Citrus Sinensis ID: 044089

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-
MKMQDEDLGRERQAETLTDDEENQADSMGEIEDDSGSESSSTHSTPTRNPSDGIDIQPTWPQSYRQSMDIYSTVTSPSLGFLKPSSLSALSGSMSSLYKRSQPASYLESSLSKPLISDLEKEEVLSPRVHWNVPSRSRLSNISDMPRSRMSSISDSLPPARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTGVVVLCLLWIGLVDAVGFHPYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFVLMISFVFCSLLNAGVGICGYLMFGDSIQSQFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKELQSYSVSVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGKISKLK
ccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
cccccHHccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccHHHcccHccccccccccccccccccHccccHHHccccccccHHccccccccccccccHHccccccccccccccccccccccccHHHHccccccccccccccHHHHHHHHHHEEHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccEEEEHHHHHHHHHHHEEEEEEccHHHHHHcccccccccccccccccEEEEEEEEEEEEHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccc
mkmqdedlgrerqaetltddeenqadsmgeieddsgsesssthstptrnpsdgidiqptwpqsyrqsmdiystvtspslgflkpsslsalsgsmsslykrsqpasylesslskplisdlekeevlsprvhwnvpsrsrlsnisdmprsrmssisdslpparkcsLAQSCLNGINVLCGVgllatpyaikeggwsSLSLLFIFGIIAFYTGILLQEcldsapglttypdvgqaafGITGRLIVAIVLYLELFAASIEYLIMMSDnlaslfphtsmnfgglhldchKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTGVVVLCLLWIGLvdavgfhpygtaldlsnlpvtIGLYGFAyaghsvfpniyssmqepkkfpFVLMISFVFCSLLNagvgicgylmfgdsiqsqftlnfpkefVASKVAIWTTVLIPMSKYAMTLTPIALSLeelmpskelqsySVSVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGKISKLK
mkmqdedlgrerqaetltddeenqadsmgeieddsgsesssthstptrnpsdgidiQPTWPQSYRQSMDIYSTVTSPSLGFLKPSSLSALSGSMSSLYKRSQPASYLESSLSKPLISdlekeevlsprvhwnvpsrsrlsnisdmprsRMSSISDSLPPARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTGVVVLCLLWIGLVDAVGFHPYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFVLMISFVFCSLLNAGVGICGYLMFGDSIQSQFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKELQSYSVSVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGKISKLK
MKMQDEDLGRERQAETLTDDEENQAdsmgeieddsgsesssTHSTPTRNPSDGIDIQPTWPQSYRQSMDIYSTVTSPSLGFLKPsslsalsgsmsslYKRSQPASYLESSLSKPLISDLEKEEVLSPRVHWNVPSRSRLSNISDMPRSRMSSISDSLPPARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISvggvittgvvvLCLLWIGLVDAVGFHPYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFVLMISFVFCSLLNAGVGICGYLMFGDSIQSQFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKELQSYSVSVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGKISKLK
******************************************************************************************************************************************************************CSLAQSCLNGINVLCGVGLLATPYAIKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTGVVVLCLLWIGLVDAVGFHPYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFVLMISFVFCSLLNAGVGICGYLMFGDSIQSQFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKELQSYSVSVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGK*****
***********************************************************************************************************************************************************************SCLNGINVLCGVGLLATPYAIKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTGVVVLCLLWIGLVDAVGFHPYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFVLMISFVFCSLLNAGVGICGYLMFGDSIQSQFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKELQSYSVSVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGKI****
*************************************************PSDGIDIQPTWPQSYRQSMDIYSTVTSPSLGFLKPSSLSA***********************KPLISDLEKEEVLSPRVHWNVPSRSRLSNISD*****************KCSLAQSCLNGINVLCGVGLLATPYAIKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTGVVVLCLLWIGLVDAVGFHPYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFVLMISFVFCSLLNAGVGICGYLMFGDSIQSQFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKELQSYSVSVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGKISKLK
**********************************************************TWPQSYRQSMDIYSTVTSPSLGFLKPSSLSAL*GSMSSLYK*******************************************************DSLPPARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTGVVVLCLLWIGLVDAVGFHPYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFVLMISFVFCSLLNAGVGICGYLMFGDSIQSQFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKELQSYSVSVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGKI****
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MKMQDEDLGRERQAETLTDDEENQADSMGEIEDDSGSESSSTHSTPTRNPSDGIDIQPTWPQSYRQSMDIYSTVTSPSLGFLKPSSLSALSGSMSSLYKRSQPASYLESSLSKPLISDLEKEEVLSPRVHWNVPSRSRLSNISDMPRSRMSSISDSLPPARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTGVVVLCLLWIGLVDAVGFHPYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFVLMISFVFCSLLNAGVGICGYLMFGDSIQSQFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKELQSYSVSVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGKISKLK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query521 2.2.26 [Sep-21-2011]
P47082602 Vacuolar amino acid trans yes no 0.662 0.573 0.316 3e-46
P34579486 Vesicular GABA transporte yes no 0.656 0.703 0.253 5e-26
Q6DIV6518 Vesicular inhibitory amin yes no 0.631 0.635 0.251 9e-21
Q6PF45518 Vesicular inhibitory amin N/A no 0.621 0.625 0.249 3e-20
Q9H598525 Vesicular inhibitory amin yes no 0.604 0.6 0.243 2e-16
O35458525 Vesicular inhibitory amin yes no 0.604 0.6 0.243 2e-16
Q95KE2525 Vesicular inhibitory amin N/A no 0.604 0.6 0.243 2e-16
O35633525 Vesicular inhibitory amin yes no 0.604 0.6 0.243 3e-16
Q9FKS8446 Lysine histidine transpor no no 0.700 0.818 0.232 4e-16
Q6DEL1465 Putative sodium-coupled n no no 0.652 0.731 0.260 8e-16
>sp|P47082|AVT1_YEAST Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  186 bits (473), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/382 (31%), Positives = 202/382 (52%), Gaps = 37/382 (9%)

Query: 160 ARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLD 218
           A + +  Q+  N INVL G+GLLA P  +K  GW   L++L IF +  F T  LL  CLD
Sbjct: 205 AGQSTAPQTIFNSINVLIGIGLLALPLGLKYAGWVIGLTMLAIFALATFCTAELLSRCLD 264

Query: 219 SAPGLTTYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGG 278
           + P L +Y D+G AAFG  GR +++ +  L+L  + +  +I+  D+L +LFP  S  F  
Sbjct: 265 TDPTLISYADLGYAAFGTKGRALISALFTLDLLGSGVSLVILFGDSLNALFPQYSTTF-- 322

Query: 279 LHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTGVVVLCLLWIGLVDAVG--- 335
                   F I +  +V P V++  L++LS IS+ G+++T   VL +   GL  +     
Sbjct: 323 --------FKIVSFFIVTPPVFI-PLSVLSNISLLGILSTTGTVLVICCCGLYKSSSPGS 373

Query: 336 -FHPYGTAL---DLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFVLMISFVFCSL 391
             +P  T++   DL +L ++IGL    + GH+VFPN+ + M+ P KF   L  ++   S+
Sbjct: 374 LVNPMETSMWPIDLKHLCLSIGLLSACWGGHAVFPNLKTDMRHPDKFKDCLKTTYKITSV 433

Query: 392 LNAGVGICGYLMFGDSIQSQFTLN------FPKEFVASKVAIWTTVLIPMSKYAMTLTPI 445
            + G  + G+LMFG+ ++ + T N      +PK FV   ++   T+ IP++K  +   PI
Sbjct: 434 TDIGTAVIGFLMFGNLVKDEITKNVLLTEGYPK-FVYGLISALMTI-IPIAKTPLNARPI 491

Query: 446 ALSLEELMPSKELQ----------SYSVSVIIRTILAISTLVVALTLPYFGIVMSLIGSL 495
              L+ LM  + +           +  + V  R  + +  +++A+  P F  +++ +G+ 
Sbjct: 492 VSVLDVLMNVQHIDEAASAIKRRAAKGLQVFNRIFINVVFVLIAINFPEFDKIIAFLGAG 551

Query: 496 LAMLITLIFPCVFYLKILQGKI 517
           L   I LI PC FYL++ +  I
Sbjct: 552 LCFTICLILPCWFYLRLCKTTI 573
Required for the vacuolar uptake of large neutral amino acids including tyrosine, glutamine, asparagine, isoleucine and leucine. Requires ATP for function.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
>sp|P34579|UNC47_CAEEL Vesicular GABA transporter OS=Caenorhabditis elegans GN=unc-47 PE=1 SV=2 Back     alignment and function description
>sp|Q6DIV6|VIAAT_XENTR Vesicular inhibitory amino acid transporter OS=Xenopus tropicalis GN=slc32a1 PE=2 SV=1 Back     alignment and function description
>sp|Q6PF45|VIAAT_XENLA Vesicular inhibitory amino acid transporter OS=Xenopus laevis GN=slc32a1 PE=2 SV=1 Back     alignment and function description
>sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=1 SV=2 Back     alignment and function description
>sp|O35458|VIAAT_RAT Vesicular inhibitory amino acid transporter OS=Rattus norvegicus GN=Slc32a1 PE=1 SV=1 Back     alignment and function description
>sp|Q95KE2|VIAAT_MACFA Vesicular inhibitory amino acid transporter OS=Macaca fascicularis GN=SLC32A1 PE=2 SV=1 Back     alignment and function description
>sp|O35633|VIAAT_MOUSE Vesicular inhibitory amino acid transporter OS=Mus musculus GN=Slc32a1 PE=1 SV=3 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description
>sp|Q6DEL1|S38A7_DANRE Putative sodium-coupled neutral amino acid transporter 7 OS=Danio rerio GN=slc38a7 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query521
224140285532 amino acid transporter [Populus trichoca 0.952 0.932 0.566 1e-161
255581506531 amino acid transporter, putative [Ricinu 0.944 0.926 0.530 1e-150
297806151543 amino acid transporter family protein [A 0.963 0.924 0.531 1e-150
357443167550 Amino acid transporter [Medicago truncat 0.950 0.9 0.528 1e-149
225448988551 PREDICTED: vacuolar amino acid transport 0.965 0.912 0.520 1e-149
30679549550 Transmembrane amino acid transporter fam 0.965 0.914 0.514 1e-147
22326569526 Transmembrane amino acid transporter fam 0.932 0.923 0.511 1e-146
296085988566 unnamed protein product [Vitis vinifera] 0.965 0.888 0.505 1e-146
30687791550 transmembrane amino acid transporter-lik 0.942 0.892 0.506 1e-145
297806149525 amino acid transporter family protein [A 0.928 0.921 0.512 1e-145
>gi|224140285|ref|XP_002323513.1| amino acid transporter [Populus trichocarpa] gi|222868143|gb|EEF05274.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/519 (56%), Positives = 387/519 (74%), Gaps = 23/519 (4%)

Query: 5   DEDLGRERQAETLTDDEENQADSMGEIEDDSGSESSSTHSTPTRNPSDGIDIQPTWPQSY 64
           DEDLG +R+ +  TDDEENQ +   + + DS S+S  +    + N  D     P+WPQSY
Sbjct: 4   DEDLGPDREDQFQTDDEENQGERFCQSDSDSESDSMDSSQYLSNNSFD--VTTPSWPQSY 61

Query: 65  RQSMDIYSTVTSPSLGFLK-PSSLSALSGSMSSLYKRSQPASYLESSLSKPLISDLEKEE 123
           R+S+D+ +  T PS+  LK  SS++  + S++S+YKR Q  S ++SSLS P IS    E+
Sbjct: 62  RKSIDLLTGTTPPSVNILKGTSSMAGKTSSLTSVYKRRQ-GSEVDSSLSSPFIS----EQ 116

Query: 124 VLSPRV-HWNVPSRSRLSNISDMPRSRMSSISDSLPPARKCSLAQSCLNGINVLCGVGLL 182
            L   V  + +P +S  S           S+++  PP +K SLAQS LNG NVLCG+GLL
Sbjct: 117 SLGKEVPSFILPVKSSAS------SHSRFSVNELAPPDQKASLAQSILNGTNVLCGIGLL 170

Query: 183 ATPYAIKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLIV 242
             PYAIKEGGW SL +L +FG+I  YTGILL+ CL+S+PGL TYPD+GQAAFG+ GRL++
Sbjct: 171 TMPYAIKEGGWLSLIILSLFGVICCYTGILLKNCLESSPGLQTYPDIGQAAFGVGGRLVI 230

Query: 243 AIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLR 302
           +        A+ +EY+IMMSDNL++LFP+  M+F G+HLDCH+IFSITATL+VLPTVWLR
Sbjct: 231 S--------ASCVEYVIMMSDNLSTLFPNMYMDFAGIHLDCHQIFSITATLIVLPTVWLR 282

Query: 303 DLTLLSYISVGGVITTGVVVLCLLWIGLVDAVGFHPYGTALDLSNLPVTIGLYGFAYAGH 362
           DL+LLSY+SVGGV+ + +V LCLLW G++D +GFHP GTALDL+NLPV IG+YGF ++GH
Sbjct: 283 DLSLLSYLSVGGVVASIIVALCLLWTGVIDKIGFHPTGTALDLANLPVAIGIYGFGFSGH 342

Query: 363 SVFPNIYSSMQEPKKFPFVLMISFVFCSLLNAGVGICGYLMFGDSIQSQFTLNFPKEFVA 422
           SVFPNIYSSM+EP +FP VL+ SF+FC L+  G  ICG+LMFG+SI+SQ+TLN P +FV+
Sbjct: 343 SVFPNIYSSMKEPSRFPTVLITSFIFCWLMYTGAAICGFLMFGNSIESQYTLNMPAQFVS 402

Query: 423 SKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKELQSYSVSVIIRTILAISTLVVALTL 482
           SKVA+WT V+ PM+KYA+ + P+ALSLEEL+PS    SY VS+IIRTIL  STL VAL +
Sbjct: 403 SKVAVWTAVVNPMTKYALVMMPVALSLEELVPSGRFSSYGVSLIIRTILVTSTLAVALAV 462

Query: 483 PYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGKISKLK 521
           P+FG VM+LIGSLLAML+ +IFPCV YL IL  +++KL+
Sbjct: 463 PFFGFVMALIGSLLAMLVAVIFPCVCYLSILHERLTKLQ 501

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255581506|ref|XP_002531559.1| amino acid transporter, putative [Ricinus communis] gi|223528820|gb|EEF30825.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297806151|ref|XP_002870959.1| amino acid transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297316796|gb|EFH47218.1| amino acid transporter family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357443167|ref|XP_003591861.1| Amino acid transporter [Medicago truncatula] gi|355480909|gb|AES62112.1| Amino acid transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|225448988|ref|XP_002270908.1| PREDICTED: vacuolar amino acid transporter 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|30679549|ref|NP_195838.2| Transmembrane amino acid transporter family protein [Arabidopsis thaliana] gi|26449931|dbj|BAC42086.1| unknown protein [Arabidopsis thaliana] gi|332003058|gb|AED90441.1| Transmembrane amino acid transporter family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|22326569|ref|NP_195837.2| Transmembrane amino acid transporter family protein [Arabidopsis thaliana] gi|20856761|gb|AAM26683.1| AT5g02170/T7H20_220 [Arabidopsis thaliana] gi|29028738|gb|AAO64748.1| At5g02170/T7H20_220 [Arabidopsis thaliana] gi|332003056|gb|AED90439.1| Transmembrane amino acid transporter family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|296085988|emb|CBI31429.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|30687791|ref|NP_850312.1| transmembrane amino acid transporter-like protein [Arabidopsis thaliana] gi|330254544|gb|AEC09638.1| transmembrane amino acid transporter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297806149|ref|XP_002870958.1| amino acid transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297316795|gb|EFH47217.1| amino acid transporter family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query521
TAIR|locus:2185158550 AT5G02180 [Arabidopsis thalian 0.963 0.912 0.508 2.8e-137
TAIR|locus:2185143526 AT5G02170 [Arabidopsis thalian 0.857 0.849 0.517 2.2e-135
TAIR|locus:2056118550 AT2G39130 [Arabidopsis thalian 0.871 0.825 0.517 2.2e-128
TAIR|locus:2083529524 AT3G09330 "AT3G09330" [Arabido 0.857 0.853 0.523 9.9e-126
TAIR|locus:2083549528 AT3G09340 "AT3G09340" [Arabido 0.850 0.839 0.522 1.3e-125
TAIR|locus:2082652546 AT3G54830 "AT3G54830" [Arabido 0.821 0.783 0.5 5e-115
TAIR|locus:2063255536 AT2G41190 [Arabidopsis thalian 0.961 0.934 0.362 1e-91
TAIR|locus:2087012405 AT3G28960 "AT3G28960" [Arabido 0.683 0.879 0.389 5.5e-77
TAIR|locus:2150911423 AT5G15240 [Arabidopsis thalian 0.704 0.867 0.396 4.5e-75
TAIR|locus:2149045426 AT5G16740 [Arabidopsis thalian 0.677 0.828 0.382 6.5e-67
TAIR|locus:2185158 AT5G02180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1344 (478.2 bits), Expect = 2.8e-137, P = 2.8e-137
 Identities = 270/531 (50%), Positives = 361/531 (67%)

Query:     1 MKMQDEDLGRERQAETLTDDEENQAXXXXXXXXXXXXXXX------XTHSTP-TRNPSDG 53
             MK+ DE+   +R    LTDDEENQA                        S+P +R+ SD 
Sbjct:     1 MKL-DEEFLHDRDHSFLTDDEENQAALACSDDEHDGDDDGRRGGENSDSSSPLSRDRSDN 59

Query:    54 --IDIQ-PTWPQSYRQSMDIYSTVTSPSLGFLKPXXXXXXXXXXXXXYKRSQPASYLESS 110
                D+  P WPQSYRQSMD+ + +T PS+ F+ P              ++S     L SS
Sbjct:    60 NLSDVSNPPWPQSYRQSMDLLTGMTPPSVSFM-PQSSSRRLASSFQKKQQSSFCDSLSSS 118

Query:   111 LSKPLISDL--EKEEVLSPRVHWNVPSRSRLSNISDMPRSRMSSISDSLPPARKCSLAQS 168
              SKPL+S    +KEE + P    N  S+ +LS ++D+P          LP    CS +QS
Sbjct:   119 SSKPLLSQPVPDKEETILPV---NPQSQLKLS-VTDLP----------LPEPNLCSFSQS 164

Query:   169 CLNGINVLCGVGLLATPYAIKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPD 228
              LNG NVLCG+GL+  PYAIKE GW  L +L  FG+I  YTG+L++ CL+S+PG+ TYPD
Sbjct:   165 VLNGTNVLCGLGLITMPYAIKESGWLGLPILLFFGVITCYTGVLMKRCLESSPGIQTYPD 224

Query:   229 VGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFG-GLHLDCHKIF 287
             +GQAAFGITGR I++I+LY+EL+AA +EY+IMMSDNL+ LFP+ S++   G+ LD  +IF
Sbjct:   225 IGQAAFGITGRFIISILLYVELYAACVEYIIMMSDNLSGLFPNVSLSIASGISLDSPQIF 284

Query:   288 SITATLVVLPTVWLRDLTLLSYISXXXXXXXXXXXLCLLWIGLVDAVGFHPYGTALDLSN 347
             +I  TL+VLPTVWL+DL+LLSY+S           +CL W+G VD +GFH  G   DLSN
Sbjct:   285 AILTTLLVLPTVWLKDLSLLSYLSVGGVLASILLGICLFWVGAVDGIGFHATGRVFDLSN 344

Query:   348 LPVTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFVLMISFVFCSLLNAGVGICGYLMFGDS 407
             LPVTIG++GF Y+GHSVFPNIYSSM++P +FP VL+I F FC++L   V +CGY MFG++
Sbjct:   345 LPVTIGIFGFGYSGHSVFPNIYSSMKDPSRFPLVLVICFSFCTVLYIAVAVCGYTMFGEA 404

Query:   408 IQSQFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKELQSYSVSVII 467
             ++SQFTLN PK F  SKVA+WT V+ PM+KYA+T+TPI +SLEEL+P+ +++S  VS++ 
Sbjct:   405 VESQFTLNMPKHFFPSKVAVWTAVITPMTKYALTITPIVMSLEELIPTAKMRSRGVSILF 464

Query:   468 RTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGKIS 518
             RT+L  STLVVAL++P+F IV +LIGS LAML+ LIFPC+ YL IL+GK+S
Sbjct:   465 RTMLVTSTLVVALSVPFFAIVAALIGSFLAMLVALIFPCLCYLSILKGKLS 515
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0009507 "chloroplast" evidence=IDA
TAIR|locus:2185143 AT5G02170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056118 AT2G39130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083529 AT3G09330 "AT3G09330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083549 AT3G09340 "AT3G09340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082652 AT3G54830 "AT3G54830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063255 AT2G41190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087012 AT3G28960 "AT3G28960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150911 AT5G15240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149045 AT5G16740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00160948
amino acid transporter (532 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query521
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 2e-54
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 2e-24
TIGR00837381 TIGR00837, araaP, aromatic amino acid transport pr 4e-08
PLN03074473 PLN03074, PLN03074, auxin influx permease; Provisi 5e-06
pfam03222393 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine perme 5e-06
PTZ00206467 PTZ00206, PTZ00206, amino acid transporter; Provis 1e-05
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 5e-04
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  187 bits (478), Expect = 2e-54
 Identities = 109/378 (28%), Positives = 185/378 (48%), Gaps = 30/378 (7%)

Query: 167 QSCLNGINVLCGVGLLATPYAIKEGGW-SSLSLLFIFGIIAFYTGILLQECLDSAPGLT- 224
           Q+  N I  + G G+L+ PYA K+ GW   L LL I G+I+ YT  LL +C      +  
Sbjct: 7   QAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYVDKVKG 66

Query: 225 ----TYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLH 280
               +Y D+G   FG  G+L++   + + LF   I YLI   DNL ++F     +F    
Sbjct: 67  KRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFD----SFFDTC 122

Query: 281 LDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTGVVVLCLLWIGLVDAVGFH--- 337
                 F I   L+ +P  ++ +L+ LS +S+   +     +  ++ +  V  +G     
Sbjct: 123 HISLVYFIIIFGLIFIPLSFIPNLSALSILSL---VAAVSSLYIVILVLSVAELGVLTAQ 179

Query: 338 -----PYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKKF---PFVLMISFVFC 389
                   T + L+ L + IG+  FA+ GH+V   I ++M+ P KF     VL+ + +  
Sbjct: 180 GVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAIIIV 239

Query: 390 SLLNAGVGICGYLMFGDSIQSQFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSL 449
           ++L   VG+ GYL FG++++    LN PK      +A    VL  +  Y +   PI   +
Sbjct: 240 TVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFPIRQIV 299

Query: 450 EELMPSKELQ------SYSVSVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLI 503
           E L+  K         S  + V+IR+ L + T ++A+++P+ G  +SL+G+     +T I
Sbjct: 300 ENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGAPLTFI 359

Query: 504 FPCVFYLKILQGKISKLK 521
            P +F+LK+ + K   L+
Sbjct: 360 LPPLFHLKLKKTKKKSLE 377

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein Back     alignment and domain information
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional Back     alignment and domain information
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family Back     alignment and domain information
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 521
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.97
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.97
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.93
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.93
PRK09664415 tryptophan permease TnaB; Provisional 99.91
PRK10483414 tryptophan permease; Provisional 99.91
PRK15132403 tyrosine transporter TyrP; Provisional 99.9
TIGR00814397 stp serine transporter. The HAAAP family includes 99.85
PRK13629443 threonine/serine transporter TdcC; Provisional 99.84
PRK10655438 potE putrescine transporter; Provisional 99.79
TIGR00930 953 2a30 K-Cl cotransporter. 99.79
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.79
PRK15049499 L-asparagine permease; Provisional 99.78
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.78
PRK10644445 arginine:agmatin antiporter; Provisional 99.78
PRK11021410 putative transporter; Provisional 99.77
PRK10249458 phenylalanine transporter; Provisional 99.77
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.76
PRK10746461 putative transport protein YifK; Provisional 99.76
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.76
TIGR00911501 2A0308 L-type amino acid transporter. 99.76
TIGR00909429 2A0306 amino acid transporter. 99.76
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.75
PRK11387471 S-methylmethionine transporter; Provisional 99.75
PRK10580457 proY putative proline-specific permease; Provision 99.73
PRK10238456 aromatic amino acid transporter; Provisional 99.73
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.73
PRK10836 489 lysine transporter; Provisional 99.73
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.72
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.72
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.7
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.69
TIGR00913 478 2A0310 amino acid permease (yeast). 99.69
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.68
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.64
COG0531466 PotE Amino acid transporters [Amino acid transport 99.55
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.54
KOG1286 554 consensus Amino acid transporters [Amino acid tran 99.53
COG0833 541 LysP Amino acid transporters [Amino acid transport 99.51
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.49
PRK15238 496 inner membrane transporter YjeM; Provisional 99.49
TIGR03813 474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.45
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.43
PF03845320 Spore_permease: Spore germination protein; InterPr 99.4
PF00324 478 AA_permease: Amino acid permease; InterPro: IPR004 99.32
KOG3832319 consensus Predicted amino acid transporter [Genera 99.07
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.9
COG3949349 Uncharacterized membrane protein [Function unknown 98.9
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.65
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.56
PRK12488 549 acetate permease; Provisional 98.56
PRK11375484 allantoin permease; Provisional 98.51
TIGR00813407 sss transporter, SSS family. have different number 98.5
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.5
COG1457442 CodB Purine-cytosine permease and related proteins 98.48
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.46
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.42
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 98.37
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.37
PRK09395 551 actP acetate permease; Provisional 98.33
COG0591 493 PutP Na+/proline symporter [Amino acid transport a 98.29
PRK15419 502 proline:sodium symporter PutP; Provisional 98.2
PRK11017404 codB cytosine permease; Provisional 98.17
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.09
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 98.06
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 98.05
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 98.04
KOG1288 945 consensus Amino acid transporters [Amino acid tran 98.0
PRK10484 523 putative transporter; Provisional 97.94
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.89
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.73
COG0733439 Na+-dependent transporters of the SNF family [Gene 97.19
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 97.09
PHA02764399 hypothetical protein; Provisional 97.08
PF00209 523 SNF: Sodium:neurotransmitter symporter family; Int 96.7
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 96.63
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 96.59
PRK00701439 manganese transport protein MntH; Reviewed 96.37
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 96.37
PF01566358 Nramp: Natural resistance-associated macrophage pr 95.73
KOG2466 572 consensus Uridine permease/thiamine transporter/al 95.4
PRK15015 701 carbon starvation protein A; Provisional 95.36
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 95.19
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 94.79
COG1966 575 CstA Carbon starvation protein, predicted membrane 94.76
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 94.25
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 93.82
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 93.08
COG4147 529 DhlC Predicted symporter [General function predict 93.01
PRK09928 679 choline transport protein BetT; Provisional 92.47
KOG3659 629 consensus Sodium-neurotransmitter symporter [Signa 92.44
KOG3660 629 consensus Sodium-neurotransmitter symporter [Signa 91.35
PRK15433439 branched-chain amino acid transport system 2 carri 90.64
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 88.44
KOG1289550 consensus Amino acid transporters [Amino acid tran 86.37
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 85.17
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 81.63
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-50  Score=415.61  Aligned_cols=357  Identities=37%  Similarity=0.662  Sum_probs=319.4

Q ss_pred             CCCCCCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCC-----hHHHHH
Q 044089          158 PPARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTT-----YPDVGQ  231 (521)
Q Consensus       158 ~~~~~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~s-----Y~~i~~  231 (521)
                      ..+++.|+++++++++|.++|.|+|++|||++++||+ |++++++++++++||+.+|.+|.+.++....     |+|+++
T Consensus        33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~  112 (437)
T KOG1303|consen   33 TPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQ  112 (437)
T ss_pred             ccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHH
Confidence            4467799999999999999999999999999999999 8999999999999999999999987776655     999999


Q ss_pred             HHhChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHH
Q 044089          232 AAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYIS  311 (521)
Q Consensus       232 ~~fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s  311 (521)
                      ++||++++.++.+++++..+++|++|++..++++..+++....+..  ..+ ...+.++++++++|++++||++.+++.+
T Consensus       113 ~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~--~l~-~~~f~iif~~i~~~~s~lp~~~~l~~~S  189 (437)
T KOG1303|consen  113 AAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN--SLD-KQYFIIIFGLIVLPLSQLPNFHSLSYLS  189 (437)
T ss_pred             HHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--ccc-ceehhhhHHHHHHHHHHCCCcchhHHHH
Confidence            9999999999999999999999999999999999999998765422  344 5678889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhheecccccccCCC-CcccCCCch---hHHHHHHhhhcccccchhhhhhhccCCCChhhHHHHHHH
Q 044089          312 VGGVITTGVVVLCLLWIGLVDAVGFHPY-GTALDLSNL---PVTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFVLMISFV  387 (521)
Q Consensus       312 ~~~~~~~i~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~---~~a~~~~~faf~g~~~~~~i~~emk~p~k~~~~~~~a~~  387 (521)
                      .++.++++....++++.+..++.+.+.+ .....+...   ++++|++.|+|.||.++|+|+..||+|++++|++.+++.
T Consensus       190 ~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis~~  269 (437)
T KOG1303|consen  190 LVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLISYI  269 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHHHH
Confidence            9999999999999999988887665332 333333333   599999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHccCCccchhccCCCchhHHHhHHHHHHHHhhhhhccchhchHHHHHHhhcCCCcc----ccchh
Q 044089          388 FCSLLNAGVGICGYLMFGDSIQSQFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKEL----QSYSV  463 (521)
Q Consensus       388 i~~~~Y~~vg~~gy~~fG~~~~~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~le~~l~~~~~----~~~~~  463 (521)
                      +++++|+.++++||++|||++.++++.|++........+.++..+|++.++.....|+.+..|+....+..    +....
T Consensus       270 ~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~  349 (437)
T KOG1303|consen  270 IVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVL  349 (437)
T ss_pred             HHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCccccccccce
Confidence            99999999999999999999999999999533444566778888999999999999999999998875532    35669


Q ss_pred             hhHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCC
Q 044089          464 SVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGKI  517 (521)
Q Consensus       464 ~~~~~~~~~~~~~~va~~vp~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~~~  517 (521)
                      |.+.|+.+++.++++|+.+|+|+.+++++|++...++++++|+++|++++|++.
T Consensus       350 R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~  403 (437)
T KOG1303|consen  350 RLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKR  403 (437)
T ss_pred             eeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            999999999999999999999999999999999999999999999999877654

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query521
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 5e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 69.9 bits (170), Expect = 1e-12
 Identities = 97/592 (16%), Positives = 167/592 (28%), Gaps = 170/592 (28%)

Query: 1   MKMQDEDLGRERQAETLTDDEENQADS-MGEIEDDSGSESSSTHSTPTRNPSDGIDIQPT 59
           +  +D   G  R   TL   +E      + E+   +     S   T  R PS        
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR---- 110

Query: 60  WPQSYRQSMDIYSTVTSPSLGFLK-----PSSLSALSGSMSSLYKRSQPASYL------- 107
               Y +  D           F K           L  ++  L    +PA  +       
Sbjct: 111 ---MYIEQRDRLYNDNQV---FAKYNVSRLQPYLKLRQALLEL----RPAKNVLIDGVLG 160

Query: 108 --ESSLSKPLISDLEKEEVLSPRVHW-NV---------------------PSRSRLSNIS 143
             ++ ++  +    + +  +  ++ W N+                     P+ +  S+ S
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 144 DMPRSRMSSISDSL------PPARKCSL------AQSCLNGINVLCGVGLLATPY----- 186
              + R+ SI   L       P   C L           N  N+ C + LL T +     
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTD 279

Query: 187 AIKEGGWSSLSL-LFIFGIIAFYTGILLQECLDSAPG------LTTYPDVGQAAFGITGR 239
            +     + +SL      +       LL + LD  P       LTT P            
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP------------ 327

Query: 240 LIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFS-ITATLVVLPT 298
                   L + A        + D        T  N+   H++C K+ + I ++L VL  
Sbjct: 328 ------RRLSIIAE------SIRD-----GLATWDNW--KHVNCDKLTTIIESSLNVLEP 368

Query: 299 VWLRDLTLLSYISVG----GV-ITTGVVVLCLLWIGLVD------AVGFHPYGTALDLSN 347
              R +    +  +        I T +  L L+W  ++           H Y   ++   
Sbjct: 369 AEYRKM----FDRLSVFPPSAHIPTIL--LSLIWFDVIKSDVMVVVNKLHKYS-LVEKQP 421

Query: 348 LPVTIGLYGFA----------YAGHSVFPNIYSSMQEPKKFP----FVLMISFVFCSLLN 393
              TI +              YA H    + Y     PK F         +   F S + 
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHY---NIPKTFDSDDLIPPYLDQYFYSHI- 477

Query: 394 AGVGICGYLMFGDSIQSQFTLNFPK-----EFVASKV----AIWTT------VLIPMSKY 438
                 G+ +       + TL F        F+  K+      W         L  +  Y
Sbjct: 478 ------GHHLKNIEHPERMTL-FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530

Query: 439 AMTLTPIALSLEELMPSKE--LQSYSVSVIIRTILAISTLVVALTLPYFGIV 488
              +       E L+ +    L     ++I      +  L +AL      I 
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL--LRIALMAEDEAIF 580
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query521
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.84
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.76
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 99.66
2jln_A 501 MHP1; hydantoin, transporter, membrane protein, nu 98.79
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 98.31
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.84
2a65_A 519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 96.24
4ain_A539 Glycine betaine transporter BETP; membrane protein 84.39
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.84  E-value=1.5e-18  Score=182.42  Aligned_cols=349  Identities=12%  Similarity=0.124  Sum_probs=213.2

Q ss_pred             CCCCCCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChh
Q 044089          158 PPARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGIT  237 (521)
Q Consensus       158 ~~~~~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~  237 (521)
                      +.+|+.+.++.++..+++++|+|++.+|..+.++|..+++.+++.+++.......+.+...+.|....+.+..++.+||+
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~   84 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPF   84 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHH
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCCh
Confidence            34678999999999999999999999999888888767777777777777777777777777777667888889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHHH
Q 044089          238 GRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVIT  317 (521)
Q Consensus       238 ~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~~  317 (521)
                      .+++..|..++........+....++++..+++....+     + ....+.++..+++..+ ..+..+...+++.+..+.
T Consensus        85 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~i-n~~g~~~~~~~~~~~~~~  157 (445)
T 3l1l_A           85 LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDP-----W-VLTITCVVVLWIFVLL-NIVGPKMITRVQAVATVL  157 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSH-----H-HHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccccc-----H-HHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHH
Confidence            99999999888777777778888888887776643210     0 0111222222222222 223555566655554444


Q ss_pred             HHHHHHhhhheeccc-cc-ccCCC---CcccCCCchhHHHHHHhhhcccccchhhhhhhccCCC-ChhhHHHHHHHHHHH
Q 044089          318 TGVVVLCLLWIGLVD-AV-GFHPY---GTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPK-KFPFVLMISFVFCSL  391 (521)
Q Consensus       318 ~i~~~~~v~~~~~~~-~~-~~~~~---~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~-k~~~~~~~a~~i~~~  391 (521)
                      .++.++.++..+... +. .+...   ....++.++..++....|+|.|++.+..+.+|+|||+ +.||++..+..++++
T Consensus       158 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~  237 (445)
T 3l1l_A          158 ALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAV  237 (445)
T ss_dssp             HHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHH
Confidence            443333333222211 11 11111   1112356788999999999999999999999999995 599999999999999


Q ss_pred             HHHHHHHHHHhHccCCccchhccCCCchhH--------HHhHHHHHHHHhhhhh-----ccchhchHHHHHHhhcCCCcc
Q 044089          392 LNAGVGICGYLMFGDSIQSQFTLNFPKEFV--------ASKVAIWTTVLIPMSK-----YAMTLTPIALSLEELMPSKEL  458 (521)
Q Consensus       392 ~Y~~vg~~gy~~fG~~~~~~i~~n~p~~~~--------~~~i~~~~~~i~~~~s-----~pl~~~p~~~~le~~l~~~~~  458 (521)
                      +|+++.+......+.+...+.  ..|-...        ...+..+...+..+.+     +...+.....+.++.+|+.-.
T Consensus       238 ~y~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~  315 (445)
T 3l1l_A          238 CYVLSTTAIMGMIPNAALRVS--ASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFA  315 (445)
T ss_dssp             HHHHHHHHHHHHSCTTTSCST--TCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGG
T ss_pred             HHHHHHHHHHhcCCHHHHhcc--CcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH
Confidence            999999988887765432110  1111111        1111111112222222     222234445667788885411


Q ss_pred             ccchhhhHHHHHHHHHH--HHHHhh--c----ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCC
Q 044089          459 QSYSVSVIIRTILAIST--LVVALT--L----PYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGKI  517 (521)
Q Consensus       459 ~~~~~~~~~~~~~~~~~--~~va~~--v----p~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~~~  517 (521)
                      +.+.++...+..++...  .++.+.  .    ..+..+.++.+  ....+.|+++++.+++.+|++.
T Consensus       316 ~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          316 RVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF  380 (445)
T ss_dssp             CCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred             hcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence            11122333333333222  122221  1    23566666655  3456788899998888877653
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query521
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 97.73
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.73  E-value=0.026  Score=57.10  Aligned_cols=103  Identities=17%  Similarity=0.171  Sum_probs=65.6

Q ss_pred             CchHHHHHHHHHhhhhhh-hhHhHHHH-HhhcHH----HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhCh
Q 044089          163 CSLAQSCLNGINVLCGVG-LLATPYAI-KEGGWS----SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGI  236 (521)
Q Consensus       163 ~s~~~~v~~li~~iiG~G-ILslP~a~-~~~G~~----g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~  236 (521)
                      .|..+-++..++..+|-| +-=.||-. +++|..    =+++++++|+=..+.-..++|.. +.+....+..+.....+.
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~-~~g~i~~~~~i~~~~~~~   83 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYG-GAQGHGTTPAIFYLLWRN   83 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHH-HTTTCCSHHHHHHHHSCS
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCcccHHHHHHHHhccC
Confidence            366788999999999999 77799974 677743    34444455555556666777754 566778888877766553


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 044089          237 TGRLIVAIVLYLELFAASIEYLIMMSDNLA  266 (521)
Q Consensus       237 ~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~  266 (521)
                      +.-..+.+..++..+..++-|.++.+-.+.
T Consensus        84 ~~~~giG~~~~~~~~~i~~yy~vi~~w~l~  113 (509)
T d2a65a1          84 RFAKILGVFGLWIPLVVAIYYVYIESWTLG  113 (509)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322333444444444455555555555443