888877777764
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0024 Score=52.69 Aligned_cols=85 Identities=15% Similarity=0.098 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044044 326 FSVIMDELCKNGKMDKASRLLELMIWRGVNPN--TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWY 403 (508)
Q Consensus 326 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (508)
+..+...+...|++++|...++++++....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+..++
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 44444445555555555555555544322111 2344455555555555555555555555542 22344444555555
Q ss_pred HhcCCHHH
Q 044044 404 CKNKDVEE 411 (508)
Q Consensus 404 ~~~g~~~~ 411 (508)
...|+...
T Consensus 117 ~~~g~~~~ 124 (172)
T PRK02603 117 HKRGEKAE 124 (172)
T ss_pred HHcCChHh
Confidence 55554333
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0011 Score=59.29 Aligned_cols=129 Identities=14% Similarity=0.187 Sum_probs=53.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 044044 255 TYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRG-FCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDEL 333 (508)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 333 (508)
+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444555555445555555555554321 1112222222222 11233444455555554443 233444444444545
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044044 334 CKNGKMDKASRLLELMIWRGVNPNT---YTYNTLIDGYCLTDKIDHARKLFVSMES 386 (508)
Q Consensus 334 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (508)
.+.++.+.|+.+|++.+.. +.++. ..|...++.-.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555554433 11111 2444444444444555544444444444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00037 Score=62.45 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHH----cCC-CCCH
Q 044044 289 VTYTSVIRGFCYANDWNEAKRLFIEMM----DQGVQP-DVVTFSVIMDELCKNGKMDKASRLLELMIW----RGV-NPNT 358 (508)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~ 358 (508)
..|..|.+.|.-.|+++.|+...+.-+ +.|-.. ....+..+.+++.-.|+++.|.+.|+.... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456666667777788888887655432 223211 223667778888888999988888776432 221 2234
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMESN-----GCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
.....|...|.-..++++|+.++.+-... +..-....+-.|..+|...|..++|+.+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45667777787778888888877653221 1122445677788888888888888887766544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0028 Score=61.68 Aligned_cols=135 Identities=13% Similarity=0.034 Sum_probs=73.2
Q ss_pred CCCCHHhHHHHHHHHHhc--C---ChhHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHcC--------CCHHHHHHHHHHH
Q 044044 319 VQPDVVTFSVIMDELCKN--G---KMDKASRLLELMIWRGVNPN-TYTYNTLIDGYCLT--------DKIDHARKLFVSM 384 (508)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~--~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 384 (508)
.+.+...|...+.+.... + +...|..+|+++++. .|+ ...+..+..++... .++..+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345566666666654332 2 255677777777765 333 44444443333221 1122333333333
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 385 ESN-GCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 385 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
... ..+.+...|..+.......|++++|...++++++.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 222 123344556666555555667777777777766653 45666666666777777777777777666654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00082 Score=55.26 Aligned_cols=95 Identities=15% Similarity=0.068 Sum_probs=64.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC--CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHh
Q 044044 177 AVTFTSLIKGLCAESRIMEAAALFTKHRVFACEP--DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 254 (508)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 254 (508)
...|..+...+...|++++|+..|++.......+ ...+|..+...+...|++++|+..++...... +....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-------~~~~~ 107 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-------PFLPQ 107 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cCcHH
Confidence 4456666777777788888888888876553222 23477888888888899999999988888754 33345
Q ss_pred HHHHHHHHHH-------ccCCHHHHHHHHHH
Q 044044 255 TYNTIIDGLC-------KEGFVDKAKELFLK 278 (508)
Q Consensus 255 ~~~~l~~~~~-------~~g~~~~a~~~~~~ 278 (508)
.+..+...+. ..|++++|...+++
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5666666665 56666655544443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=6e-05 Score=51.09 Aligned_cols=62 Identities=24% Similarity=0.282 Sum_probs=48.4
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSIL 148 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 148 (508)
..|++++|+..|+.++...|. +...+..++.+|.+.|++++|.++++++... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 457888999999999888887 8888888888999999999999999888875 4554444433
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.066 Score=52.45 Aligned_cols=316 Identities=12% Similarity=0.072 Sum_probs=170.6
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhc
Q 044044 148 LINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR--IMEAAALFTKHRVFACEPDVFTYNTLINGLCRT 225 (508)
Q Consensus 148 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 225 (508)
++.-+...+.+..|+++-..+-..-.. ...+|.....-+.+..+ -+++++..++=.... -.+..+|..+.......
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQE 520 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHhc
Confidence 445556667777777776665322111 14566666666665532 223333332222111 13456788888888888
Q ss_pred CChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC-----------CCCChhhHHHH
Q 044044 226 GHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDEN-----------INPDVVTYTSV 294 (508)
Q Consensus 226 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l 294 (508)
|+++-|..+++.=...+.... .-.+..-+...+.-+...|+.+-...++-.+..+- .+.....|.-+
T Consensus 521 GR~~LA~kLle~E~~~~~qV~--lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~ 598 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVP--LLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQF 598 (829)
T ss_pred CcHHHHHHHHhcCCCccchhH--HHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 999888888765332221000 01122234445556667777777776666554431 11111112211
Q ss_pred HH--------HHHhcCCHHHHHHHH--HHHHHc-CCCCCHHhHHHHHHHHHhcCChhHHHH----------HHHHHHH-c
Q 044044 295 IR--------GFCYANDWNEAKRLF--IEMMDQ-GVQPDVVTFSVIMDELCKNGKMDKASR----------LLELMIW-R 352 (508)
Q Consensus 295 ~~--------~~~~~g~~~~a~~~~--~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~----------~~~~~~~-~ 352 (508)
++ .+.+.++-.++...| +..... .+.+-........+.+.+.....-..+ +.+.+.. .
T Consensus 599 ~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~ 678 (829)
T KOG2280|consen 599 MRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQF 678 (829)
T ss_pred HHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 011111111111111 110000 001111122233344444433221111 1111111 1
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 044044 353 GVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYN 432 (508)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 432 (508)
|......+.+--+.-+...|+..+|.++-.+.. .||...|-.-+.+++..+++++-+++-+... .+.-|.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~ 748 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYL 748 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCch
Confidence 223334455666677778899999998887765 5788889989999999999998777765543 245577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044044 433 TLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELF 486 (508)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 486 (508)
-...+|.+.|+.++|.+++-+.... .-.+.+|.+.|++.+|.++-
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHH
Confidence 7888999999999999998765431 14677888999998887754
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.02 Score=45.92 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=68.2
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCC-CCCHhhHHH
Q 044044 139 FPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFAC-EPDVFTYNT 217 (508)
Q Consensus 139 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ 217 (508)
-|....-..|..++.+.|+..+|...|++....-+..|....-.+.++....+++.+|...++++.+... ..++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3455555556666666666666666666665544445555555556666666666666666666554421 011233344
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHH
Q 044044 218 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKE 274 (508)
Q Consensus 218 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 274 (508)
+...+...|.+..|..-|+...... |+...-......+.+.|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y--------pg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY--------PGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC--------CCHHHHHHHHHHHHHhcchhHHHH
Confidence 5555666666666666666665532 333333333344445554444433
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=7.1e-05 Score=41.34 Aligned_cols=27 Identities=37% Similarity=0.765 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
|+.++++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.003 Score=61.50 Aligned_cols=134 Identities=12% Similarity=0.044 Sum_probs=97.1
Q ss_pred CCcccHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCC--------cchHHHHHHHHHh
Q 044044 105 PPVSSFNILFGCLAKN-----KHYDTVLSLFKRLNSAGLFPD-IYTHSILINCFCKMGR--------VSHGFVVLGRILR 170 (508)
Q Consensus 105 ~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~--------~~~a~~~~~~~~~ 170 (508)
.+..+|...+++.... ++...|+.+|+++.+. .|+ ...|..+..++..... +..+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 5778999988886543 2377899999999986 454 4455554444332211 2233333444333
Q ss_pred C-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 171 S-CFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 171 ~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
. ..+.+...|..+.......|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2 234456778888777777899999999999999874 688899999999999999999999999998865
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0089 Score=50.76 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=29.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 218 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 218 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
....+...|++.+|++.|+.+....+. .+--......++.++.+.|++++|...+++..+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~----s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPN----SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TT----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344445566666666666666554321 0111223444555566666666666666665543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0037 Score=47.28 Aligned_cols=91 Identities=18% Similarity=0.064 Sum_probs=46.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhHHHHHHHHHHh
Q 044044 365 IDGYCLTDKIDHARKLFVSMESNGCMHD--VVSYNTLINWYCKNKDVEEALSLYSEMLSKGIK--PTVVTYNTLFLGLFE 440 (508)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~ 440 (508)
..++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|+.++++....... -+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3445556666666666666666553322 223444555666666666666666666554211 011122223345556
Q ss_pred cCCHHHHHHHHHHHH
Q 044044 441 IHQVERALKLFDEMR 455 (508)
Q Consensus 441 ~g~~~~a~~~~~~~~ 455 (508)
.|+.++|++.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 666666666654443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.54 E-value=4e-05 Score=51.39 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=33.9
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSA 136 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 136 (508)
+..|++++|+..|+++++..|. +...+..+..++...|++++|...|+++.+.
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQDPD--NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456666666666666666655 6666666666666666666666666666553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.009 Score=45.22 Aligned_cols=56 Identities=23% Similarity=0.199 Sum_probs=25.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 401 NWYCKNKDVEEALSLYSEMLSKGIKPT--VVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
.++-..|+.++|+.+|++.+..|.... ...+..+...+...|++++|+.++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444555555555555544443322 22333444444555555555555544443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.067 Score=48.27 Aligned_cols=288 Identities=11% Similarity=0.042 Sum_probs=166.7
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHH--HHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC
Q 044044 190 ESRIMEAAALFTKHRVFACEPDVFTYNTLING--LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG 267 (508)
Q Consensus 190 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 267 (508)
.|+-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|.... ..-..-...|.-..-+.|
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-------EtRllGLRgLyleAqr~G 168 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-------ETRLLGLRGLYLEAQRLG 168 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-------HHHHHhHHHHHHHHHhcc
Confidence 46666666666554321 12344433334332 334688888888888887631 011111222333334678
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH--hHHHHHHHH---HhcCChhH
Q 044044 268 FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-VQPDVV--TFSVIMDEL---CKNGKMDK 341 (508)
Q Consensus 268 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~---~~~~~~~~ 341 (508)
+.+.|..+-++....- +.-...+...+...+..|+|+.|+++++.-.... +.++.. .-..|+.+- .-..+...
T Consensus 169 areaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 169 AREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred cHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 8888888777776542 2235667778888888888888888887765532 233322 111222211 11234555
Q ss_pred HHHHHHHHHHcCCCCCHH-hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 342 ASRLLELMIWRGVNPNTY-TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 342 a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
|...-.+..+. .||.. .-..-..++.+.|+..++-.+++.+-+.. |.+..+. +..+.+.|+ .+..-+++..
T Consensus 248 Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gd--ta~dRlkRa~ 319 (531)
T COG3898 248 ARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGD--TALDRLKRAK 319 (531)
T ss_pred HHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCC--cHHHHHHHHH
Confidence 66655555543 55532 22334467888888888888888888874 4444332 222344443 3444444333
Q ss_pred HC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCcc
Q 044044 421 SK-GIKP-TVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKS-GFVLEALELFRAIRDSKYEL 496 (508)
Q Consensus 421 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p 496 (508)
.. .++| +......+..+-...|++..|..--+...+ ..|....|..|.+.-... |+-.++..++-+.....-.|
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 22 2333 445566677777788888888777666655 467777787777765444 88888888887777543333
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.034 Score=44.66 Aligned_cols=131 Identities=11% Similarity=0.011 Sum_probs=76.4
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCCHHHH
Q 044044 320 QPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNG---CMHDVVSY 396 (508)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~ 396 (508)
.|+...-..+..++.+.|+..+|...|.+....-..-|......+.++....+++..|...++++-+.+ -.|| ..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 455555556666677777777777777766654445556666666666666777777777776665542 1222 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 397 NTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEM 454 (508)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (508)
-.+.+.+...|.++.|..-|+.....- |+...-......+.++|+.+++..-+..+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 345566666677777777777666652 33333333344455666655554444333
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00047 Score=46.60 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=32.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHHHHHH
Q 044044 440 EIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNC 503 (508)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 503 (508)
..|++++|+++|+++.+.. +-+...+..+..+|.+.|++++|.++++++... .|+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHH
Confidence 4555666666666655542 224555555666666666666666666665532 344444433
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.052 Score=46.20 Aligned_cols=173 Identities=14% Similarity=0.050 Sum_probs=115.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH-----HH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYN-----TL 399 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-----~l 399 (508)
+.+.++..+.-.|.+.-...++++.++...+.++.....|.+.-.+.|+.+.|...|++..+..-..|....+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4456667777778888888888888887767778888888898899999999999998776653333333333 33
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 044044 400 INWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSG-- 477 (508)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 477 (508)
...|.-.+++.+|...+.+....... |+...|.-.-+..-.|+...|++.++.|.+. .|...+-++++-.++..-
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~nL~tmyEL 335 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFNLTTMYEL 335 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHHHHHHHHH
Confidence 44566677888888888888876433 5666666666777788999999999999875 445444444433332211
Q ss_pred ---CHHHHHHHHHHHHHcCCccCHHHH
Q 044044 478 ---FVLEALELFRAIRDSKYELNIVSY 501 (508)
Q Consensus 478 ---~~~~A~~~~~~m~~~g~~p~~~~~ 501 (508)
+.-+-...+.+.+. |..||...-
T Consensus 336 ~Ys~~~~~k~~l~~~ia-~~~~d~f~~ 361 (366)
T KOG2796|consen 336 EYSRSMQKKQALLEAVA-GKEGDSFNT 361 (366)
T ss_pred HhhhhhhHHHHHHHHHh-ccCCCcccc
Confidence 11222334444433 677776543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0058 Score=50.53 Aligned_cols=104 Identities=18% Similarity=0.285 Sum_probs=64.5
Q ss_pred CCCHHhHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 044044 355 NPNTYTYNTLIDGYCLT-----DKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVV 429 (508)
Q Consensus 355 ~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 429 (508)
..+..+|..+++.|.+. |..+=....+..|.+-|+..|..+|+.|++.+=+ |.+- |. .
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-N 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-c
Confidence 44778888888887653 6677777778888888888888888888887764 3211 11 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSG 477 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 477 (508)
.+.++..-| -.+-+-|++++++|...|+-||..++..++..+.+.+
T Consensus 107 ~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 107 FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 111111111 1233556666666666666666666666666665444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.038 Score=53.03 Aligned_cols=98 Identities=19% Similarity=0.209 Sum_probs=57.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYC 404 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (508)
+...+..-+.+...+.-|.++|..|-. ...+++.....++|++|..+-+...+. .+++ |......++
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dV--y~pyaqwLA 815 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDV--YMPYAQWLA 815 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccc--cchHHHHhh
Confidence 444444444555566666666666531 124556666677777777666655543 2332 333444455
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 405 KNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
...++++|.+ +|.+.|+-.+|.++++++...
T Consensus 816 E~DrFeEAqk----------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 816 ENDRFEEAQK----------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhHHHHHH----------------------HHHHhcchHHHHHHHHHhhhh
Confidence 5555555543 455678888999998888754
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0067 Score=48.46 Aligned_cols=72 Identities=22% Similarity=0.252 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCccCHHHHH
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR-----DSKYELNIVSYN 502 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~ 502 (508)
+...++..+...|++++|+++.+.+.... +.|...|..++.+|...|+..+|.+.|+++. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44567777888999999999999999873 4578899999999999999999999998885 469999887643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00085 Score=45.50 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIH-QVERALKLFDEM 454 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~ 454 (508)
.|..+...+...|++++|+..|++.++.... +...|..+..++...| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3333444444444444444444444433211 2333333444444444 344444444333
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.1 Score=47.52 Aligned_cols=79 Identities=19% Similarity=0.166 Sum_probs=36.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH
Q 044044 365 IDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQV 444 (508)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 444 (508)
+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.++... + + .+.-|...+.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k--K-sPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K--K-SPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C--C-CCCChHHHHHHHHHCCCH
Confidence 333444455544444443332 34455555555555555555544443221 1 1 223444555555555555
Q ss_pred HHHHHHHHH
Q 044044 445 ERALKLFDE 453 (508)
Q Consensus 445 ~~a~~~~~~ 453 (508)
.+|..++.+
T Consensus 254 ~eA~~yI~k 262 (319)
T PF04840_consen 254 KEASKYIPK 262 (319)
T ss_pred HHHHHHHHh
Confidence 555555444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.006 Score=50.42 Aligned_cols=116 Identities=22% Similarity=0.203 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHH
Q 044044 307 AKRLFIEMMDQGVQPDVVTFSVIMDELCKN-----GKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLF 381 (508)
Q Consensus 307 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 381 (508)
-...|+.... -..+..+|..++..+.+. |..+=....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|
T Consensus 33 ~~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~f 108 (228)
T PF06239_consen 33 HEELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFF 108 (228)
T ss_pred hHHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHH
Confidence 3444555422 245888999999998754 6677777788899999999999999999988754 3321 11111
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 044044 382 VSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQ 443 (508)
Q Consensus 382 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 443 (508)
+.+- . -.-.+-+-|++++++|...|+-||..|+..++..+++.+.
T Consensus 109 Q~~F---------------~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEF---------------M--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHh---------------c--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 1 1223457788899999999999999999999888876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.07 Score=45.43 Aligned_cols=141 Identities=9% Similarity=0.009 Sum_probs=95.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHH-----H
Q 044044 290 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNT-----L 364 (508)
Q Consensus 290 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 364 (508)
..+.++..+.-.|.+.-....+.++++...+.+......+++.-.+.|+.+.|...|++..+..-..+....+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34456666666777878888888888776566777778888888888888888888887665433333333333 2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 044044 365 IDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNT 433 (508)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 433 (508)
...|..++++..|...+.++.+.+ +.++...|.-.-+..-.|+...|++..+.|.+. .|...+-++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 344556777888888887777765 456666666555666678888888888888875 344444443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.03 Score=47.51 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=24.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHH
Q 044044 434 LFLGLFEIHQVERALKLFDEMRRNHVAAD---TYTYNNFIDGLCKSGFVLEA 482 (508)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A 482 (508)
+..-|.+.|.+..|..-++.+++. .+-+ ......++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 445566666666666666666654 1111 22344555666666665533
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00095 Score=44.60 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=20.6
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 368 YCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
+.+.|++++|...|+++++.. +.+...+..+..++...|++++|...|++++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444444444444444332 2233333444444444444444444444443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.006 Score=53.66 Aligned_cols=88 Identities=10% Similarity=0.020 Sum_probs=37.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCH
Q 044044 404 CKNKDVEEALSLYSEMLSKGIKPT--VVTYNTLFLGLFEIHQVERALKLFDEMRRNHV--AADTYTYNNFIDGLCKSGFV 479 (508)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~ 479 (508)
.+.|++++|+..|+.+++..+... ...+..+..+|...|++++|...|+.+.+... +.....+-.+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334455555555555444321110 12344444455555555555555555543210 01122233333344445555
Q ss_pred HHHHHHHHHHHH
Q 044044 480 LEALELFRAIRD 491 (508)
Q Consensus 480 ~~A~~~~~~m~~ 491 (508)
++|.++|+++++
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00095 Score=45.26 Aligned_cols=64 Identities=22% Similarity=0.201 Sum_probs=40.5
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 044044 357 NTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNK-DVEEALSLYSEMLS 421 (508)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 421 (508)
+...|..+...+...|++++|+..|.+..+.+ +.+...|..+..++...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34556666666666666666666666666654 445556666666666666 56666666666654
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.14 Score=46.41 Aligned_cols=282 Identities=12% Similarity=0.067 Sum_probs=114.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH--HHhcCCcchHHHHHHHHHhCCCCCCHHh--HHHHHHHHHhcCCHHH
Q 044044 120 NKHYDTVLSLFKRLNSAGLFPDIYTHSILINC--FCKMGRVSHGFVVLGRILRSCFTPNAVT--FTSLIKGLCAESRIME 195 (508)
Q Consensus 120 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~ 195 (508)
.|+-..|.++-.+..+. +..|...+..++.+ -.-.|+++.|.+-|+.|... |.... ...|.-.--+.|..+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 34555555544443322 23333333333322 22345555555555555431 11111 1111112224455555
Q ss_pred HHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHH--HHHHHHHH---ccCCHH
Q 044044 196 AAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTY--NTIIDGLC---KEGFVD 270 (508)
Q Consensus 196 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~---~~g~~~ 270 (508)
|..+-++....- +.-...+...+...+..|+++.|+++++.-..... +.+++.-- ..|+.+-. -..+..
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v-----ie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV-----IEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-----hchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 555554443321 11234455555555555555555555554443321 22332211 11111111 112333
Q ss_pred HHHHHHHHHhhCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 044044 271 KAKELFLKMKDENINPDVVT-YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELM 349 (508)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 349 (508)
.|...-.+..+ +.|+... -..-..++.+.|+..++-.+++.+-+....|+. + ..|.+...-|.+..-++..
T Consensus 247 ~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a----~lY~~ar~gdta~dRlkRa 318 (531)
T COG3898 247 SARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A----LLYVRARSGDTALDRLKRA 318 (531)
T ss_pred HHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H----HHHHHhcCCCcHHHHHHHH
Confidence 44443333332 2233221 112234455556666666666555554322221 1 1222222222222222222
Q ss_pred HHc-CCCC-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 044044 350 IWR-GVNP-NTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK-NKDVEEALSLYSEMLS 421 (508)
Q Consensus 350 ~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 421 (508)
.+. ..+| +......+.++-...|++..|..--+...+. .|....|-.|.+.-.. .||-.++...+.+...
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 211 1122 2344444455555555555555554444443 3444455555544332 3566666665555554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0064 Score=53.50 Aligned_cols=98 Identities=15% Similarity=0.062 Sum_probs=66.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHh
Q 044044 179 TFTSLIKGLCAESRIMEAAALFTKHRVFACEPD----VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 254 (508)
Q Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 254 (508)
.|...+..+.+.|++++|+..|+.+.... |+ ..++..+...|...|++++|...|+.+....+. .+....
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~----s~~~~d 218 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK----SPKAAD 218 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----CcchhH
Confidence 35554544456688888888888877663 33 246667788888888888888888888765421 122344
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 255 TYNTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
.+..++.++...|+.++|.++|+++.+.
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5555666777788888888888877765
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.07 Score=45.60 Aligned_cols=76 Identities=18% Similarity=0.134 Sum_probs=47.1
Q ss_pred CCCCCCCCChHHHHHHHHHhHHcCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 78 GQGDINLITPNEALCIFDYMLRMHPSPP-PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFC 153 (508)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (508)
|+..+..|++++|...|+.+...+|..| ...+.-.++.++.+.++++.|+..+++..+....-...-|...|.+++
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 3444566788888888888888877632 223444555666778888888888888766532222233444444444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.037 Score=48.11 Aligned_cols=149 Identities=13% Similarity=-0.007 Sum_probs=105.0
Q ss_pred CCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 044044 78 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGR 157 (508)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 157 (508)
+...+..|++.+|...|..++...|. +...--.++.+|...|+.+.|..++..+...--.........-|..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~--~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE--NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 44567788999999999999999888 7788888999999999999999999998754212222222234555666666
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcC-CCCCHhhHHHHHHHHHhcCChHH
Q 044044 158 VSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFA-CEPDVFTYNTLINGLCRTGHTIV 230 (508)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 230 (508)
..+...+-.+.-.. +.|...-..+...+...|+.++|.+.+-.+...+ -..|...-..++..+.-.|.-+.
T Consensus 219 ~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 219 TPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 66666666665443 4477777788888999999999998776665542 12345566667776666664333
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.18 Score=46.46 Aligned_cols=165 Identities=16% Similarity=0.071 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHhHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHhHHHH
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQG---VQPDVVTFSVIMDELCK---NGKMDKASRLLELMIWRGVNPNTYTYNTL 364 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 364 (508)
...++-+|....+|+..+++++.+.... +.-....-....-++.+ .|+.++|++++..+......++..+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3345556888888888888888887642 11122222233445666 78888888888886666667778888887
Q ss_pred HHHHHc---------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHH---HHHH-HCC---C
Q 044044 365 IDGYCL---------TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDV----EEALSLY---SEML-SKG---I 424 (508)
Q Consensus 365 ~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~---~~~~-~~~---~ 424 (508)
.+.|-. ....++|...|.+.-+.. ++..+--.++..+...|.- .+..++- ..+. ++| .
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 766532 123566777776655542 3332222222223333321 1222222 1111 222 1
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 425 KPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 425 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
..+-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 223344456666777777777777777777764
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.25 Score=45.71 Aligned_cols=395 Identities=15% Similarity=0.133 Sum_probs=206.7
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHH--HhcCChhHHHHHHHHHHhC--CCCC------------CHHhHHHHH
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCL--AKNKHYDTVLSLFKRLNSA--GLFP------------DIYTHSILI 149 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~l~ 149 (508)
+.+.-........+..|. ..|-.+..++ .+.+.+++|++.+.....+ +..+ |...-+..+
T Consensus 60 nld~Me~~l~~l~~~~~~----s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a 135 (549)
T PF07079_consen 60 NLDLMEKQLMELRQQFGK----SAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEA 135 (549)
T ss_pred hHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHH
Confidence 333333344444444432 2344444433 4788899999988877654 2222 222335566
Q ss_pred HHHHhcCCcchHHHHHHHHHhC----CCCCCHHhHHHHHHHHHhcC--------C-------HHHHHHHHHHhhhcC---
Q 044044 150 NCFCKMGRVSHGFVVLGRILRS----CFTPNAVTFTSLIKGLCAES--------R-------IMEAAALFTKHRVFA--- 207 (508)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g--------~-------~~~A~~~~~~~~~~~--- 207 (508)
.++.+.|++.++..+++++... ....+..+|+.++-++.+.= . ++.+.-+..++....
T Consensus 136 ~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~ 215 (549)
T PF07079_consen 136 HSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRP 215 (549)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhch
Confidence 7888999999999888887653 44578888888666554421 1 111222222222111
Q ss_pred ---CCCCHhhHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCCCccccCCHh-HHHHHHHHHHccCCHHHHHHHHHHHhh
Q 044044 208 ---CEPDVFTYNTLINGLCR--TGHTIVALNLFEEMANGNGEFGVVCKPNTV-TYNTIIDGLCKEGFVDKAKELFLKMKD 281 (508)
Q Consensus 208 ---~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (508)
+.|.......++....- ..+..--.++++...... +.|+-. ....+..-+.. +.+++..+-+.+..
T Consensus 216 Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~y------v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~ 287 (549)
T PF07079_consen 216 YEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFY------VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIAS 287 (549)
T ss_pred HHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhc------cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHH
Confidence 12222222222222221 112222233333333333 344432 22333333333 45555555444433
Q ss_pred CCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh-------HHHHHHHHH-hcC---ChhHHHHHH
Q 044044 282 ENIN----PDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVT-------FSVIMDELC-KNG---KMDKASRLL 346 (508)
Q Consensus 282 ~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~-~~~---~~~~a~~~~ 346 (508)
..+. .-..++..++....+.++...|.+.+.-+... .|+... -..+.+..+ ... +...-+.++
T Consensus 288 ~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lw 365 (549)
T PF07079_consen 288 SKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLW 365 (549)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 2111 12456888888888999999998888777654 233221 111222222 111 122334455
Q ss_pred HHHHHcCCCCCHHhHHHHH---HHHHcCCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHh---cCCHHHHHHH
Q 044044 347 ELMIWRGVNPNTYTYNTLI---DGYCLTDK-IDHARKLFVSMESNGCMHDVVSYNTLIN----WYCK---NKDVEEALSL 415 (508)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~---~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~~A~~~ 415 (508)
+.....++. .......|+ .-+.+.|. -++|..+++.+.+-. +.|..+-|.+.. .|.+ ...+..-+.+
T Consensus 366 e~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkL 443 (549)
T PF07079_consen 366 EEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKL 443 (549)
T ss_pred HHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 555544332 112222222 33445555 788999998888753 345544443322 2211 1223333333
Q ss_pred HHHHHHCCCCCCH----hHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 416 YSEMLSKGIKPTV----VTYNTLFL--GLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 416 ~~~~~~~~~~p~~----~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
-+-+.+.|+.|-. ..-|.|.+ -+..+|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|..++.++
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3334455766532 23344433 35578888888766555555 6789999999999999999999999998765
Q ss_pred HHcCCccCHHHHHH
Q 044044 490 RDSKYELNIVSYNC 503 (508)
Q Consensus 490 ~~~g~~p~~~~~~~ 503 (508)
.|+..++++
T Consensus 522 -----P~n~~~~ds 530 (549)
T PF07079_consen 522 -----PPNERMRDS 530 (549)
T ss_pred -----CCchhhHHH
Confidence 566666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00096 Score=46.57 Aligned_cols=69 Identities=23% Similarity=0.274 Sum_probs=50.5
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC-HhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 044044 212 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN-TVTYNTIIDGLCKEGFVDKAKELFLKMKD 281 (508)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (508)
..+|+.+...|...|++++|++.|++........|. ..|+ ..++..+..++...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346788888888999999999988887754211111 1233 56788899999999999999999988754
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.025 Score=44.82 Aligned_cols=90 Identities=11% Similarity=0.026 Sum_probs=69.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 044044 366 DGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVE 445 (508)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 445 (508)
.-+...|++++|..+|+-+...+ +.+..-|..|..++-..+++++|+..|......+. -|+..+.....++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 34556889999999988877765 45677778888888888999999999887776543 25555667788888999999
Q ss_pred HHHHHHHHHHHC
Q 044044 446 RALKLFDEMRRN 457 (508)
Q Consensus 446 ~a~~~~~~~~~~ 457 (508)
.|...|+...+.
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 999988888763
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.35 Score=48.34 Aligned_cols=46 Identities=13% Similarity=0.225 Sum_probs=25.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044044 434 LFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEAL 483 (508)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 483 (508)
++..+.+..+++.+..+.+..-+. ++..|..++..+.+.+..+.-.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~ 756 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCY 756 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHH
Confidence 444455555666655555544332 5566666666666666444333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0031 Score=43.29 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=43.5
Q ss_pred CCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 044044 81 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSA 136 (508)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 136 (508)
++..++++.|+++++.++..+|. +...|.....++.+.|++++|.+.|+...+.
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD--DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc--cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44567888888888888888877 7778888888888888888888888888775
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.017 Score=46.05 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhh-----CCCCCCh
Q 044044 214 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKD-----ENINPDV 288 (508)
Q Consensus 214 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~ 288 (508)
+...++..+...|++++|+.+++.+...+ |-+...|..+|.++...|+..+|.+.|+++.+ .|+.|+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 34456666677778888888888777764 45677777788888888888888777777643 2666665
Q ss_pred hh
Q 044044 289 VT 290 (508)
Q Consensus 289 ~~ 290 (508)
.+
T Consensus 137 ~~ 138 (146)
T PF03704_consen 137 ET 138 (146)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0074 Score=41.33 Aligned_cols=55 Identities=15% Similarity=0.027 Sum_probs=27.6
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 367 GYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
.|.+.+++++|.++++.+.+.+ +.++..|.....++...|++++|.+.|++..+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444555555555555555443 334444444555555555555555555555543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0033 Score=43.79 Aligned_cols=60 Identities=28% Similarity=0.412 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CC-HhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEMLSK----GIK-PT-VVTYNTLFLGLFEIHQVERALKLFDEM 454 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (508)
+|+.+...|...|++++|+..|++.++. |.. |+ ..++..+..++...|++++|++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444555555555555555444422 100 11 223444444444444444444444443
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0049 Score=48.73 Aligned_cols=85 Identities=12% Similarity=-0.005 Sum_probs=38.2
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
..|++++|..+|.-+...++. +..-|..|..++...+++++|+..|......+ .-|....-....++...|+.+.|.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 344455555555444444443 44444444444444455555555544443332 123333334444444444444444
Q ss_pred HHHHHHHh
Q 044044 163 VVLGRILR 170 (508)
Q Consensus 163 ~~~~~~~~ 170 (508)
..|+.+..
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 44444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.13 Score=49.69 Aligned_cols=84 Identities=15% Similarity=0.107 Sum_probs=56.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 044044 287 DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLID 366 (508)
Q Consensus 287 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 366 (508)
+..+...+..-+.+...+.-|-++|..|-+. ..++......+++++|..+-+...+. .|| +|..-.+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHH
Confidence 3445555555566667788888898877542 35677888999999999988776543 333 3445556
Q ss_pred HHHcCCCHHHHHHHHHH
Q 044044 367 GYCLTDKIDHARKLFVS 383 (508)
Q Consensus 367 ~~~~~g~~~~A~~~~~~ 383 (508)
.++...++++|.+.|.+
T Consensus 813 wLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFHK 829 (1081)
T ss_pred HhhhhhhHHHHHHHHHH
Confidence 66667777777655543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.066 Score=45.06 Aligned_cols=168 Identities=12% Similarity=0.088 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 123 YDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTK 202 (508)
Q Consensus 123 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (508)
++.|.-+.+++.+. .--+..|+.....|.+.|..+.|-..+++.-+. ....+.++|+++|++
T Consensus 74 yEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqr 135 (308)
T KOG1585|consen 74 YEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQR 135 (308)
T ss_pred HHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHH
Confidence 34444444444432 122333445555666666666666666554331 122444555555554
Q ss_pred hhhcCC--CC---CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC-HhHHHHHHHHHHccCCHHHHHHHH
Q 044044 203 HRVFAC--EP---DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN-TVTYNTIIDGLCKEGFVDKAKELF 276 (508)
Q Consensus 203 ~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 276 (508)
....-. .. -...+......+.+...+++|-..+.+-........ .-++ -..|...|-.+....++..|.+.+
T Consensus 136 alavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~ 213 (308)
T KOG1585|consen 136 ALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD--AYNSQCKAYVAAILVYLYAHDYVQAEKCY 213 (308)
T ss_pred HHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh--hcccHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 322100 11 122334444555666666665554433221100000 0011 122344444555556777777777
Q ss_pred HHHhhC---CCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 044044 277 LKMKDE---NINPDVVTYTSVIRGFCYANDWNEAKRLF 311 (508)
Q Consensus 277 ~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 311 (508)
+.-.+. .-+-+..+...|+.+| ..|+.+++..++
T Consensus 214 r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 214 RDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred cchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 664332 1122445566666654 456666555443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.41 Score=44.13 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=15.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044044 371 TDKIDHARKLFVSMESNGCMHDVVSYNTLINWY 403 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (508)
.|+.++|.+++..+......++..+|..++..|
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 455555555554433333344444554444443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.57 Score=45.19 Aligned_cols=376 Identities=11% Similarity=0.028 Sum_probs=221.4
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH-hcCCcchHHHH
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFC-KMGRVSHGFVV 164 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~ 164 (508)
+.+.+..+++.++...|. --..|......-.+.|..+.+.++|++.+. |++.+...|...+.-+. ..|+.+.....
T Consensus 60 ~~~~~r~~y~~fL~kyPl--~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~ 136 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPL--CYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDL 136 (577)
T ss_pred HHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 447788889999888876 666788888888899999999999999987 57778888887775554 45677777788
Q ss_pred HHHHHhC-CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHH---hc------CChHHHHH
Q 044044 165 LGRILRS-CFT-PNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLC---RT------GHTIVALN 233 (508)
Q Consensus 165 ~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~------g~~~~A~~ 233 (508)
|+.+... |.. .+...|...|..-..++++.....+|+++++. ...-++..-.-|. +. ...+++.+
T Consensus 137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~ 212 (577)
T KOG1258|consen 137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQ 212 (577)
T ss_pred HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHH
Confidence 8887653 322 34567888888888889999999999998864 2222332222221 11 23344443
Q ss_pred HHHHHHhC-CCCCCccccCCHhHHH------------------HHHH-------HHHccCCHHHHHHHHHHHhhC---CC
Q 044044 234 LFEEMANG-NGEFGVVCKPNTVTYN------------------TIID-------GLCKEGFVDKAKELFLKMKDE---NI 284 (508)
Q Consensus 234 ~~~~~~~~-~~~~~~~~~~~~~~~~------------------~l~~-------~~~~~g~~~~a~~~~~~~~~~---~~ 284 (508)
+-...... ...+ ..+....+. .+.. ++-......+....|+.-.+. .+
T Consensus 213 l~~~~~~~~~~~~---~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhv 289 (577)
T KOG1258|consen 213 LRSDVAERSKITH---SQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHV 289 (577)
T ss_pred HhhhHHhhhhccc---ccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcccccccc
Confidence 33333221 0000 000111111 1111 111111222222223332222 11
Q ss_pred C----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCH
Q 044044 285 N----PDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVN--PNT 358 (508)
Q Consensus 285 ~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~ 358 (508)
. ++..+|..-+.--...|+++.+.-+|+...-- +..-...|-..+.-....|+.+-+..++....+-.++ |..
T Consensus 290 kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i 368 (577)
T KOG1258|consen 290 KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPII 368 (577)
T ss_pred CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHH
Confidence 1 23456777777777888888888888877542 1111223444444444558888888777766654333 223
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCHhHHHHH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDV-VSYNTLINWYCKNKDVEEAL---SLYSEMLSKGIKPTVVTYNTL 434 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~l 434 (508)
....+.+ .-..|+++.|..+++.+.+.- |+. ..-..-+....+.|+.+.+. .++...... +-+..+...+
T Consensus 369 ~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l 442 (577)
T KOG1258|consen 369 HLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKL 442 (577)
T ss_pred HHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHH
Confidence 3333322 334679999999999988763 433 22233345566778888777 333333322 1233333333
Q ss_pred HHH-----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044044 435 FLG-----LFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFV 479 (508)
Q Consensus 435 ~~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 479 (508)
.-- +.-.++.+.|..++.++.+. .+++...|..+++.....+-.
T Consensus 443 ~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 443 YVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCcc
Confidence 322 33467888999999988886 677888888888877776643
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.15 Score=38.43 Aligned_cols=139 Identities=15% Similarity=0.184 Sum_probs=67.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044044 335 KNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALS 414 (508)
Q Consensus 335 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 414 (508)
-.|..+++.++..+...+. +..-+|.+|--....-+-+-..++++.+-+ ..|. ...|+......
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHHHH
Confidence 3566667777766666542 444455555333333333333333333322 1121 12233333333
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044044 415 LYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKY 494 (508)
Q Consensus 415 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 494 (508)
.+-.+- -+...++..+..+..+|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++++..++|+
T Consensus 78 C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 332211 13334455566677777777777777777653 355677777777788888888888888887777775
Q ss_pred c
Q 044044 495 E 495 (508)
Q Consensus 495 ~ 495 (508)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.02 Score=53.21 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=42.9
Q ss_pred cCCCCCCCCChHHHHHHHHHhHHcCCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 044044 77 SGQGDINLITPNEALCIFDYMLRMHPSPPPV---SSFNILFGCLAKNKHYDTVLSLFKRLNSA 136 (508)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 136 (508)
.|..+...|++++|+..|+++++.+|. +. .+|..+..+|...|++++|++.++++.+.
T Consensus 81 LG~AL~~lGryeEAIa~f~rALeL~Pd--~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 81 LGLSLFSKGRVKDALAQFETALELNPN--PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555667888888888888887776 43 35777888888888888888888887764
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.15 Score=49.39 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=91.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH------hHHHHHHHHH----cCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044044 328 VIMDELCKNGKMDKASRLLELMIWRGVNPNTY------TYNTLIDGYC----LTDKIDHARKLFVSMESNGCMHDVVSYN 397 (508)
Q Consensus 328 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (508)
.+++...=.|+-+.+++.+....+.+---.+. .|...+..++ ...+.+.|.++++.+.+. .|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 34444444556666666665554432111111 1222222222 245677788888888776 45555554
Q ss_pred H-HHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-H
Q 044044 398 T-LINWYCKNKDVEEALSLYSEMLSKG---IKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFID-G 472 (508)
Q Consensus 398 ~-l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~ 472 (508)
. -.+.+...|++++|++.|++..... .......+.-++.++...+++++|.+.|..+.+.+ .....+|.-+.. +
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 3 3456677788888888888665421 11234455667777788888888888888888753 223444443332 3
Q ss_pred HHhcCCH-------HHHHHHHHHHH
Q 044044 473 LCKSGFV-------LEALELFRAIR 490 (508)
Q Consensus 473 ~~~~g~~-------~~A~~~~~~m~ 490 (508)
+...|+. ++|.++|.+..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 4566766 77777777765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.21 Score=41.37 Aligned_cols=195 Identities=16% Similarity=0.029 Sum_probs=111.5
Q ss_pred hccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 044044 75 KSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCK 154 (508)
Q Consensus 75 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (508)
-..|.-|-+.|-..-|+--|.+.+...|. -+..||.+.-.+...|+++.|.+.|+...+....-+-...|.-| ++--
T Consensus 69 fERGvlYDSlGL~~LAR~DftQaLai~P~--m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY 145 (297)
T COG4785 69 FERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYY 145 (297)
T ss_pred HHhcchhhhhhHHHHHhhhhhhhhhcCCC--cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeee
Confidence 34566677778888899999999988887 67789999999999999999999999998864222222223222 2335
Q ss_pred cCCcchHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHH-HHhhhcCCCCCHhhHHHHHHHHH-hcCChHHH
Q 044044 155 MGRVSHGFVVLGRILRSCF-TPNAVTFTSLIKGLCAESRIMEAAALF-TKHRVFACEPDVFTYNTLINGLC-RTGHTIVA 231 (508)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 231 (508)
.|+++-|.+-+...-+... .|-...|--+.. ..-+..+|..-+ ++... .|..-|...+-.|. ..=..+
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e-- 216 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEE-- 216 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHH--
Confidence 6788888877766655421 222223333322 334556666544 33332 24344443333322 111122
Q ss_pred HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 232 LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
.+++.+..........-..=..+|.-+..-+...|+.++|..+|.-....
T Consensus 217 -~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 217 -TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred -HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 22333322110000000011346666777777788888888888776554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.71 Score=44.55 Aligned_cols=347 Identities=15% Similarity=0.045 Sum_probs=205.5
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHH-hcCChhHHHHHHHHHHhC-CC-CCCHHhHHHHHHHHHhcCCcc
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLA-KNKHYDTVLSLFKRLNSA-GL-FPDIYTHSILINCFCKMGRVS 159 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~ 159 (508)
..|..+.+.++|++.++.-|. ++..|...+..+. ..|+.+....+|+.+... |. -.+...|...|.--..++++.
T Consensus 91 klg~~~~s~~Vfergv~aip~--SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQAIPL--SVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HhhhHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 457889999999999998876 8888887776554 567888888999988764 21 134556888888778888999
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHH---Hhc------CCHHHHHHHHHHhhhc---C-CCCCHhhHHHHHH------
Q 044044 160 HGFVVLGRILRSCFTPNAVTFTSLIKGL---CAE------SRIMEAAALFTKHRVF---A-CEPDVFTYNTLIN------ 220 (508)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~------g~~~~A~~~~~~~~~~---~-~~~~~~~~~~l~~------ 220 (508)
....++++.++.. ...++....-| .+. -..+++.++-...... . .......+..-+.
T Consensus 169 ~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s 244 (577)
T KOG1258|consen 169 RVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPS 244 (577)
T ss_pred HHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCcc
Confidence 9999999988642 12222222111 111 1223333222221110 0 0001111111111
Q ss_pred -------------------HHHhcCChHHHHHHHHHHHhCCCCC--CccccCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 044044 221 -------------------GLCRTGHTIVALNLFEEMANGNGEF--GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKM 279 (508)
Q Consensus 221 -------------------~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 279 (508)
.+.......+..-.|+.-..+. .+ .+..+++..+|...+..-.+.|+++.+.-+|++.
T Consensus 245 ~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ikrp-Yfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~erc 323 (577)
T KOG1258|consen 245 KSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRP-YFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERC 323 (577)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcccc-ccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHH
Confidence 1111112222222333322221 00 0112445678999999999999999999999998
Q ss_pred hhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-H
Q 044044 280 KDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPN-T 358 (508)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 358 (508)
.-. +..=...|-..+.-....|+.+-|..++....+-..+-...+--.-....-..|+++.|..+++.+...- |+ .
T Consensus 324 li~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v 400 (577)
T KOG1258|consen 324 LIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLV 400 (577)
T ss_pred HhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--Cchh
Confidence 642 1112234444455555569999999888877665444333333333334455789999999999998773 44 3
Q ss_pred HhHHHHHHHHHcCCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 044044 359 YTYNTLIDGYCLTDKIDHAR---KLFVSMESNGCMHDVVSYNTLIN-----WYCKNKDVEEALSLYSEMLSKGIKPTVVT 430 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 430 (508)
..-..-+....+.|+.+.+. +++...... .-+......+.- .+.-.++.+.|..++.++.+. .+++...
T Consensus 401 ~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~ 477 (577)
T KOG1258|consen 401 EVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVL 477 (577)
T ss_pred hhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHH
Confidence 33333445667788888888 444443332 222223333322 234568899999999999987 5567777
Q ss_pred HHHHHHHHHhcC
Q 044044 431 YNTLFLGLFEIH 442 (508)
Q Consensus 431 ~~~l~~~~~~~g 442 (508)
|..++..+...+
T Consensus 478 ~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 478 YLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHhCC
Confidence 877777766555
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.16 Score=47.56 Aligned_cols=148 Identities=12% Similarity=0.074 Sum_probs=96.8
Q ss_pred ChHHHHHHHHHhH---HcCCCCCCcccHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 86 TPNEALCIFDYML---RMHPSPPPVSSFNILFGCLAK---------NKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFC 153 (508)
Q Consensus 86 ~~~~A~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (508)
+.+.|+.+|++++ ..+|. ...+|..+..++.. .....+|.++.++..+.+ +.|......+..+..
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~--~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTL--KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcc--cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3567888999998 55554 45566665555442 223456777788888776 567888888888777
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-HhhHHHHHHHHHhcCChHHHH
Q 044044 154 KMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPD-VFTYNTLINGLCRTGHTIVAL 232 (508)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 232 (508)
-.++++.|..+|++....+ +....+|........-.|+.++|.+.+++........- .......++.|+. ...+.|+
T Consensus 350 ~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~ 427 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNI 427 (458)
T ss_pred hhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhH
Confidence 7888899999999888764 23445555555556667889999998888666532211 2223333445554 3456777
Q ss_pred HHHHHH
Q 044044 233 NLFEEM 238 (508)
Q Consensus 233 ~~~~~~ 238 (508)
++|-+-
T Consensus 428 ~~~~~~ 433 (458)
T PRK11906 428 KLYYKE 433 (458)
T ss_pred HHHhhc
Confidence 766543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.065 Score=47.30 Aligned_cols=154 Identities=11% Similarity=-0.032 Sum_probs=113.4
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH--hH--HHHHHHHHhcCC
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIY--TH--SILINCFCKMGR 157 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~--~~l~~~~~~~g~ 157 (508)
.-.|+..+|-...+++++..|. +..+++..=.++.-.|+...-...++++... -.+|.. +| ..+.-++...|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d~Pt--Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPT--DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHhCch--hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 4567888999999999999998 8889988889999999999999999998765 133332 22 333345568899
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC---HhhHHHHHHHHHhcCChHHHHHH
Q 044044 158 VSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPD---VFTYNTLINGLCRTGHTIVALNL 234 (508)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~ 234 (508)
+++|.+.-++..+.+ +-|...-.++...+-..|++.++.+...+-...=-..+ ..-|-...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999999988765 45677777888888888999999998876433210000 11233334456677999999999
Q ss_pred HHHHH
Q 044044 235 FEEMA 239 (508)
Q Consensus 235 ~~~~~ 239 (508)
|+.-.
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 97643
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.074 Score=50.74 Aligned_cols=157 Identities=12% Similarity=0.087 Sum_probs=97.9
Q ss_pred HHHHhcCChhHHHHHHH--HHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 044044 115 GCLAKNKHYDTVLSLFK--RLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR 192 (508)
Q Consensus 115 ~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (508)
....-.|+++++.++.+ ++.. .+ +....+.++.-+.+.|..+.|+++..+-. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 33445778888777765 2221 11 24457778888888888888887754321 12344556788
Q ss_pred HHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHH
Q 044044 193 IMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKA 272 (508)
Q Consensus 193 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 272 (508)
++.|.++.++. .+...|..|.....++|+++.|.+.|.+.. -+..|+-.|.-.|+.+..
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------------d~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------------DFSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------------HHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------------CccccHHHHHHhCCHHHH
Confidence 88888776543 366788888888888888888888888753 355677777788888877
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 273 KELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIE 313 (508)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 313 (508)
.++.+.....| -++....++.-.|+.++..+++.+
T Consensus 393 ~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 393 SKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777776654 255556666677888887777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.058 Score=50.29 Aligned_cols=64 Identities=9% Similarity=-0.014 Sum_probs=42.2
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 357 NTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHD-V---VSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
+...++.+..+|.+.|++++|...|++.++.+ |+ . .+|..+..+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35566666777777777777777777766653 33 2 24666777777777777777777777664
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.054 Score=41.49 Aligned_cols=86 Identities=13% Similarity=0.072 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 392 DVVSYNTLINWYCKNKDVEEALSLYSEMLSK---------------GIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 392 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
|..++..++.++++.|+.+....+++..=.- ...|+..+..+++.+|+..|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567888899999999999888888765321 2346777888888888888888888888887775
Q ss_pred C-CCCCCHHHHHHHHHHHHhcC
Q 044044 457 N-HVAADTYTYNNFIDGLCKSG 477 (508)
Q Consensus 457 ~-~~~~~~~~~~~li~~~~~~g 477 (508)
. +++.+..+|..|+.-....-
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhc
Confidence 4 67777788888877554433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.47 Score=44.61 Aligned_cols=147 Identities=11% Similarity=0.038 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHHHc-CCCCC-HHhHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044044 339 MDKASRLLELMIWR-GVNPN-TYTYNTLIDGYCL---------TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNK 407 (508)
Q Consensus 339 ~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 407 (508)
.+.|..+|.+.+.. ...|+ ...|..+..++.. ..+..+|.++-++..+.+ +.|......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 34566666666621 12333 3344333332221 223456666666676665 567777777777667777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 044044 408 DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAA-DTYTYNNFIDGLCKSGFVLEALELF 486 (508)
Q Consensus 408 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 486 (508)
+++.|...|++....++. ...+|......+...|+.++|.+.+++..+....- -.......++.|+..+ .++|+++|
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 777777777777775322 34456666666667777777777777766542111 1223333444555543 46666665
Q ss_pred HH
Q 044044 487 RA 488 (508)
Q Consensus 487 ~~ 488 (508)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 43
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.063 Score=46.32 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHH
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEMLSKGIK--PTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH-VAA-DTYTYNNFI 470 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~li 470 (508)
.|+.-+. +.+.|++.+|...|...++..+. -....+..|..++...|+++.|..+|..+.+.- -.| -+..+-.|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555444 34556677777777777766321 123345667777777777777777777776541 111 234555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 044044 471 DGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 471 ~~~~~~g~~~~A~~~~~~m~~ 491 (508)
....+.|+.++|...|+++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 677777777777777777765
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.3 Score=47.40 Aligned_cols=162 Identities=17% Similarity=0.162 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHh
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDV------VTFSVIMDELCK----NGKMDKASRLLELMIWRGVNPNTYT 360 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 360 (508)
+..+++...-.|+-+.+++.+.+..+.+-.-.. -.|..++..++. ..+.+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 445566666667777777777665553211111 123333332222 34566777777777765 445444
Q ss_pred HHHH-HHHHHcCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH-
Q 044044 361 YNTL-IDGYCLTDKIDHARKLFVSMESNG---CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLF- 435 (508)
Q Consensus 361 ~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~- 435 (508)
|... .+.+...|++++|.+.|++..... .+.....+--++..+.-..+|++|.+.|.++.+..-. +..+|..+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence 4333 355666777777777777654311 0112233444556666777788888888777775322 333333332
Q ss_pred HHHHhcCCH-------HHHHHHHHHHH
Q 044044 436 LGLFEIHQV-------ERALKLFDEMR 455 (508)
Q Consensus 436 ~~~~~~g~~-------~~a~~~~~~~~ 455 (508)
.++...|+. ++|.++|.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 333455665 67777766553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.29 Score=42.87 Aligned_cols=124 Identities=17% Similarity=0.143 Sum_probs=58.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 044044 116 CLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIME 195 (508)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 195 (508)
.....|++.+|..+|....... +-+...-..+..+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3445666666666666665542 223344455556666666666666666655332111111111122233333333333
Q ss_pred HHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 196 AAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 196 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
...+-.+.... +-|...-..+...+...|+.++|++.+-.+..++
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33333322221 2244555555556666666666666555555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.11 Score=47.46 Aligned_cols=95 Identities=13% Similarity=0.019 Sum_probs=58.9
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVV-TYNTLFLG 437 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~ 437 (508)
.+++.+..+|.+.+++.+|++..++.++.+ ++|+...-.-..++...|+++.|+..|+++++. .|+.. +-+.|+.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 345556667777777777777777777765 566666666777777777778888777777775 33333 33333333
Q ss_pred HHhcCCH-HHHHHHHHHHHH
Q 044044 438 LFEIHQV-ERALKLFDEMRR 456 (508)
Q Consensus 438 ~~~~g~~-~~a~~~~~~~~~ 456 (508)
-.+.... +...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 3333332 333556666653
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.37 Score=38.04 Aligned_cols=126 Identities=17% Similarity=0.168 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044044 326 FSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK 405 (508)
Q Consensus 326 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (508)
...++..+...+.......+++.+...+. .+....+.++..|++.+ ..+..+.+.. . .+......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 34556666666777777777777776653 45666777777776543 2333333331 1 122223345666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044044 406 NKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI-HQVERALKLFDEMRRNHVAADTYTYNNFIDGLC 474 (508)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 474 (508)
.+-++++.-++.++-. . ...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~-----~----~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN-----F----KDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC-----H----HHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 6666666666655422 1 1122222223 5666666665531 24555666655543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.94 Score=40.68 Aligned_cols=224 Identities=15% Similarity=0.147 Sum_probs=128.7
Q ss_pred HHccCCHHHHHHHHHHHhhCC--CCCCh------hhHHHHHHHHHhcC-CHHHHHHHHHHHHHc--------CCCCCH--
Q 044044 263 LCKEGFVDKAKELFLKMKDEN--INPDV------VTYTSVIRGFCYAN-DWNEAKRLFIEMMDQ--------GVQPDV-- 323 (508)
Q Consensus 263 ~~~~g~~~~a~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~--------~~~~~~-- 323 (508)
..+.|+.+.|..++.++.... ..|+. ..|+.-.. ....+ +++.|..++++..+. ...++.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 356899999999999987642 22321 12333333 33455 888888887765543 122332
Q ss_pred ---HhHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044044 324 ---VTFSVIMDELCKNGKMD---KASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYN 397 (508)
Q Consensus 324 ---~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (508)
.++..++.+|...+..+ +|..+++.+.... ...+.++..-++.+.+.++.+.+.+.+.+|...- ......+.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~ 159 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHH
Confidence 36677788888877655 5666666665442 2235566566777777899999999999998863 21334455
Q ss_pred HHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHh-HHHH-HH---HHHHhcCC------HHHHHHHHHHHHHC-CCCCC
Q 044044 398 TLINWY---CKNKDVEEALSLYSEMLSKGIKPTVV-TYNT-LF---LGLFEIHQ------VERALKLFDEMRRN-HVAAD 462 (508)
Q Consensus 398 ~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~-l~---~~~~~~g~------~~~a~~~~~~~~~~-~~~~~ 462 (508)
.++..+ ... ....|...+..++...+.|... .... ++ ......++ ++...+++....+. +.+.+
T Consensus 160 ~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 160 SILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 555444 333 3456667776666554554443 1111 11 11122111 44455555543322 33334
Q ss_pred HHHHHHH-------HHHHHhcCCHHHHHHHHHHHH
Q 044044 463 TYTYNNF-------IDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 463 ~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~ 490 (508)
..+-.++ ...+.+.+++++|.++|+-..
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 4332222 233567899999999998544
|
It is also involved in sporulation []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.13 Score=39.48 Aligned_cols=86 Identities=12% Similarity=0.003 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------CCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC-
Q 044044 213 FTYNTLINGLCRTGHTIVALNLFEEMANGNG---------EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE- 282 (508)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 282 (508)
.++..++.++++.|+.+....+++..-..+. ..+-...|+..+..+++.+|+..|++..|.++.+...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 3444455555555555555554443322210 001114566666666666666666666666666665443
Q ss_pred CCCCChhhHHHHHHHH
Q 044044 283 NINPDVVTYTSVIRGF 298 (508)
Q Consensus 283 ~~~~~~~~~~~l~~~~ 298 (508)
+++.+...|..|++-.
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4444555566655533
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.23 Score=47.54 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=71.9
Q ss_pred HHccCCHHHHHHHHH--HHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChh
Q 044044 263 LCKEGFVDKAKELFL--KMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMD 340 (508)
Q Consensus 263 ~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 340 (508)
..-.++++++.++.. ++.. .+ +....+.++..+.+.|..+.|+++... .. .-.....+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHH
Confidence 344566666655554 1111 11 233455556656666666666655322 11 1233445566666
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 341 KASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
.|.++.+. ..+...|..|.....+.|+++-|++.|.+... |..|+-.|.-.|+.+.-.++.+...
T Consensus 336 ~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 66554332 12455666666666666666666666655431 3445555556666655555555555
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 044044 421 SKGIKPTVVTYNTLFLGLFEIHQVERALKLFD 452 (508)
Q Consensus 421 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 452 (508)
..|- ++..+.++...|+.++..+++.
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 4431 2344444455566666555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.29 Score=43.91 Aligned_cols=169 Identities=12% Similarity=0.031 Sum_probs=92.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC-----CCCCh
Q 044044 214 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDEN-----INPDV 288 (508)
Q Consensus 214 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~ 288 (508)
.|..+.+++-+.-++.+++.+-+.-....+.-.. ..--.....+..++...+.++++++.|+...+-- .....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~--~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG--QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc--cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 4555566666666666666666655544321100 0011233345566666677788888777765431 11123
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHH-----hHHHHHHHHHhcCChhHHHHHHHHHHH----cCCC
Q 044044 289 VTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQPDVV-----TFSVIMDELCKNGKMDKASRLLELMIW----RGVN 355 (508)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~ 355 (508)
.++..|-..|.+..++++|.-...+..+. ++..-.. ....+.-++...|+...|.+.-++..+ .|-.
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 45677777777778877776665554332 2111111 222334456667777777766665543 3322
Q ss_pred CC-HHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 044044 356 PN-TYTYNTLIDGYCLTDKIDHARKLFVSM 384 (508)
Q Consensus 356 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (508)
+. ......+.+.|...|+.+.|..-|++.
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 21 334556667788888888877766654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.097 Score=39.35 Aligned_cols=89 Identities=11% Similarity=-0.024 Sum_probs=70.1
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---hHHHHHHHHHhcCCc
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIY---THSILINCFCKMGRV 158 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~ 158 (508)
...|+.+.|++.|.+.+..-|. ...+||.-..++.-+|+.++|++=+++..+..-..... .|..-...|...|+-
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPE--RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HhccchHHHHHHHHHHHHhccc--chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 3557999999999999999888 78899999999999999999999999987753222222 333444556778888
Q ss_pred chHHHHHHHHHhCC
Q 044044 159 SHGFVVLGRILRSC 172 (508)
Q Consensus 159 ~~a~~~~~~~~~~~ 172 (508)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 88888888887766
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.92 Score=39.03 Aligned_cols=75 Identities=13% Similarity=0.091 Sum_probs=42.9
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 044044 221 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFC 299 (508)
Q Consensus 221 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 299 (508)
.-.+.|++++|.+.|+.+....+. .+-...+...++.++.+.+++++|...+++..+.-.......|..-|.+.+
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~----s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPF----SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCC----CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 345677777777777777765431 122244555566667777777777777777665422222233444444443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.2 Score=45.77 Aligned_cols=141 Identities=15% Similarity=0.093 Sum_probs=94.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044044 328 VIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNK 407 (508)
Q Consensus 328 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 407 (508)
.-.+.+.+.|++..|...|++++.. +. |...-+.++..... . .-..+++.+..+|.+.+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~~-~-------~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKAE-A-------LKLACHLNLAACYLKLK 271 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHHH-H-------HHHHHhhHHHHHHHhhh
Confidence 3456777888888888777776542 00 11111112221111 1 12345777888999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHH
Q 044044 408 DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVL-EALELF 486 (508)
Q Consensus 408 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~ 486 (508)
++.+|+..-.+.++.+ ++|.-....=..+|...|+++.|+..|+++.+.. +.|...-+.|+.+-.+..++. ...++|
T Consensus 272 ~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999985 4477788888899999999999999999999863 224444555555554444443 347788
Q ss_pred HHHHH
Q 044044 487 RAIRD 491 (508)
Q Consensus 487 ~~m~~ 491 (508)
..|..
T Consensus 350 ~~mF~ 354 (397)
T KOG0543|consen 350 ANMFA 354 (397)
T ss_pred HHHhh
Confidence 88864
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.27 Score=37.07 Aligned_cols=90 Identities=19% Similarity=0.079 Sum_probs=43.8
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHh---HHHHHHHHHHhcC
Q 044044 367 GYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK-GIKPTVV---TYNTLFLGLFEIH 442 (508)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~---~~~~l~~~~~~~g 442 (508)
+....|+++.|++.|.+.+..- +.....||.-..++.-.|+.++|+.=+++.++. |.+ +.. .|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 3445555555555555555442 344555555555555555555555555555544 211 111 1222223344455
Q ss_pred CHHHHHHHHHHHHHCC
Q 044044 443 QVERALKLFDEMRRNH 458 (508)
Q Consensus 443 ~~~~a~~~~~~~~~~~ 458 (508)
+-+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 5555555555555444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.49 Score=44.64 Aligned_cols=64 Identities=14% Similarity=0.009 Sum_probs=50.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044044 178 VTFTSLIKGLCAESRIMEAAALFTKHRVFACE-PDVFTYNTLINGLCRTGHTIVALNLFEEMANG 241 (508)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 241 (508)
.+-..|..++-+.|+.++|++.++++.+.... .+..+...|+.++...+.+.++..++.+..+.
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 33455677777889999999999999865322 23457788999999999999999999997544
|
The molecular function of this protein is uncertain. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.16 Score=43.91 Aligned_cols=99 Identities=13% Similarity=0.153 Sum_probs=73.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-CC-ChhhH
Q 044044 214 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENI-NP-DVVTY 291 (508)
Q Consensus 214 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~-~~~~~ 291 (508)
.|+.-+.. .+.|++..|...|......++.. .-....+.-|...+...|++++|..+|..+.+.-. .| -+..+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s----~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNS----TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCC----cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 46555554 46788999999999999886431 22334566688999999999999999998877521 11 23567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 292 TSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 292 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
-.|..+..+.|+.++|..+|+++.+.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 77777888889999999999988876
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.69 Score=41.19 Aligned_cols=155 Identities=12% Similarity=0.120 Sum_probs=102.3
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHhHHHHHHHHHhcCChh
Q 044044 264 CKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ---GVQPDVVTFSVIMDELCKNGKMD 340 (508)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 340 (508)
...|+..+|-..++++.+. .+.|...++..=.+|...|+.+.-...++++... +++-....-....-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4567888888888888776 5567777887788888889888888888887654 22212222233334556788899
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044044 341 KASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESN---GCMHDVVSYNTLINWYCKNKDVEEALSLYS 417 (508)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 417 (508)
+|.+.-++..+.+ +.|...-.+....+.-.|++.++.+...+-... +...-...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9998888887664 335666667777777788888888887654332 000011112223344566688999999886
Q ss_pred HHH
Q 044044 418 EML 420 (508)
Q Consensus 418 ~~~ 420 (508)
+-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.79 E-value=1.5 Score=40.06 Aligned_cols=110 Identities=13% Similarity=0.106 Sum_probs=82.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYC 404 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (508)
+.+..+.-+...|+...|.++-.+.. -|+..-|..-+.+++..++|++-..+... ..++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 45555667778888888888876663 46888899999999999999887775432 234577888999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 405 KNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEM 454 (508)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (508)
+.|+..+|..+..++ + +..-+..|.++|++.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999888761 1 245567788999999988765433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.46 Score=36.94 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=46.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 044044 218 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRG 297 (508)
Q Consensus 218 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 297 (508)
-.....+.|++++|.+.|+.+..+.+. -+-....-..++.+|.+.+++++|...+++.++.........|...+.+
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~----g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPF----GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 344445677777777777777776531 1122345556677777777777777777777665333233444444444
Q ss_pred HHh
Q 044044 298 FCY 300 (508)
Q Consensus 298 ~~~ 300 (508)
++.
T Consensus 92 L~~ 94 (142)
T PF13512_consen 92 LSY 94 (142)
T ss_pred HHH
Confidence 433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.78 E-value=3.2 Score=43.74 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHhcC--ChHHHHHHHHHHHh
Q 044044 213 FTYNTLINGLCRTG--HTIVALNLFEEMAN 240 (508)
Q Consensus 213 ~~~~~l~~~~~~~g--~~~~A~~~~~~~~~ 240 (508)
.-...++..|.+.+ .+++|+....+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 33446777777776 66777776666654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.33 Score=43.61 Aligned_cols=227 Identities=12% Similarity=0.090 Sum_probs=132.3
Q ss_pred HccCCHHHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC---CHHhHHHHHHHHHhc
Q 044044 264 CKEGFVDKAKELFLKMKDEN--INPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ--GVQP---DVVTFSVIMDELCKN 336 (508)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~ 336 (508)
....+.++|+..+.+...+- ...--.++..+..+.++.|.+++++..--..++. .... -...|..+..++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666766666554430 0112334556667777777777765432211110 0010 122445555555555
Q ss_pred CChhHHHHHHHHHHHc-CCCC---CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcC
Q 044044 337 GKMDKASRLLELMIWR-GVNP---NTYTYNTLIDGYCLTDKIDHARKLFVSMESNG-----CMHDVVSYNTLINWYCKNK 407 (508)
Q Consensus 337 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g 407 (508)
.++.+++.+-..-... |..| .......+..++...+.++++.+.|+...+.- .......+-.+...|....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 5666666655544332 2222 12334456677778888999999988876531 1123456778889999999
Q ss_pred CHHHHHHHHHHHHHC----CCCCCHh-----HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHH
Q 044044 408 DVEEALSLYSEMLSK----GIKPTVV-----TYNTLFLGLFEIHQVERALKLFDEMRRN----HVAA-DTYTYNNFIDGL 473 (508)
Q Consensus 408 ~~~~A~~~~~~~~~~----~~~p~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~ 473 (508)
|+++|.-+..++.+. ++..-.. ....|.-++...|..-.|.+.-++..+. |-.+ -......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 999998877766543 3221111 2234556677888888888877776543 3222 233456677889
Q ss_pred HhcCCHHHHHHHHHHHH
Q 044044 474 CKSGFVLEALELFRAIR 490 (508)
Q Consensus 474 ~~~g~~~~A~~~~~~m~ 490 (508)
...|+.|.|..-|+...
T Consensus 257 R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAM 273 (518)
T ss_pred HhcccHhHHHHHHHHHH
Confidence 99999999888877654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.54 Score=36.55 Aligned_cols=75 Identities=19% Similarity=0.149 Sum_probs=42.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 044044 365 IDGYCLTDKIDHARKLFVSMESNGC--MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF 439 (508)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (508)
.....+.|++++|.+.|+.+...-. +-....--.++.+|.+.|++++|...+++.++..+.....-|...+.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3344556777777777777765521 11233445566677777777777777777776543322333444444443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.01 Score=33.31 Aligned_cols=32 Identities=13% Similarity=0.403 Sum_probs=26.9
Q ss_pred HHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHH
Q 044044 94 FDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVL 127 (508)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 127 (508)
|+++++.+|. +..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~--n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN--NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC--CHHHHHHHHHHHHHCcCHHhhc
Confidence 5677778887 8889999999999999988885
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.7 Score=41.18 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=28.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 399 LINWYCKNKDVEEALSLYSEMLSKGIK-PTVVTYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
+..++-+.|+.++|++.++++.+.... .+......|+.++...+.+.++..++.+-.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 444444555555555555555543211 122244455555555555555555555543
|
The molecular function of this protein is uncertain. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.58 E-value=2.8 Score=41.76 Aligned_cols=358 Identities=13% Similarity=0.091 Sum_probs=195.6
Q ss_pred hccCCCCCCCCChHHHHHHHHHhHHcCCC-------CCCcc-----cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 044044 75 KSSGQGDINLITPNEALCIFDYMLRMHPS-------PPPVS-----SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDI 142 (508)
Q Consensus 75 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 142 (508)
.+-|..++..-++++-..+...+.-.+-. |.+.. .-..++.-+...+.+..|+++-..+...-..- .
T Consensus 393 AsfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~ 471 (829)
T KOG2280|consen 393 ASFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-D 471 (829)
T ss_pred HhhcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-c
Confidence 45677777777888777776665433211 11222 22345666777889999999988775322111 4
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHHhC-CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC----CCHhhHH
Q 044044 143 YTHSILINCFCKMGRVSHGFVVLGRILRS-CF-TPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACE----PDVFTYN 216 (508)
Q Consensus 143 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~ 216 (508)
..|.....-+.+..+.. -..+++.+.+. +. .-....|..+.+-...+|+++-|..+++.=...+.. .+..-+.
T Consensus 472 ~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~ 550 (829)
T KOG2280|consen 472 RVLLEWARRKIKQSDKM-DEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSS 550 (829)
T ss_pred HHHHHHHHHHHhccCcc-chHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHH
Confidence 55555555555553221 12233333221 11 134556777777777889999999888742222100 0122234
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-----cccCCHhHHHHHHH--------HHHccCCHHHHHHHH--HHHhh
Q 044044 217 TLINGLCRTGHTIVALNLFEEMANGNGEFGV-----VCKPNTVTYNTIID--------GLCKEGFVDKAKELF--LKMKD 281 (508)
Q Consensus 217 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~--------~~~~~g~~~~a~~~~--~~~~~ 281 (508)
..+.-+.+.|+.+-...++-.+...-..... ..+.....|.-+++ .+.+.++-.++...| +....
T Consensus 551 ~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~ 630 (829)
T KOG2280|consen 551 LALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYA 630 (829)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhh
Confidence 4455566777777666666555442200000 01111222222222 111122222222211 11000
Q ss_pred C-CCCCChhhHHHHHHHHHhcCCHHH----------HHHHHHHHHH-cCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 044044 282 E-NINPDVVTYTSVIRGFCYANDWNE----------AKRLFIEMMD-QGVQPDVVTFSVIMDELCKNGKMDKASRLLELM 349 (508)
Q Consensus 282 ~-~~~~~~~~~~~l~~~~~~~g~~~~----------a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 349 (508)
. .+.+-..........+.+.....- -+.+.+.+.. .|.....-+.+--+.-+...|+..+|.++-.+.
T Consensus 631 ~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F 710 (829)
T KOG2280|consen 631 AETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF 710 (829)
T ss_pred hhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc
Confidence 0 011111222333444444433111 1122222221 122333345556666778889999999888776
Q ss_pred HHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 044044 350 IWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVV 429 (508)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 429 (508)
. -||...|-.-+.+++..+++++-+++-+... .+.-|.-.+.+|.+.|+.++|.+++.+.... .
T Consensus 711 k----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~- 774 (829)
T KOG2280|consen 711 K----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q- 774 (829)
T ss_pred C----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H-
Confidence 4 5688899889999999999988776655433 2456777889999999999999998664321 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDE 453 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~ 453 (508)
-...+|.+.|++.+|.++--+
T Consensus 775 ---ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 775 ---EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ---HHHHHHHHhccHHHHHHHHHH
Confidence 466788899999998886543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.55 E-value=2.5 Score=42.74 Aligned_cols=151 Identities=16% Similarity=0.115 Sum_probs=92.1
Q ss_pred HHHHhhccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHH
Q 044044 70 LKERCKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILI 149 (508)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 149 (508)
+.+..+.-|.-+...|++++|...|-+.+..-. -..++.-+....+..+-..+++.+.+.|+. +...-..|+
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le-------~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLL 438 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE-------PSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLL 438 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC-------hHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHH
Confidence 334444555566788999999988877654321 234566677777788888899999998854 555567888
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChH
Q 044044 150 NCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTI 229 (508)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 229 (508)
.+|.+.++.+.-.+..+... .|.- ..-....+..+.+.+-.++|..+-.+... +......+ +-..++++
T Consensus 439 ncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~ 507 (933)
T KOG2114|consen 439 NCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYE 507 (933)
T ss_pred HHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHH
Confidence 99999998877666655433 1111 11133445555555666666555444322 22222222 23456667
Q ss_pred HHHHHHHHHH
Q 044044 230 VALNLFEEMA 239 (508)
Q Consensus 230 ~A~~~~~~~~ 239 (508)
+|++++..+.
T Consensus 508 eAl~yi~slp 517 (933)
T KOG2114|consen 508 EALRYISSLP 517 (933)
T ss_pred HHHHHHhcCC
Confidence 7766665553
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.66 Score=37.06 Aligned_cols=123 Identities=12% Similarity=0.048 Sum_probs=52.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHH---HHHHHHhcCCHH
Q 044044 119 KNKHYDTVLSLFKRLNSAGLFPDI-YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS---LIKGLCAESRIM 194 (508)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~ 194 (508)
+.+..++|+.-|..+.+.|...-+ -..........+.|+...|...|+++-.....|-..--.+ -.-.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 344455555555555544422111 1111122233444555555555555544322222110000 111233445555
Q ss_pred HHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044044 195 EAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG 241 (508)
Q Consensus 195 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 241 (508)
......+-+...+-+.-...-..|.-+-.+.|++.+|.++|..+...
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 55555555444333333334445555555556666666666555543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.9 Score=37.16 Aligned_cols=87 Identities=21% Similarity=0.120 Sum_probs=36.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044044 403 YCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEA 482 (508)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 482 (508)
+...++.+++...+.+............+..+...+...++++.+...+......... ....+..+...+...|..+++
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHH
Confidence 3444455555555555444311102334444444444555555555555544443111 122222233333344445555
Q ss_pred HHHHHHHH
Q 044044 483 LELFRAIR 490 (508)
Q Consensus 483 ~~~~~~m~ 490 (508)
...+++..
T Consensus 256 ~~~~~~~~ 263 (291)
T COG0457 256 LEALEKAL 263 (291)
T ss_pred HHHHHHHH
Confidence 55444444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.072 Score=31.98 Aligned_cols=38 Identities=13% Similarity=0.027 Sum_probs=22.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH
Q 044044 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSI 147 (508)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 147 (508)
+|..+...|.+.|++++|.++|+++++.. +-|...+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHH
Confidence 45566666666666666666666666652 334444433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.11 Score=31.23 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=10.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhC
Q 044044 363 TLIDGYCLTDKIDHARKLFVSMESN 387 (508)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (508)
.+...|...|++++|+++|+++.+.
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.87 E-value=2.3 Score=36.62 Aligned_cols=97 Identities=19% Similarity=0.070 Sum_probs=46.5
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhh
Q 044044 212 VFTYNTLINGLCRTGHTIVALNLFEEMANG-NGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVT 290 (508)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 290 (508)
...+......+...+++..+...+...... . .......+......+...++++.+.+.+.........+ ...
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 131 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELEL------LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLA 131 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhh------ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chH
Confidence 344455555555566666666655555431 1 12334445555555555555666666665555432221 111
Q ss_pred HHHHHH-HHHhcCCHHHHHHHHHHHH
Q 044044 291 YTSVIR-GFCYANDWNEAKRLFIEMM 315 (508)
Q Consensus 291 ~~~l~~-~~~~~g~~~~a~~~~~~~~ 315 (508)
...... .+...|+++.+...+.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 132 EALLALGALYELGDYEEALELYEKAL 157 (291)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111111 4445555555555555553
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.8 Score=36.39 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=52.9
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHH
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVV 164 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 164 (508)
++.+++..+++.+.-..|..+...++...+ +...|+|.+|+.+|+++...+ |.......|+..|....+-..-...
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~Wr~~ 99 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSWRRY 99 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHHHHH
Confidence 488999999999998888855555555444 578899999999999987653 4333344444444433322222233
Q ss_pred HHHHHhCC
Q 044044 165 LGRILRSC 172 (508)
Q Consensus 165 ~~~~~~~~ 172 (508)
-+++...+
T Consensus 100 A~evle~~ 107 (160)
T PF09613_consen 100 ADEVLESG 107 (160)
T ss_pred HHHHHhcC
Confidence 33445443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.84 E-value=2.8 Score=37.61 Aligned_cols=165 Identities=10% Similarity=0.112 Sum_probs=82.3
Q ss_pred hcCCHHHHHHHHHHhhhcC--CCCCH-----hhHHHHHHHHHhcC-ChHHHHHHHHHHHhC----CCCCCccccCCH---
Q 044044 189 AESRIMEAAALFTKHRVFA--CEPDV-----FTYNTLINGLCRTG-HTIVALNLFEEMANG----NGEFGVVCKPNT--- 253 (508)
Q Consensus 189 ~~g~~~~A~~~~~~~~~~~--~~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~----~~~~~~~~~~~~--- 253 (508)
+.|+++.|..++.+..... ..|+. ..+..+.......+ +++.|..++++..+. +... ...++.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~--~~~~~~~el 82 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMD--KLSPDGSEL 82 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcc--ccCCcHHHH
Confidence 4566666666666654432 12221 11222333344455 888887777765543 1100 012222
Q ss_pred --hHHHHHHHHHHccCCHH---HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 044044 254 --VTYNTIIDGLCKEGFVD---KAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSV 328 (508)
Q Consensus 254 --~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 328 (508)
.+...++.+|...+..+ +|.++++.+.... +-.+..+..-+..+.+.++.+++.+++.+|...- ......+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 34555666776666544 4555555554432 2234455555666666778888888888887752 212334444
Q ss_pred HHHHHHh--cCChhHHHHHHHHHHHcCCCCC
Q 044044 329 IMDELCK--NGKMDKASRLLELMIWRGVNPN 357 (508)
Q Consensus 329 l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~ 357 (508)
++..+.. ......+...+..++...+.|.
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 4443321 1223445555555544434433
|
It is also involved in sporulation []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.80 E-value=2.3 Score=36.31 Aligned_cols=206 Identities=16% Similarity=0.146 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 044044 254 VTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDEL 333 (508)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 333 (508)
..|..-..+|....++++|...+.+..+. ...+...|. ....++.|.-+.+++.+. ..-...|+--...|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34555566777778888888877776532 111222221 122344455555555443 11123445555566
Q ss_pred HhcCChhHHHHHHHHHHHc--CCCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 044044 334 CKNGKMDKASRLLELMIWR--GVNPN--TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDV 409 (508)
Q Consensus 334 ~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (508)
...|.++.|-..+++.-+. ++.|+ ...|..-+......++...|.+ .+......+.+...+
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e---------------l~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE---------------LYGKCSRVLVRLEKF 166 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH---------------HHHHhhhHhhhhHHh
Confidence 6777766666665554331 22232 1122222222222222222222 233334445555555
Q ss_pred HHHHHHHHHHHHC----CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 044044 410 EEALSLYSEMLSK----GIKPTV-VTYNTLFLGLFEIHQVERALKLFDEMRRNH---VAADTYTYNNFIDGLCKSGFVLE 481 (508)
Q Consensus 410 ~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~ 481 (508)
++|-..+.+-... .--++. ..|...|-.+....++..|.+.++.-.+.+ -.-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 5555444332211 001111 234445555666667777777776644321 223455666677666 4566666
Q ss_pred HHHH
Q 044044 482 ALEL 485 (508)
Q Consensus 482 A~~~ 485 (508)
+.++
T Consensus 246 ~~kv 249 (308)
T KOG1585|consen 246 IKKV 249 (308)
T ss_pred HHHH
Confidence 5554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.78 E-value=1.6 Score=34.39 Aligned_cols=129 Identities=14% Similarity=0.149 Sum_probs=82.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 044044 108 SSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGL 187 (508)
Q Consensus 108 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (508)
.....++..+...+........++.+...+ ..+...++.++..+++.+. .+..+.+.. . .+......+++.|
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c 79 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLC 79 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHH
Confidence 345567777777788888889998888776 4677788888888887643 333333331 1 2333444567777
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHc
Q 044044 188 CAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRT-GHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCK 265 (508)
Q Consensus 188 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (508)
.+.+.++++.-++.++.. +...+..+... ++++.|.+++.+- .+...|..++..+..
T Consensus 80 ~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------------NNPELWAEVLKALLD 137 (140)
T ss_pred HHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------------CCHHHHHHHHHHHHc
Confidence 777888888888876532 22233444444 7788888877651 245677777766553
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.73 E-value=1.8 Score=34.75 Aligned_cols=122 Identities=18% Similarity=0.172 Sum_probs=57.5
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHh-HHH--HHHHHHH
Q 044044 189 AESRIMEAAALFTKHRVFACEPD-VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV-TYN--TIIDGLC 264 (508)
Q Consensus 189 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~--~l~~~~~ 264 (508)
+.+..++|+.-|..+.+.|...- +...........+.|+...|...|+++-... ..|-.. -.. .-.-.+.
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHHHHHHHHHHHh
Confidence 34555556666655555432211 1112223334455666666666666665543 122211 111 1112234
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 265 KEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMD 316 (508)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 316 (508)
..|.|+++..-.+-+...+.+.-...-..|.-+-.+.|++..|...|.++..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4566666655555554443333333344444455566666666666666554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.4 Score=33.49 Aligned_cols=63 Identities=10% Similarity=0.087 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHV 459 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 459 (508)
....+......|+-+.-.+++.++... -.+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344445555555555555555555432 234455555555555555555555555555555543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.38 Score=42.36 Aligned_cols=80 Identities=5% Similarity=0.043 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 044044 392 DVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR-----NHVAADTYTY 466 (508)
Q Consensus 392 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 466 (508)
-..++..++..+...|+++.+...++++.+..+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 3556677777778888888888888888876433 667788888888888888888888877664 4777777666
Q ss_pred HHHHHH
Q 044044 467 NNFIDG 472 (508)
Q Consensus 467 ~~li~~ 472 (508)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 655544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.65 E-value=5.4 Score=39.93 Aligned_cols=77 Identities=17% Similarity=0.216 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH----hcCCH
Q 044044 373 KIDHARKLFVSMESNGCMHDVVSYNTLINWYCKN----KDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF----EIHQV 444 (508)
Q Consensus 373 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~ 444 (508)
+.+.+...+.+....| +......+...|..- .+++.|...+......+ ......+...+. ... +
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-L 525 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-h
Confidence 4555555555555543 444444454444322 34666666666665553 222222332221 122 5
Q ss_pred HHHHHHHHHHHHC
Q 044044 445 ERALKLFDEMRRN 457 (508)
Q Consensus 445 ~~a~~~~~~~~~~ 457 (508)
..|.+++++..+.
T Consensus 526 ~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 526 HLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHhc
Confidence 6677777666654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.64 E-value=4.2 Score=42.92 Aligned_cols=135 Identities=19% Similarity=0.208 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV----TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLID 366 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 366 (508)
|.-.++.-.+.|.+.+|+.++ .|+.. .|......+.....+++|.-+|+..-+ ..-.+.
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~ 973 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALK 973 (1265)
T ss_pred cHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHH
Confidence 333344444555666665554 34443 344444455566677777666655421 123456
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH
Q 044044 367 GYCLTDKIDHARKLFVSMESNGCMHDVVS--YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQV 444 (508)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 444 (508)
+|..+|+|.+|+.+..++... .+... -..|+.-+...+++-+|-++..+.... | ...+..+++...+
T Consensus 974 a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEW 1042 (1265)
T ss_pred HHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHH
Confidence 677778888877777766432 12222 245666677777777777777666542 1 1223334455556
Q ss_pred HHHHHHHHH
Q 044044 445 ERALKLFDE 453 (508)
Q Consensus 445 ~~a~~~~~~ 453 (508)
++|+++-..
T Consensus 1043 ~eAlrva~~ 1051 (1265)
T KOG1920|consen 1043 EEALRVASK 1051 (1265)
T ss_pred HHHHHHHHh
Confidence 666655433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.60 E-value=3.3 Score=37.35 Aligned_cols=133 Identities=14% Similarity=0.263 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh--cC----ChhHHHHHHHHHHHcCC---CCCHHhHHHHHHHHHcCCC-
Q 044044 304 WNEAKRLFIEMMDQGVQPDVVTFSVIMDELCK--NG----KMDKASRLLELMIWRGV---NPNTYTYNTLIDGYCLTDK- 373 (508)
Q Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~- 373 (508)
+++...+++.|.+.|+.-+..+|-+....... .. ....+..+|+.|.+... .++-..+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456667777777776666555443222222 11 24467778888877643 2344455555433 2333
Q ss_pred ---HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 044044 374 ---IDHARKLFVSMESNGCMHDV--VSYNTLINWYCKNKD--VEEALSLYSEMLSKGIKPTVVTYNTLFLGL 438 (508)
Q Consensus 374 ---~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (508)
.+.++.+|+.+.+.|+..+- .....++..+..... ...+.++++.+.+.|+++....|..++-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 35567777777776655432 333333333322222 446778888888888887777766555443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=4.2 Score=38.34 Aligned_cols=121 Identities=8% Similarity=-0.033 Sum_probs=82.1
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
..|+...|-+-...+++..|..|+ ............|+++.+.+.+....+. +.....+...+++...+.|+++.|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 346777775555556666666344 3334444567889999999998777543 3445567788889999999999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFA 207 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 207 (508)
..-+-|+...++ +...........-..|-++++.-.++++...+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999988876554 33333332333344577888888888876654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.56 E-value=3.4 Score=37.29 Aligned_cols=148 Identities=13% Similarity=0.178 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCC---CCCHHhHHHHHHHHHhcCCh
Q 044044 269 VDKAKELFLKMKDENINPDVVTYTSVIRGFCY--AN----DWNEAKRLFIEMMDQGV---QPDVVTFSVIMDELCKNGKM 339 (508)
Q Consensus 269 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 339 (508)
+++...+++.+.+.|+..+..+|-+....... .. ....+..+|+.|.+... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788899999998887766653333322 22 35678999999998742 3344555555433 33333
Q ss_pred ----hHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHcCCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044044 340 ----DKASRLLELMIWRGVNPN--TYTYNTLIDGYCLTDK--IDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEE 411 (508)
Q Consensus 340 ----~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 411 (508)
+.+..+|+.+.+.|...+ ......++........ ..++.++++.+.+.|++.....|..++-...-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 466778888888776544 3344444433332222 45788999999999998888888777655444444334
Q ss_pred HHHHHHH
Q 044044 412 ALSLYSE 418 (508)
Q Consensus 412 A~~~~~~ 418 (508)
...-+.+
T Consensus 236 ~~~~i~e 242 (297)
T PF13170_consen 236 IVEEIKE 242 (297)
T ss_pred HHHHHHH
Confidence 4443333
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=94.28 E-value=7.1 Score=39.76 Aligned_cols=165 Identities=14% Similarity=0.066 Sum_probs=81.8
Q ss_pred hhHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCccccCCH-----hHHHHHHHHHHccCCHHHHHHHHHHHhhC----
Q 044044 213 FTYNTLINGLC-RTGHTIVALNLFEEMANGNGEFGVVCKPNT-----VTYNTIIDGLCKEGFVDKAKELFLKMKDE---- 282 (508)
Q Consensus 213 ~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 282 (508)
.++..+...+. ...++++|...+.+...... .++. .....++..+.+.+... |...+++..+.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~------~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCE------RHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc------ccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 34555555555 46677777777776654331 1111 12234455566655544 77777665543
Q ss_pred CCCCChhhHHHH-HHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHhHHHHHHHH--HhcCChhHHHHHHHHHHHcCC--
Q 044044 283 NINPDVVTYTSV-IRGFCYANDWNEAKRLFIEMMDQG---VQPDVVTFSVIMDEL--CKNGKMDKASRLLELMIWRGV-- 354 (508)
Q Consensus 283 ~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~-- 354 (508)
+..+-...|..+ +..+...+++..|.+.++.+...- ..+...++..++.+. .+.+..+++.+.++.+.....
T Consensus 133 ~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~ 212 (608)
T PF10345_consen 133 GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL 212 (608)
T ss_pred CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc
Confidence 111122223333 222223367777777777765532 122233333344433 344555666666665533211
Q ss_pred -------CCCHHhHHHHHHHH--HcCCCHHHHHHHHHHH
Q 044044 355 -------NPNTYTYNTLIDGY--CLTDKIDHARKLFVSM 384 (508)
Q Consensus 355 -------~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~ 384 (508)
.|...+|..+++.+ ...|+++.+...++++
T Consensus 213 q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 213 QLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22345555555543 3466666665555444
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.63 Score=38.34 Aligned_cols=95 Identities=20% Similarity=0.178 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH----H
Q 044044 394 VSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPT--VVTYNTLFLGLFEIHQVERALKLFDEMRRN---HVAADT----Y 464 (508)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~----~ 464 (508)
..+..++..|++.|+.++|++.|.++.+....+. ...+..++......+++..+...+.+.... +-.++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3456667777777777777777777766533322 334556666677777777777776665532 111111 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 465 TYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 465 ~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
.|..+ .+...|++.+|-+.|-+..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 22222 2345678888877776654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.6 Score=40.49 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=55.9
Q ss_pred CCHHhHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 044044 321 PDVVTFSVIMDELCK-----NGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVS 395 (508)
Q Consensus 321 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 395 (508)
-|..+|...+..+.. .+.++=....++.|.+-|+.-|..+|+.|++.+=+..- .|.. .
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n-v 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN-V 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-H
Confidence 355566666655543 24445555556666667777777777777665433211 1110 0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQ 443 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 443 (508)
+....-.|- .+-+-+++++++|...|+-||..+-..|+.++.+.+-
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111111111 1234466777777777777777777777777766553
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.073 Score=30.25 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 466 YNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 466 ~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
|..|...|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666777777777777776644
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.6 Score=40.50 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=31.1
Q ss_pred CCHhHHHHHHHHHHc-----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 044044 251 PNTVTYNTIIDGLCK-----EGFVDKAKELFLKMKDENINPDVVTYTSVIRGFC 299 (508)
Q Consensus 251 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 299 (508)
.|..+|...+..+.. .+..+-....+..|.+-|+..|..+|+.|++.+-
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfP 118 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFP 118 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCc
Confidence 345555555555543 3456666666777777777777777777777653
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.67 E-value=8.5 Score=38.56 Aligned_cols=78 Identities=15% Similarity=0.077 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCH
Q 044044 408 DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI----HQVERALKLFDEMRRNHVAADTYTYNNFIDGLC----KSGFV 479 (508)
Q Consensus 408 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~ 479 (508)
+.+.+...+.+....| +......|...|..- .+++.|...+......+ ....|+ +...+. -.. +
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEGIKV-L 525 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcch-h
Confidence 4556666666665554 344444454444332 34677777776666554 222332 222221 122 5
Q ss_pred HHHHHHHHHHHHcC
Q 044044 480 LEALELFRAIRDSK 493 (508)
Q Consensus 480 ~~A~~~~~~m~~~g 493 (508)
..|.+++....+.+
T Consensus 526 ~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 526 HLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHHhcC
Confidence 67777777776543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.19 Score=28.48 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 044044 396 YNTLINWYCKNKDVEEALSLYSE 418 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~ 418 (508)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555555
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.60 E-value=1.1 Score=39.64 Aligned_cols=78 Identities=15% Similarity=0.113 Sum_probs=51.7
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhHHHH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS-----KGIKPTVVTYNT 433 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~ 433 (508)
.++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566666677777777777777777665 55666777777777777777777777766654 366666665554
Q ss_pred HHHH
Q 044044 434 LFLG 437 (508)
Q Consensus 434 l~~~ 437 (508)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.42 E-value=3 Score=34.34 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPN--TYTYNTLIDGYCLTDKIDHARKLFVSME 385 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (508)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444555566666666666666666555433332 2334455555555666666555555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.15 Score=28.55 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=12.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 044044 390 MHDVVSYNTLINWYCKNKDVEEAL 413 (508)
Q Consensus 390 ~~~~~~~~~l~~~~~~~g~~~~A~ 413 (508)
|.+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344555555555555555555543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.54 E-value=9.4 Score=35.96 Aligned_cols=95 Identities=21% Similarity=0.155 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHH----HHHH---hcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH--H
Q 044044 407 KDVEEALSLYSEMLSKGIKPTVVTYNTLF----LGLF---EIHQVERALKLFDEMRRNHVAAD----TYTYNNFIDG--L 473 (508)
Q Consensus 407 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~----~~~~---~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~--~ 473 (508)
+.-++|+++++.+.+-. .-|...-+.+. ..|. ....+..-.++-+-+.+.|++|- ...-|.|.++ +
T Consensus 394 ~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyL 472 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYL 472 (549)
T ss_pred CccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 33788888888887742 12333322222 1222 12223333344344456677663 3455666654 5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCccCHHHHHHH
Q 044044 474 CKSGFVLEALELFRAIRDSKYELNIVSYNCL 504 (508)
Q Consensus 474 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 504 (508)
...|++.++.-.-.-+. .+.|+..+|+.+
T Consensus 473 ysqgey~kc~~ys~WL~--~iaPS~~~~RLl 501 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLT--KIAPSPQAYRLL 501 (549)
T ss_pred HhcccHHHHHHHHHHHH--HhCCcHHHHHHH
Confidence 67899998876544444 478888888654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=92.49 E-value=14 Score=37.71 Aligned_cols=404 Identities=13% Similarity=0.075 Sum_probs=199.7
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcc-----cHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCCHHhHHHH-HHHHH
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVS-----SFNILFGCLAKNKHYDTVLSLFKRLNSAG----LFPDIYTHSIL-INCFC 153 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l-~~~~~ 153 (508)
..+++.|...+++....... ++.. .-..++..+.+.+... |...+++.++.- ..+-...|..+ +..+.
T Consensus 73 T~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 73 TENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred cCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 35789999999988655433 2221 2334556666655555 998888876532 12223333443 23333
Q ss_pred hcCCcchHHHHHHHHHhCC---CCCCHHhHHHHHHHHH--hcCCHHHHHHHHHHhhhcCC---------CCCHhhHHHHH
Q 044044 154 KMGRVSHGFVVLGRILRSC---FTPNAVTFTSLIKGLC--AESRIMEAAALFTKHRVFAC---------EPDVFTYNTLI 219 (508)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~l~ 219 (508)
..++...|.+.++.+.... ..+...++-.++.+.. +.+..+++++.++++..... .|-..+|..++
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 4479999999998876532 2344444444554433 44666777777776633211 23455677776
Q ss_pred HHHH--hcCChHHHHHHHHHHHh-------CC------CCCCcccc-----------CCHhHH---------HHHHH--H
Q 044044 220 NGLC--RTGHTIVALNLFEEMAN-------GN------GEFGVVCK-----------PNTVTY---------NTIID--G 262 (508)
Q Consensus 220 ~~~~--~~g~~~~A~~~~~~~~~-------~~------~~~~~~~~-----------~~~~~~---------~~l~~--~ 262 (508)
+.++ ..|+++.+...++++.. .. ++....++ +....| .-++. .
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~ 310 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLH 310 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHH
Confidence 6554 56776666665554432 11 00000000 111111 11122 2
Q ss_pred HHccCCHHHHHHHHHHHhhC--------CCCCC--------hhhHHHHHH---------HHHhcCCHHHHHHHHHHHHHc
Q 044044 263 LCKEGFVDKAKELFLKMKDE--------NINPD--------VVTYTSVIR---------GFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 263 ~~~~g~~~~a~~~~~~~~~~--------~~~~~--------~~~~~~l~~---------~~~~~g~~~~a~~~~~~~~~~ 317 (508)
.+..+..+.|.+++++..+. ...+. ...|...+. ..+-.+++..|...++.+.+.
T Consensus 311 ~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~ 390 (608)
T PF10345_consen 311 NLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQL 390 (608)
T ss_pred HhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 23344444665555554221 11111 111222222 123468899999999988864
Q ss_pred CC-CCC-------HHhHHHHHHHHHhcCChhHHHHHHH--------HHHHcCCCCCHHhHHHH--HHHHHc--CCCHHH-
Q 044044 318 GV-QPD-------VVTFSVIMDELCKNGKMDKASRLLE--------LMIWRGVNPNTYTYNTL--IDGYCL--TDKIDH- 376 (508)
Q Consensus 318 ~~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l--~~~~~~--~g~~~~- 376 (508)
.. .|+ ...+....-.+...|+.+.|...|. .....+...+..++..+ +-.+.. ....++
T Consensus 391 ~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~ 470 (608)
T PF10345_consen 391 CQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSES 470 (608)
T ss_pred HhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhh
Confidence 21 111 1222222334456799999999997 44445555444444332 112222 222333
Q ss_pred -HHHHHHHHHhC-CCCC--CHHHHHHH-HHHHHhcCC--HHHHHHHHHHHHHCC---CCC---CHhHHHHHHHHHHhcCC
Q 044044 377 -ARKLFVSMESN-GCMH--DVVSYNTL-INWYCKNKD--VEEALSLYSEMLSKG---IKP---TVVTYNTLFLGLFEIHQ 443 (508)
Q Consensus 377 -A~~~~~~~~~~-~~~~--~~~~~~~l-~~~~~~~g~--~~~A~~~~~~~~~~~---~~p---~~~~~~~l~~~~~~~g~ 443 (508)
+.++++.+... .-.+ +..++..+ +.++..... ..++...+.+..+.- ... -..+++.|...+. .|+
T Consensus 471 ~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~ 549 (608)
T PF10345_consen 471 ELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGD 549 (608)
T ss_pred HHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCC
Confidence 67777766542 1122 23333333 333322211 224444443322211 111 1223344444444 677
Q ss_pred HHHHHHHHHHHHHC---CCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHH
Q 044044 444 VERALKLFDEMRRN---HVAADTYTYN-----NFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 444 ~~~a~~~~~~~~~~---~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
..+..+........ ...-....|. .+.+.+...|+.++|.....+..
T Consensus 550 ~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 550 VGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 77766555443321 1111344553 33445778899999999887765
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.8 Score=40.89 Aligned_cols=94 Identities=11% Similarity=-0.054 Sum_probs=69.2
Q ss_pred hccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 044044 75 KSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCK 154 (508)
Q Consensus 75 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (508)
...|..|+.+|.+++|++.|.......|. |..++..-..+|.+...+..|..=.+..+..+ ..-...|..-+.+-..
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~--NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPH--NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARES 177 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCC--CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHH
Confidence 56788999999999999999999888876 88888888899999999988877776666432 1112234444444445
Q ss_pred cCCcchHHHHHHHHHhC
Q 044044 155 MGRVSHGFVVLGRILRS 171 (508)
Q Consensus 155 ~g~~~~a~~~~~~~~~~ 171 (508)
.|...+|.+-++.+++.
T Consensus 178 Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLAL 194 (536)
T ss_pred HhhHHHHHHhHHHHHhh
Confidence 56677777777777665
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.38 E-value=3.7 Score=32.15 Aligned_cols=52 Identities=19% Similarity=0.356 Sum_probs=43.3
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAG 137 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 137 (508)
.++++++..+++.+.-..|..+...++...+ +...|+|.+|+.+|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 5689999999999999999866666666555 578899999999999998764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.23 E-value=1.8 Score=41.90 Aligned_cols=149 Identities=19% Similarity=0.133 Sum_probs=99.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 044044 266 EGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRL 345 (508)
Q Consensus 266 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 345 (508)
.|+++.|-.++..+. ....+.++..+.+.|..++|+++- +|... -.....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHH
Confidence 455555554443332 234556677777788888777652 23221 23345678899998887
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 044044 346 LELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIK 425 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 425 (508)
..+.. +..-|..|.++....+++..|.+.|.+... |..|+-.+...|+-+.-..+-....+.|..
T Consensus 660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~ 724 (794)
T KOG0276|consen 660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN 724 (794)
T ss_pred HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc
Confidence 76543 667799999999999999999999887653 445666777778877666666666665532
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 426 PTVVTYNTLFLGLFEIHQVERALKLFDEM 454 (508)
Q Consensus 426 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (508)
|....+|...|+++++.+++..-
T Consensus 725 ------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 ------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ------chHHHHHHHcCCHHHHHHHHHhc
Confidence 33344677889999998887654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.18 E-value=5.1 Score=32.00 Aligned_cols=52 Identities=15% Similarity=-0.010 Sum_probs=27.5
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 369 CLTDKIDHARKLFVSMESNGCMHDV-VSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
.+.++.+++..++..+.-.. |.. ..-..-...+...|++.+|+.+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34556666666666665542 222 22222233455666666666666666554
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.00 E-value=12 Score=35.83 Aligned_cols=98 Identities=11% Similarity=0.161 Sum_probs=70.3
Q ss_pred CCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH--hcCCHHHHHHHHHHHHHC-CCCCCHHHH
Q 044044 391 HDVVS-YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF--EIHQVERALKLFDEMRRN-HVAADTYTY 466 (508)
Q Consensus 391 ~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~-~~~~~~~~~ 466 (508)
++..+ -+.++..+.+.|-..+|...+..+... ++|+...|..+++.-. ..-+..-+.++++.|... | .|+..|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw 533 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLW 533 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHH
Confidence 44433 356777788888899999999998886 5667777777765322 112377788888888754 5 577888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 467 NNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 467 ~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.-.+.--...|..+.+-.++.+...
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 8777777788988888888777654
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.96 E-value=3.2 Score=34.49 Aligned_cols=79 Identities=13% Similarity=0.008 Sum_probs=46.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCH
Q 044044 403 YCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN---HVAADTYTYNNFIDGLCKSGFV 479 (508)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~ 479 (508)
+.+.|+ ++|.+.|-.+...+.--++.....|+..| ...+.+++++++.+..+. +-.+|+..+.+|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 56666666666554443444444444333 356667777777666543 2355677777777777777777
Q ss_pred HHHH
Q 044044 480 LEAL 483 (508)
Q Consensus 480 ~~A~ 483 (508)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7664
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.90 E-value=2.3 Score=41.29 Aligned_cols=131 Identities=15% Similarity=0.096 Sum_probs=67.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLC 188 (508)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (508)
..+.++..+.++|-.++|+++ .+|... -.....+.|+++.|.++..+. .+..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHh
Confidence 344555555566666655544 122211 122334556666666655443 24556666666666
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCC
Q 044044 189 AESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGF 268 (508)
Q Consensus 189 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 268 (508)
+.+++..|.+.|.+... |..|+-.+...|+-+....+-....+.+ ..|...-+|...|+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g------------~~N~AF~~~~l~g~ 736 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG------------KNNLAFLAYFLSGD 736 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc------------ccchHHHHHHHcCC
Confidence 66777777666665443 3344455555555554444444444433 11222334455666
Q ss_pred HHHHHHHHHH
Q 044044 269 VDKAKELFLK 278 (508)
Q Consensus 269 ~~~a~~~~~~ 278 (508)
++++.+++.+
T Consensus 737 ~~~C~~lLi~ 746 (794)
T KOG0276|consen 737 YEECLELLIS 746 (794)
T ss_pred HHHHHHHHHh
Confidence 6666666544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.84 E-value=1.3 Score=39.06 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=70.7
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 044044 353 GVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNG---CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVV 429 (508)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 429 (508)
|......+...++..-....+++.++..+-+++..- ..++.. -.+.++.+ ..-+.++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 444455556666666666778888888887776531 011111 11223333 3346778888888888889999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
+++.+++.+.+.+++.+|..+.-.|+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999988888777654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.77 E-value=6 Score=32.00 Aligned_cols=33 Identities=12% Similarity=0.334 Sum_probs=18.0
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHH
Q 044044 310 LFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKA 342 (508)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 342 (508)
.++.+.+.+++|+...+..+++.+.+.|++...
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L 48 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL 48 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 344444555556666666666666666654433
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.44 E-value=9.5 Score=33.66 Aligned_cols=72 Identities=8% Similarity=0.098 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCccCHHHHH
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR-----DSKYELNIVSYN 502 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~ 502 (508)
++......|..+|.+.+|.++.++....+ +.+...|..++..+...|+--.|.+-++++. +.|+..+..+++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 34556678899999999999999998863 4577888899999999999888888888875 458887776654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.42 E-value=12 Score=34.87 Aligned_cols=52 Identities=10% Similarity=0.078 Sum_probs=25.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHH
Q 044044 114 FGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRIL 169 (508)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 169 (508)
..+..+.|+|+...+........ .++...+..+... ..++++++...++.+.
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r 56 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKAR 56 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHH
Confidence 34555667777644444443321 1233333333322 5666666666655544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.017 Score=45.99 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=49.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 044044 113 LFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR 192 (508)
Q Consensus 113 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (508)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.+.....++.. +..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555666777777777777776554556677777777777777666666665511 11222345555556666
Q ss_pred HHHHHHHHHHh
Q 044044 193 IMEAAALFTKH 203 (508)
Q Consensus 193 ~~~A~~~~~~~ 203 (508)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666655543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.30 E-value=13 Score=35.01 Aligned_cols=130 Identities=17% Similarity=0.248 Sum_probs=102.3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHH
Q 044044 324 VTFSVIMDELCKNGKMDKASRLLELMIWRG-VNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVS-YNTLIN 401 (508)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~ 401 (508)
.+|...++...+....+.|..+|-+..+.+ +.+++.++++++..++ .|+..-|..+|+--... -||... -+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456777888888888999999999999988 6778889999998776 57888999999876665 344444 456677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 402 WYCKNKDVEEALSLYSEMLSKGIKPT--VVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
.+...++-+.|..+|+..+++ +..+ ...|..++.--..-|+...+..+=+.|.+.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 788899999999999976654 2223 567899998888999998888887777763
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.29 E-value=12 Score=34.49 Aligned_cols=146 Identities=11% Similarity=0.011 Sum_probs=99.2
Q ss_pred HHHHhHHcCCCCCCcccHHHHHHHHHhcCC------------hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcch
Q 044044 93 IFDYMLRMHPSPPPVSSFNILFGCLAKNKH------------YDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 160 (508)
-|++.++.+|. |+.+|-.++..--..-. .+.-+.+++++++.+ +.+...+..++..+.+..+.+.
T Consensus 7 el~~~v~~~P~--di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 7 ELNRRVRENPH--DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHhCcc--cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHH
Confidence 45666777777 88888888865443221 456688899988874 5677778888899998888888
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHh---cCCHHHHHHHHHHhhhc------CC----CCC-------HhhHHHHHH
Q 044044 161 GFVVLGRILRSCFTPNAVTFTSLIKGLCA---ESRIMEAAALFTKHRVF------AC----EPD-------VFTYNTLIN 220 (508)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~------~~----~~~-------~~~~~~l~~ 220 (508)
..+.+++++... +-+...|...+..... .-.+.....+|.+.... +. .+. ..++..+..
T Consensus 84 l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~ 162 (321)
T PF08424_consen 84 LAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCR 162 (321)
T ss_pred HHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH
Confidence 888999998763 3367778877765543 23455666666553321 11 011 122334444
Q ss_pred HHHhcCChHHHHHHHHHHHhCC
Q 044044 221 GLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 221 ~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
.+.+.|..+.|+.+++.+.+-+
T Consensus 163 fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 163 FLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHCCchHHHHHHHHHHHHHH
Confidence 5567899999999999998865
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=91.24 E-value=2.4 Score=39.92 Aligned_cols=123 Identities=12% Similarity=0.017 Sum_probs=71.6
Q ss_pred HHHhcCChhHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 044044 332 ELCKNGKMDKASRLLELMIWR-GVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVE 410 (508)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 410 (508)
--...|+.-.|.+-+...++. .-.|+..... ...+...|+++.+...+...... +.....+...+++...+.|+++
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 344556666655544444333 2233433333 33455677888777777655433 1234455667777777778888
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 411 EALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH 458 (508)
Q Consensus 411 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (508)
+|..+-+.|+...+. +...........-..|-++++.-.|+++...+
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 888877777766554 44444443334445566777777777776653
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.11 E-value=8.4 Score=32.41 Aligned_cols=31 Identities=19% Similarity=0.138 Sum_probs=18.2
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 212 VFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
+.+||.+.--+...|+++.|.+.|+...+.+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD 129 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 129 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC
Confidence 3455555555556666666666666665544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.74 Score=25.45 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 465 TYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 465 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555666666666666665554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.88 E-value=2.4 Score=30.19 Aligned_cols=62 Identities=10% Similarity=0.169 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044044 408 DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFI 470 (508)
Q Consensus 408 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 470 (508)
|.=++.+-+..+....+.|++....+.+++|.+.+++..|+++|+-.+.+ ...+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 34455666666666667777777777777777777777777777766633 112333455444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.76 E-value=21 Score=36.29 Aligned_cols=101 Identities=12% Similarity=0.097 Sum_probs=56.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 044044 115 GCLAKNKHYDTVLSLFKRLNSAGLFP---DIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAES 191 (508)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (508)
.-+.+.+.+++|+++.+..... .| -...+...|..+...|++++|-...-.|... +..-|..-+..+...+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 3455677788888777665432 33 2345666777777778888877777777643 4555555555555544
Q ss_pred CHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHh
Q 044044 192 RIMEAAALFTKHRVFACEPDVFTYNTLINGLCR 224 (508)
Q Consensus 192 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 224 (508)
+......+ +.......+...|..++..+..
T Consensus 438 ~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 43322221 2221112344556666665554
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.66 E-value=9.8 Score=32.43 Aligned_cols=25 Identities=4% Similarity=0.157 Sum_probs=16.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC
Q 044044 296 RGFCYANDWNEAKRLFIEMMDQGVQ 320 (508)
Q Consensus 296 ~~~~~~g~~~~a~~~~~~~~~~~~~ 320 (508)
..-...+++.+|+.+|+++....+.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344567788888888887765443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.65 E-value=23 Score=36.63 Aligned_cols=322 Identities=12% Similarity=0.032 Sum_probs=163.4
Q ss_pred hHHHHHHHHHHhCCCC-------CCHHhHHHHHHHHHhc----CCcchHHHHHHHH----HhCCCCCCHHhHHHHHHHHH
Q 044044 124 DTVLSLFKRLNSAGLF-------PDIYTHSILINCFCKM----GRVSHGFVVLGRI----LRSCFTPNAVTFTSLIKGLC 188 (508)
Q Consensus 124 ~~A~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~ 188 (508)
+....+++++...|+. +.-+.|..++.-+.+. +...+..+++..+ ...|.+ + -.|....
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~-~-----eAI~hAl 371 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLP-S-----EAIDHAL 371 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCCh-H-----HHHHHHH
Confidence 3456778888777743 2334555555444332 1223333443333 223321 1 2233445
Q ss_pred hcCCHHHHHHHHHHhhhc---C-----------CCCCHhhH----HHHHHH--HHhcCChHHHHHHHHHHHhCCCCCCcc
Q 044044 189 AESRIMEAAALFTKHRVF---A-----------CEPDVFTY----NTLING--LCRTGHTIVALNLFEEMANGNGEFGVV 248 (508)
Q Consensus 189 ~~g~~~~A~~~~~~~~~~---~-----------~~~~~~~~----~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~ 248 (508)
+.|+++.|-.++++.... + .-|+.... -.+..+ .....++++|..+..++...-+..+
T Consensus 372 aA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~-- 449 (894)
T COG2909 372 AAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPM-- 449 (894)
T ss_pred hCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCc--
Confidence 567777777777664111 0 01221111 112222 3457889999999988876542110
Q ss_pred ccCCH---hHHHHHH-HHHHccCCHHHHHHHHHHHhhC----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044044 249 CKPNT---VTYNTII-DGLCKEGFVDKAKELFLKMKDE----NINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 320 (508)
Q Consensus 249 ~~~~~---~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 320 (508)
..+.. ..++.+- ......|++++|.++-+..... -..+....+..+..+..-.|++++|..+..+..+.--.
T Consensus 450 ~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~ 529 (894)
T COG2909 450 HSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQ 529 (894)
T ss_pred ccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 01111 1333332 2334578899999888877654 22334566777778888899999999998877654222
Q ss_pred CCHHhHHHH-----HHHHHhcCChh--HHHHHHHHHHHcC---C---CCCHHhHHHHHHHHHcC-CCHHHHHHHHHHHHh
Q 044044 321 PDVVTFSVI-----MDELCKNGKMD--KASRLLELMIWRG---V---NPNTYTYNTLIDGYCLT-DKIDHARKLFVSMES 386 (508)
Q Consensus 321 ~~~~~~~~l-----~~~~~~~~~~~--~a~~~~~~~~~~~---~---~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 386 (508)
-+...+..+ ...+...|+.. +....+....... . .+-..++..++.++.+. +...++..-+.....
T Consensus 530 ~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~ 609 (894)
T COG2909 530 HDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSV 609 (894)
T ss_pred cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhh
Confidence 233333222 22455566332 2222333222211 1 11233444555555541 222223333332222
Q ss_pred CCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHhHHHHHHHH--HHhcCCHHHHHHHHHH
Q 044044 387 NGCMHDVVS--YNTLINWYCKNKDVEEALSLYSEMLSKGIKP----TVVTYNTLFLG--LFEIHQVERALKLFDE 453 (508)
Q Consensus 387 ~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 453 (508)
....+-... +..|+......|+.++|...+.++......+ +..+-...+.. -...|+.+++.....+
T Consensus 610 ~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 610 YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 221221222 2356778889999999999999887653222 22222222222 2367788877777665
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.65 E-value=8.6 Score=31.77 Aligned_cols=91 Identities=14% Similarity=0.087 Sum_probs=47.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044044 401 NWYCKNKDVEEALSLYSEMLSKGIKP--TVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGF 478 (508)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 478 (508)
..+...|++++|+.-++..+...... ...+--.|.......|.+++|+..++...+.++ .......-.+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 34556666666666666555431100 011123344555666666666666665554332 22233344456666666
Q ss_pred HHHHHHHHHHHHHcC
Q 044044 479 VLEALELFRAIRDSK 493 (508)
Q Consensus 479 ~~~A~~~~~~m~~~g 493 (508)
-++|+.-|++.+..+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 666666666666553
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.61 E-value=1.6 Score=35.98 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=25.2
Q ss_pred CCCCCCCCChHHHHHHHHHhHHcCCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044044 78 GQGDINLITPNEALCIFDYMLRMHPSPPP---VSSFNILFGCLAKNKHYDTVLSLFKRLNS 135 (508)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 135 (508)
|..++..|++++|..-|..++..-|.-+. ...|..-..++.+.+.++.|+.-..+.++
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie 162 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE 162 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh
Confidence 44444555555555555555544443111 11233333344444444444444444444
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.61 E-value=4.2 Score=29.39 Aligned_cols=47 Identities=6% Similarity=0.166 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 411 EALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 411 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
+..+-+..+....+.|++....+.+.+|.+.+++..|+++|+-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555555566666666666666666666777777666666543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=90.57 E-value=20 Score=36.12 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=17.0
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHH
Q 044044 107 VSSFNILFGCLAKNKHYDTVLSLFKRL 133 (508)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 133 (508)
..-|+ .+..+.-.|.++.|.++++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 45666 566677778888888888443
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.41 E-value=3.5 Score=34.22 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhHHHHHHHHHHhcCCHHHH
Q 044044 375 DHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK---GIKPTVVTYNTLFLGLFEIHQVERA 447 (508)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a 447 (508)
+.|.+.|-.+...+..-++.....+...|. ..|.++++.++-+.++. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555655555554445554444444444 45566666666665543 2245666666666666666666655
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.18 E-value=10 Score=36.04 Aligned_cols=107 Identities=15% Similarity=0.091 Sum_probs=60.1
Q ss_pred HHHcCCCHHHHHHHHHHHHhC---CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCCH---
Q 044044 367 GYCLTDKIDHARKLFVSMESN---GCMH-----DVVSYNTLINWYCKNKDVEEALSLYSEMLS-------KGIKPTV--- 428 (508)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~---~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~--- 428 (508)
.+.-.|++.+|.+++...--. |... .-..||.+.-.+.+.|.+.-+..+|.++++ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 344467777777766543111 1111 122346666666666666666666666553 2433321
Q ss_pred --------hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044044 429 --------VTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCK 475 (508)
Q Consensus 429 --------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 475 (508)
.+|| ..-.|...|++-.|.+.|.+.... +.-++..|..+..+|..
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 1222 334566777888888877777654 44567777777777643
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.07 E-value=0.87 Score=25.06 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 465 TYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 465 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.|..+...+...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555566666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.64 E-value=1 Score=24.82 Aligned_cols=26 Identities=42% Similarity=0.517 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
|..++.+|...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444444444444444444444444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.51 E-value=15 Score=32.93 Aligned_cols=232 Identities=11% Similarity=0.017 Sum_probs=140.6
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCCHHhH
Q 044044 251 PNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDW----NEAKRLFIEMMDQGVQPDVVTF 326 (508)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~ 326 (508)
+|.......+..+...|. +++...+..+... ++...-...+.++.+.|+. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 455566666666666665 3444444445432 3566666677777777763 4677777766443 3455555
Q ss_pred HHHHHHHHhcCCh-----hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044044 327 SVIMDELCKNGKM-----DKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLIN 401 (508)
Q Consensus 327 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (508)
...+.++...+.. ..+...+.... ..++..+-...+.++.+.++ +++...+-.+.+. ++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5556655554321 22333333333 23366666677788888887 4566666666653 45555555555
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044044 402 WYCKNK-DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVL 480 (508)
Q Consensus 402 ~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 480 (508)
++...+ +...+...+..+.. .++..+-...+.++.+.|+. .++..+-+..+.+ + .....+.++.+.|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 565543 24567777766664 34666677788888888884 5666665555542 2 245677888888885
Q ss_pred HHHHHHHHHHHcCCccCHHHHHHHHcc
Q 044044 481 EALELFRAIRDSKYELNIVSYNCLIDG 507 (508)
Q Consensus 481 ~A~~~~~~m~~~g~~p~~~~~~~ll~~ 507 (508)
+|+..+.++.+. .||..+-..-+.+
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 788888888853 3466555444443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.44 E-value=48 Score=38.58 Aligned_cols=321 Identities=11% Similarity=0.059 Sum_probs=149.1
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHh
Q 044044 147 ILINCFCKMGRVSHGFVVLGRILRSCF--TPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCR 224 (508)
Q Consensus 147 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 224 (508)
.+..+-.+.+.+.+|...++.-..... ......|..+...|...++++....+...... +...+ .-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 344455566777777777766311100 11222334444477777777766666653111 11222 23344456
Q ss_pred cCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHHhcCC
Q 044044 225 TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS-VIRGFCYAND 303 (508)
Q Consensus 225 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~ 303 (508)
.|++..|...|+.+...+ ++...+++-++......|.++.+....+-.... ..+....++. =+.+--+.++
T Consensus 1462 ~g~~~da~~Cye~~~q~~-------p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~q 1533 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-------PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQ 1533 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-------CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcc
Confidence 777888888888877764 334556666666666666666666655444332 2222223332 2233345666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHH--HHHHHhcCChh--HHHHHHHHHHHc--------CCC-CCHHhHHHHHHHHHc
Q 044044 304 WNEAKRLFIEMMDQGVQPDVVTFSVI--MDELCKNGKMD--KASRLLELMIWR--------GVN-PNTYTYNTLIDGYCL 370 (508)
Q Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~--~a~~~~~~~~~~--------~~~-~~~~~~~~l~~~~~~ 370 (508)
|+....... +. +..+|... .....+..+-| .-....+.+.+. +.. .-...|..++....-
T Consensus 1534 wD~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l 1606 (2382)
T KOG0890|consen 1534 WDLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL 1606 (2382)
T ss_pred hhhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH
Confidence 666655543 11 12222222 22222221111 111122222211 111 011233333332221
Q ss_pred CCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCC-----CHhHHHHHHHHHHhcCC
Q 044044 371 TDKIDHARKLFVSMES-NGCMHDVVSYNTLINWYCKNKDVEEALSLYSE-MLSKGIKP-----TVVTYNTLFLGLFEIHQ 443 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~p-----~~~~~~~l~~~~~~~g~ 443 (508)
..- +.-.+.+..... .....+..-|-.-+..-....+..+-+--+++ +......| -..+|....+.....|+
T Consensus 1607 ~el-~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1607 LEL-ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred HHH-HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 111 111111111000 00011122232222221111122222211221 11111111 24578888888888999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 444 VERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 444 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
++.|...+-+..+.+ . ...+--..+.+...|+...|+.++++..+.
T Consensus 1686 ~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 999998887777764 2 334555667788899999999999988754
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=89.03 E-value=1.3 Score=26.48 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=12.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 469 FIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 469 li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344455555555555555555543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.02 E-value=7 Score=32.37 Aligned_cols=90 Identities=10% Similarity=0.052 Sum_probs=67.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 044044 366 DGYCLTDKIDHARKLFVSMESNGCMHD-----VVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE 440 (508)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 440 (508)
.-+.+.|++++|..-|...++.- ++. ...|..-..++.+.+.++.|+.-..+.++.+.. .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 44678899999999999888873 222 234555667788899999999998888886432 23334444567888
Q ss_pred cCCHHHHHHHHHHHHHC
Q 044044 441 IHQVERALKLFDEMRRN 457 (508)
Q Consensus 441 ~g~~~~a~~~~~~~~~~ 457 (508)
..++++|++=|+++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 88999999999999886
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.95 E-value=1.2 Score=25.88 Aligned_cols=27 Identities=30% Similarity=0.301 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 464 YTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 464 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 466777788888888888888887776
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.82 E-value=12 Score=30.91 Aligned_cols=89 Identities=17% Similarity=0.126 Sum_probs=37.8
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 044044 332 ELCKNGKMDKASRLLELMIWRGVNPN--TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDV 409 (508)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (508)
.+...+++++|..-++.........+ ..+--.|.+.....|.+|+|...++.....+. .......-.+.+...|+-
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k 175 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCch
Confidence 44455555555555555443211101 11111223344445555555555554443321 111122234445555555
Q ss_pred HHHHHHHHHHHHC
Q 044044 410 EEALSLYSEMLSK 422 (508)
Q Consensus 410 ~~A~~~~~~~~~~ 422 (508)
++|..-|++..+.
T Consensus 176 ~~Ar~ay~kAl~~ 188 (207)
T COG2976 176 QEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555544
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.60 E-value=31 Score=35.20 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=30.2
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 044044 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKM 155 (508)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (508)
...| .+|-.|.+.|++++|.++....... .......+...+..+...
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3455 4566678999999999999555443 344455667777777654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.49 E-value=17 Score=34.70 Aligned_cols=107 Identities=18% Similarity=0.056 Sum_probs=72.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH---CCCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCC--
Q 044044 400 INWYCKNKDVEEALSLYSEMLS---KGIKPT-----VVTYNTLFLGLFEIHQVERALKLFDEMRR-------NHVAAD-- 462 (508)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~---~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~-- 462 (508)
-..+...|++.+|.+++-..-- .|...+ -..||.|.-.+.+.|.+..+..+|.+..+ .|+.|.
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 3456678999999998854321 121112 22346676677788888888888877763 354443
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHHHHHHHHccC
Q 044044 463 ---------TYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508 (508)
Q Consensus 463 ---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 508 (508)
..+||.= -.|...|++-.|.+.|.+.... +..+...|-.|.++|
T Consensus 327 ~tls~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECC 379 (696)
T ss_pred eehhcccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHH
Confidence 2355543 3577999999999999998753 567778887777665
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.26 E-value=1.5 Score=25.52 Aligned_cols=26 Identities=42% Similarity=0.477 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555544
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=88.11 E-value=35 Score=35.35 Aligned_cols=226 Identities=15% Similarity=0.076 Sum_probs=125.3
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCh-------hhHHHHHH-HHHhcCCHHHHHHHHHHHHHc----CCCCCHHhHHHHH
Q 044044 263 LCKEGFVDKAKELFLKMKDENINPDV-------VTYTSVIR-GFCYANDWNEAKRLFIEMMDQ----GVQPDVVTFSVIM 330 (508)
Q Consensus 263 ~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 330 (508)
.....++++|..++.++...-..|+. ..++.+-. .....|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34568899999999887654222221 12333322 234578999999998887764 1233455677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHh---HHHHH--HHHHcCCCHH--HHHHHHHHHHhC---CCC---CCHHHHH
Q 044044 331 DELCKNGKMDKASRLLELMIWRGVNPNTYT---YNTLI--DGYCLTDKID--HARKLFVSMESN---GCM---HDVVSYN 397 (508)
Q Consensus 331 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~--~~~~~~g~~~--~A~~~~~~~~~~---~~~---~~~~~~~ 397 (508)
.+..-.|++++|..+.....+..-.-+... |..+. ..+...|+.. +.+..+...... ..+ +-...+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888889999999998877665422223333 33332 3455667433 333333333222 001 1223444
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHhHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHH
Q 044044 398 TLINWYCKN-KDVEEALSLYSEMLSKGIKPTVVTY--NTLFLGLFEIHQVERALKLFDEMRRNHV----AADTYTYNNFI 470 (508)
Q Consensus 398 ~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li 470 (508)
.+..++.+. +...++..-++-.......|-...+ ..|+......|+.++|...++++..... .++...-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 455555441 2222333333333333223322222 3677888899999999999998876432 22333323333
Q ss_pred HH--HHhcCCHHHHHHHHHH
Q 044044 471 DG--LCKSGFVLEALELFRA 488 (508)
Q Consensus 471 ~~--~~~~g~~~~A~~~~~~ 488 (508)
.. ....|+.+++.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 32 3467888877776655
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.07 E-value=3.2 Score=33.69 Aligned_cols=65 Identities=12% Similarity=0.013 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhc---CChhHHHHHHH-------HHHhCCCCCC-HHhHHHHHHHHHhc
Q 044044 87 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKN---KHYDTVLSLFK-------RLNSAGLFPD-IYTHSILINCFCKM 155 (508)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~-------~~~~~~~~~~-~~~~~~l~~~~~~~ 155 (508)
++.|++.++.....+|. +...++.-..++... .+..++.++++ +.+.. .|+ ..++..+..++...
T Consensus 7 FE~ark~aea~y~~nP~--DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL--DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH--hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHH
Confidence 56788888888888877 776666555555443 33334444444 44442 444 34555566655543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.91 E-value=13 Score=30.12 Aligned_cols=20 Identities=30% Similarity=0.227 Sum_probs=8.6
Q ss_pred HHHHHHccCCHHHHHHHHHH
Q 044044 259 IIDGLCKEGFVDKAKELFLK 278 (508)
Q Consensus 259 l~~~~~~~g~~~~a~~~~~~ 278 (508)
+++.+...|++-+|.++...
T Consensus 95 iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 33444444444444444433
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.89 E-value=4.9 Score=28.73 Aligned_cols=48 Identities=6% Similarity=-0.025 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 374 IDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
.-++.+-++.+...+..|++....+.+++|-+.+|+..|+++++-...
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334555555555556666666666666666666666666666665553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.49 E-value=12 Score=29.38 Aligned_cols=51 Identities=18% Similarity=0.113 Sum_probs=30.5
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 190 ESRIMEAAALFTKHRVFACEPDVF-TYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 190 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
.++.+++..+++.+... .|+.. .-..-.-.+...|++++|+.+|+++.+..
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 56777777777776655 33322 22223334566777777777777776654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.35 E-value=20 Score=31.73 Aligned_cols=59 Identities=10% Similarity=0.088 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 044044 215 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMK 280 (508)
Q Consensus 215 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 280 (508)
++.....|..+|.+.+|.++.+....-+ +.+...+..++..+...|+--.+.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-------pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-------PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-------hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445566777788888888887777764 5667777778888888887767766666654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.93 E-value=2.2 Score=23.33 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
|..+...+...|++++|++.|++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444455555555555544444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.90 E-value=15 Score=32.83 Aligned_cols=100 Identities=17% Similarity=0.309 Sum_probs=71.4
Q ss_pred cCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC---CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 044044 250 KPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDEN---INP--DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV 324 (508)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 324 (508)
+....+...++.......+++.+...+-++.... ..+ +..+|..++. .-+.++++.++..=++.|+-||..
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccchh
Confidence 4445555666666666778888888887776531 112 2233333322 336778999888888899999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRG 353 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 353 (508)
+++.+++.+.+.+++.+|.++.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999888777654
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.73 E-value=71 Score=37.36 Aligned_cols=150 Identities=11% Similarity=0.028 Sum_probs=99.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHH----HhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 044044 112 ILFGCLAKNKHYDTVLSLFKRL----NSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGL 187 (508)
Q Consensus 112 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (508)
.+..+-.+.+.+.+|+..++.- .+. .....-+..+...|...+++|...-+...... +... ..-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl-~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSL-YQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccH-HHHHHHH
Confidence 4445556788899999999883 221 11233344455589999999887777664111 2222 2334455
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHH-HHHHHcc
Q 044044 188 CAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTI-IDGLCKE 266 (508)
Q Consensus 188 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~ 266 (508)
...|++..|...|+++.+.+ ++....++.++......|.+...+-..+...... .+....++.+ ..+.-+.
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-------se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-------SEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-------CHHHHHHHHHHHHHHhhh
Confidence 67799999999999999874 3347778888888888899988888777766553 3344444433 3444677
Q ss_pred CCHHHHHHHHH
Q 044044 267 GFVDKAKELFL 277 (508)
Q Consensus 267 g~~~~a~~~~~ 277 (508)
++++.......
T Consensus 1532 ~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1532 SQWDLLESYLS 1542 (2382)
T ss_pred cchhhhhhhhh
Confidence 78887776665
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=86.67 E-value=40 Score=34.49 Aligned_cols=314 Identities=11% Similarity=0.014 Sum_probs=149.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCHHH
Q 044044 117 LAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSC-FTPNAVTFTSLIKGLCAESRIME 195 (508)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 195 (508)
..+.|++..+.++...+....+ ..-..|..+...+. ....+ ++-.-+.+.. .+.....-...+..+.+.+++.+
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~---ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAV---QVTNFIRANPTLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHH---HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHH
Confidence 4567888888877777653211 11122222222111 11233 2222222221 12222333344455666777776
Q ss_pred HHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHH--HH
Q 044044 196 AAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDK--AK 273 (508)
Q Consensus 196 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--a~ 273 (508)
.+..+.. .+.+...-.....+....|+.++|....+.+-..+ ......++.++..+.+.|.... ..
T Consensus 118 ~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-------~~~p~~cd~l~~~~~~~g~lt~~d~w 185 (644)
T PRK11619 118 LLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-------KSLPNACDKLFSVWQQSGKQDPLAYL 185 (644)
T ss_pred HHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------CCCChHHHHHHHHHHHcCCCCHHHHH
Confidence 6663321 13455555667778888898888887777776655 3345677778888776665433 23
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCCCCHHhHHHHHHHHH--hcCChhHH
Q 044044 274 ELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ---------GVQPDVVTFSVIMDELC--KNGKMDKA 342 (508)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~--~~~~~~~a 342 (508)
+=++.+...| +...-..+.... . .+.....+.+..+... .++++...-..++-++. ...+.+.|
T Consensus 186 ~R~~~al~~~---~~~lA~~l~~~l-~-~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A 260 (644)
T PRK11619 186 ERIRLAMKAG---NTGLVTYLAKQL-P-ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENA 260 (644)
T ss_pred HHHHHHHHCC---CHHHHHHHHHhc-C-hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHH
Confidence 3333333332 333333333322 1 1111111122222111 11122211111111222 23455667
Q ss_pred HHHHHHHHHcC-CCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 343 SRLLELMIWRG-VNPN--TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEM 419 (508)
Q Consensus 343 ~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (508)
..++....... ..+. ..++..+.......+..++|...++...... .+......-+......++++.+...+..|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L 338 (644)
T PRK11619 261 RLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARL 338 (644)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhc
Confidence 77776654332 2211 1223333333333322455555555543321 23334444455555777777777777776
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 420 LSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 420 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
.... .-...-...+..++...|+.++|...|+++.
T Consensus 339 ~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 339 PMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5432 2233444566667666777777777777764
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.49 E-value=7.7 Score=31.62 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 410 EEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH 458 (508)
Q Consensus 410 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (508)
++|...|++..+ ..|+..+|..-+... .+|-++..++.+.+
T Consensus 97 ~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 97 EKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 334444444444 355666666555443 24555555555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.41 E-value=41 Score=34.30 Aligned_cols=98 Identities=10% Similarity=0.018 Sum_probs=61.9
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHH
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVV 164 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 164 (508)
+.+++|++.-+.....-+.......+...+..+...|++++|-...-.|.. -+..-|..-+..+...++......
T Consensus 370 k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l~~Ia~- 444 (846)
T KOG2066|consen 370 KKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQLTDIAP- 444 (846)
T ss_pred hHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccccchhhc-
Confidence 457788777665544333222345778888889999999999999988874 356667777777776666543222
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHh
Q 044044 165 LGRILRSCFTPNAVTFTSLIKGLCA 189 (508)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (508)
-+.......+..+|..++..+..
T Consensus 445 --~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 445 --YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred --cCCCCCcccCchHHHHHHHHHHH
Confidence 22222222455567666666555
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.82 E-value=11 Score=27.29 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 195 EAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 195 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|+++|+.++.+-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~ 75 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC 75 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 555666666666777888888888888888888888888888877763
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.05 E-value=3 Score=22.81 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555544
|
... |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.53 E-value=8.6 Score=32.38 Aligned_cols=75 Identities=13% Similarity=0.107 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 044044 326 FSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNG--CMHDVVSYNTLIN 401 (508)
Q Consensus 326 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~ 401 (508)
.+..++.+.+.+...+++....+-++.. +.|...-..+++.++-.|++++|..-++..-+.. ..+-...|..+|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445556667777777777776666553 2245556666677777777777766666554431 1223344554444
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.53 E-value=31 Score=31.20 Aligned_cols=85 Identities=13% Similarity=-0.004 Sum_probs=42.7
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----c
Q 044044 265 KEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCK----N 336 (508)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 336 (508)
..+++..+...+......+ +......+...|.. ..+..+|.++|+...+.|. ......+...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 4556677777776666543 22233333333332 2345666666665555542 2222333333333 2
Q ss_pred CChhHHHHHHHHHHHcCCC
Q 044044 337 GKMDKASRLLELMIWRGVN 355 (508)
Q Consensus 337 ~~~~~a~~~~~~~~~~~~~ 355 (508)
.+..+|...++.+.+.|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred cCHHHHHHHHHHHHHcCCh
Confidence 3556666666666666543
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.49 E-value=6.7 Score=32.98 Aligned_cols=77 Identities=16% Similarity=0.152 Sum_probs=47.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCC--CCCCHHhHHHHHHH
Q 044044 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSC--FTPNAVTFTSLIKG 186 (508)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 186 (508)
+.+..+..+.+.+.+++|+.+.+.-++.. +-|...-..+++.+|-.|++++|..-++..-+.. ..+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455666677777777777777766653 4455566667777777777777776665554431 22334556665554
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=84.25 E-value=53 Score=33.69 Aligned_cols=256 Identities=11% Similarity=0.016 Sum_probs=142.2
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhc
Q 044044 146 SILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRT 225 (508)
Q Consensus 146 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 225 (508)
..-+..+.+.+++......+. ..+.+......+..+....|+.++|......+=..| .........++..+.+.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSP-----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHc
Confidence 334445556666665554221 124455566667788888899888877777665444 34567788888888877
Q ss_pred CChHHH--HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC---------CCCCChhhHHHH
Q 044044 226 GHTIVA--LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE---------NINPDVVTYTSV 294 (508)
Q Consensus 226 g~~~~A--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~~~~~l 294 (508)
|..... .+-++.+...+ +...-..+..... .+.....+.+..+.+. .+.++...-..+
T Consensus 177 g~lt~~d~w~R~~~al~~~---------~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~ 245 (644)
T PRK11619 177 GKQDPLAYLERIRLAMKAG---------NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMA 245 (644)
T ss_pred CCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHH
Confidence 765443 33333333332 3333333443331 1112112222222211 122232222222
Q ss_pred HHHHH--hcCCHHHHHHHHHHHHHcC-CCCCH--HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 044044 295 IRGFC--YANDWNEAKRLFIEMMDQG-VQPDV--VTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYC 369 (508)
Q Consensus 295 ~~~~~--~~g~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (508)
+.++. ...+.+.|..++....... ..+.. .....+.......+..+++...++...... .+......-+..-.
T Consensus 246 ~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al 323 (644)
T PRK11619 246 AVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMAL 323 (644)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHH
Confidence 23332 3456788999998875543 22222 233444333344333667777777654332 24444555566666
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 370 LTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
..++++.+...+..|.... .-...-.--+.+++...|+.++|...|+++..
T Consensus 324 ~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8999999999999886543 22333344467777779999999999999844
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=84.20 E-value=17 Score=32.06 Aligned_cols=87 Identities=8% Similarity=0.036 Sum_probs=37.0
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----
Q 044044 260 IDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCK---- 335 (508)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 335 (508)
|.+++..++|.++..+.-+..+.--+..+.....-|-.|.+.+++..+.++-...+...-.-+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4455555555555554444332211112223333333445555555555555544443212222234444443332
Q ss_pred -cCChhHHHHHH
Q 044044 336 -NGKMDKASRLL 346 (508)
Q Consensus 336 -~~~~~~a~~~~ 346 (508)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 45555555444
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.20 E-value=3.5 Score=22.56 Aligned_cols=27 Identities=30% Similarity=0.239 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 465 TYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 465 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
+|..+...|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677778888888888888887765
|
... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=83.20 E-value=46 Score=32.20 Aligned_cols=164 Identities=14% Similarity=0.114 Sum_probs=86.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 044044 287 DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLID 366 (508)
Q Consensus 287 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 366 (508)
|.....+++..+.++..+.-++.+..+|...| .+...|..++.+|... ..+.-..+++++.+..+. |.+.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44455566666666666666666666666653 3455566666666665 445566666666655433 3444444444
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHh
Q 044044 367 GYCLTDKIDHARKLFVSMESNGCMH-----DVVSYNTLINWYCKNKDVEEALSLYSEMLSK-GIKPTVVTYNTLFLGLFE 440 (508)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~ 440 (508)
.|-+ ++...+...|.++...-++. -...|..+... -..+.+..+.+..++... |..--...+.-+..-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4443 66666666666655432110 01133333321 123455555555555543 333334444455555666
Q ss_pred cCCHHHHHHHHHHHHHC
Q 044044 441 IHQVERALKLFDEMRRN 457 (508)
Q Consensus 441 ~g~~~~a~~~~~~~~~~ 457 (508)
..++.+|++++..+.+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 66677777776666554
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=83.17 E-value=38 Score=31.21 Aligned_cols=77 Identities=8% Similarity=0.021 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH
Q 044044 342 ASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK---NKDVEEALSLYSE 418 (508)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 418 (508)
-+.+++++++.+. .+.......+..+.+..+.++..+.|+++.... +-+...|...+..... .-.++....+|.+
T Consensus 50 klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 50 KLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3445555555422 234445555555555555555555555555542 2344555555444332 1234444444444
Q ss_pred HH
Q 044044 419 ML 420 (508)
Q Consensus 419 ~~ 420 (508)
.+
T Consensus 128 ~l 129 (321)
T PF08424_consen 128 CL 129 (321)
T ss_pred HH
Confidence 33
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.92 E-value=9.4 Score=34.46 Aligned_cols=51 Identities=8% Similarity=-0.083 Sum_probs=22.1
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044044 187 LCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEM 238 (508)
Q Consensus 187 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 238 (508)
|.++|.+++|+..|.+..... +.+.+++..-..+|.+...+..|..=....
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 444455555555544433321 114444444444444444444444433333
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.91 E-value=47 Score=32.13 Aligned_cols=178 Identities=14% Similarity=0.102 Sum_probs=97.6
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCH
Q 044044 174 TPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT 253 (508)
Q Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 253 (508)
..|.....+++..+.......-...+..+|...| -+...|..++.+|... ..+.-..+++++.+.+ -.|+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-------fnDv 132 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-------FNDV 132 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-------chhH
Confidence 3455566667777777766766777777777664 3556677777777766 5566677777766653 2233
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHhHH
Q 044044 254 VTYNTIIDGLCKEGFVDKAKELFLKMKDENINP-----DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GVQPDVVTFS 327 (508)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~ 327 (508)
+.-..|...|-+ ++.+.+..+|.++...-++. -...|..+... -..+.+....+...+... |...-.+.+.
T Consensus 133 v~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~q 209 (711)
T COG1747 133 VIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQ 209 (711)
T ss_pred HHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHH
Confidence 333444444444 66677777777665442110 11233333331 134455555555555442 3233334444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHH
Q 044044 328 VIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLI 365 (508)
Q Consensus 328 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 365 (508)
-+-.-|....++++|++++..+.+.+- -|...-..++
T Consensus 210 dv~~~Ys~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i 246 (711)
T COG1747 210 DVYKKYSENENWTEAIRILKHILEHDE-KDVWARKEII 246 (711)
T ss_pred HHHHHhccccCHHHHHHHHHHHhhhcc-hhhhHHHHHH
Confidence 455556666666677776666665532 2443333343
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=82.58 E-value=2.2 Score=21.89 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=10.7
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 044044 468 NFIDGLCKSGFVLEALELFR 487 (508)
Q Consensus 468 ~li~~~~~~g~~~~A~~~~~ 487 (508)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555543
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.56 E-value=3 Score=22.53 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 468 NFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 468 ~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.+..++.+.|++++|.+.|+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344555666666666666666654
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.19 E-value=0.63 Score=36.82 Aligned_cols=85 Identities=11% Similarity=0.104 Sum_probs=58.5
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCC
Q 044044 148 LINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGH 227 (508)
Q Consensus 148 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 227 (508)
++..+.+.+..+.....++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45666677888888888888887766677888899999999988777777777621 11333456666667777
Q ss_pred hHHHHHHHHHHH
Q 044044 228 TIVALNLFEEMA 239 (508)
Q Consensus 228 ~~~A~~~~~~~~ 239 (508)
+++|.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 777776666543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=82.14 E-value=17 Score=26.34 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=26.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044044 437 GLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSK 493 (508)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 493 (508)
.+...|++++|..+.+.+ ..||...|-+|- -.+.|..+++..-+.+|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 344555566655555443 245555554442 235555555555555555544
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=80.98 E-value=25 Score=31.00 Aligned_cols=90 Identities=12% Similarity=0.104 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH--
Q 044044 292 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYC-- 369 (508)
Q Consensus 292 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 369 (508)
..-|++++..++|.++....-+.-+.--+........-|-.|.+.+++..+.++-..-....-+-+...|..++..|.
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 344678888888888877765554432122233444455568888888888888777665433334445776665554
Q ss_pred ---cCCCHHHHHHHH
Q 044044 370 ---LTDKIDHARKLF 381 (508)
Q Consensus 370 ---~~g~~~~A~~~~ 381 (508)
-.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 468888888877
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=80.56 E-value=2 Score=23.26 Aligned_cols=25 Identities=32% Similarity=0.487 Sum_probs=15.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 044044 112 ILFGCLAKNKHYDTVLSLFKRLNSA 136 (508)
Q Consensus 112 ~l~~~~~~~g~~~~A~~~~~~~~~~ 136 (508)
.+..++.+.|++++|.+.|+++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4455556666666666666666553
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=80.14 E-value=51 Score=30.67 Aligned_cols=64 Identities=11% Similarity=-0.013 Sum_probs=31.7
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMH---DVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
..+|..++..+.+.|.++.|...+..+...+... .+...-.-+...-..|+..+|+..+++..+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555566666666666666665555432111 122222233444455555666665555554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=80.01 E-value=4.5 Score=24.17 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=11.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 044044 399 LINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
+..+|...|+.+.|.+++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34444555555555555554443
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 94.1 bits (232), Expect = 2e-20
Identities = 27/220 (12%), Positives = 73/220 (33%), Gaps = 4/220 (1%)
Query: 174 TPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALN 233
+P L++ + + A +H T +A +
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 234 LFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 293
L + + YN ++ G ++G + + +KD + PD+++Y +
Sbjct: 149 LLVVHHGQRQKRKL---LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205
Query: 294 VIRGFCYANDWNEA-KRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWR 352
++ + +R +M +G++ + +V++ E + + ++
Sbjct: 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLP 265
Query: 353 GVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHD 392
P + L+ D KL + +++ C+ +
Sbjct: 266 PQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 93.7 bits (231), Expect = 3e-20
Identities = 21/206 (10%), Positives = 59/206 (28%), Gaps = 4/206 (1%)
Query: 305 NEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTL 364
A L P + ++ E +D ++
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 365 IDGYCLTDKIDHARKLFV---SMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421
LTD++ A L V + + YN ++ + + +E + + +
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 422 KGIKPTVVTYNTLFLGLFEIHQVERAL-KLFDEMRRNHVAADTYTYNNFIDGLCKSGFVL 480
G+ P +++Y + Q + + ++M + + + ++ +
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 481 EALELFRAIRDSKYELNIVSYNCLID 506
++ V+ + L+
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLR 279
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.1 bits (149), Expect = 2e-10
Identities = 12/107 (11%), Positives = 30/107 (28%), Gaps = 3/107 (2%)
Query: 405 KNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR---NHVAA 461
++ + + + F Q+ A L
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 462 DTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508
YN + G + G E + + ++D+ +++SY + +
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCM 210
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.5 bits (137), Expect = 6e-09
Identities = 24/222 (10%), Positives = 66/222 (29%), Gaps = 13/222 (5%)
Query: 29 PHTRKPTSSISENEPSYPTTTSKLKESLRLTVKDRASLKKFLKERCKSSGQGDINLIT-- 86
TR+ S E + + + K SL ++A + + + Q +
Sbjct: 81 DCTRQAPESPWEEQLARLLQEAPGKLSLD---VEQAPSGQHSQAQLSGQQQRLLAFFKCC 137
Query: 87 -----PNEALCIFDYMLRM--HPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLF 139
A + + +N + A+ + ++ + + AGL
Sbjct: 138 LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197
Query: 140 PDIYTHSILINCFCKMGRVSHGFV-VLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAA 198
PD+ +++ + C + + + L ++ + A+ L+ + +
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257
Query: 199 LFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240
+ + P + L+ + + L +
Sbjct: 258 VKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKT 299
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 2e-09
Identities = 84/560 (15%), Positives = 155/560 (27%), Gaps = 178/560 (31%)
Query: 66 LKKFLKE-RCKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYD 124
F+ CK ++++ E D+++ S VS LF L +K +
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEE----IDHIIM---SKDAVSGTLRLFWTL-LSKQEE 77
Query: 125 TVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVT--FTS 182
V ++ L + Y F++ I P+ +T +
Sbjct: 78 MV----QKFVEEVLRIN-Y-----------------KFLM-SPIKTEQRQPSMMTRMYIE 114
Query: 183 LIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCR--------------TGHT 228
L ++++ F K+ V +P Y L L +G T
Sbjct: 115 QRDRLYNDNQV------FAKYNVSRLQP----YLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 229 IVALNL-----FEEMANGNG---EFGVVCKPNTV-------------TYNTIIDGLCK-- 265
VAL++ + + P TV + + D
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 266 ---EGFVDKAKELFLKMKDEN--INPDVVTYTSVIRGF---C-------YAN-----DWN 305
+ + L EN + V F C +
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 306 EAKRLFIEMMDQGVQPD--VVTFSVIMDELCKNGK----MDKASRLLELMIWRGV--NPN 357
+ ++ + PD +D C+ + + +I +
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLD--CRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 358 TYTY---------NTLIDGYCLTDKIDHA--RKLFVSM----ESNGCMHDV-VSYNTL-I 400
T+ T+I+ L + ++ A RK+F + + L +
Sbjct: 343 TWDNWKHVNCDKLTTIIES-SL-NVLEPAEYRKMFDRLSVFPP------SAHIPTILLSL 394
Query: 401 NWYCKNKDVEEA----LSLYSEMLSKGIKPTVVTYNTLFL-------GLFEIHQ--VER- 446
W+ K L YS ++ K K + ++ +++L + +H+ V+
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 447 -ALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALE------LFRA----------- 488
K FD D Y Y + I G L+ +E LFR
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFY-SHI------GHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 489 IRDSKYELNIVSY--NCLID 506
IR N N L
Sbjct: 507 IRHDSTAWNASGSILNTLQQ 526
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 44/291 (15%), Positives = 83/291 (28%), Gaps = 65/291 (22%)
Query: 250 KPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPD-VVTYTSVIRGFCYA--NDWNE 306
P +Y + L + + + F K ++NP+ TY RG Y D+
Sbjct: 273 HPTPNSYIFLALTLADKENSQEFFKFFQKA--VDLNPEYPPTYYH--RGQMYFILQDYKN 328
Query: 307 AKRLF---IEMMDQGVQPDVVTFSVIMDELC----KNGKMDKA----SRLLELMIWRGVN 355
AK F + P+ +L K GK ++ +
Sbjct: 329 AKEDFQKAQS-----LNPE---NVYPYIQLACLLYKQGKFTESEAFFNETKLK------F 374
Query: 356 PNTY-TYNTLIDGYCLTD--KIDHARKLF---VSMESN------------GCMHDVVSYN 397
P LTD D A K + +E G + +
Sbjct: 375 PTLPEVPTFF--AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQS 432
Query: 398 TLINWYCKNKDVEEALSLYSEMLSKGIKPT-VVTYNTLFLGLFEIHQVERALKLFD---E 453
+ + A+ L ++ + P L ++ +++ A++LF+
Sbjct: 433 SQDPTQLDEEKFNAAIKLLTKACE--LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490
Query: 454 MRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCL 504
+ R ++ + + L I K EL + Y
Sbjct: 491 LARTMDEK----LQAT--TFAEAAKIQKRLRADPIISA-KMELTLARYRAK 534
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 56/442 (12%), Positives = 125/442 (28%), Gaps = 58/442 (13%)
Query: 88 NEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKR---LNSAGLFPDIY- 143
NEA+ + Y + + P+ P ++ + C + V+ + + PD
Sbjct: 42 NEAIKYYQYAIELDPNEP--VFYSNISACYISTGDLEKVIEFTTKALEIK-----PDHSK 94
Query: 144 THSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKH 203
+ +G + L + + A L + L ++ + L
Sbjct: 95 ALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDE 154
Query: 204 -RVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK---PNTVTYNTI 259
R P + + G+ + + ++N + T +
Sbjct: 155 GRGSQVLPSNTSLASFF-GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLV 213
Query: 260 IDGLCKEGFVDKAKELFLKMKDENINPD-VVTYTSVIRGFCYA--NDWNEAKRLF---IE 313
+ L + L D+ + + + G + N+ +A+ L I
Sbjct: 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALC--YTGIFHFLKNNLLDAQVLLQESIN 271
Query: 314 MMDQGVQPDVVTFSVIMDELCKNGKMDKA----SRLLELMIWRGVNPN-TYTYNTLIDGY 368
+ P ++ + L + + ++L NP TY Y
Sbjct: 272 L-----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL------NPEYPPTYYHRGQMY 320
Query: 369 CLTDKIDHARKLF---VSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIK 425
+ +A++ F S+ +V Y L K E+ + ++E
Sbjct: 321 FILQDYKNAKEDFQKAQSLNPE----NVYPYIQLACLLYKQGKFTESEAFFNETKL--KF 374
Query: 426 PTVV-TYNTLFLGLFEIHQVERALKLFD---EMRRNHVAADTYTYNNFIDGLCKSGFVLE 481
PT+ L + + A+K +D + + + K+ +
Sbjct: 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI----HVGIGPLIGKATILAR 430
Query: 482 ALELFRAIRD-SKYELNIVSYN 502
D K+ I
Sbjct: 431 QSSQDPTQLDEEKFNAAIKLLT 452
|
| >2rdy_A BH0842 protein; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.03A {Bacillus halodurans c-125} Length = 803 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 5e-04
Identities = 27/155 (17%), Positives = 46/155 (29%), Gaps = 22/155 (14%)
Query: 241 GNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCY 300
GNG G + KE L+ + NP +R
Sbjct: 21 GNGNLGAMVFGKVE----------KERIALNEDTLWSGYPKDWNNPKAKEVLPKVRELIA 70
Query: 301 ANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYT 360
+ EA +L +MM Q + + + R L+L G+ TYT
Sbjct: 71 QEKYEEADQLSRDMMGPYTQSYLPFGDLNIFMDHGQVVAPHYHRELDL--STGIVTVTYT 128
Query: 361 YNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVS 395
+ + R+LFV+ + + +
Sbjct: 129 I----------GGVQYTRELFVTYPDRAIVVRLTA 153
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 8e-04
Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 21/168 (12%)
Query: 332 ELCKNGKMDKASRLLELMIWRGVNPN-TYTYNTLIDGYCLTDKIDHARKLF---VSMESN 387
+ G + A R + P+ T L + ++D + +
Sbjct: 8 REYQAGDFEAAERHCMQLW--RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 388 GCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVV-TYNTLFLGLFEIHQVER 446
+Y+ L N Y + ++EA+ Y L +KP + Y L L +E
Sbjct: 66 ----LAEAYSNLGNVYKERGQLQEAIEHYRHALR--LKPDFIDGYINLAAALVAAGDMEG 119
Query: 447 ALKLFD---EMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFR-AIR 490
A++ + + + ++ + L G + EA + AI
Sbjct: 120 AVQAYVSALQYNPDLYCV----RSDLGNLLKALGRLEEAKACYLKAIE 163
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 508 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.98 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.85 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.83 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.75 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.75 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.75 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.72 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.71 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.71 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.7 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.69 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.68 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.68 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.68 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.67 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.67 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.66 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.66 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.66 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.65 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.64 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.64 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.63 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.61 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.61 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.61 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.6 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.59 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.58 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.58 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.58 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.56 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.56 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.56 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.53 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.53 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.53 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.51 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.5 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.48 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.47 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.46 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.41 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.4 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.38 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.36 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.34 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.34 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.34 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.33 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.32 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.27 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.23 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.23 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.23 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.19 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.18 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.18 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.18 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.17 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.17 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.16 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.16 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.15 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.15 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.14 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.11 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.11 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.1 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.1 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.1 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.08 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.08 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.06 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.05 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.04 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.02 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.01 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.01 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.98 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.91 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.9 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.88 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.88 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.87 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.87 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.85 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.85 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.84 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.83 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.79 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.78 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.76 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.76 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.76 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.75 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.74 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.74 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.74 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.74 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.73 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.71 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.71 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.7 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.7 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.7 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.68 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.68 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.67 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.67 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.66 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.62 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.6 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.6 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.59 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.59 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.58 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.58 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.58 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.55 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.54 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.51 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.51 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.51 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.5 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.5 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.49 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.47 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.46 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.45 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.45 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.44 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.44 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.41 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.4 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.37 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.36 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.35 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.33 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.3 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.29 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.28 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.26 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.24 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.24 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.22 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.2 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.19 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.19 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.18 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.17 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.17 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.16 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.15 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.15 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.14 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.1 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.09 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.04 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.02 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.01 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.95 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.87 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.87 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.86 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.83 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.81 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.73 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.71 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.6 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.6 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.36 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.16 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.15 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.14 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.13 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.07 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.03 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.01 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.97 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.94 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.89 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.8 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.66 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.66 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.64 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.6 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.58 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.51 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.36 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.22 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.14 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.09 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.98 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.77 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.7 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.69 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.93 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 94.78 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.52 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.34 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.28 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.13 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.12 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.0 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.96 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.84 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 93.25 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.18 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.49 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 92.46 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.2 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.07 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.49 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.45 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.21 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.21 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.2 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.11 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.88 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.28 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 87.74 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 86.52 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 85.99 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 85.33 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 83.95 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 83.66 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.4 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 81.63 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.31 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 81.31 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.25 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-37 Score=308.79 Aligned_cols=395 Identities=12% Similarity=0.001 Sum_probs=276.9
Q ss_pred CCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcch
Q 044044 81 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 160 (508)
+...|++++|+.+|+++.+..| +..++..++.+|.+.|++++|+.+|+++... +++..+++.++.+|.+.|++++
T Consensus 94 ~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 168 (597)
T 2xpi_A 94 ALMQQQYKCAAFVGEKVLDITG---NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQG 168 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHccCchHHHHHHHHHHhhCC---CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHH
Confidence 3456788888888888876654 4467777888888888888888888877543 5677788888888888888888
Q ss_pred HHHHHHHHHhC---------------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCC-----------------
Q 044044 161 GFVVLGRILRS---------------CFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFAC----------------- 208 (508)
Q Consensus 161 a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------------- 208 (508)
|.++|+++... +.+.+..+|+.++.+|.+.|++++|+++|+++...+.
T Consensus 169 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 248 (597)
T 2xpi_A 169 ALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTA 248 (597)
T ss_dssp HHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCH
T ss_pred HHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccc
Confidence 88888743211 1233467788888888888888888888877765431
Q ss_pred -----------------------------------------------------CCCHhhHHHHHHHHHhcCChHHHHHHH
Q 044044 209 -----------------------------------------------------EPDVFTYNTLINGLCRTGHTIVALNLF 235 (508)
Q Consensus 209 -----------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 235 (508)
+++..+|+.++.+|.+.|++++|+++|
T Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (597)
T 2xpi_A 249 DEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAIT 328 (597)
T ss_dssp HHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 145555666666666666666666666
Q ss_pred HHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 236 EEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMM 315 (508)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 315 (508)
+++...+ +.+..++..++.++.+.|++++|.++++++.+. .+.+..+++.++..|.+.|++++|.++|+++.
T Consensus 329 ~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 400 (597)
T 2xpi_A 329 TKILEID-------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400 (597)
T ss_dssp HHHHHHC-------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcC-------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6666543 335556666666666666666666666666643 23356677777777777777777777777776
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 044044 316 DQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVS 395 (508)
Q Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 395 (508)
+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+
T Consensus 401 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 477 (597)
T 2xpi_A 401 TMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLL 477 (597)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 642 3356677777777777777777777777777653 3356677777777777777777777777776654 446777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLSK----GIKPT--VVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNF 469 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 469 (508)
|+.++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|+++++++.+.+ +.+..+|..+
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l 556 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAI 556 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 777777777777777777777777665 44565 5677777777777777777777777777653 3367777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 044044 470 IDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 470 i~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
..+|.+.|++++|.+.|+++.+.
T Consensus 557 ~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 557 ALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 77777777777777777777754
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=298.09 Aligned_cols=408 Identities=9% Similarity=-0.052 Sum_probs=322.3
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHH
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVV 164 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 164 (508)
|.+..+...++.. |. ++...|+.++..+.+.|++++|+.+|+++.+. .|+..++..++.+|.+.|++++|..+
T Consensus 67 ~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 67 GSFLKERNAQNTD----SL-SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccCCCCCccccc----hH-HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 3444455555432 32 47788999999999999999999999999864 67889999999999999999999999
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc---------------CCCCCHhhHHHHHHHHHhcCChH
Q 044044 165 LGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF---------------ACEPDVFTYNTLINGLCRTGHTI 229 (508)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~ 229 (508)
++++... +++..+++.++.+|.+.|++++|+++|+++... +.+.+..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9988654 678999999999999999999999999953221 22335889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCC---------------------------------------------------------------
Q 044044 230 VALNLFEEMANGNGEFG--------------------------------------------------------------- 246 (508)
Q Consensus 230 ~A~~~~~~~~~~~~~~~--------------------------------------------------------------- 246 (508)
+|+++|+++...++...
T Consensus 218 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 218 RAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 99999999987653210
Q ss_pred -ccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 044044 247 -VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVT 325 (508)
Q Consensus 247 -~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 325 (508)
...+++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..+
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 375 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVT 375 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHH
T ss_pred hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHH
Confidence 0113677788888888888888888888888887654 3367778888888888888888888888887653 556778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044044 326 FSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK 405 (508)
Q Consensus 326 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (508)
+..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 8888888888999999999998888753 3357788888888889999999999998888775 5577888888888999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCH
Q 044044 406 NKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN----HVAAD--TYTYNNFIDGLCKSGFV 479 (508)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~ 479 (508)
.|++++|+++|+++.+... .+..+|+.++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++
T Consensus 454 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 454 LGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 9999999999988887643 36788888889999999999999999888765 55676 67888899999999999
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHcc
Q 044044 480 LEALELFRAIRDSKYELNIVSYNCLIDG 507 (508)
Q Consensus 480 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 507 (508)
++|.+.|+++.+.+ ..+..+|..+..+
T Consensus 533 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 533 DAAIDALNQGLLLS-TNDANVHTAIALV 559 (597)
T ss_dssp HHHHHHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 99999998888754 3366777666543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-30 Score=246.46 Aligned_cols=378 Identities=15% Similarity=0.045 Sum_probs=285.2
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchH
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHG 161 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 161 (508)
+..|++++|+..++.+.+..|. +...+..+...+...|++++|...++...+.. +.+...|..+...+.+.|++++|
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 3457888888888888888776 67777788888888888888888888887753 55777888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044044 162 FVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG 241 (508)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 241 (508)
...|+++.+.. +.+...|..+..++.+.|++++|++.|+++.... +.+...+..+...+...|++++|++.|+++...
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 88888887753 3355678888888888888888888888887764 334556777778888888888888888888775
Q ss_pred CCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 044044 242 NGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 321 (508)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 321 (508)
. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|+..+++..... +.
T Consensus 165 ~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 235 (388)
T 1w3b_A 165 Q-------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN 235 (388)
T ss_dssp C-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT
T ss_pred C-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC
Confidence 4 3456778888888888888888888888887753 2356677777788888888888888888777653 33
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044044 322 DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLIN 401 (508)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (508)
+..++..+..++.+.|++++|...++++++.+ +.+..++..+...+.+.|++++|.+.++++.+.. +.+..+|+.++.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 56677777888888888888888888887763 2246677778888888888888888888877764 567777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044044 402 WYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSG 477 (508)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 477 (508)
.+...|++++|+..++++.+.. +.+..++..++.++.+.|++++|++.++++.+.. +.+...|..+...+...|
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 8888888888888888887753 3356677788888888888888888888887652 234556666666665544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-29 Score=238.17 Aligned_cols=367 Identities=14% Similarity=0.048 Sum_probs=323.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 044044 113 LFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR 192 (508)
Q Consensus 113 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (508)
+...+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3566788999999999999998763 4466777788888999999999999999988764 5678899999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHH
Q 044044 193 IMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKA 272 (508)
Q Consensus 193 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 272 (508)
+++|+..|+++.... +.+..+|..+..++.+.|++++|++.|+++.... +.+...+..+...+...|++++|
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-------PDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-------TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHccCHHHH
Confidence 999999999998874 4456789999999999999999999999999864 34566788899999999999999
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 044044 273 KELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWR 352 (508)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 352 (508)
.+.|+++.+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...++++.+.
T Consensus 155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999998863 3357889999999999999999999999999874 446778899999999999999999999999877
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 044044 353 GVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYN 432 (508)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 432 (508)
. +.+..++..+...|.+.|++++|.+.++++.+.+ +.+..+|..++.++.+.|++++|+..|+++.+.. +.+..++.
T Consensus 233 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 309 (388)
T 1w3b_A 233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLN 309 (388)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 4 2358889999999999999999999999999875 5578899999999999999999999999999874 45788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccC
Q 044044 433 TLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELN 497 (508)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 497 (508)
.++..+...|++++|++.++++.+. .+.+...+..+..+|.+.|++++|.+.|+++.+ +.|+
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~ 371 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPT 371 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 9999999999999999999999986 344688999999999999999999999999986 4554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=256.90 Aligned_cols=206 Identities=17% Similarity=0.207 Sum_probs=155.3
Q ss_pred HHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC---------hh
Q 044044 271 KAKELFLKMKDENINPDV-VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGK---------MD 340 (508)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 340 (508)
.+..+.+++.+.+....+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 345555666666655443 35777888888888888888888888888888888888888888877654 56
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 341 KASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044044 421 SKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKS 476 (508)
Q Consensus 421 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 476 (508)
+.|+.||..||+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888888888888888888777654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.98 E-value=5.8e-31 Score=253.58 Aligned_cols=188 Identities=14% Similarity=0.171 Sum_probs=156.6
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC---------HHHHHHHHHHHHHcCCCCCHH
Q 044044 254 VTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYAND---------WNEAKRLFIEMMDQGVQPDVV 324 (508)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~ 324 (508)
..++.+|++|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. +++|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35677788888888888888888888888888888888888888876554 677888888888888888888
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYC 404 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (508)
||+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 044044 405 KNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI 441 (508)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 441 (508)
+.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888777653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-25 Score=214.35 Aligned_cols=349 Identities=12% Similarity=0.042 Sum_probs=275.6
Q ss_pred HHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHH
Q 044044 88 NEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGR 167 (508)
Q Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 167 (508)
..+...+.+++..+|. +...+..++..+.+.|++++|+.+|+++.+.. +.+...+..+..++...|++++|...+++
T Consensus 9 ~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMA--DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp --------------CH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccccHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3455566666666665 88899999999999999999999999998763 55788999999999999999999999999
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCH---hhHHHH------------HHHHHhcCChHHHH
Q 044044 168 ILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDV---FTYNTL------------INGLCRTGHTIVAL 232 (508)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~ 232 (508)
+++.+ +.+..++..++.+|.+.|++++|...|+++.... +.+. ..+..+ ...+...|++++|+
T Consensus 86 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 86 VIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 98875 4467889999999999999999999999998764 2234 555555 44588999999999
Q ss_pred HHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 044044 233 NLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFI 312 (508)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 312 (508)
..|+++.... +.+...+..++.+|.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|+..|+
T Consensus 164 ~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 164 AFLDKILEVC-------VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp HHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhC-------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999864 5578899999999999999999999999998753 3468899999999999999999999999
Q ss_pred HHHHcCCCCCHHhHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHcCCCHHH
Q 044044 313 EMMDQGVQPDVVTFSVI------------MDELCKNGKMDKASRLLELMIWRGVNPN----TYTYNTLIDGYCLTDKIDH 376 (508)
Q Consensus 313 ~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 376 (508)
++.+.. +.+...+..+ ...+.+.|++++|...++.+.+.... + ...+..+..++.+.|++++
T Consensus 236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHH
Confidence 998763 3344445444 78889999999999999999876322 2 3478888899999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH------------HHhcC--
Q 044044 377 ARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLG------------LFEIH-- 442 (508)
Q Consensus 377 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~------------~~~~g-- 442 (508)
|...++++.+.. +.+...|..++.+|...|++++|...++++.+..+. +...+..+..+ |...|
T Consensus 314 A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 314 AIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 999999988764 557889999999999999999999999999986332 45566665533 33333
Q ss_pred ---CHHHHHHHHHH
Q 044044 443 ---QVERALKLFDE 453 (508)
Q Consensus 443 ---~~~~a~~~~~~ 453 (508)
+.+++.+.+++
T Consensus 392 ~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 392 RNAKKQEIIKAYRK 405 (450)
T ss_dssp TTCCTTHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 45566766665
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-25 Score=217.34 Aligned_cols=409 Identities=12% Similarity=0.006 Sum_probs=323.3
Q ss_pred hhccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 74 CKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFC 153 (508)
Q Consensus 74 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (508)
....|..++..|++++|+..|+++++..| +..+|..++.++.+.|++++|+..++++.+.+ +.+...+..+..++.
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34556778889999999999999999874 67899999999999999999999999998864 556788999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHh------------------------------
Q 044044 154 KMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKH------------------------------ 203 (508)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------------------------ 203 (508)
..|++++|...|+++...+. ++......++..+........+.+.+..+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999988753 34444444444333322222222222111
Q ss_pred -----hhcCC---------CCCHhhHHHHHHHHHh---cCChHHHHHHHHHHHh-----C--CCCCCccccCCHhHHHHH
Q 044044 204 -----RVFAC---------EPDVFTYNTLINGLCR---TGHTIVALNLFEEMAN-----G--NGEFGVVCKPNTVTYNTI 259 (508)
Q Consensus 204 -----~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~l 259 (508)
..... +.+...+......+.. .|++++|+.+|+++.. . .+......+.+...+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 00000 1124455555555554 8999999999999988 3 110000002346688889
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCh
Q 044044 260 IDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKM 339 (508)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 339 (508)
+..+...|++++|...|+++.+... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 9999999999999999999988643 38888999999999999999999999998864 44667888999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 340 DKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEM 419 (508)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (508)
++|...++.+.+... .+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999998753 367788999999999999999999999998864 556788999999999999999999999999
Q ss_pred HHCCCC-CC----HhHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 420 LSKGIK-PT----VVTYNTLFLGLFE---IHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 420 ~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.+.... ++ ...+..+..++.. .|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|+++.+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 875222 11 3388999999999 999999999999999863 34678889999999999999999999999997
Q ss_pred cC
Q 044044 492 SK 493 (508)
Q Consensus 492 ~g 493 (508)
..
T Consensus 478 ~~ 479 (514)
T 2gw1_A 478 LA 479 (514)
T ss_dssp HC
T ss_pred hc
Confidence 53
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-25 Score=215.35 Aligned_cols=367 Identities=9% Similarity=-0.050 Sum_probs=289.2
Q ss_pred cCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 044044 77 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMG 156 (508)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 156 (508)
.|..+...|++++|+..|+.+++.+|. +..+|..++.++...|++++|+..|+++.+.+ +++......++..+....
T Consensus 45 la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 121 (514)
T 2gw1_A 45 LSACYVSVGDLKKVVEMSTKALELKPD--YSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQ 121 (514)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccChH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHH
Confidence 345567789999999999999999887 88899999999999999999999999999875 334444444443333222
Q ss_pred CcchHHHHH-----------------------------------HHHHhCCC---------CCCHHhHHHHHHHHHh---
Q 044044 157 RVSHGFVVL-----------------------------------GRILRSCF---------TPNAVTFTSLIKGLCA--- 189 (508)
Q Consensus 157 ~~~~a~~~~-----------------------------------~~~~~~~~---------~~~~~~~~~l~~~~~~--- 189 (508)
....+.+.+ ..+..... +.+...+..+...+..
T Consensus 122 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (514)
T 2gw1_A 122 AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRS 201 (514)
T ss_dssp HHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhh
Confidence 111111111 11111000 1124444555554554
Q ss_pred cCCHHHHHHHHHHhhh-----cCC--------CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHH
Q 044044 190 ESRIMEAAALFTKHRV-----FAC--------EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTY 256 (508)
Q Consensus 190 ~g~~~~A~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (508)
.|++++|+..|+++.. ... +.+..++..+...+...|++++|+..|+++.... |+...+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~ 273 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--------PRVNSY 273 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--------CCHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------ccHHHH
Confidence 8999999999999887 311 2235678889999999999999999999999865 338889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 044044 257 NTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKN 336 (508)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 336 (508)
..++.++...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 274 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 274 IYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHc
Confidence 999999999999999999999998863 3467789999999999999999999999999874 34567888899999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---cCC
Q 044044 337 GKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCM-HD----VVSYNTLINWYCK---NKD 408 (508)
Q Consensus 337 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~ 408 (508)
|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.... ++ ...|..++..+.. .|+
T Consensus 352 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 430 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430 (514)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH
T ss_pred CCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC
Confidence 99999999999998874 335778899999999999999999999998765311 11 3488899999999 999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 409 VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH 458 (508)
Q Consensus 409 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (508)
+++|...++++.+... .+..++..+..++...|++++|.+.|+++.+..
T Consensus 431 ~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 431 FIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 9999999999998643 367788999999999999999999999999863
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-24 Score=213.15 Aligned_cols=398 Identities=11% Similarity=0.031 Sum_probs=311.8
Q ss_pred hccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 044044 75 KSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCK 154 (508)
Q Consensus 75 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (508)
...|..+...|++++|+..|+++++..|. +..+|..++.++.+.|++++|++.|+++.+.+ +.+...+..+..++..
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIELDPN--EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence 34455566788999999999999999987 88999999999999999999999999998875 5578889999999999
Q ss_pred cCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcC------CCCCHh---------------
Q 044044 155 MGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFA------CEPDVF--------------- 213 (508)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~--------------- 213 (508)
.|++++|...++ ..... |+ .....+..+...+...+|...++++.... ..|+..
T Consensus 106 ~g~~~~A~~~~~-~~~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLS-VLSLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHH-HHhcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 999999999996 44332 22 12222334455566677888888775431 011111
Q ss_pred ---------------hHHHHHHHHHh--------cCChHHHHHHHHHHHhCCCCCCccccCC-------HhHHHHHHHHH
Q 044044 214 ---------------TYNTLINGLCR--------TGHTIVALNLFEEMANGNGEFGVVCKPN-------TVTYNTIIDGL 263 (508)
Q Consensus 214 ---------------~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~ 263 (508)
....+...+.. .|++++|+.+|+++.... +.+ ..++..+...+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-------TVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-------CCcchhhHHHHHHHHHHHHHH
Confidence 22222222222 248899999999999865 223 23567777888
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 044044 264 CKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKAS 343 (508)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 343 (508)
...|++++|...|+++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999886 4557888999999999999999999999998874 456788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 344 RLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKG 423 (508)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 423 (508)
..++.+.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 331 ~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 99999998753 357789999999999999999999999998875 5667889999999999999999999999988752
Q ss_pred C-----CCCHhHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 424 I-----KPTVVTYNTLFLGLFEI----------HQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRA 488 (508)
Q Consensus 424 ~-----~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 488 (508)
. ......+..+..++... |++++|+..++++.+.. +.+...+..+..+|.+.|++++|.+.|++
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1 11222345556777777 99999999999999863 34678899999999999999999999999
Q ss_pred HHHcC
Q 044044 489 IRDSK 493 (508)
Q Consensus 489 m~~~g 493 (508)
+.+..
T Consensus 488 al~~~ 492 (537)
T 3fp2_A 488 SAILA 492 (537)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 98753
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-24 Score=204.78 Aligned_cols=349 Identities=12% Similarity=0.036 Sum_probs=281.5
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 044044 126 VLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRV 205 (508)
Q Consensus 126 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 205 (508)
+...+.++.... +.+...+..+...+.+.|++++|+.+|+++.+.. +.+..++..++.++...|++++|+..|+++..
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 334444444432 5577889999999999999999999999998763 45788999999999999999999999999998
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCH---hHHHHH------------HHHHHccCCHH
Q 044044 206 FACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT---VTYNTI------------IDGLCKEGFVD 270 (508)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~ 270 (508)
.+ +.+..++..++.+|...|++++|+..|+++.... +.+. ..+..+ ...+...|+++
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-------PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 75 4468899999999999999999999999999865 3334 555555 44588999999
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 044044 271 KAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMI 350 (508)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 350 (508)
+|...|+++.+.. +.+...+..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+.
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998763 4477889999999999999999999999998763 4578899999999999999999999999999
Q ss_pred HcCCCCCHHhHHHH------------HHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 044044 351 WRGVNPNTYTYNTL------------IDGYCLTDKIDHARKLFVSMESNGCMHD----VVSYNTLINWYCKNKDVEEALS 414 (508)
Q Consensus 351 ~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 414 (508)
+... .+...+..+ +..+.+.|++++|...|+++.+.. +.+ ...|..++.++.+.|++++|+.
T Consensus 239 ~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 7632 245555544 788999999999999999998864 223 4578889999999999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHhcC-----
Q 044044 415 LYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDG------------LCKSG----- 477 (508)
Q Consensus 415 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~------------~~~~g----- 477 (508)
.++++.+.. +.+..+|..++.+|...|++++|.+.++++.+.. +.+...+..+..+ |...|
T Consensus 317 ~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 394 (450)
T 2y4t_A 317 VCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence 999998863 3368899999999999999999999999999853 2356666666633 33344
Q ss_pred CHHHHHHHHHHHH
Q 044044 478 FVLEALELFRAIR 490 (508)
Q Consensus 478 ~~~~A~~~~~~m~ 490 (508)
+.+++.+.|+++.
T Consensus 395 ~~~~~~~~y~~~~ 407 (450)
T 2y4t_A 395 KKQEIIKAYRKLA 407 (450)
T ss_dssp CTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5677888888743
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-19 Score=174.94 Aligned_cols=352 Identities=12% Similarity=0.058 Sum_probs=238.2
Q ss_pred CcccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCCcchHHHHHHHHHhCCCCCCH
Q 044044 106 PVSSFNILFGCLAK----NKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCK----MGRVSHGFVVLGRILRSCFTPNA 177 (508)
Q Consensus 106 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 177 (508)
+..++..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55666666666666 677777777777777654 45566666666766 677777777777776654 45
Q ss_pred HhHHHHHHHHHh----cCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCccc
Q 044044 178 VTFTSLIKGLCA----ESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCR----TGHTIVALNLFEEMANGNGEFGVVC 249 (508)
Q Consensus 178 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 249 (508)
..+..|...|.. .+++++|+..|++....| +...+..+...|.. .+++++|+++|++..+.+
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~------- 181 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG------- 181 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------
Confidence 566666666666 667777777777776654 55666666666665 667777777777776643
Q ss_pred cCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCC
Q 044044 250 KPNTVTYNTIIDGLCK----EGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQP 321 (508)
Q Consensus 250 ~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~ 321 (508)
+...+..+...|.. .+++++|.++|++..+.+ +...+..+...|.. .+++++|..+|++..+.+
T Consensus 182 --~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 253 (490)
T 2xm6_A 182 --NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--- 253 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---
T ss_pred --CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 45666667766666 677777777777776654 45566666666664 667777777777776654
Q ss_pred CHHhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCCCC
Q 044044 322 DVVTFSVIMDELCK----NGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLT-----DKIDHARKLFVSMESNGCMHD 392 (508)
Q Consensus 322 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~ 392 (508)
+...+..+...+.. .++.++|...|+...+.| +...+..+...|... ++.++|...+++..+.+ +
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~ 327 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---D 327 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---C
Confidence 34455556666666 677777777777776553 445566666666665 67777777777777654 4
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 044044 393 VVSYNTLINWYCKNK---DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE----IHQVERALKLFDEMRRNHVAADTYT 465 (508)
Q Consensus 393 ~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 465 (508)
...+..+...|...| ++++|+++|++..+.+ +...+..|...|.. .+++++|.++|++..+.+ +...
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a 401 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAA 401 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHH
Confidence 556666666666655 6777777777777653 55666677777766 677777777777777654 4566
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 044044 466 YNNFIDGLCK----SGFVLEALELFRAIRDSK 493 (508)
Q Consensus 466 ~~~li~~~~~----~g~~~~A~~~~~~m~~~g 493 (508)
+..|...|.+ .+++++|...|++..+.+
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 6667777766 677777777777777655
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-21 Score=177.60 Aligned_cols=302 Identities=13% Similarity=0.049 Sum_probs=179.1
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 044044 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKG 186 (508)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (508)
...+..++..+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3455666666777777777777777776643 3456666667777777777777777777766653 3355666777777
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCC--CCHhhHHHH------------HHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC
Q 044044 187 LCAESRIMEAAALFTKHRVFACE--PDVFTYNTL------------INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN 252 (508)
Q Consensus 187 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 252 (508)
+...|++++|...|+++...... .+...+..+ ...+...|++++|+++++++.... +.+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~ 153 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-------VWD 153 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCc
Confidence 77777777777777776655210 133333333 567778888888888888887764 456
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH---
Q 044044 253 TVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVI--- 329 (508)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--- 329 (508)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH
Confidence 6778888888888888888888888887753 3466777778888888888888888888877653 2223322211
Q ss_pred ---------HHHHHhcCChhHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 044044 330 ---------MDELCKNGKMDKASRLLELMIWRGVNPNT----YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSY 396 (508)
Q Consensus 330 ---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 396 (508)
...+.+.|++++|...++.+.+.... +. ..+..+..++...|++++|...++++.+.. +.+...|
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 309 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHH
Confidence 33344444444444444444443211 11 112223334444444444444444444332 2234444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 397 NTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
..++.++...|++++|...|+++.+
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444444444444444444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-20 Score=174.85 Aligned_cols=303 Identities=11% Similarity=0.025 Sum_probs=206.6
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHH
Q 044044 141 DIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLIN 220 (508)
Q Consensus 141 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 220 (508)
|...+..+...+...|++++|...++++++.. +.+..++..+...+...|++++|+..|+++.... +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678888899999999999999999998864 4568899999999999999999999999998874 446788999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCcccc---CCHhHHHHH------------HHHHHccCCHHHHHHHHHHHhhCCCC
Q 044044 221 GLCRTGHTIVALNLFEEMANGNGEFGVVCK---PNTVTYNTI------------IDGLCKEGFVDKAKELFLKMKDENIN 285 (508)
Q Consensus 221 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~ 285 (508)
.+...|++++|+..|+++.... + .+...+..+ ...+...|++++|.+.++++.+.. +
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~ 151 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-------PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-V 151 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHcCChHHHHHHHHHHHhcC-------CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C
Confidence 9999999999999999999864 2 244455544 466667777777777777776642 3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHH--
Q 044044 286 PDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNT-- 363 (508)
Q Consensus 286 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 363 (508)
.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.... +...+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~ 229 (359)
T 3ieg_A 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYK 229 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHH
Confidence 355666667777777777777777777776653 445566666777777777777777777776655321 2222221
Q ss_pred ----------HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 044044 364 ----------LIDGYCLTDKIDHARKLFVSMESNGCMHDVV----SYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVV 429 (508)
Q Consensus 364 ----------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 429 (508)
+...+.+.|++++|...++++.+.. +.+.. .+..+..++...|++++|+..++++.+.. +.+..
T Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 307 (359)
T 3ieg_A 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVN 307 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHH
Confidence 1344555666666666666655543 12221 23334555556666666666666655542 12455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
++..+..++...|++++|.+.|+++.+.
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5555666666666666666666666554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-21 Score=189.86 Aligned_cols=384 Identities=11% Similarity=0.074 Sum_probs=290.2
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 044044 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKG 186 (508)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (508)
...|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++.+.|++++|++.++++++.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567888899999999999999999999874 5678899999999999999999999999998875 4578889999999
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHh------------
Q 044044 187 LCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV------------ 254 (508)
Q Consensus 187 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~------------ 254 (508)
+...|++++|+..|+.+ .. .|+. ....+..+...+...+|...++.+....+.......|+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 99999999999999743 22 2221 2223445555666788888888886642111110112211
Q ss_pred ------------------HHHHHHHHHHc--------cCCHHHHHHHHHHHhhCCCCCC-------hhhHHHHHHHHHhc
Q 044044 255 ------------------TYNTIIDGLCK--------EGFVDKAKELFLKMKDENINPD-------VVTYTSVIRGFCYA 301 (508)
Q Consensus 255 ------------------~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~ 301 (508)
....+...+.. .|++++|..+|+++.+.... + ..++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhc
Confidence 22222222222 24789999999999876322 2 23466677788889
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHH
Q 044044 302 NDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLF 381 (508)
Q Consensus 302 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 381 (508)
|++++|...++++.+. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...+
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999986 4557888889999999999999999999999875 336888999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---
Q 044044 382 VSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH--- 458 (508)
Q Consensus 382 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--- 458 (508)
+++.+.. +.+...|..+..++...|++++|+..++++.+... .+...+..+...+...|++++|++.++++.+..
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 9998875 45678899999999999999999999999998743 356788999999999999999999999987642
Q ss_pred --CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCccCHHHHHHH
Q 044044 459 --VAADTYTYNNFIDGLCKS----------GFVLEALELFRAIRDSKYELNIVSYNCL 504 (508)
Q Consensus 459 --~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l 504 (508)
.......+..+...+.+. |++++|...|+++.+.. ..+...|..+
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l 468 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGL 468 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 112233345556778888 99999999999998753 2233444443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.6e-19 Score=172.32 Aligned_cols=340 Identities=12% Similarity=0.044 Sum_probs=294.6
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAK----NKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCK---- 154 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 154 (508)
..++++.|+..|+.+.+.+ +..++..|...|.. .+++++|+..|++..+.| +...+..+...|..
T Consensus 55 ~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 55 TTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 4689999999999998863 67788999999998 999999999999999875 66777788888888
Q ss_pred cCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHh----cC
Q 044044 155 MGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCA----ESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCR----TG 226 (508)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 226 (508)
.+++++|...|++..+.| +...+..|...|.. .++.++|++.|++..+.| +...+..+...|.. .+
T Consensus 128 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 201 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVER 201 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCc
Confidence 789999999999998875 67788888888887 789999999999998864 78888999999988 89
Q ss_pred ChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh--
Q 044044 227 HTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCK----EGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCY-- 300 (508)
Q Consensus 227 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 300 (508)
++++|+++|++..+.+ +...+..+...|.. .+++++|.++|++..+.+ +...+..+...|..
T Consensus 202 ~~~~A~~~~~~a~~~~---------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~ 269 (490)
T 2xm6_A 202 NDAISAQWYRKSATSG---------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGL 269 (490)
T ss_dssp CHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCC
Confidence 9999999999998765 56778888888886 789999999999998864 56677777777877
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCC-
Q 044044 301 --ANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKN-----GKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTD- 372 (508)
Q Consensus 301 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 372 (508)
.+++++|+.+|++..+.| +...+..+...|... +++++|...++...+.+ +...+..+...|...|
T Consensus 270 ~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 270 AGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGS 343 (490)
T ss_dssp TSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCC
Confidence 899999999999998765 566777788888887 89999999999999875 5567778888887766
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cC
Q 044044 373 --KIDHARKLFVSMESNGCMHDVVSYNTLINWYCK----NKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE----IH 442 (508)
Q Consensus 373 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 442 (508)
+.++|.+.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..|...|.. .+
T Consensus 344 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp HHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred cccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCC
Confidence 7899999999999874 78889999999998 899999999999999975 57788889999988 89
Q ss_pred CHHHHHHHHHHHHHCCC
Q 044044 443 QVERALKLFDEMRRNHV 459 (508)
Q Consensus 443 ~~~~a~~~~~~~~~~~~ 459 (508)
+.++|..+|++..+.+.
T Consensus 418 d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 418 DYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 99999999999998763
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-20 Score=170.46 Aligned_cols=293 Identities=13% Similarity=0.005 Sum_probs=212.0
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCH
Q 044044 174 TPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT 253 (508)
Q Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 253 (508)
+.+...+..++..+...|++++|+++|+++.... +.+...+..++..+...|++++|..+++++.... +.+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~ 90 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-------PSNP 90 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTST
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCH
Confidence 4455666677777777788888888888777654 3355666667777777888888888888877754 3456
Q ss_pred hHHHHHHHHHHccC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 044044 254 VTYNTIIDGLCKEG-FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDE 332 (508)
Q Consensus 254 ~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (508)
..|..+...+...| ++++|.+.|+++.+.. +.+...|..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 168 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLE 168 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHH
Confidence 67777777788888 7888888888877653 2346677777778888888888888888877753 2344556667777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHH
Q 044044 333 LCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNG--------CMHDVVSYNTLINWYC 404 (508)
Q Consensus 333 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~ 404 (508)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. .+.+...+..++.++.
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~ 247 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH
Confidence 888888888888888887663 3356777778888888888888888887776531 1334567888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCH
Q 044044 405 KNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGL-CKSGFV 479 (508)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~ 479 (508)
..|++++|+..++++.+.... +...+..+..++...|++++|.+.++++.+.. +.+...+..+..++ ...|+.
T Consensus 248 ~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 248 KLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 888888888888888876432 56778888888888888888888888887753 33666777777766 455554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-20 Score=170.48 Aligned_cols=286 Identities=11% Similarity=-0.002 Sum_probs=150.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHh
Q 044044 145 HSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCR 224 (508)
Q Consensus 145 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 224 (508)
+..+...+...|++++|.++++++.+.. +.+...+..++..+...|++++|..+++++.... +.+..+|..+...+..
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 3344444444444444444444444332 2223333444444445555555555555544432 2234445555555555
Q ss_pred cC-ChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 044044 225 TG-HTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYAND 303 (508)
Q Consensus 225 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 303 (508)
.| ++++|+..|+++.... +.+...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+
T Consensus 103 ~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLE-------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTC-------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred hhhhHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 55 5555555555555443 2234445555555555555555555555554432 1133444445555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC--------CCCCHHhHHHHHHHHHcCCCHH
Q 044044 304 WNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRG--------VNPNTYTYNTLIDGYCLTDKID 375 (508)
Q Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~ 375 (508)
+++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. .+....++..+...+...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 555555555555442 3344555555555666666666666665555431 1223456666666666777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-HhcCC
Q 044044 376 HARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGL-FEIHQ 443 (508)
Q Consensus 376 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~ 443 (508)
+|...++++.+.. +.+...|..+..++...|++++|...++++.+... .+...+..+..++ ...|+
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCc
Confidence 7777776666553 34556666677777777777777777776666432 2455555565555 34444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-18 Score=166.72 Aligned_cols=397 Identities=13% Similarity=0.066 Sum_probs=295.1
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHhcCCcchHH
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINC-FCKMGRVSHGF 162 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~ 162 (508)
.|+++.|+.+|+.+++..|. +...|..++..+.+.|++++|..+|+++++. .|+...|...+.. ....|+.+.|.
T Consensus 25 ~~~~~~a~~~~e~al~~~P~--~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPS--SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred hCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHH
Confidence 47899999999999999987 8899999999999999999999999999986 4688888877753 34568888877
Q ss_pred H----HHHHHHh-CCCC-CCHHhHHHHHHHHHh---------cCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHH-----
Q 044044 163 V----VLGRILR-SCFT-PNAVTFTSLIKGLCA---------ESRIMEAAALFTKHRVFACEPDVFTYNTLINGL----- 222 (508)
Q Consensus 163 ~----~~~~~~~-~~~~-~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----- 222 (508)
+ +|++.+. .|.. .+...|...+....+ .|++++|..+|++............|.......
T Consensus 101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch
Confidence 6 7777654 2443 356778887776654 689999999999988731111123343322211
Q ss_pred --------HhcCChHHHHHHHHHHH------hCCCCCCccccCC--------HhHHHHHHHHHHcc----CCH----HHH
Q 044044 223 --------CRTGHTIVALNLFEEMA------NGNGEFGVVCKPN--------TVTYNTIIDGLCKE----GFV----DKA 272 (508)
Q Consensus 223 --------~~~g~~~~A~~~~~~~~------~~~~~~~~~~~~~--------~~~~~~l~~~~~~~----g~~----~~a 272 (508)
...+++..|..+++.+. +... ..++|+ ...|...+...... ++. +.+
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~---~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a 257 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNA---PSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV 257 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSS---CCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccc---ccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHH
Confidence 13456777887777632 2110 002333 24566555443322 232 477
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 044044 273 KELFLKMKDENINPDVVTYTSVIRGFCY-------ANDWN-------EAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGK 338 (508)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 338 (508)
..+|+++... .+.+...|...+..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|+
T Consensus 258 ~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~ 336 (530)
T 2ooe_A 258 MFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 336 (530)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence 8899998875 24467888888887775 68877 899999999863234567889999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHH
Q 044044 339 MDKASRLLELMIWRGVNPN--TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINW-YCKNKDVEEALSL 415 (508)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~ 415 (508)
+++|..+|+.+++. .|+ ...|..++..+.+.|++++|.++|++..+.. +.+...|...+.. +...|+.++|..+
T Consensus 337 ~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 337 YEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp HHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 99999999999986 443 3588888999999999999999999998863 2333334333322 3468999999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 416 YSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHV-AA--DTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 416 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
|++.++..+ .+...|..++..+.+.|+.++|..+|++....+. .| ....|...+......|+.+.+..+++++.+.
T Consensus 414 ~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 414 FELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999988632 3678899999999999999999999999998632 22 2458888888889999999999999998753
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-18 Score=167.88 Aligned_cols=394 Identities=12% Similarity=0.054 Sum_probs=289.4
Q ss_pred HHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 044044 94 FDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCF 173 (508)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 173 (508)
|+..++.+|. +..+|..++. +.+.|++++|..+|+++.+. .+.+...|..++..+.+.|++++|..+|++++...
T Consensus 2 le~al~~~P~--~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~- 76 (530)
T 2ooe_A 2 AEKKLEENPY--DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV- 76 (530)
T ss_dssp HHHHHHHCTT--CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-
T ss_pred hhhHhhhCCC--CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Confidence 6677788887 8999999998 47899999999999999986 36678889999999999999999999999999874
Q ss_pred CCCHHhHHHHHHHH-HhcCCHHHHHH----HHHHhhhc-CCC-CCHhhHHHHHHHHHh---------cCChHHHHHHHHH
Q 044044 174 TPNAVTFTSLIKGL-CAESRIMEAAA----LFTKHRVF-ACE-PDVFTYNTLINGLCR---------TGHTIVALNLFEE 237 (508)
Q Consensus 174 ~~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~ 237 (508)
|+...|..++... ...|+.++|.+ +|++.... |.. .+...|...+..... .|++++|..+|++
T Consensus 77 -p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 77 -LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 5777888777533 35577777665 77766543 433 346678877776654 6899999999999
Q ss_pred HHhCCCCCCccccCCHhHHHHHHHHH-------------HccCCHHHHHHHHHHH------hhCC---CCCC--------
Q 044044 238 MANGNGEFGVVCKPNTVTYNTIIDGL-------------CKEGFVDKAKELFLKM------KDEN---INPD-------- 287 (508)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~g~~~~a~~~~~~~------~~~~---~~~~-------- 287 (508)
..... .......|....... .+.++++.|..++.+. .+.. ++|+
T Consensus 156 al~~P------~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 156 GCVNP------MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HTTSC------CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHhch------hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 98732 112233444332211 1345677888777663 2221 2333
Q ss_pred hhhHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-------cCChh-------HHHHH
Q 044044 288 VVTYTSVIRGFCYA----NDW----NEAKRLFIEMMDQGVQPDVVTFSVIMDELCK-------NGKMD-------KASRL 345 (508)
Q Consensus 288 ~~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~ 345 (508)
...|...+...... ++. +.+..+|++.+.. .+.+...|..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 23455544332221 232 4778899998876 34567788888887775 79987 89999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 044044 346 LELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDV-VSYNTLINWYCKNKDVEEALSLYSEMLSKGI 424 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 424 (508)
+++.++.-.+.+...|..++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.|++++|.++|++..+...
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~ 387 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 387 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 9999863223358899999999999999999999999999863 2243 5899999999999999999999999998632
Q ss_pred CCCHhHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CccC--HHH
Q 044044 425 KPTVVTYNTLFLG-LFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSK-YELN--IVS 500 (508)
Q Consensus 425 ~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~ 500 (508)
.+...|...+.. +...|+.++|.++|++..+.. +.+...|..++..+.+.|+.++|..+|++.+..+ ..|+ ...
T Consensus 388 -~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 388 -TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp -CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred -CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 233333333322 346899999999999998763 3468899999999999999999999999999763 3343 345
Q ss_pred HHH
Q 044044 501 YNC 503 (508)
Q Consensus 501 ~~~ 503 (508)
|..
T Consensus 466 w~~ 468 (530)
T 2ooe_A 466 WAR 468 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.2e-20 Score=172.31 Aligned_cols=266 Identities=12% Similarity=0.010 Sum_probs=179.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 044044 214 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 293 (508)
Q Consensus 214 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 293 (508)
.+..+...+.+.|++++|+..|+++.... +.+...+..++.++...|++++|.+.|+++.+.. +.+..++..
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ 137 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMA 137 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 34445555555555555555555555442 2344455555555555555555555555554432 223444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH---------------HHHHHHHhcCChhHHHHHHHHHHHcCCCC-C
Q 044044 294 VIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFS---------------VIMDELCKNGKMDKASRLLELMIWRGVNP-N 357 (508)
Q Consensus 294 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~ 357 (508)
+...+...|++++|...++++..... .+...+. ..+..+...|++++|...++.+.+..... +
T Consensus 138 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 216 (368)
T 1fch_A 138 LAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID 216 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCccc
Confidence 55555555555555555555554321 1111111 02333348889999999999988764322 4
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLG 437 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 437 (508)
..++..+...|...|++++|...++++.+.. +.+...|..++..+...|++++|+..++++.+.. +.+..++..+..+
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 294 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGIS 294 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 7788888999999999999999999988764 5578889999999999999999999999988864 3367788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 438 LFEIHQVERALKLFDEMRRNHVA----------ADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
+...|++++|...++++.+.... .....|..+..+|...|++++|..++++.+
T Consensus 295 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 295 CINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 99999999999999988764211 126789999999999999999998876443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-20 Score=172.75 Aligned_cols=308 Identities=11% Similarity=0.005 Sum_probs=177.5
Q ss_pred CCCCCCChHHHHH-HHHHhHHcCCCCC--CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 044044 80 GDINLITPNEALC-IFDYMLRMHPSPP--PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMG 156 (508)
Q Consensus 80 ~~~~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 156 (508)
.+.-.|++++|+. .|+++++..|..| +...+..++..+.+.|++++|+..|+++.+.. +.+...+..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 4445678888988 8888877766533 45678888889999999999999999998864 557778888888899999
Q ss_pred CcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 044044 157 RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFE 236 (508)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 236 (508)
++++|...++++.+.. +.+..++..+...+...|++++|+..++++.... +.+...+..+... .
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~------- 176 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------A------- 176 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------h-------
Confidence 9999999999888764 4467788888888888899999999998888764 2222222211000 0
Q ss_pred HHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 237 EMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINP-DVVTYTSVIRGFCYANDWNEAKRLFIEMM 315 (508)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 315 (508)
.. ..+ ...+..+...+ ..|++++|...|+++.+..... +..++..+...+...|++++|+..++++.
T Consensus 177 ---~~-------~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 177 ---GG-------AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp --------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---hh-------hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00 000 00111111122 4455555555555554432110 24445555555555555555555555555
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC------
Q 044044 316 DQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGC------ 389 (508)
Q Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------ 389 (508)
+.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+..+|.+.|++++|...++++.+...
T Consensus 245 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 322 (368)
T 1fch_A 245 SVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 322 (368)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred HhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcc
Confidence 432 2234455555555555556666655555555442 22345555566666666666666666655544320
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 390 ----MHDVVSYNTLINWYCKNKDVEEALSLYSE 418 (508)
Q Consensus 390 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 418 (508)
+....+|..+..+|...|++++|..++++
T Consensus 323 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 323 GEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp --CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred ccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 11155666666666667776666666553
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.9e-20 Score=171.08 Aligned_cols=266 Identities=9% Similarity=-0.018 Sum_probs=197.3
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhh
Q 044044 211 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVT 290 (508)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 290 (508)
+...+..+...+.+.|++++|+.+|+++.... +.+...|..++.++...|++++|.+.|+++.+.. +.+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 135 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKA 135 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 34457777777777777777777777777654 4456677777777777777777777777776652 235667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCH
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPD-----------VVTFSVIMDELCKNGKMDKASRLLELMIWRGVN-PNT 358 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 358 (508)
+..+...|...|++++|+..++++.+.. |+ ...+..+...+...|++++|...++++.+.... .+.
T Consensus 136 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 213 (365)
T 4eqf_A 136 LMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP 213 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH
Confidence 7777777777788888887777776642 21 123334577888889999999999998887432 157
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGL 438 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (508)
.++..+...|...|++++|...++++.+.. +.+..+|..++.+|...|++++|+..|+++++... .+..++..+..+|
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHH
Confidence 788889999999999999999999988764 56788899999999999999999999999988642 2577889999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 439 FEIHQVERALKLFDEMRRNHVA-----------ADTYTYNNFIDGLCKSGFVLEALELFRA 488 (508)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~ 488 (508)
...|++++|...|+++.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999988764211 1367889999999999999988887655
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=166.21 Aligned_cols=282 Identities=12% Similarity=0.086 Sum_probs=135.1
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
..|++++|.++++++ ++..+|..++.++.+.|++++|++.|.+. +|...|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 446799999999988 23459999999999999999999999653 57779999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988777664 4567889999999999999999998885 467789999999999999999999999975
Q ss_pred CCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044044 243 GEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPD 322 (508)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 322 (508)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..+
T Consensus 149 -----------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ 206 (449)
T 1b89_A 149 -----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 206 (449)
T ss_dssp -----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTC
T ss_pred -----------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhC
Confidence 36899999999999999999999998 27899999999999999999996665542 234
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCCC------CHH
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLT--DKIDHARKLFVSMESNGCMH------DVV 394 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~ 394 (508)
+.-...++..|.+.|.+++|..+++..+... +-....|+.+..+|++- +++.+..+.|..- .+++| +..
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHH
Confidence 4445578899999999999999999998654 44577888887777764 3444444444321 12222 455
Q ss_pred HHHHHHHHHHhcCCHHHHHHH
Q 044044 395 SYNTLINWYCKNKDVEEALSL 415 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~ 415 (508)
.|..++..|.+.++++.|...
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHH
Confidence 689999999999999998874
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-17 Score=162.48 Aligned_cols=374 Identities=11% Similarity=-0.045 Sum_probs=253.0
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHhC--------CCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhC-----
Q 044044 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSA--------GLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRS----- 171 (508)
Q Consensus 105 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 171 (508)
.....||.+..++...|++++|++.|++..+. ..+....+|..+..+|...|++++|...++++.+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 45678999999999999999999999987542 11234678999999999999999999999887652
Q ss_pred C--CCCCHHhHHHHHHHHHhc--CCHHHHHHHHHHhhhcCCCCCHhhHHHHHHH---HHhcCChHHHHHHHHHHHhCCCC
Q 044044 172 C--FTPNAVTFTSLIKGLCAE--SRIMEAAALFTKHRVFACEPDVFTYNTLING---LCRTGHTIVALNLFEEMANGNGE 244 (508)
Q Consensus 172 ~--~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~ 244 (508)
+ ......++..+..++... +++++|+..|++..... +.+...+..+..+ +...++.++|++.+++....+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--
Confidence 1 112345666666555544 57999999999998874 3355566555554 345688899999999988864
Q ss_pred CCccccCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044044 245 FGVVCKPNTVTYNTIIDGLCK----EGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 320 (508)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 320 (508)
+.+...+..+...+.. .|++++|.+.+++..... +.+...+..+...|...|++++|+..+++..+.. +
T Consensus 206 -----p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 278 (472)
T 4g1t_A 206 -----PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-P 278 (472)
T ss_dssp -----SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred -----CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-C
Confidence 3456666666655544 467889999999988763 3467788899999999999999999999998863 4
Q ss_pred CCHHhHHHHHHHHHhc-------------------CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHH
Q 044044 321 PDVVTFSVIMDELCKN-------------------GKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLF 381 (508)
Q Consensus 321 ~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 381 (508)
.+..++..+..+|... +..+.|...++.+.+.. +.+...+..+...|...|++++|.+.|
T Consensus 279 ~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 357 (472)
T 4g1t_A 279 NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYF 357 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHH
Confidence 4566666666555332 23567778888877664 235667888999999999999999999
Q ss_pred HHHHhCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 382 VSMESNGCMHDV--VSYNTLIN-WYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH 458 (508)
Q Consensus 382 ~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (508)
+++.+....+.. ..+..+.. .....|++++|+..|++.++. .|+..... +....+.+++++..+.+
T Consensus 358 ~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l~~~ 426 (472)
T 4g1t_A 358 QKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRLSKN 426 (472)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHHHhC
Confidence 999887532221 12233332 345789999999999999986 34432222 22344556666666553
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CccCHHHH
Q 044044 459 VAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSK-YELNIVSY 501 (508)
Q Consensus 459 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~ 501 (508)
+.+..+|..+..+|...|++++|++.|++.++.| ..|+..+|
T Consensus 427 -p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 427 -GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp -C-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 4477889999999999999999999999999765 34665554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.7e-19 Score=164.66 Aligned_cols=268 Identities=12% Similarity=-0.042 Sum_probs=200.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhH
Q 044044 176 NAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVT 255 (508)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 255 (508)
+...+..+...+.+.|++++|+..|+++.... +.+..+|..+...+...|++++|+..|+++.... +.+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~ 135 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-------PNNLKA 135 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCCHHH
Confidence 34456777777777788888888887777664 4466777778888888888888888888877754 345677
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCC---------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHh
Q 044044 256 YNTIIDGLCKEGFVDKAKELFLKMKDENIN---------PDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ-PDVVT 325 (508)
Q Consensus 256 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~ 325 (508)
+..++.+|...|++++|.+.|+++.+.... .....+..+...+...|++++|+..++++.+.... .+..+
T Consensus 136 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 215 (365)
T 4eqf_A 136 LMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL 215 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHH
Confidence 777888888888888888888777654210 01223344577888899999999999999886421 15778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044044 326 FSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK 405 (508)
Q Consensus 326 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (508)
+..+...+...|++++|...++++++.. +.+..++..+..+|...|++++|...|+++.+.. +.+..+|..++.+|..
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHH
Confidence 8889999999999999999999998874 3368889999999999999999999999988874 5568889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCC-----------CCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 406 NKDVEEALSLYSEMLSKGIK-----------PTVVTYNTLFLGLFEIHQVERALKLFDE 453 (508)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 453 (508)
.|++++|...|+++.+.... .+..+|..+..++...|+.+.+.++.++
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999998875211 1357789999999999999998887754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-18 Score=160.03 Aligned_cols=266 Identities=12% Similarity=-0.029 Sum_probs=194.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHH
Q 044044 213 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 292 (508)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 292 (508)
..+..+...+...|++++|+.+|+++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 93 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHA 93 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHH
Confidence 445566666666777777777777766653 3355666666677777777777777777766542 23455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH--------------HH-HHHhcCChhHHHHHHHHHHHcCCCCC
Q 044044 293 SVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVI--------------MD-ELCKNGKMDKASRLLELMIWRGVNPN 357 (508)
Q Consensus 293 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~ 357 (508)
.+...+...|++++|...++++.+.. +.+...+..+ .. .+...|++++|...++.+.+... .+
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~ 171 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-ND 171 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CC
Confidence 66667777777777777777766542 1122222222 22 36677888999999998887643 36
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLG 437 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 437 (508)
...+..+...+...|++++|...++++.+.. +.+...|..++..+...|++++|...++++.+... .+..++..+..+
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 249 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 7888888899999999999999999888764 55788889999999999999999999999888643 367788899999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 438 LFEIHQVERALKLFDEMRRNHVAA-----------DTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
+...|++++|.+.++++.+..... +...|..+..++.+.|++++|..++++.+
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999999888753221 46788889999999999999999887654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-18 Score=158.70 Aligned_cols=265 Identities=9% Similarity=-0.034 Sum_probs=191.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHH
Q 044044 179 TFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNT 258 (508)
Q Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (508)
.+..+...+...|++++|+.+|+++.... +.+..++..+...+...|++++|...++++.... +.+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~ 94 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------PKDIAVHAA 94 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------cCCHHHHHH
Confidence 34555556666666666666666665543 3355566666666666666666666666666643 334556666
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 044044 259 IIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSV--------------IR-GFCYANDWNEAKRLFIEMMDQGVQPDV 323 (508)
Q Consensus 259 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~ 323 (508)
+...+...|++++|.+.++++.+.... +...+..+ .. .+...|++++|...++++.+.. +.+.
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 172 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDA 172 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCH
Confidence 666666667777777666666654211 22222222 22 3677788999999999988764 4467
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044044 324 VTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWY 403 (508)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (508)
..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 788888889999999999999999988764 3357788889999999999999999999988764 55788899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-----------CHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 404 CKNKDVEEALSLYSEMLSKGIKP-----------TVVTYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
...|++++|.+.++++.+..... +..++..+..++...|++++|..++++..
T Consensus 251 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999988763321 46788899999999999999999886543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-17 Score=150.54 Aligned_cols=272 Identities=11% Similarity=0.040 Sum_probs=187.2
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHH
Q 044044 187 LCAESRIMEAAALFTKHRVFACEPD--VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLC 264 (508)
Q Consensus 187 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (508)
....|++..|+..+++.... .|+ ......+..+|...|++++|+..++. . .+|+..++..+...+.
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-------~~~~~~a~~~la~~~~ 76 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-------SAPELQAVRMFAEYLA 76 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-------SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-------CChhHHHHHHHHHHHc
Confidence 44557888888877766543 232 23445667788888888888875543 1 2456777777888888
Q ss_pred ccCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 044044 265 KEGFVDKAKELFLKMKDENINP-DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKAS 343 (508)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 343 (508)
..|+.++|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888888877665434 455566666778888888888888766 356677777888888888888888
Q ss_pred HHHHHHHHcCCCCCHHh---HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 344 RLLELMIWRGVNPNTYT---YNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 344 ~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
+.++.+.+.. |+... ....+..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|+..+++++
T Consensus 151 ~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 151 KELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888887763 34221 1223344455688888888888887763 6678888888888888888888888888888
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044044 421 SKGIKPTVVTYNTLFLGLFEIHQVER-ALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALEL 485 (508)
Q Consensus 421 ~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 485 (508)
+..+. +..++..++..+...|+.++ +.++++++.+.+ |+... +.+...+.+.++++..-
T Consensus 228 ~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 228 DKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHHH
Confidence 76432 67778888888888888765 567888887753 33322 22334455555555443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=160.25 Aligned_cols=282 Identities=13% Similarity=0.112 Sum_probs=137.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 044044 119 KNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAA 198 (508)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 198 (508)
+.|++++|.+.++++. +..+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6788999999999983 2358999999999999999999999763 577799999999999999999999
Q ss_pred HHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHH
Q 044044 199 LFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLK 278 (508)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 278 (508)
+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|..+|..
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88877764 5567889999999999999999888774 25667999999999999999999999997
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 044044 279 MKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNT 358 (508)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 358 (508)
+ ..|..++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +..++
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~a 207 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHA 207 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCH
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCH
Confidence 7 37999999999999999999999988 2789999999999999999999655443 22344
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHhH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKN--KDVEEALSLYSEMLSKGIKP------TVVT 430 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~ 430 (508)
.-...++..|.+.|.+++|..+++...... +-....|+.+..+|++- ++..+.++.|..-+ +++| +...
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~ 284 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHH
Confidence 445678899999999999999999998776 66788899988888765 34555555554221 2332 4667
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 044044 431 YNTLFLGLFEIHQVERALKL 450 (508)
Q Consensus 431 ~~~l~~~~~~~g~~~~a~~~ 450 (508)
|..+...|...++++.|...
T Consensus 285 w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHH
Confidence 88899999999999988774
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-17 Score=149.63 Aligned_cols=247 Identities=12% Similarity=0.103 Sum_probs=117.5
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHH
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVV 164 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 164 (508)
|+++.|+..++.+....|. ........+.++|...|+++.|+..++.. -+|+..++..+...+...++.++|++.
T Consensus 13 g~y~~ai~~~~~~~~~~p~-~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 13 GSYQQCINEAQRVKPSSPE-RDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp TCHHHHHHHHHHSCCCSHH-HHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCch-hhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 5555555555544333332 11233344455555555555555544331 134444555555555555555555555
Q ss_pred HHHHHhCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044044 165 LGRILRSCF-TPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 243 (508)
Q Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 243 (508)
+++++..+. +.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|+++....
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 160 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD- 160 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 555554432 22334444444555555555555555554 2344455555555555555555555555555432
Q ss_pred CCCccccCCHhH---HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044044 244 EFGVVCKPNTVT---YNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 320 (508)
Q Consensus 244 ~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 320 (508)
|+... ...++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|+++.+.. +
T Consensus 161 -------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 161 -------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp -------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred -------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 22111 111222223335555555555555444 23344445555555555555555555555554432 2
Q ss_pred CCHHhHHHHHHHHHhcCChhH-HHHHHHHHHHc
Q 044044 321 PDVVTFSVIMDELCKNGKMDK-ASRLLELMIWR 352 (508)
Q Consensus 321 ~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 352 (508)
.+..++..++..+...|+.++ +.++++++.+.
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 344444445555555555443 34444544443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.9e-17 Score=157.00 Aligned_cols=365 Identities=10% Similarity=-0.067 Sum_probs=246.8
Q ss_pred CCCCCCCCChHHHHHHHHHhHHcC-------CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCC-------CCCCHH
Q 044044 78 GQGDINLITPNEALCIFDYMLRMH-------PSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAG-------LFPDIY 143 (508)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~ 143 (508)
|..+...|++++|++.|+++++.. ..+....+|+.+..+|...|++++|...+++..+.. ......
T Consensus 58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~ 137 (472)
T 4g1t_A 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE 137 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence 344456789999999999987641 122256689999999999999999999999875421 112345
Q ss_pred hHHHHHHHHHhc--CCcchHHHHHHHHHhCCCCCCHHhHHHHHHH---HHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHH
Q 044044 144 THSILINCFCKM--GRVSHGFVVLGRILRSCFTPNAVTFTSLIKG---LCAESRIMEAAALFTKHRVFACEPDVFTYNTL 218 (508)
Q Consensus 144 ~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 218 (508)
++.....++... +++++|+..|+++++.. +.+...+..+... +...++.++|++.+++..... +.+..++..+
T Consensus 138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l 215 (472)
T 4g1t_A 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLL 215 (472)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHH
Confidence 666666666554 46899999999998864 3355566555554 345678889999999988774 4456666666
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 044044 219 INGLCR----TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSV 294 (508)
Q Consensus 219 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 294 (508)
...+.. .|++++|.+++++..... +.+...+..+...|...|++++|.+.++++.+.. +.+..++..+
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~al~~~-------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 216 ALKLHKMREEGEEEGEGEKLVEEALEKA-------PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHCC------CHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 655544 567889999999998864 5567889999999999999999999999998763 3356666666
Q ss_pred HHHHHhc-------------------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 044044 295 IRGFCYA-------------------NDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVN 355 (508)
Q Consensus 295 ~~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 355 (508)
...|... +.++.|...+++..+.. +.+...+..+...+...|++++|...|+++++....
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 6555322 23567888888887763 345567888999999999999999999999987544
Q ss_pred CCHH--hHHHHHH-HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 044044 356 PNTY--TYNTLID-GYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYN 432 (508)
Q Consensus 356 ~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 432 (508)
+... .+..+.. .+...|+.++|+..|++..+.. |+..... +..+.+.+++++.++.. +.+..+|.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~ 434 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQKIAKMRLSKN-GADSEALH 434 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 3321 2333332 3457899999999999998864 4432222 22344556666666654 33678999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHH
Q 044044 433 TLFLGLFEIHQVERALKLFDEMRRNH-VAADTYT 465 (508)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~ 465 (508)
.+..+|...|++++|++.|++..+.+ ..|+...
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 99999999999999999999999864 2344433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=172.21 Aligned_cols=135 Identities=12% Similarity=0.204 Sum_probs=107.7
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 044044 357 NTYTYNTLIDGYCLTDKIDHARKLFVSMES---NGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNT 433 (508)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 433 (508)
-..+|+++|++|++.|++++|.++|++|.+ .|+.||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 466888888888888999888888877654 46788888899888888888888899999988888888888888988
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcc
Q 044044 434 LFLGLFEIHQ-VERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYEL 496 (508)
Q Consensus 434 l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 496 (508)
+|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. ..++..+++ ..++.|
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p 264 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSL 264 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCC
Confidence 8888888887 478888888888888888888888888766554 334444444 334444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.9e-15 Score=151.30 Aligned_cols=352 Identities=14% Similarity=0.141 Sum_probs=188.3
Q ss_pred CCCCCChHHHHHHHHHhHHcCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcc
Q 044044 81 DINLITPNEALCIFDYMLRMHP-SPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVS 159 (508)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 159 (508)
+...|.+.+|+++++++.-... ...+...-+.++.+..+. +..+..+..++.... + ...+...+...|.++
T Consensus 995 f~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 995 FMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFE 1066 (1630)
T ss_pred HHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHH
Confidence 4467899999999999984422 012344555555544443 333333333333211 0 122334444455555
Q ss_pred hHHHHHHHHHhCC---------------------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHH
Q 044044 160 HGFVVLGRILRSC---------------------FTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTL 218 (508)
Q Consensus 160 ~a~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 218 (508)
+|..+|++..... -..+..+|..+..++...|++++|++.|.+. .|...|..+
T Consensus 1067 EAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eV 1140 (1630)
T 1xi4_A 1067 EAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEV 1140 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHH
Confidence 5555544431000 0013444555555555555555555555432 244445555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 044044 219 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGF 298 (508)
Q Consensus 219 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 298 (508)
+..+.+.|++++|+++|....+.. ++....+.++.+|++.+++++...+. + .++...|..+...|
T Consensus 1141 a~~~~~lGkyEEAIeyL~mArk~~--------~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1141 VQAANTSGNWEELVKYLQMARKKA--------RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRC 1205 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhc--------ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHH
Confidence 555555555555555555544432 11112223555555555554322221 1 12333444455555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHH
Q 044044 299 CYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHAR 378 (508)
Q Consensus 299 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 378 (508)
...|++++|..+|... ..|..++.++.+.|++++|.+.+++.. +..+|..+..+|...|++..|.
T Consensus 1206 e~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred HhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHH
Confidence 5555555555555543 245555555555555555555555441 4455555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc--CCHHHHHHHHHHHHH
Q 044044 379 KLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI--HQVERALKLFDEMRR 456 (508)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~ 456 (508)
.....+ ..+...+..++..|...|.+++|+.+++..+... +-+...|+-|...+.+. ++..++.++|..-.
T Consensus 1271 ~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri- 1343 (1630)
T 1xi4_A 1271 MCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV- 1343 (1630)
T ss_pred HHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 544332 2355567778888888888888888888877654 33445666666666543 34555555554322
Q ss_pred CCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 044044 457 NHVAA------DTYTYNNFIDGLCKSGFVLEALE 484 (508)
Q Consensus 457 ~~~~~------~~~~~~~li~~~~~~g~~~~A~~ 484 (508)
++++ +...|..++-.|.+.|+++.|..
T Consensus 1344 -ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1344 -NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred -ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 2222 56679999999999999999884
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-14 Score=146.75 Aligned_cols=323 Identities=13% Similarity=0.167 Sum_probs=237.6
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGL--FPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSL 183 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (508)
++.--...+..|...|.+.+|++++++..-.+- .-+....+.++.+..+. +..+..+...+.... ....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHH
Confidence 445556677788888999999999998874321 12344555666666665 455555655554321 13346
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHH
Q 044044 184 IKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGL 263 (508)
Q Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 263 (508)
...+...|.+++|..+|++.. ......+.++. ..|++++|.++.++.. +..+|..+..++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------------~p~vWsqLAKAq 1115 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------------EPAVWSQLAKAQ 1115 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------------CHHHHHHHHHHH
Confidence 677788899999999998853 12222233322 6788899988888642 367888999999
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 044044 264 CKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKAS 343 (508)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 343 (508)
...|++++|.+.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.+++++..
T Consensus 1116 l~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1116 LQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred HhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHH
Confidence 9999999999999664 267788889999999999999999998877754 33333445888888888887544
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 344 RLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKG 423 (508)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 423 (508)
.+ ++ .++...|..+...|...|++++|..+|..+ ..|..++.++.+.|++++|++.+++.
T Consensus 1188 ~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA---- 1247 (1630)
T 1xi4_A 1188 EF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA---- 1247 (1630)
T ss_pred HH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh----
Confidence 33 22 335566777888999999999999999875 36888999999999999999999876
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 424 IKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.+..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++..+.
T Consensus 1248 --~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1248 --NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred --CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2567888888888888888888887654 334666777888899999999999999987763
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-16 Score=150.18 Aligned_cols=371 Identities=9% Similarity=-0.023 Sum_probs=248.3
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC---
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHY---DTVLSLFKRLNSAGLFPDIYTHSILINCFCKMG--- 156 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 156 (508)
..|++++|+.+|.++.+.+ +..++..+...+...|+. ++|+..|++..+. +...+..+...+...+
T Consensus 15 ~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHHTC--CC
T ss_pred hCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCC
Confidence 3478999999999998764 555677777778888888 8999999998853 5566777777565555
Q ss_pred --CcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHH---HHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHH
Q 044044 157 --RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIM---EAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVA 231 (508)
Q Consensus 157 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 231 (508)
++++|...|++..+.|. ...+..|...|...+..+ ++.+.+.+....| +...+..+...|...+.++++
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGG
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccC
Confidence 67899999999988763 336777777777665543 4555555555544 566777888888888866555
Q ss_pred HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC---CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc----CCH
Q 044044 232 LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG---FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYA----NDW 304 (508)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~ 304 (508)
.+....+...- ...+...+..+...|...| ++++|+++|++..+.|. ++...+..+...|... +++
T Consensus 161 ~~~a~~~~~~a------~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 161 LDDVERICKAA------LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp HHHHHHHHHHH------TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCH
T ss_pred HHHHHHHHHHH------HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCH
Confidence 55433332221 1223448888999999999 99999999999998863 3555556677777555 799
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHH-H--HhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCC-----CHHH
Q 044044 305 NEAKRLFIEMMDQGVQPDVVTFSVIMDE-L--CKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTD-----KIDH 376 (508)
Q Consensus 305 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~ 376 (508)
++|+.+|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..|..+|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999987 43 55566666666 4 46899999999999999876 6777778888777 45 9999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHH
Q 044044 377 ARKLFVSMESNGCMHDVVSYNTLINWYCK----NKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE----IHQVERAL 448 (508)
Q Consensus 377 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 448 (508)
|...|++.. . -+...+..+...|.. ..++++|..+|++..+.| +......|...|.. ..+.++|.
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 999999887 4 477888888888876 449999999999999876 34455677777764 56899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 449 KLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
.+|+...+.|.. +.......+......++.++|..+.++-.
T Consensus 379 ~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 379 VFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999999988643 22222222222233345667777776654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-16 Score=149.64 Aligned_cols=350 Identities=13% Similarity=0.016 Sum_probs=242.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCc---chHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 112 ILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRV---SHGFVVLGRILRSCFTPNAVTFTSLIKGLC 188 (508)
Q Consensus 112 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (508)
.+...+.+.|++++|.++|++..+.| +...+..+...+...|+. ++|...|++..+. +...+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35677788999999999999998876 333455566666777887 8999999998754 5666777777555
Q ss_pred hcC-----CHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCccccCCHhHHHHHH
Q 044044 189 AES-----RIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTI---VALNLFEEMANGNGEFGVVCKPNTVTYNTII 260 (508)
Q Consensus 189 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (508)
..+ +.++|+..|++....| +...+..|...|...+..+ ++.+.+......+ +...+..+.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---------~~~a~~~Lg 148 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---------YPEAGLAQV 148 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---------CTTHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---------CHHHHHHHH
Confidence 554 7889999999998865 3447788888888766544 4555555555433 456777888
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-
Q 044044 261 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYAN---DWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKN- 336 (508)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 336 (508)
..|...+.++++......+.+.-...++..+..+...|...| +.++|++.|++..+.| .++...+..+...|...
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGG
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC
Confidence 888888866555554333322211224448888888999999 9999999999999987 44555556677777554
Q ss_pred ---CChhHHHHHHHHHHHcCCCCCHHhHHHHHHH-H--HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---
Q 044044 337 ---GKMDKASRLLELMIWRGVNPNTYTYNTLIDG-Y--CLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNK--- 407 (508)
Q Consensus 337 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 407 (508)
+++++|...|+... .| +...+..+... + ...+++++|.+.|++..+.| +...+..+...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 69999999999987 33 56677777776 4 56899999999999999876 7888888888887 55
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 044044 408 --DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE----IHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCK----SG 477 (508)
Q Consensus 408 --~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 477 (508)
++++|+..|++.. .| +...+..|...|.. ..++++|.++|++..+.|. ......|...|.. ..
T Consensus 300 ~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp CCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCC
T ss_pred CCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCC
Confidence 9999999999988 43 66777888877776 4499999999999998763 3345556666654 45
Q ss_pred CHHHHHHHHHHHHHcCCcc
Q 044044 478 FVLEALELFRAIRDSKYEL 496 (508)
Q Consensus 478 ~~~~A~~~~~~m~~~g~~p 496 (508)
+.++|..+|+...+.|...
T Consensus 373 d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp CHHHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHHHHHHHHCCCHH
Confidence 8999999999999887543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.1e-16 Score=137.04 Aligned_cols=227 Identities=14% Similarity=0.080 Sum_probs=196.7
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHh
Q 044044 252 NTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV--QPD----VVT 325 (508)
Q Consensus 252 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~ 325 (508)
....+..+...+...|++++|...|+++.+.. .+...+..+...+...|++++|+..++++.+... .++ ...
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678889999999999999999999998876 6888999999999999999999999999887521 112 578
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044044 326 FSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK 405 (508)
Q Consensus 326 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (508)
+..+...+...|++++|...++.+.+.. |+. ..+...|++++|...++++.... +.+...+..++..+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 8889999999999999999999999863 443 34666788999999999998874 4466788899999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044044 406 NKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALEL 485 (508)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 485 (508)
.|++++|+..++++.+... .+..++..+..++...|++++|++.++++.+.. +.+...|..+..++.+.|++++|.+.
T Consensus 152 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999998743 367889999999999999999999999999864 44688899999999999999999999
Q ss_pred HHHHHHc
Q 044044 486 FRAIRDS 492 (508)
Q Consensus 486 ~~~m~~~ 492 (508)
|++..+.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999854
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.6e-18 Score=168.66 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=121.7
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHH---cCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044044 321 PDVVTFSVIMDELCKNGKMDKASRLLELMIW---RGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYN 397 (508)
Q Consensus 321 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (508)
.-..||+++|++|++.|++++|.++|.+|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456899999999999999999999988764 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 044044 398 TLINWYCKNKD-VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAAD------TYTYNNFI 470 (508)
Q Consensus 398 ~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li 470 (508)
++|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+ +..++.++++ ..+..|+ ..+-..|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99999999987 47899999999999999999999988865544 3444444444 2334443 33344455
Q ss_pred HHHHhcC
Q 044044 471 DGLCKSG 477 (508)
Q Consensus 471 ~~~~~~g 477 (508)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5555444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-15 Score=134.38 Aligned_cols=232 Identities=13% Similarity=0.024 Sum_probs=166.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHH
Q 044044 177 AVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTY 256 (508)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (508)
...+..+...+...|++++|+..|++..... .+..+|..+..++...|++++|+..++++....+......+.....+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567778888899999999999999988876 67888999999999999999999999998875411000000015788
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 044044 257 NTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKN 336 (508)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 336 (508)
..+...+...|++++|.+.|+++.+. .|+. ..+...|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88999999999999999999998875 3342 34556677888888888877652 23445666667777777
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044044 337 GKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLY 416 (508)
Q Consensus 337 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (508)
|++++|...++.+++.. +.+...+..+...+...|++++|...++++.+.. +.+...|..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 77777777777777653 2246666666777777777777777777666653 445666666666777777777777777
Q ss_pred HHHHHC
Q 044044 417 SEMLSK 422 (508)
Q Consensus 417 ~~~~~~ 422 (508)
+++.+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-15 Score=130.64 Aligned_cols=198 Identities=13% Similarity=0.029 Sum_probs=108.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 044044 287 DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLID 366 (508)
Q Consensus 287 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 366 (508)
+...+..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|...++++++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33444444444455555555555555544432 2234444444445555555555555555554442 113444444455
Q ss_pred HHHcC-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 044044 367 GYCLT-----------DKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLF 435 (508)
Q Consensus 367 ~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 435 (508)
++... |++++|...+++..+.. +.+...|..+..++...|++++|+..|+++++.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 77777777777776654 4456667777777777777777777777777665 4666777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 436 LGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 436 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
.++...|++++|+..|+++.+.. +.+...+..+...+.+.|++++|++.|++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 77777777777777777777653 3356666677777777777777777776553
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-15 Score=130.12 Aligned_cols=193 Identities=15% Similarity=0.024 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHH
Q 044044 213 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 292 (508)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 292 (508)
..+..+...+.+.|++++|+..|++....+ +.+...+..+..++.+.|++++|...|++..+.. +.+...+.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~ 77 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-------PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYM 77 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 334444444444444444444444444432 2233344444444444444444444444443331 11233333
Q ss_pred HHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhH
Q 044044 293 SVIRGFCYA-----------NDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTY 361 (508)
Q Consensus 293 ~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 361 (508)
.+...+... |++++|+..+++..+.. +.+...+..+..++...|++++|...++++++.. .+...+
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 333333333 44444444444444331 1223334444444444444444444444444433 233444
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044044 362 NTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYS 417 (508)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 417 (508)
..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++|+..++
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 444444444444444444444444332 2233344444444444444444444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=6.4e-14 Score=125.24 Aligned_cols=225 Identities=13% Similarity=0.007 Sum_probs=201.1
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhH
Q 044044 251 PNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQPDVVTF 326 (508)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 326 (508)
-+...+..+...+...|++++|.+.|++..+.+ +...+..+...+.. .+++++|+..|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 367788889999999999999999999998843 56788888999999 999999999999999876 67888
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 044044 327 SVIMDELCK----NGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL----TDKIDHARKLFVSMESNGCMHDVVSYNT 398 (508)
Q Consensus 327 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 398 (508)
..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 889999999 999999999999999875 77889999999999 999999999999999875 6778888
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044044 399 LINWYCK----NKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE----IHQVERALKLFDEMRRNHVAADTYTYNNFI 470 (508)
Q Consensus 399 l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 470 (508)
+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|++.+++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 9999988 999999999999999874 56788889999999 999999999999999874 367788888
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcC
Q 044044 471 DGLCK----SGFVLEALELFRAIRDSK 493 (508)
Q Consensus 471 ~~~~~----~g~~~~A~~~~~~m~~~g 493 (508)
..|.+ .|++++|.+.|++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99998 999999999999999876
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.1e-14 Score=124.96 Aligned_cols=224 Identities=14% Similarity=0.012 Sum_probs=132.3
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCC
Q 044044 211 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCK----EGFVDKAKELFLKMKDENINP 286 (508)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~ 286 (508)
+..++..+...+...|++++|+..|++..+.+ +...+..+...+.. .+++++|.+.|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---
Confidence 34455555555555666666666666555432 23445555555555 566666666666655543
Q ss_pred ChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCH
Q 044044 287 DVVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCK----NGKMDKASRLLELMIWRGVNPNT 358 (508)
Q Consensus 287 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 358 (508)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +.
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 146 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG 146 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence 44555555555555 666666666666665543 44555555566666 666666666666666553 44
Q ss_pred HhHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhH
Q 044044 359 YTYNTLIDGYCL----TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK----NKDVEEALSLYSEMLSKGIKPTVVT 430 (508)
Q Consensus 359 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~ 430 (508)
..+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 220 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGG 220 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHH
Confidence 455555555555 666666666666666553 45556666666666 666666666666666653 2455
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 044044 431 YNTLFLGLFE----IHQVERALKLFDEMRRNH 458 (508)
Q Consensus 431 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 458 (508)
+..+...|.. .+++++|.+.+++..+.+
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5566666666 666666766666666543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-14 Score=130.11 Aligned_cols=235 Identities=10% Similarity=0.016 Sum_probs=130.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC--hhh
Q 044044 213 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPD--VVT 290 (508)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~ 290 (508)
..+......+...|++++|+..|+++.... +.+...+..+..++...|++++|.+.++++.+....++ ...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 76 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSAD 76 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHH
Confidence 344455566666666777777766666653 23344666666666666777777766666665321111 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL 370 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (508)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++++++.. +.+...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH
Confidence 5566666666666666666666666542 2234455666666666666666666666665442 2234455555522223
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HhHHHHHHHHHHh
Q 044044 371 TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD---VEEALSLYSEMLSKG-IKPT------VVTYNTLFLGLFE 440 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~ 440 (508)
.+++++|.+.++++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ..+|..+...|..
T Consensus 155 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 346666666666665543 3345555555555555555 555666665555431 1122 1345555556666
Q ss_pred cCCHHHHHHHHHHHHHC
Q 044044 441 IHQVERALKLFDEMRRN 457 (508)
Q Consensus 441 ~g~~~~a~~~~~~~~~~ 457 (508)
.|++++|.+.++++.+.
T Consensus 234 ~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 234 NRDKVKADAAWKNILAL 250 (272)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 66666666666666554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-15 Score=136.40 Aligned_cols=227 Identities=9% Similarity=-0.089 Sum_probs=144.4
Q ss_pred CCCCCCCChHHHHHHHHHhHHcCCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 044044 79 QGDINLITPNEALCIFDYMLRMHPSP--PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMG 156 (508)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 156 (508)
......|++++|+..|+++++..+.. .+..+|..++..+...|++++|+..|+++.+.. +.+...+..+...+...|
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred eccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcc
Confidence 34455678888888888888764321 246677888888888888888888888887753 445677777777777788
Q ss_pred CcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 044044 157 RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFE 236 (508)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 236 (508)
++++|...++++++.. +.+..++..+...+...|++++|...|+++.... |+.......+..+...|++++|...++
T Consensus 92 ~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888888777777653 3355667777777777777777777777776652 333333333444455677777777776
Q ss_pred HHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 237 EMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINP---DVVTYTSVIRGFCYANDWNEAKRLFIE 313 (508)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~ 313 (508)
+..... +++...+. ++..+...++.++|.+.++++.+..... +...+..+...+...|++++|...|++
T Consensus 169 ~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 169 QHFEKS-------DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240 (275)
T ss_dssp HHHHHS-------CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcC-------CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 665543 23333333 5555666666666766666665431100 134455555555556666666666655
Q ss_pred HHHc
Q 044044 314 MMDQ 317 (508)
Q Consensus 314 ~~~~ 317 (508)
+.+.
T Consensus 241 al~~ 244 (275)
T 1xnf_A 241 AVAN 244 (275)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 5543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-14 Score=134.67 Aligned_cols=238 Identities=9% Similarity=-0.048 Sum_probs=194.6
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcch
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKH-YDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 160 (508)
...|++++|+..|+++++.+|. +..+|+.+..++...|+ +++|+..|+++++.. +-+...|..+..++...|++++
T Consensus 108 ~~~g~~~~Al~~~~~al~l~P~--~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~e 184 (382)
T 2h6f_A 108 QRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQ 184 (382)
T ss_dssp HHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHCCChHHHHHHHHHHHHhCcc--CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHH
Confidence 3567899999999999999988 88999999999999997 999999999999864 5578889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHh-cCChHHH-----HHH
Q 044044 161 GFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCR-TGHTIVA-----LNL 234 (508)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~ 234 (508)
|+..|+++++.. +.+...|..+..++.+.|++++|+..|++++... +.+..+|+.+..++.. .|..++| +..
T Consensus 185 Al~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~ 262 (382)
T 2h6f_A 185 ELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262 (382)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 999999999875 4578899999999999999999999999999875 4478899999999998 6665777 588
Q ss_pred HHHHHhCCCCCCccccCCHhHHHHHHHHHHccC--CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---------C
Q 044044 235 FEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG--FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYAN---------D 303 (508)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~ 303 (508)
|++....+ +.+...|+.+..++...| ++++|.+.+.++ +. .+.+...+..+...|.+.| .
T Consensus 263 ~~~Al~l~-------P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 263 TLEMIKLV-------PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHS-------TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHC-------CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 88888864 456788999999998888 689999999888 33 3446677888888888764 2
Q ss_pred HHHHHHHHHHH-HHcCCCCCHHhHHHHHHHHH
Q 044044 304 WNEAKRLFIEM-MDQGVQPDVVTFSVIMDELC 334 (508)
Q Consensus 304 ~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 334 (508)
.++|+++|+++ .+.. +.....|..+...+.
T Consensus 334 ~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 334 LNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 58899999988 5542 333445555554443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-14 Score=129.23 Aligned_cols=57 Identities=14% Similarity=0.295 Sum_probs=22.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHH
Q 044044 112 ILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRIL 169 (508)
Q Consensus 112 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 169 (508)
.....+...|++++|+..|+++.+.. +.+...+..+..++...|++++|++.++++.
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 64 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33344444444444444444444332 1122233333334444444444444444433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-14 Score=133.29 Aligned_cols=131 Identities=4% Similarity=-0.040 Sum_probs=57.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-cchHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 044044 108 SSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGR-VSHGFVVLGRILRSCFTPNAVTFTSLIKG 186 (508)
Q Consensus 108 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (508)
.+|..+..++...|++++|+..|+++++.. +-+...|..+..++...|+ +++|+..++++++.. +.+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 344444445555555555555555554432 2234444444444444443 444444444444432 1233444444444
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044044 187 LCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG 241 (508)
Q Consensus 187 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 241 (508)
+...|++++|+..|+++.... +.+..+|..+..++...|++++|+..|+++...
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 444444444444444444432 223344444444444444444444444444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.4e-14 Score=124.07 Aligned_cols=198 Identities=9% Similarity=-0.040 Sum_probs=104.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL 370 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (508)
+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 3344444444444444444444444432 2233444444555555555555555555554442 1234455555555555
Q ss_pred CCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 044044 371 TDKIDHARKLFVSMESNGC-MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALK 449 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 449 (508)
.|++++|.++++++.+.+. +.+...+..++..+...|++++|...++++.+... .+...+..++..+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555666555555554111 22344555555666666666666666666655432 245555666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 450 LFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666665542 234555556666666666666666666666543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=7.3e-15 Score=131.49 Aligned_cols=219 Identities=11% Similarity=0.014 Sum_probs=104.2
Q ss_pred CCHHHHHHHHHHhhhcCC---CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC
Q 044044 191 SRIMEAAALFTKHRVFAC---EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG 267 (508)
Q Consensus 191 g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 267 (508)
|++++|+..|+++..... +.+..++..+...+...|++++|+..|+++...+ +.+...|..++..+...|
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHcc
Confidence 455555555555554321 1123445555555555666666666665555543 234555555555555556
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 044044 268 FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLE 347 (508)
Q Consensus 268 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 347 (508)
++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. |+.......+..+...|++++|...+.
T Consensus 92 ~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6666666655555432 1234455555555555555555555555555432 222222223333344455555555555
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 348 LMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCM---HDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
...... +++...+ .++..+...++.++|...++++.+.... .+...|..++..|...|++++|...|+++.+
T Consensus 169 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 169 QHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444432 1122222 2344444445555555555544432100 0123444444445555555555555555444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.8e-14 Score=120.20 Aligned_cols=212 Identities=9% Similarity=-0.051 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 044044 289 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGY 368 (508)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (508)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 334444444455555555555555544432 2234445555555555555555555555555442 22445555556666
Q ss_pred HcC-CCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 044044 369 CLT-DKIDHARKLFVSMESNGC-MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVER 446 (508)
Q Consensus 369 ~~~-g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 446 (508)
... |++++|...++++.+... +.+...+..++.++...|++++|+..++++.+... .+...+..++.++...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHH
Confidence 666 666666666666655211 12245566666666666666666666666665432 245566666666667777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHHHHHHHH
Q 044044 447 ALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLI 505 (508)
Q Consensus 447 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 505 (508)
|.+.++++.+.....+...+..+...+...|+.++|..+++.+.+. .|+......++
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l 222 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHh
Confidence 7777766665432135555666666666677777777776666543 35444444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.66 E-value=8.9e-14 Score=122.64 Aligned_cols=199 Identities=14% Similarity=0.013 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHH
Q 044044 213 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 292 (508)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 292 (508)
..|..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 109 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-------PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLN 109 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHH
Confidence 445555566666666666666666665543 2345555666666666666666666666655442 22444555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcC
Q 044044 293 SVIRGFCYANDWNEAKRLFIEMMDQGVQP-DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLT 371 (508)
Q Consensus 293 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (508)
.+...+...|++++|.++++++.+.+..| +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc
Confidence 55555555556666655555555421122 23344444555555555555555555554442 11344444455555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 372 DKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 189 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp TCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555555555544432 33444444444555555555555555555544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=8.3e-15 Score=128.46 Aligned_cols=195 Identities=12% Similarity=0.015 Sum_probs=132.3
Q ss_pred ccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 044044 76 SSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKM 155 (508)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (508)
..|..+...|++++|+..|+++++..|. +...+..++..+...|++++|+..++++.+.. +.+...+..+...+...
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIEENKE--DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVK 104 (243)
T ss_dssp --------------CCTTHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHh
Confidence 4555667778888888888888887766 67788888888888888888888888887653 44667777777777788
Q ss_pred CCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 044044 156 GRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLF 235 (508)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 235 (508)
|++++|.+.++++.+.. +.+...+..+...+...|++++|+..++++.... +.+...+..+...+...|++++|+..|
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888887777653 3356667777777777777777777777776653 335666777777777777777777777
Q ss_pred HHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 236 EEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
+++.... +.+..++..+..++...|++++|.+.++++.+.
T Consensus 183 ~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 183 AAVTEQD-------PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHC-------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7776653 344566777777777777777777777777664
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-13 Score=117.88 Aligned_cols=59 Identities=10% Similarity=-0.066 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 181 TSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
..+...+...|++++|++.|+++.... +.+...+..+...+...|++++|.+.++++..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 70 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 333333334444444444444333322 12233333344444444444444444444333
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-12 Score=127.82 Aligned_cols=151 Identities=14% Similarity=0.101 Sum_probs=97.4
Q ss_pred hHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---cchHHH
Q 044044 87 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGR---VSHGFV 163 (508)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~ 163 (508)
..+.+..|+..+..+|. |...|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.++ .+.+.+
T Consensus 48 ~~d~i~~lE~~l~~np~--d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPT--DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCcC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 34456667777777776 8888888888887778888888888888775 35567777777777777777 788888
Q ss_pred HHHHHHhCC-CCCCHHhHHHHHHHHHhcCCH--------HHHHHHHHHhhh-cCC-CCC-HhhHHHHHHHHHh-------
Q 044044 164 VLGRILRSC-FTPNAVTFTSLIKGLCAESRI--------MEAAALFTKHRV-FAC-EPD-VFTYNTLINGLCR------- 224 (508)
Q Consensus 164 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~------- 224 (508)
+|++.+... .+|++..|...+....+.++. +...++|+.... .|. .++ ...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 888877653 136777777776655554443 233466666443 244 333 4566666654332
Q ss_pred --cCChHHHHHHHHHHHh
Q 044044 225 --TGHTIVALNLFEEMAN 240 (508)
Q Consensus 225 --~g~~~~A~~~~~~~~~ 240 (508)
.++++.+..+|+.+..
T Consensus 205 eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHHHHHHh
Confidence 3345667777777664
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-14 Score=125.73 Aligned_cols=27 Identities=15% Similarity=0.259 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
.+..+..++...|++++|...++++.+
T Consensus 195 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 195 AFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 333333334444444444444443333
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-14 Score=137.20 Aligned_cols=301 Identities=14% Similarity=0.063 Sum_probs=182.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC
Q 044044 177 AVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPD----VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN 252 (508)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 252 (508)
...+......+...|++++|+..|++....+ +.+ ..++..+...+...|++++|+..+++........+. .+..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~ 86 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-QLGE 86 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-cHHH
Confidence 3444455555666666666666666665543 112 234556666666666666666666655432100000 1112
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-CCC----hhhHHHHHHHHHhcCC--------------------HHHH
Q 044044 253 TVTYNTIIDGLCKEGFVDKAKELFLKMKDENI-NPD----VVTYTSVIRGFCYAND--------------------WNEA 307 (508)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a 307 (508)
..++..+...+...|++++|...+++..+... ..+ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44566666666777777777776666543200 001 3356666666777777 7777
Q ss_pred HHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHcCCCHHHH
Q 044044 308 KRLFIEMMDQ----GVQP-DVVTFSVIMDELCKNGKMDKASRLLELMIWRGV-NPN----TYTYNTLIDGYCLTDKIDHA 377 (508)
Q Consensus 308 ~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A 377 (508)
...+++..+. +..+ ...++..+...+...|++++|...++++.+... .++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7777665432 1111 123566677778888888888888877765311 111 23677777888888888888
Q ss_pred HHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHHhcCCHHHH
Q 044044 378 RKLFVSMESNGC-MHD----VVSYNTLINWYCKNKDVEEALSLYSEMLSKGIK-PT----VVTYNTLFLGLFEIHQVERA 447 (508)
Q Consensus 378 ~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a 447 (508)
...+++..+... ..+ ..++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 888887764310 011 456777888888889999999888887754111 11 45677888888899999999
Q ss_pred HHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCH
Q 044044 448 LKLFDEMRRN----HV-AADTYTYNNFIDGLCKSGFV 479 (508)
Q Consensus 448 ~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~ 479 (508)
.+.+++..+. +. .....++..+...+...|+.
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 9988887643 11 11244566677777777765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-14 Score=135.98 Aligned_cols=274 Identities=12% Similarity=0.025 Sum_probs=159.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHH
Q 044044 181 TSLIKGLCAESRIMEAAALFTKHRVFACEPDV----FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTY 256 (508)
Q Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (508)
..+...+...|++++|+..|+++...+ +.+. .+|..+...|...|++++|+..+++........+ ..+.....+
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~ 129 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN-DRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc-CchHHHHHH
Confidence 344455566666666666666666553 1122 3566666666777777777777766554310000 012234566
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhC----C-CCCChhhHHHHHHHHHhcCC-----------------HHHHHHHHHHH
Q 044044 257 NTIIDGLCKEGFVDKAKELFLKMKDE----N-INPDVVTYTSVIRGFCYAND-----------------WNEAKRLFIEM 314 (508)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~~ 314 (508)
..+...|...|++++|.+.++++.+. + .......+..+...|...|+ +++|+..+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 77777777778888777777776542 1 01123456666677777777 77777777665
Q ss_pred HHc----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 044044 315 MDQ----GVQP-DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVN-PN----TYTYNTLIDGYCLTDKIDHARKLFVSM 384 (508)
Q Consensus 315 ~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (508)
.+. +..+ ....+..+...+...|++++|...+++..+.... .+ ...+..+...|...|++++|...+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 432 1111 1235666666777777777777777766543110 01 225666667777777777777777666
Q ss_pred HhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 385 ESNGCM-----HDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGI-----KPTVVTYNTLFLGLFEIHQVERALKLFDEM 454 (508)
Q Consensus 385 ~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (508)
.+.... ....++..+...+...|++++|...+++.++... .....++..+...|...|++++|.+.+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 543100 1134566666777777777777777776654310 011235566666677777777777777666
Q ss_pred HH
Q 044044 455 RR 456 (508)
Q Consensus 455 ~~ 456 (508)
.+
T Consensus 370 l~ 371 (411)
T 4a1s_A 370 LQ 371 (411)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.4e-15 Score=139.15 Aligned_cols=274 Identities=12% Similarity=0.050 Sum_probs=211.7
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCH----hHHHHHHHHHHccCCHHHHHHHHHHHhhC----C
Q 044044 212 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT----VTYNTIIDGLCKEGFVDKAKELFLKMKDE----N 283 (508)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~ 283 (508)
...+..+...+...|++++|+..|+++.... +.+. ..+..+...+...|++++|.+.++++.+. +
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 120 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-------TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN 120 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-------ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3445567788899999999999999999865 2232 47888999999999999999999987653 1
Q ss_pred C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHhHHHHHHHHHhcCC-----------------hh
Q 044044 284 I-NPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GV-QPDVVTFSVIMDELCKNGK-----------------MD 340 (508)
Q Consensus 284 ~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~-----------------~~ 340 (508)
. ......+..+...|...|++++|...+++..+. +. .....++..+...+...|+ ++
T Consensus 121 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~ 200 (411)
T 4a1s_A 121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALT 200 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHH
Confidence 1 123467788889999999999999999987754 11 1224477888889999999 99
Q ss_pred HHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHH
Q 044044 341 KASRLLELMIWR----GVNP-NTYTYNTLIDGYCLTDKIDHARKLFVSMESNGC-MHD----VVSYNTLINWYCKNKDVE 410 (508)
Q Consensus 341 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~ 410 (508)
+|...+++..+. +..+ ...++..+...|...|++++|...+++..+... ..+ ...+..+...|...|+++
T Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHH
Confidence 999998887653 1111 245778888999999999999999998876410 012 237888999999999999
Q ss_pred HHHHHHHHHHHCCCC-----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCCHH
Q 044044 411 EALSLYSEMLSKGIK-----PTVVTYNTLFLGLFEIHQVERALKLFDEMRRN----H-VAADTYTYNNFIDGLCKSGFVL 480 (508)
Q Consensus 411 ~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~ 480 (508)
+|+..++++.+.... ....++..+...+...|++++|.+.+++..+. + .......+..+...|.+.|+++
T Consensus 281 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 360 (411)
T 4a1s_A 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE 360 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH
Confidence 999999988764111 12467888999999999999999999988753 1 1112447788899999999999
Q ss_pred HHHHHHHHHHHc
Q 044044 481 EALELFRAIRDS 492 (508)
Q Consensus 481 ~A~~~~~~m~~~ 492 (508)
+|.+.|++..+.
T Consensus 361 ~A~~~~~~al~~ 372 (411)
T 4a1s_A 361 RALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-14 Score=135.61 Aligned_cols=276 Identities=13% Similarity=0.061 Sum_probs=212.7
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC----HhHHHHHHHHHHccCCHHHHHHHHHHHhhC--
Q 044044 209 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN----TVTYNTIIDGLCKEGFVDKAKELFLKMKDE-- 282 (508)
Q Consensus 209 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 282 (508)
......+......+...|++++|+..|+++.... +.+ ...+..+...+...|++++|...++++...
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 78 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR 78 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3455667788889999999999999999999864 223 357888999999999999999999987542
Q ss_pred --CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHhcCC----------------
Q 044044 283 --NINP-DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV-QPD----VVTFSVIMDELCKNGK---------------- 338 (508)
Q Consensus 283 --~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~---------------- 338 (508)
+..+ ....+..+...+...|++++|...+++..+... ..+ ..++..+...+...|+
T Consensus 79 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 79 TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 2111 245677888899999999999999998875410 011 3477888889999999
Q ss_pred ----hhHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHH
Q 044044 339 ----MDKASRLLELMIWR----GVNP-NTYTYNTLIDGYCLTDKIDHARKLFVSMESNGC-MHD----VVSYNTLINWYC 404 (508)
Q Consensus 339 ----~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~ 404 (508)
+++|...++...+. +..+ ...++..+...|...|++++|...+++..+... .++ ..++..+...|.
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 238 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 238 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 99999998877653 1111 245678888999999999999999998765310 112 337888899999
Q ss_pred hcCCHHHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHH
Q 044044 405 KNKDVEEALSLYSEMLSKGIK-PT----VVTYNTLFLGLFEIHQVERALKLFDEMRRNHV-AAD----TYTYNNFIDGLC 474 (508)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~ 474 (508)
..|++++|...+++..+.... .+ ..++..+...+...|++++|.+.+++..+... ..+ ..++..+...|.
T Consensus 239 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 318 (406)
T 3sf4_A 239 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 999999999999998754111 11 55788899999999999999999998875311 112 557888999999
Q ss_pred hcCCHHHHHHHHHHHHH
Q 044044 475 KSGFVLEALELFRAIRD 491 (508)
Q Consensus 475 ~~g~~~~A~~~~~~m~~ 491 (508)
..|++++|.+.+++..+
T Consensus 319 ~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 319 ALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999999874
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-13 Score=121.23 Aligned_cols=219 Identities=12% Similarity=0.044 Sum_probs=153.5
Q ss_pred HHHHHHHHHhHHcCCCCCCcccHHHHHHHHHh-------cCCh-------hHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 88 NEALCIFDYMLRMHPSPPPVSSFNILFGCLAK-------NKHY-------DTVLSLFKRLNSAGLFPDIYTHSILINCFC 153 (508)
Q Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (508)
+.|+.+|++++...|. +...|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~--~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 7899999999999887 88899998888763 4776 788888888887311335667888888888
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHH-hcCChHHH
Q 044044 154 KMGRVSHGFVVLGRILRSCFTPNAV-TFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLC-RTGHTIVA 231 (508)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 231 (508)
+.|++++|.++|+++++... .+.. +|..++..+.+.|++++|..+|++..... +.+...|...+.... ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888877521 1233 67777777777788888888888777653 233444443333322 25777777
Q ss_pred HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC-CCC--ChhhHHHHHHHHHhcCCHHHHH
Q 044044 232 LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDEN-INP--DVVTYTSVIRGFCYANDWNEAK 308 (508)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~ 308 (508)
..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... .+| ....|..++....+.|+.+.|.
T Consensus 189 ~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 189 FKIFELGLKKY-------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp HHHHHHHHHHH-------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777653 3456677777777777777777777777777652 233 3456666677777777777777
Q ss_pred HHHHHHHHc
Q 044044 309 RLFIEMMDQ 317 (508)
Q Consensus 309 ~~~~~~~~~ 317 (508)
.+++++.+.
T Consensus 262 ~~~~~a~~~ 270 (308)
T 2ond_A 262 KVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777664
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-13 Score=127.79 Aligned_cols=232 Identities=8% Similarity=-0.073 Sum_probs=178.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC----CCHHhH
Q 044044 258 TIIDGLCKEGFVDKAKELFLKMKDE----NINP-DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG--VQ----PDVVTF 326 (508)
Q Consensus 258 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~----~~~~~~ 326 (508)
.....+...|++++|.+.|++..+. +-.+ ....+..+...|...|++++|...+++..+.- .. ....++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 3667788999999999999998764 1111 24678888999999999999999999987631 11 123478
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHcCCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 044044 327 SVIMDELCKNGKMDKASRLLELMIWRGVN-PN----TYTYNTLIDGYCLTDKIDHARKLFVSMES-----NGCMHDVVSY 396 (508)
Q Consensus 327 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 396 (508)
..+..+|...|++++|...++++++.... ++ ..++..+...|...|++++|...+++..+ ...+....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 88889999999999999999988754111 11 34788899999999999999999999877 3223456778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044044 397 NTLINWYCKNKDVEEALSLYSEMLSK----GIKPTVVTYNTLFLGLFEIHQ---VERALKLFDEMRRNHVAADTYTYNNF 469 (508)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l 469 (508)
..+...+...|++++|...+++..+. +-+.....+..+...+...|+ .++|+.++++... .+.....+..+
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~l 345 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHH
Confidence 99999999999999999999998764 111122345678888889999 7777777766521 12234467789
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 044044 470 IDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 470 i~~~~~~g~~~~A~~~~~~m~~ 491 (508)
...|...|++++|...|++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999874
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.4e-14 Score=127.99 Aligned_cols=279 Identities=14% Similarity=0.042 Sum_probs=143.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhH
Q 044044 180 FTSLIKGLCAESRIMEAAALFTKHRVFACEPD----VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVT 255 (508)
Q Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 255 (508)
+......+...|++++|+..|+++.... +.+ ...+..+...+...|++++|+..+++........+ ..+.....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG-DQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-ccHHHHHH
Confidence 3344555666677777777777766653 222 34566677777777777777777776554210000 01122446
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCC-CCC----hhhHHHHHHHHHhcCC--------------------HHHHHHH
Q 044044 256 YNTIIDGLCKEGFVDKAKELFLKMKDENI-NPD----VVTYTSVIRGFCYAND--------------------WNEAKRL 310 (508)
Q Consensus 256 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~ 310 (508)
+..+...+...|++++|.+.+++..+... ..+ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 66777777777788877777777644210 011 2355566666666666 6666666
Q ss_pred HHHHHHc----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044044 311 FIEMMDQ----GVQP-DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSME 385 (508)
Q Consensus 311 ~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (508)
+++.... +..+ ....+..+...+...|++++|...++++.+...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------------------------- 214 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK------------------------------- 214 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-------------------------------
Confidence 6554321 1000 112344444455555555555555544432200
Q ss_pred hCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 044044 386 SNG-CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIK-P----TVVTYNTLFLGLFEIHQVERALKLFDEMRRN-- 457 (508)
Q Consensus 386 ~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 457 (508)
..+ ......++..+...+...|++++|...+++..+.... . ...++..+...+...|++++|.+.++++.+.
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 000 0001223444455555555555555555554432000 0 1334555555666666666666666555432
Q ss_pred --CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 458 --HV-AADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 458 --~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
+. .....++..+...|.+.|++++|...+++..+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 10 01133455666666666777777776666654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.1e-14 Score=129.76 Aligned_cols=243 Identities=12% Similarity=0.045 Sum_probs=149.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC----HhHHHHHHHHHHccCCHHHHHHHHHHHhhC----CCC
Q 044044 214 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN----TVTYNTIIDGLCKEGFVDKAKELFLKMKDE----NIN 285 (508)
Q Consensus 214 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~ 285 (508)
.+......+...|++++|+.+|+++.... +.+ ...+..+...+...|++++|.+.+++..+. +..
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 79 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccccc
Confidence 34455666777788888888888777754 122 346667777777777777777777765432 111
Q ss_pred -CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHhcCC-------------hhHHHHHH
Q 044044 286 -PDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV-QPD----VVTFSVIMDELCKNGK-------------MDKASRLL 346 (508)
Q Consensus 286 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~-------------~~~a~~~~ 346 (508)
.....+..+...+...|++++|...+++..+... ..+ ..++..+...+...|+ .+++...
T Consensus 80 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~- 158 (338)
T 3ro2_A 80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA- 158 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH-
Confidence 1133455555666666666666666665543210 001 1133344444444444 1111111
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 347 ELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESN----G-CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
+++|.+.+++..+. + .+.....+..+...+...|++++|...+++..+
T Consensus 159 ---------------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 211 (338)
T 3ro2_A 159 ---------------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211 (338)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44554444443221 1 011234677778888888888888888888765
Q ss_pred C----CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 422 K----GI-KPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHV-AAD----TYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 422 ~----~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
. +. .....++..+...+...|++++|.+.+++..+... ..+ ..++..+...|...|++++|...++++.+
T Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 212 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3 11 11234788899999999999999999998875311 112 55778889999999999999999999874
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-13 Score=129.55 Aligned_cols=301 Identities=10% Similarity=-0.042 Sum_probs=180.7
Q ss_pred HHhcCChhHHHHHHHHHHhC--CCCCC--HHhHHHHHHH--HHhcCCcchHH-----------HHHHHHHhCCCCCCHH-
Q 044044 117 LAKNKHYDTVLSLFKRLNSA--GLFPD--IYTHSILINC--FCKMGRVSHGF-----------VVLGRILRSCFTPNAV- 178 (508)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~g~~~~a~-----------~~~~~~~~~~~~~~~~- 178 (508)
+.+.+++++|..+++++.+. ....| ...|-.++.. ....++++.+. +.++.+.... .+..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 34678888888888877543 12223 2333333322 11223333333 6666654321 1111
Q ss_pred -----hHHHHHHHHHhcCCHHHHHHHHHHhhhcCC-CC----CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 044044 179 -----TFTSLIKGLCAESRIMEAAALFTKHRVFAC-EP----DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 248 (508)
Q Consensus 179 -----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 248 (508)
.+......+...|++++|+..|++....-. .+ ...++..+...|...|++++|+..+++........+..
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 122355677888999999999999876410 12 24678899999999999999999999987643211000
Q ss_pred ccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC
Q 044044 249 CKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENIN-PD----VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GV 319 (508)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~ 319 (508)
.+....+++.+...|...|++++|.+.|++..+.... .+ ..++..+...|...|++++|+..+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 1112457888889999999999999999887643100 11 236677777888888888888888777662 22
Q ss_pred -CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCCHHhHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCC
Q 044044 320 -QPDVVTFSVIMDELCKNGKMDKASRLLELMIWRG----VNPNTYTYNTLIDGYCLTDK---IDHARKLFVSMESNGCMH 391 (508)
Q Consensus 320 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~ 391 (508)
+....++..+..++.+.|++++|...+++..+.. .+.....+..+...|...|+ +++|..++++... .+.
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~ 337 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YAD 337 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHH
Confidence 2234566777777777788777777777765431 11112224455566666666 5555555554411 011
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 392 DVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 392 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
....+..+...|...|++++|...+++..+
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 223455566666666666666666666554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-12 Score=108.85 Aligned_cols=174 Identities=14% Similarity=0.090 Sum_probs=112.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044044 322 DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLIN 401 (508)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (508)
+...|..+...+...|++++|...|+++++... -+...+..+..+|.+.|++++|...+..+.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 445666666666666777777777766666532 245666666666777777777777776666553 445556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044044 402 WYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLE 481 (508)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 481 (508)
.+...++++.|...+.+..+... .+...+..+..++...|++++|++.|++..+.. +.+...|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 66777777777777777666532 245566667777777777777777777776653 2356667777777777777777
Q ss_pred HHHHHHHHHHcCCccCHHHH
Q 044044 482 ALELFRAIRDSKYELNIVSY 501 (508)
Q Consensus 482 A~~~~~~m~~~g~~p~~~~~ 501 (508)
|++.|++.++ +.|+...|
T Consensus 160 A~~~~~~al~--~~p~~a~~ 177 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKKAKY 177 (184)
T ss_dssp HHHHHHHHHH--TTHHHHHH
T ss_pred HHHHHHHHHh--CCccCHHH
Confidence 7777777765 34554433
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-13 Score=133.69 Aligned_cols=217 Identities=12% Similarity=0.011 Sum_probs=185.3
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHH
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHY-DTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVV 164 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 164 (508)
.+++|+..++......+. +...+..+...+...|++ ++|++.|+++.+.. +.+...|..+..++.+.|++++|.+.
T Consensus 83 ~~~~al~~l~~~~~~~~~--~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQV--EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCch--hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 367788888887776665 888999999999999999 99999999998864 45688999999999999999999999
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhc---------CCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhc--------CC
Q 044044 165 LGRILRSCFTPNAVTFTSLIKGLCAE---------SRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRT--------GH 227 (508)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~ 227 (508)
|+++++.. |+...+..+...+... |++++|+..|++..... +.+...|..+..+|... |+
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 99999874 6678899999999999 99999999999998875 44688999999999998 99
Q ss_pred hHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 044044 228 TIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEA 307 (508)
Q Consensus 228 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 307 (508)
+++|+..|++....++. ...+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|
T Consensus 237 ~~~A~~~~~~al~~~p~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRK----ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHHHHCGG----GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC----cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999986410 01478899999999999999999999999998763 33566788888888889999988
Q ss_pred HHHHHH
Q 044044 308 KRLFIE 313 (508)
Q Consensus 308 ~~~~~~ 313 (508)
++.+.+
T Consensus 312 i~~~~~ 317 (474)
T 4abn_A 312 LESKGK 317 (474)
T ss_dssp HHHTTT
T ss_pred HHHhcc
Confidence 876544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.2e-12 Score=114.87 Aligned_cols=218 Identities=11% Similarity=0.035 Sum_probs=176.9
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 044044 270 DKAKELFLKMKDENINPDVVTYTSVIRGFCY-------ANDW-------NEAKRLFIEMMDQGVQPDVVTFSVIMDELCK 335 (508)
Q Consensus 270 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 335 (508)
++|...|+++.... +.++..|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 68889999988752 4467788888777653 5775 8999999999984224456689999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCC-HH-hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 044044 336 NGKMDKASRLLELMIWRGVNPN-TY-TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYC-KNKDVEEA 412 (508)
Q Consensus 336 ~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 412 (508)
.|++++|..+|+++++. .|+ .. +|..++..+.+.|++++|..+|+++.+.. +.+...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999975 443 43 89999999999999999999999999875 445555654444322 37999999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 413 LSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH-VAA--DTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 413 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
..+|+++++..+ -+...|..++..+...|++++|..+|++..+.. ++| ....|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999988643 367888999999999999999999999999863 344 4678999999999999999999999999
Q ss_pred HHc
Q 044044 490 RDS 492 (508)
Q Consensus 490 ~~~ 492 (508)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.4e-13 Score=128.85 Aligned_cols=215 Identities=13% Similarity=-0.018 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 044044 269 VDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDW-NEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLE 347 (508)
Q Consensus 269 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 347 (508)
++++...+++.... .+.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55666666665554 234677777888888888888 88888888887763 3456788888888888888888888888
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHcC---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 044044 348 LMIWRGVNPNTYTYNTLIDGYCLT---------DKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKN--------KDVE 410 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 410 (508)
++++. .|+...+..+...|... |++++|...++++.+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 88866 45667788888888888 88888888888888765 55678888888888887 8888
Q ss_pred HHHHHHHHHHHCCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 411 EALSLYSEMLSKGIK--PTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRA 488 (508)
Q Consensus 411 ~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 488 (508)
+|+..|+++++.... -+...|..+..+|...|++++|++.|++..+.. +.+...+..+..++...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888888875321 367788888888888888888888888888763 33566778888888888888888875544
Q ss_pred H
Q 044044 489 I 489 (508)
Q Consensus 489 m 489 (508)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-11 Score=118.15 Aligned_cols=403 Identities=10% Similarity=0.015 Sum_probs=282.3
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCC---hhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCc--
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKH---YDTVLSLFKRLNSAG-LFPDIYTHSILINCFCKMGRV-- 158 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~-- 158 (508)
++++.+..+|+.++...|. ....|...+..-.+.|+ ++.+..+|++.+... ..|+...|...+.-..+.++.
T Consensus 80 ~~~~~aR~vyEraL~~fP~--~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~ 157 (679)
T 4e6h_A 80 KQWKQVYETFDKLHDRFPL--MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIIT 157 (679)
T ss_dssp TCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTT
T ss_pred CcHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccccc
Confidence 5899999999999999987 88899999999889999 999999999998863 138999999888877666654
Q ss_pred ------chHHHHHHHHHh-CCC-CC-CHHhHHHHHHHHHh---------cCCHHHHHHHHHHhhhcCCCCCHhhHHHHHH
Q 044044 159 ------SHGFVVLGRILR-SCF-TP-NAVTFTSLIKGLCA---------ESRIMEAAALFTKHRVFACEPDVFTYNTLIN 220 (508)
Q Consensus 159 ------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 220 (508)
+...++|+.++. .|. .+ +...|...+..... .++++.+..+|++++......-..+|.....
T Consensus 158 ~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~ 237 (679)
T 4e6h_A 158 GGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ 237 (679)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 234477887665 455 44 45688888766542 3457788999999885311111233322211
Q ss_pred HHHh-------------cCChHHHHHHHHHHHhCCCCCCc------------cccC-------CHhHHHHHHHHHHccC-
Q 044044 221 GLCR-------------TGHTIVALNLFEEMANGNGEFGV------------VCKP-------NTVTYNTIIDGLCKEG- 267 (508)
Q Consensus 221 ~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~------------~~~~-------~~~~~~~l~~~~~~~g- 267 (508)
.-.. ..+++.|...+.++......... .+++ ....|...+..--..+
T Consensus 238 fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~ 317 (679)
T 4e6h_A 238 WEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL 317 (679)
T ss_dssp HHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT
T ss_pred HHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc
Confidence 1111 12334455555543321110000 0010 1245666665544432
Q ss_pred ------CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHhHHHHHHHHHhcCChh
Q 044044 268 ------FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAK-RLFIEMMDQGVQPDVVTFSVIMDELCKNGKMD 340 (508)
Q Consensus 268 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 340 (508)
..+.+..+|+++... .+.....|...+..+...|+.++|. ++|+..... ++.+...|...+....+.|+++
T Consensus 318 ~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e 395 (679)
T 4e6h_A 318 ELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIP 395 (679)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred cccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHH
Confidence 345567789888776 4457788888888888899999997 999999875 4556667778888889999999
Q ss_pred HHHHHHHHHHHcC---------CCC------------CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044044 341 KASRLLELMIWRG---------VNP------------NTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTL 399 (508)
Q Consensus 341 ~a~~~~~~~~~~~---------~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 399 (508)
.|..+|+.+++.. ..| ...+|...+....+.|+.+.|..+|.++.+.........|...
T Consensus 396 ~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~ 475 (679)
T 4e6h_A 396 EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLEN 475 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 9999999988641 013 2346888888888899999999999999876112233445444
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc
Q 044044 400 INWYCKN-KDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAA--DTYTYNNFIDGLCKS 476 (508)
Q Consensus 400 ~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~ 476 (508)
+..-.+. ++.+.|.++|+..++. .+-+...+...+......|+.+.|..+|++.......+ ....|...+..-.+.
T Consensus 476 A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~ 554 (679)
T 4e6h_A 476 AYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV 554 (679)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence 4443444 4599999999999987 33356667788888888999999999999998864322 346888899888999
Q ss_pred CCHHHHHHHHHHHHHc
Q 044044 477 GFVLEALELFRAIRDS 492 (508)
Q Consensus 477 g~~~~A~~~~~~m~~~ 492 (508)
|+.+.+.++.+++.+.
T Consensus 555 G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 555 GSLNSVRTLEKRFFEK 570 (679)
T ss_dssp CCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999875
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-12 Score=106.72 Aligned_cols=166 Identities=16% Similarity=0.066 Sum_probs=81.2
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 044044 252 NTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMD 331 (508)
Q Consensus 252 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 331 (508)
+..+|..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34455555555555555555555555555432 1234445555555555555555555555554432 223334444444
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044044 332 ELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEE 411 (508)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 411 (508)
.+...++++.+...+....+.. +.+...+..+...|.+.|++++|++.|+++.+.. +.+...|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 4555555555555555544432 1234444444455555555555555555544433 3344444455555555555555
Q ss_pred HHHHHHHHHH
Q 044044 412 ALSLYSEMLS 421 (508)
Q Consensus 412 A~~~~~~~~~ 421 (508)
|++.|+++++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555444
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-14 Score=127.84 Aligned_cols=242 Identities=14% Similarity=0.052 Sum_probs=172.7
Q ss_pred ccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 044044 249 CKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE-------NINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ---- 317 (508)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 317 (508)
.+.+..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+++..+.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999999999998763 22334567888899999999999999999998764
Q ss_pred --CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044044 318 --GV-QPDVVTFSVIMDELCKNGKMDKASRLLELMIWR------GVNP-NTYTYNTLIDGYCLTDKIDHARKLFVSMESN 387 (508)
Q Consensus 318 --~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (508)
+. +.....+..+...+...|++++|...++++.+. +..| ....+..+...+...|++++|.++++++.+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22 223457888889999999999999999998764 2222 3557888889999999999999999988764
Q ss_pred ------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHh-------HHHHHHHHHHhcCCHHH
Q 044044 388 ------G-CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK-------GIKPTVV-------TYNTLFLGLFEIHQVER 446 (508)
Q Consensus 388 ------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~-------~~~~l~~~~~~~g~~~~ 446 (508)
+ .+....++..+..+|...|++++|...++++.+. ...+... .+..+...+...+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 1 1223557888999999999999999999998863 1111111 12222233334445555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 447 ALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 447 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
+...++..... .+.+..++..+..+|.+.|++++|.+.|++..+
T Consensus 263 a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 263 YGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55666665543 233566788999999999999999999999875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-13 Score=125.49 Aligned_cols=176 Identities=14% Similarity=0.049 Sum_probs=125.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc-------CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-Cc
Q 044044 176 NAVTFTSLIKGLCAESRIMEAAALFTKHRVF-------ACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF-GV 247 (508)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~ 247 (508)
+..++..+...+...|++++|+.+++++... ..+....++..+...+...|++++|+..++++....... +.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456677777778888888888888777653 223345677888888889999999999888877641000 00
Q ss_pred cccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 044044 248 VCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE------NI-NPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ--- 317 (508)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 317 (508)
..+.....+..+...+...|++++|.+.++++.+. +. +.....+..+...+...|++++|+++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 01334668888999999999999999999988753 11 123456777888888889999999888888764
Q ss_pred ---CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044044 318 ---GVQP-DVVTFSVIMDELCKNGKMDKASRLLELMIW 351 (508)
Q Consensus 318 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 351 (508)
+..| ...++..+..++...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2122 234667777788888888888888887765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.4e-12 Score=117.14 Aligned_cols=232 Identities=13% Similarity=-0.026 Sum_probs=176.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCC-CC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C---CC-CHH
Q 044044 256 YNTIIDGLCKEGFVDKAKELFLKMKDENI-NP----DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG--V---QP-DVV 324 (508)
Q Consensus 256 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~---~~-~~~ 324 (508)
+......+...|++++|...|+++.+... .+ ....+..+...|...|+++.|...+++..+.. . .+ ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 34456667889999999999999876411 12 24567888899999999999999999887531 1 11 244
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHh-----CCCCCCHH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWR----GVN-PNTYTYNTLIDGYCLTDKIDHARKLFVSMES-----NGCMHDVV 394 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 394 (508)
+++.+..+|...|++++|...++++++. +.. ....++..+..+|...|++++|.+.+++..+ .. +....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHH
Confidence 7788889999999999999999988763 111 1245678888999999999999999999887 43 33477
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHH
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEMLSKGI----KPTVVTYNTLFLGLFEIHQ---VERALKLFDEMRRNHVAA-DTYTY 466 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~ 466 (508)
++..+...+.+.|++++|...+++..+... +.....+..+...+...++ +++|+.++++. +..+ ....+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 339 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHH
Confidence 888999999999999999999999887521 1123355666677778888 77777777762 2222 23466
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 467 NNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 467 ~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
..+...|...|++++|...|++..+
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7888999999999999999999874
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.6e-11 Score=112.63 Aligned_cols=298 Identities=12% Similarity=0.023 Sum_probs=166.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHh-----hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCH--
Q 044044 181 TSLIKGLCAESRIMEAAALFTKHRVFACEPDVF-----TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT-- 253 (508)
Q Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-- 253 (508)
......+...|++++|...+++..... +.+.. +++.+...+...|++++|...+++...... ...+.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~ 91 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR-----QHDVWHY 91 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----HTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-----hcCcHHH
Confidence 334445556777777777777766542 32332 344555666677777777777777766431 11111
Q ss_pred --hHHHHHHHHHHccCCHHHHHHHHHHHhhC----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C-
Q 044044 254 --VTYNTIIDGLCKEGFVDKAKELFLKMKDE----NIN--P-DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ--P- 321 (508)
Q Consensus 254 --~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~- 321 (508)
.++..+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++....... +
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence 12445666677777777777777766542 111 1 1234455666667777777777777776654211 1
Q ss_pred -CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHhHH-----HHHHHHHcCCCHHHHHHHHHHHHhCCCCC---
Q 044044 322 -DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPN-TYTYN-----TLIDGYCLTDKIDHARKLFVSMESNGCMH--- 391 (508)
Q Consensus 322 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--- 391 (508)
....+..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+
T Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence 123455666667777777777777776654311111 11111 22233566777777777777665543111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044044 392 DVVSYNTLINWYCKNKDVEEALSLYSEMLSK----GIKPTV-VTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTY 466 (508)
Q Consensus 392 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 466 (508)
....+..+...+...|++++|...+++.... |..++. .++..+..++...|+.++|...+++..+....
T Consensus 252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~------ 325 (373)
T 1hz4_A 252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR------ 325 (373)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc------
Confidence 1224555666677777777777777766542 211122 24555666677777777777777776653100
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 467 NNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 467 ~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
...+..+...| +....+++.+...
T Consensus 326 ~g~~~~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 326 TGFISHFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HCCCHHHHTTH--HHHHHHHHHHHHT
T ss_pred ccHHHHHHHcc--HHHHHHHHHHHhC
Confidence 11223344444 4556666666543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-11 Score=116.62 Aligned_cols=302 Identities=11% Similarity=-0.022 Sum_probs=184.1
Q ss_pred HhcCChhHHHHHHHHHHhCC--CCCC--HHhHHHHHHH--HHhcCCcchHH---------HHHHHHHhCCCCCCH----H
Q 044044 118 AKNKHYDTVLSLFKRLNSAG--LFPD--IYTHSILINC--FCKMGRVSHGF---------VVLGRILRSCFTPNA----V 178 (508)
Q Consensus 118 ~~~g~~~~A~~~~~~~~~~~--~~~~--~~~~~~l~~~--~~~~g~~~~a~---------~~~~~~~~~~~~~~~----~ 178 (508)
...+++++|..+++++.+.. ...| ...|-.++.. ..-.+.+..+. ..++.+.....+.+. .
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~ 102 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY 102 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHH
Confidence 67899999999998875421 2223 3333444332 12223344444 666665432111111 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhcCC-CCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCH
Q 044044 179 TFTSLIKGLCAESRIMEAAALFTKHRVFAC-EPD----VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT 253 (508)
Q Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 253 (508)
.+......+...|++++|+..|++...... .++ ..++..+...|...|++++|+..+++........+.......
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 233445567788999999999999875421 122 457888999999999999999999988764211000001124
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHH
Q 044044 254 VTYNTIIDGLCKEGFVDKAKELFLKMKDE----NIN-PDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQPDVV 324 (508)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~ 324 (508)
.+++.+..+|...|++++|.+.|++..+. +.. ....++..+...|...|++++|+..+++..+. +.+....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 57788899999999999999999887652 111 11345667777888888888888888877661 1222355
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CC-CHHhHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCHHHHH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGV---NP-NTYTYNTLIDGYCLTDK---IDHARKLFVSMESNGCMHDVVSYN 397 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~ 397 (508)
++..+..++.+.|++++|...+++..+... .+ ....+..+...|...++ +.+|...+++... .+.....+.
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~ 340 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHH
Confidence 666777777778888888887777766421 11 13344555555666666 5555555554211 011223445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 398 TLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
.+...|...|++++|...|++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566666677777777776666554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.8e-11 Score=111.79 Aligned_cols=305 Identities=12% Similarity=0.012 Sum_probs=206.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-Hhh----H
Q 044044 145 HSILINCFCKMGRVSHGFVVLGRILRSCFTPNAV----TFTSLIKGLCAESRIMEAAALFTKHRVFACEPD-VFT----Y 215 (508)
Q Consensus 145 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~----~ 215 (508)
.......+...|++++|...+++.+......+.. +++.+...+...|++++|...+++......... ... +
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556678899999999999988764332322 456677788889999999999999877532222 221 4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccC-CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC--C--Chhh
Q 044044 216 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP-NTVTYNTIIDGLCKEGFVDKAKELFLKMKDENIN--P--DVVT 290 (508)
Q Consensus 216 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~--~~~~ 290 (508)
..+...+...|++++|...+++........+....| ....+..+...+...|++++|...+++....... + ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 567788889999999999999999865322110002 2345667888889999999999999988754221 1 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHhHH----HHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHhH
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPD--VVTFS----VIMDELCKNGKMDKASRLLELMIWRGVNPN---TYTY 361 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 361 (508)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...++........+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77778888899999999999998875421111 11111 233447789999999999988875432211 2345
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 044044 362 NTLIDGYCLTDKIDHARKLFVSMESN----GCMHDV-VSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFL 436 (508)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 436 (508)
..+...+...|++++|...+++.... +..++. ..+..+..++...|+.++|...+++...... . .....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccHHH
Confidence 67778889999999999999887543 211122 2566677888899999999999999887521 1 11222
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 044044 437 GLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~~ 457 (508)
.+...| +....+++.+...
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHcc--HHHHHHHHHHHhC
Confidence 333444 5566666666654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.5e-12 Score=126.15 Aligned_cols=166 Identities=12% Similarity=0.054 Sum_probs=139.8
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 185 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (508)
+..+|+.+..++.+.|++++|++.|++.++.. +-+...|..+..++.+.|++++|++.|+++++.. +.+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 67788899999999999999999999988763 4467788889999999999999999999988764 346778888999
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHc
Q 044044 186 GLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCK 265 (508)
Q Consensus 186 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (508)
+|...|++++|++.|++..+.. +.+..+|+.+..+|.+.|++++|++.|++..+.+ +.+...+..++.++..
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-------P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-------PDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHhhhhhHHHh
Confidence 9999999999999999988774 4467888999999999999999999999988864 4457788889999999
Q ss_pred cCCHHHHHHHHHHHhh
Q 044044 266 EGFVDKAKELFLKMKD 281 (508)
Q Consensus 266 ~g~~~~a~~~~~~~~~ 281 (508)
.|++++|.+.++++.+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999888887654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-11 Score=123.21 Aligned_cols=163 Identities=12% Similarity=0.016 Sum_probs=82.5
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044044 324 VTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWY 403 (508)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (508)
..++.+..++.+.|++++|.+.|+++++... -+...+..+..+|.+.|++++|++.|++.++.+ +.+...|..+..+|
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3445555555555555555555555554421 134455555555555555555555555555443 33445555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044044 404 CKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEAL 483 (508)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 483 (508)
...|++++|++.|+++++.... +...|..+..+|...|++++|++.|++..+.. +-+...|..+..+|...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHH
Confidence 5555555555555555554221 34455555555555555555555555555432 123445555555555555555555
Q ss_pred HHHHHHH
Q 044044 484 ELFRAIR 490 (508)
Q Consensus 484 ~~~~~m~ 490 (508)
+.+++++
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4.5e-11 Score=99.48 Aligned_cols=163 Identities=15% Similarity=0.069 Sum_probs=109.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYC 404 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (508)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44455556666666666666666665442 2245566666667777777777777777766553 445666777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044044 405 KNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALE 484 (508)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 484 (508)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777776653 2356666777777777777777777777777653 3356677777777777788888887
Q ss_pred HHHHHHH
Q 044044 485 LFRAIRD 491 (508)
Q Consensus 485 ~~~~m~~ 491 (508)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.38 E-value=3.6e-11 Score=100.05 Aligned_cols=165 Identities=18% Similarity=0.054 Sum_probs=125.5
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 044044 108 SSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGL 187 (508)
Q Consensus 108 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (508)
..+..++..+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456667777788888888888888877653 4466777778888888888888888888877653 34567777788888
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC
Q 044044 188 CAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG 267 (508)
Q Consensus 188 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 267 (508)
...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-------PNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHcC
Confidence 88888888888888877664 4466777788888888888888888888877754 345677777888888888
Q ss_pred CHHHHHHHHHHHhhC
Q 044044 268 FVDKAKELFLKMKDE 282 (508)
Q Consensus 268 ~~~~a~~~~~~~~~~ 282 (508)
++++|.+.++++.+.
T Consensus 159 ~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 159 RHEEALPHFKKANEL 173 (186)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 888888888777653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-10 Score=100.77 Aligned_cols=200 Identities=11% Similarity=0.001 Sum_probs=157.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHH
Q 044044 286 PDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLI 365 (508)
Q Consensus 286 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 365 (508)
.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...++..++.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567888888999999999999999999998754367778878999999999999999999999977432 577888999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhHHHHHH
Q 044044 366 DGYCLTDKIDHARKLFVSMESNGCMHDV-------VSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPT---VVTYNTLF 435 (508)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 435 (508)
.+|...|++++|...+++..+.. +.+. ..|..+...+...|++++|+..|+++++. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998874 4455 55888888999999999999999999986 444 46777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHH
Q 044044 436 LGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIV 499 (508)
Q Consensus 436 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 499 (508)
.++... +...++++...+ ..+...|.... ....|.+++|+..|++..+. .|+..
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~ 214 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT 214 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence 777654 444556666553 23455554443 34567789999999999875 45543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.34 E-value=5.5e-12 Score=112.99 Aligned_cols=235 Identities=15% Similarity=0.052 Sum_probs=162.5
Q ss_pred CCCCChHHHHHHHHHhHHcC-----CC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC------CC-CCCHHhHHHH
Q 044044 82 INLITPNEALCIFDYMLRMH-----PS-PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSA------GL-FPDIYTHSIL 148 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 148 (508)
...|+++.|+..|+++++.. +. +....++..+...+...|++++|+..++++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34567777877777776631 11 135678999999999999999999999998754 21 2245678889
Q ss_pred HHHHHhcCCcchHHHHHHHHHhC------C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc------C-CCCCHhh
Q 044044 149 INCFCKMGRVSHGFVVLGRILRS------C-FTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF------A-CEPDVFT 214 (508)
Q Consensus 149 ~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~ 214 (508)
...+...|++++|...++++... . .+....++..+...+...|++++|+..+++.... + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1234567888999999999999999999998765 1 1223567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCccccCCHhHHHHHHHHHHccC------CHHHHHHHHHHHhhCCCCC
Q 044044 215 YNTLINGLCRTGHTIVALNLFEEMANGNGE--FGVVCKPNTVTYNTIIDGLCKEG------FVDKAKELFLKMKDENINP 286 (508)
Q Consensus 215 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g------~~~~a~~~~~~~~~~~~~~ 286 (508)
+..+...+...|++++|+.+++++...... .+.........|..+...+...+ .+..+...++...... +.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS-PT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC-HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC-HH
Confidence 889999999999999999999998864100 00001122334444444443322 3455555555555452 22
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 287 DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 287 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
...++..+...|...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567888999999999999999999988753
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-10 Score=99.24 Aligned_cols=208 Identities=10% Similarity=-0.049 Sum_probs=160.1
Q ss_pred cCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 044044 250 KPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVI 329 (508)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 329 (508)
+.|+..+......+...|++++|.+.|++..+....++...+..+..++...|++++|+..+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346688899999999999999999999999887543677788889999999999999999999999864 3356688899
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 044044 330 MDELCKNGKMDKASRLLELMIWRGVNPNT-------YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMH--DVVSYNTLI 400 (508)
Q Consensus 330 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 400 (508)
..++...|++++|...+++.++.... +. ..|..+...+...|++++|.+.|+++.+.+ +. +...|..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 99999999999999999999987432 44 457888889999999999999999999874 33 456778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044044 401 NWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNF 469 (508)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 469 (508)
.+|...| ..+++++...+. .+...|.... ....+.+++|+..+++..+.. +.+..+...+
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 8876544 344555555432 2344444433 345567899999999999863 2244444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-10 Score=105.28 Aligned_cols=212 Identities=13% Similarity=0.054 Sum_probs=150.9
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHHhcCChhHH
Q 044044 268 FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQPD-VVTFSVIMDELCKNGKMDKA 342 (508)
Q Consensus 268 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 342 (508)
++++|...|++. ...|...|++++|...|++..+. |.+++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888888776 33567789999999888877653 22222 45788888889999999999
Q ss_pred HHHHHHHHHcCCC-CC----HHhHHHHHHHHHcC-CCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 044044 343 SRLLELMIWRGVN-PN----TYTYNTLIDGYCLT-DKIDHARKLFVSMESNGCM-HD----VVSYNTLINWYCKNKDVEE 411 (508)
Q Consensus 343 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~ 411 (508)
...+++.++.... .+ ..+++.+..+|... |++++|+..|++..+.... .+ ..+++.++..+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9988887754211 01 35778888889886 9999999999888764210 01 3568888999999999999
Q ss_pred HHHHHHHHHHCCCCCCH------hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHH--hcC
Q 044044 412 ALSLYSEMLSKGIKPTV------VTYNTLFLGLFEIHQVERALKLFDEMRRNHVAAD------TYTYNNFIDGLC--KSG 477 (508)
Q Consensus 412 A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~--~~g 477 (508)
|+..|++..+....... ..|..+..++...|++++|+..+++..+. .|+ ...+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999886433222 15677888899999999999999988764 222 123445566664 456
Q ss_pred CHHHHHHHHHHHHHcCCccCH
Q 044044 478 FVLEALELFRAIRDSKYELNI 498 (508)
Q Consensus 478 ~~~~A~~~~~~m~~~g~~p~~ 498 (508)
++++|+..|+++.. +.|+.
T Consensus 255 ~~~~A~~~~~~~~~--l~~~~ 273 (292)
T 1qqe_A 255 QLSEHCKEFDNFMR--LDKWK 273 (292)
T ss_dssp THHHHHHHHTTSSC--CCHHH
T ss_pred HHHHHHHHhccCCc--cHHHH
Confidence 78888888877753 44544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-11 Score=108.81 Aligned_cols=227 Identities=13% Similarity=0.027 Sum_probs=157.9
Q ss_pred HccCCHHHHHHHHHHHhhC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHhHHHH
Q 044044 264 CKEGFVDKAKELFLKMKDE-------NINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ------GVQP-DVVTFSVI 329 (508)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~l 329 (508)
...|++++|...|++..+. ..+....++..+...+...|++++|+..++++.+. +..| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567777777777776542 22224667888999999999999999999998864 2222 34578888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc------CC-CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC------C-CCCCHHH
Q 044044 330 MDELCKNGKMDKASRLLELMIWR------GV-NPNTYTYNTLIDGYCLTDKIDHARKLFVSMESN------G-CMHDVVS 395 (508)
Q Consensus 330 ~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~ 395 (508)
...+...|++++|...+.++.+. .. +....++..+...|...|++++|...++++.+. . .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998765 11 223667888899999999999999999998764 1 1224567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC-HhHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCC
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLSK-------GIKPT-VVTYNTLFLGLFEIHQ------VERALKLFDEMRRNHVAA 461 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~~ 461 (508)
+..+..+|...|++++|...++++.+. ...+. ...+..+.......+. +..+...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999998863 11222 2233333333333332 2222222222111 1122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 462 DTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 462 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
....+..+...|...|++++|..+|++.++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345788899999999999999999999875
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.32 E-value=5.2e-09 Score=100.90 Aligned_cols=362 Identities=12% Similarity=0.015 Sum_probs=225.2
Q ss_pred hHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-cchHHHHH
Q 044044 87 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGR-VSHGFVVL 165 (508)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~ 165 (508)
++.|+.+|+.++...|. |+++.+..+|++.... .|+...|...+....+.+. .+....+|
T Consensus 11 i~~aR~vyer~l~~~P~-----------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-----------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred hHHHHHHHHHHHHHCCC-----------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 66778888877776543 6788888888888774 5688888887777666653 35566777
Q ss_pred HHHHhC-CC-CCCHHhHHHHHHHHH----hcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHH-------------hcC
Q 044044 166 GRILRS-CF-TPNAVTFTSLIKGLC----AESRIMEAAALFTKHRVFACEPDVFTYNTLINGLC-------------RTG 226 (508)
Q Consensus 166 ~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~g 226 (508)
+.++.. |. ..+...|...+..+. ..++.+.+.++|++........-...|......-. ..+
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~ 151 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLP 151 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhH
Confidence 776653 42 335667777776544 23567778888888776311111112222211110 112
Q ss_pred ChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC--C-----HHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 044044 227 HTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG--F-----VDKAKELFLKMKDENINPDVVTYTSVIRGFC 299 (508)
Q Consensus 227 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 299 (508)
.+..|..+++.+...- ...+...|...+..-...+ - .+.+..+|+++... .+.+...|...+..+.
T Consensus 152 ~y~~ar~~y~~~~~~~------~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 152 IFQSSFQRYQQIQPLI------RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLI 224 (493)
T ss_dssp HHHHHHHHHHHHHHHH------HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence 3334455555544321 0113446666655533221 1 34567889998875 3446778888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC---------CCC---CHHhHHHHHHH
Q 044044 300 YANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRG---------VNP---NTYTYNTLIDG 367 (508)
Q Consensus 300 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~---~~~~~~~l~~~ 367 (508)
+.|+.+.|..+|++.... +.+...+. .|....+.++. ++.+.+.- ..+ ...+|...+..
T Consensus 225 ~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~ 295 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNY 295 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHH
Confidence 999999999999999987 33333222 23222222222 22222210 001 12456666777
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 044044 368 YCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK-NKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVER 446 (508)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 446 (508)
+.+.++.+.|..+|+++ +.. ..+...|...+..-.. .++.+.|..+|+..++.... +...+...+......|+.+.
T Consensus 296 ~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~ 372 (493)
T 2uy1_A 296 VLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEEN 372 (493)
T ss_dssp HHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 77788899999999999 321 2344555433333222 33699999999999886322 34556667777788999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 447 ALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 447 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
|..+|+.+. .....|...+..-...|+.+.+.++++++..
T Consensus 373 aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 373 ARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999873 2578899888888888999999999988874
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.6e-10 Score=100.45 Aligned_cols=205 Identities=9% Similarity=-0.020 Sum_probs=138.1
Q ss_pred HHHHHHHHhHHcCCCCCCcccHHHHHHHHHhc--C-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHH
Q 044044 89 EALCIFDYMLRMHPSPPPVSSFNILFGCLAKN--K-HYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVL 165 (508)
Q Consensus 89 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 165 (508)
+|.+++.++.+.-+. +...| .+ .+. + ++++|...|++. ...+...|++++|...|
T Consensus 3 ~a~~~~~~a~k~~~~--~~~~~-~~----~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 3 DPVELLKRAEKKGVP--SSGFM-KL----FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CHHHHHHHHHHHSSC--CCTHH-HH----HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHH
T ss_pred cHHHHHHHHHHHhCc--CCCcc-hh----cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 456666666655432 22222 22 222 2 477777777776 33566778888888888
Q ss_pred HHHHhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-CC----HhhHHHHHHHHHhc-CChHHHHHH
Q 044044 166 GRILRS----CFTP-NAVTFTSLIKGLCAESRIMEAAALFTKHRVFACE-PD----VFTYNTLINGLCRT-GHTIVALNL 234 (508)
Q Consensus 166 ~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-g~~~~A~~~ 234 (508)
++.... |.++ ...+|+.+..+|.+.|++++|+..|++....... .+ ..+++.+...|... |++++|+..
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 777653 2111 1457888888888899999999888887654211 11 35788899999996 999999999
Q ss_pred HHHHHhCCCCCCccccC-CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChh------hHHHHHHHHHhcCCHHHH
Q 044044 235 FEEMANGNGEFGVVCKP-NTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVV------TYTSVIRGFCYANDWNEA 307 (508)
Q Consensus 235 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a 307 (508)
|++.....+..+ ... ...++..+...+.+.|++++|...|++..+........ .|..+..++...|++++|
T Consensus 141 ~~~Al~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 218 (292)
T 1qqe_A 141 YELAGEWYAQDQ--SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA 218 (292)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999887431000 000 13567888899999999999999999988764332221 456677778888888888
Q ss_pred HHHHHHHHHc
Q 044044 308 KRLFIEMMDQ 317 (508)
Q Consensus 308 ~~~~~~~~~~ 317 (508)
+..|++..+.
T Consensus 219 ~~~~~~al~l 228 (292)
T 1qqe_A 219 ARTLQEGQSE 228 (292)
T ss_dssp HHHHHGGGCC
T ss_pred HHHHHHHHhh
Confidence 8888887653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.23 E-value=7.5e-09 Score=91.29 Aligned_cols=246 Identities=10% Similarity=0.010 Sum_probs=139.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH
Q 044044 114 FGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRI 193 (508)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 193 (508)
++-..-.|++..++.-...+.. ..+......+.+++...|+++.. ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 3444567888888774433321 22233444455777777777642 11233333444333333 211
Q ss_pred HHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHH
Q 044044 194 MEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAK 273 (508)
Q Consensus 194 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 273 (508)
|+..|++....+ .++..++..+..++...|++++|++++.+....+. ..-+...+..++.++.+.|+.+.|.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-----~~~~lea~~l~vqi~L~~~r~d~A~ 156 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE-----AEGTTELLLLAIEVALLNNNVSTAS 156 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-----STTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-----CcCcHHHHHHHHHHHHHCCCHHHHH
Confidence 667777666544 34455556677777777777777777777765541 0135566677777777777777777
Q ss_pred HHHHHHhhCCCCC-----ChhhHHHHHHHHHh--cC--CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 044044 274 ELFLKMKDENINP-----DVVTYTSVIRGFCY--AN--DWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASR 344 (508)
Q Consensus 274 ~~~~~~~~~~~~~-----~~~~~~~l~~~~~~--~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 344 (508)
+.+++|.+. .| +..+...++.++.. .| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+
T Consensus 157 k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 157 TIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHH
Confidence 777777664 33 23444455544222 23 677777777776554 3443333344446777777777777
Q ss_pred HHHHHHHcC---------CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044044 345 LLELMIWRG---------VNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNG 388 (508)
Q Consensus 345 ~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (508)
.++.+.+.. -+.+..++..+|......|+ +|.+++.++.+..
T Consensus 233 ~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 233 IVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 776554421 02245555444444444555 6667777776653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.7e-11 Score=118.26 Aligned_cols=174 Identities=10% Similarity=-0.077 Sum_probs=148.6
Q ss_pred CCCCChHHHHHHHHHhH--------HcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 82 INLITPNEALCIFDYML--------RMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFC 153 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (508)
...|++++|++.|++++ +.+|. +...+..+...+.+.|++++|+..|+++.+.. +.+...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE--SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT--CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc--chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 46789999999999999 76666 88899999999999999999999999998864 557888999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 044044 154 KMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALN 233 (508)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 233 (508)
..|++++|++.|+++++.. +.+...+..+..++.+.|++++ ++.|++....+ +.+...|..+..++.+.|++++|++
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998874 3467888999999999999999 99999998875 4467899999999999999999999
Q ss_pred HHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCC
Q 044044 234 LFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGF 268 (508)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 268 (508)
.|+++.+.+ +.+...+..+..++...++
T Consensus 556 ~~~~al~l~-------P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTS-------RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTS-------TTHHHHHHHHHHHTC----
T ss_pred HHHhhcccC-------cccHHHHHHHHHHHHccCC
Confidence 999998864 3346778888888766554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.7e-09 Score=90.82 Aligned_cols=177 Identities=14% Similarity=0.052 Sum_probs=89.8
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCC----CHHHHHHHHH
Q 044044 307 AKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTD----KIDHARKLFV 382 (508)
Q Consensus 307 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 382 (508)
|++.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..|...|.. + +.++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444433 34444445555555555555555555555443 34444445555544 4 5555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHh----cCCHHHHHHHHHH
Q 044044 383 SMESNGCMHDVVSYNTLINWYCK----NKDVEEALSLYSEMLSKGIK-PTVVTYNTLFLGLFE----IHQVERALKLFDE 453 (508)
Q Consensus 383 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 453 (508)
+..+.+ +...+..+...|.. .+++++|+.+|++..+.|.. .+...+..|...|.. .+++++|+++|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 555443 44455555555554 55566666666555554321 014445555555555 5556666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCCc
Q 044044 454 MRRNHVAADTYTYNNFIDGLCKS-G-----FVLEALELFRAIRDSKYE 495 (508)
Q Consensus 454 ~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g~~ 495 (508)
..+. ..+...+..|...|... | ++++|..+|++..+.|..
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 5554 12333444455544432 2 566666666666655543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-08 Score=90.10 Aligned_cols=179 Identities=9% Similarity=0.044 Sum_probs=92.4
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 044044 272 AKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV-QPDVVTFSVIMDELCKNGKMDKASRLLELMI 350 (508)
Q Consensus 272 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 350 (508)
|...|++....+ .++...+..+..++...|++++|++++.+.+..+- .-+...+...+..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 23344444555666666666666666666554432 1234455555666666666666666666665
Q ss_pred HcCCCC-----CHHhHHHHHHHH--Hc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 351 WRGVNP-----NTYTYNTLIDGY--CL--TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 351 ~~~~~~-----~~~~~~~l~~~~--~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
+. .| +..+...++.++ .. .++..+|..+|+++.+. .|+..+-..+..++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44 33 133333333332 21 22566666666666544 34322223333356666666666666665443
Q ss_pred CC-----C----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 422 KG-----I----KPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 422 ~~-----~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
.. . +-+..++..++......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 0 1244444445444455555 566666666664
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-09 Score=84.01 Aligned_cols=130 Identities=16% Similarity=0.217 Sum_probs=89.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF 439 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (508)
.+..+...+...|++++|..+++++.+.+ +.+...+..++..+...|++++|..+++++.+.+. .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 35556666667777777777777766553 34566666777777777777777777777766532 24556667777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 440 EIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
..|++++|.++++++.+.. +.+...+..+...+.+.|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777777653 235666777777777788888888877777653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-10 Score=98.19 Aligned_cols=168 Identities=13% Similarity=0.038 Sum_probs=131.5
Q ss_pred CCCCCCChHHHHHHHHHhHHcCCCCCCcccHHH----------------HHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 044044 80 GDINLITPNEALCIFDYMLRMHPSPPPVSSFNI----------------LFGCLAKNKHYDTVLSLFKRLNSAGLFPDIY 143 (508)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 143 (508)
.++..|++++|+..|+++++..|. +...|.. +..++.+.|++++|+..|++..+.. +.+..
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 89 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALNID--RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVD 89 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHH--HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHH
Confidence 344678999999999999999887 7778888 9999999999999999999999874 55788
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHhhhcCCCCCHhhHHHHHHH
Q 044044 144 THSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR--IMEAAALFTKHRVFACEPDVFTYNTLING 221 (508)
Q Consensus 144 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 221 (508)
.+..+..++...|++++|+..|+++++.. +.+..++..+...|...|+ ...+...++.... ..|....+.....+
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHH
Confidence 99999999999999999999999999874 4467888888888866554 4455666666542 23333455566777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHH
Q 044044 222 LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIID 261 (508)
Q Consensus 222 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 261 (508)
+...|++++|+..|++..+. .|+......+..
T Consensus 167 ~~~~~~~~~A~~~~~~al~l--------~P~~~~~~~l~~ 198 (208)
T 3urz_A 167 KLFTTRYEKARNSLQKVILR--------FPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHTHHHHHHHHHHHTTT--------SCCHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh--------CCCHHHHHHHHH
Confidence 78899999999999999985 466555444433
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-08 Score=91.34 Aligned_cols=220 Identities=11% Similarity=0.002 Sum_probs=174.1
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH----Hhc---C
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNK--HYDTVLSLFKRLNSAGLFPDIYTHSILINCF----CKM---G 156 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g 156 (508)
..++|+.+++.++..+|. +..+|+.-..++...| ++++++++++.+.... +-+..+|+.-...+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~nP~--~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINELAS--HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHCcH--HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 447899999999999998 8999999999999999 9999999999998864 44566676655555 555 7
Q ss_pred CcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHH--HHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCC------h
Q 044044 157 RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIM--EAAALFTKHRVFACEPDVFTYNTLINGLCRTGH------T 228 (508)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 228 (508)
++++++.+++++++.. +-+..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|..+|+.....+.+.|. +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 8899999999998864 457788888877788888888 9999999998876 4578888887777777776 8
Q ss_pred HHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHH-HHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCCHH
Q 044044 229 IVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDK-AKELFLKMKDEN--INPDVVTYTSVIRGFCYANDWN 305 (508)
Q Consensus 229 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 305 (508)
+++++.++++...+ +-|...|+.+...+.+.|+... +..+.+++.+.+ -..+...+..+...+.+.|+.+
T Consensus 203 ~eEl~~~~~aI~~~-------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 203 DEELNYVKDKIVKC-------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp HHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhC-------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 88999999888875 5678889888888888877444 555666665432 1335677778888888888888
Q ss_pred HHHHHHHHHHHc
Q 044044 306 EAKRLFIEMMDQ 317 (508)
Q Consensus 306 ~a~~~~~~~~~~ 317 (508)
+|.++++.+.+.
T Consensus 276 ~A~~~~~~l~~~ 287 (306)
T 3dra_A 276 ESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 888888888763
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-09 Score=92.07 Aligned_cols=111 Identities=12% Similarity=0.077 Sum_probs=53.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH----------------HHHHHHhcCChhHHHHHHHHHHHcC
Q 044044 290 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSV----------------IMDELCKNGKMDKASRLLELMIWRG 353 (508)
Q Consensus 290 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~ 353 (508)
.+......+...|++++|+..|++..+.. +.+...+.. +..++.+.|++++|...++++++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34444556667788888888888877652 112333433 3444444444444444444444432
Q ss_pred CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044044 354 VNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWY 403 (508)
Q Consensus 354 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (508)
. .+...+..+..++...|++++|...|+++.+.. +.+...|..+..+|
T Consensus 85 p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 85 P-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYY 132 (208)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 1 133444444444444444444444444444432 23344444444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.3e-09 Score=88.54 Aligned_cols=178 Identities=13% Similarity=0.053 Sum_probs=145.6
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC----ChhHHHHH
Q 044044 270 DKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNG----KMDKASRL 345 (508)
Q Consensus 270 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 345 (508)
.+|.++|++..+.| ++..+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 45778888888875 77888888999999999999999999998876 56777778877777 6 89999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 044044 346 LELMIWRGVNPNTYTYNTLIDGYCL----TDKIDHARKLFVSMESNGCM-HDVVSYNTLINWYCK----NKDVEEALSLY 416 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~ 416 (508)
|++..+.| +...+..|...|.. .+++++|.++|++..+.+.. .+...+..|...|.. .+++++|+.+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998775 67788888888887 88999999999999887511 127788889999988 88999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCCC
Q 044044 417 SEMLSKGIKPTVVTYNTLFLGLFEI-H-----QVERALKLFDEMRRNHV 459 (508)
Q Consensus 417 ~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 459 (508)
++..+. ..+...+..|...|... | +.++|.++|++..+.|.
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999886 22455677788877653 3 89999999999988763
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-09 Score=96.00 Aligned_cols=171 Identities=9% Similarity=-0.056 Sum_probs=119.6
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCCcchHHHHHHHHHhCCC--CCCHHhH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD---IYTHSILINCFCKMGRVSHGFVVLGRILRSCF--TPNAVTF 180 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~ 180 (508)
+...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|+..|+++++... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 55566666777777777777877777777653 223 55667777777777777777777777776522 1123456
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHhhhcCCCCCHhhH-----------------HHHHHHHHhcCChHHHHHHH
Q 044044 181 TSLIKGLCA--------ESRIMEAAALFTKHRVFACEPDVFTY-----------------NTLINGLCRTGHTIVALNLF 235 (508)
Q Consensus 181 ~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~ 235 (508)
..+..++.. .|++++|+..|+++.... +.+.... ..+...|.+.|++++|+..|
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 666667766 777888888887777653 1122233 56788899999999999999
Q ss_pred HHHHhCCCCCCccccCCHhHHHHHHHHHHcc----------CCHHHHHHHHHHHhhC
Q 044044 236 EEMANGNGEFGVVCKPNTVTYNTIIDGLCKE----------GFVDKAKELFLKMKDE 282 (508)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 282 (508)
+++....+. .+.....+..+..+|... |++++|...|+++.+.
T Consensus 172 ~~~l~~~p~----~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 172 EAVFDAYPD----TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHCTT----STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC----CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 999886521 111345777788888766 8889999999998875
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-09 Score=95.22 Aligned_cols=188 Identities=11% Similarity=0.030 Sum_probs=122.2
Q ss_pred cCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHH
Q 044044 250 KPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPD---VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV--QPDVV 324 (508)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~ 324 (508)
+.+...+..+...+.+.|++++|...|+++.+... .+ ...+..+..++.+.|++++|+..|+++.+... +....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 44566777778888888888888888888877532 12 45677777888888888888888888877521 11234
Q ss_pred hHHHHHHHHHh--------cCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 044044 325 TFSVIMDELCK--------NGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSY 396 (508)
Q Consensus 325 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 396 (508)
.+..+..++.. .|++++|...|+++++.... +......+.. +..+... ....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHH
Confidence 56666777777 78888888888887766321 2222211111 1111000 01124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHhc----------CCHHHHHHHHHHHHHC
Q 044044 397 NTLINWYCKNKDVEEALSLYSEMLSKGIKP--TVVTYNTLFLGLFEI----------HQVERALKLFDEMRRN 457 (508)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 457 (508)
..+...|...|++++|+..|+++++..+.. ....+..+..+|... |++++|+..++++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 566777888888888888888887753221 234666777777755 7888888888888875
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.4e-10 Score=91.36 Aligned_cols=146 Identities=10% Similarity=-0.053 Sum_probs=120.4
Q ss_pred cCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 044044 77 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMG 156 (508)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 156 (508)
.|..+.+.|++++|+..+..+....|. +...+..+...|.+.|++++|++.|++.++.. +-+...|..+..++.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~--~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ--KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH--HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 355667788999999999999887766 67788889999999999999999999998864 557889999999999999
Q ss_pred CcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHH-HHHhhhcCCCCCHhhHHHHHHHHHhcCC
Q 044044 157 RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAAL-FTKHRVFACEPDVFTYNTLINGLCRTGH 227 (508)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 227 (508)
++++|+..|+++++.. +.+..++..+...|.+.|++++|.+. +++..+.. +.+..+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 9999999999998874 34678899999999999999877665 58877764 4467788887777777765
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.15 E-value=4.4e-08 Score=94.41 Aligned_cols=345 Identities=9% Similarity=-0.034 Sum_probs=222.3
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCC-hhHHHHHHHHHHhC-CC-CCCHHhHHHHHHHHH----hcCC
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKH-YDTVLSLFKRLNSA-GL-FPDIYTHSILINCFC----KMGR 157 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~ 157 (508)
++++.+..+|+.++... |+...|...+....+.++ .+....+|+.+... |. ..+...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 68999999999999865 488899999988877763 45678888887753 42 347788888887654 3467
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHh-------------cCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHh
Q 044044 158 VSHGFVVLGRILRSCFTPNAVTFTSLIKGLCA-------------ESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCR 224 (508)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 224 (508)
.+.+..+|++++......-...|......-.. .+.+..|..+++.+...-...+...|...+..-..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 88899999999875222112233322221111 12233344444443321001133456555554332
Q ss_pred cC--C-----hHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 044044 225 TG--H-----TIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRG 297 (508)
Q Consensus 225 ~g--~-----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 297 (508)
.+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+|++.... +.+...|..
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~---- 251 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY---- 251 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----
Confidence 21 1 345678999988753 556788999999999999999999999999987 333333322
Q ss_pred HHhcCCHHHHHHHHHHHHHcC---------CCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHH
Q 044044 298 FCYANDWNEAKRLFIEMMDQG---------VQP---DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLI 365 (508)
Q Consensus 298 ~~~~g~~~~a~~~~~~~~~~~---------~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 365 (508)
|....+.++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|+.+ +. ...+...|...+
T Consensus 252 y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A 326 (493)
T 2uy1_A 252 YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCA 326 (493)
T ss_dssp HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHH
T ss_pred HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHH
Confidence 2222111121 22222210 001 1245666677777788899999999999 32 223444554333
Q ss_pred HHHHcCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH
Q 044044 366 DGYCLTD-KIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQV 444 (508)
Q Consensus 366 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 444 (508)
..-...+ +.+.|..+|+...+.. +.+...|...+......|+.+.|..+|+++. .....|...+.--...|+.
T Consensus 327 ~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~ 400 (493)
T 2uy1_A 327 FIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSM 400 (493)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCH
Confidence 3333333 6999999999988763 4456667777888888999999999999973 2567788888777888999
Q ss_pred HHHHHHHHHHHH
Q 044044 445 ERALKLFDEMRR 456 (508)
Q Consensus 445 ~~a~~~~~~~~~ 456 (508)
+.+.++++++.+
T Consensus 401 ~~~r~v~~~~~~ 412 (493)
T 2uy1_A 401 ELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988774
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.8e-10 Score=112.10 Aligned_cols=173 Identities=8% Similarity=-0.077 Sum_probs=128.5
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 044044 118 AKNKHYDTVLSLFKRLN--------SAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCA 189 (508)
Q Consensus 118 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (508)
...|++++|++.++++. +.. +.+...+..+..++.+.|++++|++.++++++.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67788888988888887 432 4456677778888888888888888888887753 3466778888888888
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCH
Q 044044 190 ESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFV 269 (508)
Q Consensus 190 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 269 (508)
.|++++|+..|++..... +.+...|..+..++.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-------DGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-------CchHHHHHHHHHHHHHcCCH
Confidence 888888888888887764 3356778888888888888888 88888888764 44567788888888888888
Q ss_pred HHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCC
Q 044044 270 DKAKELFLKMKDENINPD-VVTYTSVIRGFCYAND 303 (508)
Q Consensus 270 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 303 (508)
++|.+.|+++.+. .|+ ...+..+..++...++
T Consensus 551 ~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 551 VGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 8888888887765 333 4566666666655444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.11 E-value=9.9e-08 Score=85.08 Aligned_cols=219 Identities=9% Similarity=-0.034 Sum_probs=135.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC--CHHHHHHHHHHHhhCCCCCChhhHHHHHHHH----Hh
Q 044044 227 HTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG--FVDKAKELFLKMKDENINPDVVTYTSVIRGF----CY 300 (508)
Q Consensus 227 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 300 (508)
..++|+++++.+...+ +.+...|+.-..++...| ++++++++++.+.....+ +..+|+.-...+ ..
T Consensus 48 ~s~~aL~~t~~~L~~n-------P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 48 YSERALHITELGINEL-------ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp CSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHh
Confidence 3457888888888764 345667777777777777 888888888888775322 445555433333 33
Q ss_pred c---CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCC--
Q 044044 301 A---NDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMD--KASRLLELMIWRGVNPNTYTYNTLIDGYCLTDK-- 373 (508)
Q Consensus 301 ~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 373 (508)
. +++++++.+++.+.+.. +-+...|+.-..++.+.|.++ ++++.++.+++.+.. |...|+.-...+...++
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGC
T ss_pred ccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 3 66777777777777653 446666666666666777766 777777777766543 56666665555555555
Q ss_pred ----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHhHHHHHHHHHHhcCCHHH
Q 044044 374 ----IDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEE-ALSLYSEMLSKG--IKPTVVTYNTLFLGLFEIHQVER 446 (508)
Q Consensus 374 ----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 446 (508)
++++.+.+++++..+ +-|...|+.+...+.+.|+..+ +..+..++.+.+ -..+...+..++.++.+.|+.++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 666666666666554 5566666666666666665333 333444444322 12244555566666666666666
Q ss_pred HHHHHHHHHH
Q 044044 447 ALKLFDEMRR 456 (508)
Q Consensus 447 a~~~~~~~~~ 456 (508)
|+++++.+.+
T Consensus 277 A~~~~~~l~~ 286 (306)
T 3dra_A 277 SRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.11 E-value=5.2e-09 Score=81.55 Aligned_cols=126 Identities=13% Similarity=0.187 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHH
Q 044044 181 TSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTII 260 (508)
Q Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (508)
..+...+...|++++|+.+++++...+ +.+...+..+...+...|++++|..+++++.... +.+...+..+.
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~ 76 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PRSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-------CCchHHHHHHH
Confidence 334444444444444444444444332 2233444444444444455555555554444432 22333444444
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 261 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMM 315 (508)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 315 (508)
..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44444444444444444444331 1123344444444444444444444444443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.9e-09 Score=96.53 Aligned_cols=227 Identities=12% Similarity=-0.006 Sum_probs=142.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 044044 224 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYAND 303 (508)
Q Consensus 224 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 303 (508)
..|++++|.+++++..+.. +.. .+...+++++|...|.++ ...|...|+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-------~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~ 51 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-------KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQ 51 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-------CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHc-------ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCC
Confidence 3567788888888776642 111 011146777777776654 335666778
Q ss_pred HHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCC--HHhHHHHHHHHHcCCC
Q 044044 304 WNEAKRLFIEMMDQ----GVQP-DVVTFSVIMDELCKNGKMDKASRLLELMIWRGV---NPN--TYTYNTLIDGYCLTDK 373 (508)
Q Consensus 304 ~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~ 373 (508)
+++|...|.+..+. +... -..+|..+..+|...|++++|...+++.++... .+. ..++..+...|.. |+
T Consensus 52 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~ 130 (307)
T 2ifu_A 52 LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD 130 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC
Confidence 88877777766543 1111 123667777778888888888888877664311 111 3466777778877 88
Q ss_pred HHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCC
Q 044044 374 IDHARKLFVSMESNGCMH-----DVVSYNTLINWYCKNKDVEEALSLYSEMLSK----GIKPT-VVTYNTLFLGLFEIHQ 443 (508)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~ 443 (508)
+++|+..|++..+..... ...+++.+...|...|++++|+..|++.++. +..+. ..++..++.++...|+
T Consensus 131 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 210 (307)
T 2ifu_A 131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD 210 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC
Confidence 888888888776531000 1456777888888888999988888887763 11111 2256666777777888
Q ss_pred HHHHHHHHHHHHHCCCCC-C---HHHHHHHHHHHHhcCCHHHHHH
Q 044044 444 VERALKLFDEMRRNHVAA-D---TYTYNNFIDGLCKSGFVLEALE 484 (508)
Q Consensus 444 ~~~a~~~~~~~~~~~~~~-~---~~~~~~li~~~~~~g~~~~A~~ 484 (508)
+++|...|++.. ..... + ......++.++ ..|+.+.+.+
T Consensus 211 ~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 211 YVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999998888887 42110 1 12344455555 5677666555
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-09 Score=89.90 Aligned_cols=165 Identities=11% Similarity=0.002 Sum_probs=101.7
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 044044 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKG 186 (508)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (508)
...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|+..++++.... |+...+..+...
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~ 82 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKL 82 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHH
Confidence 3445556666677777777777777765542 3355666667777777777777777777665543 233332222211
Q ss_pred -HHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHc
Q 044044 187 -LCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCK 265 (508)
Q Consensus 187 -~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (508)
+...+...+|+..+++..... +.+...+..+...+...|++++|+..|+++....+ ...+...+..+..++..
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNL-----GAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-----TTTTTHHHHHHHHHHHH
T ss_pred HHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc-----ccChHHHHHHHHHHHHH
Confidence 112223334677777766653 33567777777777778888888888877777542 11234567777777777
Q ss_pred cCCHHHHHHHHHHHh
Q 044044 266 EGFVDKAKELFLKMK 280 (508)
Q Consensus 266 ~g~~~~a~~~~~~~~ 280 (508)
.|+.++|...|++..
T Consensus 157 ~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 157 LGQGNAIASKYRRQL 171 (176)
T ss_dssp HCSSCHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHH
Confidence 777777777777654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-09 Score=107.34 Aligned_cols=154 Identities=12% Similarity=-0.022 Sum_probs=121.9
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHH
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFV 163 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 163 (508)
.|++++|+..|+++++..|. +...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ--DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 36889999999999998887 88899999999999999999999999999874 4568889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhc---CChHHHHHHHHHHHh
Q 044044 164 VLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRT---GHTIVALNLFEEMAN 240 (508)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 240 (508)
.+++.++.. +.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+...+... |++++|.+.+++..+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999998874 4467889999999999999999999999998875 44678899999999999 999999999999998
Q ss_pred CC
Q 044044 241 GN 242 (508)
Q Consensus 241 ~~ 242 (508)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 76
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.08 E-value=3e-09 Score=96.39 Aligned_cols=205 Identities=13% Similarity=0.023 Sum_probs=119.1
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
+.|++++|.++++++.+..+. .. +...++++.|...|+++ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~--~~---------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT--SF---------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC--CS---------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc--cc---------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 345777788888777665432 10 11146677777776654 33556667777777
Q ss_pred HHHHHHHhC----CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCC---CC--CHhhHHHHHHHHHhcCChHHHH
Q 044044 163 VVLGRILRS----CFT-PNAVTFTSLIKGLCAESRIMEAAALFTKHRVFAC---EP--DVFTYNTLINGLCRTGHTIVAL 232 (508)
Q Consensus 163 ~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~ 232 (508)
..+.+.... +.. .-..+|+.+...|...|++++|+..|++...... .+ ...++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 777666542 100 0133566667777777777777777776544310 11 13456667777777 8888888
Q ss_pred HHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC----CCCCC-hhhHHHHHHHHHhcCCHHHH
Q 044044 233 NLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE----NINPD-VVTYTSVIRGFCYANDWNEA 307 (508)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a 307 (508)
..|++........+. ......++..+...+.+.|++++|+..|++..+. +..+. ...+..+...+...|++++|
T Consensus 136 ~~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 136 HLYQQAAAVFENEER-LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCC-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 888776653210000 0001346667777777777777777777776542 11111 12444555556666777777
Q ss_pred HHHHHHHH
Q 044044 308 KRLFIEMM 315 (508)
Q Consensus 308 ~~~~~~~~ 315 (508)
...|++..
T Consensus 215 ~~~~~~al 222 (307)
T 2ifu_A 215 QKCVRESY 222 (307)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 77777666
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.08 E-value=8.9e-10 Score=90.86 Aligned_cols=154 Identities=14% Similarity=0.043 Sum_probs=124.3
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHhcCCcch
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINC-FCKMGRVSH 160 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 160 (508)
...|++++|+..|+++++..|. +...+..+..++...|++++|+..|+++.+.. |+...+..+... +...+....
T Consensus 17 ~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~ 92 (176)
T 2r5s_A 17 LQQGEHAQALNVIQTLSDELQS--RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESP 92 (176)
T ss_dssp HHTTCHHHHHHHHHTSCHHHHT--SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccch
Confidence 3568999999999999999887 88999999999999999999999999987753 355443333222 223344556
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044044 161 GFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEP-DVFTYNTLINGLCRTGHTIVALNLFEEMA 239 (508)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 239 (508)
|...+++.++.. +.+...+..+...+...|++++|+..|+++......+ +...+..+..++...|+.++|...|++..
T Consensus 93 a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 889999988763 3468889999999999999999999999998874332 35688999999999999999999999876
Q ss_pred h
Q 044044 240 N 240 (508)
Q Consensus 240 ~ 240 (508)
.
T Consensus 172 ~ 172 (176)
T 2r5s_A 172 Y 172 (176)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.9e-09 Score=94.53 Aligned_cols=166 Identities=13% Similarity=0.009 Sum_probs=98.6
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHH-HHH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFT-SLI 184 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~ 184 (508)
+...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++.+.|++++|...++++.... |+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 44556666666666777777777777766543 3355566666666777777777777776665542 2332222 222
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHH
Q 044044 185 KGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLC 264 (508)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (508)
..+...++.++|+..|++..... +.+...+..+...+...|++++|+..|+++...++. ..+...+..++..+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~-----~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT-----AADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----GGGGHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-----cccchHHHHHHHHHH
Confidence 23445566666666666666553 335566666666777777777777777766665410 112456666666666
Q ss_pred ccCCHHHHHHHHHHHh
Q 044044 265 KEGFVDKAKELFLKMK 280 (508)
Q Consensus 265 ~~g~~~~a~~~~~~~~ 280 (508)
..|+.++|...|++..
T Consensus 267 ~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 267 ALGTGDALASXYRRQL 282 (287)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHH
Confidence 6666666666665543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=7.9e-10 Score=88.32 Aligned_cols=146 Identities=9% Similarity=-0.048 Sum_probs=117.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 044044 113 LFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR 192 (508)
Q Consensus 113 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (508)
|...+...|++++|++.++...... +.+...+..+...|.+.|++++|++.|+++++.. +.+..+|..+..+|.+.|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 4455667889999999999987642 2234456778899999999999999999998874 4578899999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHH-HHHHHhCCCCCCccccCCHhHHHHHHHHHHccCC
Q 044044 193 IMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNL-FEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGF 268 (508)
Q Consensus 193 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 268 (508)
+++|+..|++..+.. +.+..+|..+...|.+.|++++|.+. +++..+.+ |.+..+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-------P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-------PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHhCc
Confidence 999999999999875 44688999999999999999887665 58887764 4567788888777777764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.8e-08 Score=84.61 Aligned_cols=188 Identities=9% Similarity=-0.026 Sum_probs=116.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HhHH
Q 044044 287 DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ-P-DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNT--YTYN 362 (508)
Q Consensus 287 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 362 (508)
+...+..+...+.+.|++++|+..|+++.+.... + ....+..+..++.+.|++++|...|+.+++....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666677788889999999999998875311 1 1346777788888999999999999988876432111 2444
Q ss_pred HHHHHHHc------------------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 044044 363 TLIDGYCL------------------TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGI 424 (508)
Q Consensus 363 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 424 (508)
.+..++.. .|+.++|...|+++++.. +.+...+........ +...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~----------~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVF----------LKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHH----------HHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHH----------HHHHH-----
Confidence 44455543 344555555555555442 112211111100000 00000
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044044 425 KPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAAD--TYTYNNFIDGLCKSGFVLEALELFRAIRDSK 493 (508)
Q Consensus 425 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 493 (508)
......+...+...|++++|+..|+++.+...... ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 00113456778889999999999999987532211 2467788889999999999999999887653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=8.1e-09 Score=92.47 Aligned_cols=167 Identities=14% Similarity=0.054 Sum_probs=117.3
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044044 320 QPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTL 399 (508)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 399 (508)
+.+...+..+...+...|++++|...++++.+... .+...+..+...+.+.|++++|...++++.... |+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 33445566667777788888888888888777642 256677777788888888888888888776653 444333222
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 044044 400 -INWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAA-DTYTYNNFIDGLCKSG 477 (508)
Q Consensus 400 -~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 477 (508)
...+...++.++|+..+++..+..+ .+...+..+...+...|++++|+..|+++.+..... +...+..++..|...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2335566777778888888777643 366777788888888888888888888887753221 2567778888888888
Q ss_pred CHHHHHHHHHHHH
Q 044044 478 FVLEALELFRAIR 490 (508)
Q Consensus 478 ~~~~A~~~~~~m~ 490 (508)
+.++|...|++.+
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888888877765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.01 E-value=5.6e-08 Score=83.55 Aligned_cols=188 Identities=10% Similarity=-0.006 Sum_probs=130.0
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCH-HhHH
Q 044044 252 NTVTYNTIIDGLCKEGFVDKAKELFLKMKDENIN-P-DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ-PDV-VTFS 327 (508)
Q Consensus 252 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~-~~~~ 327 (508)
+...+..++..+.+.|++++|...|+++.+.... + ....+..+..++.+.|++++|+..|+++.+.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4556677888899999999999999999875322 1 1356788889999999999999999999986321 111 2444
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 044044 328 VIMDELCK------------------NGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGC 389 (508)
Q Consensus 328 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 389 (508)
.+..++.. .|++++|...|+.+++.... +...+...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH----
Confidence 55555554 57899999999999976322 22222221110 00111111
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 390 MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPT--VVTYNTLFLGLFEIHQVERALKLFDEMRRNH 458 (508)
Q Consensus 390 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (508)
.....+...|.+.|++++|+..|+++++..+... ...+..+..++.+.|+.++|++.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1123467778889999999999999988632211 2467888899999999999999999888764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-08 Score=101.10 Aligned_cols=155 Identities=9% Similarity=-0.075 Sum_probs=116.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHH
Q 044044 301 ANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKL 380 (508)
Q Consensus 301 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 380 (508)
.|++++|++.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887763 4457788888999999999999999999998764 23578888899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 044044 381 FVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI---HQVERALKLFDEMRRN 457 (508)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 457 (508)
+++..+.. +.+...+..+..+|...|++++|.+.++++.+... .+...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988875 55788899999999999999999999999988643 3677888899999999 9999999999999886
Q ss_pred CC
Q 044044 458 HV 459 (508)
Q Consensus 458 ~~ 459 (508)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 43
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=6e-07 Score=80.86 Aligned_cols=172 Identities=10% Similarity=-0.008 Sum_probs=142.3
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-C-CcchHH
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNK-HYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKM-G-RVSHGF 162 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~a~ 162 (508)
..++|+++++.++..+|. +..+|+.-..++...| .+++++.+++.+.... +-+..+|+.-..++... + ++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA--HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 457899999999999998 9999999999999888 5999999999999875 55778888888777776 7 889999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHH--------HHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCC-------
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIM--------EAAALFTKHRVFACEPDVFTYNTLINGLCRTGH------- 227 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------- 227 (508)
++++++++.. +-|..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|..+|+.....+.+.+.
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 9999998764 447778877666666666666 9999999999876 5588899998888888876
Q ss_pred hHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCH
Q 044044 228 TIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFV 269 (508)
Q Consensus 228 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 269 (508)
++++++.++++.... +-|...|+.+-..+.+.|+.
T Consensus 224 ~~eELe~~~~aI~~~-------P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-------PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCC
Confidence 689999999988875 56788898877777776653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.5e-07 Score=81.39 Aligned_cols=164 Identities=12% Similarity=0.047 Sum_probs=122.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC-CCCH----HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC-CC----HHHHH
Q 044044 328 VIMDELCKNGKMDKASRLLELMIWRGV-NPNT----YTYNTLIDGYCLTDKIDHARKLFVSMESNGCM-HD----VVSYN 397 (508)
Q Consensus 328 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~ 397 (508)
..+..+...|++++|..+++...+... .++. ..+..+...+...|++++|...++++.+.... .+ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999887432 2221 13334667777888999999999998874222 22 34688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHH
Q 044044 398 TLINWYCKNKDVEEALSLYSEMLSK-----GIKP-TVVTYNTLFLGLFEIHQVERALKLFDEMRRN----HVAAD-TYTY 466 (508)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~ 466 (508)
.++.+|...|++++|+..|+++++. +..+ ...++..+..+|...|++++|++.+++..+. +..+. ...|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999999998842 1112 2337888999999999999999999887742 22222 5688
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHH
Q 044044 467 NNFIDGLCKSGF-VLEALELFRAIRD 491 (508)
Q Consensus 467 ~~li~~~~~~g~-~~~A~~~~~~m~~ 491 (508)
..+..+|.+.|+ +++|.+.|++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 889999999994 6999999988863
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.3e-08 Score=85.27 Aligned_cols=186 Identities=8% Similarity=-0.074 Sum_probs=108.3
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHH-------HHHHHhcCChhHHHHHHHHHHhCCCCCC---------------
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNIL-------FGCLAKNKHYDTVLSLFKRLNSAGLFPD--------------- 141 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------- 141 (508)
.++++.|++.|.++.+.+|. ....|..+ ..++...++..+++..+..-.+ +.|+
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred CCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 58999999999999999998 88899988 5667777777777766666554 2222
Q ss_pred -------HHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC--H
Q 044044 142 -------IYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPD--V 212 (508)
Q Consensus 142 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~ 212 (508)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1222334455556666666666666555432 222244444445556666666666665443321 110 2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccC--CHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 213 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP--NTVTYNTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
..+..+..++...|++++|+..|++..... ..| ..........++.+.|+.++|...|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~------~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSP------AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTST------TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCC------CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 245555566666666666666666655322 112 2234444555555666666666666666553
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.88 E-value=6.3e-07 Score=80.44 Aligned_cols=163 Identities=9% Similarity=-0.014 Sum_probs=96.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCH----hHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC-CC----
Q 044044 217 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT----VTYNTIIDGLCKEGFVDKAKELFLKMKDENIN-PD---- 287 (508)
Q Consensus 217 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~---- 287 (508)
..+..+...|++++|..++++...... ..++. ..+..+...+...|++++|...|+++.+.... .+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEE-----YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCC-----CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 346677888999999999999887542 12231 13334666777778888888888888764222 12
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC
Q 044044 288 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-----GVQPD-VVTFSVIMDELCKNGKMDKASRLLELMIWR----GVNPN 357 (508)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~ 357 (508)
..+++.+...|...|++++|+..|+++.+. +..+. ..++..+...|.+.|++++|...+++.++. +..+.
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 225777777777888888888887777631 11111 124555566666666666666666555432 11111
Q ss_pred -HHhHHHHHHHHHcCC-CHHHHHHHHHHH
Q 044044 358 -TYTYNTLIDGYCLTD-KIDHARKLFVSM 384 (508)
Q Consensus 358 -~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 384 (508)
..+|..+..+|.+.| ++++|.+.+++.
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 344555555555555 245555555444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.6e-06 Score=78.18 Aligned_cols=173 Identities=9% Similarity=-0.031 Sum_probs=106.1
Q ss_pred cCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-C
Q 044044 225 TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG-FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYA-N 302 (508)
Q Consensus 225 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g 302 (508)
.+..++|+++++++...+ +.+..+|+.-..++...| .+++++++++.+..... -+..+|+.-...+.+. +
T Consensus 67 ~e~se~AL~lt~~~L~~n-------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcC
Confidence 344466777777777754 345566776666666666 47777777777776532 2555666555555444 5
Q ss_pred -CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChh--------HHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCC
Q 044044 303 -DWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMD--------KASRLLELMIWRGVNPNTYTYNTLIDGYCLTDK 373 (508)
Q Consensus 303 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 373 (508)
++++++++++++.+.. +-|...|+.-.-++.+.|.++ ++++.++++++.... |...|+.....+.+.++
T Consensus 139 ~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp SCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTT
T ss_pred CChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 6677777777776653 335556655554555444444 677777777766433 66666666666666654
Q ss_pred -------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044044 374 -------IDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD 408 (508)
Q Consensus 374 -------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 408 (508)
++++.+.+++++... +-|...|+.+-..+.+.|+
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 566666666666554 5566666666555555544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-08 Score=82.20 Aligned_cols=127 Identities=10% Similarity=0.099 Sum_probs=104.9
Q ss_pred cCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHhc
Q 044044 77 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINC-FCKM 155 (508)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 155 (508)
.+..+...|++++|+..|+.+++..|. +...|..+..++...|++++|+..|+++.+.. +.+...+..+..+ +...
T Consensus 16 ~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 16 PLHQFASQQNPEAQLQALQDKIRANPQ--NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQA 92 (177)
T ss_dssp TTCCCC-----CCCCHHHHHHHHHCCS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHT
T ss_pred hhhhhhhccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 345567789999999999999999887 88899999999999999999999999998764 4467788888888 7789
Q ss_pred CCc--chHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 044044 156 GRV--SHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFA 207 (508)
Q Consensus 156 g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 207 (508)
|++ ++|...++++++.. +.+...+..+...+...|++++|...|+++....
T Consensus 93 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 998 99999999998864 3467788888999999999999999999988764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-07 Score=79.77 Aligned_cols=126 Identities=17% Similarity=0.011 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL 370 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (508)
+..+...+...|++++|+..|++.. .++...+..+..++...|++++|...++.+++.. +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555666666666666665552 3455566666666666666666666666666553 2245566666666666
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 371 TDKIDHARKLFVSMESNGCMHDV----------------VSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
.|++++|...|+++.+.. +.+. ..+..+..++...|++++|...|+++.+.
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666666543 2222 45555666666666666666666666654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-07 Score=79.84 Aligned_cols=130 Identities=11% Similarity=0.026 Sum_probs=106.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044044 324 VTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWY 403 (508)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (508)
..+..+...+...|++++|...++++. .|+...+..+...|...|++++|...+++..+.. +.+...|..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345566778888999999999988763 5578888889999999999999999999888765 56778888899999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC---------------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 404 CKNKDVEEALSLYSEMLSKGIKP---------------TVVTYNTLFLGLFEIHQVERALKLFDEMRRNH 458 (508)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p---------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (508)
...|++++|+..|+++.+..... ....+..+..++...|++++|.+.|++..+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999988864321 12677888888999999999999999888753
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.85 E-value=8.3e-08 Score=73.78 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 044044 361 YNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE 440 (508)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 440 (508)
+......|.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|+..+++.++.... +...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Confidence 3334444444444444444444444432 334444444444444444444444444444443211 33444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 044044 441 IHQVERALKLFDEMRR 456 (508)
Q Consensus 441 ~g~~~~a~~~~~~~~~ 456 (508)
.|++++|++.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4444444444444444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-07 Score=75.89 Aligned_cols=129 Identities=12% Similarity=0.058 Sum_probs=86.1
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGL 438 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (508)
..+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|+..+++..+... .+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 345556666677777777777777766653 44566777777777777777777777777776532 2566677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 044044 439 FEIHQVERALKLFDEMRRNHVAADTYTYN--NFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
...|++++|.+.++++.+... .+...+. ..+..+.+.|++++|++.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 777788888877777776532 2444443 33333667778888887777654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-06 Score=78.46 Aligned_cols=166 Identities=11% Similarity=0.008 Sum_probs=108.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-----HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC---CCC--HH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNT-----YTYNTLIDGYCLTDKIDHARKLFVSMESNGC---MHD--VV 394 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~ 394 (508)
.+...+..+...|++++|.+.+....+....... ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566677778888888887777665322111 1233455566777888888888887765321 111 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---CCC-CC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CH
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEMLS---KGI-KP--TVVTYNTLFLGLFEIHQVERALKLFDEMRRN----HVAA-DT 463 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~-~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~ 463 (508)
+|+.++..|...|++++|+..++++.+ ... .+ ...++..++.+|...|++++|++.+++..+. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677888888888888888888887763 211 11 1247777888888888888888888877643 1111 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 044044 464 YTYNNFIDGLCKSGFVLEA-LELFRAIR 490 (508)
Q Consensus 464 ~~~~~li~~~~~~g~~~~A-~~~~~~m~ 490 (508)
.+|..+..+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5677788888888888888 66677654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.79 E-value=7.4e-08 Score=81.14 Aligned_cols=84 Identities=13% Similarity=0.083 Sum_probs=35.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHcCCCH
Q 044044 300 YANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWR----GVNP-NTYTYNTLIDGYCLTDKI 374 (508)
Q Consensus 300 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~ 374 (508)
..|++++|.++++.+... .......+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 1122334444555555555555555555554431 0011 122344444444445555
Q ss_pred HHHHHHHHHH
Q 044044 375 DHARKLFVSM 384 (508)
Q Consensus 375 ~~A~~~~~~~ 384 (508)
++|.+.+++.
T Consensus 83 ~~A~~~~~~a 92 (203)
T 3gw4_A 83 DAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.1e-07 Score=70.53 Aligned_cols=96 Identities=14% Similarity=0.035 Sum_probs=67.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYC 404 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (508)
.+......+.+.|++++|...|+++++.. +.+...|..+..+|.+.|++++|+..+++.++.+ +.+...|..++.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 45556666777777777777777776653 2256667777777777777777777777776654 456667777777777
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 044044 405 KNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~ 422 (508)
..|++++|++.|++.++.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 777777777777777765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.4e-07 Score=80.90 Aligned_cols=175 Identities=10% Similarity=-0.008 Sum_probs=127.2
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-H----HhHHHHHHHHHhcCCcchHHHHHHHHHhCCC---CCC-
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD-I----YTHSILINCFCKMGRVSHGFVVLGRILRSCF---TPN- 176 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~- 176 (508)
....+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|+..+++.+.... .+.
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 344566677888999999999999998877532211 1 2234455667788999999999999876421 112
Q ss_pred -HHhHHHHHHHHHhcCCHHHHHHHHHHhhhcC-CCCC-----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccc
Q 044044 177 -AVTFTSLIKGLCAESRIMEAAALFTKHRVFA-CEPD-----VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 249 (508)
Q Consensus 177 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 249 (508)
..+++.+...|...|++++|+..|++..... ..++ ..++..+...|...|++++|+..+++........+ ..
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~-~~ 232 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN-SM 232 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-BC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC-cH
Confidence 4578899999999999999999999877320 0112 25888999999999999999999998875321000 01
Q ss_pred cCCHhHHHHHHHHHHccCCHHHH-HHHHHHHhh
Q 044044 250 KPNTVTYNTIIDGLCKEGFVDKA-KELFLKMKD 281 (508)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 281 (508)
..-..+|..+..+|.+.|++++| ...+++...
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 11256788899999999999999 777777653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3e-08 Score=78.75 Aligned_cols=108 Identities=6% Similarity=-0.095 Sum_probs=81.4
Q ss_pred HHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCC
Q 044044 95 DYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFT 174 (508)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 174 (508)
+++++..|. +...+..+...+.+.|++++|+..|+++.+.. +.+...|..+..++...|++++|+..|+++++.. +
T Consensus 26 ~~al~l~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P 101 (151)
T 3gyz_A 26 KDINAIPDD--MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-K 101 (151)
T ss_dssp GGGCCSCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred HHHhCCCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-C
Confidence 344444444 66677778888888888888888888887764 4467778888888888888888888888887764 3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 044044 175 PNAVTFTSLIKGLCAESRIMEAAALFTKHRVF 206 (508)
Q Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (508)
.+...|..+..+|...|++++|+..|++....
T Consensus 102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35677777888888888888888888887776
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.76 E-value=4.6e-07 Score=73.32 Aligned_cols=128 Identities=13% Similarity=0.005 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYC 404 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (508)
.+..+...+...|++++|...++..++.. +.+...+..+...+...|++++|...+++..+.. +.+...|..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 45555666667777777777777766653 2246667777777777777777777777776654 445667777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 044044 405 KNKDVEEALSLYSEMLSKGIKPTVVTYN--TLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
..|++++|...++++.+.... +...+. .++..+...|++++|++.+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 777888888777777765322 333442 33333666777777777776554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.8e-07 Score=78.21 Aligned_cols=187 Identities=6% Similarity=-0.100 Sum_probs=116.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHH-------HHHHHhcCCcchHHHHHHHHHhCCCCCC---------------
Q 044044 119 KNKHYDTVLSLFKRLNSAGLFPDIYTHSIL-------INCFCKMGRVSHGFVVLGRILRSCFTPN--------------- 176 (508)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------- 176 (508)
..++...|.+.|.++.+.. +-....|..+ ...+...++..+++..+...+.. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 5788999999999988764 4456777777 45666666666666666555441 111
Q ss_pred -------HHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccc
Q 044044 177 -------AVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 249 (508)
Q Consensus 177 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 249 (508)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+......
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~------- 165 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP------- 165 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-------
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-------
Confidence 1233445566677777777777777766543 332255556667777777777777776443321
Q ss_pred cCC--HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 250 KPN--TVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPD--VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 250 ~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
.|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 111 23566667777777777777777777764322132 234455555666777777777777777765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.74 E-value=7.5e-08 Score=81.12 Aligned_cols=158 Identities=11% Similarity=-0.028 Sum_probs=117.4
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHhcC
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSA----GLF-PDIYTHSILINCFCKMG 156 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g 156 (508)
+..|++++|.+.++.+.. .|. ....++..+...+...|++++|+..+++..+. +.. .....+..+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPA-TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STT-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC-ChH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 457899999996665544 332 36678899999999999999999999998652 112 23456788889999999
Q ss_pred CcchHHHHHHHHHhC----CCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCC-CCC----HhhHHHHHHHHHhc
Q 044044 157 RVSHGFVVLGRILRS----CFT--PNAVTFTSLIKGLCAESRIMEAAALFTKHRVFAC-EPD----VFTYNTLINGLCRT 225 (508)
Q Consensus 157 ~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~ 225 (508)
++++|...+++..+. +.. .....+..+...+...|++++|...+++...... ..+ ..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999987653 211 1245678888999999999999999998764311 112 23467888999999
Q ss_pred CChHHHHHHHHHHHhC
Q 044044 226 GHTIVALNLFEEMANG 241 (508)
Q Consensus 226 g~~~~A~~~~~~~~~~ 241 (508)
|++++|...+++....
T Consensus 161 g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999887653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-08 Score=93.58 Aligned_cols=152 Identities=15% Similarity=0.048 Sum_probs=125.4
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---------------HHhHHHH
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD---------------IYTHSIL 148 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l 148 (508)
.+++++|+..|+...+..|. +...|..+...+.+.|++++|+..|++..+.. +.+ ...|..+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~--~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLE--QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHH
Confidence 34566677777666665554 67789999999999999999999999998764 222 5789999
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCCh
Q 044044 149 INCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHT 228 (508)
Q Consensus 149 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 228 (508)
..++.+.|++++|+..++++++.. +.+...+..+..+|...|++++|+..|++..... +.+..++..+..++...|++
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998874 4578889999999999999999999999998875 44678899999999999999
Q ss_pred HHH-HHHHHHHHh
Q 044044 229 IVA-LNLFEEMAN 240 (508)
Q Consensus 229 ~~A-~~~~~~~~~ 240 (508)
++| ...|+.|..
T Consensus 281 ~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 281 LAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 988 446666643
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.74 E-value=6e-08 Score=86.44 Aligned_cols=194 Identities=11% Similarity=-0.024 Sum_probs=103.1
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhh
Q 044044 211 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVT 290 (508)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 290 (508)
+...+..+...+...|++++|+..|++..... +.+...|..+..++.+.|++++|...+++..+.. +.+...
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 74 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKA 74 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHH
Confidence 34455566666666667777777666666643 3355666666666667777777777776666542 224556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPD-VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYC 369 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (508)
+..+..++...|++++|...|++..+.. |+ ...+...+....+ ..++.. +..........+......+...
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l-- 146 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL-- 146 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--
Confidence 6666666777777777777776665531 11 0011111111111 111111 1112222233344443333322
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 044044 370 LTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKN-KDVEEALSLYSEMLS 421 (508)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 421 (508)
..|+.++|.+.++...+.. +.+......+...+.+. +.+++|.++|.++.+
T Consensus 147 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 147 IAAERERELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 2577778887777776653 23333334444444444 567778888877665
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.74 E-value=6.1e-07 Score=68.41 Aligned_cols=97 Identities=15% Similarity=0.218 Sum_probs=52.1
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGL 438 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (508)
..+..+...+...|++++|.+.++++.+.. +.+...+..++..+...|++++|+..++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344455555555555555555555555442 3344555555555555555666655555555542 12444555555555
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 044044 439 FEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~ 457 (508)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5556666666665555543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-07 Score=75.07 Aligned_cols=98 Identities=16% Similarity=-0.021 Sum_probs=61.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHH
Q 044044 177 AVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTY 256 (508)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (508)
...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|+..|++....+ +.+...|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-------P~~~~~~ 107 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-------KNDYTPV 107 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------SSCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-------CCCcHHH
Confidence 3445555666666666666666666666553 3356666666666666666666666666666653 3345566
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 257 NTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
..+..+|...|++++|...|++..+.
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666666666654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=5.9e-06 Score=74.08 Aligned_cols=183 Identities=9% Similarity=-0.037 Sum_probs=143.7
Q ss_pred HHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 044044 88 NEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKH----------YDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGR 157 (508)
Q Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 157 (508)
++|+.+++.++..+|. +..+|+.-..++...+. +++++.+++.+.... +-+..+|+.-.-++...|+
T Consensus 47 ~eaL~~t~~~L~~nP~--~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 47 ESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 123 (331)
T ss_dssp HHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHCch--hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCc
Confidence 5899999999999998 88899987777766554 688999999998864 5578888888888888884
Q ss_pred --cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhc---------
Q 044044 158 --VSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR-IMEAAALFTKHRVFACEPDVFTYNTLINGLCRT--------- 225 (508)
Q Consensus 158 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 225 (508)
+++++.+++++++.. +-|..+|+.-.-.+...|. ++++++.++++.... +.|..+|+.....+.+.
T Consensus 124 ~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 124 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC-----
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccc
Confidence 789999999999875 4578888888777788888 699999999999876 55888888777766654
Q ss_pred -----CChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHcc-----------CCHHHHHHHHHHHhhC
Q 044044 226 -----GHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKE-----------GFVDKAKELFLKMKDE 282 (508)
Q Consensus 226 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~ 282 (508)
+.++++++.++.....+ |-|...|+-+-..+.+. +.++++++.++++.+.
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~-------P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTD-------PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 45789999999998875 56788887665555554 3356666666666653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=4.8e-07 Score=69.68 Aligned_cols=119 Identities=10% Similarity=0.013 Sum_probs=73.0
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLG 437 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 437 (508)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|+..+++..+... .+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 3445555566666666666666666665543 34556666666666667777777777766666432 245566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044044 438 LFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFV 479 (508)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 479 (508)
+...|++++|.+.+++..+.. +.+...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 777777777777777666542 22455556666666655543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=4e-07 Score=70.51 Aligned_cols=95 Identities=13% Similarity=0.103 Sum_probs=41.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF 439 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (508)
.+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|+..++++.+... .+...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHHH
Confidence 33444444444444444444444444332 22344444444444444444444444444444321 13334444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 044044 440 EIHQVERALKLFDEMRR 456 (508)
Q Consensus 440 ~~g~~~~a~~~~~~~~~ 456 (508)
..|++++|++.+++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44444444444444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.70 E-value=7.3e-08 Score=85.87 Aligned_cols=195 Identities=9% Similarity=-0.034 Sum_probs=117.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhH
Q 044044 176 NAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVT 255 (508)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 255 (508)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..++.+.|++++|+..+++....+ +.+...
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~ 74 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------GQSVKA 74 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-------TTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHH
Confidence 45566677777778888888888888877663 3367777888888888888888888888887764 445677
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 044044 256 YNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCK 335 (508)
Q Consensus 256 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 335 (508)
+..+..++...|++++|...|++..+.... +...+...+....+. .++.. +........+.+......+... .
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~ 147 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--I 147 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--H
Confidence 788888888888888888888877653110 000111111111111 11111 1112222233344433333222 2
Q ss_pred cCChhHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHcC-CCHHHHHHHHHHHHhC
Q 044044 336 NGKMDKASRLLELMIWRGVNPN-TYTYNTLIDGYCLT-DKIDHARKLFVSMESN 387 (508)
Q Consensus 336 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 387 (508)
.|++++|.+.++.+.+. .|+ ......+...+.+. +.+++|.++|.++.+.
T Consensus 148 ~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 AAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 57888888888777754 344 33334444444444 6678888888877653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=5.3e-08 Score=77.34 Aligned_cols=110 Identities=11% Similarity=-0.001 Sum_probs=78.6
Q ss_pred HHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 044044 93 IFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSC 172 (508)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 172 (508)
.|+.++...|. +...+..+...+...|++++|+..|+++.+.. +.+...|..+..++...|++++|+..|++++...
T Consensus 9 ~~~~al~~~p~--~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEISSD--TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCCHh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45555555554 66677777777888888888888888877653 4466777777777778888888888887777653
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 044044 173 FTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF 206 (508)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (508)
+.+...+..+..+|...|++++|+..|++....
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 335566777777777778888887777777655
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-07 Score=75.27 Aligned_cols=98 Identities=11% Similarity=-0.098 Sum_probs=73.3
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLG 437 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 437 (508)
...+..+...+...|++++|...|+++.... +.+...|..+..+|...|++++|+..|++++...+. +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 4556667777778888888888888777664 557777777888888888888888888887776432 55667777788
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 044044 438 LFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~ 457 (508)
+...|++++|++.|++..+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888877764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.7e-07 Score=74.98 Aligned_cols=119 Identities=9% Similarity=0.052 Sum_probs=62.4
Q ss_pred cCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHH-HHhcCCh--HHH
Q 044044 155 MGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLING-LCRTGHT--IVA 231 (508)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A 231 (508)
.|++++|...+++..+.. +.+...+..+...|...|++++|+..|++..... +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 345555555555554432 2344555555555555566666666555555443 2244455555555 4555665 666
Q ss_pred HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 232 LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
+..|+++...+ +.+...+..+..++...|++++|...|+++.+.
T Consensus 101 ~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALD-------SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666655543 233455555566666666666666666665554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.2e-07 Score=68.99 Aligned_cols=118 Identities=13% Similarity=0.012 Sum_probs=82.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044044 322 DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLIN 401 (508)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (508)
+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44566667777777788888888887777653 2256677777777888888888888887777654 446777777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 044044 402 WYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIH 442 (508)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 442 (508)
++...|++++|+..|++..+.... +...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 888888888888888887765322 3445555555555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.67 E-value=5.1e-07 Score=82.68 Aligned_cols=123 Identities=10% Similarity=-0.115 Sum_probs=63.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--------------HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPN--------------TYTYNTLIDGYCLTDKIDHARKLFVSMESNG 388 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (508)
...+..+...+.+.|++++|...|+++++...... ...|..+..+|.+.|++++|...++++++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44566666667777777777777777666532211 2444444555555555555555555544443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 044044 389 CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERA 447 (508)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 447 (508)
+.+...|..+..+|...|++++|+..|+++++.... +...+..+..++...|+.++|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555443211 333444444444444444444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-06 Score=66.43 Aligned_cols=112 Identities=17% Similarity=0.167 Sum_probs=62.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044044 324 VTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWY 403 (508)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (508)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344555555556666666666666555542 2244555556666666666666666666665543 34555666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 044044 404 CKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGL 438 (508)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (508)
...|++++|...++++.+... .+...+..+...+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 666666666666666665422 1333444444333
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=8.5e-07 Score=68.25 Aligned_cols=57 Identities=9% Similarity=0.004 Sum_probs=21.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 183 LIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
+...+...|++++|+..|++..... +.+...+..+...+...|++++|+..+++...
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence 3333333444444444444333321 11233333344444444444444444444333
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.7e-07 Score=73.87 Aligned_cols=110 Identities=10% Similarity=-0.027 Sum_probs=82.2
Q ss_pred HHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 044044 93 IFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSC 172 (508)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 172 (508)
.|+++++..|. +...+..+...+.+.|++++|+..|+++.... +.+...|..+..++...|++++|+..+++++...
T Consensus 6 ~l~~al~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 6 TLAMLRGLSED--TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ---CCTTCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHcCCHH--HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44555555544 56667777788888888888888888887764 4567778888888888888888888888887764
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 044044 173 FTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF 206 (508)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (508)
+.+...+..+..++...|++++|+..|++....
T Consensus 83 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 83 -INEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345667777888888888888888888887765
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.60 E-value=9.5e-07 Score=67.90 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 361 YNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
+..+...+.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|++.+++.++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444444555555555554444432 33444444445555555555555555544443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=1e-06 Score=67.65 Aligned_cols=109 Identities=16% Similarity=0.108 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHH
Q 044044 393 VVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH--VAAD----TYTY 466 (508)
Q Consensus 393 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~ 466 (508)
...+..++..+.+.|++++|+..|+++++..+. +...|..+..+|...|++++|++.+++..+.+ ..++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 346778999999999999999999999987433 67889999999999999999999999988642 1122 2467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHHHHHHH
Q 044044 467 NNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCL 504 (508)
Q Consensus 467 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 504 (508)
..+..++...|++++|++.|++.+.. .||..+...|
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 77888999999999999999999864 4666655544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=7.8e-05 Score=66.85 Aligned_cols=96 Identities=7% Similarity=-0.043 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCC-H
Q 044044 193 IMEAAALFTKHRVFACEPDVFTYNTLINGLCRTG--HTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGF-V 269 (508)
Q Consensus 193 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~ 269 (508)
+++++.+++.+.... +.+..+|+.-.-++...| .+++++.+++.+.+.+ +.|-.+|+.-.-+....|. +
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-------prNy~AW~~R~~vl~~l~~~~ 161 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAP 161 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCcCH
Confidence 345555555555443 234455555544444444 2555666666555553 3455555555555555555 3
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 044044 270 DKAKELFLKMKDENINPDVVTYTSVIRG 297 (508)
Q Consensus 270 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 297 (508)
+++++.++++.+..+ -|...|+.....
T Consensus 162 ~eel~~~~~~I~~~p-~N~SAW~~R~~l 188 (331)
T 3dss_A 162 AEELAFTDSLITRNF-SNYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 555555555555432 244444444333
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=9.9e-08 Score=80.15 Aligned_cols=88 Identities=15% Similarity=-0.101 Sum_probs=50.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHH
Q 044044 178 VTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYN 257 (508)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (508)
.++..+..++...|++++|+..+++..... +.+..++..+..++...|++++|++.|++..... +.+...+.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~ 160 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-------PNNLDIRN 160 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHH
Confidence 455556666666666666666666665553 3345566666666666666666666666666543 23445555
Q ss_pred HHHHHHHccCCHHHHH
Q 044044 258 TIIDGLCKEGFVDKAK 273 (508)
Q Consensus 258 ~l~~~~~~~g~~~~a~ 273 (508)
.+..++...++.+++.
T Consensus 161 ~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 161 SYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555444444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-06 Score=83.05 Aligned_cols=197 Identities=10% Similarity=-0.052 Sum_probs=141.1
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCc---------------ccHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHH---
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPV---------------SSFNILFGCLAKNKHYDTVLSLFKRLNSAG-LFPDIY--- 143 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~--- 143 (508)
..|++++|++.|..+++..+...+. .++..++..|...|++++|.+.+..+.+.- ..++..
T Consensus 16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 95 (434)
T 4b4t_Q 16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVK 95 (434)
T ss_dssp HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHH
Confidence 4579999999999999988763332 137789999999999999999999876431 112221
Q ss_pred -hHHHHHHHHHhcCCcchHHHHHHHHHh----CCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC----C-CH
Q 044044 144 -THSILINCFCKMGRVSHGFVVLGRILR----SCFTP-NAVTFTSLIKGLCAESRIMEAAALFTKHRVFACE----P-DV 212 (508)
Q Consensus 144 -~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~-~~ 212 (508)
..+.+...+...|+++.|..+++.... .+..+ -..++..+...|...|++++|..+++++...-.. + ..
T Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 175 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLV 175 (434)
T ss_dssp HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHH
Confidence 223333444567889999999888764 22222 3457788999999999999999999987643111 1 24
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC--HhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 044044 213 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN--TVTYNTIIDGLCKEGFVDKAKELFLKMKD 281 (508)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (508)
.++..++..|...|++++|..++++......... .++. ...+..++..+...|++++|...|.+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 176 DVHLLESKVYHKLRNLAKSKASLTAARTAANSIY--CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC--CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5788999999999999999999998765321110 1111 34566777788889999999988877654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-06 Score=66.81 Aligned_cols=94 Identities=17% Similarity=0.140 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 044044 361 YNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE 440 (508)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 440 (508)
+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..+++.++.... +...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 3334444444444445544444444432 334444444444444555555555555444443211 33444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 044044 441 IHQVERALKLFDEMRR 456 (508)
Q Consensus 441 ~g~~~~a~~~~~~~~~ 456 (508)
.|++++|++.|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 4555555544444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.2e-06 Score=67.21 Aligned_cols=98 Identities=15% Similarity=0.095 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044044 393 VVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDG 472 (508)
Q Consensus 393 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 472 (508)
...|..+...+...|++++|+..|++.++... .+...|..+..++...|++++|+..+++..+.+ +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 45677888999999999999999999998743 367889999999999999999999999999874 3368889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 044044 473 LCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 473 ~~~~g~~~~A~~~~~~m~~~ 492 (508)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999999864
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=4e-06 Score=62.98 Aligned_cols=94 Identities=16% Similarity=0.082 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 044044 361 YNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE 440 (508)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 440 (508)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+... .+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence 3444444444555555555554444432 22444444444445555555555555554444321 133444444444555
Q ss_pred cCCHHHHHHHHHHHHH
Q 044044 441 IHQVERALKLFDEMRR 456 (508)
Q Consensus 441 ~g~~~~a~~~~~~~~~ 456 (508)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555554444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=84.60 Aligned_cols=124 Identities=9% Similarity=0.001 Sum_probs=102.9
Q ss_pred hhccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 74 CKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFC 153 (508)
Q Consensus 74 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (508)
....|..+...|++++|+..|+++++..|. +..+|..+..++.+.|++++|++.+++..+.. +.+...+..+..++.
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 85 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 345677888999999999999999999887 88999999999999999999999999999874 557888999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHH--HHhcCCHHHHHHHHH
Q 044044 154 KMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKG--LCAESRIMEAAALFT 201 (508)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 201 (508)
..|++++|.+.++++++.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999998864 2344556556555 888899999999998
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.2e-06 Score=71.77 Aligned_cols=95 Identities=17% Similarity=0.039 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044044 394 VSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGL 473 (508)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 473 (508)
..|..+..+|...|++++|+..++++++... .+...+..+..++...|++++|++.|++..+.. +.+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 5566667777777777777777777776532 255666777777777777777777777776652 23555666666666
Q ss_pred HhcCCHHHHH-HHHHHHH
Q 044044 474 CKSGFVLEAL-ELFRAIR 490 (508)
Q Consensus 474 ~~~g~~~~A~-~~~~~m~ 490 (508)
...|+.+++. ..|..|.
T Consensus 167 ~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 6666666555 4444444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-06 Score=64.11 Aligned_cols=98 Identities=14% Similarity=-0.014 Sum_probs=54.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccC--CHh
Q 044044 177 AVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP--NTV 254 (508)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~ 254 (508)
...+..+...+...|++++|+..|++..... +.+...+..+...+...|++++|+..|++..... +. +..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~ 77 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-------EDEYNKD 77 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------CCTTCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------cccchHH
Confidence 3444555555555666666666666555543 2344555555666666666666666666655543 22 345
Q ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHhhC
Q 044044 255 TYNTIIDGLCKE-GFVDKAKELFLKMKDE 282 (508)
Q Consensus 255 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 282 (508)
.+..+..++... |++++|.+.+++....
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 555566666666 6666666666665544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.3e-06 Score=68.24 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=45.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF 439 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (508)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++.++.... +...|..+..++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34444444444555555555554444432 234444445555555555555555555555443211 3444445555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 044044 440 EIHQVERALKLFDEMRR 456 (508)
Q Consensus 440 ~~g~~~~a~~~~~~~~~ 456 (508)
..|++++|++.|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555555444
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=6.7e-06 Score=63.91 Aligned_cols=98 Identities=14% Similarity=0.042 Sum_probs=57.3
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 044044 357 NTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFL 436 (508)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 436 (508)
+...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|+..+++.++.... +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 34555555566666666666666666655543 334555666666666666666666666666654322 4555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 044044 437 GLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~ 456 (508)
++...|++++|+..|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666665554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2.3e-06 Score=67.25 Aligned_cols=95 Identities=18% Similarity=-0.008 Sum_probs=54.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF 439 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (508)
.+..+...+.+.|++++|...|+++...+ +.+...|..+..++...|++++|+..|++++...+. +...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 34444455556666666666666655543 345555666666666666666666666666654322 4445555666666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 044044 440 EIHQVERALKLFDEMRR 456 (508)
Q Consensus 440 ~~g~~~~a~~~~~~~~~ 456 (508)
..|++++|++.|++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=6.7e-06 Score=61.74 Aligned_cols=94 Identities=10% Similarity=-0.017 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHH
Q 044044 180 FTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTI 259 (508)
Q Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (508)
+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..... +.+...+..+
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~ 78 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-------PDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-------cccHHHHHHH
Confidence 3344444444455555555554444432 2234444444444445555555555555444432 2233444444
Q ss_pred HHHHHccCCHHHHHHHHHHHhh
Q 044044 260 IDGLCKEGFVDKAKELFLKMKD 281 (508)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~ 281 (508)
..++...|++++|.+.+++..+
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 4444455555555555544443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-05 Score=76.85 Aligned_cols=197 Identities=10% Similarity=-0.048 Sum_probs=108.8
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC
Q 044044 260 IDGLCKEGFVDKAKELFLKMKDENINPDV----------------VTYTSVIRGFCYANDWNEAKRLFIEMMDQG-VQPD 322 (508)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~ 322 (508)
...+.+.|++++|.+.|.++.+....... ..+..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567778888888888888775322110 125566777777777777777777665421 1111
Q ss_pred HH----hHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHhC--C---
Q 044044 323 VV----TFSVIMDELCKNGKMDKASRLLELMIWR----GVNPN-TYTYNTLIDGYCLTDKIDHARKLFVSMESN--G--- 388 (508)
Q Consensus 323 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--- 388 (508)
.. +.+.+...+...|+++.+..++...... +..+. ..++..+...|...|++++|..+++++... +
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 2222222333456667777666655431 22222 345566666666677777777666665432 0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-CC-C--HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 389 CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK--GI-KP-T--VVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-~p-~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
.+.....+..++..|...|++++|..++++.... .. .| . ...+..++..+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 0112345666666666677777777666665532 11 11 1 23344555556666666666666665554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.45 E-value=5.8e-06 Score=64.27 Aligned_cols=101 Identities=13% Similarity=0.019 Sum_probs=89.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044044 390 MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNF 469 (508)
Q Consensus 390 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 469 (508)
+.+...|..+...+...|++++|+..|++.++.... +...+..+..++...|++++|+..+++..+.+ +.+...|..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 457888999999999999999999999999987433 67889999999999999999999999999864 3468889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 044044 470 IDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 470 i~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
..+|...|++++|+..|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999853
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.7e-06 Score=63.32 Aligned_cols=99 Identities=8% Similarity=0.032 Sum_probs=70.5
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC--CHHhHHHH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTP--NAVTFTSL 183 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l 183 (508)
+...|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 56677777778888888888888888877653 3456667777777777777777777777776653 22 45666677
Q ss_pred HHHHHhc-CCHHHHHHHHHHhhhc
Q 044044 184 IKGLCAE-SRIMEAAALFTKHRVF 206 (508)
Q Consensus 184 ~~~~~~~-g~~~~A~~~~~~~~~~ 206 (508)
...+... |++++|++.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7777777 7777777777776655
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.1e-06 Score=65.99 Aligned_cols=97 Identities=11% Similarity=0.149 Sum_probs=55.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HhHHHH
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGI--KPT----VVTYNT 433 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~ 433 (508)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44455555566666666666666655543 33555556666666666666666666666555321 111 445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 434 LFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
+..++...|++++|.+.|+++.+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 666666666666666666666553
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.5e-06 Score=67.39 Aligned_cols=96 Identities=14% Similarity=0.011 Sum_probs=49.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHH
Q 044044 178 VTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYN 257 (508)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (508)
..+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|+..|++....+ +.+...|.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~ 83 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-------PKYSKAWS 83 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHH
Confidence 344444455555555555555555554443 2244455555555555555555555555555543 22344555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhh
Q 044044 258 TIIDGLCKEGFVDKAKELFLKMKD 281 (508)
Q Consensus 258 ~l~~~~~~~g~~~~a~~~~~~~~~ 281 (508)
.+..++...|++++|.+.|++..+
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555555555555555544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.3e-05 Score=63.19 Aligned_cols=97 Identities=10% Similarity=-0.052 Sum_probs=51.1
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHD----VVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNT 433 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 433 (508)
...+..+...+...|++++|...|++..+.. |+ ...|..+..+|...|++++|+..+++..+... .+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHHH
Confidence 4444555555555555555555555555442 33 34455555555555555555555555555421 13445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 434 LFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
+..++...|++++|.+.|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555555555555555555555543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=3.9e-06 Score=63.73 Aligned_cols=91 Identities=15% Similarity=-0.012 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044044 398 TLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSG 477 (508)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 477 (508)
.+...+.+.|++++|+..|+++++..+. +...|..+..++...|++++|+..|++..+... .+...+..+..++.+.|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 3444455555555555555555554222 444555555555555555555555555555421 24445555555555556
Q ss_pred CHHHHHHHHHHHH
Q 044044 478 FVLEALELFRAIR 490 (508)
Q Consensus 478 ~~~~A~~~~~~m~ 490 (508)
++++|+..|++.+
T Consensus 100 ~~~~A~~~~~~al 112 (121)
T 1hxi_A 100 NANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666666555555
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=3.7e-06 Score=63.89 Aligned_cols=93 Identities=11% Similarity=-0.048 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 044044 362 NTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI 441 (508)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 441 (508)
..+...+.+.|++++|...++++.+.. +.+...|..+..++...|++++|+..|++.++..+. +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 334455556666666666666665543 345556666666666666666666666666654322 445555666666666
Q ss_pred CCHHHHHHHHHHHHH
Q 044044 442 HQVERALKLFDEMRR 456 (508)
Q Consensus 442 g~~~~a~~~~~~~~~ 456 (508)
|++++|+..+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666666554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.5e-05 Score=62.68 Aligned_cols=98 Identities=11% Similarity=0.044 Sum_probs=65.1
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD----IYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFT 181 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 181 (508)
+...+..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|+..+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 5667777788888888888888888888765 344 4556666666666777777777666665542 22455555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhc
Q 044044 182 SLIKGLCAESRIMEAAALFTKHRVF 206 (508)
Q Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (508)
.+..++...|++++|...|++....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666666666666666665554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.35 E-value=4.3e-06 Score=64.22 Aligned_cols=113 Identities=13% Similarity=0.072 Sum_probs=86.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC----
Q 044044 177 AVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN---- 252 (508)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---- 252 (508)
...+..+...+...|++++|+..|++..... +.+...+..+...+...|++++|+..+++.....+. ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~ 78 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE----NREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----STTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc----cchhHHHH
Confidence 3566777888888899999999999888764 446778888999999999999999999998875310 0111
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 044044 253 TVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIR 296 (508)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 296 (508)
...+..+..++...|++++|.+.|+++.+. .|+......+..
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 667888888999999999999999988875 345544444433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.6e-06 Score=68.32 Aligned_cols=132 Identities=13% Similarity=0.035 Sum_probs=78.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CHh
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNGC-MHD----VVSYNTLINWYCKNKDVEEALSLYSEMLSKG----IKP-TVV 429 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~ 429 (508)
++..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|...+++..+.. ..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 444555555566666666666655543210 011 1345566666777777777777776665431 000 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDEMRRN----HVA-ADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.+..+...+...|++++|.+.+++..+. +.. .....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666777777777888777777766532 111 1134566677778888888888888887764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.5e-06 Score=66.91 Aligned_cols=138 Identities=12% Similarity=0.031 Sum_probs=82.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-CC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC
Q 044044 178 VTFTSLIKGLCAESRIMEAAALFTKHRVFACE-PD----VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN 252 (508)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 252 (508)
.++..+...+...|++++|+..+++....... .+ ..++..+...+...|++++|.+.+++........+. ....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-RAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-cHHH
Confidence 34556666677777777777777765543111 11 236677778888888888888888876653210000 1111
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHhhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 253 TVTYNTIIDGLCKEGFVDKAKELFLKMKDE----NIN-PDVVTYTSVIRGFCYANDWNEAKRLFIEMMD 316 (508)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 316 (508)
...+..+...+...|++++|.+.+++..+. +.. .....+..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445667777777888888888877776532 100 0123445555566666666666666665543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.4e-05 Score=78.30 Aligned_cols=174 Identities=10% Similarity=-0.047 Sum_probs=146.7
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKH----------YDTVLSLFKRLNSAGLFPDIYTHSILINCFCKM 155 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (508)
--++|++.++.++..+|. +..+|+.-..++...|+ ++++++.++.+.+.. +-+..+|..-.-++.+.
T Consensus 44 ~~eeal~~~~~~l~~nP~--~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 347899999999999998 89999998888888887 999999999999875 55788899888888899
Q ss_pred C--CcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhc-------
Q 044044 156 G--RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAES-RIMEAAALFTKHRVFACEPDVFTYNTLINGLCRT------- 225 (508)
Q Consensus 156 g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 225 (508)
+ +++++++.++++++.. +-+..+|+.-...+.+.| .++++++.++++.+.. +.|..+|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 9 6699999999999875 447888888888888888 8999999999998875 45788888887777663
Q ss_pred -------CChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHH
Q 044044 226 -------GHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDK 271 (508)
Q Consensus 226 -------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 271 (508)
+.++++++.+++....+ +-|...|+.+...+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-------P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-------PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-------SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-------CCCccHHHHHHHHHhcCCCccc
Confidence 55789999999998865 5678899988888888777554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.9e-06 Score=81.58 Aligned_cols=87 Identities=14% Similarity=0.019 Sum_probs=40.5
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044044 333 LCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEA 412 (508)
Q Consensus 333 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 412 (508)
+.+.|++++|.+.++++++.. +.+...+..+..+|.+.|++++|.+.++++.+.. +.+...|..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 344445555555555444432 1134444444444445555555555554444442 23344444444444444555555
Q ss_pred HHHHHHHHH
Q 044044 413 LSLYSEMLS 421 (508)
Q Consensus 413 ~~~~~~~~~ 421 (508)
++.|+++.+
T Consensus 94 ~~~~~~al~ 102 (477)
T 1wao_1 94 LRDYETVVK 102 (477)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.8e-05 Score=58.80 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=44.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHH
Q 044044 365 IDGYCLTDKIDHARKLFVSMESNGCMHDV---VSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPT---VVTYNTLFLGL 438 (508)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~ 438 (508)
...+...|++++|...|+++.+.. +.+. ..+..+..++...|++++|+..|+++.+.... + ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence 344445555555555555554432 1122 34444555555555555555555555543211 1 33444555555
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 044044 439 FEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~ 457 (508)
...|++++|...|+++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.8e-06 Score=64.14 Aligned_cols=86 Identities=10% Similarity=-0.024 Sum_probs=49.5
Q ss_pred cCCcchHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHH
Q 044044 155 MGRVSHGFVVLGRILRSC--FTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVAL 232 (508)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 232 (508)
.|++++|+..|+++++.+ .+.+...+..+...|...|++++|+..|++..... +.+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355566666666665543 12234455666666666666666666666666553 334556666666666667777777
Q ss_pred HHHHHHHhC
Q 044044 233 NLFEEMANG 241 (508)
Q Consensus 233 ~~~~~~~~~ 241 (508)
..|++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.3e-05 Score=74.09 Aligned_cols=140 Identities=9% Similarity=-0.028 Sum_probs=85.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINW 402 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 402 (508)
...+..+...+.+.|++++|...|+++++.- +... .....+++ .+.. +.+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~~~~-------~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAEDADG-------AKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCHHHH-------GGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccChHHH-------HHHH-HHHHHHHHHHHHH
Confidence 4456667777778888888888887776520 0000 00001111 0010 2244566777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044044 403 YCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEA 482 (508)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 482 (508)
|.+.|++++|+..++++++... .+...+..+..+|...|++++|++.|+++.+.. +.+...+..+..++...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777532 256677777777777777777777777777653 22556666666666666666655
Q ss_pred HH
Q 044044 483 LE 484 (508)
Q Consensus 483 ~~ 484 (508)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.22 E-value=2.2e-05 Score=75.03 Aligned_cols=90 Identities=7% Similarity=-0.089 Sum_probs=60.9
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLG 437 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 437 (508)
...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++++.... +...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4566667777777777777777777777664 456677777777777777777777777777765322 44566667777
Q ss_pred HHhcCCHHHHHH
Q 044044 438 LFEIHQVERALK 449 (508)
Q Consensus 438 ~~~~g~~~~a~~ 449 (508)
+...++.+++.+
T Consensus 395 ~~~~~~~~~a~~ 406 (457)
T 1kt0_A 395 QKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.20 E-value=2e-05 Score=75.45 Aligned_cols=151 Identities=11% Similarity=-0.002 Sum_probs=106.4
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC--------------HHhHHHHHHHH
Q 044044 122 HYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPN--------------AVTFTSLIKGL 187 (508)
Q Consensus 122 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~ 187 (508)
++++|+..|+...+.. +.....+..+...+.+.|++++|+..|+++++...... ..+|..+..+|
T Consensus 249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554444333221 12344566677777777788888877777766422211 57888889999
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC
Q 044044 188 CAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG 267 (508)
Q Consensus 188 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 267 (508)
.+.|++++|+..+++..... +.+..+|..+..+|...|++++|+..|+++.+.. +.+...+..+..++.+.+
T Consensus 328 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-------PQNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHH
Confidence 99999999999999988875 4478889999999999999999999999999875 445678888888888888
Q ss_pred CHHHHHH-HHHHHhh
Q 044044 268 FVDKAKE-LFLKMKD 281 (508)
Q Consensus 268 ~~~~a~~-~~~~~~~ 281 (508)
+++++.+ .+..|..
T Consensus 400 ~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 400 EHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHh
Confidence 8877764 4455543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.7e-05 Score=57.77 Aligned_cols=95 Identities=13% Similarity=-0.019 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC---HHhHHHH
Q 044044 110 FNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDI---YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPN---AVTFTSL 183 (508)
Q Consensus 110 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 183 (508)
+..+...+...|++++|+..|+.+.+.. +.+. ..+..+..++.+.|++++|...++++.+... .+ ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHH
Confidence 3444555566666666666666665532 1122 3555555666666666666666666655421 12 4445556
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhc
Q 044044 184 IKGLCAESRIMEAAALFTKHRVF 206 (508)
Q Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~ 206 (508)
..++...|++++|...|+++...
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666666654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-05 Score=64.27 Aligned_cols=99 Identities=12% Similarity=0.068 Sum_probs=68.3
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESN--------G---------CMHDVVSYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
...+......+.+.|++++|...|.+..+. . .+.+...|..+..+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445666777778888888888888777654 0 02233566677777777777777777777777
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 421 SKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 421 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
+..+ .+...|..+..+|...|++++|+..|++..+.
T Consensus 91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 7532 25667777777777777777777777777764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=9.2e-05 Score=72.54 Aligned_cols=173 Identities=8% Similarity=-0.031 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCC-
Q 044044 304 WNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGK----------MDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTD- 372 (508)
Q Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 372 (508)
.++|++.++++.... +-+...|+.--.++...|+ ++++.+.++.+++...+ +..+|+.-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 355666666666653 2344455555555555555 67777777777776433 5667777666777777
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc---------
Q 044044 373 -KIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNK-DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI--------- 441 (508)
Q Consensus 373 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------- 441 (508)
+++++.+.++++.+.+ +.+..+|+....++.+.| .++++++.++++++..+. |...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 6688888888877765 557777777777777777 778888888887776544 666776666665542
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044044 442 -----HQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLE 481 (508)
Q Consensus 442 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 481 (508)
+.++++++.++++.... +-|...|..+...+.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45788888888888764 3377788877777777666443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.4e-05 Score=62.87 Aligned_cols=99 Identities=12% Similarity=0.012 Sum_probs=80.8
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHc--------CC---------CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIWR--------GV---------NPNTYTYNTLIDGYCLTDKIDHARKLFVSME 385 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (508)
...+......+.+.|++++|...|...++. .. +.+...|..+..+|.+.|++++|...+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 446777788889999999999999888765 10 1124577888888999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 386 SNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 386 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
+.+ +.+...|..+..+|...|++++|+..|++.++.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 875 667888889999999999999999999998886
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=8.6e-05 Score=57.68 Aligned_cols=88 Identities=15% Similarity=0.060 Sum_probs=39.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 044044 364 LIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK----NKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF 439 (508)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (508)
+...|...+..++|.+.|++..+.| +...+..+...|.. .+++++|+++|++..+.| +...+..|...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 3334444444444444444444432 34444444444444 444444444444444432 3333444444444
Q ss_pred h----cCCHHHHHHHHHHHHHC
Q 044044 440 E----IHQVERALKLFDEMRRN 457 (508)
Q Consensus 440 ~----~g~~~~a~~~~~~~~~~ 457 (508)
. .++.++|.++|++..+.
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHC
Confidence 4 44444444444444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.16 E-value=5.7e-05 Score=59.21 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDEMRRN-----HVAA-DTYTY----NNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
.|..+..++.+.|++++|+..+++.++. .+.| +...| .....++...|++++|+..|++.+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455555555555555555555555442 0122 23344 455555555555555555555554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=7.7e-05 Score=57.95 Aligned_cols=113 Identities=9% Similarity=-0.100 Sum_probs=97.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHH
Q 044044 372 DKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE----IHQVERA 447 (508)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a 447 (508)
+++++|.+.|++..+.+ .+... +...|...+.+++|+++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46889999999999987 33333 7778888888999999999999975 67888889999988 8999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCc
Q 044044 448 LKLFDEMRRNHVAADTYTYNNFIDGLCK----SGFVLEALELFRAIRDSKYE 495 (508)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~ 495 (508)
.++|++..+.| +...+..|...|.. .+++++|.++|++..+.|..
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 99999999875 67778888899988 89999999999999988743
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.5e-06 Score=63.60 Aligned_cols=85 Identities=9% Similarity=0.025 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 044044 371 TDKIDHARKLFVSMESNG--CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERAL 448 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 448 (508)
.|++++|+..|++..+.+ -+.+...|..+..+|...|++++|+..|+++++..+. +..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555432 1223344555555555555555555555555554322 3445555555555555555555
Q ss_pred HHHHHHHH
Q 044044 449 KLFDEMRR 456 (508)
Q Consensus 449 ~~~~~~~~ 456 (508)
..+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.14 E-value=3.1e-05 Score=71.66 Aligned_cols=140 Identities=7% Similarity=-0.063 Sum_probs=88.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 044044 288 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDG 367 (508)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (508)
...+..+...+.+.|++++|+..|++.++.- +.. ......++ ..+. .+.+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~-------~~~~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDAD-------GAKL-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHH-------HGGG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHH-------HHHH-HHHHHHHHHHHHHH
Confidence 4567788889999999999999999987630 000 00001111 1110 01134566667777
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 044044 368 YCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERA 447 (508)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 447 (508)
|.+.|++++|.+.++++++.. +.+...|..+..+|...|++++|+..|+++.+.... +...+..+..++...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777664 446677777777777777777777777777765322 455566666666666655555
Q ss_pred HH
Q 044044 448 LK 449 (508)
Q Consensus 448 ~~ 449 (508)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.10 E-value=9.4e-06 Score=74.26 Aligned_cols=148 Identities=14% Similarity=0.061 Sum_probs=86.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINW 402 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 402 (508)
...+..+...+.+.|++++|...|+++++. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 556777788888899999999999998865 333321 233444444443321 1367888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHH
Q 044044 403 YCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDG-LCKSGFVLE 481 (508)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~ 481 (508)
|.+.|++++|+..+++.++... .+...|..+..+|...|++++|+..|+++.+... .+...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988643 3677888999999999999999999998876532 244455555544 334567778
Q ss_pred HHHHHHHHHH
Q 044044 482 ALELFRAIRD 491 (508)
Q Consensus 482 A~~~~~~m~~ 491 (508)
+...|++|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 8888888874
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.09 E-value=5.2e-05 Score=59.42 Aligned_cols=96 Identities=18% Similarity=0.012 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC------C-----HhhHHHHHHHHHhcCChHHHHHHHHHHHhC-------
Q 044044 180 FTSLIKGLCAESRIMEAAALFTKHRVFACEP------D-----VFTYNTLINGLCRTGHTIVALNLFEEMANG------- 241 (508)
Q Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 241 (508)
+......+.+.|++++|+..|++........ + ...|..+..++.+.|++++|+..+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555566666666766666666553210 2 238888889999999999999999988875
Q ss_pred CCCCCccccCCHhHH----HHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 242 NGEFGVVCKPNTVTY----NTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 242 ~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
+ +.+...| .....++...|++++|+..|++..+.
T Consensus 94 ~-------pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 N-------QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp T-------STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-------CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4 2346678 88999999999999999999998653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.9e-05 Score=75.47 Aligned_cols=124 Identities=7% Similarity=-0.079 Sum_probs=68.5
Q ss_pred HHcCCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HhHHHH
Q 044044 368 YCLTDKIDHARKLFVSMESN-----G--CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK-----GI-KPT-VVTYNT 433 (508)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~~~ 433 (508)
+...|++++|+.++++..+. | .+.-..+++.|+.+|...|++++|+.++++.++. |. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566666666666555432 1 0112345666666666666766666666665532 21 122 335666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 434 LFLGLFEIHQVERALKLFDEMRR-----NHVA-AD-TYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
|...|..+|++++|+.++++..+ .|.. |+ ..+...+..++...|.+++|..+|+++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777776666553 1211 11 22344455566666777777777777664
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.6e-05 Score=72.65 Aligned_cols=147 Identities=9% Similarity=-0.011 Sum_probs=65.3
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHH
Q 044044 144 THSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLC 223 (508)
Q Consensus 144 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 223 (508)
.+..+...+.+.|++++|...|++.+.. .|+... +...++.+++...+. ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3445555566666666666666666543 122211 111222222222111 125666777777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH-HHhcC
Q 044044 224 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRG-FCYAN 302 (508)
Q Consensus 224 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g 302 (508)
+.|++++|+..+++....+ +.+...|..+..+|...|++++|...|+++.+... .+...+..+... ....+
T Consensus 242 ~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKA 313 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHH
Confidence 7777777777777777653 34566777777777777777777777777765421 133344444433 22345
Q ss_pred CHHHHHHHHHHHHHc
Q 044044 303 DWNEAKRLFIEMMDQ 317 (508)
Q Consensus 303 ~~~~a~~~~~~~~~~ 317 (508)
..+.+...|..|...
T Consensus 314 ~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 314 LYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHhhCC
Confidence 566667777766554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.4e-05 Score=74.69 Aligned_cols=131 Identities=10% Similarity=-0.078 Sum_probs=87.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC-CCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC-----CC--CCChhhHH
Q 044044 221 GLCRTGHTIVALNLFEEMANGNG-EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE-----NI--NPDVVTYT 292 (508)
Q Consensus 221 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~~~~ 292 (508)
.+..+|++++|+.++++..+... .+|...+....+++.|+.+|...|++++|..++++.... |. +....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45678999999999988876432 222222223568899999999999999999999887542 21 11245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044044 293 SVIRGFCYANDWNEAKRLFIEMMDQ-----GV-QPD-VVTFSVIMDELCKNGKMDKASRLLELMIW 351 (508)
Q Consensus 293 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 351 (508)
.|...|...|++++|+.++++.++. |. .|+ ..+...+..++...+.+++|..++..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888776542 21 111 22344455566666667777777766654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.4e-05 Score=58.68 Aligned_cols=80 Identities=11% Similarity=-0.038 Sum_probs=66.5
Q ss_pred HHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHH
Q 044044 89 EALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRI 168 (508)
Q Consensus 89 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 168 (508)
.|+..|+++++..|. +...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...+++.
T Consensus 3 ~a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGTD--NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 578888888888876 77888889999999999999999999988764 446777888888888889999998888887
Q ss_pred HhC
Q 044044 169 LRS 171 (508)
Q Consensus 169 ~~~ 171 (508)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.4e-05 Score=59.36 Aligned_cols=93 Identities=10% Similarity=-0.022 Sum_probs=57.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC---
Q 044044 176 NAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN--- 252 (508)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--- 252 (508)
+...+..+...+...|++++|+..|++..... +.+...|..+..++...|++++|+..+++..... +.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-------STAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-------SSTTSH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCccHH
Confidence 34456666666777777777777777766653 3356667777777777777777777777777654 122
Q ss_pred ---HhHHHHHHHHHHccCCHHHHHHHH
Q 044044 253 ---TVTYNTIIDGLCKEGFVDKAKELF 276 (508)
Q Consensus 253 ---~~~~~~l~~~~~~~g~~~~a~~~~ 276 (508)
...+..+..++...|+++.|.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 334444555555555555444433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=3.6e-05 Score=60.19 Aligned_cols=84 Identities=6% Similarity=0.015 Sum_probs=63.3
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChh----------HHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYD----------TVLSLFKRLNSAGLFPDIYTHSILINCFCK 154 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (508)
+.+++|+..++.+++..|. +...|..+..++...++++ +|+..|++.++.. +.+...|..+..+|..
T Consensus 16 ~~feeA~~~~~~Ai~l~P~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 4688999999999999988 8899999999999887764 7888888877753 3356677777777776
Q ss_pred cC-----------CcchHHHHHHHHHhC
Q 044044 155 MG-----------RVSHGFVVLGRILRS 171 (508)
Q Consensus 155 ~g-----------~~~~a~~~~~~~~~~ 171 (508)
.| ++++|++.|+++++.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 54 566666666665554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.5e-05 Score=59.18 Aligned_cols=91 Identities=13% Similarity=0.079 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHH
Q 044044 393 VVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAAD------TYTY 466 (508)
Q Consensus 393 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~ 466 (508)
...|..+...+...|++++|+..|++.++... .+...+..+..++...|++++|++.+++..+.... + ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 34455555566666666666666666655422 24555556666666666666666666666553211 1 3334
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 044044 467 NNFIDGLCKSGFVLEALEL 485 (508)
Q Consensus 467 ~~li~~~~~~g~~~~A~~~ 485 (508)
..+..++...|++++|+..
T Consensus 82 ~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHhHhhhHhH
Confidence 4444445555544444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00017 Score=53.86 Aligned_cols=78 Identities=15% Similarity=0.084 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 377 ARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 377 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
|...|+++.+.. +.+...+..+...|...|++++|+..|++.++... .+...|..+..++...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555443 34555566666666666666666666666665432 2345555666666666666666666665554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=4e-05 Score=59.93 Aligned_cols=95 Identities=12% Similarity=0.044 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 044044 372 DKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD----------VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI 441 (508)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 441 (508)
+.+++|.+.+++..+.+ +.+...|+.+..++...++ +++|+..|++.++..+. +..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence 34555555555555543 4455555555555555443 34666666666665322 445566666666655
Q ss_pred C-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044044 442 H-----------QVERALKLFDEMRRNHVAADTYTYNNFI 470 (508)
Q Consensus 442 g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~li 470 (508)
| ++++|++.|++..+. .|+...|...+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3 677777777777663 45544444333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00037 Score=49.17 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
+..+...+...|++++|+..+++.++... .+...+..+..++...|++++|++.+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444444444444444444444443321 1333444444444444444444444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00046 Score=48.62 Aligned_cols=81 Identities=17% Similarity=0.166 Sum_probs=56.9
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLG 437 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 437 (508)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|+..+++..+... .+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 4566677777778888888888888777654 44667777778888888888888888888777532 245555555555
Q ss_pred HHh
Q 044044 438 LFE 440 (508)
Q Consensus 438 ~~~ 440 (508)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0003 Score=50.94 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 391 HDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 391 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
.+...+..+..+|...|++++|+..|+++++.... +...|..+..+|...|++++|++.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555666666666666666666666666654322 344556666666666666666666665543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00026 Score=51.29 Aligned_cols=64 Identities=20% Similarity=0.071 Sum_probs=43.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 176 NAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
+...+..+...|...|++++|+..|++..... +.+..+|..+..+|...|++++|++.|++...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666677777777777777777766654 33455667777777777777777777776654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0062 Score=54.88 Aligned_cols=147 Identities=10% Similarity=0.056 Sum_probs=100.1
Q ss_pred hHHcCCCCCCcccHHHHHHHHHh--c---CChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHh---cCCcc--hHH---
Q 044044 97 MLRMHPSPPPVSSFNILFGCLAK--N---KHYDTVLSLFKRLNSAGLFPD-IYTHSILINCFCK---MGRVS--HGF--- 162 (508)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g~~~--~a~--- 162 (508)
+.+..|. +..+|...+++... . .+..+|+.+|++.++. .|+ ...|..+.-++.. .+... ...
T Consensus 186 ~~~~~p~--~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~ 261 (372)
T 3ly7_A 186 LQKILPH--RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALN 261 (372)
T ss_dssp HHHHSCS--SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HhccCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHH
Confidence 3344454 88899988876543 2 3357899999999986 454 4445444433321 11111 111
Q ss_pred HHHHHHHh-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044044 163 VVLGRILR-SCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG 241 (508)
Q Consensus 163 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 241 (508)
..++.... ...+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++....
T Consensus 262 ~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 262 TEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 12222111 1225677888888877777899999999999999985 78888888899999999999999999999885
Q ss_pred CCCCCccccCCHhHHH
Q 044044 242 NGEFGVVCKPNTVTYN 257 (508)
Q Consensus 242 ~~~~~~~~~~~~~~~~ 257 (508)
.|...+|.
T Consensus 340 --------~P~~~t~~ 347 (372)
T 3ly7_A 340 --------RPGANTLY 347 (372)
T ss_dssp --------SCSHHHHH
T ss_pred --------CCCcChHH
Confidence 46666654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0011 Score=62.16 Aligned_cols=85 Identities=9% Similarity=-0.041 Sum_probs=44.1
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHH
Q 044044 406 NKDVEEALSLYSEMLSK---GIKPT----VVTYNTLFLGLFEIHQVERALKLFDEMRRN-----H-VAAD-TYTYNNFID 471 (508)
Q Consensus 406 ~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~li~ 471 (508)
.|++++|+.++++.++. -+.|+ ..+++.|+.+|..+|++++|+.++++..+. | -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35556666665555432 11111 234555666666666666666666555421 1 1111 234556666
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 044044 472 GLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 472 ~~~~~g~~~~A~~~~~~m~ 490 (508)
.|...|++++|..++++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666666654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0022 Score=60.25 Aligned_cols=99 Identities=13% Similarity=0.033 Sum_probs=72.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC-CCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC-----CC-CC-Chh
Q 044044 218 LINGLCRTGHTIVALNLFEEMANGNGE-FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE-----NI-NP-DVV 289 (508)
Q Consensus 218 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~-~~~ 289 (508)
.+..+.+.|++++|+.++++..+.... +|...+....+++.++.+|...|++++|+.+++++... |. .| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355567889999999999999876432 22222233568889999999999999999999887542 21 11 245
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 290 TYTSVIRGFCYANDWNEAKRLFIEMMD 316 (508)
Q Consensus 290 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 316 (508)
+++.|...|...|++++|+.++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 677888888888888888888887654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0011 Score=62.32 Aligned_cols=93 Identities=6% Similarity=-0.115 Sum_probs=65.7
Q ss_pred hcCChHHHHHHHHHHHhCCC-CCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC-----CC-CC-ChhhHHHHH
Q 044044 224 RTGHTIVALNLFEEMANGNG-EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE-----NI-NP-DVVTYTSVI 295 (508)
Q Consensus 224 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~ 295 (508)
..|++++|+.++++..+... .+|...+....+++.+..+|...|++++|+.++++.... |. .| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45788999999988776432 222222223467888999999999999999998887542 21 11 245677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 044044 296 RGFCYANDWNEAKRLFIEMMD 316 (508)
Q Consensus 296 ~~~~~~g~~~~a~~~~~~~~~ 316 (508)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888877654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0058 Score=55.05 Aligned_cols=126 Identities=10% Similarity=-0.049 Sum_probs=90.5
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHh---cC-Ch-hHH---HHHHHHHHhC-CCCCCHHhHHHHHHHHHhc
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAK---NK-HY-DTV---LSLFKRLNSA-GLFPDIYTHSILINCFCKM 155 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g-~~-~~A---~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 155 (508)
.+..+|+.+|+++++..|. ...+|..+..++.. .+ .. ... ...++..... ..+.+...|..+...+...
T Consensus 213 ~~~~~A~~l~e~Al~lDP~--~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPE--FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhC
Confidence 3468999999999999988 66666655555532 11 11 111 1122221111 1256788888887777778
Q ss_pred CCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHH
Q 044044 156 GRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYN 216 (508)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 216 (508)
|++++|...+++++..+ |+...|..+...+.-.|+.++|.+.|++.... .|...+|.
T Consensus 291 gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 99999999999999885 67778888888999999999999999998887 45655554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.11 Score=44.87 Aligned_cols=85 Identities=15% Similarity=0.094 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhhcCCCCC---HhhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHH
Q 044044 193 IMEAAALFTKHRVFACEPD---VFTYNTLINGLCRT-----GHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLC 264 (508)
Q Consensus 193 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (508)
...|...+++..+. .|+ -..|..+...|... |+.++|.+.|++..+.. ..-+..++......++
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln------P~~~id~~v~YA~~l~ 250 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC------SAHDPDHHITYADALC 250 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC------CTTCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC------CCCCchHHHHHHHHHH
Confidence 45677777777766 444 45777788888774 88888888888888754 1113667777777777
Q ss_pred cc-CCHHHHHHHHHHHhhCCCC
Q 044044 265 KE-GFVDKAKELFLKMKDENIN 285 (508)
Q Consensus 265 ~~-g~~~~a~~~~~~~~~~~~~ 285 (508)
.. |+.+++.+.+++.......
T Consensus 251 ~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 251 IPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTTTCHHHHHHHHHHHHHCCGG
T ss_pred HhcCCHHHHHHHHHHHHcCCCC
Confidence 74 8888888888888776544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.004 Score=58.49 Aligned_cols=62 Identities=13% Similarity=-0.032 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEMLSK-----G-IKPT-VVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
+++.++.+|...|++++|+.+++++++. | ..|+ ..+++.|...|..+|++++|+.++++..+
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444444444445555555444444321 1 1111 22344444444444444444444444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0021 Score=46.06 Aligned_cols=57 Identities=18% Similarity=0.142 Sum_probs=31.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 400 INWYCKNKDVEEALSLYSEMLSKGIKPTVV-TYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
+..+...|++++|+..++++++.... +.. .+..+..++...|++++|++.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34445556666666666655554221 334 5555555666666666666666665554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.036 Score=57.15 Aligned_cols=156 Identities=16% Similarity=0.146 Sum_probs=106.7
Q ss_pred HHHHccCCHHHHHH-HHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCh
Q 044044 261 DGLCKEGFVDKAKE-LFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKM 339 (508)
Q Consensus 261 ~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 339 (508)
......+++++|.+ ++..+. +......++..+.+.|.+++|.++.+. .. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCH
Confidence 44456788888877 552221 122347777888889999998876632 11 113445778999
Q ss_pred hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 340 DKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEM 419 (508)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (508)
++|.++.+.+ .+...|..+...+.+.|+++.|++.|.++.. |..+...+...|+.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 9999886433 3678999999999999999999999998753 445556666678877777776666
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 420 LSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 420 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
...|. ++....+|.+.|++++|++++.++.
T Consensus 734 ~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 734 ETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 66542 2344455666788888888776554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0026 Score=45.62 Aligned_cols=58 Identities=21% Similarity=0.132 Sum_probs=37.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 184 IKGLCAESRIMEAAALFTKHRVFACEPDVF-TYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
...+.+.|++++|+..|++..... +.+.. .+..+..++...|++++|++.|++....+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344556677777777777666553 23445 66666777777777777777777766654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.02 Score=59.03 Aligned_cols=155 Identities=12% Similarity=0.100 Sum_probs=96.3
Q ss_pred HHHHhcCCHHHHHH-HHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCH
Q 044044 296 RGFCYANDWNEAKR-LFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKI 374 (508)
Q Consensus 296 ~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 374 (508)
......+++++|.+ ++..+ ++......++..+.+.|..++|.++.+. .. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCH
Confidence 34456789999877 55221 1122336777888899999998876632 11 112345678999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 375 DHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEM 454 (508)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (508)
++|.++.+.+ .+...|..+...+.+.|+++.|++.|.++.+ |..+...+...|+.+...++-+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 9999986543 4778999999999999999999999998743 233444444455555555554444
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 455 RRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 455 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
...|. ++....+|.+.|++++|++++.++
T Consensus 734 ~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 734 ETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44321 222333344444555544444433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.079 Score=39.38 Aligned_cols=139 Identities=11% Similarity=0.024 Sum_probs=72.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044044 335 KNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALS 414 (508)
Q Consensus 335 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 414 (508)
-.|..+++.++..+..... +..-||.+|--....-+-+-..++++.+-+. .|. ...|++.....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 3566666666666655442 4444555554444344444444444433221 111 12334444444
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044044 415 LYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKY 494 (508)
Q Consensus 415 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 494 (508)
.+-.+- -+...++..+..+..+|+-++-.+++..+.. +.+|++...-.+..+|.+-|+..+|.+++++..++|+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 332221 1334445556666666777776666666543 2455666666677777777777777777777766665
Q ss_pred c
Q 044044 495 E 495 (508)
Q Consensus 495 ~ 495 (508)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.02 Score=44.22 Aligned_cols=82 Identities=21% Similarity=0.256 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHhcCCHHHHH
Q 044044 374 IDHARKLFVSMESNGCMHDVVSYNTLINWYCKNK---DVEEALSLYSEMLSKGIKP--TVVTYNTLFLGLFEIHQVERAL 448 (508)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~ 448 (508)
...+++.|.+..+.+ .++..+...+..++++.+ +.++++.++++..+.. .| +...+..|.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344555555554544 356666666666666666 4556666666666643 12 2444555566666666666666
Q ss_pred HHHHHHHHC
Q 044044 449 KLFDEMRRN 457 (508)
Q Consensus 449 ~~~~~~~~~ 457 (508)
++++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666663
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.098 Score=41.48 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=95.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 044044 330 MDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDV 409 (508)
Q Consensus 330 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (508)
.......|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+... +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 45567889999999997765 3788999999999999999999999987642 34555667778888
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 410 EEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 410 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
++-.++-+.....|- ++.....+...|+++++.++|.+..+ .| -.+-.....|..+.|.++.+++
T Consensus 77 e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r---~~------eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS---LP------LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC---HH------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC---hH------HHHHHHHHcCcHHHHHHHHHHh
Confidence 887777776666541 45556677789999999999865432 22 1222233467788888887776
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.011 Score=45.74 Aligned_cols=88 Identities=13% Similarity=0.050 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 044044 408 DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIH---QVERALKLFDEMRRNHVAA--DTYTYNNFIDGLCKSGFVLEA 482 (508)
Q Consensus 408 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A 482 (508)
....+.+-|.+..+.+. ++..+...+..++++.+ ++++++.++++..+.+ .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 35567777777777655 68888899999999988 6779999999999864 23 344555677788999999999
Q ss_pred HHHHHHHHHcCCccCHH
Q 044044 483 LELFRAIRDSKYELNIV 499 (508)
Q Consensus 483 ~~~~~~m~~~g~~p~~~ 499 (508)
.+.++.+++ ++|+..
T Consensus 91 ~~y~~~lL~--ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNN 105 (152)
T ss_dssp HHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHh--cCCCCH
Confidence 999999996 467543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.018 Score=40.62 Aligned_cols=47 Identities=13% Similarity=0.051 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 375 DHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
++|..++++..+.+ +.++.....+...+.+.|++++|+..|+++.+.
T Consensus 26 ~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 26 DEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44444444444443 334444444444444444444444444444443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.2 Score=39.75 Aligned_cols=131 Identities=13% Similarity=0.135 Sum_probs=89.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCH
Q 044044 295 IRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKI 374 (508)
Q Consensus 295 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 374 (508)
.....+.|+++.|.++.+++ .+...|..+.......|+++-|.+.|.... | +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D---~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH------S---FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------C---HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------C---HHHHHHHHHHhCCH
Confidence 34456789999999987765 367889999999999999999999988764 2 34445556667888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 375 DHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEM 454 (508)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (508)
++-.++-+.....| -++.....+...|++++++++|.+. |..|... ......|-.+.|.++.+++
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 87777766666554 1445556677789999999998553 2222211 1122356677788877665
Q ss_pred H
Q 044044 455 R 455 (508)
Q Consensus 455 ~ 455 (508)
-
T Consensus 142 ~ 142 (177)
T 3mkq_B 142 E 142 (177)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.05 Score=38.29 Aligned_cols=68 Identities=10% Similarity=0.035 Sum_probs=43.8
Q ss_pred CCCHHhHHHHHHHHHhcCC---HHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 174 TPNAVTFTSLIKGLCAESR---IMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 174 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
+.++..+..+..++...++ .++|..++++..... +.++.+...+...+.+.|++++|+..|+.+...+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3455566666655543333 567777777776664 3356666677777777777777777777777754
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.00062 Score=62.70 Aligned_cols=137 Identities=12% Similarity=0.108 Sum_probs=80.9
Q ss_pred CCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcc
Q 044044 80 GDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVS 159 (508)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 159 (508)
+.++.+...+|++.|-++ .|+..|..++....+.|++++-+..+...++.. .+...=+.|+-+|++.+++.
T Consensus 63 AqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~ 133 (624)
T 3lvg_A 63 AQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLA 133 (624)
T ss_dssp HTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSS
T ss_pred HHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHH
Confidence 334445566666555322 366678888888888899998888887776653 34444567888888888876
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcC--------------------CCCCHhhHHHHH
Q 044044 160 HGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFA--------------------CEPDVFTYNTLI 219 (508)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------------~~~~~~~~~~l~ 219 (508)
+-.+.+. .||..-...+.+-|...|.++.|.-+|..+.... -..++.||..+-
T Consensus 134 elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~ 206 (624)
T 3lvg_A 134 ELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 206 (624)
T ss_dssp TTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHT
T ss_pred HHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 5433321 2444444555555555566555555554332110 012456676666
Q ss_pred HHHHhcCChHHHH
Q 044044 220 NGLCRTGHTIVAL 232 (508)
Q Consensus 220 ~~~~~~g~~~~A~ 232 (508)
.+|...+++.-|.
T Consensus 207 ~ACvd~~EfrLAq 219 (624)
T 3lvg_A 207 FACVDGKEFRLAQ 219 (624)
T ss_dssp HHHHHSCTTTTTT
T ss_pred HHHhCchHHHHHH
Confidence 6666555554443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.038 Score=47.69 Aligned_cols=107 Identities=10% Similarity=-0.068 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-CCH
Q 044044 374 IDHARKLFVSMESNGCMHD---VVSYNTLINWYCKN-----KDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI-HQV 444 (508)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~ 444 (508)
...|..++++..+.+ |+ ...|..++..|... |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 578888888888874 55 56789999999884 99999999999999964432467777888888884 999
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 445 ERALKLFDEMRRNHVA--ADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 445 ~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
+++.+.+++....... |+....+. +.-++|..++.++.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHhH
Confidence 9999999999987655 55444433 23356666666554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.14 E-value=4.1e-06 Score=76.65 Aligned_cols=265 Identities=13% Similarity=0.107 Sum_probs=161.0
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 185 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (508)
.+..|..|..+....++..+|++-|=+. -|+..|..++.+..+.|.+++-+..+....+.. -++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 6678999999999999998888765332 255668889999999999999999887766552 34455568899
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHc
Q 044044 186 GLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCK 265 (508)
Q Consensus 186 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (508)
+|++.++..+-.+++. .||..-...+.+-|...|.++.|.-+|..+.. |..|...+.+
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------------~akLAstLV~ 182 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------------FGRLASTLVH 182 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------------CTTTSSSSSS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------------HHHHHHHHHH
Confidence 9999998766554443 56777778888999999999888877766543 2334444555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 044044 266 EGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRL 345 (508)
Q Consensus 266 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 345 (508)
.|++..|.+.-++. .++.||..+-.+|...+.+.-|.-.--.++-. +| -...++..|-..|.+++.+.+
T Consensus 183 L~~yq~AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsL 251 (624)
T 3lvg_A 183 LGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITM 251 (624)
T ss_dssp CSGGGSSTTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTT
T ss_pred HHHHHHHHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHH
Confidence 66665554332221 14556666666666666665554443333321 11 122344456666666666666
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 044044 346 LELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESN-GCMH------DVVSYNTLINWYCKNKDVEEAL 413 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~g~~~~A~ 413 (508)
++..... -.....+|+.|.-.|++- ++++-++.++....+ +++. ....|..++-.|.+-.+++.|.
T Consensus 252 lEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 252 LEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 6665522 123455566665555553 333333333322111 1111 2223556666666666666554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.058 Score=38.91 Aligned_cols=67 Identities=12% Similarity=0.038 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 391 HDVVSYNTLINWYCKNKDVEEALSLYSEMLSKG------IKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 391 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
.+..-+-.++..+.+.|+++.|...|+.+.+.. ..+....+..|..++.+.|+++.|+..++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 355566678888888999999999988877641 1234667888888888999999999988888875
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.088 Score=37.92 Aligned_cols=66 Identities=14% Similarity=0.028 Sum_probs=46.9
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 357 NTYTYNTLIDGYCLTDKIDHARKLFVSMESNG------CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
+..-+..+...+.+.|+++.|...|+.+.+.. -......+..+..++.+.|++++|+..++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556677777778888888888887765531 1234566777788888888888888888887764
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.078 Score=40.37 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=52.5
Q ss_pred CHHhHHHHHHHHHhcCCh------hHHHHHHHHHHHcCCCCCHH-hHHHHHH------HHHcCCCHHHHHHHHHHHHhCC
Q 044044 322 DVVTFSVIMDELCKNGKM------DKASRLLELMIWRGVNPNTY-TYNTLID------GYCLTDKIDHARKLFVSMESNG 388 (508)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~~~ 388 (508)
|..+|-..+...-+.|++ ++.+++|+++... ++|+.. .|...+. .+...++.++|.++|+.+++.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~- 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN- 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence 444454445555545555 5555666655543 333311 1111110 112235666666666666544
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 044044 389 CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKP 426 (508)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 426 (508)
.+.-...|......-.+.|++.+|.+++.+.+..+.+|
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 22235555555555566667777777776666665543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.049 Score=40.37 Aligned_cols=66 Identities=12% Similarity=0.019 Sum_probs=28.5
Q ss_pred CCHhHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 426 PTVVTYNTLFLGLFEIHQVER---ALKLFDEMRRNHVA-ADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 426 p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
++..+-..+.+++.+..+... ++.+++.+.+.+.+ -.....-.|.-++.+.|++++|.+.++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444555554444333 44445444443210 0112222333344555555555555555553
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.11 Score=39.48 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044044 442 HQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSK 493 (508)
Q Consensus 442 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 493 (508)
+++++|.++|+.+.+.+-.. ...|.....--.++|+.+.|.+++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 45555555555554432222 4444444444455555555555555555443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.93 E-value=0.13 Score=38.15 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHhHHHHHHHHHHhcCCHHHHH
Q 044044 374 IDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEE---ALSLYSEMLSKGIKP--TVVTYNTLFLGLFEIHQVERAL 448 (508)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~ 448 (508)
+..+.+.|......| .++..+--.+..++++..+... ++.+++++...+ .| .......|.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 344444444444433 2555555555556666555444 666666665543 12 2334445556666666666666
Q ss_pred HHHHHHHHC
Q 044044 449 KLFDEMRRN 457 (508)
Q Consensus 449 ~~~~~~~~~ 457 (508)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666653
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=94.78 E-value=2 Score=37.82 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=47.2
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHhHH
Q 044044 251 PNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYA---NDWNEAKRLFIEMMDQGVQPDVVTFS 327 (508)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~ 327 (508)
-++.....+...|.+.|++.+|...|-.-. .-+...+..++.-+... |...++-- ..-.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHH
Confidence 467788888999999999998888774211 11344555555444443 43333211 1111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 044044 328 VIMDELCKNGKMDKASRLLELMI 350 (508)
Q Consensus 328 ~l~~~~~~~~~~~~a~~~~~~~~ 350 (508)
. +--|.-.++...|..+++...
T Consensus 194 a-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 L-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp H-HHHHHHTTBHHHHHHHHHHHH
T ss_pred H-HHHHHHhcCHHHHHHHHHHHH
Confidence 2 223456678888888777654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.52 E-value=3.2 Score=39.00 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--Hh
Q 044044 361 YNTLIDGYCLTDKIDHARKLFVSMESN--GCMHD---VVSYNTLINWYCKNKDVEEALSLYSEMLS----KGIKPT--VV 429 (508)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~ 429 (508)
...|...|...|++.+|.+++..+... +.... ...+...++.|...+++.+|..++.++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 344556666666676666666665432 11111 23344555666666666666666665532 111111 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
.+...+..+...+++.+|.+.|.++.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34455555566666666666665554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.34 E-value=1.2 Score=33.29 Aligned_cols=65 Identities=12% Similarity=0.126 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 044044 289 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGV 354 (508)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 354 (508)
......+......|+-++..+++..+... .+|++.....+..+|.+.|+..++.+++.++.+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33444444555555555555555553221 244444555555555555555555555555555543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.28 E-value=5.6 Score=40.85 Aligned_cols=260 Identities=13% Similarity=0.087 Sum_probs=135.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-------CCChhhHHH
Q 044044 221 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENI-------NPDVVTYTS 293 (508)
Q Consensus 221 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~ 293 (508)
+....|+.++++.+++........ ..+....-..+.-+....|..+++..++.......- .+....-..
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s----~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAa 458 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRA----SSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGAS 458 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCC----SCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCC----CcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHH
Confidence 455677888887777765542100 122233334444555566665677777766554311 011111122
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHH--hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 044044 294 VIRGFCYAND-WNEAKRLFIEMMDQGVQPDVV--TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL 370 (508)
Q Consensus 294 l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (508)
+.-+..-.|. -+++.+.+..+....- .... .-..+...+.-.|+.+....++..+.+.. ..+..-...+.-++..
T Consensus 459 LGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 459 LGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhh
Confidence 2222222232 2455555655554321 1111 11123334556677777777777766542 1122222333344556
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 044044 371 TDKIDHARKLFVSMESNGCMHDVVSYN---TLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERA 447 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 447 (508)
.|+.+.+..+.+.+.... .| ..-|. ++.-+|+..|+.....+++..+.+. ...+..-...+.-++...|+.+.+
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred CCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHH
Confidence 788888888888877642 12 22232 3345677888877777788888765 222333334444455556776667
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 044044 448 LKLFDEMRRNHVAADTYTYNNFIDGLCKSGFV-LEALELFRAIR 490 (508)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 490 (508)
.++++.+.+.+ .|....-..+.-+....|.. .+++.++..+.
T Consensus 614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 77776665542 33333333344444445543 56777777776
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=4.8 Score=39.50 Aligned_cols=150 Identities=7% Similarity=-0.106 Sum_probs=72.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHh----HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044044 338 KMDKASRLLELMIWRGVNPNTYT----YNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEAL 413 (508)
Q Consensus 338 ~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 413 (508)
+.+.|...+....+... .+... +..+.......+...++...+...... ..+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 55666666666544321 12221 222222223334233444444443332 233333333333344556777777
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH------------CCCCC-------C-----HH---HH
Q 044044 414 SLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR------------NHVAA-------D-----TY---TY 466 (508)
Q Consensus 414 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------~~~~~-------~-----~~---~~ 466 (508)
..|+.|..... ........+..++...|+.++|..+|+.+.+ .|.++ + .. .-
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~ 384 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPE 384 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHH
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChH
Confidence 76666554311 1233344555566666777777666665432 12111 0 00 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 467 NNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 467 ~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
...+..+...|....|...+..+.+
T Consensus 385 ~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 385 MARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCChhhHHHHHHHHHh
Confidence 1234557788999999888887765
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.12 E-value=1.4 Score=41.39 Aligned_cols=194 Identities=12% Similarity=-0.006 Sum_probs=117.0
Q ss_pred CChHHHHHHHHHhHHcCC----CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH----hcC
Q 044044 85 ITPNEALCIFDYMLRMHP----SPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFC----KMG 156 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g 156 (508)
|++++|++.+-.+.+... ..........++..|...|+++...+.+..+.+..... ...-..+++.+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 567888877765554321 11234567778888999999999988887775543222 222233343332 233
Q ss_pred CcchHH--HHHHHHHh--CC-CCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-CC----HhhHHHHHHHHH
Q 044044 157 RVSHGF--VVLGRILR--SC-FTP---NAVTFTSLIKGLCAESRIMEAAALFTKHRVFACE-PD----VFTYNTLINGLC 223 (508)
Q Consensus 157 ~~~~a~--~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~ 223 (508)
..+... .+.+.... .| +-. .......|...+...|++.+|..++..+...-.. .+ ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 322211 11111110 11 111 1233456788899999999999999997643111 12 346777889999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCccccCC--HhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 044044 224 RTGHTIVALNLFEEMANGNGEFGVVCKPN--TVTYNTIIDGLCKEGFVDKAKELFLKMKD 281 (508)
Q Consensus 224 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (508)
..+++..|..+++++....... ..+|+ ...+...+..+...++|.+|.+.|.++.+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKN--PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhccc--CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999999999875311000 02222 23566677778888999988888777654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.29 Score=45.17 Aligned_cols=58 Identities=5% Similarity=0.017 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 397 NTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
..++..+...|++++|+..+..+.... +.+...+..++.++...|+..+|++.|+.+.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555555555554432 2244455555555555555555555555443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.96 E-value=6.4 Score=40.40 Aligned_cols=153 Identities=13% Similarity=0.116 Sum_probs=64.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHH---HHHHHHHcCCCH
Q 044044 298 FCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYN---TLIDGYCLTDKI 374 (508)
Q Consensus 298 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~ 374 (508)
+...|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+.+.+... ..|. .-|. ++.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCH
Confidence 344555555555555554421 111111122222333556666666665555542 1111 1121 223445556666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH-HHHHHHHHH
Q 044044 375 DHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQV-ERALKLFDE 453 (508)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 453 (508)
....++++.+.+.. ..++...-.+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|+. .+++..+..
T Consensus 577 ~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 577 SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 55555666655431 1122222222223334455555555555444432 23333223333333333332 455555555
Q ss_pred HH
Q 044044 454 MR 455 (508)
Q Consensus 454 ~~ 455 (508)
+.
T Consensus 655 L~ 656 (963)
T 4ady_A 655 LT 656 (963)
T ss_dssp HH
T ss_pred Hc
Confidence 54
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.32 Score=48.63 Aligned_cols=50 Identities=14% Similarity=0.020 Sum_probs=23.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 439 FEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
...|+++.|+++-++.... .+.+..+|..|..+|...|+++.|+-.++.+
T Consensus 348 l~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3444555555555544443 2223445555555555555555555444444
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=93.25 E-value=4.9 Score=36.78 Aligned_cols=241 Identities=10% Similarity=0.040 Sum_probs=138.0
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhC-CCCC---ChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHhH--
Q 044044 254 VTYNTIIDGLCKEGFVDKAKELFLKMKDE-NINP---DVVTYTSVIRGFCYA-NDWNEAKRLFIEMMDQGVQPDVVTF-- 326 (508)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~-- 326 (508)
.....+...|.+.|+.++..+++...... +.-+ .......++..+... +..+.-.++..+..++.. -+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45567889999999999999998876432 1111 233455677777664 445555555555554311 111222
Q ss_pred ----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHhHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCCHHH
Q 044044 327 ----SVIMDELCKNGKMDKASRLLELMIWRGVNPN-----TYTYNTLIDGYCLTDKIDHARKLFVSMESN--GCMHDVVS 395 (508)
Q Consensus 327 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 395 (508)
..++..|...|++.+|.+++..+.+.-...| ..++..-++.|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2578889999999999999988876421112 335666678899999999999999776543 12234433
Q ss_pred HHH----HHHHHH-hcCCHHHHHHHHHHHHHC-C-C-CC---CHhHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCH
Q 044044 396 YNT----LINWYC-KNKDVEEALSLYSEMLSK-G-I-KP---TVVTYNTLFLGLFEIHQVERALKLF-DEMRRNHVAADT 463 (508)
Q Consensus 396 ~~~----l~~~~~-~~g~~~~A~~~~~~~~~~-~-~-~p---~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~ 463 (508)
-.. -+..+. ..++|.+|...|-+..+. . . .| +...|..|... -.++..+...++ .+....-..|+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL--l~~~r~el~~~l~~~~~~~~~~pei 256 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI--MLGQSDDVNQLVSGKLAITYSGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--HTTCGGGHHHHHHSHHHHTTCSHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH--HcCCHHHHHHHhccccccccCCccH
Confidence 222 233456 789999999988776532 1 1 11 12233222222 223322222222 121111134555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHH
Q 044044 464 YTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIV 499 (508)
Q Consensus 464 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 499 (508)
..+..++.+| ..|++.+...+++.... .+..|..
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 5566676665 55777777666665432 2344443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.18 E-value=1.4 Score=32.86 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 391 HDVVSYNTLINWYCKNKD---VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 391 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
|+..+--....++++..+ ..+++.+++++.+.+..-....+..|.-++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444344444444433 234455555544433111233344444455555555555555555554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.86 Score=45.63 Aligned_cols=44 Identities=11% Similarity=0.039 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHHHHHHHHc
Q 044044 461 ADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLID 506 (508)
Q Consensus 461 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 506 (508)
-+..-|..|.....|.+++++|.+.|+..+.. +-+...+..||+
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLe 654 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLK 654 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHH
Confidence 35556888888888899999999999888854 456666666664
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=92.46 E-value=5.5 Score=35.31 Aligned_cols=83 Identities=5% Similarity=0.018 Sum_probs=48.1
Q ss_pred cCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 044044 250 KPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVI 329 (508)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 329 (508)
.-|......+...|.+.+++.+|...|- . |..+++..+..++.-+...+...+ .+...-..+
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHH
Confidence 3467777888899999999999888773 1 233334566555544444332111 122222222
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 044044 330 MDELCKNGKMDKASRLLELMIW 351 (508)
Q Consensus 330 ~~~~~~~~~~~~a~~~~~~~~~ 351 (508)
+ -|...++...|..+++...+
T Consensus 195 L-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 195 L-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H-HHHHTTCHHHHHHHHHHHHH
T ss_pred H-HHHHhCCHHHHHHHHHHHHH
Confidence 2 35556788888777665553
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.20 E-value=4 Score=43.74 Aligned_cols=142 Identities=12% Similarity=0.045 Sum_probs=76.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC-----------
Q 044044 218 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINP----------- 286 (508)
Q Consensus 218 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------- 286 (508)
++..+...+.++.+.++... ++.+......++.++...|++++|.+.|++.... +..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~ 885 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREF 885 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhh-----------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhccc
Confidence 44445555666555554432 2334444456677777888888888888765321 100
Q ss_pred ------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHH
Q 044044 287 ------------DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDV----VTFSVIMDELCKNGKMDKASRLLELMI 350 (508)
Q Consensus 287 ------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~ 350 (508)
-..-|..++..+.+.+.++.+.+.-...++...+.+. ..|..+.+.+...|++++|...+-.+.
T Consensus 886 ~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 886 QEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp HHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 1123455666666666666666666555543211111 145566666667777777766666555
Q ss_pred HcCCCCCHHhHHHHHHHHHcCCC
Q 044044 351 WRGVNPNTYTYNTLIDGYCLTDK 373 (508)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~~~~g~ 373 (508)
.... -......|+...+..|.
T Consensus 966 d~~~--r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 966 TTPL--KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HSSS--CHHHHHHHHHHHHHHCC
T ss_pred CHHH--HHHHHHHHHHHHHhCCC
Confidence 4322 23445555544444433
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.07 E-value=3 Score=31.48 Aligned_cols=68 Identities=10% Similarity=0.104 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 390 MHDVVSYNTLINWYCKNKD---VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 390 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
.++..+--....++.+..+ ..+++.+++++...+..-.......|.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3455554455555555543 3345566666555432223334445555666666666666666666653
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.49 E-value=1.1 Score=31.24 Aligned_cols=62 Identities=10% Similarity=0.170 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044044 408 DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFI 470 (508)
Q Consensus 408 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 470 (508)
|.=+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+-++.+ ..+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 44456666666666666777777777777777777777777777766644 222233455444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.45 E-value=0.9 Score=41.85 Aligned_cols=68 Identities=13% Similarity=0.131 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhH
Q 044044 362 NTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS-----KGIKPTVVT 430 (508)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 430 (508)
..++..+...|+++++...+..+.... +.+...|..+|.++...|+..+|++.|+++.+ .|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345556666777777777766666553 55666777777777777777777777766543 266666654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.21 E-value=1.8 Score=33.67 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhh
Q 044044 181 TSLIKGLCAESRIMEAAALFTKHR 204 (508)
Q Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~ 204 (508)
.-+..+|.+.+++++|+.+++.+.
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCC
Confidence 335555566666666666665543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.21 E-value=4.3 Score=28.43 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHH
Q 044044 192 RIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTII 260 (508)
Q Consensus 192 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (508)
+.-+..+-++.+......|++.+..+.+.+|.+.+++..|.++|+.++.+- .....+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-------~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-------GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-------cCchhhHHHHH
Confidence 444666667777777777888888888888888888888888888877663 23344565554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.20 E-value=5.5 Score=29.66 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=27.5
Q ss_pred CCHhHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 426 PTVVTYNTLFLGLFEIHQV---ERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 426 p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
|+..+-..+.+++.+..+. .+++.+++++.+.+..-....+-.|.-++.+.|++++|.+..+.++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444444444444432 2344444444443211112233333444445555555555555444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.11 E-value=11 Score=40.44 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=49.9
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 044044 253 TVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPD----VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSV 328 (508)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 328 (508)
..-|..++..+.+.+.++.+.++-....+.....+ ...|..+...+...|++++|...+-.+..... -...+..
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 34566666677777777777666665554321111 12456666777777777777777766655433 2345555
Q ss_pred HHHHHHhcCChhH
Q 044044 329 IMDELCKNGKMDK 341 (508)
Q Consensus 329 l~~~~~~~~~~~~ 341 (508)
++..++..|..+.
T Consensus 977 LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 977 FVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHCCHHH
T ss_pred HHHHHHhCCChhh
Confidence 6655555555443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.88 E-value=4.3 Score=30.17 Aligned_cols=49 Identities=6% Similarity=0.130 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 409 VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 409 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
.=+..+-++.+....+.|++......+.+|.+.+|+..|.++|+-.+.+
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3344555555555556666666666666666666666666666655543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.28 E-value=3.4 Score=32.15 Aligned_cols=58 Identities=10% Similarity=0.122 Sum_probs=25.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhC-CCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 257 NTIIDGLCKEGFVDKAKELFLKMKDE-NINPDV-------VTYTSVIRGFCYANDWNEAKRLFIEM 314 (508)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 314 (508)
..-+..+...|.++.|+-+.+.+... +..++. .++..+.+++...|++..|...|++.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33444455555555555555443321 011221 12333444455555555555555554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=87.74 E-value=5.2 Score=27.89 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=20.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 438 LFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
+...|++++|..+.+.+ ..||.+.|-+|- -.+.|..+++...+.++..+
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHHHHhC
Confidence 34444444444443322 134444443332 22444444444444444433
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=86.52 E-value=7.5 Score=28.91 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHH
Q 044044 193 IMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTII 260 (508)
Q Consensus 193 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (508)
.-+..+-++.+....+.|++.+....+.+|.+.+|+..|..+|+-++.+- .+....|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-------~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-------GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-------CCchhhHHHHH
Confidence 34555666666666777888888888888888888888888888877663 33344565554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.99 E-value=4.9 Score=27.94 Aligned_cols=49 Identities=10% Similarity=-0.031 Sum_probs=20.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 438 LFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
+...|++++|..+.+.+ ..||.+.|-+|- -.+.|..+++...+.++..+
T Consensus 49 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHHHHhC
Confidence 34444444444443322 234444443332 23444444444444444433
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.33 E-value=4.6 Score=37.67 Aligned_cols=98 Identities=13% Similarity=-0.017 Sum_probs=57.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhH--HH
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNG--CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK---GIKPTVVT--YN 432 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~--~~ 432 (508)
+...+...|.+.|++++|.+.+.++.... ...-...+-.++..+...+++..+...+.++... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 55667777777777777777777776542 1223455666677777777777777777766432 22222221 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 433 TLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
.-+..+...+++..|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 2223344566777777666665543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.95 E-value=12 Score=28.28 Aligned_cols=68 Identities=7% Similarity=-0.060 Sum_probs=35.6
Q ss_pred CCCHHhHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 355 NPNTYTYNTLIDGYCLTDK---IDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 355 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+........-.+.-++.+.|++++|.++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3444444445555555543 3345556666555432123333344555566666666666666666664
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=83.66 E-value=35 Score=33.45 Aligned_cols=116 Identities=9% Similarity=0.004 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 044044 372 DKIDHARKLFVSMESNGCMHDVVSYN----TLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERA 447 (508)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 447 (508)
.+.+.|...+....+.. ..+..... .++......+...++...+....... .+.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 37899999998886543 23333332 22223334453556677776655543 3333344455555678999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 448 LKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.+.|+.|...... ...-.--+.+++.+.|+.++|..+|+++..
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999988764222 233233456678889999999999999874
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.40 E-value=2.3 Score=36.14 Aligned_cols=53 Identities=9% Similarity=0.054 Sum_probs=42.7
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSA 136 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 136 (508)
++.|++++|+.....-++..|. |...-..++..++-.|++++|.+-++.+.+.
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~--da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4567888888888888888877 8878888888888888888888888777664
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.63 E-value=20 Score=33.35 Aligned_cols=99 Identities=7% Similarity=-0.070 Sum_probs=67.7
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc---CCCCCHhh--HH
Q 044044 144 THSILINCFCKMGRVSHGFVVLGRILRS--CFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF---ACEPDVFT--YN 216 (508)
Q Consensus 144 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~--~~ 216 (508)
+...+...+.+.|+++.|.+.+.++... +...-...+-..++.+...+++..+...+.++... +..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667888888999999999999888753 33344567777888888889999999888886543 21222211 11
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 217 TLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 217 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
.-+..+...+++..|-..|-+.....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 11223446789999988888776543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.31 E-value=29 Score=30.79 Aligned_cols=81 Identities=14% Similarity=0.104 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044044 391 HDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFI 470 (508)
Q Consensus 391 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 470 (508)
-|+.....+...|.+.+++.+|...| + .|-.+....|..++.-+...+... ..|...-.+++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~--i--lg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL 195 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL--V--LGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVL 195 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH--T--TSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH--H--hcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHH
Confidence 36677777788888888888887776 2 133333355554444433333211 11222222233
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 044044 471 DGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 471 ~~~~~~g~~~~A~~~~~~m~ 490 (508)
-|.-.|+...|..+++...
T Consensus 196 -~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 196 -PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -HHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHhCCHHHHHHHHHHHH
Confidence 3555677777777666655
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=81.31 E-value=27 Score=30.60 Aligned_cols=25 Identities=24% Similarity=0.061 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 044044 392 DVVSYNTLINWYCKNKDVEEALSLY 416 (508)
Q Consensus 392 ~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (508)
++.....+...|.+.|++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 6667777777777777777777765
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.25 E-value=13 Score=26.02 Aligned_cols=16 Identities=25% Similarity=0.171 Sum_probs=7.6
Q ss_pred HHHhcCChHHHHHHHH
Q 044044 221 GLCRTGHTIVALNLFE 236 (508)
Q Consensus 221 ~~~~~g~~~~A~~~~~ 236 (508)
.+...|+|++|..+.+
T Consensus 49 SLmNrG~Yq~Al~l~~ 64 (116)
T 2p58_C 49 SLMNRGDYASALQQGN 64 (116)
T ss_dssp HHHHTTCHHHHHHHHT
T ss_pred HHHcchhHHHHHHhcC
Confidence 3444555555554443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 508 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.71 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.7 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.37 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.37 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.36 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.34 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.34 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.31 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.25 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.23 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.19 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.14 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.9 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.87 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.86 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.79 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.78 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.76 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.74 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.67 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.66 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.58 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.56 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.52 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.48 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.44 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.44 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.41 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.38 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.36 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.31 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.29 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.23 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.22 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.2 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.17 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.06 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.03 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.03 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.03 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.0 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.99 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.94 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.92 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.91 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.86 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.82 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.81 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.54 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.41 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.2 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.15 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.13 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.95 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.23 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.0 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.93 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.78 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.55 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.82 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.07 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.43 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=6.9e-24 Score=198.24 Aligned_cols=379 Identities=15% Similarity=0.041 Sum_probs=303.2
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchH
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHG 161 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 161 (508)
+..|++++|++.|+++++..|. +..++..++.++.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|
T Consensus 10 ~~~G~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A 86 (388)
T d1w3ba_ 10 YQAGDFEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccc
Confidence 4568999999999999999887 88899999999999999999999999998764 45677888999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044044 162 FVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG 241 (508)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 241 (508)
+..+....+.. +.+..............+....+........... .................+....+...+......
T Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhcc
Confidence 99999988764 3344455555555556666666666666555443 335555666667777888888888888887775
Q ss_pred CCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 044044 242 NGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 321 (508)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 321 (508)
. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++....+ +.
T Consensus 165 ~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 235 (388)
T d1w3ba_ 165 Q-------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN 235 (388)
T ss_dssp C-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT
T ss_pred C-------cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hh
Confidence 4 4456778888888999999999999999887753 2356778888889999999999999999888764 44
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044044 322 DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLIN 401 (508)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (508)
+...+..+...+.+.|++++|...++++++.. +.+..++..+...+...|++++|.+.++...... +.+...+..+..
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHH
Confidence 66777888888999999999999999988764 2357788888899999999999999998887764 667788888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044044 402 WYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGF 478 (508)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 478 (508)
.+...|++++|++.|++.++..+. +..++..+..++...|++++|++.|+++.+.. +-+...|..+..+|.+.||
T Consensus 314 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 314 IKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 999999999999999998876432 56778888999999999999999999988753 2257788888888887775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.1e-22 Score=188.00 Aligned_cols=374 Identities=14% Similarity=0.053 Sum_probs=312.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 044044 113 LFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR 192 (508)
Q Consensus 113 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (508)
+...+.+.|++++|++.|+++.+.. +-+...+..+..++.+.|++++|...++++++.. +.+..++..+...|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 4566788999999999999998763 4467889999999999999999999999998874 4467889999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHH
Q 044044 193 IMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKA 272 (508)
Q Consensus 193 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 272 (508)
+++|+..+....... +.+...+..........+....+........... .................+....+
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 154 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-------PDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-------TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccc-------cccccccccccccccccchhhhh
Confidence 999999999988875 4455556666666667777777777766666553 34555666677777888899999
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 044044 273 KELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWR 352 (508)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 352 (508)
...+.+..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.....
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 232 (388)
T d1w3ba_ 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHH
Confidence 99888887653 3356778888899999999999999999998863 446678888999999999999999999999887
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 044044 353 GVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYN 432 (508)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 432 (508)
+ ..+...+..+...+.+.|++++|...|+++.+.. +.+..+|..+...+...|++++|++.++...... +.+...+.
T Consensus 233 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 309 (388)
T d1w3ba_ 233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLN 309 (388)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred h-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-Cccchhhh
Confidence 5 3367788889999999999999999999998875 5678899999999999999999999999988864 44778889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccC-HHHHHHH
Q 044044 433 TLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELN-IVSYNCL 504 (508)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 504 (508)
.+...+...|++++|++.+++..+.. +.+...+..+..+|.+.|++++|.+.|++.++ +.|+ ...|..|
T Consensus 310 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l 379 (388)
T d1w3ba_ 310 NLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 379 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 99999999999999999999998863 33677889999999999999999999999985 4665 4455544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.2e-14 Score=131.31 Aligned_cols=272 Identities=13% Similarity=0.043 Sum_probs=172.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHH
Q 044044 182 SLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIID 261 (508)
Q Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 261 (508)
.....+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|+..|++..+.. +.+...|..++.
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~ 95 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-------PDNQTALMALAV 95 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-------cccccccccccc
Confidence 34555667777777777777776653 3356667777777777777777777777776653 334566667777
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhH
Q 044044 262 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDK 341 (508)
Q Consensus 262 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 341 (508)
.+...|++++|.+.++++.... |+............. ..+.......+..+...+...+
T Consensus 96 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (323)
T d1fcha_ 96 SFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLE 154 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHH
T ss_pred cccccccccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHH
Confidence 7777777777777777766542 221110000000000 0000011111223344455667
Q ss_pred HHHHHHHHHHcCC-CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 342 ASRLLELMIWRGV-NPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 342 a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
+...+..+++... ..+..++..+...+...|++++|...+++..... +.+...|..++.++...|++++|++.|++++
T Consensus 155 a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 233 (323)
T d1fcha_ 155 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRAL 233 (323)
T ss_dssp HHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHH
Confidence 7777777766432 2346677778888888888888888888877764 4567788888888888888888888888888
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044044 421 SKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN----------HVAADTYTYNNFIDGLCKSGFVLEALE 484 (508)
Q Consensus 421 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~~~~~li~~~~~~g~~~~A~~ 484 (508)
+.... +..++..++.+|...|++++|++.|++.++. ........|..+-.++...|+.+.+..
T Consensus 234 ~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 234 ELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHhhc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 75322 5667888888888888888888888887752 111223355666666666676655443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2e-15 Score=136.54 Aligned_cols=225 Identities=14% Similarity=0.075 Sum_probs=145.1
Q ss_pred CCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcc
Q 044044 80 GDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVS 159 (508)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 159 (508)
.++..|++++|+..|+++++.+|. +..+|..++.++...|++++|+..|+++.+.. +-+...|..+..++...|+++
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~ 104 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQDPK--HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQR 104 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccccc
Confidence 345668999999999999998887 88899999999999999999999999988764 446778888888999999999
Q ss_pred hHHHHHHHHHhCCCCCCHHh---------------HHHHHHHHHhcCCHHHHHHHHHHhhhcCC-CCCHhhHHHHHHHHH
Q 044044 160 HGFVVLGRILRSCFTPNAVT---------------FTSLIKGLCAESRIMEAAALFTKHRVFAC-EPDVFTYNTLINGLC 223 (508)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~---------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 223 (508)
+|.+.++++...... .... ....+..+...+.+.+|...|.+...... ..+..++..+...+.
T Consensus 105 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~ 183 (323)
T d1fcha_ 105 QACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 183 (323)
T ss_dssp HHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred ccccchhhHHHhccc-hHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 999999988765321 1100 00111122233445556666555544321 123445555566666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 044044 224 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYAND 303 (508)
Q Consensus 224 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 303 (508)
..|++++|+..|++..... +.+...|..+..++...|++++|.+.|+++.+.. +-+..+|..+..+|.+.|+
T Consensus 184 ~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~ 255 (323)
T d1fcha_ 184 LSGEYDKAVDCFTAALSVR-------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA 255 (323)
T ss_dssp HTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhhhhcccccccccc-------cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCC
Confidence 6666666666666655543 2345556666666666666666666666655532 1234455556666666666
Q ss_pred HHHHHHHHHHHHH
Q 044044 304 WNEAKRLFIEMMD 316 (508)
Q Consensus 304 ~~~a~~~~~~~~~ 316 (508)
+++|+..|++.++
T Consensus 256 ~~~A~~~~~~al~ 268 (323)
T d1fcha_ 256 HREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2.2e-10 Score=101.87 Aligned_cols=198 Identities=6% Similarity=-0.010 Sum_probs=117.7
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-cchHHHHHHHHHhCCCCCCHHhHHHHHH
Q 044044 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGR-VSHGFVVLGRILRSCFTPNAVTFTSLIK 185 (508)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (508)
..+++.+...+.+.+.+++|+++++++++.. +-+...|+....++...|+ +++|+..++++++.. +-+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 4566677777777777777777777777753 3455566766666666553 677777777766653 335666666666
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHc
Q 044044 186 GLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCK 265 (508)
Q Consensus 186 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (508)
.+.+.|++++|+..++++.... +.+..+|..+...+.+.|++++|++.++++.+.+ +.+...|+.+..++.+
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-------p~n~~a~~~r~~~l~~ 192 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-------VRNNSVWNQRYFVISN 192 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-------CccHHHHHHHHHHHHH
Confidence 6777777777777777766654 3356666667777777777777777777766654 3455566655555544
Q ss_pred cCC------HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 266 EGF------VDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMD 316 (508)
Q Consensus 266 ~g~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 316 (508)
.+. +++|++.+.++.+.. +.+...|+.+...+.. ...+++.+.++...+
T Consensus 193 ~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 193 TTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLD 247 (315)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred ccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence 443 345555555554432 1234444444333322 223444444444433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.8e-10 Score=102.35 Aligned_cols=214 Identities=11% Similarity=0.031 Sum_probs=140.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC-CHHHHHHHHHHHhhCCCCCChhhH
Q 044044 213 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG-FVDKAKELFLKMKDENINPDVVTY 291 (508)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~ 291 (508)
.+++.+...+.+.+.+++|+++++++.+.+ |-+...|+....++...| ++++|+..+++..+.. +-+..+|
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-------P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~ 115 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVW 115 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHH
Confidence 355566666777777777888777777764 445667777777776655 4777777777776653 2356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcC
Q 044044 292 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLT 371 (508)
Q Consensus 292 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (508)
..+...+.+.|++++|++.++++.+.. +.+...|..+...+...|++++|...++.+++.+.. +...|+.+...+.+.
T Consensus 116 ~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~ 193 (315)
T d2h6fa1 116 HHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNT 193 (315)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHc
Confidence 777777777777888888777777753 445667777777777778888888888777776432 566666665555544
Q ss_pred CC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHH
Q 044044 372 DK------IDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKP-TVVTYNTLFLGL 438 (508)
Q Consensus 372 g~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 438 (508)
+. +++|.+.+.++.+.. +.+...|+.+...+.. ...+++.+.++...+....+ +...+..++..|
T Consensus 194 ~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 194 TGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred cccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 43 567777777777664 4567777766655443 33566667776666542222 334444455544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=1.1e-09 Score=99.25 Aligned_cols=301 Identities=10% Similarity=-0.034 Sum_probs=188.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHH
Q 044044 183 LIKGLCAESRIMEAAALFTKHRVFACEPD----VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNT 258 (508)
Q Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (508)
....+...|++++|++++++........+ ..++..+..++...|++++|+..|++........+. .......+..
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~ 96 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV-WHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHH
Confidence 34555667777777777777665421111 235566677777788888888887776653210000 1112334556
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhC----CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHhHH
Q 044044 259 IIDGLCKEGFVDKAKELFLKMKDE----NINPD---VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV----QPDVVTFS 327 (508)
Q Consensus 259 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~ 327 (508)
+...+...|++..+...+.+.... +.... ...+..+...+...|+++.+...+........ ......+.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 667777888888888877765431 11111 22445566677788888888888887765421 22234555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC--CCCC----HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC---CHHHHHH
Q 044044 328 VIMDELCKNGKMDKASRLLELMIWRG--VNPN----TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMH---DVVSYNT 398 (508)
Q Consensus 328 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~ 398 (508)
.....+...++...+...+....... .... ...+..+...+...|++++|...+++..+..... ....+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 56667777888888888776655421 1111 2345556667788899999998888776543222 2445666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC----CCHHH
Q 044044 399 LINWYCKNKDVEEALSLYSEMLSK----GIKPT-VVTYNTLFLGLFEIHQVERALKLFDEMRRN----HVA----ADTYT 465 (508)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~----~~~~~ 465 (508)
+..++...|++++|...++++... +..|+ ..++..+..+|...|++++|.+.+++..+. |.. .....
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~ 336 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 336 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHH
Confidence 788888999999999998887642 33333 346777888899999999999998877642 221 11233
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q 044044 466 YNNFIDGLCKSGFVLEALE 484 (508)
Q Consensus 466 ~~~li~~~~~~g~~~~A~~ 484 (508)
+..++..+...|+.+++.+
T Consensus 337 ~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 337 MAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhcCCChHHHH
Confidence 4455566666777666654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.34 E-value=2.8e-10 Score=101.12 Aligned_cols=219 Identities=12% Similarity=0.052 Sum_probs=104.6
Q ss_pred hHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcC--------------ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 044044 87 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNK--------------HYDTVLSLFKRLNSAGLFPDIYTHSILINCF 152 (508)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (508)
.+.+..+|++++...|. +...|..-+..+...+ ..++|..+|++..+...+.+...|...+...
T Consensus 32 ~~Rv~~vyerAl~~~~~--~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~ 109 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45577788888887776 6667766555443222 2344555555555432233344445555555
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHH-HHhcCChHHH
Q 044044 153 CKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLING-LCRTGHTIVA 231 (508)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A 231 (508)
...|+.+.|..+++++++........+|..++..+.+.|++++|.++|+++...+ +.+...|...... +...|+.+.|
T Consensus 110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a 188 (308)
T d2onda1 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHH
Confidence 5555555555555555543222223344555555555555555555555554432 1122222222222 2223455555
Q ss_pred HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC-CCCC--hhhHHHHHHHHHhcCCHHHHH
Q 044044 232 LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDEN-INPD--VVTYTSVIRGFCYANDWNEAK 308 (508)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~ 308 (508)
..+|+.+.... +.+...|...+....+.|+++.|..+|++..+.. ..|. ...|...+..-...|+.+.+.
T Consensus 189 ~~i~e~~l~~~-------p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~ 261 (308)
T d2onda1 189 FKIFELGLKKY-------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp HHHHHHHHHHH-------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHhh-------hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555431 3334445555555555555555555555544431 1111 123444444434445555555
Q ss_pred HHHHHHH
Q 044044 309 RLFIEMM 315 (508)
Q Consensus 309 ~~~~~~~ 315 (508)
.+++++.
T Consensus 262 ~~~~r~~ 268 (308)
T d2onda1 262 KVEKRRF 268 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=1.2e-10 Score=105.87 Aligned_cols=271 Identities=13% Similarity=0.058 Sum_probs=189.6
Q ss_pred CCCCCChHHHHHHHHHhHHcCCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHhHHHHHHHH
Q 044044 81 DINLITPNEALCIFDYMLRMHPSPPP---VSSFNILFGCLAKNKHYDTVLSLFKRLNSAGL-FPD----IYTHSILINCF 152 (508)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~ 152 (508)
.+..|++++|+.+++++++..|..+. ..++..+..++...|++++|+..|++..+... .++ ...+..+...+
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 101 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 34678999999999999998876221 24677788899999999999999998865310 111 33456667788
Q ss_pred HhcCCcchHHHHHHHHHh----CCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC----CCHhhHHHHHHH
Q 044044 153 CKMGRVSHGFVVLGRILR----SCFTP---NAVTFTSLIKGLCAESRIMEAAALFTKHRVFACE----PDVFTYNTLING 221 (508)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~----~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~ 221 (508)
...|++..+...+..... .+... ....+..+...+...|+++.+...+......... .....+......
T Consensus 102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
T d1hz4a_ 102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 899999999999887754 21111 1235566778889999999999999887765322 223456667777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHH
Q 044044 222 LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPD---VVTYTSVIRGF 298 (508)
Q Consensus 222 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 298 (508)
+...+++.++...+.+........+.........+..+...+...|++++|...+++........+ ...+..+...+
T Consensus 182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 261 (366)
T d1hz4a_ 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 261 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 888999999999888766533211110111234566677788889999999999988766432222 33455677788
Q ss_pred HhcCCHHHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044044 299 CYANDWNEAKRLFIEMMDQ----GVQPD-VVTFSVIMDELCKNGKMDKASRLLELMIW 351 (508)
Q Consensus 299 ~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 351 (508)
...|++++|...++++... +..|+ ...+..+..+|.+.|++++|.+.+++.++
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8889999999988877632 33332 33566677778888888888888877654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.31 E-value=9e-10 Score=97.74 Aligned_cols=219 Identities=10% Similarity=0.046 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHc--------------cCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 044044 229 IVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCK--------------EGFVDKAKELFLKMKDENINPDVVTYTSV 294 (508)
Q Consensus 229 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 294 (508)
+.+..+|+++... .+.+...|...+..+.. .+..++|..+|++..+...+.+...|...
T Consensus 33 ~Rv~~vyerAl~~-------~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~y 105 (308)
T d2onda1 33 KRVMFAYEQCLLV-------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 105 (308)
T ss_dssp HHHHHHHHHHHHH-------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4455667776664 34455666555543322 22346777777777665344455566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHH-HHcCCC
Q 044044 295 IRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDG-YCLTDK 373 (508)
Q Consensus 295 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~ 373 (508)
+......|+++.|..+|+++++.........|...+..+.+.|+.+.|.++|+.+++.+.. +...|...... +...|+
T Consensus 106 a~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~ 184 (308)
T d2onda1 106 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCC
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccC
Confidence 7777777788888888877776532223446677777777777777787777777765432 33333333322 334567
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HhHHHHHHHHHHhcCCHHHHHHH
Q 044044 374 IDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKG-IKPT--VVTYNTLFLGLFEIHQVERALKL 450 (508)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 450 (508)
.+.|..+|+.+.+.. +.+...|...+..+...|+++.|..+|++.+... ..|. ...|...+.--...|+.+.+.++
T Consensus 185 ~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~ 263 (308)
T d2onda1 185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777653 5566777777777777777777777777777653 2222 33566666666667777777777
Q ss_pred HHHHHH
Q 044044 451 FDEMRR 456 (508)
Q Consensus 451 ~~~~~~ 456 (508)
++++.+
T Consensus 264 ~~r~~~ 269 (308)
T d2onda1 264 EKRRFT 269 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776655
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.25 E-value=1.8e-11 Score=110.60 Aligned_cols=249 Identities=8% Similarity=-0.068 Sum_probs=142.6
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHh----------cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAK----------NKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKM 155 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (508)
..++|+++++.+++.+|. +..+|+.....+.. .|++++|+.+++...+.. +.+...|..+..++...
T Consensus 44 ~~~~al~~~~~~l~~~P~--~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 44 LDESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHh
Confidence 348899999999998887 77777655444333 233667777777776653 44556666666666655
Q ss_pred CC--cchHHHHHHHHHhCCCCCCHHhHH-HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHH
Q 044044 156 GR--VSHGFVVLGRILRSCFTPNAVTFT-SLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVAL 232 (508)
Q Consensus 156 g~--~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 232 (508)
++ +++|...+.+++... +.+...+. .....+...+..++|+..++++...+ +.+..+|+.+..++.+.|++++|.
T Consensus 121 ~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHH
Confidence 54 566777777766653 22344433 33355556677777777777766654 335666777777777777766665
Q ss_pred HHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 044044 233 NLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFI 312 (508)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 312 (508)
..++...... |+. ......+...+..+++...+....... +++...+..+...+...|++++|...+.
T Consensus 199 ~~~~~~~~~~--------~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 266 (334)
T d1dcea1 199 PQGRLPENVL--------LKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQ 266 (334)
T ss_dssp SCCSSCHHHH--------HHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHhH--------HHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5444433321 111 112223344455555666666555442 2233444445555555566666666665
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 044044 313 EMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWR 352 (508)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 352 (508)
+..... +.+...+..+..++...|+.++|.+.++.+++.
T Consensus 267 ~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 267 ELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 554432 223345555555666666666666666666554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.23 E-value=4.2e-11 Score=108.07 Aligned_cols=215 Identities=7% Similarity=-0.055 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCccccCCHhHHH-HHHHHHHccCC
Q 044044 192 RIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTG--HTIVALNLFEEMANGNGEFGVVCKPNTVTYN-TIIDGLCKEGF 268 (508)
Q Consensus 192 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~ 268 (508)
++++|+..++...... +.+...|..+..++...+ ++++|+..+.++...+ +++...+. .....+...+.
T Consensus 88 ~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~ 159 (334)
T d1dcea1 88 LVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVA 159 (334)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-------chhhhhhhhHHHHHHHhccc
Confidence 3444455555444432 223444444444443332 2445555555554432 22333332 22234444455
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 044044 269 VDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLEL 348 (508)
Q Consensus 269 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 348 (508)
+++|+..++++.+... -+...|+.+...+.+.|++++|...+....+. .|+ .......+...+..+++...+..
T Consensus 160 ~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~ 233 (334)
T d1dcea1 160 PAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHR 233 (334)
T ss_dssp HHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHH
T ss_pred cHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHH
Confidence 5555555555544421 23444555555555555544444333322221 000 01112223344445555555555
Q ss_pred HHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 349 MIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 349 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
..... +++...+..++..+...|+.++|...+.+..+.+ +.+...|..++.++...|++++|++.++++++.
T Consensus 234 ~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 234 WLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55442 2233344444455555566666666666555443 223445555566666666666666666666654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=2.9e-10 Score=98.29 Aligned_cols=153 Identities=8% Similarity=-0.100 Sum_probs=97.5
Q ss_pred CChHHHHHHHHHhHHcCCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 85 ITPNEALCIFDYMLRMHPSP--PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
.+.+.|+.-+++++...... -...+|..++.+|.+.|++++|++.|++.++.. +-+..+|..+..++.+.|++++|+
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhh
Confidence 35566676777776554321 123466667777888888888888888887753 446677777777777788888888
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
..|+++++.. +.+..++..+..++...|++++|+..|++..+.. +.+......+..++.+.+..+.+..+......
T Consensus 92 ~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 92 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 8777777653 2345567777777777777777777777776653 22344443444444455554445444444444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=1.8e-09 Score=93.11 Aligned_cols=220 Identities=10% Similarity=-0.077 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 044044 269 VDKAKELFLKMKDENINP---DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRL 345 (508)
Q Consensus 269 ~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 345 (508)
.+.++.-+++........ ....+..+...|.+.|++++|++.|++.++.. +-+..+|..+..++.+.|++++|...
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 445555555655431111 13456666777888888888888888888763 44667788888888888888888888
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 044044 346 LELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIK 425 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 425 (508)
|+++++.... +..++..+..+|...|++++|...|++..+.. +.+......+...+...+..+.+..+.........
T Consensus 94 ~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 170 (259)
T d1xnfa_ 94 FDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK- 170 (259)
T ss_dssp HHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC-
T ss_pred hhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch-
Confidence 8888876432 46677778888888888888888888887764 34555544445555555655555555555554322
Q ss_pred CCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCH
Q 044044 426 PTVVTYNTLFLGLFEIHQ----VERALKLFDEMRRNHVAA-DTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNI 498 (508)
Q Consensus 426 p~~~~~~~l~~~~~~~g~----~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 498 (508)
+...+. ++..+..... .+.+...+...... .| ...+|..+...|...|++++|.+.|++.+.. .|+.
T Consensus 171 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 242 (259)
T d1xnfa_ 171 -EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 242 (259)
T ss_dssp -CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred -hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCC
Confidence 222222 2222222111 22222222111111 11 2235666778888888888888888888753 4543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.90 E-value=5.5e-06 Score=70.86 Aligned_cols=232 Identities=13% Similarity=-0.001 Sum_probs=172.5
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 044044 252 NTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQPDVVTFS 327 (508)
Q Consensus 252 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 327 (508)
|+..+..|...+.+.+++++|+++|++..+.| +...+..|...|.. ..+...|...++.....+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 35567778888899999999999999998876 56667677777765 568999999999988876 344444
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH----cCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044044 328 VIMDELCK----NGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYC----LTDKIDHARKLFVSMESNGCMHDVVSYNTL 399 (508)
Q Consensus 328 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 399 (508)
.+...+.. ..+.+.|...++...+.|.. .....+...+. .......+...+...... .+...+..+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence 44444443 56788899999998887632 22233333333 345678888888887775 477788888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044044 400 INWYCK----NKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE----IHQVERALKLFDEMRRNHVAADTYTYNNFID 471 (508)
Q Consensus 400 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 471 (508)
...+.. ..+...+...++...+.| +......+...+.. ..+.++|+.+|++..+.| +...+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 888875 567888999999888865 56666777766665 678999999999999876 5666677777
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcCCccCHHHH
Q 044044 472 GLCK----SGFVLEALELFRAIRDSKYELNIVSY 501 (508)
Q Consensus 472 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~ 501 (508)
.|.+ ..+.++|.++|++..+.|..+-...+
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g~~~A~~~l 256 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLGAKGACDIL 256 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 7765 34789999999999998866644433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.87 E-value=4.9e-08 Score=85.35 Aligned_cols=196 Identities=13% Similarity=0.048 Sum_probs=119.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----CCHHhHHHH
Q 044044 295 IRGFCYANDWNEAKRLFIEMMDQ----GVQP-DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVN-----PNTYTYNTL 364 (508)
Q Consensus 295 ~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l 364 (508)
...|...|++++|.+.|.+..+. +..+ -..+|..+..+|.+.|++++|...++...+.... ....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44566777777777777766542 1111 1246677777777888888888877766542111 113345555
Q ss_pred HHHHH-cCCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------hHHH
Q 044044 365 IDGYC-LTDKIDHARKLFVSMESN----GCMH-DVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTV------VTYN 432 (508)
Q Consensus 365 ~~~~~-~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~ 432 (508)
...|. ..|++++|.+.+++..+. +.++ ...++..++..+...|++++|+..|+++......... ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 55664 458888888888776532 1111 1344677788888888888888888888775322111 1234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-C---CHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 044044 433 TLFLGLFEIHQVERALKLFDEMRRNHVA-A---DTYTYNNFIDGLCK--SGFVLEALELFRAIR 490 (508)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~---~~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 490 (508)
..+..+...|+++.|.+.+++..+.... + .......++.++.. .+.+++|+..|+++.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 4555667788888888888888765321 1 12344556666654 245778887776654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.86 E-value=8.1e-06 Score=69.75 Aligned_cols=222 Identities=14% Similarity=0.010 Sum_probs=111.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCh
Q 044044 213 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCK----EGFVDKAKELFLKMKDENINPDV 288 (508)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 288 (508)
..+..|...+.+.+++++|+++|++..+.+ +...+..|...|.. ..++..|..++......+ +.
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~ 70 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YS 70 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---cc
Confidence 344444455555555555555555555433 33344444444443 345555555555555443 22
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHh
Q 044044 289 VTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCK----NGKMDKASRLLELMIWRGVNPNTYT 360 (508)
Q Consensus 289 ~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 360 (508)
.....+...+.. ..+.+.|...++...+.|. ......+...+.. ......+...+......+ +...
T Consensus 71 ~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~ 144 (265)
T d1ouva_ 71 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDG 144 (265)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred chhhccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccch
Confidence 222233222221 3445556666655555442 1122222222221 233444555555444332 4444
Q ss_pred HHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 044044 361 YNTLIDGYCL----TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK----NKDVEEALSLYSEMLSKGIKPTVVTYN 432 (508)
Q Consensus 361 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~ 432 (508)
+..+...|.. ..+...+...++...+.| +......+...|.. ..++++|+.+|++..+.| ++..+.
T Consensus 145 ~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~ 218 (265)
T d1ouva_ 145 CTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCF 218 (265)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred hhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHH
Confidence 5555555543 345566666666666543 55555555555554 456777777777777665 345555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 044044 433 TLFLGLFE----IHQVERALKLFDEMRRNH 458 (508)
Q Consensus 433 ~l~~~~~~----~g~~~~a~~~~~~~~~~~ 458 (508)
.|...|.. ..+.++|.++|++..+.|
T Consensus 219 ~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 219 NLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 66666554 336667777777766655
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=2.8e-07 Score=74.60 Aligned_cols=121 Identities=11% Similarity=-0.021 Sum_probs=70.7
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHc
Q 044044 186 GLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCK 265 (508)
Q Consensus 186 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (508)
.+...|++++|++.|.++. +++..+|..+..+|...|++++|++.|++..+.+ +.+...|..+..++.+
T Consensus 14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-------p~~~~a~~~~g~~~~~ 82 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-------KHLAVAYFQRGMLYYQ 82 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-------hhhhhhHHHHHHHHHh
Confidence 4455566666666666532 4455666666666666677777777666666654 3445566666666666
Q ss_pred cCCHHHHHHHHHHHhhCCCCC---------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 266 EGFVDKAKELFLKMKDENINP---------------DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 266 ~g~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
.|++++|.+.|++........ ...++..+..++.+.|++++|.+.++...+.
T Consensus 83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 677777766666655421000 0123334455556666666666666665554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=2.8e-07 Score=74.65 Aligned_cols=125 Identities=11% Similarity=0.035 Sum_probs=79.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 044044 331 DELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVE 410 (508)
Q Consensus 331 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 410 (508)
..+...|+++.|++.|..+ .+|+..+|..+..+|...|++++|.+.|++.++.+ +.+...|..+..++.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHH
Confidence 3455666777776666543 23455666666677777777777777777766665 456666777777777777777
Q ss_pred HHHHHHHHHHHCCCC--------------C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 044044 411 EALSLYSEMLSKGIK--------------P-TVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVA 460 (508)
Q Consensus 411 ~A~~~~~~~~~~~~~--------------p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 460 (508)
+|++.|++.+..... . ...++..+..++...|++++|.+.++...+....
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 777777666543110 0 0234556667777777788877777777765433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.76 E-value=1.9e-07 Score=81.58 Aligned_cols=213 Identities=13% Similarity=-0.010 Sum_probs=142.6
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCCcch
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSA----GLFP-DIYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~ 160 (508)
++++|.++|.++ ...|...|++++|.+.|+++.+. +-.+ -..+|..+..+|.+.|++++
T Consensus 32 ~~~~Aa~~y~~a----------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~ 95 (290)
T d1qqea_ 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (290)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHH
Confidence 466677666544 56788999999999999988653 2112 23578888999999999999
Q ss_pred HHHHHHHHHhC----C-CCCCHHhHHHHHHHHH-hcCCHHHHHHHHHHhhhc----CCCC-CHhhHHHHHHHHHhcCChH
Q 044044 161 GFVVLGRILRS----C-FTPNAVTFTSLIKGLC-AESRIMEAAALFTKHRVF----ACEP-DVFTYNTLINGLCRTGHTI 229 (508)
Q Consensus 161 a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~ 229 (508)
|.+.+++.... | ......++..+...|. ..|++++|++.|++.... +.++ -..++..+...+...|+++
T Consensus 96 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~ 175 (290)
T d1qqea_ 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHH
Confidence 99999987652 1 1111345666666664 469999999999887543 1111 1345788999999999999
Q ss_pred HHHHHHHHHHhCCCCCCccccCC-HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC-CC---hhhHHHHHHHHHh--cC
Q 044044 230 VALNLFEEMANGNGEFGVVCKPN-TVTYNTIIDGLCKEGFVDKAKELFLKMKDENIN-PD---VVTYTSVIRGFCY--AN 302 (508)
Q Consensus 230 ~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~--~g 302 (508)
+|+..|+++......... .... ...+...+..+...|+++.|...+++..+.... ++ ......++.++.. .+
T Consensus 176 ~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e 254 (290)
T d1qqea_ 176 EASDIYSKLIKSSMGNRL-SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (290)
T ss_dssp HHHHHHHHHHHTTSSCTT-TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhCccchh-hhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHH
Confidence 999999998886532111 0111 123445566677889999999999998775321 11 2234555665544 24
Q ss_pred CHHHHHHHHHHHH
Q 044044 303 DWNEAKRLFIEMM 315 (508)
Q Consensus 303 ~~~~a~~~~~~~~ 315 (508)
.+++|+..|+.+.
T Consensus 255 ~~~eai~~y~~~~ 267 (290)
T d1qqea_ 255 QLSEHCKEFDNFM 267 (290)
T ss_dssp THHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHh
Confidence 5777777775543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=2.9e-08 Score=73.27 Aligned_cols=92 Identities=11% Similarity=0.013 Sum_probs=73.7
Q ss_pred cCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 044044 77 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMG 156 (508)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 156 (508)
.|..++..|++++|+..|+++++..|. +...|..+..++...|++++|+..++...+.+ +.+...|..+..++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc--chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHcc
Confidence 345556678888888888888888877 77888888888888888888888888888764 557777888888888888
Q ss_pred CcchHHHHHHHHHhC
Q 044044 157 RVSHGFVVLGRILRS 171 (508)
Q Consensus 157 ~~~~a~~~~~~~~~~ 171 (508)
++++|+..+++.++.
T Consensus 86 ~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKH 100 (117)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888888888765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=5.6e-07 Score=66.08 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=44.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 044044 366 DGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVE 445 (508)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 445 (508)
..+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|+..+.++++.++. +...|..+..++...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHH
Confidence 34444555555555555554443 344445555555555555555555555555544322 4444555555555555555
Q ss_pred HHHHHHHHHHH
Q 044044 446 RALKLFDEMRR 456 (508)
Q Consensus 446 ~a~~~~~~~~~ 456 (508)
+|+..|++..+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 55555555554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=6.1e-07 Score=70.17 Aligned_cols=118 Identities=12% Similarity=0.119 Sum_probs=77.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 044044 364 LIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQ 443 (508)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 443 (508)
....|.+.|++++|...|+++.+.+ +.+...|..+..+|...|++++|+..|+++++.... +..+|..++.++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCC
Confidence 3456667777777777777777765 556777777777777778888888888777776422 55677777777778888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHH
Q 044044 444 VERALKLFDEMRRNHVAADTYTYNNFIDG--LCKSGFVLEALE 484 (508)
Q Consensus 444 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~ 484 (508)
+++|.+.+++..+.. +-+...+..+..+ ....+.+++|..
T Consensus 94 ~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 94 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888777777653 2234444443333 223334444443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=1.4e-06 Score=68.03 Aligned_cols=94 Identities=13% Similarity=0.016 Sum_probs=75.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044044 328 VIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNK 407 (508)
Q Consensus 328 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 407 (508)
.....|.+.|++++|...|.++++.. +.+...|..+..+|...|++++|...|+++++.+ +.+...|..++.++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence 34556778888888888888888775 3367788888888888888888888888888775 567788888888888888
Q ss_pred CHHHHHHHHHHHHHCC
Q 044044 408 DVEEALSLYSEMLSKG 423 (508)
Q Consensus 408 ~~~~A~~~~~~~~~~~ 423 (508)
++++|+..+++.....
T Consensus 93 ~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 93 KFRAALRDYETVVKVK 108 (159)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcC
Confidence 8888888888888764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.56 E-value=6.2e-07 Score=73.33 Aligned_cols=100 Identities=14% Similarity=-0.010 Sum_probs=86.2
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044044 321 PDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLI 400 (508)
Q Consensus 321 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (508)
|+...+......+.+.|++++|+..|.++++.. +.+...|..+..+|.+.|++++|+..|+++++.. +-+..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 667777788889999999999999999988875 3368889999999999999999999999998875 55788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 044044 401 NWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
.+|...|++++|+..|+++++.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999988764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.52 E-value=8.4e-07 Score=72.52 Aligned_cols=99 Identities=12% Similarity=-0.034 Sum_probs=65.7
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHh
Q 044044 175 PNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 254 (508)
Q Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 254 (508)
|++..+......+.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|+..|++....+ +-+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-------p~~~~ 73 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------GQSVK 73 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-------TTCHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-------CCcHH
Confidence 455555556666677777777777777666654 3456667777777777777777777777776643 33456
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhh
Q 044044 255 TYNTIIDGLCKEGFVDKAKELFLKMKD 281 (508)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (508)
+|..++.+|...|++++|+..|+++.+
T Consensus 74 a~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 74 AHFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 667777777777777777777766554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.48 E-value=8.4e-08 Score=70.01 Aligned_cols=83 Identities=16% Similarity=0.112 Sum_probs=44.8
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
..|++++|+..|+++++..|. +..+|..++.++.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+
T Consensus 28 ~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~A~ 104 (112)
T d1hxia_ 28 KLANLAEAALAFEAVCQKEPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAAL 104 (112)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHhhhcccccc--cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHHHH
Confidence 345555555555555555554 55555555555555555555555555555442 334445555555555555555555
Q ss_pred HHHHHH
Q 044044 163 VVLGRI 168 (508)
Q Consensus 163 ~~~~~~ 168 (508)
+.+++.
T Consensus 105 ~~l~~~ 110 (112)
T d1hxia_ 105 ASLRAW 110 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.44 E-value=0.00035 Score=60.63 Aligned_cols=129 Identities=11% Similarity=0.043 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 044044 111 NILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAE 190 (508)
Q Consensus 111 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (508)
..++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+...+. -+..+|..+...+.+.
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDG 82 (336)
T ss_dssp -----------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhC
Confidence 3444555555666666666554331 344555555555555555555433 1444555555555554
Q ss_pred CCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHcc
Q 044044 191 SRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKE 266 (508)
Q Consensus 191 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 266 (508)
....-| .+.......+......++..|-..|.+++...+++...... ..+...++.++..|++.
T Consensus 83 ~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-------~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 83 KEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-------RAHMGMFTELAILYSKF 146 (336)
T ss_dssp TCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-------TCCHHHHHHHHHHHHTT
T ss_pred cHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-------ccchHHHHHHHHHHHHh
Confidence 443322 11111222344444455666666666666666666554332 33445555666666554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.44 E-value=1.3e-06 Score=63.45 Aligned_cols=89 Identities=16% Similarity=0.004 Sum_probs=51.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044044 399 LINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGF 478 (508)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 478 (508)
++..+.+.|++++|+..|++.+...+. +..+|..+..++.+.|++++|+..+++..+.. +.+...|..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 344555566666666666666554322 45555666666666666666666666665542 2245555566666666666
Q ss_pred HHHHHHHHHHH
Q 044044 479 VLEALELFRAI 489 (508)
Q Consensus 479 ~~~A~~~~~~m 489 (508)
+++|++.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.41 E-value=0.00042 Score=60.10 Aligned_cols=134 Identities=10% Similarity=0.015 Sum_probs=96.2
Q ss_pred CCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcch
Q 044044 81 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 160 (508)
..+.|.++.|..+|..+ .-|..++..+.+.++++.|.+.+.+. -+..+|..+...|.+......
T Consensus 24 c~~~~lye~A~~lY~~~----------~d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~l 87 (336)
T d1b89a_ 24 CYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 87 (336)
T ss_dssp -----CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhC----------CCHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHH
Confidence 34667899999999854 34888999999999999999888755 266789999999888766543
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 044044 161 GFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEE 237 (508)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 237 (508)
+ .+.......+......++..|-..|.+++...+++...... ..+...++.++..|++.+ .++..+.++.
T Consensus 88 a-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl~e~l~~ 157 (336)
T d1b89a_ 88 A-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLEL 157 (336)
T ss_dssp H-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred H-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHHHHHHHh
Confidence 3 22233334566667788999999999999999999876442 557778889999888764 3444444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=1.4e-06 Score=64.13 Aligned_cols=92 Identities=18% Similarity=0.253 Sum_probs=47.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHH
Q 044044 364 LIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNK---DVEEALSLYSEMLSKGIKPT-VVTYNTLFLGLF 439 (508)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 439 (508)
++..+...+++++|++.|++....+ +.++.++..+..++.+.+ ++++|+.++++++..+..|+ ..++..++.+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 4444455555555555555555544 445555555555554433 23345555555554432222 124455555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 044044 440 EIHQVERALKLFDEMRR 456 (508)
Q Consensus 440 ~~g~~~~a~~~~~~~~~ 456 (508)
+.|++++|++.|+++.+
T Consensus 84 ~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 55555555555555555
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1e-06 Score=64.86 Aligned_cols=104 Identities=12% Similarity=0.039 Sum_probs=83.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 044044 397 NTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQ---VERALKLFDEMRRNHVAAD-TYTYNNFIDG 472 (508)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~li~~ 472 (508)
..++..+...+++++|.+.|++.+..++. +..++..+..++.+.++ +++|+.+++++.+.+..|+ ...|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 45777888999999999999999997543 78889999999987554 5579999999987654443 2467788999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCccCHHHHHH
Q 044044 473 LCKSGFVLEALELFRAIRDSKYELNIVSYNC 503 (508)
Q Consensus 473 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 503 (508)
|.+.|++++|++.|+++++ +.|+..-...
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~ 110 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKE 110 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHHH
Confidence 9999999999999999997 4676554433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=4e-07 Score=85.90 Aligned_cols=112 Identities=8% Similarity=-0.092 Sum_probs=42.3
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhH
Q 044044 212 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTY 291 (508)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 291 (508)
...+..+...+.+.|+.++|...++...... + ..++..++..+...|++++|...|++..+.. +.+...|
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~ 189 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--------C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPY 189 (497)
T ss_dssp -----------------------CCHHHHHH--------H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--------H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHH
Confidence 3344445555555555555555544443311 1 2344445555555555555555555555431 2234455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 044044 292 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELC 334 (508)
Q Consensus 292 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 334 (508)
+.+...+...|+..+|...|.+.+... +|-..++..+...+.
T Consensus 190 ~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 190 NQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 555555555555555555555555442 334444444444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=2.8e-07 Score=87.02 Aligned_cols=110 Identities=7% Similarity=-0.186 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 044044 289 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGY 368 (508)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (508)
..+..+...+.+.|+.++|...+....... ....+..+...+...|++++|...|.++.+.. +.+...|+.+...+
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILA 196 (497)
T ss_dssp ----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 334444444555555555555444443321 12234444455555555555555555555442 11344555555555
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044044 369 CLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWY 403 (508)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (508)
...|+..+|...|.+..... +|...++..|...+
T Consensus 197 ~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 55555555555555555443 34444444444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=2.5e-05 Score=61.35 Aligned_cols=82 Identities=10% Similarity=-0.058 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044044 394 VSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGL 473 (508)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 473 (508)
.+|+.+..+|.+.|++++|+..+++.++..+. +..++..++.+|...|++++|+..|++..+.+. .+......+..+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 35667788888888888888888888886433 677888888888888888888888888887532 2555555554444
Q ss_pred HhcC
Q 044044 474 CKSG 477 (508)
Q Consensus 474 ~~~g 477 (508)
.+.+
T Consensus 141 ~~~~ 144 (170)
T d1p5qa1 141 QRIR 144 (170)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=3e-05 Score=60.81 Aligned_cols=77 Identities=9% Similarity=-0.132 Sum_probs=60.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGL 438 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (508)
+|+.+..+|.+.|++++|+..++..++.+ |.++..|..++.+|...|++++|+..|+++++..+. +......+..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 140 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 56667788889999999999999988875 568888999999999999999999999999886432 444444444443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=9.5e-06 Score=60.35 Aligned_cols=94 Identities=12% Similarity=0.153 Sum_probs=50.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-----HhHHHHHH
Q 044044 362 NTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIK-PT-----VVTYNTLF 435 (508)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~-----~~~~~~l~ 435 (508)
..+...+.+.|++++|+..|.+.++.+ +.+...|..+..+|.+.|++++|+..++++++.... +. ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 344555556666666666666655553 345555666666666666666666666665543110 00 12444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 044044 436 LGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 436 ~~~~~~g~~~~a~~~~~~~~~ 456 (508)
..+...+++++|++.|++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 555555555555555555544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=1.6e-05 Score=59.03 Aligned_cols=95 Identities=15% Similarity=0.109 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-----HHHHHHH
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVA-AD-----TYTYNNF 469 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~-----~~~~~~l 469 (508)
+..++..+...|++++|+..|.+.++.++. +...+..+..+|...|++++|++.++++++.... +. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 334555666666666666666666665322 4556666666666666666666666665542100 01 1245555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 044044 470 IDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 470 i~~~~~~g~~~~A~~~~~~m~~ 491 (508)
...+...+++++|++.|++.+.
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 5666666666666666666554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.06 E-value=6.4e-05 Score=59.24 Aligned_cols=121 Identities=9% Similarity=0.068 Sum_probs=75.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH
Q 044044 365 IDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQV 444 (508)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 444 (508)
.......|++++|.+.|.+....- +... +......+-+...-..+... ....+..++.++...|++
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCc
Confidence 345667788888888888877641 1100 00000000011111111111 234566777888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCccCHHH
Q 044044 445 ERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR-----DSKYELNIVS 500 (508)
Q Consensus 445 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~ 500 (508)
++|+..++++.+.. +-+...|..++.+|.+.|+.++|++.|+++. +.|+.|...+
T Consensus 84 ~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 84 SAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred hHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 88888888888763 3477788888888888888888888888874 3588887755
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.03 E-value=2.6e-06 Score=72.15 Aligned_cols=122 Identities=8% Similarity=-0.054 Sum_probs=76.8
Q ss_pred CCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCcc
Q 044044 81 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD-IYTHSILINCFCKMGRVS 159 (508)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 159 (508)
.+..|++++|+..+++.++..|. +...+..++..++..|++++|+..|+...+. .|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~--d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccH
Confidence 45678999999999999999988 8999999999999999999999999999875 343 444444444433222222
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 044044 160 HGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF 206 (508)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (508)
++..-.......+.+++...+......+...|+.++|.+.++++.+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 21111110000111122223333445566677777777777776655
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.03 E-value=9.2e-05 Score=56.77 Aligned_cols=63 Identities=21% Similarity=0.107 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 394 VSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
.+|+.+..+|.+.|++++|++.++++++..+ .+..+|..++.++...|++++|+..|++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3556677777777777777777777776542 25667777777777777777777777777764
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.03 E-value=8.1e-05 Score=57.10 Aligned_cols=64 Identities=14% Similarity=-0.103 Sum_probs=55.5
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKG 423 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 423 (508)
.+|+.+..+|.+.|++++|++.++.+++.+ +.++.+|..++.++...|++++|+..|++.++..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 466778888999999999999999988876 6688899999999999999999999999998864
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.00 E-value=6e-05 Score=59.05 Aligned_cols=80 Identities=11% Similarity=0.010 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044044 392 DVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFID 471 (508)
Q Consensus 392 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 471 (508)
+...|..+..++.+.|++++|+..+.++++..+. +..+|..+..++...|++++|+..|+++.+... .+......+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-~n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 3455677778888888888888888888876433 677888888888888888888888888887532 24555555544
Q ss_pred HH
Q 044044 472 GL 473 (508)
Q Consensus 472 ~~ 473 (508)
+.
T Consensus 154 ~~ 155 (169)
T d1ihga1 154 VK 155 (169)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.99 E-value=7.2e-05 Score=58.57 Aligned_cols=79 Identities=6% Similarity=-0.137 Sum_probs=62.9
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLG 437 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 437 (508)
...+..+..++.+.|++++|+..++++++.. +.+...|..++.++...|++++|+..|+++++..+. +......+..+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~ 154 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4566777888999999999999999998876 668888999999999999999999999999986432 44555555444
Q ss_pred H
Q 044044 438 L 438 (508)
Q Consensus 438 ~ 438 (508)
.
T Consensus 155 ~ 155 (169)
T d1ihga1 155 K 155 (169)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.94 E-value=0.00013 Score=57.01 Aligned_cols=61 Identities=13% Similarity=0.076 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
|+.+..+|.+.|++++|+..+++.++..+ .+...|..+..++...|++++|+..|+++.+.
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444555555555555555555554422 24445555555555555555555555555543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.92 E-value=2.8e-05 Score=59.11 Aligned_cols=113 Identities=12% Similarity=0.041 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 044044 372 DKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK----------NKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI 441 (508)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 441 (508)
+.+++|...|+...+.. |.+...+..+..++.. .+.+++|+..|+++++..+. +..+|..+..+|...
T Consensus 11 ~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHHHHc
Confidence 34555555555555443 4444455555444432 23345566666666654322 455566666665544
Q ss_pred C-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044044 442 H-----------QVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKY 494 (508)
Q Consensus 442 g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 494 (508)
| ++++|.+.|++..+. .|+...|...+..+ .+|.+++.+..+.|+
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred ccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 3 357778888877774 45555554433333 455666666666553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.91 E-value=0.00022 Score=55.62 Aligned_cols=82 Identities=13% Similarity=-0.051 Sum_probs=62.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHH
Q 044044 178 VTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYN 257 (508)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (508)
.+|..+..+|.+.|++++|+..+++..... +.+..+|..+..++...|++++|+..|+++...+ |.+.....
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-------P~n~~~~~ 136 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-------PQNKAARL 136 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHH
Confidence 356667788888999999999999888775 5578888888999999999999999999988865 34555555
Q ss_pred HHHHHHHccC
Q 044044 258 TIIDGLCKEG 267 (508)
Q Consensus 258 ~l~~~~~~~g 267 (508)
.+..+..+.+
T Consensus 137 ~l~~~~~~~~ 146 (168)
T d1kt1a1 137 QIFMCQKKAK 146 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.86 E-value=1.8e-05 Score=60.21 Aligned_cols=71 Identities=7% Similarity=-0.001 Sum_probs=52.1
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcC----------ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNK----------HYDTVLSLFKRLNSAGLFPDIYTHSILINCF 152 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (508)
+.+.+++|+..|+.+++.+|. +..++..+..++...+ .+++|+..|+++++.. +.+..+|..+..+|
T Consensus 9 r~~~fe~A~~~~e~al~~~P~--~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCc--chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence 345689999999999999988 8899999998887543 4466777777776653 44566666666666
Q ss_pred HhcC
Q 044044 153 CKMG 156 (508)
Q Consensus 153 ~~~g 156 (508)
...|
T Consensus 86 ~~~g 89 (145)
T d1zu2a1 86 TSFA 89 (145)
T ss_dssp HHHH
T ss_pred HHcc
Confidence 5544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.82 E-value=0.00018 Score=56.57 Aligned_cols=70 Identities=10% Similarity=0.121 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhh-----CCCCCC
Q 044044 213 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKD-----ENINPD 287 (508)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~ 287 (508)
..+..+...+...|++++|+..++.+...+ +-+...|..++.++.+.|+.++|++.|+++.+ .|+.|.
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-------P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 445566666777777777777777776654 45666777777777777777777777766533 356665
Q ss_pred hh
Q 044044 288 VV 289 (508)
Q Consensus 288 ~~ 289 (508)
..
T Consensus 141 ~~ 142 (179)
T d2ff4a2 141 PT 142 (179)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.81 E-value=2.3e-05 Score=66.14 Aligned_cols=123 Identities=11% Similarity=-0.050 Sum_probs=71.6
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 044044 368 YCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERA 447 (508)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 447 (508)
..+.|++++|+..+++.++.. |.|...+..++..++..|++++|.+.++...+.... +...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHH
Confidence 345688888888888877775 667778888888888888888888888887775321 233344443333332222222
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 448 LKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
..-.......+-+++...+......+.+.|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111111001111122233334455667778888888888887653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.54 E-value=0.00085 Score=51.31 Aligned_cols=90 Identities=16% Similarity=0.082 Sum_probs=52.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-C----------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC--
Q 044044 401 NWYCKNKDVEEALSLYSEMLSKGIK-P----------TVVTYNTLFLGLFEIHQVERALKLFDEMRRN-----HVAAD-- 462 (508)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~~~-p----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~-- 462 (508)
..+...|++++|+..|++.++.... | ...+|+.+..+|...|++++|++.+++..+. ...++
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3445556666666666666643110 1 1245666667777777777777766665531 11111
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 463 ---TYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 463 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
...+..+..+|...|++++|++.|++.+
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1245556677777788888877777765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.41 E-value=0.0013 Score=50.13 Aligned_cols=92 Identities=14% Similarity=0.083 Sum_probs=62.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCC-CC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-
Q 044044 365 IDGYCLTDKIDHARKLFVSMESNGC-MH----------DVVSYNTLINWYCKNKDVEEALSLYSEMLSK-----GIKPT- 427 (508)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~- 427 (508)
...+...|++++|+..|++.++... .| ....|+.+..+|...|++++|+..+++.+.. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3445556777777777776654210 01 1356778888888888888888888887642 11121
Q ss_pred ----HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 428 ----VVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 428 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
...+..+..+|...|++++|++.|++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22567788899999999999999988764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.00091 Score=45.99 Aligned_cols=83 Identities=11% Similarity=-0.049 Sum_probs=57.8
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhh
Q 044044 211 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVT 290 (508)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 290 (508)
+...+..+...+.+.|++++|+..|++.....+...........+++.+..++.+.|++++|.+.++++.+... -+..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P-~~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP-EHQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc-CCHHH
Confidence 34455678888999999999999999887643211100112256788899999999999999999999988632 23444
Q ss_pred HHHH
Q 044044 291 YTSV 294 (508)
Q Consensus 291 ~~~l 294 (508)
++.+
T Consensus 83 ~~Nl 86 (95)
T d1tjca_ 83 NGNL 86 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.15 E-value=0.0075 Score=44.26 Aligned_cols=81 Identities=7% Similarity=-0.113 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 044044 407 KDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE----IHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCK----SGF 478 (508)
Q Consensus 407 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 478 (508)
.+.++|++++++..+.| +......|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34445555555544443 23333333333332 234555555555555543 23333334333433 234
Q ss_pred HHHHHHHHHHHHHcC
Q 044044 479 VLEALELFRAIRDSK 493 (508)
Q Consensus 479 ~~~A~~~~~~m~~~g 493 (508)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 555555555555554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.13 E-value=0.011 Score=43.28 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cC
Q 044044 371 TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK----NKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE----IH 442 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 442 (508)
..+.++|.+++++..+.| ++.....|...|.. ..+.++|+++|++..+.| ++.....|...|.. ..
T Consensus 36 ~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~ 109 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 109 (133)
T ss_dssp TSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred ccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCC
Confidence 345566666666666554 44455555555543 345666777776666654 33444445554443 34
Q ss_pred CHHHHHHHHHHHHHCC
Q 044044 443 QVERALKLFDEMRRNH 458 (508)
Q Consensus 443 ~~~~a~~~~~~~~~~~ 458 (508)
+.++|.++|++..+.|
T Consensus 110 d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 6666666666666654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.0051 Score=42.01 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLSKG-----IKPT-VVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
+-.++..+.+.|++++|+..|++.++.. ..++ ..++..+..++.+.|++++|++.++++.+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3345566666666666666666655421 1111 345556666666666666666666666654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.23 E-value=0.1 Score=36.41 Aligned_cols=140 Identities=11% Similarity=0.026 Sum_probs=75.1
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044044 334 CKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEAL 413 (508)
Q Consensus 334 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 413 (508)
.-.|..+++.+++.+..... +..-||.+|--....-+-+...++++.+-+. .|. ...++.....
T Consensus 13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHH
Confidence 34566666666666665442 4445555554444444444444444443221 111 1223333333
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044044 414 SLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSK 493 (508)
Q Consensus 414 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 493 (508)
..+-.+- -+...++..+..+..+|+-+.-.++++.+.+. -++++.....+..+|.+-|...++-+++++..+.|
T Consensus 77 ~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 3332211 13344455566666777777777777776653 35566666677777777777777777777777766
Q ss_pred Cc
Q 044044 494 YE 495 (508)
Q Consensus 494 ~~ 495 (508)
++
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 54
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.00 E-value=0.33 Score=33.79 Aligned_cols=139 Identities=9% Similarity=0.004 Sum_probs=65.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHH
Q 044044 299 CYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHAR 378 (508)
Q Consensus 299 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 378 (508)
.-.|..++..+++.+..... +..-||.++--....-+-+-..+.++.+-+ -.|. ..++++....
T Consensus 13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~---~FDl----------s~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhh---hcCc----------hhhhcHHHHH
Confidence 34566777777776666542 344445454444444455555555544321 1111 1233333333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 379 KLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH 458 (508)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (508)
..+-.+- .+....+..++.....|+-++-.++++++.+. -++++...-.+..+|.+.|+..++-+++.++.+.|
T Consensus 77 ~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 3322221 12233444455555555555555555554442 24455555555555555555555555555555554
Q ss_pred C
Q 044044 459 V 459 (508)
Q Consensus 459 ~ 459 (508)
+
T Consensus 151 ~ 151 (161)
T d1wy6a1 151 E 151 (161)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.93 E-value=0.14 Score=36.00 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=29.6
Q ss_pred CCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 426 PTVVTYNTLFLGLFEIHQ---VERALKLFDEMRRNHVAAD-TYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 426 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
++..|-....+++.+..+ .++++.+++++.+.+ +.+ ...+-.|.-+|.+.|++++|.+.++.+++
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 334444444444444332 344555555555432 112 12333444455555555555555555553
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.78 E-value=1 Score=31.46 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 391 HDVVSYNTLINWYCKNK---DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 391 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
+.+.+--....++++.. +.++++.+++++...+..-....+..|..+|.+.|++++|.+.++.+.+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33444334444444433 3445666666655432111123445555566666666666666666665
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.55 E-value=3.3 Score=36.74 Aligned_cols=53 Identities=6% Similarity=-0.105 Sum_probs=41.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 434 LFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
-+..+...|....|...|..+.+. .+......+.....+.|.++.|+....+.
T Consensus 387 ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 387 RVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 345677889999999999888764 25556667888889999999999876655
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.82 E-value=1 Score=29.59 Aligned_cols=50 Identities=8% Similarity=0.159 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 408 DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 408 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
|.=+..+-+..+......|++....+.+.+|.+.+++..|.++|+..+.+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455555555555566666666666666666666666666666665543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.07 E-value=4.8 Score=35.59 Aligned_cols=53 Identities=8% Similarity=-0.088 Sum_probs=41.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 400 INWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
+..+...|....|...|..+... . +......+.....+.|.++.|+....+..
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~-~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHcCCchHHHHHHHHHHhC-C--CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 55677889999999999888764 2 45566677888889999999997766553
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.43 E-value=2.2 Score=27.95 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044044 192 RIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG 241 (508)
Q Consensus 192 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 241 (508)
+.-+..+-++.+......|++.+..+.+.+|.+.+++..|.++|+.++.+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44456666666666677788888888888888888888888888877765
|