Citrus Sinensis ID: 044130

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-----

MHYGKKLEYKGEEALKEIEKLTAKADEVQNNLLREILIRNGETEYLRKYLRGSKDVSDFKRCVPVSTYKNIYPYIQRIAISGEDSSLISGHPITEMLCRYICGLDEGKAMYFYFVKAEMSTPSGLPTRTVLTSYYKSKHFKCRTRDPYNDFTSPDPAILCNDSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQLCNDIRSGRLDLTITDPGCRSSTLSLLTSPNPTLADEIEEICSRPSWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLKPLSNPADVSFTLLPNMCYFEFLPLGGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTSTVPGHYVLYWEIQIVDSPALPLDHQKVLEECCIAVEEQLDYVYRRCRSHDKSVGPLEIRVVEPGTFETLMDLLVSQGGSINQYKTPRCIKSNNAALMLLDSHVKDSFFSPRDPKWIP

cccHHHHcHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHcccccccccHHHHHHHHHHcccccccccccccHHHHHHcccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHccccccccHHHHHHHHHcccccccccccccccccEEEEEEcccccccHHHHHHHHcccccEEccccccccEEEEEEccccccccccEEEEcccEEEEEEEEcccccccccccccccccccccccEEEccccccccEEEEEEEcccEEEEEccccEEEEEEEEccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHccccccEEEEEEEEEccccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEcccccHHHHHHHHHHcccccccccccEEEccHHHHHHHHHcccccEEcccccccccc

cccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHHccccccHHHHHHcccEEEHHHHHHHHHHHHHccccccccccccHHHHHHccccccccccEEEEEEEcccccccccEEcccccccccccHHHccccccccccccccccEEEcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccHcHHHHHccccEEEEEEEcccHHHHHHHHHHHHcccccEEEccccccccEEEEEcccccccccEEEEEEcccEEEEEEEcccccccccccccccccccccccEEEEEEEEEccEEEEEEEEcccEEEEEEccEEEEEcccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHccHHHHEcEccccccccEEEEEEcccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHccHHHccccccccccc

mhygkkleYKGEEALKEIEKLTAKADEVQNNLLREILIRNGETEYLRKYLRgskdvsdfkrcvpvstykniyPYIQRIAisgedsslisghpiTEMLCRYICGLDEGKAMYFYFVKAemstpsglptrtVLTSYykskhfkcrtrdpyndftspdpailcndsnqsMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQLCNDIrsgrldltitdpgcrsstlslltspnptladEIEEIcsrpswkgilcqlwpraKYIEAVVTGSmaqyipsleyysagklplvgtmyassecyfgvnlkplsnpadvsftllpnmcyfeflplggengtllsmefneeeevpndklvdlghvrvGHYYELVVTTFaglnryrigdvlqvtgfynrapqfrfiCRRNVVlsidndktneedLHKSVTIAKNLLEPYSALLVEYTsyadtstvpghyVLYWEIqivdspalpldhqKVLEECCIAVEEQLDYVYRRCrshdksvgpleirvvepgtFETLMDLLVSqggsinqyktprciksnNAALMLLDshvkdsffsprdpkwip

mhygkkleykgeEALKEIEKLTAKADEVQNNLLREilirngeteYLRKYlrgskdvsdfkrcvpvstykniYPYIQRIAISGEDSSLISGHPITEMLCRYICGLDEGKAMYFYFVKAemstpsglptrTVLTSYYKSkhfkcrtrdpyndFTSPDPAILCNDSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQLCNDIRSGRLDLTitdpgcrsstlslltspnptLADEIEEICSRPSWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLKPLSNPADVSFTLLPNMCYFEFLPLGGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTFAGLNRYRIGDVLQVTGFynrapqfrfiCRRNVVLSidndktneedlHKSVTIAKNLLEPYSALLVEYTSYADTSTVPGHYVLYWEIQIVDSPALPLDHQKVLEECCIAVEEQLDYVYRRCrshdksvgpleirvvEPGTFETLMDLLVSQGGSINQYKTPRCIKSNNAALMLLDShvkdsffsprdpkwip

MHYGKKLEYKGEEALKEIEKLTAKADEVQNNLLREILIRNGETEYLRKYLRGSKDVSDFKRCVPVSTYKNIYPYIQRIAISGEDSSLISGHPITEMLCRYICGLDEGKAMYFYFVKAEMSTPSGLPTRTVLTSYYKSKHFKCRTRDPYNDFTSPDPAILCNDSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQLCNDIRSGRLDLTITDPGCRsstlslltspnptlADEIEEICSRPSWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLKPLSNPADVSFTLLPNMCYFEFLPLGGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTSTVPGHYVLYWEIQIVDSPALPLDHQKVLEECCIAVEEQLDYVYRRCRSHDKSVGPLEIRVVEPGTFETLMDLLVSQGGSINQYKTPRCIKSNNAALMLLDSHVKDSFFSPRDPKWIP

*************************DEVQNNLLREILIRNGETEYLRKYLRGSKDVSDFKRCVPVSTYKNIYPYIQRIAISGEDSSLISGHPITEMLCRYICGLDEGKAMYFYFVKAEMSTPSGLPTRTVLTSYYKSKHFKCRTRDPYNDFTSPDPAILCNDSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQLCNDIRSGRLDLTITDPGCRSSTLSLLTSPNPTLADEIEEICSRPSWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLKPLSNPADVSFTLLPNMCYFEFLPLGGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTSTVPGHYVLYWEIQIVDSPALPLDHQKVLEECCIAVEEQLDYVYRRCRSHDKSVGPLEIRVVEPGTFETLMDLLVSQGGSINQYKTPRCIKSNNAALMLLDSHV**************

***GKKLEYKGEEALKEIEKLTAKADEVQNNLLREILIRNGETEYLRKYLRGSKDVSDFKRCVPVSTYKNIYPYIQRIAISGEDSSLISGHPITEMLCRYICGLDEGKAMYFYFVKAEMSTPSGLPTRTVLTSYYKSKHFKCRTRDPYNDFTSPDPAILCNDSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQLCNDIRSGRLDLTITDPGCRSSTLSLLTSPNPTLADEIEEICSRPSWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLKPLSNPADVSFTLLPNMCYFEFLPLGGENGT********EEEVPNDKLVDLGHVRVGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTSTVPGHYVLYWEIQIVDSPALPLDHQKVLEECCIAVEEQLDYVYRRCRSHDKSVGPLEIRVVEPGTFETLMD**************PRCIKSNNAALMLLDSHVKDSFFSPR**K***

****KKLEYKGEEALKEIEKLTAKADEVQNNLLREILIRNGETEYLRKYLRGSKDVSDFKRCVPVSTYKNIYPYIQRIAISGEDSSLISGHPITEMLCRYICGLDEGKAMYFYFVKAEMSTPSGLPTRTVLTSYYKSKHFKCRTRDPYNDFTSPDPAILCNDSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQLCNDIRSGRLDLTITDPGCRSSTLSLLTSPNPTLADEIEEICSRPSWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLKPLSNPADVSFTLLPNMCYFEFLPLGG*****************NDKLVDLGHVRVGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTSTVPGHYVLYWEIQIVDSPALPLDHQKVLEECCIAVEEQLDYVYRRCRSHDKSVGPLEIRVVEPGTFETLMDLLVSQGGSINQYKTPRCIKSNNAALMLLDSHVKDSFFSPRDPKWI*

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MHYGKKLEYKxxxxxxxxxxxxxxxxxxxxxLLREILIRNGETEYLRKYLRGSKDVSDFKRCVPVSTYKNIYPYIQRIAISGEDSSLISGHPITEMLCRYICGLDEGKAMYFYFVKAEMSTPSGLPTRTVLTSYYKSKHFKCRTRDPYNDFTSPDPAILCNDSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQLCNDIRSGRLDLTITDPGCRSSTLSLLTSPNPTLADEIEEICSRPSWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLKPLSNPADVSFTLLPNMCYFEFLPLGGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTSTVPGHYVLYWEIQIVDSPALPLDHQKVLEECCIAVEEQLDYVYRRCRSHDKSVGPLEIRVVEPGTFETLMDLLVSQGGSINQYKTPRCIKSNNAALMLLDSHVKDSFFSPRDPKWIP

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		565	2.2.26 [Sep-21-2011]
O82243		585	Putative indole-3-acetic	yes	no	0.961	0.928	0.670	0.0
P0C0M3		591	Probable indole-3-acetic	yes	no	0.971	0.928	0.611	0.0
Q9FZ87		609	Indole-3-acetic acid-amid	no	no	0.975	0.904	0.552	0.0
O81829		612	Indole-3-acetic acid-amid	no	no	0.976	0.901	0.521	1e-173
Q8LQM5		610	Probable indole-3-acetic	yes	no	0.948	0.878	0.526	1e-170
Q9LSQ4		612	Indole-3-acetic acid-amid	no	no	0.980	0.905	0.510	1e-168
O22190		595	Indole-3-acetic acid-amid	no	no	0.948	0.900	0.515	1e-168
Q60EJ6		629	Probable indole-3-acetic	no	no	0.952	0.855	0.507	1e-166
O82333		590	Probable indole-3-acetic	no	no	0.941	0.901	0.513	1e-163
Q0D4Z6		605	Probable indole-3-acetic	no	no	0.948	0.885	0.505	1e-162

>sp\|O82243\|GH39_ARATH Putative indole-3-acetic acid-amido synthetase GH3.9 OS=Arabidopsis thaliana GN=GH3.9 PE=2 SV=1	Back alignment and function desciption

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/588 (67%), Positives = 464/588 (78%), Gaps = 45/588 (7%)

Query: 12  EEALKEIEKLTAKADEVQNNLLREILIRNGETEYLRKYLRGSKDVSDFKRCVPVSTYKNI 71
           +  LKE+E++T+KA EVQ+N+LR IL RN +TEYL KY+ GSKDV +FKR VP+  YK+I
Sbjct: 9   DSVLKELERITSKAAEVQDNILRGILERNKDTEYLSKYMNGSKDVLEFKRAVPIIIYKDI 68

Query: 72  YPYIQRIAISGEDSSLISGHPITEMLC--------------------------------- 98
           YPYIQRIA +GEDSSLI+GH ITE+LC                                 
Sbjct: 69  YPYIQRIA-NGEDSSLITGHSITEILCSSGTSAGEPKLMPTIPEDLDRRTFLYNLIIPIV 127

Query: 99  -RYICGLDEGKAMYFYFVKAEMSTPSGLPTRTVLTSYYKSKHFKCRTRDPYNDFTSPDPA 157
            +YI GLD+GKAMY  FVKAE STP GLP R VLTSYYKSKHF+CR  DP+ND TSP   
Sbjct: 128 NKYITGLDKGKAMYLNFVKAETSTPCGLPIRAVLTSYYKSKHFQCRPYDPFNDLTSPIQT 187

Query: 158 ILCNDSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQLCNDIRSGRLDL 217
           ILC DSNQSMYCQLLAGLIHRH+V+RLGAVFASA LRAIS+LE+ W QLC DIR+G L+ 
Sbjct: 188 ILCEDSNQSMYCQLLAGLIHRHKVMRLGAVFASAFLRAISYLEKKWSQLCEDIRTGSLNP 247

Query: 218 TITDPGCRSSTLSLLTSPNPTLADEIEEICSRPSWKGILCQLWPRAKYIEAVVTGSMAQY 277
            ITDPGC+ +   LL SPNP LA EIEEIC R SWKGILCQLWP+AK+IEAVVTGSMAQY
Sbjct: 248 MITDPGCQMAMSCLLMSPNPELASEIEEICGRSSWKGILCQLWPKAKFIEAVVTGSMAQY 307

Query: 278 IPSLEYYSAGKLPLVGTMYASSECYFGVNLKPLSNPADVSFTLLPNMCYFEFLPLGGENG 337
           IP+LE++S GK+PLV  MYASSE YFGVN++PLS P+DV FTLLPNMCYFEF+PL G+NG
Sbjct: 308 IPALEFFSQGKIPLVCPMYASSETYFGVNVEPLSKPSDVVFTLLPNMCYFEFIPL-GKNG 366

Query: 338 TLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQ 397
           T LS + +++E+VP DK+VDL +V++G YYELVVTTFAGL RYRIGDVLQV GFYN APQ
Sbjct: 367 T-LSFDLDDDEQVPCDKVVDLVNVKLGRYYELVVTTFAGLYRYRIGDVLQVAGFYNGAPQ 425

Query: 398 FRFICRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTSTVPGHYVLY 457
           FRFICRRNVVLSID DKTNEEDLH+S+T+AK  L   +A L EYTSYADTS+VPGHYVL+
Sbjct: 426 FRFICRRNVVLSIDLDKTNEEDLHRSITLAKKKLGS-NAFLAEYTSYADTSSVPGHYVLF 484

Query: 458 WEIQIVDSPALPLDHQKVLEECCIAVEEQLDYVYRRCRSHDKSVGPLEIRVVEPGTFETL 517
           WEIQ    P       K++EECC+AVEE+LDY+YR+CR+ ++S+G LEIRVV+PGTFE L
Sbjct: 485 WEIQGHLEP-------KLMEECCVAVEEELDYIYRQCRTKERSIGALEIRVVKPGTFEKL 537

Query: 518 MDLLVSQGGSINQYKTPRCIKSNNAALMLLDSHVKDSFFSPRDPKWIP 565
           MDL++SQGGS NQYKTPRC+KSN+A   LL+ HV  SFFSPRDP W+P
Sbjct: 538 MDLIISQGGSFNQYKTPRCVKSNSATFKLLNGHVMASFFSPRDPTWVP 585

Catalyzes the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|P0C0M3\|GH311_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.11 OS=Oryza sativa subsp. japonica GN=GH3.11 PE=2 SV=1	Back alignment and function description

>sp\|Q9FZ87\|GH317_ARATH Indole-3-acetic acid-amido synthetase GH3.17 OS=Arabidopsis thaliana GN=GH3.17 PE=1 SV=1	Back alignment and function description

>sp\|O81829\|GH35_ARATH Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1	Back alignment and function description

>sp\|Q8LQM5\|GH31_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Oryza sativa subsp. japonica GN=GH3.1 PE=2 SV=1	Back alignment and function description

>sp\|Q9LSQ4\|GH36_ARATH Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1	Back alignment and function description

>sp\|O22190\|GH33_ARATH Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1	Back alignment and function description

>sp\|Q60EJ6\|GH34_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.4 OS=Oryza sativa subsp. japonica GN=GH3.4 PE=2 SV=1	Back alignment and function description

>sp\|O82333\|GH31_ARATH Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1	Back alignment and function description

>sp\|Q0D4Z6\|GH38_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		565
225437300		596	PREDICTED: putative indole-3-acetic acid	0.985	0.934	0.762	0.0
255582164		597	Indole-3-acetic acid-amido synthetase GH	0.985	0.932	0.753	0.0
224068322		596	GH3 family protein [Populus trichocarpa]	0.984	0.932	0.75	0.0
356535333		608	PREDICTED: putative indole-3-acetic acid	0.987	0.917	0.709	0.0
356500270		606	PREDICTED: putative indole-3-acetic acid	0.985	0.919	0.711	0.0
297743855		548	unnamed protein product [Vitis vinifera]	0.900	0.928	0.687	0.0
297828495		589	auxin-responsive GH3 family protein [Ara	0.964	0.925	0.671	0.0
15227128		585	putative indole-3-acetic acid-amido synt	0.961	0.928	0.670	0.0
215512252		594	putative indole-3-acetic acid-amido synt	0.971	0.924	0.649	0.0
357116086		590	PREDICTED: probable indole-3-acetic acid	0.975	0.933	0.615	0.0

>gi\|225437300\|ref\|XP_002263353.1\| PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  927 bits (2396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/599 (76%), Positives = 512/599 (85%), Gaps = 42/599 (7%)

Query: 4   GKKLEYKGEEALKEIEKLTAKADEVQNNLLREILIRNGETEYLRKYLRGSKDVSDFKRCV 63
           GK+LEY+GEEALKE+EK TAKADEVQ N+L+EI+ RN ETEYL+KY+ GSKDV +FK+ V
Sbjct: 3   GKRLEYRGEEALKELEKFTAKADEVQENILKEIIARNCETEYLKKYMGGSKDVLEFKQSV 62

Query: 64  PVSTYKNIYPYIQRIAISGEDSSLISGHPITEMLC------------------------- 98
           PV TYK+I+PYIQRIA +GEDSSLISGHPITEMLC                         
Sbjct: 63  PVITYKDIHPYIQRIA-NGEDSSLISGHPITEMLCSSGTSGGEPKMMPSIAEDLNRRTFL 121

Query: 99  ---------RYICGLDEGKAMYFYFVKAEMSTPSGLPTRTVLTSYYKSKHFKCRTRDPYN 149
                    +YI GLDEGKAM+ YFVKAEMSTP GLP R VLTSYYKSK+F+CR RD +N
Sbjct: 122 YNLIMPIMNQYIPGLDEGKAMFLYFVKAEMSTPCGLPARAVLTSYYKSKNFRCRVRDAFN 181

Query: 150 DFTSPDPAILCNDSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQLCND 209
           DFTSPD AILC DSNQSMYCQLLAGL+HRHQVLRLGAVFASALLRAISFLER+W  LCND
Sbjct: 182 DFTSPDQAILCTDSNQSMYCQLLAGLVHRHQVLRLGAVFASALLRAISFLERHWVHLCND 241

Query: 210 IRSGRLDLTITDPGCRSSTLSLLTSPNPTLADEIEEICSRPSWKGILCQLWPRAKYIEAV 269
           IR+G LD +ITDP CRSS  ++L+SPNP LADEIEEICS PSWKG+L QLWPRAKYIEAV
Sbjct: 242 IRTGHLDSSITDPECRSSMSTILSSPNPHLADEIEEICSHPSWKGMLSQLWPRAKYIEAV 301

Query: 270 VTGSMAQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLKPLSNPADVSFTLLPNMCYFEF 329
           +TGSMAQYIPSLEYYS GKLPLV TMYASSECYFGVN+KPL +PADV+FTLLPNMCYFEF
Sbjct: 302 ITGSMAQYIPSLEYYSGGKLPLVCTMYASSECYFGVNMKPLCDPADVAFTLLPNMCYFEF 361

Query: 330 LPLGGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTFAGLNRYRIGDVLQVT 389
           +PL GENGTLL M+ +EE+ VP +KLVDL HVR+G YYELVVTTFAGLNRYRIGDVLQVT
Sbjct: 362 IPL-GENGTLL-MDMDEEKGVPKEKLVDLVHVRLGCYYELVVTTFAGLNRYRIGDVLQVT 419

Query: 390 GFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTST 449
           GF+NRAPQFRFICRRNVVLSIDNDKTNEEDLH+S+T+AK LLEPY+ALLVEYTSYADTS+
Sbjct: 420 GFHNRAPQFRFICRRNVVLSIDNDKTNEEDLHRSITMAKKLLEPYNALLVEYTSYADTSS 479

Query: 450 VPGHYVLYWEIQ---IVDSPALPLDHQKVLEECCIAVEEQLDYVYRRCRSHDKSVGPLEI 506
           +PGHYVLYWEI      DSP+ PLD  KVLEECCIAVEE+LDY+YRRCR+HDKSVGPLEI
Sbjct: 480 LPGHYVLYWEITHCISTDSPSTPLD-SKVLEECCIAVEEELDYIYRRCRTHDKSVGPLEI 538

Query: 507 RVVEPGTFETLMDLLVSQGGSINQYKTPRCIKSNNAALMLLDSHVKDSFFSPRDPKWIP 565
           R+V+PGTFE LMDL +SQGGSINQYKTPRCIKS+N AL LL+S+V+ SFFSPRDP+WIP
Sbjct: 539 RLVQPGTFEDLMDLFISQGGSINQYKTPRCIKSSN-ALKLLNSNVEASFFSPRDPRWIP 596

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255582164\|ref\|XP_002531876.1\| Indole-3-acetic acid-amido synthetase GH3.17, putative [Ricinus communis] gi\|223528484\|gb\|EEF30513.1\| Indole-3-acetic acid-amido synthetase GH3.17, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224068322\|ref\|XP_002302704.1\| GH3 family protein [Populus trichocarpa] gi\|222844430\|gb\|EEE81977.1\| GH3 family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356535333\|ref\|XP_003536201.1\| PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9-like [Glycine max]	Back alignment and taxonomy information

>gi\|356500270\|ref\|XP_003518956.1\| PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9-like [Glycine max]	Back alignment and taxonomy information

>gi\|297743855\|emb\|CBI36825.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297828495\|ref\|XP_002882130.1\| auxin-responsive GH3 family protein [Arabidopsis lyrata subsp. lyrata] gi\|297327969\|gb\|EFH58389.1\| auxin-responsive GH3 family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|15227128|ref|NP_182296.1| putative indole-3-acetic acid-amido synthetase GH3.9 [Arabidopsis thaliana] gi|62900129|sp|O82243.1|GH39_ARATH RecName: Full=Putative indole-3-acetic acid-amido synthetase GH3.9; AltName: Full=Auxin-responsive GH3-like protein 9; Short=AtGH3-9 gi|3738288|gb|AAC63630.1| putative auxin-responsive protein [Arabidopsis thaliana] gi|15810040|gb|AAL06947.1| At2g47750/F17A22.14 [Arabidopsis thaliana] gi|23308451|gb|AAN18195.1| At2g47750/F17A22.14 [Arabidopsis thaliana] gi|330255788|gb|AEC10882.1| putative indole-3-acetic acid-amido synthetase GH3.9 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|215512252\|gb\|ACJ68117.1\| putative indole-3-acetic acid-amido synthetase [Brassica napus]	Back alignment and taxonomy information

>gi\|357116086\|ref\|XP_003559815.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.11-like [Brachypodium distachyon]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		565
TAIR\|locus:2043308		585	GH3.9 "AT2G47750" [Arabidopsis	0.819	0.791	0.697	7.6e-209
UNIPROTKB\|P0C0M3		591	GH3.11 "Probable indole-3-acet	0.819	0.783	0.656	6.1e-183
TAIR\|locus:2010484		609	GH3.17 [Arabidopsis thaliana (	0.833	0.773	0.589	1.5e-166
TAIR\|locus:2131739		612	WES1 [Arabidopsis thaliana (ta	0.821	0.758	0.558	2.3e-159
UNIPROTKB\|Q8LQM5		610	GH3.1 "Probable indole-3-aceti	0.803	0.744	0.559	1.1e-155
TAIR\|locus:2147314		612	DFL1 "DWARF IN LIGHT 1" [Arabi	0.815	0.753	0.557	1e-154
TAIR\|locus:2058588		595	GH3.3 [Arabidopsis thaliana (t	0.791	0.751	0.552	8.1e-153
UNIPROTKB\|P0C0M2		614	GH3.2 "Probable indole-3-aceti	0.807	0.742	0.521	3.7e-146
TAIR\|locus:2201170		578	AT1G23160 [Arabidopsis thalian	0.773	0.756	0.519	1.3e-143
TAIR\|locus:2202832		597	GH3.4 [Arabidopsis thaliana (t	0.810	0.767	0.519	5.5e-143

TAIR\|locus:2043308 GH3.9 "AT2G47750" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1739 (617.2 bits), Expect = 7.6e-209, Sum P(2) = 7.6e-209
 Identities = 330/473 (69%), Positives = 386/473 (81%)

Query:    93 ITEMLCRYICGLDEGKAMYFYFVKAEMSTPSGLPTRTVLTSYYKSKHFKCRTRDPYNDFT 152
             I  ++ +YI GLD+GKAMY  FVKAE STP GLP R VLTSYYKSKHF+CR  DP+ND T
Sbjct:   123 IIPIVNKYITGLDKGKAMYLNFVKAETSTPCGLPIRAVLTSYYKSKHFQCRPYDPFNDLT 182

Query:   153 SPDPAILCNDSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQLCNDIRS 212
             SP   ILC DSNQSMYCQLLAGLIHRH+V+RLGAVFASA LRAIS+LE+ W QLC DIR+
Sbjct:   183 SPIQTILCEDSNQSMYCQLLAGLIHRHKVMRLGAVFASAFLRAISYLEKKWSQLCEDIRT 242

Query:   213 GRLDLTITDPGCRXXXXXXXXXXXXXXADEIEEICSRPSWKGILCQLWPRAKYIEAVVTG 272
             G L+  ITDPGC+              A EIEEIC R SWKGILCQLWP+AK+IEAVVTG
Sbjct:   243 GSLNPMITDPGCQMAMSCLLMSPNPELASEIEEICGRSSWKGILCQLWPKAKFIEAVVTG 302

Query:   273 SMAQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLKPLSNPADVSFTLLPNMCYFEFLPL 332
             SMAQYIP+LE++S GK+PLV  MYASSE YFGVN++PLS P+DV FTLLPNMCYFEF+PL
Sbjct:   303 SMAQYIPALEFFSQGKIPLVCPMYASSETYFGVNVEPLSKPSDVVFTLLPNMCYFEFIPL 362

Query:   333 GGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTFAGLNRYRIGDVLQVTGFY 392
             G +NGTL S + +++E+VP DK+VDL +V++G YYELVVTTFAGL RYRIGDVLQV GFY
Sbjct:   363 G-KNGTL-SFDLDDDEQVPCDKVVDLVNVKLGRYYELVVTTFAGLYRYRIGDVLQVAGFY 420

Query:   393 NRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTSTVPG 452
             N APQFRFICRRNVVLSID DKTNEEDLH+S+T+AK  L   +A L EYTSYADTS+VPG
Sbjct:   421 NGAPQFRFICRRNVVLSIDLDKTNEEDLHRSITLAKKKLGS-NAFLAEYTSYADTSSVPG 479

Query:   453 HYVLYWEIQIVDSPALPLDHQKVLEECCIAVEEQLDYVYRRCRSHDKSVGPLEIRVVEPG 512
             HYVL+WEIQ    P       K++EECC+AVEE+LDY+YR+CR+ ++S+G LEIRVV+PG
Sbjct:   480 HYVLFWEIQGHLEP-------KLMEECCVAVEEELDYIYRQCRTKERSIGALEIRVVKPG 532

Query:   513 TFETLMDLLVSQGGSINQYKTPRCIKSNNAALMLLDSHVKDSFFSPRDPKWIP 565
             TFE LMDL++SQGGS NQYKTPRC+KSN+A   LL+ HV  SFFSPRDP W+P
Sbjct:   533 TFEKLMDLIISQGGSFNQYKTPRCVKSNSATFKLLNGHVMASFFSPRDPTWVP 585

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

UNIPROTKB\|P0C0M3 GH3.11 "Probable indole-3-acetic acid-amido synthetase GH3.11" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2010484 GH3.17 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2131739 WES1 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8LQM5 GH3.1 "Probable indole-3-acetic acid-amido synthetase GH3.1" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2147314 DFL1 "DWARF IN LIGHT 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2058588 GH3.3 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|P0C0M2 GH3.2 "Probable indole-3-acetic acid-amido synthetase GH3.2" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2201170 AT1G23160 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2202832 GH3.4 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A3BLS0	GH38_ORYSI	6, ., 3, ., 2, ., -	0.5050	0.9486	0.8859	N/A	no
P0C0M3	GH311_ORYSJ	6, ., 3, ., 2, ., -	0.6114	0.9716	0.9289	yes	no
O82243	GH39_ARATH	6, ., 3, ., 2, ., -	0.6700	0.9610	0.9282	yes	no
Q8LQM5	GH31_ORYSJ	6, ., 3, ., 2, ., -	0.5263	0.9486	0.8786	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00027964001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (596 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		565
PLN02247		606	PLN02247, PLN02247, indole-3-acetic acid-amido syn	0.0
PLN02620		612	PLN02620, PLN02620, indole-3-acetic acid-amido syn	0.0
PLN02249		597	PLN02249, PLN02249, indole-3-acetic acid-amido syn	0.0
pfam03321		513	pfam03321, GH3, GH3 auxin-responsive promoter	0.0

>gnl\|CDD\|165890 PLN02247, PLN02247, indole-3-acetic acid-amido synthetase	Back alignment and domain information

 Score =  739 bits (1908), Expect = 0.0
 Identities = 346/594 (58%), Positives = 413/594 (69%), Gaps = 43/594 (7%)

Query: 12  EEALKEIEKLTAKADEVQNNLLREILIRNGETEYLRKYLRGSKDVSDFKRCVPVSTYKNI 71
           E  LK +E LT  A ++Q  +L EIL +N  TEYLR +L G  D   FK  VPV  Y++I
Sbjct: 11  EAGLKLLEDLTTNACQIQQQVLEEILTQNAGTEYLRSFLDGESDKQSFKNKVPVVNYEDI 70

Query: 72  YPYIQRIAISGEDSSLISGHPITEMLC--------------------------------- 98
            P I+RIA +GE SS+IS  PITE+L                                  
Sbjct: 71  KPCIERIA-NGESSSIISAQPITELLTSSGTSGGQPKLMPSTAEELDRKTFFYNLLVPVM 129

Query: 99  -RYICGLDEGKAMYFYFVKAEMSTPSGLPTRTVLTSYYKSKHFKCRTRDPYNDFTSPDPA 157
            +Y+ GLD+GK MY  F+K E+STPSGL  R VLTSYYKS +F+ R  + YN +TSPD  
Sbjct: 130 NKYVDGLDQGKGMYLLFIKPEISTPSGLMARPVLTSYYKSSNFRNRPFNRYNVYTSPDET 189

Query: 158 ILCNDSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQLCNDIRSGRLDL 217
           ILC DS QSMYCQLL GL+ R +VLR+GAVFASA LRAI FLE +W +LC++IR+G +  
Sbjct: 190 ILCQDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDHWKELCSNIRTGCVSD 249

Query: 218 TITDPGCRSSTLSLLTSPNPTLADEIEEICSRPSWKGILCQLWPRAKYIEAVVTGSMAQY 277
            ITDP CR++  S+L+ PN  LAD IE  CS  SW+GI+ +LWPR KYIE +VTGSMAQY
Sbjct: 250 WITDPSCRNAVSSILSKPNSELADLIESECSGKSWEGIIKRLWPRTKYIEVIVTGSMAQY 309

Query: 278 IPSLEYYSAGKLPLVGTMYASSECYFGVNLKPLSNPADVSFTLLPNMCYFEFLPLGGENG 337
           IP+LE+YS G LPLV TMYASSECYFG+NLKPLS+P+DVS+TLLPNM YFEFLP+   NG
Sbjct: 310 IPTLEFYSGG-LPLVSTMYASSECYFGINLKPLSDPSDVSYTLLPNMAYFEFLPVDKNNG 368

Query: 338 TLLSMEFNEEEEVPNDKL------VDLGHVRVGHYYELVVTTFAGLNRYRIGDVLQVTGF 391
            ++        +  +D L      VDL  V+VGHYYELVVTTF GL RYR+GD+L VTGF
Sbjct: 369 EVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTTFTGLYRYRVGDILMVTGF 428

Query: 392 YNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTSTVP 451
           YN APQFRF+ RRNVVLSID DKTNEEDL K+VT AK LLEP   LL EYTSYADTS++P
Sbjct: 429 YNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQAKLLLEPLGFLLTEYTSYADTSSIP 488

Query: 452 GHYVLYWEIQIVDSPALPLDHQKVLEECCIAVEEQLDYVYRRCRSHDKSVGPLEIRVVEP 511
           GHYVL+WE++   S   P    K++E+CC  VEE LD VYRRCR  DKS+GPLEIRVV+ 
Sbjct: 489 GHYVLFWELKTRGSNDPPELDPKIMEQCCSTVEESLDSVYRRCRKRDKSIGPLEIRVVKH 548

Query: 512 GTFETLMDLLVSQGGSINQYKTPRCIKSNNAALMLLDSHVKDSFFSPRDPKWIP 565
           GTF+ LMD  VSQG S+NQYKTPRCIKS   AL +LDS V   FFS R P W P
Sbjct: 549 GTFDALMDFCVSQGSSVNQYKTPRCIKS-EEALKILDSRVIGRFFSKRVPFWEP 601

Length = 606

>gnl\|CDD\|166261 PLN02620, PLN02620, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|177891 PLN02249, PLN02249, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|217492 pfam03321, GH3, GH3 auxin-responsive promoter	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		565
PLN02620		612	indole-3-acetic acid-amido synthetase	100.0
PLN02247		606	indole-3-acetic acid-amido synthetase	100.0
PLN02249		597	indole-3-acetic acid-amido synthetase	100.0
PF03321		528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	100.0
COG1541		438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.68
TIGR03335		445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.54
TIGR02155		422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.49
TIGR02304		430	aden_form_hyp probable adenylate-forming enzyme. M	99.25
PRK00174		637	acetyl-CoA synthetase; Provisional	98.38
PTZ00237		647	acetyl-CoA synthetase; Provisional	98.33
PRK06060		705	acyl-CoA synthetase; Validated	98.28
TIGR02188		625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	98.27
PRK03584		655	acetoacetyl-CoA synthetase; Provisional	98.25
PRK07514		504	malonyl-CoA synthase; Validated	98.22
PRK09274		552	peptide synthase; Provisional	98.16
PRK05605		573	long-chain-fatty-acid--CoA ligase; Validated	98.16
PRK10524		629	prpE propionyl-CoA synthetase; Provisional	98.16
PRK04319		570	acetyl-CoA synthetase; Provisional	98.14
PRK09088		488	acyl-CoA synthetase; Validated	98.13
PRK13295		547	cyclohexanecarboxylate-CoA ligase; Reviewed	98.13
PRK06334		539	long chain fatty acid--[acyl-carrier-protein] liga	98.12
PRK05677		562	long-chain-fatty-acid--CoA ligase; Validated	98.11
PRK08974		560	long-chain-fatty-acid--CoA ligase; Validated	98.09
PRK07867		529	acyl-CoA synthetase; Validated	98.08
TIGR01734		502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	98.07
PRK07788		549	acyl-CoA synthetase; Validated	98.07
PLN02574		560	4-coumarate--CoA ligase-like	98.07
PRK07786		542	long-chain-fatty-acid--CoA ligase; Validated	98.02
TIGR01217		652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	98.01
PRK05852		534	acyl-CoA synthetase; Validated	98.0
TIGR03205		541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	97.99
TIGR01733		408	AA-adenyl-dom amino acid adenylation domain. This	97.98
PRK07529		632	AMP-binding domain protein; Validated	97.98
PRK07768		545	long-chain-fatty-acid--CoA ligase; Validated	97.96
PRK06187		521	long-chain-fatty-acid--CoA ligase; Validated	97.95
PRK06145		497	acyl-CoA synthetase; Validated	97.95
PRK06155		542	crotonobetaine/carnitine-CoA ligase; Provisional	97.95
PRK04813		503	D-alanine--poly(phosphoribitol) ligase subunit 1;	97.94
PLN02654		666	acetate-CoA ligase	97.94
TIGR02316		628	propion_prpE propionate--CoA ligase. This family c	97.94
TIGR03208		538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	97.93
PRK07638		487	acyl-CoA synthetase; Validated	97.92
PRK07059		557	Long-chain-fatty-acid--CoA ligase; Validated	97.92
PRK06164		540	acyl-CoA synthetase; Validated	97.91
PRK12406		509	long-chain-fatty-acid--CoA ligase; Provisional	97.9
PRK06839		496	acyl-CoA synthetase; Validated	97.89
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.89
PRK08314		546	long-chain-fatty-acid--CoA ligase; Validated	97.89
PRK13383		516	acyl-CoA synthetase; Provisional	97.87
PLN02246		537	4-coumarate--CoA ligase	97.86
PRK08316		523	acyl-CoA synthetase; Validated	97.86
PRK12583		558	acyl-CoA synthetase; Provisional	97.86
TIGR02275		527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	97.84
PLN02330		546	4-coumarate--CoA ligase-like 1	97.82
PRK06710		563	long-chain-fatty-acid--CoA ligase; Validated	97.82
PRK13382		537	acyl-CoA synthetase; Provisional	97.81
PRK08751		560	putative long-chain fatty acyl CoA ligase; Provisi	97.8
PRK13390		501	acyl-CoA synthetase; Provisional	97.8
PRK07656		513	long-chain-fatty-acid--CoA ligase; Validated	97.79
PRK07470		528	acyl-CoA synthetase; Validated	97.78
PRK12492		562	long-chain-fatty-acid--CoA ligase; Provisional	97.73
PLN02614		666	long-chain acyl-CoA synthetase	97.73
PRK13391		511	acyl-CoA synthetase; Provisional	97.73
PLN03051		499	acyl-activating enzyme; Provisional	97.72
PLN02860		563	o-succinylbenzoate-CoA ligase	97.7
PRK13388		540	acyl-CoA synthetase; Provisional	97.69
PRK08315		559	AMP-binding domain protein; Validated	97.69
TIGR03098		515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	97.67
PRK05850		578	acyl-CoA synthetase; Validated	97.65
PRK07445		452	O-succinylbenzoic acid--CoA ligase; Reviewed	97.64
PRK10946		536	entE enterobactin synthase subunit E; Provisional	97.64
PRK07868		994	acyl-CoA synthetase; Validated	97.62
PLN02736		651	long-chain acyl-CoA synthetase	97.61
PRK10252		1296	entF enterobactin synthase subunit F; Provisional	97.59
PRK08308		414	acyl-CoA synthetase; Validated	97.57
TIGR03443		1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	97.57
PRK07787		471	acyl-CoA synthetase; Validated	97.56
PTZ00342		746	acyl-CoA synthetase; Provisional	97.55
PLN03052		728	acetate--CoA ligase; Provisional	97.54
PRK08276		502	long-chain-fatty-acid--CoA ligase; Validated	97.54
PLN02861		660	long-chain-fatty-acid-CoA ligase	97.52
PRK08279		600	long-chain-acyl-CoA synthetase; Validated	97.52
PRK12476		612	putative fatty-acid--CoA ligase; Provisional	97.51
PRK07798		533	acyl-CoA synthetase; Validated	97.51
COG0365		528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	97.5
PRK07769		631	long-chain-fatty-acid--CoA ligase; Validated	97.5
PRK06178		567	acyl-CoA synthetase; Validated	97.49
PRK09192		579	acyl-CoA synthetase; Validated	97.49
PRK07824		358	O-succinylbenzoic acid--CoA ligase; Provisional	97.47
COG0318		534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	97.46
PRK08008		517	caiC putative crotonobetaine/carnitine-CoA ligase;	97.46
PLN02387		696	long-chain-fatty-acid-CoA ligase family protein	97.46
PRK03640		483	O-succinylbenzoic acid--CoA ligase; Provisional	97.46
PLN03102		579	acyl-activating enzyme; Provisional	97.43
PRK08043		718	bifunctional acyl-[acyl carrier protein] synthetas	97.43
PRK05857		540	acyl-CoA synthetase; Validated	97.42
KOG1175		626	consensus Acyl-CoA synthetase [Lipid transport and	97.41
PRK07008		539	long-chain-fatty-acid--CoA ligase; Validated	97.4
TIGR02262		508	benz_CoA_lig benzoate-CoA ligase family. Character	97.38
PRK12467		3956	peptide synthase; Provisional	97.38
PRK06188		524	acyl-CoA synthetase; Validated	97.37
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.35
PRK12467		3956	peptide synthase; Provisional	97.33
PLN02430		660	long-chain-fatty-acid-CoA ligase	97.32
PRK05691		4334	peptide synthase; Validated	97.31
PRK05851		525	long-chain-fatty-acid--[acyl-carrier-protein] liga	97.28
PRK05620		576	long-chain-fatty-acid--CoA ligase; Validated	97.28
PF00501		417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	97.26
PRK05691		4334	peptide synthase; Validated	97.22
PRK06087		547	short chain acyl-CoA synthetase; Reviewed	97.19
PRK12316		5163	peptide synthase; Provisional	97.17
PRK12582		624	acyl-CoA synthetase; Provisional	97.16
PRK06018		542	putative acyl-CoA synthetase; Provisional	97.13
TIGR01923		436	menE O-succinylbenzoate-CoA ligase. This model rep	97.11
COG1021		542	EntE Peptide arylation enzymes [Secondary metaboli	97.1
PRK12316		5163	peptide synthase; Provisional	97.04
COG1022		613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	96.96
PRK08180		614	feruloyl-CoA synthase; Reviewed	96.88
PTZ00216		700	acyl-CoA synthetase; Provisional	96.86
PRK08162		545	acyl-CoA synthetase; Validated	96.81
KOG1176		537	consensus Acyl-CoA synthetase [Lipid transport and	96.76
PRK09029		458	O-succinylbenzoic acid--CoA ligase; Provisional	96.74
PLN02479		567	acetate-CoA ligase	96.66
KOG1179		649	consensus Very long-chain acyl-CoA synthetase/fatt	96.44
TIGR02372		386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	96.21
PF14535		96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	95.2
KOG1177		596	consensus Long chain fatty acid acyl-CoA ligase [L	91.04
KOG1256		691	consensus Long-chain acyl-CoA synthetases (AMP-for	89.65
COG1020		642	EntF Non-ribosomal peptide synthetase modules and	86.41
KOG1180		678	consensus Acyl-CoA synthetase [Lipid transport and	85.74

>PLN02620 indole-3-acetic acid-amido synthetase	Back alignment and domain information

Probab=100.00  E-value=3.3e-132  Score=1089.25  Aligned_cols=549  Identities=56%  Similarity=1.003  Sum_probs=506.9

Q ss_pred             ccHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCChHHHhh-hCCCCChhhhhhcCCCccCCcchHHHHHHHhcCCCCCcc
Q 044130           10 KGEEALKEIEKLTAKADEVQNNLLREILIRNGETEYLRKY-LRGSKDVSDFKRCVPVSTYKNIYPYIQRIAISGEDSSLI   88 (565)
Q Consensus        10 ~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~n~~T~ygk~~-f~~i~~~e~Fr~~VPl~~Yed~~pyIeR~~~~Ge~~~vl   88 (565)
                      .+++.++.+|+.++||.++|+++|++||++|++|+|||+| |++|+|+++||++|||++|||++|||+||+ +||.++||
T Consensus        20 ~~~~~l~~ie~~t~~~~~vQ~~vL~~IL~~n~~Teyg~~~~f~~i~~~~~F~~~VPv~~Yedl~pyI~Ri~-~Ge~s~vL   98 (612)
T PLN02620         20 KNKKALQFIEDVTSNADEVQKRVLEEILSRNAHVEYLQRHGLNGRTDRETFKKVMPVITYEDIQPDINRIA-NGDTSPIL   98 (612)
T ss_pred             chHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHhcCCCCCCCHHHHHHhCCCccHHHhHHHHHHHH-cCCCCCcc
Confidence            3467789999999999999999999999999999999999 999999999999999999999999999999 99988999


Q ss_pred             CCcccchhhh---------hccCCC-------------------------ccccceeeccccccccCCCCcccccccccc
Q 044130           89 SGHPITEMLC---------RYICGL-------------------------DEGKAMYFYFVKAEMSTPSGLPTRTVLTSY  134 (565)
Q Consensus        89 ~~~pi~~f~~---------k~~P~~-------------------------~~gk~l~~~~~~~~~~t~~Gip~g~~s~~~  134 (565)
                      |++||.+|++         |+||++                         ..||.||+++.+.+.+|++|||+|++++++
T Consensus        99 ~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~~~~~~~~~~~~~~p~l~~Gk~~~~~~~~~~~~T~~Gip~g~~st~~  178 (612)
T PLN02620         99 CSKPISEFLTSSGTSGGERKLMPTIEEELGRRSLLYSLLMPVMSQFVPGLEKGKGMYFLFIKSEAKTPGGLVARPVLTSY  178 (612)
T ss_pred             CCCChhhhhhcCCCCCCceeeeecCHHHHHHHHHHHHHHHHHHHhhCCCcccCcEEEEEecccCccCCCCcccccccchh
Confidence            9999999999         666654                         348999999999999999999999999999


Q ss_pred             cccccccccCCCCCCcccCCcceeecCCchhhHHHHHHhhhhcCcceeEEeeecHHHHHHHHHHHHHhHHHHHHHHHccc
Q 044130          135 YKSKHFKCRTRDPYNDFTSPDPAILCNDSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQLCNDIRSGR  214 (565)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~ll~~L~~~~~v~~is~~~~~~l~~~~~~le~~w~el~~dI~~Gt  214 (565)
                      |.|..|+.++.++...|++|.++++++|+.+++||||||||.++++|..++++|+++|++++++||++|++||+||++|+
T Consensus       179 y~s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~~~Le~~w~~L~~DI~~G~  258 (612)
T PLN02620        179 YKSSHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKHWTLLCRDIRTGT  258 (612)
T ss_pred             hhhhhhhhcccccccceeCcHHhccCCCHHHHHHHHHHHHhhcchhhceEEeechHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999998888777789999999999999999999999999998999888999999999999999999999999999999


Q ss_pred             CCCCCCCccchhhhhhhcCCCChhHHHHHHHHhcCCCccccccccCCCCceEEEEEecchhhhHHHHHHhcCCCCceecc
Q 044130          215 LDLTITDPGCRSSTLSLLTSPNPTLADEIEEICSRPSWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYSAGKLPLVGT  294 (565)
Q Consensus       215 ~~~~i~~~~~r~~l~~~L~~p~p~~A~~L~~~~~~~~~~gi~~~lWP~l~~i~~~~~G~~~~y~~~l~~~~g~~~~~~~~  294 (565)
                      ++++++++++|.++.+.|+ |||++|++|+.+|++++|+||+++|||||++|+||++|+|++|++.|+.|+|+ +|+++.
T Consensus       259 ls~~itd~~~R~av~~~L~-p~pelA~~i~~~c~~~~w~gii~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gg-lpl~~~  336 (612)
T PLN02620        259 IDSQITDPSVREAVMKILK-PDPKLADFVEAECRKESWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNG-LPLVCT  336 (612)
T ss_pred             CCccCCCHHHHHHHHhhcC-CCHHHHHHHHHHhccccccCcHHHhCCCCcEEEEECCCCHHHHHHHHHHHcCC-Cccccc
Confidence            9999999999999999997 99999999999999989999999999999999999999999999999999998 999999


Q ss_pred             cccccceeeeecCCCCCCCCCceeeecCCceeEEeeeCCCCCCccccccccc-cccCCCCceeeccCcccCCeEEEEecc
Q 044130          295 MYASSECYFGVNLKPLSNPADVSFTLLPNMCYFEFLPLGGENGTLLSMEFNE-EEEVPNDKLVDLGHVRVGHYYELVVTT  373 (565)
Q Consensus       295 ~y~aSEg~~gi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~-~~~~~~~~~v~l~eve~G~~YelViTt  373 (565)
                      +|+||||+||||++|.|+|+..+|+|+|+.+||||||+++.+.....+-+-+ .++.+++++|+++|||+|++|||||||
T Consensus       337 ~Y~ASE~~~ginl~P~~~p~~~sy~L~p~~~yFEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt  416 (612)
T PLN02620        337 MYASSECYFGVNLNPLCKPSEVSYTLIPTMAYFEFLPVHRNNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTT  416 (612)
T ss_pred             cccccceEEEeccCCCCCcccceeeecCCcEEEEEeeccCcccccccccccccccccccCccccHHHccCCCeEEEEEEe
Confidence            9999999999999999999999999999999999999885321000000000 012345779999999999999999999


Q ss_pred             ccceeeeecCCEEEEeeeeCCCCEEEEEeecCceeeeeecccCHHHHHHHHHHHHhhcccCCCeEEeEEEeecCCCCCce
Q 044130          374 FAGLNRYRIGDVLQVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTSTVPGH  453 (565)
Q Consensus       374 ~~GLyRYriGDvV~v~gf~~~~P~i~F~gR~~~~l~i~GEkl~e~~v~~av~~~~~~l~~~g~~l~~f~~~~d~~~~p~~  453 (565)
                      .+||||||+||||+|+||||++|+|+|+||.+.++||+|||++|++|+.||.+|...|.+.+++|+|||+++|.++.|||
T Consensus       417 ~~GLyRYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a~~~l~~~~~~l~dyts~~d~~~~Pgh  496 (612)
T PLN02620        417 YAGLYRYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDASLTEYTSYADTSTIPGH  496 (612)
T ss_pred             cCceEEEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHHHHhhcccCceeeeEEeccccCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999998886678999999999999899999


Q ss_pred             eEEEEEEEecCCCCCCCChHHHHHHHHHHHHHHhChHHHHhhccCCccCCeEEEEeCCCcHHHHHHHHHhcCCCCCCCCC
Q 044130          454 YVLYWEIQIVDSPALPLDHQKVLEECCIAVEEQLDYVYRRCRSHDKSVGPLEIRVVEPGTFETLMDLLVSQGGSINQYKT  533 (565)
Q Consensus       454 Y~l~~e~e~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~Q~K~  533 (565)
                      |+||||+...+.  .+++ .+++++||..||++||.+|+.+|..+++|+|++|++|++|||+.++++++++|++.+|||+
T Consensus       497 Yvl~~El~~~~~--~~~~-~~~l~~cc~~lE~~Ln~~Yr~~R~~~~sIgPLeirvv~~GtF~~l~~~~~~~G~s~~QyK~  573 (612)
T PLN02620        497 YVLFWELCLNGS--TPIP-PSVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAISLGASINQYKT  573 (612)
T ss_pred             eEEEEEEecCCC--CCCC-HHHHHHHHHHHHHHhCHHHHHHHhcCCcCCCcEEEEeCCChHHHHHHHHHHcCCccccccC
Confidence            999999952221  1234 6789999999999999999999976556999999999999999999999999999999999


Q ss_pred             CcccCCChHHHHHHhccccceeccCCCCCCCC
Q 044130          534 PRCIKSNNAALMLLDSHVKDSFFSPRDPKWIP  565 (565)
Q Consensus       534 Pr~~~~~~~~~~~L~~~~~~~~~s~~~~~~~~  565 (565)
                      |||++ +++++++|+++|+++|||+++|.|.|
T Consensus       574 Pr~v~-~~~~~~~l~~~v~~~~~s~~~~~~~~  604 (612)
T PLN02620        574 PRCVK-FAPIIELLNSRVVSNYFSPKCPKWVP  604 (612)
T ss_pred             ceEec-CHHHHHHHHhhhheeeccccCCCCCc
Confidence            99999 99999999999999999999999987

>PLN02247 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PLN02249 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin	Back alignment and domain information

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]	Back alignment and domain information

>TIGR03335 F390_ftsA coenzyme F390 synthetase	Back alignment and domain information

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase	Back alignment and domain information

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme	Back alignment and domain information

>PRK00174 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PTZ00237 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06060 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase	Back alignment and domain information

>PRK03584 acetoacetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07514 malonyl-CoA synthase; Validated	Back alignment and domain information

>PRK09274 peptide synthase; Provisional	Back alignment and domain information

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK10524 prpE propionyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK04319 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK09088 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed	Back alignment and domain information

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07867 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1	Back alignment and domain information

>PRK07788 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02574 4-coumarate--CoA ligase-like	Back alignment and domain information

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase	Back alignment and domain information

>PRK05852 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR03205 pimA dicarboxylate--CoA ligase PimA	Back alignment and domain information

>TIGR01733 AA-adenyl-dom amino acid adenylation domain	Back alignment and domain information

>PRK07529 AMP-binding domain protein; Validated	Back alignment and domain information

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06145 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional	Back alignment and domain information

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional	Back alignment and domain information

>PLN02654 acetate-CoA ligase	Back alignment and domain information

>TIGR02316 propion_prpE propionate--CoA ligase	Back alignment and domain information

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase	Back alignment and domain information

>PRK07638 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06164 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK06839 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK13383 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02246 4-coumarate--CoA ligase	Back alignment and domain information

>PRK08316 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK12583 acyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase	Back alignment and domain information

>PLN02330 4-coumarate--CoA ligase-like 1	Back alignment and domain information

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK13382 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional	Back alignment and domain information

>PRK13390 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07470 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PLN02614 long-chain acyl-CoA synthetase	Back alignment and domain information

>PRK13391 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN03051 acyl-activating enzyme; Provisional	Back alignment and domain information

>PLN02860 o-succinylbenzoate-CoA ligase	Back alignment and domain information

>PRK13388 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK08315 AMP-binding domain protein; Validated	Back alignment and domain information

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated	Back alignment and domain information

>PRK05850 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed	Back alignment and domain information

>PRK10946 entE enterobactin synthase subunit E; Provisional	Back alignment and domain information

>PRK07868 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02736 long-chain acyl-CoA synthetase	Back alignment and domain information

>PRK10252 entF enterobactin synthase subunit F; Provisional	Back alignment and domain information

>PRK08308 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase	Back alignment and domain information

>PRK07787 acyl-CoA synthetase; Validated	Back alignment and domain information

>PTZ00342 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN03052 acetate--CoA ligase; Provisional	Back alignment and domain information

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PLN02861 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PRK08279 long-chain-acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK12476 putative fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK07798 acyl-CoA synthetase; Validated	Back alignment and domain information

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]	Back alignment and domain information

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06178 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK09192 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated	Back alignment and domain information

>PLN02387 long-chain-fatty-acid-CoA ligase family protein	Back alignment and domain information

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PLN03102 acyl-activating enzyme; Provisional	Back alignment and domain information

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated	Back alignment and domain information

>PRK05857 acyl-CoA synthetase; Validated	Back alignment and domain information

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PRK06188 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PLN02430 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>PRK06087 short chain acyl-CoA synthetase; Reviewed	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PRK12582 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06018 putative acyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR01923 menE O-succinylbenzoate-CoA ligase	Back alignment and domain information

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	Back alignment and domain information

>PRK08180 feruloyl-CoA synthase; Reviewed	Back alignment and domain information

>PTZ00216 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK08162 acyl-CoA synthetase; Validated	Back alignment and domain information

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PLN02479 acetate-CoA ligase	Back alignment and domain information

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]	Back alignment and domain information

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family	Back alignment and domain information

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B	Back alignment and domain information

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]	Back alignment and domain information

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]	Back alignment and domain information

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		565
4b2g_A		609	Crystal Structure Of An Indole-3-acetic Acid Amido		1e-167
4ewv_A		581	Crystal Structure Of Gh3.12 In Complex With Ampcpp		1e-148
4eq4_A		581	Crystal Structure Of Seleno-Methionine Derivatized		1e-143
4epl_A		581	Crystal Structure Of Arabidopsis Thaliana Gh3.11 (J		3e-93

>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido Synthase From Vitis Vinifera Involved In Auxin Homeostasis Length = 609

Back alignment and structure

Iteration: 1

Score = 585 bits (1509), Expect = e-167, Method: Compositional matrix adjust. Identities = 309/603 (51%), Positives = 395/603 (65%), Gaps = 61/603 (10%) Query: 4 GKKLEYKGEEALKEIEKLTAKADEVQNNLLREILIRNGETEYLRKY-LRGSKDVSDFKRC 62 G K +AL+ IE++T AD VQ +L EIL RNGETEYL+++ L GS FK Sbjct: 12 GPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTVRETFKSK 71 Query: 63 VPVSTYKNIYPYIQRIAISGEDSSLISGHPITEMLCR----------------------- 99 +PV Y+++ P IQRIA +G+ S+++S HPI+E L Sbjct: 72 IPVIKYEDLQPEIQRIA-NGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQM 130 Query: 100 -----------YICGLDEGKAMYFYFVKAEMSTPSGLPTRTVLTSYYKSKHFKCRTRDPY 148 Y+ GLD+GK +YF FVK+E TP GL R VLTSYYKS+HFK R DPY Sbjct: 131 LYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSEHFKTRPYDPY 190 Query: 149 NDFTSPDPAILCNDSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQLCN 208 N +TSP+ AILC DS QSMY Q+L G+ R QVLRLGAVFAS LLRAI FL+ NW QL + Sbjct: 191 NVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTH 250 Query: 209 DIRSGRLDLTITDPGCRXXXXXXXXXXXXXXADEIEEICSRPSWKGILCQLWPRAKYIEA 268 DIR+G L ITDP R AD + CS+ +W+GI+ ++WP KY++ Sbjct: 251 DIRTGTLSPKITDPSVR-NCVAGVLKPDPELADLVAGECSKDNWEGIITRIWPNTKYLDV 309 Query: 269 VVTGSMAQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLKPLSNPADVSFTLLPNMCYFE 328 +VTG+MAQYIP+L+YYS G LPL TMYASSECYFG+NL P+S P++VS+T++PNM YFE Sbjct: 310 IVTGAMAQYIPTLDYYSGG-LPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFE 368 Query: 329 FLPLGGENGTLLSMEFNEEEEVP-----NDKLVDLGHVRVGHYYELVVTTFAGLNRYRIG 383 FLP +E +P +LVDL HV VG YELV+TT+AGL RYR+G Sbjct: 369 FLP-------------HEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYAGLYRYRVG 415 Query: 384 DVLQVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTS 443 D+L+VTGF+N APQF F+ R+NV+LSID+DKT+E +L K+V A LL + +VEYTS Sbjct: 416 DILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTS 475 Query: 444 YADTSTVPGHYVLYWEIQIVDSPALPLDHQKVLEECCIAVEEQLDYVYRRCRSHDKSVGP 503 +ADT T+PGHYV+YWE+ + DS P D ++L +CC+A+EE L+ VYR+ R D S+GP Sbjct: 476 FADTKTIPGHYVIYWELLVKDSANSPSD--ELLGQCCLAMEESLNSVYRQGRVADNSIGP 533 Query: 504 LEIRVVEPGTFETLMDLLVSQGGSINQYKTPRCIKSNNAALM-LLDSHVKDSFFSPRDPK 562 LEIRVV+ GTFE LMD +S+G SINQYK PRC+ N +M LLDS V S FSP P Sbjct: 534 LEIRVVKSGTFEELMDYAISRGASINQYKVPRCV--NFTPIMELLDSRVVSSHFSPALPH 591 Query: 563 WIP 565 W P Sbjct: 592 WTP 594

PyMOL of 4b2g

>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp Length = 581

Back alignment and structure

>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12 Length = 581

Back alignment and structure

>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In Complex With Ja-Ile Length = 581

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		565
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	1e-140
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	1e-136
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Length = 581	Back alignment and structure

 Score =  417 bits (1071), Expect = e-140
 Identities = 276/595 (46%), Positives = 369/595 (62%), Gaps = 56/595 (9%)

Query: 1   MHYGKKLEYKGEEALKEIEKLTAKADEVQNNLLREILIRNGETEYLRKYLRGSKDVSDFK 60
           M   K +    E   K+++ LT+    +Q+NLL EI+  N +TEYL+++L    D   FK
Sbjct: 4   MASMKPIFDINETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFLIDRFDKELFK 63

Query: 61  RCVPVSTYKNIYPYIQRIAISGEDSSLISGHPITEMLC---------------------- 98
           + VP+ +Y++I PY+ R+  +GE S +IS   IT  L                       
Sbjct: 64  KNVPIVSYEDIKPYLDRVV-NGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNL 122

Query: 99  ------------RYICGLDEGKAMYFYFVKAEMSTPSGLPTRTVLTSYYKSKHFKCRTRD 146
                       +++ G++EGK M F F K E  TPSGLP R   +SY+KS +FK R  +
Sbjct: 123 TFIYDLRMQVITKHVKGVEEGKGMMFLFTKQESMTPSGLPARVATSSYFKSDYFKNRPSN 182

Query: 147 PYNDFTSPDPAILCNDSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQL 206
            Y  +TSPD  ILC ++ +S+YC LL GL+ R +V+R G++FAS ++RAI  L+ +W +L
Sbjct: 183 WYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEEL 242

Query: 207 CNDIRSGRLDLTITDPGCRSSTLSLLTSPNPTLADEIEEICSRPSWKGILCQLWPRAKYI 266
           C++IRSG L   +TD GC++S   +L  P P LAD IEEIC++ SWKGI+ +LWP  KYI
Sbjct: 243 CSNIRSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYI 302

Query: 267 EAVVTGSMAQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLKPLSNPADVSFTLLPNMCY 326
           E VVTGSM QY+P L YY    LPLV T Y SSE  FG+NL PL  P DVS+T +PNM Y
Sbjct: 303 ETVVTGSMGQYVPMLNYY-CNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSY 361

Query: 327 FEFLPLGGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTFAGLNRYRIGDVL 386
           FEF+P+               +    + +VDL  V++G  YE VVT FAGL R R+GD++
Sbjct: 362 FEFIPM---------------DGGDKNDVVDLEDVKLGCTYEPVVTNFAGLYRMRVGDIV 406

Query: 387 QVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYAD 446
            VTGFYN APQF+F+ R NVVLSID+DKTNEEDL K+V+ AK +LE     L ++TSYAD
Sbjct: 407 LVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYAD 466

Query: 447 TSTVPGHYVLYWEIQIVDSPALPLDH----QKVLEECCIAVEEQLDYVYRRCRSHDKSVG 502
           TST PGHYV+Y E+   +            ++ L  CC+ +EE LD VY+RCR  D S+G
Sbjct: 467 TSTFPGHYVVYLEVDTKEGEEKETAQFELDEEALSTCCLVMEESLDNVYKRCRFKDGSIG 526

Query: 503 PLEIRVVEPGTFETLMDLLVSQGGSINQYKTPRCIKSNNAALMLLDSHVKDSFFS 557
           PLEIRVV  GTF++LMD  +SQG S  QYKTPRCIK +  AL +L++ V   FFS
Sbjct: 527 PLEIRVVRQGTFDSLMDFFISQGASTGQYKTPRCIK-SGKALQVLETCVVAKFFS 580

PyMOL of 4eql

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Length = 581	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		565
4b2g_A		609	GH3-1 auxin conjugating enzyme; signaling protein,	100.0
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	100.0
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	100.0
3qov_A		436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.43
2y4o_A		443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.36
2y27_A		437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.14
3etc_A		580	AMP-binding protein; adenylate-forming acyl-COA sy	98.55
3e7w_A		511	D-alanine--poly(phosphoribitol) ligase subunit 1;	98.42
2v7b_A		529	Benzoate-coenzyme A ligase; benzoate oxidation, be	98.38
2d1s_A		548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	98.37
3ni2_A		536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	98.37
1t5h_X		504	4-chlorobenzoyl COA ligase; adenylate-forming coen	98.37
4fuq_A		503	Malonyl COA synthetase; ANL superfamily, methylma	98.37
3fce_A		512	D-alanine--poly(phosphoribitol) ligase subunit 1;	98.32
3ivr_A		509	Putative long-chain-fatty-acid COA ligase; structu	98.31
3rix_A		550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	98.29
3nyq_A		505	Malonyl-COA ligase; A/B topology ababa sandwich be	98.22
3l8c_A		521	D-alanine--poly(phosphoribitol) ligase subunit 1;	98.21
1pg4_A		652	Acetyl-COA synthetase; AMP-forming, adenylate-form	98.2
3g7s_A		549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	98.19
3c5e_A		570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	98.16
3ite_A		562	SIDN siderophore synthetase; ligase, non-ribosomal	98.16
3o83_A		544	Peptide arylation enzyme; ligase, adenylation of 2	98.11
3rg2_A		617	Enterobactin synthase component E (ENTE), 2,3-DIH	98.11
1mdb_A		539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	98.11
1ry2_A		663	Acetyl-coenzyme A synthetase 1, acyl-activating en	98.08
3kxw_A		590	Saframycin MX1 synthetase B; fatty acid AMP ligase	98.06
4gs5_A		358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	98.05
3r44_A		517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	98.03
3gqw_A		576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	98.0
4dg8_A		620	PA1221; ANL superfamily, adenylation domain, pepti	97.99
1amu_A		563	GRSA, gramicidin synthetase 1; peptide synthetase,	97.98
3tsy_A		979	Fusion protein 4-coumarate--COA ligase 1, resvera	97.96
4gr5_A		570	Non-ribosomal peptide synthetase; MBTH-like domain	97.96
3ipl_A		501	2-succinylbenzoate--COA ligase; structural genomic	97.87
1v25_A		541	Long-chain-fatty-acid-COA synthetase; ligase, stru	97.7
2vsq_A		1304	Surfactin synthetase subunit 3; ligase, peptidyl c	97.6
3hgu_A		369	EHPF; phenazine, antibiotic, biosynthetic protein;	97.53
3lax_A		109	Phenylacetate-coenzyme A ligase; structural genomi	96.37
3gxs_A		109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	96.24
3t5a_A		480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	91.6

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}	Back alignment and structure

Probab=100.00  E-value=2.6e-128  Score=1069.77  Aligned_cols=545  Identities=55%  Similarity=0.962  Sum_probs=492.6

Q ss_pred             cccccHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCChHHHhh-hCCCCChhhhhhcCCCccCCcchHHHHHHHhcCCCC
Q 044130            7 LEYKGEEALKEIEKLTAKADEVQNNLLREILIRNGETEYLRKY-LRGSKDVSDFKRCVPVSTYKNIYPYIQRIAISGEDS   85 (565)
Q Consensus         7 ~~~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~n~~T~ygk~~-f~~i~~~e~Fr~~VPl~~Yed~~pyIeR~~~~Ge~~   85 (565)
                      ....+++.++.||+.++||.++|+++|++||++|++|+|||+| |++|+|++||+++|||++|||++|||+||+ +||.+
T Consensus        15 ~~~~~~~~l~~~e~~~~~~~~~Q~~~L~~lL~~~~~T~~gr~~gf~~i~~~~dF~~~VPv~~Yedl~p~ieRi~-~Ge~~   93 (609)
T 4b2g_A           15 ASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTVRETFKSKIPVIKYEDLQPEIQRIA-NGDRS   93 (609)
T ss_dssp             -CHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSTTSHHHHTTCCTTCCSHHHHHHHSCCBCHHHHHHHHHHHH-TTCCS
T ss_pred             cccchHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCChHHHhcCCCCCCCHHHHHHhCCCccHHHHHHHHHHHh-cCCCC
Confidence            4566788899999999999999999999999999999999999 999999999999999999999999999999 99988


Q ss_pred             CccCCcccchhhh---------hccCCCc-------------------------cccceeeccccccccCCCCccccccc
Q 044130           86 SLISGHPITEMLC---------RYICGLD-------------------------EGKAMYFYFVKAEMSTPSGLPTRTVL  131 (565)
Q Consensus        86 ~vl~~~pi~~f~~---------k~~P~~~-------------------------~gk~l~~~~~~~~~~t~~Gip~g~~s  131 (565)
                      +|||++||.+|++         |+||++.                         .||+|++.+.+.+.+|++|+|+|++|
T Consensus        94 ~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t~~Gi~~g~~s  173 (609)
T 4b2g_A           94 AILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVL  173 (609)
T ss_dssp             SSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHHHHHHHHHHHHHHHHSCCGGGSEEEECCCCCCCEECTTSCEEECHH
T ss_pred             CccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHHHHHHHHHHHHHHhcCCcccCCCeEEEcccCCcccCCCCcccccch
Confidence            9999999999988         6666543                         37899998888889999999999999


Q ss_pred             ccccccccccccCCCCCCcccCCcceeecCCchhhHHHHHHhhhhcCcceeEEeeecHHHHHHHHHHHHHhHHHHHHHHH
Q 044130          132 TSYYKSKHFKCRTRDPYNDFTSPDPAILCNDSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQLCNDIR  211 (565)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~ll~~L~~~~~v~~is~~~~~~l~~~~~~le~~w~el~~dI~  211 (565)
                      +.++++.+|+++|.++...|++|.++++++|+.+++||||||||.+++++++|+++|++++++++++|+++|++||+||+
T Consensus       174 ~~~~~s~~f~~~p~~~~~~~~sP~~~i~~~D~~~~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~~~~L~~~Weel~~dI~  253 (609)
T 4b2g_A          174 TSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTHDIR  253 (609)
T ss_dssp             HHHHTSHHHHTCCCCTTCCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccchhhccccchhhcccCcHHHhcCcCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCccchhhhhhhcCCCChhHHHHHHHHhcCCCccccccccCCCCceEEEEEecchhhhHHHHHHhcCCCCce
Q 044130          212 SGRLDLTITDPGCRSSTLSLLTSPNPTLADEIEEICSRPSWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYSAGKLPL  291 (565)
Q Consensus       212 ~Gt~~~~i~~~~~r~~l~~~L~~p~p~~A~~L~~~~~~~~~~gi~~~lWP~l~~i~~~~~G~~~~y~~~l~~~~g~~~~~  291 (565)
                      +||++++|+++++|+++++.++ |||++|++|+++|++++|.|++++|||||++|+||++|+|++|+++|++|+|+ +|+
T Consensus       254 ~gtl~~~it~~~~r~a~~~~ls-p~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~~~~Y~~~l~~~~g~-~p~  331 (609)
T 4b2g_A          254 TGTLSPKITDPSVRNCVAGVLK-PDPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAMAQYIPTLDYYSGG-LPL  331 (609)
T ss_dssp             HTCCCTTCCCHHHHHHTTTTCC-CCHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGGGGGGHHHHHHHHTS-CCE
T ss_pred             hccCCcCCCCHHHHHHHhcCCC-cCHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCChHHHHHHHHHHcCC-Ccc
Confidence            9999999999999999999998 99999999999999988999999999999999999999999999999999988 999


Q ss_pred             ecccccccceeeeecCCCCCCCCCceeeecCCceeEEeeeCCCCCCccccccccccccCCCCceeeccCcccCCeEEEEe
Q 044130          292 VGTMYASSECYFGVNLKPLSNPADVSFTLLPNMCYFEFLPLGGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVV  371 (565)
Q Consensus       292 ~~~~y~aSEg~~gi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelVi  371 (565)
                      ++++|+||||+||+|++|.|+|+..+|+|+|+.+||||||+++.+..        ..+.+++++|+++|||+|++|||||
T Consensus       332 ~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~--------~~~~~~~~~v~l~eVe~G~~YelVi  403 (609)
T 4b2g_A          332 ACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIP--------LSRDSPPRLVDLAHVEVGKEYELVI  403 (609)
T ss_dssp             ECCEEECSSCEEEECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSC--------CCSSSCCCCEEGGGCCTTCEEEEEE
T ss_pred             ccCcccccceeeeeecCCCCCcccCceeecCCcEEEEEEeccccccc--------cccCCCCccccHhHcCCCCeEEEeh
Confidence            99999999999999999999998899999999999999998864100        0023568999999999999999999


Q ss_pred             ccccceeeeecCCEEEEeeeeCCCCEEEEEeecCceeeeeecccCHHHHHHHHHHHHhhcccCCCeEEeEEEeecCCCCC
Q 044130          372 TTFAGLNRYRIGDVLQVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTSTVP  451 (565)
Q Consensus       372 Tt~~GLyRYriGDvV~v~gf~~~~P~i~F~gR~~~~l~i~GEkl~e~~v~~av~~~~~~l~~~g~~l~~f~~~~d~~~~p  451 (565)
                      ||++||||||+||+|+|+|||+++|+|+|+||++++||++|||++|++|++||.+|++.|+++|+.|.|||+++|.++.|
T Consensus       404 Tt~~GL~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p  483 (609)
T 4b2g_A          404 TTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIP  483 (609)
T ss_dssp             ECTTSCCSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSS
T ss_pred             hhhhhhhheecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999988878999999999999988899


Q ss_pred             ceeEEEEEEEecCCCCCCCChHHHHHHHHHHHHHHhChHHHHhhccCCccCCeEEEEeCCCcHHHHHHHHHhcCCCCCCC
Q 044130          452 GHYVLYWEIQIVDSPALPLDHQKVLEECCIAVEEQLDYVYRRCRSHDKSVGPLEIRVVEPGTFETLMDLLVSQGGSINQY  531 (565)
Q Consensus       452 ~~Y~l~~e~e~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~Q~  531 (565)
                      +||+||||++..+.. ..++ .+++++||..||++||++|+.+|.++|+|+||+|++|++|+|++|+++++++|+++||+
T Consensus       484 ~Hyv~~wEl~~~~~~-~~~~-~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~v~~v~~GtF~~~~~~~~~~G~~~gQ~  561 (609)
T 4b2g_A          484 GHYVIYWELLVKDSA-NSPS-DELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGASINQY  561 (609)
T ss_dssp             CEEEEEEEEEESCGG-GCCC-HHHHHHHHHHHHHHSCHHHHHHHHTSCCSCCCEEEEECTTCSCC---------------
T ss_pred             CcEEEEEEEeccccc-CCCC-HHHHHHHHHHHHHHhCHHHHHHhhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCCCc
Confidence            999999999741100 1233 67899999999999999999999666799999999999999999999999999999999


Q ss_pred             CCCcccCCChHHHHHHhccccceeccCCCCCCCC
Q 044130          532 KTPRCIKSNNAALMLLDSHVKDSFFSPRDPKWIP  565 (565)
Q Consensus       532 K~Pr~~~~~~~~~~~L~~~~~~~~~s~~~~~~~~  565 (565)
                      |+|||++ +++++++|+++||++|||+++|.|.|
T Consensus       562 K~PR~~~-~~~~~~~L~~~v~~~~~s~~~~~~~~  594 (609)
T 4b2g_A          562 KVPRCVN-FTPIMELLDSRVVSSHFSPALPHWTP  594 (609)
T ss_dssp             -CCSSCC---CCHHHHHTTEEEEEECCSCCCCCS
T ss_pred             CCCcccC-CHHHHHHHHhcccccccCCCCCCCCc
Confidence            9999999 99999999999999999999999987

PyMOL of 4b2g

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*	Back alignment and structure

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}	Back alignment and structure

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*	Back alignment and structure

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}	Back alignment and structure

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*	Back alignment and structure

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}	Back alignment and structure

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*	Back alignment and structure

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}	Back alignment and structure

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*	Back alignment and structure

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*	Back alignment and structure

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*	Back alignment and structure

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*	Back alignment and structure

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*	Back alignment and structure

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0	Back alignment and structure

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A	Back alignment and structure

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*	Back alignment and structure

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*	Back alignment and structure

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*	Back alignment and structure

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}	Back alignment and structure

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*	Back alignment and structure

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}	Back alignment and structure

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*	Back alignment and structure

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}	Back alignment and structure

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A	Back alignment and structure

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1	Back alignment and structure

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*	Back alignment and structure

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}	Back alignment and structure

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A	Back alignment and structure

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*	Back alignment and structure

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1	Back alignment and structure

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}	Back alignment and structure

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A	Back alignment and structure

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}	Back alignment and structure

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*	Back alignment and structure

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}	Back alignment and structure

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*	Back alignment and structure

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}	Back alignment and structure

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		565
d1pg4a_		643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	98.01
d1lcia_		541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	98.0
d1amua_		514	Phenylalanine activating domain of gramicidin synt	97.97
d1ry2a_		640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	97.17
d3cw9a1		503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	96.95
d1mdba_		536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	96.85
d1v25a_		534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	96.83

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=98.01  E-value=3.1e-05  Score=84.23  Aligned_cols=130  Identities=12%  Similarity=0.055  Sum_probs=81.3

Q ss_pred             EEEEEecch---hhhHHHHHHhcC-CCCceeccccccccee-eee-cCCCC--CCCCCceeeecCCceeEEeeeCCCCCC
Q 044130          266 IEAVVTGSM---AQYIPSLEYYSA-GKLPLVGTMYASSECY-FGV-NLKPL--SNPADVSFTLLPNMCYFEFLPLGGENG  337 (565)
Q Consensus       266 i~~~~~G~~---~~y~~~l~~~~g-~~~~~~~~~y~aSEg~-~gi-~~~~~--~~~~~~~~~l~p~~~ffEFip~~~~~~  337 (565)
                      |..+.+||.   ......+.+.+| .+++++ .+||.||+. +.+ +....  ..++..+. .+|+.. ...++.+    
T Consensus       376 Lr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~-~~yG~TE~g~~~~~~~~~~~~~~~gs~G~-p~~g~~-v~ivd~~----  448 (643)
T d1pg4a_         376 LRILGSVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPGAIELKAGSATR-PFFGVQ-PALVDNE----  448 (643)
T ss_dssp             CCEEEEESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTTTCCBCTTCCBS-BCTTCC-EEEECTT----
T ss_pred             eEEEEEEeCCCCHHHHHHHHHHhCCCCceEE-EeechhhccceEEecCCCccCCCCCcccc-ccCCCE-EEEECCC----
Confidence            444555552   344566666664 338888 999999963 221 11110  01111222 223322 2333321    


Q ss_pred             ccccccccccccCCCCceeeccCcccCCeEEEEeccc-----ccee----------------eeecCCEEEEeeeeCCCC
Q 044130          338 TLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTF-----AGLN----------------RYRIGDVLQVTGFYNRAP  396 (565)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~-----~GLy----------------RYriGDvV~v~gf~~~~P  396 (565)
                                     .+     +++.|+.+||+|+..     .|+|                -|++||++++..    --
T Consensus       449 ---------------g~-----~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----dG  504 (643)
T d1pg4a_         449 ---------------GH-----PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE----DG  504 (643)
T ss_dssp             ---------------CC-----BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT----TS
T ss_pred             ---------------CC-----CCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECC----Cc
Confidence                           12     255899999999863     2332                277999999863    23


Q ss_pred             EEEEEeecCceeeeeecccCHHHHHHHHHH
Q 044130          397 QFRFICRRNVVLSIDNDKTNEEDLHKSVTI  426 (565)
Q Consensus       397 ~i~F~gR~~~~l~i~GEkl~e~~v~~av~~  426 (565)
                      .+.|+||.++++++.|++++..+|+++|.+
T Consensus       505 ~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~  534 (643)
T d1pg4a_         505 YYWITGRVDDVLNVSGHRLGTAEIESALVA  534 (643)
T ss_dssp             CEEEEEESSSEEEETTEEEEHHHHHHHHHH
T ss_pred             eEEEecccccEEEECCEEECHHHHHHHHHh
Confidence            799999999999999999999999999965

PyMOL of d1pg4a_

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}	Back information, alignment and structure

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}	Back information, alignment and structure

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}	Back information, alignment and structure

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure