Citrus Sinensis ID: 044114


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-
MDTRKHEHEGYGVSIDMEKLADSLSGELESLHPLARECSIYRVPEATRCSHPSHFTPRMVSIGPFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFVGFIKAREAELRNCYAETIHLGSDEFIKMVLVDAVFLIELFLKYYQPNLRTNEDPILGKLFLYNDVTHEILLLENQLPLFILNGLFNLAKTETFEANLYEEISFMTITCFWFRDDIVGYLPIQENLLEINFSKAKHFVDLLILCLQPSQSRAVFALKDLNIPSVMELHQAGVKFKRGSSKDLLDIKFNEGILEIPFLTVYDPTERLYRNVLAFEMMHSYTKYLNDYIIMMNYLVSTSKDAELLLQNEIIGLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKLPWHKWKATLKQNYFNTPWASISVIAAVILLLLTSIQTVCSLIAL
ccccccccccccEEEEHHHHHHHHHHHHHHccccccccEEEEccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHcccccccccHHHHHHcccccccccccccccccccHHHHHHccccEEEccccccccEEEcccEEEccEEEEEccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccccccccEEEEHHHHHHHHHHHHHHccccccccEEEEccHHHHHccHHccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccHHHHHHHcHHHccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHcccEEEEccccccEEEEEcccEEEccEEEEcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHcccEEEccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccc
mdtrkhehegygvsiDMEKLADSLSGeleslhplarecsiyrvpeatrcshpshftprmvsigpfhhgKEELKAMEEHKKRYLKCFLQRTKVRIASFVGFIKAREAELRNCYAETIHLGSDEFIKMVLVDAVFLIELFLKYyqpnlrtnedpilgklflyndvTHEILLLENQLPLFILNGlfnlaktetfEANLYEEISFMTItcfwfrddivgylpiQENLLEINFSKAKHFVDLLILclqpsqsravfalkdlnipsvMELHQAGVkfkrgsskdlldikfnegileipfltvydpteRLYRNVLAFEMMHSYTKYLNDYIIMMNYLVSTSKDAELLLQNEIiglgnteavPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKLPWHKWKATLKqnyfntpwaSISVIAAVILLLLTSIQTVCSLIAL
mdtrkhehegygvsidMEKLADSLSGELESLHPLARECSIYRVPEATRCSHPSHFTPRMVSIGPFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFVGFIKAREAELRNCYAETIHLGSDEFIKMVLVDAVFLIELFLKYYQPNLRTNEDPILGKLFLYNDVTHEILLLENQLPLFILNGLFNLAKTETFEANLYEEISFMTITCFWFRDDIVGYLPIQENLLEINFSKAKHFVDLLILCLQPSQSRAVFALKDLNIPSVMELHQAGVKFKRGSSKDLLDIKFNegileipfltvydptERLYRNVLAFEMMHSYTKYLNDYIIMMNYLVSTSKDAELLLQNEIIGLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKLPWHKWKATLKQNYFNTPWASISVIAAVILLLLTSIQTVCSLIAL
MDTRKHEHEGYGVSIDMEKLADSLSGELESLHPLARECSIYRVPEATRCSHPSHFTPRMVSIGPFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFVGFIKAREAELRNCYAETIHLGSDEFIKMVLVDAVFLIELFLKYYQPNLRTNEDPILGKLFLYNDVTHEILLLENQLPLFILNGLFNLAKTETFEANLYEEISFMTITCFWFRDDIVGYLPIQENLLEINFSKAKHFVDLLILCLQPSQSRAVFALKDLNIPSVMELHQAGVKFKRGSSKDLLDIKFNEGILEIPFLTVYDPTERLYRNVLAFEMMHSYTKYLNDYIIMMNYLVSTSKDAELLLQNEIIGLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKLPWHKWKATLKQNYFNTPWasisviaavilllltsiQTVCSLIAL
********************************PLARECSIYRVPEATRCSH**HFTPRMVSIGPFH***********HKKRYLKCFLQRTKVRIASFVGFIKAREAELRNCYAETIHLGSDEFIKMVLVDAVFLIELFLKYYQPNLRTNEDPILGKLFLYNDVTHEILLLENQLPLFILNGLFNLAKTETFEANLYEEISFMTITCFWFRDDIVGYLPIQENLLEINFSKAKHFVDLLILCLQPSQSRAVFALKDLNIPSVMELHQAGVKFKRGSSKDLLDIKFNEGILEIPFLTVYDPTERLYRNVLAFEMMHSYTKYLNDYIIMMNYLVSTSKDAELLLQNEIIGLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKLPWHKWKATLKQNYFNTPWASISVIAAVILLLLTSIQTVCSLI**
****************MEKLADSL*********LARECSIYRVPEATRCSHPSHFTPRMVSIGPFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFVGFIKAREAELRNCYAETIHLGSDEFIKMVLVDAVFLIELFLKYYQPNLRTNEDPILGKLFLYNDVTHEILLLENQLPLFILNGLFNLAKTETFEANLYEEISFMTITCFWFRDDIVGYLPIQENLLEINFSKAKHFVDLLILCLQPSQS**VFALKDLNIPSVMELHQAGVKFKRGSSKDLLDIKFNEGILEIPFLTVYDPTERLYRNVLAFEMMHSYTKYLNDYIIMMNYLVSTSKDAELLLQNEIIGLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKLPWHKWKATLKQNYFNTPWASISVIAAVILLLLTSIQTVCSLIAL
**********YGVSIDMEKLADSLSGELESLHPLARECSIYRVPEATRCSHPSHFTPRMVSIGPFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFVGFIKAREAELRNCYAETIHLGSDEFIKMVLVDAVFLIELFLKYYQPNLRTNEDPILGKLFLYNDVTHEILLLENQLPLFILNGLFNLAKTETFEANLYEEISFMTITCFWFRDDIVGYLPIQENLLEINFSKAKHFVDLLILCLQPSQSRAVFALKDLNIPSVMELHQAGVKFKRGSSKDLLDIKFNEGILEIPFLTVYDPTERLYRNVLAFEMMHSYTKYLNDYIIMMNYLVSTSKDAELLLQNEIIGLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKLPWHKWKATLKQNYFNTPWASISVIAAVILLLLTSIQTVCSLIAL
**********YGVSIDMEKLADSLSGELESLHPLARECSIYRVPEATRCSHPSHFTPRMVSIGPFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFVGFIKAREAELRNCYAETIHLGSDEFIKMVLVDAVFLIELFLKYYQPNLRTNEDPILGKLFLYNDVTHEILLLENQLPLFILNGLFNLAKTETFEANLYEEISFMTITCFWFRDDIVGYLPIQENLLEINFSKAKHFVDLLILCLQPSQSRAVFALKDLNIPSVMELHQAGVKFKRGSSKDLLDIKFNEGILEIPFLTVYDPTERLYRNVLAFEMMHSYTKYLNDYIIMMNYLVSTSKDAELLLQNEIIGLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKLPWHKWKATLKQNYFNTPWASISVIAAVILLLLTSIQTVCSLIAL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
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MDTRKHEHEGYGVSIDMEKLADSLSGELESLHPLARECSIYRVPEATRCSHPSHFTPRMVSIGPFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFVGFIKAREAELRNCYAETIHLGSDEFIKMVLVDAVFLIELFLKYYQPNLRTNEDPILGKLFLYNDVTHEILLLENQLPLFILNGLFNLAKTETFEANLYEEISFMTITCFWFRDDIVGYLPIQENLLEINFSKAKHFVDLLILCLQPSQSRAVFALKDLNIPSVMELHQAGVKFKRGSSKDLLDIKFNEGILEIPFLTVYDPTERLYRNVLAFEMMHSYTKYLNDYIIMMNYLVSTSKDAELLLQNEIIGLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKLPWHKWKATLKQNYFNTPWASISVIAAVILLLLTSIQTVCSLIAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query431 2.2.26 [Sep-21-2011]
Q9SD53476 UPF0481 protein At3g47200 no no 0.877 0.794 0.266 6e-34
P0C897529 Putative UPF0481 protein no no 0.526 0.429 0.311 1e-18
>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1 Back     alignment and function desciption
 Score =  145 bits (366), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 114/427 (26%), Positives = 202/427 (47%), Gaps = 49/427 (11%)

Query: 38  CSIYRVPEATRCSHPSHFTPRMVSIGPFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASF 97
           C I+RVPE+    +P  + P++VSIGP+H+G++ L+ +++HK R L+ FL   K +    
Sbjct: 46  CCIFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVEE 105

Query: 98  VGFIKAR---EAELRNCYAETIHLGSDEFIKMVLVDAVFLIELFLKYYQPNLRTNEDPIL 154
              +KA    E ++R  Y+E +  G D    MVL D  F++ +FL     N+  +EDPI 
Sbjct: 106 NVLVKAVVDLEDKIRKSYSEELKTGHDLMFMMVL-DGCFILMVFL-IMSGNIELSEDPIF 163

Query: 155 GKLFLYNDVTHEILLLENQLPLFILNGLFNLAKTETFEANLYEEISFMTITCFWFRDDI- 213
              +L + +  ++LLLENQ+P F+L  L+  +K     ++    I+F      +F++ I 
Sbjct: 164 SIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGV--SSDLNRIAF-----HFFKNPID 216

Query: 214 --VGYLPIQENLLEINFSKAKHFVDLLILCLQPSQSRAVFAL-----------KDLNIPS 260
               Y     N       KAKH +DL+     P+ S +  A            K  N+PS
Sbjct: 217 KEGSYWEKHRNY------KAKHLLDLIRETFLPNTSESDKASSPHVQVQLHEGKSGNVPS 270

Query: 261 V-----------MELHQAGVKFKRGSSKD--LLDIKFNEGILEIPFLTVYDPTERLYRNV 307
           V             L   G+KF+   SK+  +L+++  +  L+IP L         + N 
Sbjct: 271 VDSKAVPLILSAKRLRLQGIKFRLRRSKEDSILNVRLKKNKLQIPQLRFDGFISSFFLNC 330

Query: 308 LAFEMMHS-YTKYLNDYIIMMNYLVSTSKDAELLLQNEII---GLGNTEAVPTVFRNLDK 363
           +AFE  ++  +  +  YI+ M  L++  +D   L  +++I     G+   V   F+ + K
Sbjct: 331 VAFEQFYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKTISK 390

Query: 364 GCAISYSYFQYSGVVADLQAYCKLPWHKWKATLKQNYFNTPWASISVIAAVILLLLTSIQ 423
                      + V   +  Y K  ++   A  +  +F +PW  +S  A + ++LLT +Q
Sbjct: 391 DVVFEVDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPWTFLSSCAVLFVILLTMLQ 450

Query: 424 TVCSLIA 430
           +  ++++
Sbjct: 451 STVAILS 457





Arabidopsis thaliana (taxid: 3702)
>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query431
224143104410 predicted protein [Populus trichocarpa] 0.941 0.990 0.485 1e-101
255544798410 conserved hypothetical protein [Ricinus 0.937 0.985 0.485 1e-99
224075744436 predicted protein [Populus trichocarpa] 0.972 0.961 0.467 3e-96
224075748436 predicted protein [Populus trichocarpa] 0.974 0.963 0.470 4e-94
224111146436 predicted protein [Populus trichocarpa] 0.974 0.963 0.466 5e-94
224098244439 predicted protein [Populus trichocarpa] 0.988 0.970 0.449 8e-94
224144479438 predicted protein [Populus trichocarpa] 0.960 0.945 0.460 3e-93
255569108421 conserved hypothetical protein [Ricinus 0.939 0.961 0.440 3e-92
255548976439 conserved hypothetical protein [Ricinus 0.951 0.933 0.439 1e-91
255544800437 conserved hypothetical protein [Ricinus 0.979 0.965 0.440 9e-91
>gi|224143104|ref|XP_002324850.1| predicted protein [Populus trichocarpa] gi|222866284|gb|EEF03415.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/412 (48%), Positives = 278/412 (67%), Gaps = 6/412 (1%)

Query: 24  LSGELESLHPLARECSIYRVPEATRCSHPSHFTPRMVSIGPFHHGKEELKAMEEHKKRYL 83
           + GEL+SL  L+ +C IY VP+     +   +TP++VSIGP HHGK EL+ MEEHKKRYL
Sbjct: 1   MRGELDSLPVLSSKCCIYTVPKRLHHLNEKAYTPQLVSIGPLHHGKPELRPMEEHKKRYL 60

Query: 84  KCFLQRTKVRIASFVGFIKAREAELRNCYAETIHLGSDEFIKMVLVDAVFLIELFLKY-Y 142
           + FLQRTK+ +  ++  I+  E +LR+CYAETI   SDEFIKM+LVDA F+IE+ L+Y +
Sbjct: 61  QDFLQRTKLSLVDYLKVIEKNEKKLRDCYAETIEFSSDEFIKMILVDAAFIIEVLLRYHF 120

Query: 143 QPNLRTNE-DPILGKLFLYNDVTHEILLLENQLPLFILNGLFNLAKTETFEANLYEEISF 201
           +P  +  E D +  K +   D+  ++ LLENQLP FIL  LF+ A+  T  +   + +S 
Sbjct: 121 KPMRKEKENDRVYNKPWAIQDIRKDMWLLENQLPFFILEDLFDPARI-TLPSGSNQMLS- 178

Query: 202 MTITCFWFRDDIVGYLPIQENLLEINFSKAKHFVDLLILCLQPSQSRAVFALKDLNIPSV 261
           +T   + F  D+     ++E   +    K +H VD L +C QP QS++   LK L IPS 
Sbjct: 179 ITKLAYEFSKDLWDLEEMEEKSQKNKSPKVQHLVDFLWICHQPPQSKSKKKLKTLGIPSA 238

Query: 262 MELHQAGVKFKRGSSKDLLDIKFNEGILEIPFLTVYDPTERLYRNVLAFEMMHSYTKYLN 321
            ELHQAGVKFK GSSK+L DIKF  GILEIP L +   TE L+RN+LAFE  H    Y+N
Sbjct: 239 TELHQAGVKFKLGSSKNLFDIKFKNGILEIPRLEIVGATELLFRNLLAFEQCHCSKNYIN 298

Query: 322 DYIIMMNYLVSTSKDAELLLQNEII--GLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVA 379
           DY+I++N+LV+T+KD ELL+++ I+   L + E +  +F  L K   +   +F +SG+V 
Sbjct: 299 DYVIIINHLVNTAKDVELLVKDGIVENWLWDDEGMSALFHGLVKETFVIVDHFYFSGLVE 358

Query: 380 DLQAYCKLPWHKWKATLKQNYFNTPWASISVIAAVILLLLTSIQTVCSLIAL 431
           +L AYC+ PWHKW+ATLKQ+YFN PW+ IS IAAVILL+LT+IQ VCS++++
Sbjct: 359 ELNAYCRKPWHKWQATLKQHYFNNPWSIISFIAAVILLVLTTIQAVCSILSV 410




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544798|ref|XP_002513460.1| conserved hypothetical protein [Ricinus communis] gi|223547368|gb|EEF48863.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224075744|ref|XP_002304747.1| predicted protein [Populus trichocarpa] gi|222842179|gb|EEE79726.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224075748|ref|XP_002304749.1| predicted protein [Populus trichocarpa] gi|222842181|gb|EEE79728.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224111146|ref|XP_002332978.1| predicted protein [Populus trichocarpa] gi|222834309|gb|EEE72786.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224098244|ref|XP_002334570.1| predicted protein [Populus trichocarpa] gi|222873184|gb|EEF10315.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224144479|ref|XP_002325303.1| predicted protein [Populus trichocarpa] gi|222862178|gb|EEE99684.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255569108|ref|XP_002525523.1| conserved hypothetical protein [Ricinus communis] gi|223535202|gb|EEF36881.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|255548976|ref|XP_002515544.1| conserved hypothetical protein [Ricinus communis] gi|223545488|gb|EEF46993.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|255544800|ref|XP_002513461.1| conserved hypothetical protein [Ricinus communis] gi|223547369|gb|EEF48864.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query431
TAIR|locus:2116667680 AT4G31980 "AT4G31980" [Arabido 0.935 0.592 0.372 2.1e-68
TAIR|locus:2148042353 AT5G11290 "AT5G11290" [Arabido 0.802 0.980 0.362 2.1e-52
TAIR|locus:2044918448 AT2G36430 "AT2G36430" [Arabido 0.879 0.845 0.304 3.1e-44
TAIR|locus:2083138503 AT3G50160 "AT3G50160" [Arabido 0.819 0.701 0.320 1.3e-43
TAIR|locus:2083108539 AT3G50140 [Arabidopsis thalian 0.373 0.298 0.335 4.7e-42
TAIR|locus:2074755541 AT3G50170 "AT3G50170" [Arabido 0.338 0.269 0.362 5.9e-40
TAIR|locus:2171132492 AT5G22550 "AT5G22550" [Arabido 0.352 0.308 0.379 7.7e-40
TAIR|locus:2083078531 AT3G50120 "AT3G50120" [Arabido 0.378 0.306 0.333 2e-39
TAIR|locus:2171127440 AT5G22540 "AT5G22540" [Arabido 0.881 0.863 0.274 4.9e-37
TAIR|locus:2074760588 AT3G50180 [Arabidopsis thalian 0.825 0.605 0.304 5.4e-37
TAIR|locus:2116667 AT4G31980 "AT4G31980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 156/419 (37%), Positives = 230/419 (54%)

Query:    18 EKLADSLSGELESLHPLARECSIYRVPEATRCSHPSHFTPRMVSIGPFHHGKEELKAMEE 77
             + L DS+  +L  L  L+ +C IY+VP   R  +P  +TPR+VS GP H GKEEL+AME+
Sbjct:   273 DALVDSIKAKLAFLSSLSTKCCIYKVPNKLRRLNPDAYTPRLVSFGPLHRGKEELQAMED 332

Query:    78 HKKRYLKCFLQRTKVRIASFVGFIKAREAELRNCYAETIHLGSDEFIKMVLVDAVFLIEL 137
              K RYL  F+ RT   +   V   +  E   R+CYAE + L SDEF++M++VD  FL+EL
Sbjct:   333 QKYRYLLSFIPRTNSSLEDLVRLARTWEQNARSCYAEDVKLHSDEFVEMLVVDGSFLVEL 392

Query:   138 FLKYYQPNLRTNEDPILGKLFLYNDVTHEILLLENQLPLFILNGLFNLAKTETFEANLYE 197
              L+ + P LR   D I G   +  DV  +++L+ENQLP F++  +F L        N Y+
Sbjct:   393 LLRSHYPRLRGENDRIFGNSMMITDVCRDMILIENQLPFFVVKEIFLLL------LNYYQ 446

Query:   198 EISFMTITCFWFRDDIVGYLPIQENLLEINFSKAKHFVDLLILCLQPS-QSRAVFA-LKD 255
             +    T +          Y  +     E   ++ +HFVDLL  C  P    +  +  +K 
Sbjct:   447 Q---GTPSIIQLAQRHFSYF-LSRIDDEKFITEPEHFVDLLRSCYLPQFPIKLEYTTVKV 502

Query:   256 LNIPSVMELHQAGVKFKRG-SSKDLLDIKFNEGILEIPFLTVYDPTERLYRNVLAFEMMH 314
              N P   ELH AGV+FK   +S  LLDI F +G+L+IP + V D TE LY+N++ FE   
Sbjct:   503 DNAPEATELHTAGVRFKPAETSSCLLDISFADGVLKIPTIVVDDLTESLYKNIIGFEQCR 562

Query:   315 SYTKYLNDYIIMMNYLVSTSKDAELLLQNEIIG--LGNTEAVPTVFRNLDKGCAISYSYF 372
                K   DYI+++   + +  DA+LL+ + II   LGN+  V  +F ++ K   I    F
Sbjct:   563 CSNKNFLDYIMLLGCFIKSPTDADLLIHSGIIVNYLGNSVDVSNLFNSISKE-VIYDRRF 621

Query:   373 QYSGVVADLQAYCKLPWHKWKATLKQNYFNTPWXXXXXXXXXXXXXXXXXQTVCSLIAL 431
              +S +  +LQAYC  PW++WKA L+++YF+ PW                 Q+VCS++AL
Sbjct:   622 YFSMLSENLQAYCNTPWNRWKAILRRDYFHNPWAVASVFAALLLLLLTFIQSVCSILAL 680




GO:0003674 "molecular_function" evidence=ND
GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0006865 "amino acid transport" evidence=RCA
TAIR|locus:2148042 AT5G11290 "AT5G11290" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044918 AT2G36430 "AT2G36430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083138 AT3G50160 "AT3G50160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083108 AT3G50140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074755 AT3G50170 "AT3G50170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171132 AT5G22550 "AT5G22550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083078 AT3G50120 "AT3G50120" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171127 AT5G22540 "AT5G22540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074760 AT3G50180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
fgenesh4_pm.C_LG_XVIII000126
hypothetical protein (410 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query431
pfam03140387 pfam03140, DUF247, Plant protein of unknown functi 1e-115
>gnl|CDD|217385 pfam03140, DUF247, Plant protein of unknown function Back     alignment and domain information
 Score =  341 bits (878), Expect = e-115
 Identities = 151/397 (38%), Positives = 218/397 (54%), Gaps = 26/397 (6%)

Query: 40  IYRVPEATRCSHPSHFTPRMVSIGPFHHGKEELKAMEEHKKRYLKCFLQRTK--VRIASF 97
           IYRVP   R  +P  + PR+VSIGP+HHGK  L+AMEEHK RYL  FL RT   + +   
Sbjct: 1   IYRVPARLRDVNPEAYEPRVVSIGPYHHGKPHLRAMEEHKWRYLNRFLDRTGRGLSLEDL 60

Query: 98  VGFIKAREAELRNCYAE-TIHLGSDEFIKMVLVDAVFLIELFLKYYQPNLRTNEDPILGK 156
           +  ++  E E R CYAE    + S+EF++M+L+D  F++ELFL+     +    DP+  +
Sbjct: 61  LAAVRELEEEARACYAEDVDWMSSEEFVEMLLLDGCFILELFLRL-SEGIYGENDPLFAR 119

Query: 157 LFLYNDVTHEILLLENQLPLFILNGLFNLAKTETFEANLYEEISFMTITCFWFRDDIVGY 216
            +L + +  ++LLLENQ+P F+L  LF L            + S   +    F  D    
Sbjct: 120 RWLLSLIRRDLLLLENQIPFFVLEKLFELLTGR-----QDVKTSLNDLA-LRFFYDCESL 173

Query: 217 LPIQENLLEINFSKAKHFVDLLILCL---------QPSQSRAVFALKDLNIPSVMELHQA 267
           LP  + + E   S   H +DLL   L           +  R   A     IPS  EL +A
Sbjct: 174 LPPDDLIEE---SNVHHLLDLLRRSLLPSTSPDPTPAAPPRDNGAATPRLIPSATELREA 230

Query: 268 GVKFKRGS-SKDLLDIKFNEGILEIPFLTVYDPTERLYRNVLAFEMMH-SYTKYLNDYII 325
           GV+FKR   +  +LD+ F  G+LEIP L V D TE L RN++AFE  H     ++  Y+ 
Sbjct: 231 GVRFKRRKTASCILDVSFKRGVLEIPRLAVDDGTESLLRNLIAFEQCHGGSGNHVTSYVA 290

Query: 326 MMNYLVSTSKDAELLLQNEII--GLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQA 383
            M+ L++T++D  LL +  I+   LG+ E V   F  L +G          SGV  D+  
Sbjct: 291 FMDNLINTAEDVALLRRKGILENLLGSDEEVAKFFNRLCRGVVFDVDDSYLSGVFEDVNR 350

Query: 384 YCKLPWHKWKATLKQNYFNTPWASISVIAAVILLLLT 420
           YC+  W++WKATL++ YF+ PWA+IS++AAV+LL+LT
Sbjct: 351 YCRSRWNRWKATLRRKYFSNPWAAISLLAAVVLLVLT 387


The function of the plant proteins constituting this family is unknown. Length = 387

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 431
PF03140391 DUF247: Plant protein of unknown function; InterPr 100.0
>PF03140 DUF247: Plant protein of unknown function; InterPro: IPR004158 The function of the plant proteins constituting this family is unknown Back     alignment and domain information
Probab=100.00  E-value=1.8e-108  Score=843.46  Aligned_cols=371  Identities=42%  Similarity=0.730  Sum_probs=335.0

Q ss_pred             eeecCCccccCCCCCCccceeeeccccCChhhhhHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHhcccccc
Q 044114           40 IYRVPEATRCSHPSHFTPRMVSIGPFHHGKEELKAMEEHKKRYLKCFLQRTK---VRIASFVGFIKAREAELRNCYAETI  116 (431)
Q Consensus        40 I~rVP~~lr~~n~~aY~P~~VSIGPyHhg~~~L~~mE~~K~~~~~~~l~r~~---~~l~~~~~~i~~~e~~~R~~Y~~~~  116 (431)
                      |||||+++|++|+++|+|++|||||||||+++|+.||++||+|++.|++|++   .++++++++|+++|++||+||++++
T Consensus         1 I~rVP~~lr~~~~~~Y~P~~VsIGPyH~g~~~L~~mE~~K~~~l~~~l~~~~~~~~~l~~~~~~i~~~e~~~R~~Y~~~~   80 (391)
T PF03140_consen    1 IYRVPESLRDVNPKAYTPQVVSIGPYHHGKPDLQEMEEHKLRYLHRFLKRSGAPAESLEDYVEAIRSLEEEARACYAEDI   80 (391)
T ss_pred             CcCCCHHHccCCchhcCCceEEeCCCCCCchhhhhhHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhcccc
Confidence            8999999999999999999999999999999999999999999999999998   7899999999999999999999999


Q ss_pred             C-CChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-cccccchhhHHHHHHHhhccCchHHHHHHHHhhhhccccccc
Q 044114          117 H-LGSDEFIKMVLVDAVFLIELFLKYYQPNLRTNEDP-ILGKLFLYNDVTHEILLLENQLPLFILNGLFNLAKTETFEAN  194 (431)
Q Consensus       117 ~-~~~~ef~~MmllDGCFiLe~l~~~~~~~~~~~~d~-~~~~~~~~~~i~~DllLLENQiPffVL~~L~~~~~~~~~~~~  194 (431)
                      + +++++|++||++|||||||+|+++..  ..+.+|| +++.+|....|++||+|||||||||||++||++..+    ..
T Consensus        81 ~~~~~~~f~~MmllDgCFlLe~~~~~~~--~~~~~d~~~~~~~~~~~~i~~Dl~LLENQIPffVL~~L~~l~~~----~~  154 (391)
T PF03140_consen   81 DDMSSDEFVEMMLLDGCFLLEFFLRYSR--SDGENDPGIFSRPWLLSAIRRDLLLLENQIPFFVLEKLFELLFG----SK  154 (391)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHhhhh--ccccccccccccccccccchhheeeecccchHHHHHHHHHHhcc----cc
Confidence            7 99999999999999999999999876  2346788 889999999999999999999999999999999884    33


Q ss_pred             ccccccHHHHHHhhccccccCCCCCcchhhccccCcCCChHHHHHHHhCCCC--Cc-cc--c-c-----cccccCCCHHH
Q 044114          195 LYEEISFMTITCFWFRDDIVGYLPIQENLLEINFSKAKHFVDLLILCLQPSQ--SR-AV--F-A-----LKDLNIPSVME  263 (431)
Q Consensus       195 ~~~~~~l~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~HlLdL~~~~~~p~~--~~-~~--~-~-----~~~~~~~sAte  263 (431)
                      .....++.+++.+||....+.. .+.   ......+++|||||+|.+++|++  .. .+  + .     .....||||||
T Consensus       155 ~~~~~~l~~l~~~~~~~~~~~~-~~~---~~~~~~~~~HlL~L~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~sA~e  230 (391)
T PF03140_consen  155 SDVDESLIDLVLKFFYKHWPSW-PPD---EPISNPEPHHLLDLLRMSLLPSPPSSSPTPPRPPRSNGEKPPPKRIRSATE  230 (391)
T ss_pred             cCccchHHHHHHhHhccccccc-ccc---ccccCCCCCChHHHHHHHhccccCCcccCCCCcccccccccccccCCCHHH
Confidence            3446789999999994332222 111   12234578999999999999932  11 11  1 1     13468999999


Q ss_pred             HHHcCcEEEeCCCC-CccceEEccceeecceEEeecCcchhcccHHHHhhhccC-CcchhhHHHHHHhhcCChHhHHHHH
Q 044114          264 LHQAGVKFKRGSSK-DLLDIKFNEGILEIPFLTVYDPTERLYRNVLAFEMMHSY-TKYLNDYIIMMNYLVSTSKDAELLL  341 (431)
Q Consensus       264 L~~aGVkfk~~~~~-~llDI~F~~G~L~IP~l~id~~T~~llrNLiA~Eq~~~~-~~~vtsY~~fM~~Li~t~eDV~lL~  341 (431)
                      |++|||+||++++. +++||+|++|+|+||+|.||++|+++||||||||||+.. +.+|||||.||++||+|++||++|+
T Consensus       231 L~~aGV~fk~~~~~~~~lDv~F~~G~L~IP~L~id~~T~~~lrNLiA~Eq~~~~~~~~vtsY~~fm~~Li~t~~DV~lL~  310 (391)
T PF03140_consen  231 LREAGVKFKPSETDRSLLDVKFKKGVLEIPPLYIDDNTESLLRNLIAFEQCHPPTGSYVTSYVFFMDSLINTPEDVELLR  310 (391)
T ss_pred             HHhCCcEEeeccCccccccceecCCEEEeCeEEECCcchHHHhHHHHHHHHhccCCchHhHHHHHHHHHhCcHhhHHHHH
Confidence            99999999998876 599999999999999999999999999999999999998 8999999999999999999999999


Q ss_pred             HcCee--ccCCCchHHHHHHhhccCCcccCCCCchHHHHHHHHhhhcCchhHhHhhhcccccccchHHHHHHHHHHHHHH
Q 044114          342 QNEII--GLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKLPWHKWKATLKQNYFNTPWASISVIAAVILLLL  419 (431)
Q Consensus       342 ~~gIi--~lgsdeeVa~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r~~~w~a~l~~~yf~npW~~is~~aA~ill~l  419 (431)
                      ++|||  ++|||+||+++||+||+++..+.+++||.+++++||+||++||++|+|+++|+||+|||+++|++||+++|+|
T Consensus       311 ~kgIi~~~l~~d~eva~~F~~L~~~v~~~~~~~~~~~v~~~l~~~~~~~~~~~~a~l~~~yf~~pw~~is~~aa~~ll~l  390 (391)
T PF03140_consen  311 RKGIIVNWLGSDEEVAKLFNGLCKGVVFDVDDSYYSDVCEDLNKYYQSRWNRWWAWLRRKYFSNPWTFISLVAAIILLLL  390 (391)
T ss_pred             hCCeEecCCCCcHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHh
Confidence            99999  8999999999999999999988778899999999999999999999999999999999999999999999999


Q ss_pred             H
Q 044114          420 T  420 (431)
Q Consensus       420 t  420 (431)
                      |
T Consensus       391 T  391 (391)
T PF03140_consen  391 T  391 (391)
T ss_pred             C
Confidence            7




Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query431
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 48/345 (13%), Positives = 103/345 (29%), Gaps = 87/345 (25%)

Query: 2   DTRKH---EHEGYGVSID--MEKLADSLSGELESL-------HPLARECSIYRVPEATRC 49
            T  H   +H    ++ D     L   L    + L       +P     SI  + E+ R 
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LSI--IAESIR- 338

Query: 50  SHPSHFTP-RMVSIGPFHHGKEE-LKAME--EHKKRYLKCFLQRTKVRIASFV-----GF 100
              + +   + V+        E  L  +E  E++K + +  +      I + +       
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398

Query: 101 IKAREAELRNCYAETIHLGSDEFIKMVLVD------AVFLIELFLKYYQPNLRTNEDPIL 154
           +   +  +            ++  K  LV+       + +  ++L+          +  L
Sbjct: 399 VIKSDVMVV----------VNKLHKYSLVEKQPKESTISIPSIYLELKVKL---ENEYAL 445

Query: 155 GKLFL--YNDVTHEILLLENQLPLFILNGLFN-----LAKTETFE-----ANLYEEISFM 202
            +  +  YN    +    ++ +P ++    ++     L   E  E       ++ +  F+
Sbjct: 446 HRSIVDHYN--IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503

Query: 203 -----TITCFWFRDDIVGYLPIQENLLEINFSKAKHFVDLLILCLQPSQSRAVFALKDLN 257
                  +  W          I   L ++ F K  +  D       P   R V A+ D  
Sbjct: 504 EQKIRHDSTAW-----NASGSILNTLQQLKFYK-PYICD-----NDPKYERLVNAILDF- 551

Query: 258 IPSVMELHQAGVKFKRGSSKDLLDIKFNEGILEIPFLTVYDPTER 302
                 L +           DLL I      L      +++   +
Sbjct: 552 ------LPKIEENLICSKYTDLLRI-----ALMAEDEAIFEEAHK 585


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00