Citrus Sinensis ID: 044131
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 784 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SUH6 | 792 | Pentatricopeptide repeat- | yes | no | 0.987 | 0.977 | 0.673 | 0.0 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.978 | 0.948 | 0.385 | 1e-162 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.954 | 0.908 | 0.372 | 1e-153 | |
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | no | no | 0.982 | 0.914 | 0.350 | 1e-149 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.951 | 0.859 | 0.380 | 1e-148 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.868 | 0.981 | 0.384 | 1e-147 | |
| Q9CAY1 | 623 | Putative pentatricopeptid | no | no | 0.766 | 0.964 | 0.426 | 1e-145 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.984 | 0.886 | 0.359 | 1e-144 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.834 | 0.886 | 0.374 | 1e-142 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.966 | 0.891 | 0.352 | 1e-142 |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1103 bits (2852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/777 (67%), Positives = 631/777 (81%), Gaps = 3/777 (0%)
Query: 8 SRNLFLSLLKGAKTQSQLTQTHAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSI 67
S+N +L K + + S L QTHAQII+HGF+ND+S +TKL RLSD A YAR +F S+
Sbjct: 19 SKNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSV 78
Query: 68 PKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIG 127
+PD+FLFNV++RGFS NE P SS+ + HLRK+T L P++ TY+F +SAAS D G
Sbjct: 79 QRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAG 138
Query: 128 VLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKN 187
++HG A+V G S+L +G+ +V +YFKF V+ ARKVFD+MPEKDT+LWN+MISG KN
Sbjct: 139 RVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKN 198
Query: 188 CCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYV 247
+ +SI VF D++ T LD+T++ +LPAVAE+QELRLGM+I L K G + H YV
Sbjct: 199 EMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYV 258
Query: 248 LTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAE 307
LTG +S YSKCG+++ LFR+ +PD+++ NAMI GYT NG+TE SL LF++L+ S
Sbjct: 259 LTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGA 318
Query: 308 RVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARK 367
R+ SST+V L+PV GHL L IH +CLKS +S++SV TAL+TVYS+LNE+E+ARK
Sbjct: 319 RLRSSTLVSLVPVS---GHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARK 375
Query: 368 LFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGA 427
LFDES EKSL SWNAMI+GYTQNGLTE+AISLF+EMQ S+ +PNPVT++ ILSACAQLGA
Sbjct: 376 LFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGA 435
Query: 428 ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISG 487
+SLGKWVH+LV+S +FES+IYVSTALI MYAKCG+I EAR LFDLM+ K+EVTWNTMISG
Sbjct: 436 LSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISG 495
Query: 488 YGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP 547
YGLHG G EAL +F EML+SGI P+ VTFL VLYACSHAGLV+EGDEIF SMIH +GF+P
Sbjct: 496 YGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEP 555
Query: 548 LAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKL 607
+HYACMVDILGRAG L++AL+FI+ +++EPG +VW LLGAC IHKDTNLAR SEKL
Sbjct: 556 SVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKL 615
Query: 608 FELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSG 667
FELDP+NVGYHVLLSNI+SA+R+Y QAATVRQ KKRKLAKAPG TLIE+G TPHVFTSG
Sbjct: 616 FELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSG 675
Query: 668 DQLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMMKVHSEKLAIAFGLI 727
DQ HPQ IY LEKL GKMREAG+Q ET ALHDVEEEE+ELM+KVHSE+LAIAFGLI
Sbjct: 676 DQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLI 735
Query: 728 ATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
ATEPGTEIRIIKNLRVCLDCHT TK ISK+T RVIVVRDANRFHHFK GVCSCGDYW
Sbjct: 736 ATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 573 bits (1477), Expect = e-162, Method: Compositional matrix adjust.
Identities = 297/770 (38%), Positives = 454/770 (58%), Gaps = 3/770 (0%)
Query: 15 LLKGAKTQSQLTQTHAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSIPKPDLFL 74
LL+ + +L Q + +G + TKL + + A +F I L
Sbjct: 43 LLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVL 102
Query: 75 FNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHA 134
++ +++GF+ ++ F+ +R + + P + ++++L + +G +HG
Sbjct: 103 YHTMLKGFAKVSDLDKALQFFVRMRYDD-VEPVVYNFTYLLKVCGDEAELRVGKEIHGLL 161
Query: 135 IVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSI 194
+ SG+ DLF L ++Y K V ARKVFD+MPE+D V WN++++G +N + ++
Sbjct: 162 VKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMAL 221
Query: 195 WVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSF 254
+ M ++ +VLPAV+ ++ + +G EI ++ GF V + T LV
Sbjct: 222 EMVKSMCEEN-LKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDM 280
Query: 255 YSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTI 314
Y+KCG +E A LF ++ +++S N+MI Y N + ++ +F+++L + ++
Sbjct: 281 YAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSV 340
Query: 315 VGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSE 374
+G + G L IH ++ G+ N SV+ +L ++Y + E++ A +F +
Sbjct: 341 MGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQS 400
Query: 375 KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWV 434
++L SWNAMI G+ QNG +A++ F +M++ V P+ T S+++A A+L KW+
Sbjct: 401 RTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWI 460
Query: 435 HELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHG 494
H +V + N++V+TAL+DMYAKCG I+ AR +FD+MS + TWN MI GYG HG G
Sbjct: 461 HGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFG 520
Query: 495 LEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYAC 554
AL+LF EM I+P+GVTFLSV+ ACSH+GLV G + F M ++ + +HY
Sbjct: 521 KAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGA 580
Query: 555 MVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPEN 614
MVD+LGRAG+L +A +FI + V+P V+GA+LGAC IHK+ N A A+E+LFEL+P++
Sbjct: 581 MVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDD 640
Query: 615 VGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQS 674
GYHVLL+NIY A + + VR + ++ L K PGC+++E+ H F SG HP S
Sbjct: 641 GGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDS 700
Query: 675 TAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMMKVHSEKLAIAFGLIATEPGTE 734
IYA LEKL ++EAG+ +T L VE + KE ++ HSEKLAI+FGL+ T GT
Sbjct: 701 KKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTT 759
Query: 735 IRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
I + KNLRVC DCH ATK+IS VTGR IVVRD RFHHFK G CSCGDYW
Sbjct: 760 IHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 544 bits (1401), Expect = e-153, Method: Compositional matrix adjust.
Identities = 282/758 (37%), Positives = 443/758 (58%), Gaps = 10/758 (1%)
Query: 29 HAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSIPKPDLFLFNVIIRGFSNNEMP 88
HA++++ ++ KL + AR F I D++ +N++I G+
Sbjct: 74 HARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNS 133
Query: 89 KSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAA 148
I ++ ++ LTPD T+ VL A D G +H A+ G+ D++V A+
Sbjct: 134 SEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAAS 190
Query: 149 LVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWL 208
L+ LY ++ V +AR +FD+MP +D WN+MISG ++ ++++ + NG +
Sbjct: 191 LIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL-----TLSNGLRAM 245
Query: 209 DSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLF 268
DS +V ++L A E + G+ I +K G ++V L+ Y++ G + + +F
Sbjct: 246 DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVF 305
Query: 269 RDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLH 328
+ DLIS N++I Y N + ++ LF+++ S + + T++ L + G +
Sbjct: 306 DRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIR 365
Query: 329 LTNCIHSFCLKSG-IVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGY 387
+ F L+ G + + ++ A+ +Y++L +++AR +F+ + SWN +I+GY
Sbjct: 366 ACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGY 425
Query: 388 TQNGLTEEAISLFQEMQAS-KVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESN 446
QNG EAI ++ M+ ++A N T S+L AC+Q GA+ G +H + +
Sbjct: 426 AQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLD 485
Query: 447 IYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLH 506
++V T+L DMY KCG + +A LF + + V WNT+I+ +G HGHG +A+ LF EML
Sbjct: 486 VFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLD 545
Query: 507 SGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLE 566
G++P +TF+++L ACSH+GLV EG F+ M D+G P +HY CMVD+ GRAGQLE
Sbjct: 546 EGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLE 605
Query: 567 KALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYS 626
AL+FIK ++++P ++WGALL AC +H + +L ++ASE LFE++PE+VGYHVLLSN+Y+
Sbjct: 606 TALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYA 665
Query: 627 AERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNG 686
+ + +R + + L K PG + +EV VF +G+Q HP +Y L L
Sbjct: 666 SAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQA 725
Query: 687 KMREAGFQTETVTALHDVEEEEKELMMKVHSEKLAIAFGLIATEPGTEIRIIKNLRVCLD 746
K++ G+ + L DVE++EKE ++ HSE+LAIAF LIAT T IRI KNLRVC D
Sbjct: 726 KLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGD 785
Query: 747 CHTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
CH+ TKFISK+T R I+VRD+NRFHHFK GVCSCGDYW
Sbjct: 786 CHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 528 bits (1361), Expect = e-149, Method: Compositional matrix adjust.
Identities = 283/807 (35%), Positives = 456/807 (56%), Gaps = 37/807 (4%)
Query: 14 SLLKGAKTQSQLTQTHAQIIIHGFQNDLSTVTKLAHR---LSDFKATCYARALF-FSIPK 69
S LK KT +L H + G ND+ST+TKL R L ++ +A+ +F S
Sbjct: 37 SSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESY 96
Query: 70 PDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVL 129
F++N +IRG++++ + +I + + N+ ++PD +T+ F LSA + + G+
Sbjct: 97 GTCFMYNSLIRGYASSGLCNEAILLFLRM-MNSGISPDKYTFPFGLSACAKSRAKGNGIQ 155
Query: 130 LHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCC 189
+HG + GY DLFV +LV Y + + SARKVFD+M E++ V W SMI G +
Sbjct: 156 IHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDF 215
Query: 190 FQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLT 249
+D++ +F MVR+ +S ++ V+ A A++++L G ++ G + +++
Sbjct: 216 AKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVS 275
Query: 250 GLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERV 309
LV Y KC ++ A+ LF + +L CNAM S Y G T +L +F ++ S R
Sbjct: 276 ALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRP 335
Query: 310 NSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLF 369
+ +++ I ++ H + L++G S ++ AL +Y + + + A ++F
Sbjct: 336 DRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIF 395
Query: 370 DESSEKSLASWNAMIAGYTQNG-------------------------------LTEEAIS 398
D S K++ +WN+++AGY +NG L EEAI
Sbjct: 396 DRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIE 455
Query: 399 LFQEMQASK-VAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMY 457
+F MQ+ + V + VT+ SI SAC LGA+ L KW++ ++ + ++ + T L+DM+
Sbjct: 456 VFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMF 515
Query: 458 AKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFL 517
++CG+ A +F+ ++++ W I + G+ A++LF +M+ G++P GV F+
Sbjct: 516 SRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFV 575
Query: 518 SVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAV 577
L ACSH GLV++G EIF SM+ HG P HY CMVD+LGRAG LE+A++ I+ + +
Sbjct: 576 GALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPM 635
Query: 578 EPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATV 637
EP +W +LL AC + + +A A+EK+ L PE G +VLLSN+Y++ + A V
Sbjct: 636 EPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKV 695
Query: 638 RQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTET 697
R +K++ L K PG + I++ G H FTSGD+ HP+ I AML++++ + G +
Sbjct: 696 RLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDL 755
Query: 698 VTALHDVEEEEKELMMKVHSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKV 757
L DV+E+EK M+ HSEKLA+A+GLI++ GT IRI+KNLRVC DCH+ KF SKV
Sbjct: 756 SNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKV 815
Query: 758 TGRVIVVRDANRFHHFKGGVCSCGDYW 784
R I++RD NRFH+ + G CSCGD+W
Sbjct: 816 YNREIILRDNNRFHYIRQGKCSCGDFW 842
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 525 bits (1352), Expect = e-148, Method: Compositional matrix adjust.
Identities = 292/767 (38%), Positives = 438/767 (57%), Gaps = 21/767 (2%)
Query: 27 QTHAQIIIHGFQNDLSTVTKLAH---RLSDFKATCYARALFFSIPKPDLFLFNVIIRGFS 83
Q H Q I GF +D+S T L + S+FK R +F + + ++ + +I G++
Sbjct: 114 QLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKD---GRKVFDEMKERNVVTWTTLISGYA 170
Query: 84 NNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDL 143
N M + + + +N P++FT++ L + G+ +H + +G +
Sbjct: 171 RNSMNDEVLTLFMRM-QNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTI 229
Query: 144 FVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRN 203
V +L++LY K V+ AR +FDK K V WNSMISG N +++ +F M R
Sbjct: 230 PVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSM-RL 288
Query: 204 GGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVER 263
L +S A+V+ A ++ELR ++ C +K GF + T L+ YSKC +
Sbjct: 289 NYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLD 348
Query: 264 AELLFRDI-VRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNS---STIVGLIP 319
A LF++I +++S AMISG+ N E ++ LF ++ R N S I+ +P
Sbjct: 349 ALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALP 408
Query: 320 VFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLAS 379
V P + +H+ +K+ +S+V TAL Y +L ++E A K+F +K + +
Sbjct: 409 VISP-------SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVA 461
Query: 380 WNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGA-ISLGKWVHELV 438
W+AM+AGY Q G TE AI +F E+ + PN T SSIL+ CA A + GK H
Sbjct: 462 WSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFA 521
Query: 439 KSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEAL 498
+S++ VS+AL+ MYAK GNI A E+F K V+WN+MISGY HG ++AL
Sbjct: 522 IKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKAL 581
Query: 499 QLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDI 558
+F EM ++ GVTF+ V AC+HAGLV EG++ F M+ D P EH +CMVD+
Sbjct: 582 DVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDL 641
Query: 559 LGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYH 618
RAGQLEKA++ I+ + G +W +L AC +HK T L R+A+EK+ + PE+ +
Sbjct: 642 YSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAY 701
Query: 619 VLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIY 678
VLLSN+Y+ D+ + A VR+++ +R + K PG + IEV + F +GD+ HP IY
Sbjct: 702 VLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIY 761
Query: 679 AMLEKLNGKMREAGFQTETVTALHDVEEEEKELMMKVHSEKLAIAFGLIATEPGTEIRII 738
LE L+ ++++ G++ +T L D+++E KE ++ HSE+LAIAFGLIAT G+ + II
Sbjct: 762 MKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLII 821
Query: 739 KNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKG-GVCSCGDYW 784
KNLRVC DCH K I+K+ R IVVRD+NRFHHF GVCSCGD+W
Sbjct: 822 KNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 522 bits (1344), Expect = e-147, Method: Compositional matrix adjust.
Identities = 265/689 (38%), Positives = 407/689 (59%), Gaps = 8/689 (1%)
Query: 98 LRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFS 157
L N+ + D+F S + SA + I H +V G F+ L+ F
Sbjct: 12 LYTNSGIHSDSFYASLIDSATHKAQLKQI----HARLLVLGLQFSGFLITKLIHASSSFG 67
Query: 158 WVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVL 217
+ AR+VFD +P WN++I G +N FQD++ ++ +M + DS + +L
Sbjct: 68 DITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNM-QLARVSPDSFTFPHLL 126
Query: 218 PAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPD-- 275
A + + L++G + +LGF V+V GL++ Y+KC + A +F + P+
Sbjct: 127 KACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERT 186
Query: 276 LISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHS 335
++S A++S Y NG+ +L +F Q+ + + +V ++ F L IH+
Sbjct: 187 IVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHA 246
Query: 336 FCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEE 395
+K G+ +L +L+T+Y++ ++ A+ LFD+ +L WNAMI+GY +NG E
Sbjct: 247 SVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYARE 306
Query: 396 AISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALID 455
AI +F EM V P+ ++++S +SACAQ+G++ + ++E V ++ ++++S+ALID
Sbjct: 307 AIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALID 366
Query: 456 MYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVT 515
M+AKCG++ AR +FD + V W+ MI GYGLHG EA+ L+ M G+ P+ VT
Sbjct: 367 MFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVT 426
Query: 516 FLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL 575
FL +L AC+H+G+VREG F M DH P +HYAC++D+LGRAG L++A E IK +
Sbjct: 427 FLGLLMACNHSGMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCM 485
Query: 576 AVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAA 635
V+PG VWGALL AC H+ L A+++LF +DP N G++V LSN+Y+A R + + A
Sbjct: 486 PVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVA 545
Query: 636 TVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQT 695
VR +K++ L K GC+ +EV G F GD+ HP+ I +E + +++E GF
Sbjct: 546 EVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVA 605
Query: 696 ETVTALHDVEEEEKELMMKVHSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFIS 755
+LHD+ +EE E + HSE++AIA+GLI+T GT +RI KNLR C++CH ATK IS
Sbjct: 606 NKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLIS 665
Query: 756 KVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
K+ R IVVRD NRFHHFK GVCSCGDYW
Sbjct: 666 KLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 516 bits (1328), Expect = e-145, Method: Compositional matrix adjust.
Identities = 260/610 (42%), Positives = 385/610 (63%), Gaps = 9/610 (1%)
Query: 177 WNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLG 236
WN + L F +SI ++ M+R+G + D+ S +L + A + G ++ C
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSS-PDAFSFPFILKSCASLSLPVSGQQLHCHV 79
Query: 237 LKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISC--NAMISGYTCNGKTES 294
K G +VLT L+S Y KCG V A +F + + +S NA+ISGYT N K
Sbjct: 80 TKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTD 139
Query: 295 SLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALST 354
+ +FR++ + V+S T++GL+P+ +L L +H C+K G+ S +VL + T
Sbjct: 140 AAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFIT 199
Query: 355 VYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVT 414
+Y + +EA R+LFDE K L +WNA+I+GY+QNGL + + L+++M++S V P+P T
Sbjct: 200 MYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFT 259
Query: 415 VSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS 474
+ S+LS+CA LGA +G V +LV+S F N++VS A I MYA+CGN+ +AR +FD+M
Sbjct: 260 LVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMP 319
Query: 475 HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDE 534
KS V+W MI YG+HG G L LF +M+ GIRP G F+ VL ACSH+GL +G E
Sbjct: 320 VKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLE 379
Query: 535 IFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIH 594
+F++M ++ +P EHY+C+VD+LGRAG+L++A+EFI+ + VEP AVWGALLGAC IH
Sbjct: 380 LFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIH 439
Query: 595 KDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTL 654
K+ ++A +A K+ E +P N+GY+VL+SNIYS ++ +R ++++R K PG +
Sbjct: 440 KNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSY 499
Query: 655 IEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMMK 714
+E G H+F +GD+ H Q+ ++ ML++L + E + EE +
Sbjct: 500 VEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNMDCDRG------EEVSSTTR 553
Query: 715 VHSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFK 774
HSE+LAIAFG++ + PGTEI +IKNLRVC DCH K +SK+ R VVRDA+RFH+FK
Sbjct: 554 EHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFK 613
Query: 775 GGVCSCGDYW 784
GVCSC DYW
Sbjct: 614 DGVCSCKDYW 623
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 514 bits (1323), Expect = e-144, Method: Compositional matrix adjust.
Identities = 282/785 (35%), Positives = 445/785 (56%), Gaps = 13/785 (1%)
Query: 6 PQSRNLFLSLLKGAKTQSQLTQTHAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFF 65
P++ L L +K+ + I +GF D + +KL+ ++ A +F
Sbjct: 94 PRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFD 153
Query: 66 SIPKPDLFLFNVIIRGFSNNEMPKS-----SICFYTHLRKNTALTPDNFTYSFVLSAASA 120
+ +N+++ NE+ KS SI + + ++ + D++T+S V + S+
Sbjct: 154 EVKIEKALFWNILM-----NELAKSGDFSGSIGLFKKM-MSSGVEMDSYTFSCVSKSFSS 207
Query: 121 CCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSM 180
G LHG + SG+G VG +LV Y K V SARKVFD+M E+D + WNS+
Sbjct: 208 LRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSI 267
Query: 181 ISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLG 240
I+G + N + + VF M+ +G +D ++ +V A+ + + LG + +G+K
Sbjct: 268 INGYVSNGLAEKGLSVFVQMLVSG-IEIDLATIVSVFAGCADSRLISLGRAVHSIGVKAC 326
Query: 241 FHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFR 300
F L+ YSKCG+++ A+ +FR++ ++S +MI+GY G +++LF
Sbjct: 327 FSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFE 386
Query: 301 QLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLN 360
++ + T+ ++ + L +H + ++ + + V AL +Y++
Sbjct: 387 EMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCG 446
Query: 361 EMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEM-QASKVAPNPVTVSSIL 419
M+ A +F E K + SWN +I GY++N EA+SLF + + + +P+ TV+ +L
Sbjct: 447 SMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVL 506
Query: 420 SACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEV 479
ACA L A G+ +H + + S+ +V+ +L+DMYAKCG ++ A LFD ++ K V
Sbjct: 507 PACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLV 566
Query: 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSM 539
+W MI+GYG+HG G EA+ LF++M +GI ++F+S+LYACSH+GLV EG F M
Sbjct: 567 SWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIM 626
Query: 540 IHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNL 599
H+ +P EHYAC+VD+L R G L KA FI+ + + P +WGALL C IH D L
Sbjct: 627 RHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKL 686
Query: 600 ARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGG 659
A +EK+FEL+PEN GY+VL++NIY+ + Q +R+ + +R L K PGC+ IE+ G
Sbjct: 687 AEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKG 746
Query: 660 TPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMMKVHSEK 719
++F +GD +P++ I A L K+ +M E G+ T AL D EE EKE + HSEK
Sbjct: 747 RVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEK 806
Query: 720 LAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKGGVCS 779
LA+A G+I++ G IR+ KNLRVC DCH KF+SK+T R IV+RD+NRFH FK G CS
Sbjct: 807 LAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCS 866
Query: 780 CGDYW 784
C +W
Sbjct: 867 CRGFW 871
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 507 bits (1306), Expect = e-142, Method: Compositional matrix adjust.
Identities = 258/689 (37%), Positives = 400/689 (58%), Gaps = 35/689 (5%)
Query: 131 HGHAIVSGYGSDLFVGAALVDL--YFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNC 188
HGH I +G SD + + L + F+ ++ ARKVFD++P+ ++ WN++I
Sbjct: 50 HGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGP 109
Query: 189 CFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVL 248
SIW F DMV + + + ++ A AEV L LG + + +K V+V
Sbjct: 110 DPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVA 169
Query: 249 TGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAER 308
L+ Y CG+++ A +F I D++S N+MI+G+ G + +L LF+++ + +
Sbjct: 170 NSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVK 229
Query: 309 VNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKL 368
+ T+VG++ +L + S+ ++ + N ++ A+ +Y++ +E A++L
Sbjct: 230 ASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRL 289
Query: 369 FDESSEKS-------------------------------LASWNAMIAGYTQNGLTEEAI 397
FD EK + +WNA+I+ Y QNG EA+
Sbjct: 290 FDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEAL 349
Query: 398 SLFQEMQASK-VAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDM 456
+F E+Q K + N +T+ S LSACAQ+GA+ LG+W+H +K N +V++ALI M
Sbjct: 350 IVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHM 409
Query: 457 YAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTF 516
Y+KCG++ ++RE+F+ + + W+ MI G +HG G EA+ +F +M + ++P+GVTF
Sbjct: 410 YSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTF 469
Query: 517 LSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA 576
+V ACSH GLV E + +F M ++G P +HYAC+VD+LGR+G LEKA++FI+ +
Sbjct: 470 TNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMP 529
Query: 577 VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAAT 636
+ P +VWGALLGAC IH + NLA +A +L EL+P N G HVLLSNIY+ + +
Sbjct: 530 IPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSE 589
Query: 637 VRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTE 696
+R+ ++ L K PGC+ IE+ G H F SGD HP S +Y L ++ K++ G++ E
Sbjct: 590 LRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPE 649
Query: 697 TVTALHDVEEEE-KELMMKVHSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFIS 755
L +EEEE KE + +HSEKLAI +GLI+TE IR+IKNLRVC DCH+ K IS
Sbjct: 650 ISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLIS 709
Query: 756 KVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
++ R I+VRD RFHHF+ G CSC D+W
Sbjct: 710 QLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 504 bits (1299), Expect = e-142, Method: Compositional matrix adjust.
Identities = 289/819 (35%), Positives = 453/819 (55%), Gaps = 61/819 (7%)
Query: 20 KTQSQLTQTHAQIIIHGFQNDLSTVTKLAHRLSDFKAT---CYARALFFSIPKPD--LFL 74
KT SQ+ H +++ G + T+ +H +S + + +A +L P D ++
Sbjct: 39 KTISQVKLIHQKLLSFG----ILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYH 94
Query: 75 FNVIIRGFSNNEMPKSSICFYTH-LRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGH 133
+N +IR + +N ++ C Y L + + TPDN+T+ FV A G H
Sbjct: 95 WNSLIRSYGDNGC--ANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHAL 152
Query: 134 AIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDS 193
++V+G+ S++FVG ALV +Y + + ARKVFD+M D V WNS+I K + +
Sbjct: 153 SLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVA 212
Query: 194 IWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVS 253
+ +F M G D+ ++ VLP A + LG ++ C + +++V LV
Sbjct: 213 LEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVD 272
Query: 254 FYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLF-------------- 299
Y+KCG ++ A +F ++ D++S NAM++GY+ G+ E ++RLF
Sbjct: 273 MYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVT 332
Query: 300 ---------------------RQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCL 338
RQ+L+S + N T++ ++ G L IH + +
Sbjct: 333 WSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAI 392
Query: 339 K-------SGIVSNSSVLTALSTVYSRLNEMEAARKLFDESS--EKSLASWNAMIAGYTQ 389
K +G + V+ L +Y++ +++ AR +FD S E+ + +W MI GY+Q
Sbjct: 393 KYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQ 452
Query: 390 NGLTEEAISLFQEM--QASKVAPNPVTVSSILSACAQLGAISLGKWVHEL-VKSRNFESN 446
+G +A+ L EM + + PN T+S L ACA L A+ +GK +H ++++
Sbjct: 453 HGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVP 512
Query: 447 IYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLH 506
++VS LIDMYAKCG+I +AR +FD M K+EVTW ++++GYG+HG+G EAL +F EM
Sbjct: 513 LFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRR 572
Query: 507 SGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLE 566
G + GVT L VLYACSH+G++ +G E F M G P EHYAC+VD+LGRAG+L
Sbjct: 573 IGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLN 632
Query: 567 KALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYS 626
AL I+ + +EP P VW A L C IH L A+EK+ EL + G + LLSN+Y+
Sbjct: 633 AALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYA 692
Query: 627 AERDYLQAATVRQVVKKRKLAKAPGCTLIE-VGGTPHVFTSGDQLHPQSTAIYAMLEKLN 685
+ +R +++ + + K PGC+ +E + GT F GD+ HP + IY +L
Sbjct: 693 NAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFV-GDKTHPHAKEIYQVLLDHM 751
Query: 686 GKMREAGFQTETVTALHDVEEEEKELMMKVHSEKLAIAFGLIATEPGTEIRIIKNLRVCL 745
++++ G+ ET ALHDV++EEK+ ++ HSEKLA+A+G++ T G IRI KNLRVC
Sbjct: 752 QRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCG 811
Query: 746 DCHTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
DCHTA ++S++ I++RD++RFHHFK G CSC YW
Sbjct: 812 DCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 784 | ||||||
| 225445812 | 781 | PREDICTED: pentatricopeptide repeat-cont | 0.985 | 0.989 | 0.741 | 0.0 | |
| 356564895 | 778 | PREDICTED: pentatricopeptide repeat-cont | 0.984 | 0.992 | 0.705 | 0.0 | |
| 357479991 | 783 | Pentatricopeptide repeat-containing prot | 0.985 | 0.987 | 0.696 | 0.0 | |
| 449470293 | 788 | PREDICTED: pentatricopeptide repeat-cont | 0.989 | 0.984 | 0.695 | 0.0 | |
| 449507535 | 788 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.989 | 0.984 | 0.695 | 0.0 | |
| 297798898 | 792 | pentatricopeptide repeat-containing prot | 0.987 | 0.977 | 0.676 | 0.0 | |
| 15234831 | 792 | pentatricopeptide repeat-containing prot | 0.987 | 0.977 | 0.673 | 0.0 | |
| 224091821 | 605 | predicted protein [Populus trichocarpa] | 0.767 | 0.995 | 0.765 | 0.0 | |
| 297743669 | 726 | unnamed protein product [Vitis vinifera] | 0.914 | 0.987 | 0.650 | 0.0 | |
| 413952892 | 787 | hypothetical protein ZEAMMB73_780855 [Ze | 0.968 | 0.964 | 0.528 | 0.0 |
| >gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1177 bits (3045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 576/777 (74%), Positives = 667/777 (85%), Gaps = 4/777 (0%)
Query: 8 SRNLFLSLLKGAKTQSQLTQTHAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSI 67
+RNLFL+L+ T QL QTHAQII++G NDL TVTKL H+LS KA A LF +I
Sbjct: 9 TRNLFLTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTI 68
Query: 68 PKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIG 127
P PDLFL+NV+IR FS N P S++ YTHLRK+T L PDNFTY+FV+S AS+ +G
Sbjct: 69 PNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASS---LGLG 125
Query: 128 VLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKN 187
+LLH H+IV+G+GSDLFVG+A+V YFKFS V +ARKVFD M E+DTVLWN+M+SGL+KN
Sbjct: 126 LLLHAHSIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKN 185
Query: 188 CCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYV 247
CF ++I +FGDMV+ GG DST+VAAVLP VAE+Q+L LGM IQCL +K+GFH H YV
Sbjct: 186 SCFDEAILIFGDMVK-GGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYV 244
Query: 248 LTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAE 307
+TGL YSKCGE+E A LLF I +PDL+S NAMISGYTCN +TESS+RLF++LL S E
Sbjct: 245 ITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGE 304
Query: 308 RVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARK 367
+VNSS+IVGLIPVF+PFGHLHLT CIH FC KSG+VSNSSV TAL+TVYSRLNE+E+AR
Sbjct: 305 KVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARL 364
Query: 368 LFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGA 427
LFDESSEKSLASWNAMI+GY QNGLTE+AISLFQEMQ +V PNPVTV+SILSACAQLGA
Sbjct: 365 LFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGA 424
Query: 428 ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISG 487
+SLGKWVH+L+ +FESNI+VSTALIDMYAKCG+I EA+ LF +M K+ VTWN MISG
Sbjct: 425 LSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISG 484
Query: 488 YGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP 547
YGLHG+G EAL LF+EMLHS + P+GVTFLSVLYACSHAGLVREGDEIF+SM+HDHGF+P
Sbjct: 485 YGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEP 544
Query: 548 LAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKL 607
L EHYACMVD+LGRAG L+KAL+FI+ + VEPGP VWGALLGACMIHKD NLAR+AS+KL
Sbjct: 545 LPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKL 604
Query: 608 FELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSG 667
FELDP+NVGY+VLLSNIYSA ++Y +AA+VR VVK+RKLAK PGCTLIEV T H+FTSG
Sbjct: 605 FELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSG 664
Query: 668 DQLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMMKVHSEKLAIAFGLI 727
DQ HPQ+TAIYAMLEKL GKMREAGFQTET TALHDVEEEEKELM+KVHSEKLAIAFGLI
Sbjct: 665 DQSHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLI 724
Query: 728 ATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
+EPGTEIRIIKNLRVCLDCH ATKFISK+T RVIVVRDANRFHHFK G+CSCGDYW
Sbjct: 725 TSEPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 781
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1150 bits (2974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/777 (70%), Positives = 653/777 (84%), Gaps = 5/777 (0%)
Query: 8 SRNLFLSLLKGAKTQSQLTQTHAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSI 67
SRN L+L+ A T L +THAQ+I +G+Q+DL+TVTKL +L D AT +ARALFFS+
Sbjct: 7 SRNTLLALISKACTFPHLAETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSV 66
Query: 68 PKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIG 127
PKPD+FLFNV+I+GFS + SSI FYTHL KNT L+PDNFTY+F +SA+ D ++G
Sbjct: 67 PKPDIFLFNVLIKGFSFSP-DASSISFYTHLLKNTTLSPDNFTYAFAISASP---DDNLG 122
Query: 128 VLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKN 187
+ LH HA+V G+ S+LFV +ALVDLY KFS V ARKVFDKMP++DTVLWN+MI+GL++N
Sbjct: 123 MCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRN 182
Query: 188 CCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYV 247
CC+ DS+ VF DMV G LDST+VA VLPAVAE+QE+++GM IQCL LKLGFH YV
Sbjct: 183 CCYDDSVQVFKDMVAQG-VRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYV 241
Query: 248 LTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAE 307
LTGL+S +SKC +V+ A LLF I +PDL+S NA+ISG++CNG+TE +++ FR+LL S +
Sbjct: 242 LTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQ 301
Query: 308 RVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARK 367
RV+SST+VGLIPV PFGHLHL CI FC+KSG + SV TAL+T+YSRLNE++ AR+
Sbjct: 302 RVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQ 361
Query: 368 LFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGA 427
LFDESSEK++A+WNAMI+GY Q+GLTE AISLFQEM ++ PNPVT++SILSACAQLGA
Sbjct: 362 LFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGA 421
Query: 428 ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISG 487
+S GK VH+L+KS+N E NIYVSTALIDMYAKCGNI EA +LFDL S K+ VTWNTMI G
Sbjct: 422 LSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFG 481
Query: 488 YGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP 547
YGLHG+G EAL+LF+EMLH G +PS VTFLSVLYACSHAGLVREGDEIF +M++ + +P
Sbjct: 482 YGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEP 541
Query: 548 LAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKL 607
LAEHYACMVDILGRAGQLEKALEFI+ + VEPGPAVWG LLGACMIHKDTNLARVASE+L
Sbjct: 542 LAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERL 601
Query: 608 FELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSG 667
FELDP NVGY+VLLSNIYS ER++ +AA+VR+ VKKR L+K PGCTLIEV GTPHVF G
Sbjct: 602 FELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCG 661
Query: 668 DQLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMMKVHSEKLAIAFGLI 727
D+ H Q+T+IYA LE+L GKMRE G+Q+ETVTALHDVEEEEKELM VHSEKLAIAFGLI
Sbjct: 662 DRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEEEKELMFNVHSEKLAIAFGLI 721
Query: 728 ATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
TEPGTEIRIIKNLRVCLDCH ATKFISK+T RVIVVRDANRFHHFK G+CSCGDYW
Sbjct: 722 TTEPGTEIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 778
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1134 bits (2934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/777 (69%), Positives = 644/777 (82%), Gaps = 4/777 (0%)
Query: 8 SRNLFLSLLKGAKTQSQLTQTHAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSI 67
SRN SL+ A T L QTHAQ I++G++ DL+T+TKL +L DF AT +ARALFFS+
Sbjct: 11 SRNTLFSLINKASTFPHLAQTHAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSV 70
Query: 68 PKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIG 127
PKPD+FLFNV++RGFS N+ P SSI YTHLR+NT L+PDNFTY+F A +AC +
Sbjct: 71 PKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAF---AVAACSNDKHL 127
Query: 128 VLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKN 187
+LLH H+I+ GYGS++FVG+ALVDLY KFS V ARKVFD MPE+DTVLWN+MI+GL+KN
Sbjct: 128 MLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKN 187
Query: 188 CCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYV 247
CCF DSI +F +MV +G +DS++V AVLPA AE+QEL++GM IQCL LK+GF YV
Sbjct: 188 CCFDDSIQLFREMVADG-VRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYV 246
Query: 248 LTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAE 307
LTGL+S YSKCG+V A LLFR I RPDLI+ NAMISG+T NG TE S++LFR+LL S E
Sbjct: 247 LTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGE 306
Query: 308 RVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARK 367
RV+SSTIVGLIP+ PFGHLHL IH FC+KSGI+ N +V TA + +Y++LNE++ AR
Sbjct: 307 RVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARH 366
Query: 368 LFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGA 427
LFDES EK++ +WNAMI+GYTQNG TE AISLF+EM ++ PN VT+++ILSACAQLG+
Sbjct: 367 LFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGS 426
Query: 428 ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISG 487
+S GKWVH L+KS N E NIYVSTAL+DMYAKCGNI EA +LFD MS K+ VTWNTMI G
Sbjct: 427 LSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFG 486
Query: 488 YGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP 547
YGLHG+G EAL+L++EMLH G PS VTFLSVLYACSHAGLV EG+EIF +M++ + +P
Sbjct: 487 YGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEP 546
Query: 548 LAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKL 607
L EHYACMVDILGR+GQLEKALEFIK + VEPGPAVWG LLGACMIHKDT++AR+ASE+L
Sbjct: 547 LIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERL 606
Query: 608 FELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSG 667
FELDP +VGY+VLLSNIYS ER++ +AA++RQVVKKRKLAK+PGCTLIEV GTPHVF SG
Sbjct: 607 FELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSG 666
Query: 668 DQLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMMKVHSEKLAIAFGLI 727
D+ H +T IYA LEKL GKMRE G+Q ETV ALHDVEEEEKEL + VHSEKLAIAFGLI
Sbjct: 667 DRSHSHATDIYAKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVNVHSEKLAIAFGLI 726
Query: 728 ATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
TEPG EIRIIKNLRVCLDCHTATKFISK+T RVIVVRDANRFHHFK G+CSCGDYW
Sbjct: 727 TTEPGNEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 783
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1133 bits (2930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/779 (69%), Positives = 644/779 (82%), Gaps = 3/779 (0%)
Query: 7 QSRNLFLSLLKGAKTQSQLTQTHAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFS 66
+ + FL+LL A T SQL Q AQ+I+HG DLS++TKL H+ D A + R LF
Sbjct: 12 RGQRFFLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNK 71
Query: 67 IPKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSI 126
+ KPDLFLFNV+IRGFS+N +PKSSI YTHLRK T L PDNFTY+F +SAAS D +
Sbjct: 72 VSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERV 131
Query: 127 GVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMK 186
GVLLH H+IV G S+LFVG+A+VDLYFKF+ + ARKVFD MPE+DTVLWN+MISG +
Sbjct: 132 GVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSR 191
Query: 187 NCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVY 246
N F+DSI VF DM+ + G DST++A VL AVAE+QE RLGM IQCL K G H VY
Sbjct: 192 NSYFEDSIRVFVDML-DVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVY 250
Query: 247 VLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASA 306
VLTGL+S YSKCG+ + +LF I +PDLIS NAMISGYT N +TES++ LFR+LLAS
Sbjct: 251 VLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG 310
Query: 307 ERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAAR 366
+RVNSST+VGLIPV+ PF HL L+ I + LK GI+ SV TAL+TVY RLNE++ AR
Sbjct: 311 QRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFAR 370
Query: 367 KLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLG 426
+LFDES EKSLASWNAMI+GYTQNGLT+ AISLFQEM +++PNPVTV+SILSACAQLG
Sbjct: 371 QLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLG 429
Query: 427 AISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMIS 486
A+S+GKWVH L+KS ESN+YVSTAL+DMYAKCG+IVEAR+LFDLM K+ VTWN MI+
Sbjct: 430 ALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMIT 489
Query: 487 GYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFK 546
GYGLHGHG EAL+LF EML SGI P+GVTFLS+LYACSH+GLV EG+EIF SM +++GF+
Sbjct: 490 GYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQ 549
Query: 547 PLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEK 606
P++EHYACMVDILGRAGQL ALEFI+ + +EPGPAVWGALLGACMIHK+T +A VAS++
Sbjct: 550 PMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKR 609
Query: 607 LFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTS 666
LF+LDPENVGY+VLLSNIYS +R++ +AA+VRQVVKKRKLAK PGCTLIE+ +VFTS
Sbjct: 610 LFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTS 669
Query: 667 GDQLHPQSTAIYAMLEKLNGKMREAGFQTETV-TALHDVEEEEKELMMKVHSEKLAIAFG 725
GD+ HPQ+TAI+ MLEKL GKMREAG+Q ETV TALHDVE+EEKELM+ VHSEKLAIAFG
Sbjct: 670 GDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFG 729
Query: 726 LIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
LI+T+PGTEIRIIKNLRVCLDCHTATKFISK+T RVIVVRDANRFHHFK G+CSCGDYW
Sbjct: 730 LISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g30700-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1132 bits (2929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/779 (69%), Positives = 644/779 (82%), Gaps = 3/779 (0%)
Query: 7 QSRNLFLSLLKGAKTQSQLTQTHAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFS 66
+ + FL+LL A T SQL Q AQ+I+HG DLS++TKL H+ D A + R LF
Sbjct: 12 RGQRFFLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNK 71
Query: 67 IPKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSI 126
+ KPDLFLFNV+IRGFS+N +PKSSI YTHLRK T L PDNFTY+F +SAAS D +
Sbjct: 72 VSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERV 131
Query: 127 GVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMK 186
GVLLH H+IV G S+LFVG+A+VDLYFKF+ + ARKVFD MPE+DTVLWN+MISG +
Sbjct: 132 GVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSR 191
Query: 187 NCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVY 246
N F+DSI VF DM+ + G DST++A VL AVAE+QE RLGM IQCL K G H VY
Sbjct: 192 NSYFEDSIRVFVDML-DVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVY 250
Query: 247 VLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASA 306
VLTGL+S YSKCG+ + +LF I +PDLIS NAMISGYT N +TES++ LFR+LLAS
Sbjct: 251 VLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG 310
Query: 307 ERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAAR 366
+RVNSST+VGLIPV+ PF HL L+ I + LK GI+ SV TAL+TVY RLNE++ AR
Sbjct: 311 QRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFAR 370
Query: 367 KLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLG 426
+LFDES EKSLASWNAMI+GYTQNGLT+ AISLFQEM +++PNPVTV+SILSACAQLG
Sbjct: 371 QLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLG 429
Query: 427 AISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMIS 486
A+S+GKWVH L+KS ESN+YVSTAL+DMYAKCG+IVEAR+LFDLM K+ VTWN MI+
Sbjct: 430 ALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMIT 489
Query: 487 GYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFK 546
GYGLHGHG EAL+LF EML SGI P+GVTFLS+LYACSH+GLV EG+EIF SM +++GF+
Sbjct: 490 GYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQ 549
Query: 547 PLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEK 606
P++EHYACMVDILGRAGQL ALEFI+ + +EPGPAVWGALLGACMIHK+T +A VAS++
Sbjct: 550 PMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKR 609
Query: 607 LFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTS 666
LF+LDPENVGY+VLLSNIYS +R++ +AA+VRQVVKKRKLAK PGCTLIE+ +VFTS
Sbjct: 610 LFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTS 669
Query: 667 GDQLHPQSTAIYAMLEKLNGKMREAGFQTETV-TALHDVEEEEKELMMKVHSEKLAIAFG 725
GD+ HPQ+TAI+ MLEKL GKMREAG+Q ETV TALHDVE+EEKELM+ VHSEKLAIAFG
Sbjct: 670 GDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFG 729
Query: 726 LIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
LI+T+PGTEIRIIKNLRVCLDCHTATKFISK+T RVIVVRDANRFHHFK G+CSCGDYW
Sbjct: 730 LISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1104 bits (2855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/777 (67%), Positives = 634/777 (81%), Gaps = 3/777 (0%)
Query: 8 SRNLFLSLLKGAKTQSQLTQTHAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSI 67
S+N FL L K + + S L QTHAQI++HGF+ND+S +TKL RLSD A YAR +F S+
Sbjct: 19 SKNNFLDLFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSV 78
Query: 68 PKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIG 127
+PD+FLFNV++RGFS NE P SS+ + HLRK+T L P++ TY+F +SAAS D G
Sbjct: 79 QRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAG 138
Query: 128 VLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKN 187
++HG AIV G S+L +G+ +V +YFKF V+ ARKVFD+MPEKDT+LWN+MISG KN
Sbjct: 139 CVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKN 198
Query: 188 CCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYV 247
+ +SI VF D++ T LD+T++ +LPAVAE+QELRLGM+I L K G + H YV
Sbjct: 199 EMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYV 258
Query: 248 LTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAE 307
LTG +S YSKCG+++ A LFR+ RPD+++ NAMI GYT NG+TE SL LF++L+ S
Sbjct: 259 LTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGA 318
Query: 308 RVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARK 367
++ SST+V L+PV GHL L IH + LKS +S++SV TAL+TVYS+LNE+E+ARK
Sbjct: 319 KLKSSTLVSLVPVS---GHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARK 375
Query: 368 LFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGA 427
LFDES EKSL SWNAMI+GYTQNGLTE+AISLF+EMQ S+ +PNPVT++ ILSACAQLGA
Sbjct: 376 LFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGA 435
Query: 428 ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISG 487
+SLGKWVH+LV+S +FES+IYVSTALI MYAKCG+I EAR LFD M K+EVTWNTMISG
Sbjct: 436 LSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISG 495
Query: 488 YGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP 547
YGLHGHG EAL +FSEML+SGI P+ VTFL VLYACSHAGLV+EGDEIF SMIH +GF+P
Sbjct: 496 YGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEP 555
Query: 548 LAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKL 607
+HYAC+VDILGRAG L++AL+FI+ + ++PGP+VW LLGAC IHKDTNLAR SEKL
Sbjct: 556 SVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKL 615
Query: 608 FELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSG 667
FELDP+NVGYHVLLSNI+SA+R+Y QAATVRQ KKRKLAKAPG TLIE+G TPHVFTSG
Sbjct: 616 FELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSG 675
Query: 668 DQLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMMKVHSEKLAIAFGLI 727
DQ HPQ AI+ LEKL GKMREAG+Q ET ALHDVEEEE+ELM+KVHSE+LAIAFGLI
Sbjct: 676 DQSHPQVKAIHEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLI 735
Query: 728 ATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
ATEPGTEIRIIKNLRVCLDCHTATK ISK+T RVIVVRDANRFHHFK GVCSCGDYW
Sbjct: 736 ATEPGTEIRIIKNLRVCLDCHTATKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g30700; AltName: Full=Protein DYW9 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana] gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana] gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1103 bits (2852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/777 (67%), Positives = 631/777 (81%), Gaps = 3/777 (0%)
Query: 8 SRNLFLSLLKGAKTQSQLTQTHAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSI 67
S+N +L K + + S L QTHAQII+HGF+ND+S +TKL RLSD A YAR +F S+
Sbjct: 19 SKNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSV 78
Query: 68 PKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIG 127
+PD+FLFNV++RGFS NE P SS+ + HLRK+T L P++ TY+F +SAAS D G
Sbjct: 79 QRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAG 138
Query: 128 VLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKN 187
++HG A+V G S+L +G+ +V +YFKF V+ ARKVFD+MPEKDT+LWN+MISG KN
Sbjct: 139 RVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKN 198
Query: 188 CCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYV 247
+ +SI VF D++ T LD+T++ +LPAVAE+QELRLGM+I L K G + H YV
Sbjct: 199 EMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYV 258
Query: 248 LTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAE 307
LTG +S YSKCG+++ LFR+ +PD+++ NAMI GYT NG+TE SL LF++L+ S
Sbjct: 259 LTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGA 318
Query: 308 RVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARK 367
R+ SST+V L+PV GHL L IH +CLKS +S++SV TAL+TVYS+LNE+E+ARK
Sbjct: 319 RLRSSTLVSLVPVS---GHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARK 375
Query: 368 LFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGA 427
LFDES EKSL SWNAMI+GYTQNGLTE+AISLF+EMQ S+ +PNPVT++ ILSACAQLGA
Sbjct: 376 LFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGA 435
Query: 428 ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISG 487
+SLGKWVH+LV+S +FES+IYVSTALI MYAKCG+I EAR LFDLM+ K+EVTWNTMISG
Sbjct: 436 LSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISG 495
Query: 488 YGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP 547
YGLHG G EAL +F EML+SGI P+ VTFL VLYACSHAGLV+EGDEIF SMIH +GF+P
Sbjct: 496 YGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEP 555
Query: 548 LAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKL 607
+HYACMVDILGRAG L++AL+FI+ +++EPG +VW LLGAC IHKDTNLAR SEKL
Sbjct: 556 SVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKL 615
Query: 608 FELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSG 667
FELDP+NVGYHVLLSNI+SA+R+Y QAATVRQ KKRKLAKAPG TLIE+G TPHVFTSG
Sbjct: 616 FELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSG 675
Query: 668 DQLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMMKVHSEKLAIAFGLI 727
DQ HPQ IY LEKL GKMREAG+Q ET ALHDVEEEE+ELM+KVHSE+LAIAFGLI
Sbjct: 676 DQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLI 735
Query: 728 ATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
ATEPGTEIRIIKNLRVCLDCHT TK ISK+T RVIVVRDANRFHHFK GVCSCGDYW
Sbjct: 736 ATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa] gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 978 bits (2529), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/605 (76%), Positives = 527/605 (87%)
Query: 180 MISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKL 239
MISG +KN CF+DSI VFGDMV G D T+V AVLPAVAE+QEL+LGM+I CL +K
Sbjct: 1 MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60
Query: 240 GFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLF 299
GF+ HV +LTGL+S +SKCGEVE A LLF +I + DLISCNAMISG+TCNG+TE S+RLF
Sbjct: 61 GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120
Query: 300 RQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRL 359
++LL+S ERV+SSTIVGLIPV+ PFGH +L NCIH FC+K GIVS+SSV TAL+TVY RL
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRL 180
Query: 360 NEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSIL 419
NEM AR+LFDES+EK+LASWNAMI+G TQNGLT+ AISLFQ MQ + V PNPVTV+SIL
Sbjct: 181 NEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSIL 240
Query: 420 SACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEV 479
SACAQ+GA+SLG+WVH L+KS FESN+YVSTALIDMYAKCG+I ARELFDLM K+EV
Sbjct: 241 SACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEV 300
Query: 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSM 539
TWN MISGYGLHGHG EAL+LF +ML S ++P+G+TFLSVLYACSHAGLV+EGD IF +M
Sbjct: 301 TWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTM 360
Query: 540 IHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNL 599
+HD GF+PLAEHYACMVDILGRAGQL+KALEFIK + VEPGP VWGALLGACMIHKDTNL
Sbjct: 361 VHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNL 420
Query: 600 ARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGG 659
A VASEKLFELDPEN+GY+VL+SNIYS ER Y QAA+VRQV KK++LAK PGCTLIE+G
Sbjct: 421 AHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQ 480
Query: 660 TPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMMKVHSEK 719
PHVFTSGDQ HPQS AIYA L+KL GKM EAGFQTET T LHD+EEEEKEL MKVHSEK
Sbjct: 481 VPHVFTSGDQSHPQSKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKELTMKVHSEK 540
Query: 720 LAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKGGVCS 779
LAIAFGLI+TEPG EIRIIKNLRVCLDCH TKF+SK+T RVIVVRDANRFHHFK G+CS
Sbjct: 541 LAIAFGLISTEPGAEIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRFHHFKDGLCS 600
Query: 780 CGDYW 784
CGDYW
Sbjct: 601 CGDYW 605
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743669|emb|CBI36552.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/778 (65%), Positives = 597/778 (76%), Gaps = 61/778 (7%)
Query: 8 SRNLFLSLLKGAKTQSQLTQTHAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSI 67
+RNLFL+L+ T QL QTHAQII++G NDL TVTKL H+LS KA A LF +I
Sbjct: 9 TRNLFLTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTI 68
Query: 68 PKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIG 127
P PDLFL+NV+IR FS N P S++ YTHLRK+T L PDNFTY+FV+S AS+ +G
Sbjct: 69 PNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASS---LGLG 125
Query: 128 VLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKN 187
+LLH H+IV+G+GSDLFVG+A+V YFKFS V +ARKVFD M E+DTVLWN+M+SGL+KN
Sbjct: 126 LLLHAHSIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKN 185
Query: 188 CCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYV 247
CF ++I +FGDMV+ GG DST+VAAVLP VAE+Q+L LGM IQCL +K+GFH H YV
Sbjct: 186 SCFDEAILIFGDMVK-GGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYV 244
Query: 248 LTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAE 307
+TGL YSKCGE+E A LLF I +PDL+S NAMISGYTCN +TESS+RLF++LL S E
Sbjct: 245 ITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGE 304
Query: 308 RVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARK 367
+VNSS+IVGLIPVF+PFGHLHLT CIH FC KSG+VSNSSV TAL+TVYSRLNE+E+AR
Sbjct: 305 KVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARL 364
Query: 368 LFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGA 427
LFDESSEKSLASWNAMI+GY QNGLTE+AISLFQEMQ +V PNPVTV+SILSACAQLGA
Sbjct: 365 LFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGA 424
Query: 428 ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISG 487
+SLGKWVH+L+ +FESNI++ + + + VT+ +++
Sbjct: 425 LSLGKWVHDLINRESFESNIFMLHSRVS--------------------PTGVTFLSVLYA 464
Query: 488 YGLHGHGLEALQLFSEMLHS-GIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFK 546
G E ++F M+H G P L YAC
Sbjct: 465 CSHAGLVREGDEIFRSMVHDHGFEP-----LPEHYAC----------------------- 496
Query: 547 PLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEK 606
MVD+LGRAG L+KAL+FI+ + VEPGP VWGALLGACMIHKD NLAR+AS+K
Sbjct: 497 --------MVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDK 548
Query: 607 LFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTS 666
LFELDP+NVGY+VLLSNIYSA ++Y +AA+VR VVK+RKLAK PGCTLIEV T H+FTS
Sbjct: 549 LFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTS 608
Query: 667 GDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMMKVHSEKLAIAFGL 726
GDQ HPQ+TAIYAMLEKL GKMREAGFQTET TALHDVEEEEKELM+KVHSEKLAIAFGL
Sbjct: 609 GDQSHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGL 668
Query: 727 IATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
I +EPGTEIRIIKNLRVCLDCH ATKFISK+T RVIVVRDANRFHHFK G+CSCGDYW
Sbjct: 669 ITSEPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 726
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/785 (52%), Positives = 549/785 (69%), Gaps = 26/785 (3%)
Query: 9 RNLFLSLLKGAKTQSQLTQTHAQIIIHG-FQNDLSTVTKLAHRLSDFKAT-CYARALFFS 66
R +L L+ + T L Q A + G + D + T L R + +A + LF +
Sbjct: 20 RRSYLRLVALSSTPRHLDQLLAVSLASGHYALDPAPATALLLRYASLRAPPSHLLRLFRA 79
Query: 67 IPKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTAL-TPDNFTYSFVLSAASACC--- 122
P PD FL N ++R + LR + +PD+F+++F ++ S+ C
Sbjct: 80 FPCPDRFLRNALLRSLPS-------------LRPHLLFPSPDSFSFAFAATSLSSSCSSR 126
Query: 123 --DRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSM 180
D + LHG ++ +GY +D FV +AL LYFK S ARKVFD +P DT+LWN++
Sbjct: 127 GNDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTL 186
Query: 181 ISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLG 240
++GL + +++ F MV G DST++A+ L A AE + +G + G+K G
Sbjct: 187 LAGLPGS----EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCG 242
Query: 241 FHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFR 300
+H +V+TGL+S YSKCG+++ A+ LF + PDL++ NA+ISGY+ NG ESS+ LF+
Sbjct: 243 LAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFK 302
Query: 301 QLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLN 360
+L AS R NSST+V +IPV+ PFGH L C+H+F +K+ + +++ V TAL+T+Y RLN
Sbjct: 303 ELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLN 362
Query: 361 EMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILS 420
+ME+AR +FD EK++ SWNAMI+GY QNGLTE A++LFQ MQ V PNP+T+SS LS
Sbjct: 363 DMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLS 422
Query: 421 ACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVT 480
ACA LGA+SLGKWVH ++ E N+YV TALIDMYAKCG+I EAR +FD M +K+ V+
Sbjct: 423 ACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVS 482
Query: 481 WNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMI 540
WN MISGYGLHG G EAL+L+ +ML + I P+ TFLSV+YACSH GLV EG ++F+ M
Sbjct: 483 WNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMT 542
Query: 541 HDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEP-GPAVWGALLGACMIHKDTNL 599
+++ P EH CMVD+LGRAG+L +ALE I GP VWGALLGACM+HK+++L
Sbjct: 543 NEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDL 602
Query: 600 ARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGG 659
A++AS+KLFELD EN GY+VLLSN+Y++++ Y +AA VRQ K RKL K PGCTLIE+G
Sbjct: 603 AKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGD 662
Query: 660 TPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMMKVHSEK 719
PHVF +GD LHPQS AIY+ LE+L KM EAG+Q T AL+DVEEEEKE M+KVHSEK
Sbjct: 663 RPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEAALYDVEEEEKEHMVKVHSEK 722
Query: 720 LAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKGGVCS 779
LAIAFGL++TEPGTEIRIIKNLRVCLDCH ATKFISKVT R+IVVRDA+RFHHF+ GVCS
Sbjct: 723 LAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCS 782
Query: 780 CGDYW 784
CGDYW
Sbjct: 783 CGDYW 787
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 784 | ||||||
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.987 | 0.977 | 0.655 | 6.9e-276 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.977 | 0.946 | 0.378 | 2.5e-145 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.952 | 0.907 | 0.364 | 1.2e-134 | |
| TAIR|locus:2080727 | 623 | MEF10 "mitochondrial RNA editi | 0.766 | 0.964 | 0.422 | 4.4e-132 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.971 | 0.877 | 0.374 | 1e-130 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.951 | 0.856 | 0.354 | 3.6e-128 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.858 | 0.679 | 0.357 | 1e-126 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.960 | 0.853 | 0.367 | 1.4e-126 | |
| TAIR|locus:4010713776 | 659 | AT3G26782 [Arabidopsis thalian | 0.789 | 0.939 | 0.388 | 4e-122 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.957 | 0.843 | 0.352 | 5.1e-122 |
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2652 (938.6 bits), Expect = 6.9e-276, P = 6.9e-276
Identities = 509/777 (65%), Positives = 615/777 (79%)
Query: 8 SRNLFLSLLKGAKTQSQLTQTHAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSI 67
S+N +L K + + S L QTHAQII+HGF+ND+S +TKL RLSD A YAR +F S+
Sbjct: 19 SKNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSV 78
Query: 68 PKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIG 127
+PD+FLFNV++RGFS NE P SS+ + HLRK+T L P++ TY+F +SAAS D G
Sbjct: 79 QRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAG 138
Query: 128 VLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKN 187
++HG A+V G S+L +G+ +V +YFKF V+ ARKVFD+MPEKDT+LWN+MISG KN
Sbjct: 139 RVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKN 198
Query: 188 CCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYV 247
+ +SI VF D++ T LD+T++ +LPAVAE+QELRLGM+I L K G + H YV
Sbjct: 199 EMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYV 258
Query: 248 LTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAE 307
LTG +S YSKCG+++ LFR+ +PD+++ NAMI GYT NG+TE SL LF++L+ S
Sbjct: 259 LTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGA 318
Query: 308 RVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARK 367
R+ SST+V L+PV GHL L IH +CLKS +S++SV TAL+TVYS+LNE+E+ARK
Sbjct: 319 RLRSSTLVSLVPVS---GHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARK 375
Query: 368 LFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGA 427
LFDES EKSL SWNAMI+GYTQNGLTE+AISLF+EMQ S+ +PNPVT++ ILSACAQLGA
Sbjct: 376 LFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGA 435
Query: 428 ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISG 487
+SLGKWVH+LV+S +FES+IYVSTALI MYAKCG+I EAR LFDLM+ K+EVTWNTMISG
Sbjct: 436 LSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISG 495
Query: 488 YGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP 547
YGLHG G EAL +F EML+SGI P+ VTFL VLYACSHAGLV+EGDEIF SMIH +GF+P
Sbjct: 496 YGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEP 555
Query: 548 LAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKL 607
+HYACMVDILGRAG L++AL+FI+ +++EPG +VW LLGAC IHKDTNLAR SEKL
Sbjct: 556 SVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKL 615
Query: 608 FELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSG 667
FELDP+NVGYHVLLSNI+SA+R+Y QAATVRQ KKRKLAKAPG TLIE+G TPHVFTSG
Sbjct: 616 FELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSG 675
Query: 668 DQLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLI 727
DQ HPQ IY LEKL GKMREAG+Q ET A SE+LAIAFGLI
Sbjct: 676 DQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLI 735
Query: 728 ATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
ATEPGTEIRIIKNLRVCLDCHT TK ISK+T RVIVVRDANRFHHFK GVCSCGDYW
Sbjct: 736 ATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1420 (504.9 bits), Expect = 2.5e-145, P = 2.5e-145
Identities = 292/771 (37%), Positives = 449/771 (58%)
Query: 15 LLKGAKTQSQLTQTHAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSIPKPDLFL 74
LL+ + +L Q + +G + TKL + + A +F I L
Sbjct: 43 LLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVL 102
Query: 75 FNVIIRGFSN-NEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGH 133
++ +++GF+ +++ K+ + F+ +R + + P + ++++L + +G +HG
Sbjct: 103 YHTMLKGFAKVSDLDKA-LQFFVRMRYDD-VEPVVYNFTYLLKVCGDEAELRVGKEIHGL 160
Query: 134 AIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDS 193
+ SG+ DLF L ++Y K V ARKVFD+MPE+D V WN++++G +N + +
Sbjct: 161 LVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMA 220
Query: 194 IWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVS 253
+ + M ++ +VLPAV+ ++ + +G EI ++ GF V + T LV
Sbjct: 221 LEMVKSMCEEN-LKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVD 279
Query: 254 FYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSST 313
Y+KCG +E A LF ++ +++S N+MI Y N + ++ +F+++L + +
Sbjct: 280 MYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVS 339
Query: 314 IVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESS 373
++G + G L IH ++ G+ N SV+ +L ++Y + E++ A +F +
Sbjct: 340 VMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQ 399
Query: 374 EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKW 433
++L SWNAMI G+ QNG +A++ F +M++ V P+ T S+++A A+L KW
Sbjct: 400 SRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKW 459
Query: 434 VHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGH 493
+H +V + N++V+TAL+DMYAKCG I+ AR +FD+MS + TWN MI GYG HG
Sbjct: 460 IHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGF 519
Query: 494 GLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYA 553
G AL+LF EM I+P+GVTFLSV+ ACSH+GLV G + F M ++ + +HY
Sbjct: 520 GKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYG 579
Query: 554 CMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPE 613
MVD+LGRAG+L +A +FI + V+P V+GA+LGAC IHK+ N A A+E+LFEL+P+
Sbjct: 580 AMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPD 639
Query: 614 NVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQ 673
+ GYHVLL+NIY A + + VR + ++ L K PGC+++E+ H F SG HP
Sbjct: 640 DGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPD 699
Query: 674 STAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGT 733
S IYA LEKL ++EAG+ +T SEKLAI+FGL+ T GT
Sbjct: 700 SKKIYAFLEKLICHIKEAGYVPDT-NLVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGT 758
Query: 734 EIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
I + KNLRVC DCH ATK+IS VTGR IVVRD RFHHFK G CSCGDYW
Sbjct: 759 TIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1319 (469.4 bits), Expect = 1.2e-134, P = 1.2e-134
Identities = 277/759 (36%), Positives = 433/759 (57%)
Query: 29 HAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSIPKPDLFLFNVIIRGFSNNEMP 88
HA++++ ++ KL + AR F I D++ +N++I G+
Sbjct: 74 HARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNS 133
Query: 89 KSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAA 148
I ++ ++ LTPD T+ VL A D G +H A+ G+ D++V A+
Sbjct: 134 SEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAAS 190
Query: 149 LVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWL 208
L+ LY ++ V +AR +FD+MP +D WN+MISG ++ ++++ + NG +
Sbjct: 191 LIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL-----TLSNGLRAM 245
Query: 209 DSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLF 268
DS +V ++L A E + G+ I +K G ++V L+ Y++ G + + +F
Sbjct: 246 DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVF 305
Query: 269 -RDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHL 327
R VR DLIS N++I Y N + ++ LF+++ S + + T++ L + G +
Sbjct: 306 DRMYVR-DLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDI 364
Query: 328 HLTNCIHSFCLKSG-IVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAG 386
+ F L+ G + + ++ A+ +Y++L +++AR +F+ + SWN +I+G
Sbjct: 365 RACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISG 424
Query: 387 YTQNGLTEEAISLFQEMQAS-KVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFES 445
Y QNG EAI ++ M+ ++A N T S+L AC+Q GA+ G +H +
Sbjct: 425 YAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYL 484
Query: 446 NIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEML 505
+++V T+L DMY KCG + +A LF + + V WNT+I+ +G HGHG +A+ LF EML
Sbjct: 485 DVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEML 544
Query: 506 HSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQL 565
G++P +TF+++L ACSH+GLV EG F+ M D+G P +HY CMVD+ GRAGQL
Sbjct: 545 DEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQL 604
Query: 566 EKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIY 625
E AL+FIK ++++P ++WGALL AC +H + +L ++ASE LFE++PE+VGYHVLLSN+Y
Sbjct: 605 ETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMY 664
Query: 626 SAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLN 685
++ + +R + + L K PG + +EV VF +G+Q HP +Y L L
Sbjct: 665 ASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQ 724
Query: 686 GKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCL 745
K++ G+ + SE+LAIAF LIAT T IRI KNLRVC
Sbjct: 725 AKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCG 784
Query: 746 DCHTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
DCH+ TKFISK+T R I+VRD+NRFHHFK GVCSCGDYW
Sbjct: 785 DCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
|
| TAIR|locus:2080727 MEF10 "mitochondrial RNA editing factor 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
Identities = 258/610 (42%), Positives = 382/610 (62%)
Query: 177 WNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLG 236
WN + L F +SI ++ M+R+G + D+ S +L + A + G ++ C
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSS-PDAFSFPFILKSCASLSLPVSGQQLHCHV 79
Query: 237 LKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLIS-C-NAMISGYTCNGKTES 294
K G +VLT L+S Y KCG V A +F + + +S C NA+ISGYT N K
Sbjct: 80 TKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTD 139
Query: 295 SLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALST 354
+ +FR++ + V+S T++GL+P+ +L L +H C+K G+ S +VL + T
Sbjct: 140 AAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFIT 199
Query: 355 VYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVT 414
+Y + +EA R+LFDE K L +WNA+I+GY+QNGL + + L+++M++S V P+P T
Sbjct: 200 MYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFT 259
Query: 415 VSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS 474
+ S+LS+CA LGA +G V +LV+S F N++VS A I MYA+CGN+ +AR +FD+M
Sbjct: 260 LVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMP 319
Query: 475 HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDE 534
KS V+W MI YG+HG G L LF +M+ GIRP G F+ VL ACSH+GL +G E
Sbjct: 320 VKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLE 379
Query: 535 IFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIH 594
+F++M ++ +P EHY+C+VD+LGRAG+L++A+EFI+ + VEP AVWGALLGAC IH
Sbjct: 380 LFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIH 439
Query: 595 KDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTL 654
K+ ++A +A K+ E +P N+GY+VL+SNIYS ++ +R ++++R K PG +
Sbjct: 440 KNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSY 499
Query: 655 IEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXX 714
+E G H+F +GD+ H Q+ ++ ML++L + E +
Sbjct: 500 VEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNMDC------DRGEEVSSTTR 553
Query: 715 XXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFK 774
SE+LAIAFG++ + PGTEI +IKNLRVC DCH K +SK+ R VVRDA+RFH+FK
Sbjct: 554 EHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFK 613
Query: 775 GGVCSCGDYW 784
GVCSC DYW
Sbjct: 614 DGVCSCKDYW 623
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1282 (456.3 bits), Expect = 1.0e-130, P = 1.0e-130
Identities = 295/788 (37%), Positives = 441/788 (55%)
Query: 10 NLFLSLLKGAKTQ-SQL--TQTHAQIIIHGFQNDLSTVTKLAHRL---SDFKATCYARAL 63
++F S+LK + T +L Q H Q I GF +D+S T L S+FK R +
Sbjct: 94 SIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKD---GRKV 150
Query: 64 FFSIPKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCD 123
F + + ++ + +I G++ N M + + ++ N P++FT++ L +
Sbjct: 151 FDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQ-NEGTQPNSFTFAAALGVLAEEGV 209
Query: 124 RSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISG 183
G+ +H + +G + V +L++LY K V+ AR +FDK K V WNSMISG
Sbjct: 210 GGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISG 269
Query: 184 LMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHD 243
N +++ +F M R L +S A+V+ A ++ELR ++ C +K GF
Sbjct: 270 YAANGLDLEALGMFYSM-RLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLF 328
Query: 244 HVYVLTGLVSFYSKCGEVERAELLFRDI-VRPDLISCNAMISGYTCNGKTESSLRLFRQL 302
+ T L+ YSKC + A LF++I +++S AMISG+ N E ++ LF ++
Sbjct: 329 DQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEM 388
Query: 303 LASAERVNS---STIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRL 359
R N S I+ +PV P + +H+ +K+ +S+V TAL Y +L
Sbjct: 389 KRKGVRPNEFTYSVILTALPVISP-------SEVHAQVVKTNYERSSTVGTALLDAYVKL 441
Query: 360 NEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSIL 419
++E A K+F +K + +W+AM+AGY Q G TE AI +F E+ + PN T SSIL
Sbjct: 442 GKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSIL 501
Query: 420 SACAQLGA-ISLGKWVHEL-VKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKS 477
+ CA A + GK H +KSR +S++ VS+AL+ MYAK GNI A E+F K
Sbjct: 502 NVCAATNASMGQGKQFHGFAIKSR-LDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKD 560
Query: 478 EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQ 537
V+WN+MISGY HG ++AL +F EM ++ GVTF+ V AC+HAGLV EG++ F
Sbjct: 561 LVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFD 620
Query: 538 SMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDT 597
M+ D P EH +CMVD+ RAGQLEKA++ I+ + G +W +L AC +HK T
Sbjct: 621 IMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKT 680
Query: 598 NLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEV 657
L R+A+EK+ + PE+ +VLLSN+Y+ D+ + A VR+++ +R + K PG + IEV
Sbjct: 681 ELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEV 740
Query: 658 GGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXS 717
+ F +GD+ HP IY LE L+ ++++ G++ +T S
Sbjct: 741 KNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHS 800
Query: 718 EKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKG-G 776
E+LAIAFGLIAT G+ + IIKNLRVC DCH K I+K+ R IVVRD+NRFHHF G
Sbjct: 801 ERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDG 860
Query: 777 VCSCGDYW 784
VCSCGD+W
Sbjct: 861 VCSCGDFW 868
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1258 (447.9 bits), Expect = 3.6e-128, P = 3.6e-128
Identities = 267/753 (35%), Positives = 426/753 (56%)
Query: 35 HGFQNDLSTVTKLAHRLSDFKATCYARALFFSIPKPDLFLFNVIIRGFSNNEMPKSSICF 94
+GF D + +KL+ ++ A +F + +N+++ + + SI
Sbjct: 123 NGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGL 182
Query: 95 YTHLRKNTALTPDNFTYSFVLSAASACCDRSI--GVLLHGHAIVSGYGSDLFVGAALVDL 152
+ + ++ + D++T+S V + S+ RS+ G LHG + SG+G VG +LV
Sbjct: 183 FKKMM-SSGVEMDSYTFSCVSKSFSSL--RSVHGGEQLHGFILKSGFGERNSVGNSLVAF 239
Query: 153 YFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTS 212
Y K V SARKVFD+M E+D + WNS+I+G + N + + VF M+ +G +D +
Sbjct: 240 YLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSG-IEIDLAT 298
Query: 213 VAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIV 272
+ +V A+ + + LG + +G+K F L+ YSKCG+++ A+ +FR++
Sbjct: 299 IVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMS 358
Query: 273 RPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNC 332
++S +MI+GY G +++LF ++ + T+ ++ + L
Sbjct: 359 DRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKR 418
Query: 333 IHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGL 392
+H + ++ + + V AL +Y++ M+ A +F E K + SWN +I GY++N
Sbjct: 419 VHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCY 478
Query: 393 TEEAISLFQEM-QASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVST 451
EA+SLF + + + +P+ TV+ +L ACA L A G+ +H + + S+ +V+
Sbjct: 479 ANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVAN 538
Query: 452 ALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP 511
+L+DMYAKCG ++ A LFD ++ K V+W MI+GYG+HG G EA+ LF++M +GI
Sbjct: 539 SLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEA 598
Query: 512 SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEF 571
++F+S+LYACSH+GLV EG F M H+ +P EHYAC+VD+L R G L KA F
Sbjct: 599 DEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRF 658
Query: 572 IKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDY 631
I+ + + P +WGALL C IH D LA +EK+FEL+PEN GY+VL++NIY+ +
Sbjct: 659 IENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKW 718
Query: 632 LQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREA 691
Q +R+ + +R L K PGC+ IE+ G ++F +GD +P++ I A L K+ +M E
Sbjct: 719 EQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEE 778
Query: 692 GFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTAT 751
G+ T A SEKLA+A G+I++ G IR+ KNLRVC DCH
Sbjct: 779 GYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMA 838
Query: 752 KFISKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
KF+SK+T R IV+RD+NRFH FK G CSC +W
Sbjct: 839 KFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1093 (389.8 bits), Expect = 1.0e-126, Sum P(2) = 1.0e-126
Identities = 244/682 (35%), Positives = 380/682 (55%)
Query: 107 DNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVF 166
D T+ +L+ A ++G +H A+ G L V +L+++Y K AR VF
Sbjct: 314 DQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVF 373
Query: 167 DKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQE- 225
D M E+D + WNS+I+G+ +N +++ +F ++R G D ++ +VL A + + E
Sbjct: 374 DNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCG-LKPDQYTMTSVLKAASSLPEG 432
Query: 226 LRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISG 285
L L ++ +K+ +V T L+ YS+ ++ AE+LF + DL++ NAM++G
Sbjct: 433 LSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILF-ERHNFDLVAWNAMMAG 491
Query: 286 YTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNC---IHSFCLKSGI 342
YT + +L+LF + ER + T L VF G L N +H++ +KSG
Sbjct: 492 YTQSHDGHKTLKLFALMHKQGERSDDFT---LATVFKTCGFLFAINQGKQVHAYAIKSGY 548
Query: 343 VSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQE 402
+ V + + +Y + +M AA+ FD +W MI+G +NG E A +F +
Sbjct: 549 DLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQ 608
Query: 403 MQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGN 462
M+ V P+ T++++ A + L A+ G+ +H N ++ +V T+L+DMYAKCG+
Sbjct: 609 MRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGS 668
Query: 463 IVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYA 522
I +A LF + + WN M+ G HG G E LQLF +M GI+P VTF+ VL A
Sbjct: 669 IDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSA 728
Query: 523 CSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPA 582
CSH+GLV E + +SM D+G KP EHY+C+ D LGRAG +++A I+ +++E +
Sbjct: 729 CSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASAS 788
Query: 583 VWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVK 642
++ LL AC + DT + + KL EL+P + +VLLSN+Y+A + + R ++K
Sbjct: 789 MYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMK 848
Query: 643 KRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXX 702
K+ K PG + IEV H+F D+ + Q+ IY ++ + +++ G+ ET
Sbjct: 849 GHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLV 908
Query: 703 XXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVI 762
SEKLA+AFGL++T P T IR+IKNLRVC DCH A K+I+KV R I
Sbjct: 909 DVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREI 968
Query: 763 VVRDANRFHHFKGGVCSCGDYW 784
V+RDANRFH FK G+CSCGDYW
Sbjct: 969 VLRDANRFHRFKDGICSCGDYW 990
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| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1243 (442.6 bits), Expect = 1.4e-126, P = 1.4e-126
Identities = 278/757 (36%), Positives = 423/757 (55%)
Query: 29 HAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSIPKPDLFLFNVIIRGFSNNEMP 88
+ QI+ GF++DL L S AR +F +P DL +N +I G+S++
Sbjct: 129 YEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYY 188
Query: 89 KSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAA 148
+ ++ Y H KN+ + PD+FT S VL A G LHG A+ SG S + V
Sbjct: 189 EEALEIY-HELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNG 247
Query: 149 LVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWL 208
LV +Y KF AR+VFD+M +D+V +N+MI G +K ++S+ +F + +
Sbjct: 248 LVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKP-- 305
Query: 209 DSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLF 268
D +V++VL A +++L L I LK GF V L+ Y+KCG++ A +F
Sbjct: 306 DLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVF 365
Query: 269 RDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLH 328
+ D +S N++ISGY +G +++LF+ ++ E+ + T + LI V L
Sbjct: 366 NSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLK 425
Query: 329 LTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYT 388
+HS +KSGI + SV AL +Y++ E+ + K+F +WN +I+
Sbjct: 426 FGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACV 485
Query: 389 QNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIY 448
+ G + + +M+ S+V P+ T L CA L A LGK +H + +ES +
Sbjct: 486 RFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQ 545
Query: 449 VSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSG 508
+ ALI+MY+KCG + + +F+ MS + VTW MI YG++G G +AL+ F++M SG
Sbjct: 546 IGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSG 605
Query: 509 IRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKA 568
I P V F++++YACSH+GLV EG F+ M + P+ EHYAC+VD+L R+ ++ KA
Sbjct: 606 IVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKA 665
Query: 569 LEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAE 628
EFI+ + ++P ++W ++L AC D A S ++ EL+P++ GY +L SN Y+A
Sbjct: 666 EEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAAL 725
Query: 629 RDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKM 688
R + + + +R+ +K + + K PG + IEVG HVF+SGD PQS AIY LE L M
Sbjct: 726 RKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLM 785
Query: 689 REAGFQTET-VTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDC 747
+ G+ + + SE+LAIAFGL+ TEPGT ++++KNLRVC DC
Sbjct: 786 AKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDC 845
Query: 748 HTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
H TK ISK+ GR I+VRDANRFH FK G CSC D W
Sbjct: 846 HEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882
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| TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1201 (427.8 bits), Expect = 4.0e-122, P = 4.0e-122
Identities = 245/630 (38%), Positives = 370/630 (58%)
Query: 165 VFDKMPEK-DTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEV 223
+F++ +K D WNS+I+ L ++ +++ F M R + +S + A + +
Sbjct: 31 LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSM-RKLSLYPTRSSFPCAIKACSSL 89
Query: 224 QELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMI 283
++ G + G+ ++V + L+ YS CG++E A +F +I + +++S +MI
Sbjct: 90 FDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMI 149
Query: 284 SGYTCNGKTESSLRLFRQLLASAERVNSSTIV---GLIPVFYPFGHLH---LTNCIHSFC 337
GY NG ++ LF+ LL + + + GL+ V + LT IHSF
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFV 209
Query: 338 LKSGIVSNSSVLTALSTVYSRLNE--MEAARKLFDESSEKSLASWNAMIAGYTQNGLTEE 395
+K G SV L Y++ E + ARK+FD+ +K S+N++++ Y Q+G++ E
Sbjct: 210 IKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNE 269
Query: 396 AISLFQEMQASKVAP-NPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALI 454
A +F+ + +KV N +T+S++L A + GA+ +GK +H+ V E ++ V T++I
Sbjct: 270 AFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSII 329
Query: 455 DMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGV 514
DMY KCG + AR+ FD M +K+ +W MI+GYG+HGH +AL+LF M+ SG+RP+ +
Sbjct: 330 DMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYI 389
Query: 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKG 574
TF+SVL ACSHAGL EG F +M G +P EHY CMVD+LGRAG L+KA + I+
Sbjct: 390 TFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQR 449
Query: 575 LAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQA 634
+ ++P +W +LL AC IHK+ LA ++ +LFELD N GY++LLS+IY+ +
Sbjct: 450 MKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDV 509
Query: 635 ATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQ 694
VR ++K R L K PG +L+E+ G HVF GD+ HPQ IY L +LN K+ EAG+
Sbjct: 510 ERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYV 569
Query: 695 TETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFI 754
+ T + SEKLAIAFG++ T PG+ + ++KNLRVC DCH K I
Sbjct: 570 SNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLI 629
Query: 755 SKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
SK+ R VVRDA RFHHFK G CSCGDYW
Sbjct: 630 SKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
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| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1200 (427.5 bits), Expect = 5.1e-122, P = 5.1e-122
Identities = 275/780 (35%), Positives = 434/780 (55%)
Query: 27 QTHAQIIIHGFQND----LSTVTKLAHRLSDFKATCYARALFFSIPKPDLFLFNVIIRGF 82
Q HA + G+ D +T+ L + DF A Y +F I + + +N +I
Sbjct: 118 QIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV-YK--VFDRISERNQVSWNSLISSL 174
Query: 83 SNNEMPKSSI-CFYTHLRKNTALTPDNFTYSFVLSAASACC---DRSIGVLLHGHAIVSG 138
+ E + ++ F L +N + P +FT V++A S +G +H + + G
Sbjct: 175 CSFEKWEMALEAFRCMLDEN--VEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG 232
Query: 139 YGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFG 198
+ + LV +Y K + S++ + +D V WN+++S L +N +++
Sbjct: 233 ELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLR 291
Query: 199 DMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHD-HVYVLTGLVSFYSK 257
+MV G D ++++VLPA + ++ LR G E+ LK G D + +V + LV Y
Sbjct: 292 EMVLEG-VEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCN 350
Query: 258 CGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERV-NSSTIVG 316
C +V +F + + NAMI+GY+ N + +L LF + SA + NS+T+ G
Sbjct: 351 CKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAG 410
Query: 317 LIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKS 376
++P G IH F +K G+ + V L +YSRL +++ A ++F + ++
Sbjct: 411 VVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRD 470
Query: 377 LASWNAMIAGYTQNGLTEEAISLFQEMQ---------ASKVA--PNPVTVSSILSACAQL 425
L +WN MI GY + E+A+ L +MQ AS+V+ PN +T+ +IL +CA L
Sbjct: 471 LVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAAL 530
Query: 426 GAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMI 485
A++ GK +H N +++ V +AL+DMYAKCG + +R++FD + K+ +TWN +I
Sbjct: 531 SALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVII 590
Query: 486 SGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGF 545
YG+HG+G EA+ L M+ G++P+ VTF+SV ACSH+G+V EG IF M D+G
Sbjct: 591 MAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGV 650
Query: 546 KPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPA-VWGALLGACMIHKDTNLARVAS 604
+P ++HYAC+VD+LGRAG++++A + + + + A W +LLGA IH + + +A+
Sbjct: 651 EPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAA 710
Query: 605 EKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVF 664
+ L +L+P ++VLL+NIYS+ + +A VR+ +K++ + K PGC+ IE G H F
Sbjct: 711 QNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKF 770
Query: 665 TSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAF 724
+GD HPQS + LE L +MR+ G+ +T SEKLAIAF
Sbjct: 771 VAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAF 830
Query: 725 GLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
G++ T PGT IR+ KNLRVC DCH ATKFISK+ R I++RD RFH FK G CSCGDYW
Sbjct: 831 GILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SUH6 | PP341_ARATH | No assigned EC number | 0.6731 | 0.9872 | 0.9772 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00017181001 | SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (781 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 784 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-176 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-165 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-74 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-51 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-30 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 5e-24 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-04 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 0.001 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.004 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 526 bits (1357), Expect = e-176
Identities = 272/751 (36%), Positives = 414/751 (55%), Gaps = 15/751 (1%)
Query: 41 LSTVTKLAHRLSD--------FKATCYARALFFSIPKPDLFLFNVIIRGFSNNEMPKSSI 92
LS+ L RL + F +A +F +P+ DLF +NV++ G++ ++
Sbjct: 113 LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEAL 172
Query: 93 CFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDL 152
C Y H + PD +T+ VL D + G +H H + G+ D+ V AL+ +
Sbjct: 173 CLY-HRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231
Query: 153 YFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTS 212
Y K V SAR VFD+MP +D + WN+MISG +N + + +F M R D +
Sbjct: 232 YVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM-RELSVDPDLMT 290
Query: 213 VAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIV 272
+ +V+ A + + RLG E+ +K GF V V L+ Y G AE +F +
Sbjct: 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350
Query: 273 RPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNC 332
D +S AMISGY NG + +L + + + TI ++ G L +
Sbjct: 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410
Query: 333 IHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGL 392
+H + G++S V AL +YS+ ++ A ++F EK + SW ++IAG N
Sbjct: 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNR 470
Query: 393 TEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTA 452
EA+ F++M + PN VT+ + LSACA++GA+ GK +H V + ++ A
Sbjct: 471 CFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529
Query: 453 LIDMYAKCGNIVEARELFDLMSHKSEVT-WNTMISGYGLHGHGLEALQLFSEMLHSGIRP 511
L+D+Y +CG + A F+ SH+ +V WN +++GY HG G A++LF+ M+ SG+ P
Sbjct: 530 LLDLYVRCGRMNYAWNQFN--SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587
Query: 512 SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEF 571
VTF+S+L ACS +G+V +G E F SM + P +HYAC+VD+LGRAG+L +A F
Sbjct: 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNF 647
Query: 572 IKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDY 631
I + + P PAVWGALL AC IH+ L +A++ +FELDP +VGY++LL N+Y+ +
Sbjct: 648 INKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKW 707
Query: 632 LQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREA 691
+ A VR+ +++ L PGC+ +EV G H F + D+ HPQ I +LE KM+ +
Sbjct: 708 DEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKAS 767
Query: 692 GFQTETVTALHDVEEEEKELMMKVHSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTAT 751
G +++ ++E + ++ HSE+LAIAFGLI T PG I + KNL +C +CH
Sbjct: 768 GLAGSESSSMDEIEVSKDDIFCG-HSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTV 826
Query: 752 KFISKVTGRVIVVRDANRFHHFKGGVCSCGD 782
KFISK+ R I VRD +FHHFK G CSCGD
Sbjct: 827 KFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 494 bits (1272), Expect = e-165
Identities = 224/577 (38%), Positives = 344/577 (59%)
Query: 208 LDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELL 267
L +++ A++ A ++ +R + GF Y++ ++ + KCG + A L
Sbjct: 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL 180
Query: 268 FRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHL 327
F ++ +L S +I G G + LFR++ T V ++ G
Sbjct: 181 FDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 328 HLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGY 387
+H LK+G+V ++ V AL +YS+ ++E AR +FD EK+ +WN+M+AGY
Sbjct: 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGY 300
Query: 388 TQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNI 447
+G +EEA+ L+ EM+ S V+ + T S ++ ++L + K H + F +I
Sbjct: 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360
Query: 448 YVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHS 507
+TAL+D+Y+K G + +AR +FD M K+ ++WN +I+GYG HG G +A+++F M+
Sbjct: 361 VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 508 GIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEK 567
G+ P+ VTFL+VL AC ++GL +G EIFQSM +H KP A HYACM+++LGR G L++
Sbjct: 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480
Query: 568 ALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSA 627
A I+ +P +W ALL AC IHK+ L R+A+EKL+ + PE + +V+L N+Y++
Sbjct: 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS 540
Query: 628 ERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGK 687
+AA V + +K++ L+ P CT IEV H F SGD+LHPQS IY L++L +
Sbjct: 541 SGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKE 600
Query: 688 MREAGFQTETVTALHDVEEEEKELMMKVHSEKLAIAFGLIATEPGTEIRIIKNLRVCLDC 747
+ E G+ E L DV+E+E+++ + HSEKLAIAFGLI T T ++I ++ R+C DC
Sbjct: 601 ISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDC 660
Query: 748 HTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784
H KFI+ VT R IVVRDA+RFHHFK G CSCGDYW
Sbjct: 661 HKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 259 bits (662), Expect = 2e-74
Identities = 144/452 (31%), Positives = 233/452 (51%), Gaps = 21/452 (4%)
Query: 127 GVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMK 186
G + A+ S + +G A++ ++ +F + A VF KMPE+D WN ++ G K
Sbjct: 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAK 164
Query: 187 NCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVY 246
F +++ ++ M+ G D + VL + +L G E+ ++ GF V
Sbjct: 165 AGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD 223
Query: 247 VLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASA 306
V+ L++ Y KCG+V A L+F + R D IS NAMISGY NG+ L LF + +
Sbjct: 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283
Query: 307 ERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAAR 366
+ TI +I G L +H + +K+G + SV +L +Y L A
Sbjct: 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 367 KLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLG 426
K+F K SW AMI+GY +NGL ++A+ + M+ V+P+ +T++S+LSACA LG
Sbjct: 344 KVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403
Query: 427 AISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMIS 486
+ +G +HEL + + S + V+ ALI+MY+KC I +A E+F + K ++W ++I+
Sbjct: 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463
Query: 487 GYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDH--- 543
G L+ EAL F +ML + ++P+ VT ++ L AC+ G + G E IH H
Sbjct: 464 GLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKE-----IHAHVLR 517
Query: 544 ------GFKPLAEHYACMVDILGRAGQLEKAL 569
GF P A ++D+ R G++ A
Sbjct: 518 TGIGFDGFLPNA-----LLDLYVRCGRMNYAW 544
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 3e-51
Identities = 102/347 (29%), Positives = 178/347 (51%), Gaps = 13/347 (3%)
Query: 98 LRKNTALTPDNFTYSFVLSAASACCDRSIGVL--LHGHAIVSGYGSDLFVGAALVDLYFK 155
L T TY ++ A A +SI + ++ H SG+ D ++ ++ ++ K
Sbjct: 113 LEAGCPFTLPASTYDALVEACIAL--KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK 170
Query: 156 FSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAA 215
+ AR++FD+MPE++ W ++I GL+ ++++ +F +M +G + +
Sbjct: 171 CGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD-AEPRTFVV 229
Query: 216 VLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPD 275
+L A A + R G ++ C LK G +V L+ YSKCG++E A +F +
Sbjct: 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT 289
Query: 276 LISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHS 335
++ N+M++GY +G +E +L L+ ++ S ++ T +I +F L H+
Sbjct: 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349
Query: 336 FCLKSG----IVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNG 391
+++G IV+N TAL +YS+ ME AR +FD K+L SWNA+IAGY +G
Sbjct: 350 GLIRTGFPLDIVAN----TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHG 405
Query: 392 LTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELV 438
+A+ +F+ M A VAPN VT ++LSAC G G + + +
Sbjct: 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 3e-30
Identities = 117/467 (25%), Positives = 204/467 (43%), Gaps = 66/467 (14%)
Query: 60 ARALFFSIPKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAAS 119
AR LF +P+ +L + II G + + + + + ++ + + T+ +L A++
Sbjct: 177 ARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS-DAEPRTFVVMLRASA 235
Query: 120 ACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNS 179
G LH + +G D FV AL+D+Y K ++ AR VFD MPEK TV WNS
Sbjct: 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNS 295
Query: 180 MISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKL 239
M++G + ++++ ++ +M R+ G +D + + ++ + + L + ++
Sbjct: 296 MLAGYALHGYSEEALCLYYEM-RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354
Query: 240 GFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLF 299
GF + T LV YSK G +E A +F + R +LIS NA+I+GY +G+ ++ +F
Sbjct: 355 GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMF 414
Query: 300 RQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRL 359
+++A N T + ++ S C SG+
Sbjct: 415 ERMIAEGVAPNHVTFLAVL----------------SACRYSGLS---------------- 442
Query: 360 NEMEAARKLFDESSE----KSLASWNA-MIAGYTQNGLTEEAISLFQEMQASKVAPNPVT 414
E ++F SE K A A MI + GL +EA ++ + AP T
Sbjct: 443 ---EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR------APFKPT 493
Query: 415 VS---SILSACAQLGAISLGKWVHELVKSRNFES-NIYVSTALIDMYAKCGNIVEARELF 470
V+ ++L+AC + LG+ E + E N YV L+++Y G EA ++
Sbjct: 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV--VLLNLYNSSGRQAEAAKVV 551
Query: 471 DLMSHK-----SEVTWNTM-------ISGYGLHGHGLEALQLFSEML 505
+ + K TW + SG LH E Q E++
Sbjct: 552 ETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELM 598
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 5e-24
Identities = 54/132 (40%), Positives = 71/132 (53%), Gaps = 23/132 (17%)
Query: 650 PGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHDVEEEE- 708
PGC E SGD HP S E+L +++ G ET HDV+ EE
Sbjct: 1 PGCVWSEG----KKTLSGDGSHPTS------KEELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 709 -----KELMMKVHSEKLAIAFGLIATEPGTEIRIIKNL-RVCLDCHTATKFISKVTGRVI 762
K ++ H+EK A+A+GL+ T RIIK L R+C DCH ++I+K TGR I
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGREI 104
Query: 763 VVRDANRFHHFK 774
+VRD +RFHHFK
Sbjct: 105 IVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 4e-18
Identities = 44/164 (26%), Positives = 74/164 (45%)
Query: 372 SSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLG 431
SS S N+ + +G E+A+ L + MQ +V + ++ C A+ G
Sbjct: 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEG 105
Query: 432 KWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLH 491
V S + + + A++ M+ + G +V A +F M + +WN ++ GY
Sbjct: 106 SRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKA 165
Query: 492 GHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEI 535
G+ EAL L+ ML +G+RP TF VL C + G E+
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV 209
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 5e-14
Identities = 56/230 (24%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 380 WNAMIAGYTQNGLTEEAISLFQEMQASK--VAPNPVTVSSILSACAQLGAISLGKWVHEL 437
+NA+I+ Q+G + A + EM+A + P+ +TV +++ ACA G + K V+++
Sbjct: 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604
Query: 438 VKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHK----SEVTWNTMISGYGLHGH 493
+ N + V T ++ ++ G+ A ++D M K EV ++ ++ G G
Sbjct: 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664
Query: 494 GLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYA 553
+A ++ + GI+ V++ S++ ACS+A ++ E+++ I +P
Sbjct: 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED-IKSIKLRPTVSTMN 723
Query: 554 CMVDILGRAGQLEKALEF---IKGLAVEPGPAVWGALLGACMIHKDTNLA 600
++ L QL KALE +K L + P + LL A D ++
Sbjct: 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 4e-10
Identities = 76/303 (25%), Positives = 134/303 (44%), Gaps = 37/303 (12%)
Query: 335 SFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTE 394
S C KSG V A+ V+ +EM A E ++ ++ A+I G + G
Sbjct: 480 STCAKSGKVD------AMFEVF---HEMVNA------GVEANVHTFGALIDGCARAGQVA 524
Query: 395 EAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFES------NIY 448
+A + M++ V P+ V ++++SAC Q GA+ V +K+ E+ +I
Sbjct: 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA---ETHPIDPDHIT 581
Query: 449 VSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLE-----ALQLFSE 503
V AL+ A G + A+E++ ++ H+ + + ++ + AL ++ +
Sbjct: 582 VG-ALMKACANAGQVDRAKEVYQMI-HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD 639
Query: 504 MLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAG 563
M G++P V F +++ HAG + + EI Q G K Y+ ++ A
Sbjct: 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA-RKQGIKLGTVSYSSLMGACSNAK 698
Query: 564 QLEKALEF---IKGLAVEPGPAVWGALLGA-CMIHKDTNLARVASE-KLFELDPENVGYH 618
+KALE IK + + P + AL+ A C ++ V SE K L P + Y
Sbjct: 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758
Query: 619 VLL 621
+LL
Sbjct: 759 ILL 761
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 6e-10
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 379 SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQ 424
++N +I GY + G EEA+ LF EM+ + PN T S ++ +
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 1e-09
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 476 KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSH 525
VT+NT+I GY G EAL+LF+EM GI+P+ T+ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 2e-07
Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 12/206 (5%)
Query: 407 KVAPNPV--TVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIV 464
K+ NP T + ++S CA I V LV+ +++ + T LI AK G +
Sbjct: 430 KLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489
Query: 465 EARELFDLMSHKSEV-----TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSV 519
E+F M + + V T+ +I G G +A + M ++P V F ++
Sbjct: 490 AMFEVFHEMVN-AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
Query: 520 LYACSHAGLVREGDEIFQSMIHD-HGFKPLAEHYACMVDILGRAGQLEKALEFIKGL--- 575
+ AC +G V ++ M + H P ++ AGQ+++A E + +
Sbjct: 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
Query: 576 AVEPGPAVWGALLGACMIHKDTNLAR 601
++ P V+ + +C D + A
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFAL 634
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 8e-07
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 479 VTWNTMISGYGLHGHGLEALQLFSEMLHSGI 509
VT+N++ISGY G EAL+LF EM G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 379 SWNAMIAGYTQNGLTEEAISLFQEMQASKV 408
++N++I+GY + G EEA+ LF+EM+ V
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 479 VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPS 512
VT+NT+I G G EAL+LF EM GI P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-06
Identities = 68/338 (20%), Positives = 119/338 (35%), Gaps = 85/338 (25%)
Query: 344 SNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLT-------EEA 396
+ + L+ L Y L + E A + +++E L NA TQ G++ EA
Sbjct: 361 DDPAALSLLGEAYLALGDFEKAAEYLAKATE--LDPENAAA--RTQLGISKLSQGDPSEA 416
Query: 397 ISLFQEMQASKVAPNPVTVSSIL--------------SACAQL--------------GAI 428
I+ + A+++ P +L +A +L GAI
Sbjct: 417 IADLE--TAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474
Query: 429 SLG-----KWVHELVKSRNFESNIYVSTA-LIDMYAKCGNIVEARELFDLMSHKSEVTWN 482
LG K K+ + E + + + A L + + GN +A + F+ + +T
Sbjct: 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKV-----LT-- 527
Query: 483 TMISGYGLHGHGLEALQLFSEMLHSGIRPSGVT-FLSVLYACSHAGLVREGDEIFQSMIH 541
+ L A+ + + +L EI
Sbjct: 528 -------IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE-------LNPQEI------ 567
Query: 542 DHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACMIHKDTNL 599
LA++Y GQL+KAL + A P W L A + D N
Sbjct: 568 -EPALALAQYYL-------GKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619
Query: 600 ARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATV 637
A + +KL L P++ +LL++ Y+ ++Y +A T
Sbjct: 620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITS 657
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 379 SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN 411
++N +I G + G EEA+ LF+EM+ + P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 451 TALIDMYAKCGNIVEARELFDLMSHK----SEVTWNTMISGY 488
LID Y K G + EA +LF+ M + + T++ +I G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 57/304 (18%), Positives = 115/304 (37%), Gaps = 40/304 (13%)
Query: 272 VRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSS--TIVGLIPVFYPFGHLHL 329
V+PD + NA+IS +G + + + ++ A ++ T+ L+ G +
Sbjct: 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597
Query: 330 TNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLAS----WNAMIA 385
++ + I V T S+ + + A ++D+ +K + ++A++
Sbjct: 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657
Query: 386 GYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFES 445
G ++A + Q+ + + V+ SS++ AC+ ++E +KS
Sbjct: 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717
Query: 446 NIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEML 505
+ AL + A C E +L +AL++ SEM
Sbjct: 718 TVSTMNAL--ITALC----EGNQL-------------------------PKALEVLSEMK 746
Query: 506 HSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQL 565
G+ P+ +T+ +L A G ++ D G KP C+ + R +
Sbjct: 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLR--RF 803
Query: 566 EKAL 569
EKA
Sbjct: 804 EKAC 807
|
Length = 1060 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 20/86 (23%), Positives = 28/86 (32%), Gaps = 10/86 (11%)
Query: 559 LGRAGQLEKALEFIKGLAVEPGPAVWGALLG---ACMIHKDTNLARVASEKLFELDPE-- 613
R G +A+ ++ A P W A A + AR A + EL P
Sbjct: 110 QIRNGNFGEAVSVLR-KAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP 168
Query: 614 ----NVGYHVLLSNIYSAERDYLQAA 635
N+G +LL L A
Sbjct: 169 SIANNLGMSLLLRGDLEDAETLLLPA 194
|
Length = 257 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.001
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 562 AGQLEKALE-FIKGLAVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHV 619
G ++ALE + K L ++P + L A A EK ELDP+N +
Sbjct: 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYY 72
Query: 620 LLSNIYSAERDYLQA 634
L Y Y +A
Sbjct: 73 NLGLAYYKLGKYEEA 87
|
Length = 100 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 478 EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP 511
T+N ++ G AL + EM SG++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 478 EVTWNTMISGYGLHGHGLEALQLFSEM 504
VT+NT+I G G EA++L EM
Sbjct: 7 VVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.003
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 379 SWNAMIAGYTQNGLTEEAISLFQEMQ 404
++N +I G + G +EA+ L EM+
Sbjct: 9 TYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.004
Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 70 PDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCD 123
PD+ +N +I G+ + ++ + ++K + P+ +TYS ++ C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILI---DGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.004
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 344 SNSSVLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGLTEEAISLF 400
N+ L+ Y +L + E A + ++++ E + ++ + Y + G EEA+ +
Sbjct: 32 DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAY 91
Query: 401 QEMQASKVAPN 411
++ A ++ PN
Sbjct: 92 EK--ALELDPN 100
|
Length = 100 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 784 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.82 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.76 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.76 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.76 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.75 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.73 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.72 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.72 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.71 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.63 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.62 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.59 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.59 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.57 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.52 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.5 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.5 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.43 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.43 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.39 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.39 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.39 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.39 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.37 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.36 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.32 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.31 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.3 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.29 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.28 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.28 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.28 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.21 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.18 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.17 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.16 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.16 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.14 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.14 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.12 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.11 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.11 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.11 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.06 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.06 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.05 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.04 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.03 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.02 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.01 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.01 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.99 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.99 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.98 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.98 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.97 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.92 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.9 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.81 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.77 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.76 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.75 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.68 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.65 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.62 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.62 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.61 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.6 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.57 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.57 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.54 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.53 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.52 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.51 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.45 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.45 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.45 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.42 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.42 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.42 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.41 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.4 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.4 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.37 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.37 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.36 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.32 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.32 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.3 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.3 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.26 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.23 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.23 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.22 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.18 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.17 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.15 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.12 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.08 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.08 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.08 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.07 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.06 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.06 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.04 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.04 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.03 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.01 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.01 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.96 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.93 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.9 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.89 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.87 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.84 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.83 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.81 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.78 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.72 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.7 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.65 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.59 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.59 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.58 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.58 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.56 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.55 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.52 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.51 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.5 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.5 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.47 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.47 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.46 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.46 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.45 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.38 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.37 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.36 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.34 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.33 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.32 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.3 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.28 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.25 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.25 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.24 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.24 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.2 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.2 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.2 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.17 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.12 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.11 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.05 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.04 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.02 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.01 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.95 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.94 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.7 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.7 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.7 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.68 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.66 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.59 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.59 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.56 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.53 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.51 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.51 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.48 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.48 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.45 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.41 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.39 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.38 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.35 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.34 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.31 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.26 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.18 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.16 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.16 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.15 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.14 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.11 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.09 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.06 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.02 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.78 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.67 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.66 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.64 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.62 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.47 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.39 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.21 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.04 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.88 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.8 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.74 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.68 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.58 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.55 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.55 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.38 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.27 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.24 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.18 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.07 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.06 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.99 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 93.97 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.94 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.93 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 93.83 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.79 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.77 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.65 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.64 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.59 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.36 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.2 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.16 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.01 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.81 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.78 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 92.45 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 92.41 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.26 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.13 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.12 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.9 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.8 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.78 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.77 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.09 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.0 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 90.85 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 90.65 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 90.21 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 90.2 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.13 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 89.56 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.51 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 89.4 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 89.23 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 88.97 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 88.71 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 88.48 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 88.37 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.35 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 87.97 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.66 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 87.65 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.54 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.42 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.4 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.29 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.07 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 86.25 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.04 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 85.95 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 85.83 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.83 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 85.37 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.24 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 84.98 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 84.87 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.82 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.71 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 84.01 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 83.58 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 83.29 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 82.74 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 82.02 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 81.89 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 80.99 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 80.69 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 80.66 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 80.57 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-162 Score=1434.65 Aligned_cols=775 Identities=35% Similarity=0.600 Sum_probs=765.9
Q ss_pred CCCCCChhHHHHHHHhccC---chhHHHHHHHHHHhCCCCChhhHhHHHHHhhCCCChhHHHHHhccCCCCCcchHHHHH
Q 044131 3 MKTPQSRNLFLSLLKGAKT---QSQLTQTHAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSIPKPDLFLFNVII 79 (784)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 79 (784)
.|++|+..+|..++++|.. ...|.++|+.+++.|..+++.++|+||++|+++|++++|+++|++|++||+++||+||
T Consensus 80 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li 159 (857)
T PLN03077 80 LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLV 159 (857)
T ss_pred cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHH
Confidence 5789999999999999976 7789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCCh
Q 044131 80 RGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWV 159 (784)
Q Consensus 80 ~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~ 159 (784)
++|++.|++++|++ +|++|...|+.||.+||+++|++|++.+++..++++|..+++.|+.||++++|+||++|+++|++
T Consensus 160 ~~~~~~g~~~~A~~-~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 160 GGYAKAGYFDEALC-LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HHHHhCCCHHHHHH-HHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCH
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHh
Q 044131 160 KSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKL 239 (784)
Q Consensus 160 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 239 (784)
++|+++|++|++||+++||+||.+|+++|++++|+++|++|... |+.||..||+.++.+|+..|+++.|+++|..+.+.
T Consensus 239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 317 (857)
T PLN03077 239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317 (857)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHH
Q 044131 240 GFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIP 319 (784)
Q Consensus 240 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 319 (784)
|+.||..+||+||++|+++|++++|.++|++|+.||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.
T Consensus 318 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~ 397 (857)
T PLN03077 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397 (857)
T ss_pred CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHH
Q 044131 320 VFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISL 399 (784)
Q Consensus 320 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 399 (784)
+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHH
Q 044131 400 FQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEV 479 (784)
Q Consensus 400 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~ 479 (784)
|++|.. +++||..||+++|.+|++.|+++.++++|..+.+.|+.+|..++|+||++|+|||++++|.++|+.+ .+|++
T Consensus 478 f~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~ 555 (857)
T PLN03077 478 FRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVV 555 (857)
T ss_pred HHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChh
Confidence 999986 6999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDIL 559 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l 559 (784)
+||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++.|++++|.++|+.|.+++|+.|+..||+||+++|
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 044131 560 GRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQ 639 (784)
Q Consensus 560 ~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 639 (784)
+|+|+++||++++++||++||..+|++|+++|+.||+.+.|+.+++++++++|+++++|++|+|+|+..|+|++|.++|+
T Consensus 636 ~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~ 715 (857)
T PLN03077 636 GRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRK 715 (857)
T ss_pred HhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchHHHHhhhhhHHHH
Q 044131 640 VVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMMKVHSEK 719 (784)
Q Consensus 640 ~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~k~~~~~~hse~ 719 (784)
.|+++|++|+|||||||++|++|.|++||++||+.++||.+|++|..+|++.||+||++.++ |++||+||+.|++||||
T Consensus 716 ~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~ 794 (857)
T PLN03077 716 TMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSER 794 (857)
T ss_pred HHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 55889999999999999
Q ss_pred HHHHHhhccCCCCCeEEEEeccccCCcccchhhhhhhhcCceEEEecCCccccccCCcCCCCC
Q 044131 720 LAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGD 782 (784)
Q Consensus 720 la~~~~l~~~~~~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 782 (784)
||||||||+||||+||||+||||||+|||+++||||||+||||||||++|||||+||+|||||
T Consensus 795 la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 795 LAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-136 Score=1189.77 Aligned_cols=614 Identities=37% Similarity=0.636 Sum_probs=607.9
Q ss_pred CCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHH
Q 044131 171 EKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTG 250 (784)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 250 (784)
.++.++|+++|.+|.+.|++++|+++|+.|...++..||..||+.++.+|++.++++.|.++|..+++.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 35788999999999999999999999999998746889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHH
Q 044131 251 LVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLT 330 (784)
Q Consensus 251 li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 330 (784)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..+..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 044131 331 NCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAP 410 (784)
Q Consensus 331 ~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 410 (784)
+++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|+++|+.++|+++|++|...|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 044131 411 NPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGL 490 (784)
Q Consensus 411 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 490 (784)
|..||++++.+|++.|.++.|+++|+.+.+.|+.+|..++|+||++|+|+|++++|.++|++|.+||+++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 044131 491 HGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALE 570 (784)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~ 570 (784)
+|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+++|+.|+..||++|+++|+++|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 044131 571 FIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAP 650 (784)
Q Consensus 571 ~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~ 650 (784)
++++|+++|+..+|++|+.+|+.+|+++.|+.+++++++++|+++..|+.|+++|++.|+|++|.++++.|+++|++|.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchHHHHhhhhhHHHHHHHHHhhccCC
Q 044131 651 GCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMMKVHSEKLAIAFGLIATE 730 (784)
Q Consensus 651 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~k~~~~~~hse~la~~~~l~~~~ 730 (784)
||||||+++++|.|++||.+||+.++||++|++|..+|++.||+||+.+++||+++|+||+.|++||||||||||||+||
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~ 643 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTS 643 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeccccCCcccchhhhhhhhcCceEEEecCCccccccCCcCCCCCCC
Q 044131 731 PGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784 (784)
Q Consensus 731 ~~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 784 (784)
||+||||+||||||+|||+|+||||||+||||||||++|||||+||+|||||||
T Consensus 644 ~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 644 EWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-84 Score=769.43 Aligned_cols=575 Identities=27% Similarity=0.443 Sum_probs=559.3
Q ss_pred CCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHH
Q 044131 67 IPKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVG 146 (784)
Q Consensus 67 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~ 146 (784)
.+.++..++|.++++|++.|++++|+. +|+.|...|++|+..+|..++++|.+.+.+..|.++|+.+.+.|..+++.++
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~-l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 124 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALK-LLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHH-HHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHH
Confidence 345778889999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccch
Q 044131 147 AALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQEL 226 (784)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~ 226 (784)
|+||++|+++|+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|... |+.||.+||++++++|+..+++
T Consensus 125 n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccch
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcC
Q 044131 227 RLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASA 306 (784)
Q Consensus 227 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 306 (784)
..++++|..+++.|+.||+.++|+||++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|...|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHH
Q 044131 307 ERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAG 386 (784)
Q Consensus 307 ~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 386 (784)
+.||..||++++.+|+..|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||.+
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~ 363 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHH
Q 044131 387 YTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEA 466 (784)
Q Consensus 387 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A 466 (784)
|++.|++++|+++|++|...|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+|+|++++|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCC
Q 044131 467 RELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFK 546 (784)
Q Consensus 467 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 546 (784)
.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||.+||+.+|.+|++.|.+++|.+++..+.+. |+.
T Consensus 444 ~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~ 521 (857)
T PLN03077 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIG 521 (857)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCC
Confidence 9999999999999999999999999999999999999986 59999999999999999999999999999999864 999
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc--CCCCCcchHHHHHHH
Q 044131 547 PLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFE--LDPENVGYHVLLSNI 624 (784)
Q Consensus 547 p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~ 624 (784)
|+...+++|+++|+++|++++|.++|+++ +||..+|++++.+|.++|+.++|..+++++.+ ..|+ ..+|..+...
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a 598 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCA 598 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHH
Confidence 99999999999999999999999999998 89999999999999999999999999999987 4576 4567777789
Q ss_pred HHhcCChHHHHHHHHHHH-hCCCcc
Q 044131 625 YSAERDYLQAATVRQVVK-KRKLAK 648 (784)
Q Consensus 625 y~~~g~~~~a~~~~~~m~-~~~~~k 648 (784)
|.+.|++++|.++++.|+ +.|+.+
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999998 567764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-72 Score=647.89 Aligned_cols=474 Identities=23% Similarity=0.384 Sum_probs=458.0
Q ss_pred CCCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCC-CCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHH
Q 044131 69 KPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTA-LTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGA 147 (784)
Q Consensus 69 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~ 147 (784)
.++.++|+++|.+|.+.|++++|++ +|+.|...+ ..||..||+.++.+|++.++++.+.++|..|.+.|+.||++++|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~-~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALE-LFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHH-HHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 4577899999999999999999999 999998764 78999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchh
Q 044131 148 ALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELR 227 (784)
Q Consensus 148 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~ 227 (784)
.|+++|+++|++++|+++|++|++||+++||+||.+|++.|++++|+++|++|.+. |+.||..||+.++.+|+..|..+
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 044131 228 LGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAE 307 (784)
Q Consensus 228 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 307 (784)
.|+++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|.+.|+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHH
Q 044131 308 RVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGY 387 (784)
Q Consensus 308 ~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 387 (784)
.||..||++++.+|++.|.++.|.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHH-cCCCCchhhHhHHHHHHHhcCCHHHH
Q 044131 388 TQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKS-RNFESNIYVSTALIDMYAKCGNIVEA 466 (784)
Q Consensus 388 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~Li~~y~k~g~~~~A 466 (784)
++.|+.++|+++|++|...|+.||..||+++|.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999986 69999999999999999999999999
Q ss_pred HHHHhhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC
Q 044131 467 RELFDLMS-HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHG 544 (784)
Q Consensus 467 ~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 544 (784)
.++|++|+ .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|+.+++.|++.|++++|.++++.|.+. |
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g 558 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-G 558 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-C
Confidence 99999998 68999999999999999999999999999875 5564 568999999999999999999999999754 7
Q ss_pred CCC
Q 044131 545 FKP 547 (784)
Q Consensus 545 ~~p 547 (784)
+.+
T Consensus 559 ~~k 561 (697)
T PLN03081 559 LSM 561 (697)
T ss_pred Ccc
Confidence 653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-70 Score=634.20 Aligned_cols=525 Identities=16% Similarity=0.188 Sum_probs=480.8
Q ss_pred CCCChhhHhHHHHHhhCCCChhHHHHHhccCCCCCcchHH-----HHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccH
Q 044131 37 FQNDLSTVTKLAHRLSDFKATCYARALFFSIPKPDLFLFN-----VIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTY 111 (784)
Q Consensus 37 ~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~ 111 (784)
-.++...+..+++.|+++|++++|+++|+.|+.++++.|+ .++.+|.+.|...+|+. +|+.|.. ||..||
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~-lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFR-FAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHH-HHHHcCC----CCHHHH
Confidence 3467888999999999999999999999999987776655 55667999999999999 9999975 999999
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCC----CCCcccHHHHHHHHHcC
Q 044131 112 SFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMP----EKDTVLWNSMISGLMKN 187 (784)
Q Consensus 112 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~ 187 (784)
+.+|++|++.++++.|.++|+.|.+.|+.||.++||+||.+|+++|++++|.++|++|. .||+++||+||.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999998 58999999999999999
Q ss_pred CCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhcCChHHHH
Q 044131 188 CCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLK--LGFHDHVYVLTGLVSFYSKCGEVERAE 265 (784)
Q Consensus 188 g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~ 265 (784)
|++++|+++|++|... |+.||..||+.++.+|++.|+++.|.++|..|.+ .|+.||..+|++||++|+++|++++|.
T Consensus 521 G~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred cCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999 9999999999999999999999999999999987 689999999999999999999999999
Q ss_pred HHHhcCCC----CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhC
Q 044131 266 LLFRDIVR----PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSG 341 (784)
Q Consensus 266 ~~f~~~~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g 341 (784)
++|+.|.+ |+..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|..|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999954 67799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 044131 342 IVSNSSVLTALSTVYSRLNEMEAARKLFDESS----EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSS 417 (784)
Q Consensus 342 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 417 (784)
+.||..+|++|+++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|...|+.||..||++
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999995 68999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHH----HhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC
Q 044131 418 ILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMY----AKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGH 493 (784)
Q Consensus 418 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y----~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 493 (784)
++.+|++.|+++.|.++|..|.+.|+.||..+|++|++++ .+++...++...|+.+...+...|+
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~----------- 828 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT----------- 828 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH-----------
Confidence 9999999999999999999999999999999999999874 4555555555555544444444554
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 044131 494 GLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIK 573 (784)
Q Consensus 494 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~ 573 (784)
++|+.+|++|++.|+.||.+||+.+|.++...+..+.+..+++.|... +..|+..+|+++++.+++. .++|..+++
T Consensus 829 -~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~ 904 (1060)
T PLN03218 829 -SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLE 904 (1060)
T ss_pred -HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHH
Confidence 469999999999999999999999997777778888887777776432 6677788999999998543 478999999
Q ss_pred hC---CCCCCHH
Q 044131 574 GL---AVEPGPA 582 (784)
Q Consensus 574 ~m---~~~p~~~ 582 (784)
+| ++.|+..
T Consensus 905 em~~~Gi~p~~~ 916 (1060)
T PLN03218 905 EAASLGVVPSVS 916 (1060)
T ss_pred HHHHcCCCCCcc
Confidence 88 4677654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-66 Score=600.54 Aligned_cols=550 Identities=14% Similarity=0.181 Sum_probs=483.1
Q ss_pred CCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCcccH-----HHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHH
Q 044131 140 GSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLW-----NSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVA 214 (784)
Q Consensus 140 ~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~ 214 (784)
.++...+..++..|+++|++++|+++|++|+.++.+.| +.++.+|.+.|..++|+++|+.|. . ||..||+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~---~--pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR---N--PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC---C--CCHHHHH
Confidence 56778889999999999999999999999998776655 456677999999999999999986 2 9999999
Q ss_pred hHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----CCCeeeHHHHHHHHHhCC
Q 044131 215 AVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIV----RPDLISCNAMISGYTCNG 290 (784)
Q Consensus 215 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~~~g 290 (784)
.++++|++.|+++.|.++|..|.+.|+.||..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999999999999999996 589999999999999999
Q ss_pred CchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHH--hCCCcchHHHHHHHHHHHhcCCHHHHHHH
Q 044131 291 KTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLK--SGIVSNSSVLTALSTVYSRLNEMEAARKL 368 (784)
Q Consensus 291 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 368 (784)
++++|+++|++|...|+.||..||+.+|.+|++.|+++.|.++|..|.+ .|+.||..+|++|+++|+++|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 67999999999999999999999999999
Q ss_pred HhhcCCC----ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCC
Q 044131 369 FDESSEK----SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFE 444 (784)
Q Consensus 369 f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 444 (784)
|+.|.+. +..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999864 568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHhHHHHHHHhcCCHHHHHHHHhhcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044131 445 SNIYVSTALIDMYAKCGNIVEARELFDLMS----HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVL 520 (784)
Q Consensus 445 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 520 (784)
||..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999999995 6999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHH----hcC-------------------CHHHHHHHHHhC--
Q 044131 521 YACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILG----RAG-------------------QLEKALEFIKGL-- 575 (784)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~----r~g-------------------~~~eA~~~~~~m-- 575 (784)
.+|++.|++++|.++|+.|.+. |+.||..+|+++++++. +++ ..++|..+|++|
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 9999999999999999999755 99999999999998743 222 347899999999
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-CCCCCcchHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCccCCcc
Q 044131 576 -AVEPGPAVWGALLGACMIHKDTNLARVASEKLFE-LDPENVGYHVLLSNIYSAERDY-LQAATVRQVVKKRKLAKAPGC 652 (784)
Q Consensus 576 -~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-l~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~~m~~~~~~k~~g~ 652 (784)
++.||..+|+++++++...+..+.+..+++.+.. -.+.+...|..|.+-+ |++ ++|..+++.|.+.|+.+....
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~~~ 917 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSVSF 917 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCccc
Confidence 5899999999999777788888888888876542 3345566788887765 444 589999999999999754321
Q ss_pred -cEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccc
Q 044131 653 -TLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHD 703 (784)
Q Consensus 653 -s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~ 703 (784)
.| .+-=.+|.|-.|- .-..+...|..|...+..--..|.....+|+
T Consensus 918 ~~~-~~~~d~~~~~~~a----a~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~ 964 (1060)
T PLN03218 918 KKS-PIVIDAEELPVFA----AEVYLLTILKGLKHRLAAGAKLPNVTILLPT 964 (1060)
T ss_pred ccC-ceEEEcccCcchh----HHHHHHHHHHHHHHHHhccCcCCcceeeecc
Confidence 11 1112233443321 1122344555665555433366776666776
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=289.31 Aligned_cols=106 Identities=66% Similarity=1.041 Sum_probs=99.6
Q ss_pred cccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchHHH--------HhhhhhHHHHHHH
Q 044131 651 GCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEK--------ELMMKVHSEKLAI 722 (784)
Q Consensus 651 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~k--------~~~~~~hse~la~ 722 (784)
||||+++ |.|++||.+||+. ++..++...||.|++..++||++++++ +..+++|||||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 8999987 9999999999998 455677889999999999999988876 6799999999999
Q ss_pred HHhhccCCCCCeEEEEecc-ccCCcccchhhhhhhhcCceEEEecCCcccccc
Q 044131 723 AFGLIATEPGTEIRIIKNL-RVCLDCHTATKFISKVTGRVIVVRDANRFHHFK 774 (784)
Q Consensus 723 ~~~l~~~~~~~~~~~~kn~-r~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~ 774 (784)
||||+++ ||+||+ |||+|||+|+|+||+++||+|||||++||||||
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 999999 999999999999999999999999999999997
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=328.52 Aligned_cols=579 Identities=11% Similarity=0.003 Sum_probs=315.8
Q ss_pred HhhCCCChhHHHHHhccCC---CCCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchH
Q 044131 50 RLSDFKATCYARALFFSIP---KPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSI 126 (784)
Q Consensus 50 ~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 126 (784)
.|...|+.+.|...|+... ..+...+..+...+.+.|++++|+. .++.+.... +.+...+..+...+...|+.+.
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 381 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIA-TLSPALGLD-PDDPAALSLLGEAYLALGDFEK 381 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHH-HHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3444455555555544431 1223334444445555555555555 554444321 2233344444455555555555
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCC---CcccHHHHHHHHHcCCCchHHHHHHHHHHHc
Q 044131 127 GVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEK---DTVLWNSMISGLMKNCCFQDSIWVFGDMVRN 203 (784)
Q Consensus 127 a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 203 (784)
|...+..+.+.. +.+...+..+...|...|+.++|.+.|+..... +...+..++..|.+.|++++|+++++++...
T Consensus 382 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 460 (899)
T TIGR02917 382 AAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK 460 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 555555555443 223344445555555555555555555544321 2233444555555556666666655555542
Q ss_pred CCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHH
Q 044131 204 GGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR---PDLISCN 280 (784)
Q Consensus 204 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~ 280 (784)
.+++..++..+...+...|+.+.|.+.+..+++.. +.+...+..+..+|.+.|++++|.+.|+++.. .+..++.
T Consensus 461 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 537 (899)
T TIGR02917 461 --QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAIL 537 (899)
T ss_pred --CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 33344455555555666666666666666655432 22344455555666666666666666655532 2344555
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC
Q 044131 281 AMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLN 360 (784)
Q Consensus 281 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g 360 (784)
.+...+.+.|+.++|..+|+++...+ +.+...+..+...+...|+++.+..++..+.+.. +.+..++..+...|.+.|
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 55566666666666666666655442 2233444555555666666666666666555432 344555666666666666
Q ss_pred CHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHH
Q 044131 361 EMEAARKLFDESSE---KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHEL 437 (784)
Q Consensus 361 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~ 437 (784)
++++|...|+.+.+ .+...|..+...|.+.|++++|...|+++.... +.+..++..+...+...|+++.|..+++.
T Consensus 616 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666655432 244455566666666666666666666655432 22345555555666666666666666666
Q ss_pred HHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044131 438 VKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS--HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVT 515 (784)
Q Consensus 438 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 515 (784)
+.+.. +.+...+..+...|.+.|++++|.+.|+.+. .|+..++..++.++.+.|+.++|.+.++++.+.. +.+...
T Consensus 695 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~ 772 (899)
T TIGR02917 695 LQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVL 772 (899)
T ss_pred HHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 65543 3445555556666666666666666666554 2444555556666666666666666666665542 334455
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 044131 516 FLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMI 593 (784)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~ 593 (784)
+..+...|...|+.++|.++|+.+.+. -+++...+..+..++.+.|+ ++|+++++++ ...| ++.+|..+..++..
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 555556666666666666666666532 12335556666666666666 5566666554 2233 34455566666666
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 594 HKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 594 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
.|++++|...++++++.+|.++..+..++.+|.+.|++++|.++++.|.
T Consensus 850 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666666666666553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=322.36 Aligned_cols=588 Identities=12% Similarity=0.054 Sum_probs=348.8
Q ss_pred hhhHhHHHHHhhCCCChhHHHHHhccCCC--C-CcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcc-cHHHHHH
Q 044131 41 LSTVTKLAHRLSDFKATCYARALFFSIPK--P-DLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNF-TYSFVLS 116 (784)
Q Consensus 41 ~~~~~~l~~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~-t~~~ll~ 116 (784)
..++..+...|...|++++|...|+.+.+ | +...+......+...|++++|+. .++...+.+ |+.. .+..+-.
T Consensus 227 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~l~~~--~~~~~~~~~~~~ 303 (899)
T TIGR02917 227 PAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARE-TLQDALKSA--PEYLPALLLAGA 303 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHH-HHHHHHHhC--CCchhHHHHHHH
Confidence 34444445555555555555555544321 1 11111111122234455555555 554444322 2211 1122223
Q ss_pred HHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHH
Q 044131 117 AASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPE---KDTVLWNSMISGLMKNCCFQDS 193 (784)
Q Consensus 117 ~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 193 (784)
.+...|+++.|...+..+++.. +.+......+...+.+.|++++|...++.+.. .+...|+.+...+.+.|++++|
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3445666777777777666654 33455566677777777777777777776653 2455677777777777777777
Q ss_pred HHHHHHHHHcCCCCC-ChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 044131 194 IWVFGDMVRNGGTWL-DSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIV 272 (784)
Q Consensus 194 ~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 272 (784)
.+.|+++.+. .| +...+..+...+...|+.+.|...+..+.+.... +......++..|.+.|++++|.++++.+.
T Consensus 383 ~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 458 (899)
T TIGR02917 383 AEYLAKATEL---DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLE 458 (899)
T ss_pred HHHHHHHHhc---CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7777777643 23 3334444555555666666666666665554321 12233334444444555555554444442
Q ss_pred C---CCeeeHHHHHHHHHhCCCchHHHH----------------------------------HHHHHHHcCCCCChhhHH
Q 044131 273 R---PDLISCNAMISGYTCNGKTESSLR----------------------------------LFRQLLASAERVNSSTIV 315 (784)
Q Consensus 273 ~---~d~~~~~~li~~~~~~g~~~~A~~----------------------------------l~~~m~~~g~~p~~~t~~ 315 (784)
. .+..+|+.+...|...|++++|.+ .|+++.... +.+..++.
T Consensus 459 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 537 (899)
T TIGR02917 459 KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAIL 537 (899)
T ss_pred HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHH
Confidence 2 233344444444444444444444 444444332 12333444
Q ss_pred hHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCC
Q 044131 316 GLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGL 392 (784)
Q Consensus 316 ~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 392 (784)
.+...+...|+.+.+...+..+.+.+ +.+...+..+...|.+.|++++|..+++.+.. .+...|..+...|.+.|+
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 44444445555555555555544433 23344455555556666666666666655432 244566666666666666
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhh
Q 044131 393 TEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDL 472 (784)
Q Consensus 393 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 472 (784)
+++|+..|+++.... +.+...+..+..++...|++++|..++..+.+.. +.+...+..++..+.+.|++++|.++++.
T Consensus 617 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 617 LNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666665532 2234455556666666666666666666666543 34455666666666666777777666666
Q ss_pred cCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCc
Q 044131 473 MSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLA 549 (784)
Q Consensus 473 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 549 (784)
+.+ .+...|..+...+...|++++|++.|+++... .|+..++..+..++.+.|+.++|.+.++.+.+. .+.+.
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~ 770 (899)
T TIGR02917 695 LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDA 770 (899)
T ss_pred HHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH
Confidence 652 34556666777777777777777777777764 355566667777777788888888887777653 23346
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 044131 550 EHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSA 627 (784)
Q Consensus 550 ~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 627 (784)
..+..+...|.+.|++++|.+.++++. .++++.++..+...+...|+ +.|...+++++++.|+++..+..++.+|..
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 677778888888888888888887762 34466788888888888888 778888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHhCC
Q 044131 628 ERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 628 ~g~~~~a~~~~~~m~~~~ 645 (784)
.|++++|.+.++.+.+.+
T Consensus 850 ~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIA 867 (899)
T ss_pred cCCHHHHHHHHHHHHhhC
Confidence 888888888888877643
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-23 Score=250.08 Aligned_cols=603 Identities=12% Similarity=0.040 Sum_probs=442.9
Q ss_pred chhHHHHHHHHHHhCCCC-ChhhHhHHHHHhhCCCChhHHHHHhccCCC--CCcc-hH----------------HHHHHH
Q 044131 22 QSQLTQTHAQIIIHGFQN-DLSTVTKLAHRLSDFKATCYARALFFSIPK--PDLF-LF----------------NVIIRG 81 (784)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~--~~~~-~~----------------~~li~~ 81 (784)
...+++...+++. +.| |+.++..+...+.+.|+.++|.+.+++..+ |+.. .+ ..+.+.
T Consensus 44 ~d~a~~~l~kl~~--~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~l 121 (1157)
T PRK11447 44 EDLVRQSLYRLEL--IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARL 121 (1157)
T ss_pred hHHHHHHHHHHHc--cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 3344444444443 233 577788888999999999999999998743 3322 22 222345
Q ss_pred HhcCCCchhHHHHHHHHHhhCCCCCCccc-HHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChH
Q 044131 82 FSNNEMPKSSICFYTHLRKNTALTPDNFT-YSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVK 160 (784)
Q Consensus 82 ~~~~g~~~~a~~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~ 160 (784)
+...|++++|++ .++..... .+|+... ...........++.++|...++.+++.. +.+......|..+|.+.|+.+
T Consensus 122 l~~~g~~~eA~~-~~~~~l~~-~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 122 LATTGRTEEALA-SYDKLFNG-APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHhCCCHHHHHH-HHHHHccC-CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHH
Confidence 788999999999 99888764 2333221 1111122335688999999999999885 446778889999999999999
Q ss_pred HHHHHhccCCCCCc------ccH-----------------HHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHH
Q 044131 161 SARKVFDKMPEKDT------VLW-----------------NSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVL 217 (784)
Q Consensus 161 ~A~~~f~~~~~~~~------~~~-----------------~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll 217 (784)
+|.+.|+++..... ..| ...+..+-.....++|...+.++... ...|+... ...-
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~-~~dp~~~~-~~~G 276 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ-LADPAFRA-RAQG 276 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh-ccCcchHH-HHHH
Confidence 99999998754221 112 11111122222234555555555433 22333221 1223
Q ss_pred HHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCe---eeHHHH----------
Q 044131 218 PAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR--PDL---ISCNAM---------- 282 (784)
Q Consensus 218 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~d~---~~~~~l---------- 282 (784)
.++...|++++|...+..+++.. +.+..++..|...|.+.|++++|...|++..+ |+. ..|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 45667899999999999999864 34678889999999999999999999998754 322 123322
Q ss_pred --HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC
Q 044131 283 --ISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLN 360 (784)
Q Consensus 283 --i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g 360 (784)
...+.+.|++++|+..|++..... +.+...+..+-..+...|+++.|.+.+..+++.. +.+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 335678999999999999998863 2345566677888999999999999999999875 345566777878775 46
Q ss_pred CHHHHHHHHhhcCCCC------------hhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhhCc
Q 044131 361 EMEAARKLFDESSEKS------------LASWNAMIAGYTQNGLTEEAISLFQEMQASKVAP-NPVTVSSILSACAQLGA 427 (784)
Q Consensus 361 ~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~ 427 (784)
+.++|...++.++... ...+..+...+...|++++|++.|++..+. .| +...+..+...+...|+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 7899999998776432 123555677888999999999999999875 45 45566778888999999
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCC----CHH---------HHHHHHHHHHHcCCH
Q 044131 428 ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHK----SEV---------TWNTMISGYGLHGHG 494 (784)
Q Consensus 428 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~----~~~---------~~~~li~~~~~~g~~ 494 (784)
+++|...++.+++.. +.+......+...+.+.|+.++|...++.+... +.. .+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999998754 445555556666778899999999999988632 111 123456678899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHH
Q 044131 495 LEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIK 573 (784)
Q Consensus 495 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~ 573 (784)
++|+.+++. .+++...+..+...+...|+.++|.+.|+...+. .|+ ...+..++.+|...|++++|++.++
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999882 3455667778888999999999999999999853 565 7788899999999999999999999
Q ss_pred hCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcc------hHHHHHHHHHhcCChHHHHHHHHHHH-hC
Q 044131 574 GLA-VEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVG------YHVLLSNIYSAERDYLQAATVRQVVK-KR 644 (784)
Q Consensus 574 ~m~-~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~m~-~~ 644 (784)
..+ ..|+ ..++..+..++...|+.++|...++++++..|+++. .+..++.+|...|++++|...++... ..
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 875 4554 557888888999999999999999999998776553 56667999999999999999977654 33
Q ss_pred CC
Q 044131 645 KL 646 (784)
Q Consensus 645 ~~ 646 (784)
|+
T Consensus 742 ~~ 743 (1157)
T PRK11447 742 GI 743 (1157)
T ss_pred CC
Confidence 44
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-22 Score=248.93 Aligned_cols=585 Identities=11% Similarity=0.050 Sum_probs=433.0
Q ss_pred HHHHHhhCCCChhHHHHHhccCC---CCCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHH----------
Q 044131 46 KLAHRLSDFKATCYARALFFSIP---KPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYS---------- 112 (784)
Q Consensus 46 ~l~~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~---------- 112 (784)
..++.+...++.+.|+..++++. ..|...+..++..+.+.|+.++|.+ .+++..+. .|+...+.
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~-~l~~l~~~--~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQK-LLDRLSQL--APDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHH-HHHHHHhh--CCCChHHHHHHHHHHhcC
Confidence 34567778899999999998753 3456678888889999999999999 99988773 45554332
Q ss_pred -------HHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHH-HHHHHhhcCCChHHHHHHhccCCCC---CcccHHHHH
Q 044131 113 -------FVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGA-ALVDLYFKFSWVKSARKVFDKMPEK---DTVLWNSMI 181 (784)
Q Consensus 113 -------~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~-~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li 181 (784)
...+.+...|+.++|.+.++.+.+.. +++..... .+.......|+.++|++.|+++... +...+..+.
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA 188 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLA 188 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 22235678899999999999998765 33332211 1222233469999999999998753 456788889
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCC----------------CChh---hHHhHHHHHhcccchhHHHHHHHHHHHhCCC
Q 044131 182 SGLMKNCCFQDSIWVFGDMVRNGGTW----------------LDST---SVAAVLPAVAEVQELRLGMEIQCLGLKLGFH 242 (784)
Q Consensus 182 ~~~~~~g~~~~A~~l~~~m~~~~g~~----------------pd~~---t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 242 (784)
..+.+.|++++|++.|+++... ... ++.. .+...+..+........+...+....+....
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~-~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKS-PAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhC-CCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 9999999999999999998654 110 0000 1111122222222334444555444433333
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCh-hhHH---
Q 044131 243 DHVYVLTGLVSFYSKCGEVERAELLFRDIVR---PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNS-STIV--- 315 (784)
Q Consensus 243 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~--- 315 (784)
|+.. ...+...+...|++++|...|++..+ .|...+..+...|.+.|++++|+..|++..+....... ..+.
T Consensus 268 p~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 3322 23445677889999999999998744 35677888999999999999999999999876432211 1111
Q ss_pred ---------hHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHH
Q 044131 316 ---------GLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAM 383 (784)
Q Consensus 316 ---------~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~l 383 (784)
..-..+...|++++|...+..+++.. +.+...+..|...|...|++++|.+.|++... .+...+..+
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 12335668899999999999999875 45667788899999999999999999998763 345577777
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHH
Q 044131 384 IAGYTQNGLTEEAISLFQEMQASKVA--------PNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALID 455 (784)
Q Consensus 384 i~~~~~~g~~~~A~~l~~~m~~~g~~--------pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 455 (784)
...|. .++.++|+.+++.+...... .....+......+...|++++|.+.++.+++.. +.+..++..+..
T Consensus 426 ~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~ 503 (1157)
T PRK11447 426 ANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 77775 46789999988775432100 001234445566778999999999999999875 456778888999
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHH
Q 044131 456 MYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGV---------TFLSVLYAC 523 (784)
Q Consensus 456 ~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~---------t~~~ll~a~ 523 (784)
.|.+.|++++|...|+++.+ .+...+..+...+...|+.++|+..++++......++.. .+..+...+
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999998752 355566666666788999999999998865433223221 234556778
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 044131 524 SHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLAR 601 (784)
Q Consensus 524 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~ 601 (784)
...|+.++|.++++. .+++...+..+.+.+.+.|++++|++.+++. ...| ++..+..+...+...|+.++|+
T Consensus 584 ~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 899999999999872 2345667788999999999999999999887 3555 5679999999999999999999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044131 602 VASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 602 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 645 (784)
..++++.+..|+++..+..++.+|...|++++|.++++.+....
T Consensus 658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999999999887643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-19 Score=210.76 Aligned_cols=557 Identities=10% Similarity=0.023 Sum_probs=339.7
Q ss_pred hCCCChhHHHHHhccCC---CCCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchHHH
Q 044131 52 SDFKATCYARALFFSIP---KPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGV 128 (784)
Q Consensus 52 ~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 128 (784)
...|+.++|...|+..- ..+...+..|.+.|...|++++|+. ..++..+ ..|+...|..++... ++...+.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~-~~~kAv~--ldP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARL-LLEDQLK--RHPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHh--cCcccHHHHHHHHHh---ccChhHH
Confidence 34599999999999753 2346678889999999999999999 8888766 456666666665433 8888999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHH--------hhcCCChHHHHHHhccCCCCC--cc-cHHHHHHHHHcCCCchHHHHHH
Q 044131 129 LLHGHAIVSGYGSDLFVGAALVDL--------YFKFSWVKSARKVFDKMPEKD--TV-LWNSMISGLMKNCCFQDSIWVF 197 (784)
Q Consensus 129 ~~~~~~~~~g~~~d~~~~~~li~~--------y~~~g~~~~A~~~f~~~~~~~--~~-~~~~li~~~~~~g~~~~A~~l~ 197 (784)
.+++.+.+.. +.+..++..+... |.+.+...+|++ .+...++ .. ..-.+...|.+.|++++|++++
T Consensus 129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 9999999886 3344555555555 888877777777 3333343 33 3444488999999999999999
Q ss_pred HHHHHcCCCCCChhh-HHhHHHHHhc-ccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--
Q 044131 198 GDMVRNGGTWLDSTS-VAAVLPAVAE-VQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR-- 273 (784)
Q Consensus 198 ~~m~~~~g~~pd~~t-~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-- 273 (784)
.++.+. + |.... ...+-.++.. .++ +.+..++.. .+..|+.+...+.+.|.+.|+.++|.+++++++.
T Consensus 206 ~~L~k~-~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 206 NEARQQ-N--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHhc-C--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 999976 3 33333 4445556665 355 666666432 4447889999999999999999999999998843
Q ss_pred ---CCeeeHHH------------------------------HHHHHHhCCCchHHHHHHHHHHHcCCCCChhhH------
Q 044131 274 ---PDLISCNA------------------------------MISGYTCNGKTESSLRLFRQLLASAERVNSSTI------ 314 (784)
Q Consensus 274 ---~d~~~~~~------------------------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~------ 314 (784)
|+..+|-- ++.-+.+.++++-+.++.. ..|.....
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~ 351 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERYAV 351 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHHhh
Confidence 22222211 1333445555554443311 22222211
Q ss_pred ----------------------------HhHHHhhcCCCChhHHHHHHHHHHHh-C-CCcchHHHHHHHHHHHhcCCH--
Q 044131 315 ----------------------------VGLIPVFYPFGHLHLTNCIHSFCLKS-G-IVSNSSVLTALSTVYSRLNEM-- 362 (784)
Q Consensus 315 ----------------------------~~ll~~~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~~~~Li~~y~~~g~~-- 362 (784)
.-+--.....|+.++|.+++...... + -..+..+.+-|++.|.+.+.+
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred ccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 11111122344555555555554431 1 112344555666666666552
Q ss_pred -HHHHHH-------------------------HhhcC---CC--ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 044131 363 -EAARKL-------------------------FDESS---EK--SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN 411 (784)
Q Consensus 363 -~~A~~~-------------------------f~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 411 (784)
..+..+ +.... .. +...|..+..++.. ++.++|+..|.+.... .|+
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd 508 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPD 508 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCc
Confidence 222111 11111 11 34455556555555 5666677766665543 355
Q ss_pred HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHH---HHHHH
Q 044131 412 PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNT---MISGY 488 (784)
Q Consensus 412 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~---li~~~ 488 (784)
......+..++...|+++.|...++.+... +|+......+...+.+.|++++|...|+...+.+...++. +....
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l 586 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQR 586 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 444333344445667777777777665443 2333334455566666777777777776655322222222 22222
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHH
Q 044131 489 GLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEK 567 (784)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~e 567 (784)
...|++++|+..|++..+ ..|+...+..+..++.+.|+.++|...|+... .+.|+ ...+..+...|...|++++
T Consensus 587 ~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 587 YIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAAL---ELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 334777777777777766 34566666666667777777777777777665 33454 5556666666777777777
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 568 ALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 568 A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
|++.+++. ...| ++..|..+..++...|+++.|+..++++++++|++.......+++..+..+++.+.+-++.-
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 77776654 2444 34466777777777777777777777777777777777777777777777666666655443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-18 Score=203.64 Aligned_cols=546 Identities=10% Similarity=0.015 Sum_probs=382.2
Q ss_pred HHHHHHHH--hcCCCchhHHHHHHHHHhhCCCCCC-cccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHH
Q 044131 75 FNVIIRGF--SNNEMPKSSICFYTHLRKNTALTPD-NFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVD 151 (784)
Q Consensus 75 ~~~li~~~--~~~g~~~~a~~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~ 151 (784)
+--+..++ ...|++++|+. .|+...+ +.|+ ...+..+.+.+...|+.++|....+..++.. +.|...+..|.
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~-~l~~Al~--~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La- 119 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIR-EFEYIHQ--QVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLA- 119 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHH-HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHH-
Confidence 33444444 34599999999 9998876 4454 4566777889999999999999999999885 34555555552
Q ss_pred HhhcCCChHHHHHHhccCCC--CC-cccHHHHHHH--------HHcCCCchHHHHHHHHHHHcCCCCCChhhHHhH-HHH
Q 044131 152 LYFKFSWVKSARKVFDKMPE--KD-TVLWNSMISG--------LMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAV-LPA 219 (784)
Q Consensus 152 ~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~--------~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l-l~a 219 (784)
.+ ++.++|..+++++.. |+ ...+..+... |.+.+...+++ + .... ...|+..+.... ...
T Consensus 120 ~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL---~-lr~~-~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 120 AI---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQL---N-DATF-AASPEGKTLRTDLLQR 191 (987)
T ss_pred Hh---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHH---H-Hhhh-CCCCCcHHHHHHHHHH
Confidence 22 889999999999974 32 3333333333 66664444444 4 3322 444456655555 899
Q ss_pred HhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHH
Q 044131 220 VAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSK-CGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRL 298 (784)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l 298 (784)
+...++++.+..++..+.+.+.. +..-...|...|.. .++ +.|..+++...+.|...+..+...|.+.|+.++|.++
T Consensus 192 Y~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~ 269 (987)
T PRK09782 192 AIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHY 269 (987)
T ss_pred HHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999998744 45556777778888 477 9999998876667888999999999999999999999
Q ss_pred HHHHHHcCCC-CChhhHHhHHH------------------------------hhcCCCChhHHHHHHHH--------HHH
Q 044131 299 FRQLLASAER-VNSSTIVGLIP------------------------------VFYPFGHLHLTNCIHSF--------CLK 339 (784)
Q Consensus 299 ~~~m~~~g~~-p~~~t~~~ll~------------------------------~~~~~~~~~~a~~i~~~--------~~~ 339 (784)
++++...-.. |+..++.-.+. .+.+.++.+.+.++.+. +.-
T Consensus 270 L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 349 (987)
T PRK09782 270 LIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERY 349 (987)
T ss_pred HHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHH
Confidence 9998654322 44444333322 22223333333322110 000
Q ss_pred hCC--------------------CcchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-C-----ChhHHHHHHHHHHhCCC-
Q 044131 340 SGI--------------------VSNSSVLTALSTVYSRLNEMEAARKLFDESSE-K-----SLASWNAMIAGYTQNGL- 392 (784)
Q Consensus 340 ~g~--------------------~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~- 392 (784)
.+. +.+....--+.-...+.|+.++|.++|+..-. + +...-+-++..|.+.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 429 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYL 429 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcc
Confidence 000 11222222222333456788888888877544 1 22234466777777665
Q ss_pred --hhHHHHH------------HHHH----------Hh-CCCCC---CHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCC
Q 044131 393 --TEEAISL------------FQEM----------QA-SKVAP---NPVTVSSILSACAQLGAISLGKWVHELVKSRNFE 444 (784)
Q Consensus 393 --~~~A~~l------------~~~m----------~~-~g~~p---d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 444 (784)
..+++.+ ..+. .. .+..| +...+..+..++.. +..++|...+.......
T Consensus 430 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-- 506 (987)
T PRK09782 430 ATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-- 506 (987)
T ss_pred cchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--
Confidence 3344333 1111 11 11223 34455555544444 78888988777776653
Q ss_pred CchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 044131 445 SNIYVSTALIDMYAKCGNIVEARELFDLMSH--KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSG-VTFLSVLY 521 (784)
Q Consensus 445 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~ 521 (784)
|+......+...+...|++++|...|+++.. ++...|..+...+.+.|+.++|...|++..+.. |+. ..+..+..
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~ 584 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHA 584 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHH
Confidence 4443333445555789999999999997763 555667778888999999999999999999854 444 33444445
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 044131 522 ACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDTNL 599 (784)
Q Consensus 522 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~ 599 (784)
.....|++++|...|++.. .+.|+...|..+..++.+.|+.++|+..+++. ...|+ ...+..+..++...|+.++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 5667799999999999987 45788889999999999999999999999887 46665 5588888889999999999
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 600 ARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 600 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
|+..++++++++|+++..+..++.+|...|+.++|...++...+
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887765
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-19 Score=182.84 Aligned_cols=449 Identities=12% Similarity=0.105 Sum_probs=352.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHH-HHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 044131 177 WNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLP-AVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFY 255 (784)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 255 (784)
-..|..-..+.|++++|.+.-...-++ .|+..--..++. .+.+..+++...+--...++.. +--..+|+.+.+.+
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~---d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE---DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANIL 126 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc---CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHH
Confidence 344555566778888887765444322 222222222222 2333444444333333333321 22456788899999
Q ss_pred HhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhh-cCCCChhHHH
Q 044131 256 SKCGEVERAELLFRDIVR---PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVF-YPFGHLHLTN 331 (784)
Q Consensus 256 ~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~~a~ 331 (784)
-..|++++|...++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++. .|+.+...+-+..+ ...|.+.++.
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 999999999999998865 35668889999999999999999999988764 56665544433333 3467888888
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 044131 332 CIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSL---ASWNAMIAGYTQNGLTEEAISLFQEMQASKV 408 (784)
Q Consensus 332 ~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 408 (784)
.-+...++.. +.-..+|+.|...+-..|++..|...|++...-|+ ..|-.|-..|...+.+++|+..|.+....
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 8888777654 23346788899999999999999999998765443 47888999999999999999999888764
Q ss_pred CCC-HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHH
Q 044131 409 APN-PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTM 484 (784)
Q Consensus 409 ~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~l 484 (784)
.|+ .+.+..+...|-..|.++.|+..+++.++.. +.-+..|+.|..++-..|++.+|.+.+.+... .-..+.+.|
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 665 4567777777889999999999999998764 33467899999999999999999999998762 346688999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhc
Q 044131 485 ISGYGLHGHGLEALQLFSEMLHSGIRPSG-VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRA 562 (784)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~ 562 (784)
...|...|..++|..+|....+ +.|.- ..++.|...|-..|++++|...+++.+ .|.|+ ...|+.|...|-..
T Consensus 361 gni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHh
Confidence 9999999999999999999988 66764 468899999999999999999999887 78999 78999999999999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 044131 563 GQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQV 640 (784)
Q Consensus 563 g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 640 (784)
|+.++|...+.+. .+.|. +...+.|.+.++..|++.+|+..|+.+++++|+.+..|-.|...+.-..+|.+-.+.+++
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 9999999999876 57786 448999999999999999999999999999999999999999998888999885444433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-18 Score=185.53 Aligned_cols=306 Identities=15% Similarity=0.112 Sum_probs=209.5
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCCC-hhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcC
Q 044131 184 LMKNCCFQDSIWVFGDMVRNGGTWLD-STSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHD---HVYVLTGLVSFYSKCG 259 (784)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g 259 (784)
+...|++++|++.|+++.+. .|+ ..++..+...+...|+++.|..++..+++.+..+ ...++..+...|.+.|
T Consensus 45 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKV---DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHhcCChHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 33445555555555555532 222 2244444444455555555555555544432111 1245677888888889
Q ss_pred ChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHH
Q 044131 260 EVERAELLFRDIVR---PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSF 336 (784)
Q Consensus 260 ~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~ 336 (784)
++++|..+|+++.+ .+..+++.++..+.+.|++++|++.|+.+...+..++...
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 99999998888855 4566788888888899999999999888876542221100
Q ss_pred HHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH
Q 044131 337 CLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPV 413 (784)
Q Consensus 337 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 413 (784)
....+..+...|.+.|++++|.+.|+++.+ .+...+..+...|.+.|++++|.++|+++...+......
T Consensus 179 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 179 --------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred --------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence 012244566777888888888888887653 245577788888999999999999999988653222245
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHH-
Q 044131 414 TVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS--HKSEVTWNTMISGYGL- 490 (784)
Q Consensus 414 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~- 490 (784)
++..+..++...|++++|...+..+.+.. |+...+..++..|.+.|++++|..+|+++. .|+..+++.++..+..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhc
Confidence 67777888888888888888888887753 455566788888888888888888888765 4778888887777664
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 044131 491 --HGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVRE 531 (784)
Q Consensus 491 --~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 531 (784)
+|+.++++.+|++|.+.+++|++. .+|++.|...+
T Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~~~ 365 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFTAR 365 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCCCc
Confidence 568888888888888877777766 44777775443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.9e-18 Score=173.51 Aligned_cols=413 Identities=13% Similarity=0.129 Sum_probs=328.2
Q ss_pred HHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCchH
Q 044131 218 PAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR---PDLISCNAMISGYTCNGKTES 294 (784)
Q Consensus 218 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~ 294 (784)
.-.-+.|++++|++--..+-... +.+....-.+-..|..+.+++....--....+ .-..+|..+...+-..|+.++
T Consensus 56 h~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~ 134 (966)
T KOG4626|consen 56 HRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQD 134 (966)
T ss_pred HHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHH
Confidence 33445677777766444432221 12222222233556666666654433222222 234578889999999999999
Q ss_pred HHHHHHHHHHcCCCC-ChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcch-HHHHHHHHHHHhcCCHHHHHHHHhhc
Q 044131 295 SLRLFRQLLASAERV-NSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNS-SVLTALSTVYSRLNEMEAARKLFDES 372 (784)
Q Consensus 295 A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~-~~~~~Li~~y~~~g~~~~A~~~f~~~ 372 (784)
|+.+|+.|.+. +| ....|..+..++...|+.+.+.+.+...++.. |+. .+.+-+.+.....|++++|...+.+.
T Consensus 135 al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 135 ALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 99999999875 45 35678889999999999999999999888754 433 34455666677789999999988775
Q ss_pred CCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchh
Q 044131 373 SEK---SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN-PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIY 448 (784)
Q Consensus 373 ~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 448 (784)
.+. -.+.|+.|...+-..|+...|+..|.+... +.|+ ...|..+-..+...+.++.|...+..+.... +....
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~ 287 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAV 287 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchh
Confidence 543 346899999999999999999999999886 4666 3467777778888888888888777776543 33566
Q ss_pred hHhHHHHHHHhcCCHHHHHHHHhhcCC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 044131 449 VSTALIDMYAKCGNIVEARELFDLMSH--KS-EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSG-VTFLSVLYACS 524 (784)
Q Consensus 449 ~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~ 524 (784)
++..|...|-..|.+|-|+..+++..+ |+ ...||.|..++-..|+..+|...|.+.+. +.|+. ...+.|...+.
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYR 365 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHH
Confidence 777788889999999999999999874 44 56999999999999999999999999988 45654 57889999999
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 044131 525 HAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPGPA-VWGALLGACMIHKDTNLAR 601 (784)
Q Consensus 525 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~ 601 (784)
..|.+++|..+|.... .+.|. ...++.|...|-..|++++|...+++. .++|+.. .++.+...+...|++..|.
T Consensus 366 E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 9999999999999876 56677 778899999999999999999999876 6889755 9999999999999999999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 602 VASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 602 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+.+.+++..+|.-+..+..|+.+|..+|+..+|..-++...+
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 999999999999999999999999999999999998877654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-16 Score=183.18 Aligned_cols=248 Identities=13% Similarity=0.047 Sum_probs=184.2
Q ss_pred CCChhHHHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHH
Q 044131 390 NGLTEEAISLFQEMQASK-VAPN-PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEAR 467 (784)
Q Consensus 390 ~g~~~~A~~l~~~m~~~g-~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 467 (784)
.+++++|++.|++....+ ..|+ ...+..+...+...|++++|...++.+++.. +.+...+..+...|...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 356777777777777654 2333 3445555556667778888888887777653 334556677777888888888888
Q ss_pred HHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 044131 468 ELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDH 543 (784)
Q Consensus 468 ~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 543 (784)
..|++.. ..+...|..+...|...|++++|+..|++.++. .| +...+..+..++...|+.++|...|+...+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 8887764 245678888888888889999999999888874 44 4456667777888889999999999888743
Q ss_pred CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 544 GFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPGP-------A-VWGALLGACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 544 ~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-------~-~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
.|+ ...|..+..+|...|++++|.+.+++. .+.|+. . .++..+..+...|++++|...++++++++|+
T Consensus 463 --~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 463 --FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred --CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 354 677888888899999999999888874 344421 1 1222222334469999999999999999999
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 614 NVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 614 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+...+..|+.+|...|++++|.+.++...+
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 988999999999999999999999887654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-17 Score=181.54 Aligned_cols=292 Identities=13% Similarity=0.115 Sum_probs=218.9
Q ss_pred HHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhhhCch
Q 044131 355 VYSRLNEMEAARKLFDESSEK---SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN---PVTVSSILSACAQLGAI 428 (784)
Q Consensus 355 ~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~~~~ 428 (784)
.+...|++++|...|+++.+. +..+|..+...|.+.|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 445667777777777776543 344677777777888888888888887776432222 24556667777777888
Q ss_pred HHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCC--C------HHHHHHHHHHHHHcCCHHHHHHH
Q 044131 429 SLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHK--S------EVTWNTMISGYGLHGHGLEALQL 500 (784)
Q Consensus 429 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~~ 500 (784)
+.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+. + ...|..+...+.+.|+.++|+..
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88888888777653 445667778888888888888888888877531 1 12456677778888999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC--cchHHHHHHHHHhcCCHHHHHHHHHhCC-C
Q 044131 501 FSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL--AEHYACMVDILGRAGQLEKALEFIKGLA-V 577 (784)
Q Consensus 501 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~ 577 (784)
|+++.+.. +.+...+..+...+...|++++|.++|+++.+. .|+ ...+..++.+|.+.|++++|...++++. .
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99988743 233456777778888899999999999988743 344 4567888899999999999999998873 5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh--cCChHHHHHHHHHHHhCCCccCCc
Q 044131 578 EPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSA--ERDYLQAATVRQVVKKRKLAKAPG 651 (784)
Q Consensus 578 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~--~g~~~~a~~~~~~m~~~~~~k~~g 651 (784)
.|+...+..+...+...|+++.|...++++++..|+++....++...+.. .|+.+++..+++.|.++++++.|.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 67777778888899999999999999999999999987555444433322 569999999999999999988886
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-15 Score=170.00 Aligned_cols=351 Identities=12% Similarity=0.021 Sum_probs=272.5
Q ss_pred HhcCChHHHHHHHhcCCC------CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhH
Q 044131 256 SKCGEVERAELLFRDIVR------PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHL 329 (784)
Q Consensus 256 ~~~g~~~~A~~~f~~~~~------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 329 (784)
.|..+++.-.-.|..-++ .+..-.-.++..+.+.|++++|+.+++..+.....+....+ .+..+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~-~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLR-RWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHH-HHhhhHhhcCCHHH
Confidence 345566666666665544 12333455677888999999999999998887544443333 44455566899999
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 044131 330 TNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGLTEEAISLFQEMQAS 406 (784)
Q Consensus 330 a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 406 (784)
|...+..+++.. +.+...+..+...|...|++++|...|++... .+...|..+...+.+.|++++|...++++...
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999999988774 45667788899999999999999999998654 35678999999999999999999999988765
Q ss_pred CCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHH
Q 044131 407 KVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNT 483 (784)
Q Consensus 407 g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~ 483 (784)
. |+.......+..+...|++++|...++.+.+..-.++......+...+.+.|++++|...|++... .+...+..
T Consensus 174 ~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 V--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred C--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3 333222222345778899999999999887764334444555667888999999999999998763 46778888
Q ss_pred HHHHHHHcCCHHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHH
Q 044131 484 MISGYGLHGHGLE----ALQLFSEMLHSGIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVD 557 (784)
Q Consensus 484 li~~~~~~g~~~~----A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~ 557 (784)
+...|.+.|++++ |+..|++..+. .|+ ...+..+...+...|++++|..+++...+ +.|+ ...+..+..
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~ 326 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence 9999999999986 89999999884 454 55788888999999999999999999874 3565 556777889
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 558 ILGRAGQLEKALEFIKGLA-VEPGPAVWG-ALLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m~-~~p~~~~~~-~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
.|.+.|++++|.+.++++. ..|+...+. .+..++...|+.+.|...++++++.+|++.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999998874 567655443 456678899999999999999999999864
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.1e-15 Score=172.23 Aligned_cols=357 Identities=12% Similarity=0.082 Sum_probs=219.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHh
Q 044131 279 CNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSR 358 (784)
Q Consensus 279 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~ 358 (784)
+..+...+...|++++|+++|++.+... +.+......+...+...|+.+.|...+..+++. .+.+.. +..+..++..
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~ 128 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHH
Confidence 4444444444444444444444443321 111222333333444444444444444444443 133333 5556666666
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH------HHHHHHHHH-----hh
Q 044131 359 LNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPV------TVSSILSAC-----AQ 424 (784)
Q Consensus 359 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~------t~~~ll~a~-----~~ 424 (784)
.|+.++|...+++... .+...+..+...+.+.|..++|++.++.... .|+.. .....+... ..
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~ 205 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSE 205 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccCh
Confidence 6666666666665443 2344455556666666666666666654432 22210 011111111 11
Q ss_pred hCch---HHHHHHHHHHHHc-CCCCchh--hHhHH---HHHHHhcCCHHHHHHHHhhcCCCC---HH-HHHHHHHHHHHc
Q 044131 425 LGAI---SLGKWVHELVKSR-NFESNIY--VSTAL---IDMYAKCGNIVEARELFDLMSHKS---EV-TWNTMISGYGLH 491 (784)
Q Consensus 425 ~~~~---~~a~~i~~~~~~~-g~~~~~~--~~~~L---i~~y~k~g~~~~A~~~f~~~~~~~---~~-~~~~li~~~~~~ 491 (784)
.+.+ +.|.+.++.+.+. .-.|+.. ...+. +.++...|++++|+..|+.+.+.+ .. .-..+...|...
T Consensus 206 ~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~ 285 (765)
T PRK10049 206 KERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKL 285 (765)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence 1222 5566666666643 1122211 11111 223456688999999998887421 11 112246678889
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC----------CCCC---cchHH
Q 044131 492 GHGLEALQLFSEMLHSGIRPS-----GVTFLSVLYACSHAGLVREGDEIFQSMIHDHG----------FKPL---AEHYA 553 (784)
Q Consensus 492 g~~~~A~~~~~~m~~~g~~pd-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~ 553 (784)
|++++|+..|+++.+.. |. ......+..++...|+.++|.++++.+.+... -.|+ ...+.
T Consensus 286 g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 286 HQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred CCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 99999999999887643 32 23456666778889999999999998875311 0122 22445
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 044131 554 CMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDY 631 (784)
Q Consensus 554 ~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 631 (784)
.+..++...|++++|++.++++. ..| +...|..+...+...|+.+.|+..++++++++|+++..++.++.++...|+|
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH
Confidence 67788999999999999999873 344 5668999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 044131 632 LQAATVRQVVKK 643 (784)
Q Consensus 632 ~~a~~~~~~m~~ 643 (784)
++|..+.+.+.+
T Consensus 444 ~~A~~~~~~ll~ 455 (765)
T PRK10049 444 RQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHHH
Confidence 999999988865
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-13 Score=151.46 Aligned_cols=575 Identities=15% Similarity=0.124 Sum_probs=391.8
Q ss_pred hhHHHHHhccCCC--C-CcchHHHHHHHHhcCCCchhHHHHHHHHHhh--CCCCCCcccHHHHHHHHhcCCCchHHHHHH
Q 044131 57 TCYARALFFSIPK--P-DLFLFNVIIRGFSNNEMPKSSICFYTHLRKN--TALTPDNFTYSFVLSAASACCDRSIGVLLH 131 (784)
Q Consensus 57 ~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 131 (784)
+++|.+.|....+ | |+...-.=.......+++..|+. +|..... ...+||...- +-..+.+.++.+.|+..+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~-yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALK-YYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHH-HHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHH
Confidence 4777777776532 3 33222111122235678899999 8887443 4456666432 224446778888888888
Q ss_pred HHHHHhCCCCchhHHHHHHHHh---hcCC---ChHHHHHHhccCC---CCCcccHHHHHHHHHcCCCchHHHHHHHHHHH
Q 044131 132 GHAIVSGYGSDLFVGAALVDLY---FKFS---WVKSARKVFDKMP---EKDTVLWNSMISGLMKNCCFQDSIWVFGDMVR 202 (784)
Q Consensus 132 ~~~~~~g~~~d~~~~~~li~~y---~~~g---~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 202 (784)
.++++.. | ...++++..+ .... .+..+..++...- ..|++.-|.|..-|.-.|++..++.+...+..
T Consensus 223 ~ralqLd--p--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 223 ERALQLD--P--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHhcC--h--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 8887764 3 2223333322 1222 2444444444332 24788889999999999999999999998876
Q ss_pred cCCCC-CChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-eee
Q 044131 203 NGGTW-LDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR--PD-LIS 278 (784)
Q Consensus 203 ~~g~~-pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~d-~~~ 278 (784)
..-.. .-..+|-.+-+++-..|+++.|...+-...+..-..-+..+-.|..+|.+.|+++.|...|+.+.. || ..+
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~et 378 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYET 378 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHH
Confidence 51111 112357788889999999999999998887754333344456788999999999999999998854 33 334
Q ss_pred HHHHHHHHHhCC----CchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHH----HHHHhCCCcchHHHH
Q 044131 279 CNAMISGYTCNG----KTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHS----FCLKSGIVSNSSVLT 350 (784)
Q Consensus 279 ~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~----~~~~~g~~~~~~~~~ 350 (784)
.-.+-..|+..+ ..+.|..++.+..+.- +-|...|..+-..+-.... ......+. .+...+..+.+.+.|
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 444445555554 4466666666555432 3445566655555544332 22244444 344566678889999
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC-------Ch------hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHH-HH
Q 044131 351 ALSTVYSRLNEMEAARKLFDESSEK-------SL------ASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVT-VS 416 (784)
Q Consensus 351 ~Li~~y~~~g~~~~A~~~f~~~~~~-------~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~ 416 (784)
.+...+...|+++.|...|+..... |. .+-..+...+-..++++.|.+.|...... .|+-++ |.
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~yl 534 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYL 534 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHH
Confidence 9999999999999999999865432 22 12233445566678999999999999875 565443 22
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC-----CCCHHHHHHHHHHHH--
Q 044131 417 SILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS-----HKSEVTWNTMISGYG-- 489 (784)
Q Consensus 417 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~-- 489 (784)
.++......+...+|...+..+.... ..++.+.+-+.+.|.+...+.-|.+-|..+. .+|..+.-+|...|.
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 23222223467778888888877654 5567777777888999888888888665554 235555555555443
Q ss_pred ----------HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHH
Q 044131 490 ----------LHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDIL 559 (784)
Q Consensus 490 ----------~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l 559 (784)
..+..++|+++|.+.+... +-|...-+.+.-.+++.|++.+|..+|.+..+.. .-...+|-.+...|
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~ 690 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCY 690 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHH
Confidence 2345778999999988853 4466777788888999999999999999998642 23456788899999
Q ss_pred HhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHH----------
Q 044131 560 GRAGQLEKALEFIKGLA----VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIY---------- 625 (784)
Q Consensus 560 ~r~g~~~eA~~~~~~m~----~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y---------- 625 (784)
...|++-.|+++|+..- -+.++.+...|..++...|.+.+|...+..+..+.|.++..-..++-+.
T Consensus 691 ~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~ 770 (1018)
T KOG2002|consen 691 VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRL 770 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhc
Confidence 99999999999998651 2446778999999999999999999999999999999998777666543
Q ss_pred ---------HhcCChHHHHHHHHHHHhCCC
Q 044131 626 ---------SAERDYLQAATVRQVVKKRKL 646 (784)
Q Consensus 626 ---------~~~g~~~~a~~~~~~m~~~~~ 646 (784)
...+..++|.++|..|...+-
T Consensus 771 ~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 771 EKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344556778888888876543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-14 Score=168.53 Aligned_cols=394 Identities=12% Similarity=0.056 Sum_probs=262.5
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044131 181 ISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGE 260 (784)
Q Consensus 181 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 260 (784)
+......|+.++|++++.+.... -..+...+..+..++...|++++|.+++..+++.. +.+......+..++...|+
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 44455677777777777776531 12233345666666666666666666666666542 2234445556666666666
Q ss_pred hHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHH
Q 044131 261 VERAELLFRDIVR---PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFC 337 (784)
Q Consensus 261 ~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~ 337 (784)
.++|...+++... .+.. |..+...+...|+.++|+..+++..+.
T Consensus 99 ~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~-------------------------------- 145 (765)
T PRK10049 99 YDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR-------------------------------- 145 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------------
Confidence 6666666665532 2223 555555566666666666666666543
Q ss_pred HHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh--------HHHHHHHHHH-----hCCCh---hHHHHHHH
Q 044131 338 LKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLA--------SWNAMIAGYT-----QNGLT---EEAISLFQ 401 (784)
Q Consensus 338 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~l~~ 401 (784)
. +.+..+...+...+...|..+.|.+.++.... ++. ....++..+. ..+++ ++|++.++
T Consensus 146 ---~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 146 ---A-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred ---C-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 2 23444555566677777888888888877665 211 1122222221 22233 77888888
Q ss_pred HHHhC-CCCCCHH-HHH----HHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC
Q 044131 402 EMQAS-KVAPNPV-TVS----SILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH 475 (784)
Q Consensus 402 ~m~~~-g~~pd~~-t~~----~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~ 475 (784)
.+... ...|+.. .+. ..+.++...++.++|+..++.+.+.+-+........+...|...|++++|+..|+++..
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 88754 2233321 111 11345567789999999999998875221112223357789999999999999998753
Q ss_pred CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHccCCHHHHHH
Q 044131 476 KS-------EVTWNTMISGYGLHGHGLEALQLFSEMLHSG-----------IRPSG---VTFLSVLYACSHAGLVREGDE 534 (784)
Q Consensus 476 ~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~pd~---~t~~~ll~a~~~~g~~~~a~~ 534 (784)
.+ ...+..+..++.+.|++++|+++++++.+.. -.||. ..+..+...+...|+.++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 22 3456667778899999999999999998752 12342 234566678889999999999
Q ss_pred HHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 044131 535 IFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELD 611 (784)
Q Consensus 535 ~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~ 611 (784)
.++++... .|+ ...+..+..++...|++++|++.+++. ...|+ ...+..+.......|++++|+..++++++..
T Consensus 381 ~l~~al~~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 381 RARELAYN---APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999754 454 778889999999999999999999987 46676 5577788888889999999999999999999
Q ss_pred CCCcchH
Q 044131 612 PENVGYH 618 (784)
Q Consensus 612 p~~~~~~ 618 (784)
|+++.+.
T Consensus 458 Pd~~~~~ 464 (765)
T PRK10049 458 PQDPGVQ 464 (765)
T ss_pred CCCHHHH
Confidence 9998554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-14 Score=164.30 Aligned_cols=270 Identities=11% Similarity=0.018 Sum_probs=208.4
Q ss_pred cCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhhCchHHH
Q 044131 359 LNEMEAARKLFDESSEK------SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN-PVTVSSILSACAQLGAISLG 431 (784)
Q Consensus 359 ~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a 431 (784)
.+++++|.+.|+...+. +...|+.+...+...|++++|+..|++.... .|+ ...+..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 46788888888876532 3457888888888999999999999998764 454 45777777888889999999
Q ss_pred HHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044131 432 KWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSG 508 (784)
Q Consensus 432 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 508 (784)
...+..+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 99999888764 55678888899999999999999999998763 35678888889999999999999999999874
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCc-ch-------HHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 044131 509 IRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLA-EH-------YACMVDILGRAGQLEKALEFIKGL-AVEP 579 (784)
Q Consensus 509 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~-------~~~lv~~l~r~g~~~eA~~~~~~m-~~~p 579 (784)
.+.+...+..+..++...|++++|.+.|+...+ +.|+. .. ++.....+...|++++|.+++++. ...|
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP 539 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 233467788888899999999999999998873 34431 11 122223344579999999999885 4566
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 580 GP-AVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 580 ~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+. ..+..+...+...|++++|...+++++++.+.....+ .+..|.++.++....++
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 54 4788999999999999999999999999887644322 23346667776655554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-14 Score=166.12 Aligned_cols=325 Identities=12% Similarity=0.007 Sum_probs=265.1
Q ss_pred hhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHH
Q 044131 311 SSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGY 387 (784)
Q Consensus 311 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 387 (784)
..-...++..+...|+.+.|..++...+.....+ ......++......|++++|...|+++.. .+...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445567778889999999999999998876444 44445555666779999999999998764 3566888899999
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHH
Q 044131 388 TQNGLTEEAISLFQEMQASKVAPN-PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEA 466 (784)
Q Consensus 388 ~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A 466 (784)
.+.|++++|+..|++.... .|+ ...+..+...+...|+.++|...+..+....- .+...+..+. .+.+.|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~~-~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATCL-SFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHHH-HHHHcCCHHHH
Confidence 9999999999999999874 454 56777788889999999999999998876642 2333443333 47889999999
Q ss_pred HHHHhhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHH
Q 044131 467 RELFDLMSHK----SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVRE----GDEIFQS 538 (784)
Q Consensus 467 ~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~----a~~~~~~ 538 (784)
...++.+.+. +...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+.++ |...|+.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9999987542 33445556778899999999999999999853 3345677788889999999986 8999998
Q ss_pred hHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 539 MIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 539 m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
..+ +.|+ ...+..+..+|.+.|++++|...+++. ...|+ ..++..+..++...|++++|...++++++.+|+++
T Consensus 276 Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 276 ALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred HHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 874 4566 678889999999999999999999886 35564 55788888999999999999999999999999988
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 616 GYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 616 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
..+..++.+|...|++++|.+.++...+.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 87888899999999999999999877554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-13 Score=157.00 Aligned_cols=437 Identities=8% Similarity=0.024 Sum_probs=263.5
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCcccHHHHH---HHHHcCCCchHHHH
Q 044131 119 SACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMI---SGLMKNCCFQDSIW 195 (784)
Q Consensus 119 ~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~ 195 (784)
.+.|+...|...+.++++........++ .++..+...|+.++|+..+++...|+...+..+. ..|...|++++|++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3666667777777776665422222333 6666777777777777777777665443333332 35556677777777
Q ss_pred HHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 044131 196 VFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPD 275 (784)
Q Consensus 196 l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d 275 (784)
+|+++.+. .| .++.++..++..|...++.++|.+.++++...+
T Consensus 124 ly~kaL~~---dP----------------------------------~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d 166 (822)
T PRK14574 124 LWQSSLKK---DP----------------------------------TNPDLISGMIMTQADAGRGGVVLKQATELAERD 166 (822)
T ss_pred HHHHHHhh---CC----------------------------------CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence 77777654 22 234555566777888888888888888886644
Q ss_pred eeeHHHHHHHHHh--CCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHH
Q 044131 276 LISCNAMISGYTC--NGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALS 353 (784)
Q Consensus 276 ~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li 353 (784)
......+..+|.. .++..+|++.++++.+.. +-+...+.....+..+.|-...|.++...- |+.+.-.-..
T Consensus 167 p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~ 239 (822)
T PRK14574 167 PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYR 239 (822)
T ss_pred cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHH
Confidence 4433334444444 455556888888888763 222333344444444444444444333221 1111000000
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCC---hhHHHHHHHHHHhC-CCCCCH-H----HHHHHHHHHhh
Q 044131 354 TVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGL---TEEAISLFQEMQAS-KVAPNP-V----TVSSILSACAQ 424 (784)
Q Consensus 354 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~-g~~pd~-~----t~~~ll~a~~~ 424 (784)
.. +.+.|.+..+.-..+ .-...++ .+.|+.-++.+... +-.|.. . ...--+-++..
T Consensus 240 ~l-----~~~~~a~~vr~a~~~----------~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~ 304 (822)
T PRK14574 240 QL-----ERDAAAEQVRMAVLP----------TRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV 304 (822)
T ss_pred HH-----HHHHHHHHHhhcccc----------cccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH
Confidence 00 001111111000000 0000111 24455555555431 112321 1 11233456677
Q ss_pred hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCC---------CHHHHHHHHHHHHHcCCHH
Q 044131 425 LGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHK---------SEVTWNTMISGYGLHGHGL 495 (784)
Q Consensus 425 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~~g~~~ 495 (784)
.++...+...++.+...+.+....+--++.++|...+++++|..+|..+... +......|.-+|...++++
T Consensus 305 r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~ 384 (822)
T PRK14574 305 RHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLD 384 (822)
T ss_pred hhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHH
Confidence 7888888888888887776666677788888888888888888888876421 2333567788888888888
Q ss_pred HHHHHHHHHHHCC-------------CCCCHHH-HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHH
Q 044131 496 EALQLFSEMLHSG-------------IRPSGVT-FLSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILG 560 (784)
Q Consensus 496 ~A~~~~~~m~~~g-------------~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~ 560 (784)
+|..+++++.+.- ..||-.. +..+...+...|++.+|++.++.+... .| |......+.+++.
T Consensus 385 ~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~---aP~n~~l~~~~A~v~~ 461 (822)
T PRK14574 385 KAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST---APANQNLRIALASIYL 461 (822)
T ss_pred HHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH
Confidence 8888888888731 1122233 334455677888888888888888643 44 4777888888888
Q ss_pred hcCCHHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchH
Q 044131 561 RAGQLEKALEFIKGLA-VEPGP-AVWGALLGACMIHKDTNLARVASEKLFELDPENVGYH 618 (784)
Q Consensus 561 r~g~~~eA~~~~~~m~-~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 618 (784)
..|+..+|++.++... ..|+. .+...+..+....+++++|+.+.+.+.+..|++++.-
T Consensus 462 ~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 462 ARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 8888888888887653 56654 3666677777778888888888888888888887543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-13 Score=147.53 Aligned_cols=542 Identities=11% Similarity=0.080 Sum_probs=387.2
Q ss_pred chhHHHHHHHHHhhCCCCCCcccHHHHHHHHh--cCCCchHHHHHHHHHHHhC--CCCchhHHHHHHHHhhcCCChHHHH
Q 044131 88 PKSSICFYTHLRKNTALTPDNFTYSFVLSAAS--ACCDRSIGVLLHGHAIVSG--YGSDLFVGAALVDLYFKFSWVKSAR 163 (784)
Q Consensus 88 ~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g--~~~d~~~~~~li~~y~~~g~~~~A~ 163 (784)
.+.|.. .|....+. .|+.. ...+.+||. ..+++..+..+|..++... ..||+.+... ..+.++|+.+.|+
T Consensus 146 ~~~A~a-~F~~Vl~~--sp~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADA-QFHFVLKQ--SPDNI-LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHH-HHHHHHhh--CCcch-HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHhccchhhHH
Confidence 478888 77776653 24332 334557776 5669999999999977654 4667655433 4567999999999
Q ss_pred HHhccCCCCCcccHHHHHHHH-H-----cCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHH
Q 044131 164 KVFDKMPEKDTVLWNSMISGL-M-----KNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGL 237 (784)
Q Consensus 164 ~~f~~~~~~~~~~~~~li~~~-~-----~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 237 (784)
..|.+..+-|+..-++++.-. . ....+..++.++...-.. -.-|++..+.|-+-+...++.+.+..+...++
T Consensus 220 ~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 220 LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 999999877665555555422 1 223455677777666543 23456677788888889999999999999888
Q ss_pred HhCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC--eeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCh
Q 044131 238 KLGFHDH--VYVLTGLVSFYSKCGEVERAELLFRDIVR--PD--LISCNAMISGYTCNGKTESSLRLFRQLLASAERVNS 311 (784)
Q Consensus 238 ~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~d--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 311 (784)
+...... ...|--+..+|-..|+++.|...|.+... +| +..+--+...|...|+.+.+...|+..... .+-+.
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~ 376 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNY 376 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchH
Confidence 7653222 23466688999999999999999977644 33 344556788999999999999999999875 33445
Q ss_pred hhHHhHHHhhcCCC----ChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCC------HHHHHHHHhh-cCCCChhHH
Q 044131 312 STIVGLIPVFYPFG----HLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNE------MEAARKLFDE-SSEKSLASW 380 (784)
Q Consensus 312 ~t~~~ll~~~~~~~----~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~------~~~A~~~f~~-~~~~~~~~~ 380 (784)
.|...+-..|+..+ ..+.|..+.+...+.- +.|...|-.+..+|....- +..|..++.. +....+...
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 56666666666554 4566666666666554 5577777777777765433 3334433333 233466788
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhC---CCCCCH-----H-HHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHh
Q 044131 381 NAMIAGYTQNGLTEEAISLFQEMQAS---KVAPNP-----V-TVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVST 451 (784)
Q Consensus 381 ~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~-----~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 451 (784)
|.+.+.+...|.+++|...|.+.... ...+|. . +--.+-...-..++.+.|.+.+..+.+.. +.-+..|-
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~yl 534 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYL 534 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHH
Confidence 99999999999999999999998764 223333 2 22234444556779999999999998763 22222233
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHc--
Q 044131 452 ALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHS-GIRPSGVTFLSVLYACSH-- 525 (784)
Q Consensus 452 ~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~t~~~ll~a~~~-- 525 (784)
-|.-|--..+...+|...+.... +.|+..|+-+...|.....+..|.+-|+...+. -..+|..+..+|.+.|..
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 33323333367778888888776 467788888888899998999999888777653 234788888888776653
Q ss_pred ----------cCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 044131 526 ----------AGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACM 592 (784)
Q Consensus 526 ----------~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~ 592 (784)
.+..++|+++|.+.++ ..| +...-+-+.-.|+..|++.+|.++|.+.. ...+..+|-.|...|.
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH
Confidence 3456778888887774 334 46667778889999999999999998873 2335568999999999
Q ss_pred hcCCHHHHHHHHHHHhcC--CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 593 IHKDTNLARVASEKLFEL--DPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 593 ~~g~~~~a~~~~~~~~~l--~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
..|++..|.+.|+..++. ..+++.....|+.++...|+|.+|.+.......
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999999999873 346677888999999999999999998766544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-13 Score=157.03 Aligned_cols=431 Identities=12% Similarity=0.022 Sum_probs=255.9
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCCChh-hHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 044131 184 LMKNCCFQDSIWVFGDMVRNGGTWLDST-SVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVE 262 (784)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 262 (784)
..+.|+++.|++.|++..+. .|+.. ....++..+...|+.++|...++..+. .-........++...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA---GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh---CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHH
Confidence 56788888888888887743 44431 122555555555666666666655551 00111222222344555556666
Q ss_pred HHHHHHhcCCCC---CeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHH
Q 044131 263 RAELLFRDIVRP---DLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLK 339 (784)
Q Consensus 263 ~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 339 (784)
+|.++|+++.+. |...+..++..|.+.++.++|++.++++... .|+...+..++..+...++...+.+.++.+++
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 666666655331 2233444455555566666666666655443 23333332222222222333234444444444
Q ss_pred hCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 044131 340 SGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEK-SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSI 418 (784)
Q Consensus 340 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 418 (784)
.. +.+...+..++....+.|-...|.++..+-+.- +...+.-+ +.+.|.+ +.+.+..|+.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~----~vr~a~~~~~------ 258 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAE----QVRMAVLPTR------ 258 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHH----HHhhcccccc------
Confidence 42 333344444444444444444444443332211 00000000 0001111 1111111100
Q ss_pred HHHHhhhC---chHHHHHHHHHHHHc-C-CCCchh-hHhHHHH---HHHhcCCHHHHHHHHhhcCCCC----HHHHHHHH
Q 044131 419 LSACAQLG---AISLGKWVHELVKSR-N-FESNIY-VSTALID---MYAKCGNIVEARELFDLMSHKS----EVTWNTMI 485 (784)
Q Consensus 419 l~a~~~~~---~~~~a~~i~~~~~~~-g-~~~~~~-~~~~Li~---~y~k~g~~~~A~~~f~~~~~~~----~~~~~~li 485 (784)
.... -.+.+..-++.+... + .++... ...+.+| ++.+.|++.++++.|+.+.... ..+--++.
T Consensus 259 ----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 259 ----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred ----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 0011 233344444444431 1 122212 2334444 5678899999999999998422 23556788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC----------CCCC--
Q 044131 486 SGYGLHGHGLEALQLFSEMLHSG-----IRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHG----------FKPL-- 548 (784)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g-----~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~-- 548 (784)
.+|...+++++|+.+|++..... ..++......|..|+..++++++|..+++.+.+.-. -.|+
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 99999999999999999997643 122334467899999999999999999999975211 0122
Q ss_pred -cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 044131 549 -AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIY 625 (784)
Q Consensus 549 -~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 625 (784)
.+.+..++..+...|++.+|++.++++. ..| |..++..+...++..|+...|+..++.+..++|++......++..+
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 3445567888999999999999999983 444 7779999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHh
Q 044131 626 SAERDYLQAATVRQVVKK 643 (784)
Q Consensus 626 ~~~g~~~~a~~~~~~m~~ 643 (784)
...|+|++|.++.+...+
T Consensus 495 l~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 495 MALQEWHQMELLTDDVIS 512 (822)
T ss_pred HhhhhHHHHHHHHHHHHh
Confidence 999999999998877655
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-12 Score=131.31 Aligned_cols=326 Identities=12% Similarity=0.096 Sum_probs=207.0
Q ss_pred cchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHh--cCCCchHH-HHHHHHHHHhCCCCchhHHHH
Q 044131 72 LFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAAS--ACCDRSIG-VLLHGHAIVSGYGSDLFVGAA 148 (784)
Q Consensus 72 ~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~d~~~~~~ 148 (784)
+++=|.|+. ...+|...++.- +++.|+..|++.+...=..++.... ...++.-+ .+.|-.|.+.|-.. ..+
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~i-lY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~s--- 189 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCI-LYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSS--- 189 (625)
T ss_pred hcchhHHHH-HHhhcccchhHH-HHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-ccc---
Confidence 445555554 345677888887 9999999988777665555554322 22233222 12233333333221 111
Q ss_pred HHHHhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhH
Q 044131 149 LVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRL 228 (784)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~ 228 (784)
-|.|++.+ -+|+..| +...++..||.|.++--..+.|.++|++-... ..+.+..+|+.++.+-+- ..
T Consensus 190 -----WK~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~----~~ 256 (625)
T KOG4422|consen 190 -----WKSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSY----SV 256 (625)
T ss_pred -----cccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHh----hc
Confidence 24565544 4455444 56678999999999999999999999999988 889999999999988653 34
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCC
Q 044131 229 GMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAER 308 (784)
Q Consensus 229 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 308 (784)
++.+...|+...+.||.+++|+++...++.|.++.|++.+ ++++.+|++.|+.
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aa---------------------------lqil~EmKeiGVe 309 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAA---------------------------LQILGEMKEIGVE 309 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHH---------------------------HHHHHHHHHhCCC
Confidence 5889999999999999999999999999999999887654 4444455555555
Q ss_pred CChhhHHhHHHhhcCCCChhH-HHHHHHHHHHh--C--C----CcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC----
Q 044131 309 VNSSTIVGLIPVFYPFGHLHL-TNCIHSFCLKS--G--I----VSNSSVLTALSTVYSRLNEMEAARKLFDESSEK---- 375 (784)
Q Consensus 309 p~~~t~~~ll~~~~~~~~~~~-a~~i~~~~~~~--g--~----~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---- 375 (784)
|...+|.-+|..+.+.++... +..+...+... | + +.|...+..-++.+.+..+.+-|.++-.-....
T Consensus 310 PsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~ 389 (625)
T KOG4422|consen 310 PSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWK 389 (625)
T ss_pred cchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh
Confidence 555555555554444444322 22222222211 1 1 112233333344444444444444443322211
Q ss_pred -------ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCC
Q 044131 376 -------SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNF 443 (784)
Q Consensus 376 -------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 443 (784)
...-|..+....++....+.-+..|..|.-.-+-|+..+...+++|....+.++....++..++..|.
T Consensus 390 ~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 390 FIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 11234455666677777788888888888777778888888888888888888888888777776653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.3e-11 Score=129.65 Aligned_cols=583 Identities=13% Similarity=0.035 Sum_probs=330.9
Q ss_pred HhhCCCChhHHHHHhccCC---CCCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchH
Q 044131 50 RLSDFKATCYARALFFSIP---KPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSI 126 (784)
Q Consensus 50 ~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 126 (784)
.|++ |++++|.+++.++- ..+...|.+|-..|-+.|+.++++. .+- ....-.+-|...|..+-.-..+.|.+..
T Consensus 149 lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~-~~l-lAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALN-FWL-LAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHH-HHH-HHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 3454 99999999998863 3567789999999999999999987 322 2222233455677777777778889999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCc-ccH-------HHHHHHHHcCCCchHHHHHHH
Q 044131 127 GVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDT-VLW-------NSMISGLMKNCCFQDSIWVFG 198 (784)
Q Consensus 127 a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~-------~~li~~~~~~g~~~~A~~l~~ 198 (784)
|.-.+.++++.. +++....---+.+|-+.|+...|..-|.++-+.+. +.| -.++..|...+..+.|++.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999886 44444444556788899999988887777654322 111 123445556666677777777
Q ss_pred HHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHh---------------------------CCCCchhH-HHH
Q 044131 199 DMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKL---------------------------GFHDHVYV-LTG 250 (784)
Q Consensus 199 ~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---------------------------g~~~~~~~-~~~ 250 (784)
.....++-..+..+++.+...+.+....+.+.......... ++.++..+ ...
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 66553233344445555555555555555544433333221 11222222 111
Q ss_pred HHHHHHhcCChHHHHHHHhcC----CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCC
Q 044131 251 LVSFYSKCGEVERAELLFRDI----VRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGH 326 (784)
Q Consensus 251 li~~y~~~g~~~~A~~~f~~~----~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 326 (784)
+--.-.+.+...++..-|-.. +.-++..|.-+..+|.+.|++.+|+.+|..+.....--+...|-.+...+-..+.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 111112233333443333211 2234445667777788888888888888877766555556677777777777788
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh-----HH-------HHHHHHHHhCCChh
Q 044131 327 LHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLA-----SW-------NAMIAGYTQNGLTE 394 (784)
Q Consensus 327 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~-----~~-------~~li~~~~~~g~~~ 394 (784)
.+.|.+.+..++... +.+..+--.|...|.+.|+.|+|.+.+..+..+|.. .| -.....|.+.|+.+
T Consensus 465 ~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 888888887777654 445566667777788888888888888876655421 11 12234456666666
Q ss_pred HHHHHHHHHHhCC----------------------CCCCHHHHHHHHHHHhhhCchH---HHHHH---HHHHHHcCCCCc
Q 044131 395 EAISLFQEMQASK----------------------VAPNPVTVSSILSACAQLGAIS---LGKWV---HELVKSRNFESN 446 (784)
Q Consensus 395 ~A~~l~~~m~~~g----------------------~~pd~~t~~~ll~a~~~~~~~~---~a~~i---~~~~~~~g~~~~ 446 (784)
+=+..-.+|.... .+-...+...+..+-.+.++.. .+..- .......++..+
T Consensus 544 ~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsid 623 (895)
T KOG2076|consen 544 EFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSID 623 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHH
Confidence 5444444443211 1111112222222222222211 11111 111112222222
Q ss_pred h--hhHhHHHHHHHhcCCHHHHHHHHhhcCCC-----CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C--CCCC
Q 044131 447 I--YVSTALIDMYAKCGNIVEARELFDLMSHK-----SE----VTWNTMISGYGLHGHGLEALQLFSEMLHS-G--IRPS 512 (784)
Q Consensus 447 ~--~~~~~Li~~y~k~g~~~~A~~~f~~~~~~-----~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--~~pd 512 (784)
. ..+.-++...+|.|+.++|..+...+..- +. ..-..++.+....+++.+|.+.++.|... + ..|.
T Consensus 624 dwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~ 703 (895)
T KOG2076|consen 624 DWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY 703 (895)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH
Confidence 1 34455666777777777777766655421 11 12234455556667777777777766653 1 1222
Q ss_pred HHH-HHHHHHHHH-----------------------------------ccCCHHHHHHHHHHhHHhcCCCCCcchHH-HH
Q 044131 513 GVT-FLSVLYACS-----------------------------------HAGLVREGDEIFQSMIHDHGFKPLAEHYA-CM 555 (784)
Q Consensus 513 ~~t-~~~ll~a~~-----------------------------------~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~l 555 (784)
..+ |+..++..+ ..+.+.-|+.++-... ...|+.-.++ ||
T Consensus 704 q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~---~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 704 QLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAF---RQNPDSPLINLCL 780 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHH---HhCCCCcHHHHHH
Confidence 211 221222222 1455566666555443 3345533332 22
Q ss_pred HHHHH----------hcCCHHHHHHHHHhCC-C-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc------
Q 044131 556 VDILG----------RAGQLEKALEFIKGLA-V-EP--GPAVWGALLGACMIHKDTNLARVASEKLFELDPENV------ 615 (784)
Q Consensus 556 v~~l~----------r~g~~~eA~~~~~~m~-~-~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~------ 615 (784)
.-++. |.-.+-.+..++++.. . .+ ...++-.+..||..-|=+..|+..|++++++.|.+.
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d 860 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKED 860 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCC
Confidence 22221 2222334455554331 1 22 345777888999999999999999999999876432
Q ss_pred ------chHHHHHHHHHhcCChHHHHHHHHH
Q 044131 616 ------GYHVLLSNIYSAERDYLQAATVRQV 640 (784)
Q Consensus 616 ------~~~~~l~~~y~~~g~~~~a~~~~~~ 640 (784)
.+-.+|.-||...|+.+-|.++.+.
T Consensus 861 ~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 861 NYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred cccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 2344677899999999998887653
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-12 Score=129.87 Aligned_cols=254 Identities=15% Similarity=0.110 Sum_probs=166.2
Q ss_pred CcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHH
Q 044131 71 DLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALV 150 (784)
Q Consensus 71 ~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li 150 (784)
...++..||+|+++--..+.|.+ ++++-.....+.+..+||.+|.+.+ +..++.+...|+...+.||.+++|+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~-L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARE-LYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHH-HHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHH
Confidence 34578888898888888888888 8888887778888888888887654 344578888888888889999999998
Q ss_pred HHhhcCCChHHHHHHh----ccCC----CCCcccHHHHHHHHHcCCCchH-HHHHHHHHHHc-C--CCCC----ChhhHH
Q 044131 151 DLYFKFSWVKSARKVF----DKMP----EKDTVLWNSMISGLMKNCCFQD-SIWVFGDMVRN-G--GTWL----DSTSVA 214 (784)
Q Consensus 151 ~~y~~~g~~~~A~~~f----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~-~--g~~p----d~~t~~ 214 (784)
...++.|.++.|++.+ .+|. +|...+|..+|.-+.+.+++.+ |..+..++... . .++| |..-|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 8888888887776654 3333 4677777777777777777644 33333333221 0 1222 334566
Q ss_pred hHHHHHhcccchhHHHHHHHHHHHhC----CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCC
Q 044131 215 AVLPAVAEVQELRLGMEIQCLGLKLG----FHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNG 290 (784)
Q Consensus 215 ~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g 290 (784)
+.+..|.+..+.+.|.++++...... +.|+. ....-|..+....++..
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~----------------------------~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ----------------------------HRNFYYRKFFDLICQME 412 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH----------------------------HHHHHHHHHHHHHHHHH
Confidence 77777777777777777776653311 11110 01112334455556666
Q ss_pred CchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 044131 291 KTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYS 357 (784)
Q Consensus 291 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 357 (784)
..+.-+.+|+.|.-.-+-|+..+...++++....+.++....++..++..|...+..+..-++...+
T Consensus 413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 6666667777776666667777777777777777777777777777766665444444443333333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-10 Score=125.59 Aligned_cols=341 Identities=14% Similarity=0.141 Sum_probs=179.0
Q ss_pred CCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccC---CCCCcccHHHHHHHHHcCCCchHHHHHHH
Q 044131 122 CDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKM---PEKDTVLWNSMISGLMKNCCFQDSIWVFG 198 (784)
Q Consensus 122 ~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 198 (784)
|+++.|..++..+++.. +.....|-.|-..|-..|+.+++...+-.. ...|..-|-.+-.-..+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 66666666666666654 334445556666666666666665544322 22344556666666666666666666666
Q ss_pred HHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHH----HHHHHHhcCChHHHHHHHhcCCC-
Q 044131 199 DMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTG----LVSFYSKCGEVERAELLFRDIVR- 273 (784)
Q Consensus 199 ~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~f~~~~~- 273 (784)
+..+. -+++...+--=...|-+.|+...|..-+.++.....+.|..-.-. .+..|...++-+.|.+.++..+.
T Consensus 232 rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 232 RAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 65542 222222222333445555666666666666555433222222222 23344455555666666655533
Q ss_pred ----CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhH----------------------H----hHHHhhcC
Q 044131 274 ----PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTI----------------------V----GLIPVFYP 323 (784)
Q Consensus 274 ----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~----------------------~----~ll~~~~~ 323 (784)
-+...+|.++..|.+...++.|+.....+......+|..-+ . -+.-+...
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 23334666677777777777777766666552222221111 1 11112233
Q ss_pred CCChhHHHHHHHHHHHhC--CCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHhCCChhHHH
Q 044131 324 FGHLHLTNCIHSFCLKSG--IVSNSSVLTALSTVYSRLNEMEAARKLFDESSEK----SLASWNAMIAGYTQNGLTEEAI 397 (784)
Q Consensus 324 ~~~~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~ 397 (784)
....+....+.....+.. ...+...+.-+.++|...|.+.+|.++|..+... +...|--+..+|...|.+++|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 444444455555555554 2334455666666666666666666666665432 4456666666666666666666
Q ss_pred HHHHHHHhCCCCCCH-HHHHHHHHHHhhhCchHHHHHHHHHHH--------HcCCCCchhhHhHHHHHHHhcCCHHHHH
Q 044131 398 SLFQEMQASKVAPNP-VTVSSILSACAQLGAISLGKWVHELVK--------SRNFESNIYVSTALIDMYAKCGNIVEAR 467 (784)
Q Consensus 398 ~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 467 (784)
+.|...+.. .|+. -.-.++-..+-++|+.++|.+.+..+. ..+..|+..+.--..++|.+.|+.++=.
T Consensus 470 e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 470 EFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 666666543 3332 222333344556666666666666532 2234445555555556666666665533
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-10 Score=120.22 Aligned_cols=458 Identities=13% Similarity=0.051 Sum_probs=306.6
Q ss_pred cCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHH----HhCCCCchhHHHHHHHHHHhcCCh
Q 044131 186 KNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGL----KLGFHDHVYVLTGLVSFYSKCGEV 261 (784)
Q Consensus 186 ~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~y~~~g~~ 261 (784)
+..-++.|..++...++ .++-|...|.+..+.=-..|+.+....+....+ ..|+..+..-|-.=...+-+.|..
T Consensus 418 rLetYenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 418 RLETYENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 33344444444444443 244444444444444444444444444433322 234444444443333444444444
Q ss_pred HHHHHHHhcCCC------CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHH
Q 044131 262 ERAELLFRDIVR------PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHS 335 (784)
Q Consensus 262 ~~A~~~f~~~~~------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~ 335 (784)
-.+..+...... .--.+|+.-...|.+.+.++-|..+|...++. .+-+...|..+...--..|..+.-..++.
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 444333333211 11234555555555555555555555544432 12222333333333333344444444444
Q ss_pred HHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 044131 336 FCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNP 412 (784)
Q Consensus 336 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 412 (784)
.++..- +.....|-....-+-..|++..|+.+++..-+ .+...|-+-+..-..+.++++|..+|.+... ..|+.
T Consensus 575 kav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTe 651 (913)
T KOG0495|consen 575 KAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTE 651 (913)
T ss_pred HHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcc
Confidence 444432 33445555566666777888888888776543 3556788888888889999999999988876 45666
Q ss_pred HHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHH
Q 044131 413 VTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH--K-SEVTWNTMISGYG 489 (784)
Q Consensus 413 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~ 489 (784)
..|.--...---++..++|+++++..++. ++.-...|-.+...|-..++++.|+..|..-.+ | .+..|-.+...--
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 66666666666678899999999888876 355567788888999999999999999887653 4 4558888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 044131 490 LHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKAL 569 (784)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~ 569 (784)
+.|+.-.|..+|++....+ +-|...|...+..=.+.|+.++|..+..+.+++ .+.+-..|.--|.+..+.++-..+.
T Consensus 731 k~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHH
Confidence 8899999999999988764 456778889999999999999999999888864 3445778888899999999888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 044131 570 EFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKA 649 (784)
Q Consensus 570 ~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~ 649 (784)
+.+++- +-|+.+.-+....+.....++.|...++++++.+|++..++..+-..+...|.-++-.+++++-.... +.
T Consensus 808 DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~ 883 (913)
T KOG0495|consen 808 DALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PT 883 (913)
T ss_pred HHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CC
Confidence 887775 45666677777788888999999999999999999999999999999999999999999998776533 33
Q ss_pred CcccEEEE
Q 044131 650 PGCTLIEV 657 (784)
Q Consensus 650 ~g~s~i~~ 657 (784)
-|..|+.+
T Consensus 884 hG~~W~av 891 (913)
T KOG0495|consen 884 HGELWQAV 891 (913)
T ss_pred CCcHHHHH
Confidence 57777644
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-11 Score=131.94 Aligned_cols=587 Identities=12% Similarity=0.041 Sum_probs=300.0
Q ss_pred HHHHHHHHhCCCCChhhHhHHHHHhhCCCChhHHHHHhccCCCC----CcchHHHHHHHHhcCCCchhHHHHHHHHHhhC
Q 044131 27 QTHAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSIPKP----DLFLFNVIIRGFSNNEMPKSSICFYTHLRKNT 102 (784)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~ 102 (784)
.+++.+...|..|+..+|.+||..|+..|+.+.|- +|..|.-+ +...+++++.+..+.++.+.+-+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpke--------- 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKE--------- 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCC---------
Confidence 35667778899999999999999999999999998 88877543 33457778877777777766654
Q ss_pred CCCCCcccHHHHHHHHhcCCCchHH---HHHHHHHH----HhCC-----------------CCchhHHHHHHHHhhcCCC
Q 044131 103 ALTPDNFTYSFVLSAASACCDRSIG---VLLHGHAI----VSGY-----------------GSDLFVGAALVDLYFKFSW 158 (784)
Q Consensus 103 ~~~p~~~t~~~ll~~~~~~~~~~~a---~~~~~~~~----~~g~-----------------~~d~~~~~~li~~y~~~g~ 158 (784)
|-+.||..++.+|...||+..- ++.+..+. ..|+ -||.. .++....-.|-
T Consensus 81 ---p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~egl 154 (1088)
T KOG4318|consen 81 ---PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGL 154 (1088)
T ss_pred ---CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHH
Confidence 7778888888888888876542 22111111 1121 11111 12222222344
Q ss_pred hHHHHHHhccCCC----------------------------------CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcC
Q 044131 159 VKSARKVFDKMPE----------------------------------KDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNG 204 (784)
Q Consensus 159 ~~~A~~~f~~~~~----------------------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 204 (784)
++.+.++...+|. ++..++.+++.+-.-+|+.+.|..++.+|.+.
T Consensus 155 waqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~- 233 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK- 233 (1088)
T ss_pred HHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc-
Confidence 4444444444431 34445555555555566666666666666665
Q ss_pred CCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHH
Q 044131 205 GTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMIS 284 (784)
Q Consensus 205 g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~ 284 (784)
|++.+..-|-.+|-+ .++......+...|.+.|+.|+..|+...+--..+.|....+... . +...-+++-..
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~----s-q~~hg~tAavr 305 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG----S-QLAHGFTAAVR 305 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc----c-chhhhhhHHHH
Confidence 555555544444433 455555555555555566666655555444444333332111111 0 00001111111
Q ss_pred HHHhCC----------CchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCC---CcchHHHHH
Q 044131 285 GYTCNG----------KTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGI---VSNSSVLTA 351 (784)
Q Consensus 285 ~~~~~g----------~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~---~~~~~~~~~ 351 (784)
.-+-.| ...-.+..+++..-.|+......|...... ...|.-+...++-+.+..--. ..++..+.+
T Consensus 306 saa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~ 384 (1088)
T KOG4318|consen 306 SAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGA 384 (1088)
T ss_pred HHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHH
Confidence 111111 001111111222222322222222222111 113333344444433322111 112222333
Q ss_pred HHHHHHhcC----------------------CHHHHHHHHhhcCC----------------CChhHH-----------HH
Q 044131 352 LSTVYSRLN----------------------EMEAARKLFDESSE----------------KSLASW-----------NA 382 (784)
Q Consensus 352 Li~~y~~~g----------------------~~~~A~~~f~~~~~----------------~~~~~~-----------~~ 382 (784)
++.-|.+.- +.....++...... +....| +.
T Consensus 385 ~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~q 464 (1088)
T KOG4318|consen 385 LLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQ 464 (1088)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHH
Confidence 333332211 11111111111100 011111 22
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHc--CCCCchhhHhHHHHHHHhc
Q 044131 383 MIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSR--NFESNIYVSTALIDMYAKC 460 (784)
Q Consensus 383 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~Li~~y~k~ 460 (784)
++..++..-+..+++..-...... .-| ..|..++.-|.....++.|..+.++.... .+..|..-++.+.+...+.
T Consensus 465 l~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~ 541 (1088)
T KOG4318|consen 465 LHLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRL 541 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHh
Confidence 333333333333333222222111 111 45777888888888888888888877533 3445677788899999999
Q ss_pred CCHHHHHHHHhhcCC-----CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-------------------------
Q 044131 461 GNIVEARELFDLMSH-----KS-EVTWNTMISGYGLHGHGLEALQLFSEMLHSGI------------------------- 509 (784)
Q Consensus 461 g~~~~A~~~f~~~~~-----~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------------------- 509 (784)
+...++..++.++.+ ++ ..+.--|..+-+..|+.+.-.++++-....|+
T Consensus 542 ~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~ 621 (1088)
T KOG4318|consen 542 AILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEP 621 (1088)
T ss_pred HHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchH
Confidence 999999999988874 22 22444455666667776666666665554432
Q ss_pred -----CCCHHHHHHHHHHHH---------------------ccCCHHHHHHHHHHhHHhcCC---------------CC-
Q 044131 510 -----RPSGVTFLSVLYACS---------------------HAGLVREGDEIFQSMIHDHGF---------------KP- 547 (784)
Q Consensus 510 -----~pd~~t~~~ll~a~~---------------------~~g~~~~a~~~~~~m~~~~~~---------------~p- 547 (784)
+|.+.....+.+... +.|.+.++.++.+ ..|+ .|
T Consensus 622 ~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~e----tpG~r~r~~RDr~~de~e~~~l 697 (1088)
T KOG4318|consen 622 EEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITE----TPGVRCRNGRDRDTDEGEIVPL 697 (1088)
T ss_pred HHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccc----cCcccccCCCccccccCccccH
Confidence 222222222222221 1222222222111 0111 01
Q ss_pred --------CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhcCCCCCc-
Q 044131 548 --------LAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHK---DTNLARVASEKLFELDPENV- 615 (784)
Q Consensus 548 --------~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~l~p~~~- 615 (784)
+..+..-++..|.+.|+++.|..++.++++.|+.....-|+...+.+. |+.++...-+++-++.|..+
T Consensus 698 Ell~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~t 777 (1088)
T KOG4318|consen 698 ELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPT 777 (1088)
T ss_pred HHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhccccccc
Confidence 112233367789999999999999999999999998888888887765 56666666677776655433
Q ss_pred --chHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044131 616 --GYHVLLSNIYSAERDYLQAATVRQVVKKRKL 646 (784)
Q Consensus 616 --~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 646 (784)
..|.--+-+..+-...+.|.+.+...++...
T Consensus 778 tt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 778 TTCYYEGYAFFATQTEQKKAAKKCFERLEEQLT 810 (1088)
T ss_pred chHhhhhhHHHHhhHHHHHHHHHHHHHHHHccC
Confidence 3343333333334444477788888877643
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.4e-11 Score=127.46 Aligned_cols=529 Identities=11% Similarity=0.004 Sum_probs=300.8
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCc
Q 044131 95 YTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDT 174 (784)
Q Consensus 95 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~ 174 (784)
++..|...|+.|+.+||.+++..|+..|+.+.|- ++..|.-...+-...+++.++......++.+.|. +|..
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a 83 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLA 83 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCch
Confidence 5566777888898888999888888888888888 8888887777777788888888888888877665 6777
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHH-H---HHc---CCCCCChhhHHhHHHHHhccc-c------hhHHHHHHHHHHHhC
Q 044131 175 VLWNSMISGLMKNCCFQDSIWVFGD-M---VRN---GGTWLDSTSVAAVLPAVAEVQ-E------LRLGMEIQCLGLKLG 240 (784)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~-m---~~~---~g~~pd~~t~~~ll~a~~~~~-~------~~~a~~~~~~~~~~g 240 (784)
.+|+.|..+|.+.|+... ++..++ | ... .|+..-..-|...+..|-..- + ...-+.+.+..++.+
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887654 222222 1 110 022111112222222221110 0 011112223333333
Q ss_pred C--CCchhHHHH--HHHHHHh-cCChHHHHHHHhcCC-CCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhH
Q 044131 241 F--HDHVYVLTG--LVSFYSK-CGEVERAELLFRDIV-RPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTI 314 (784)
Q Consensus 241 ~--~~~~~~~~~--li~~y~~-~g~~~~A~~~f~~~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 314 (784)
. +........ .++-... ...+++-........ .++..++.+.+..-..+|+.+.|..++.+|.+.|.+.+.+-|
T Consensus 163 ~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred hhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 1 111111111 1111111 112333333333333 388999999999999999999999999999999999999999
Q ss_pred HhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCh-
Q 044131 315 VGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLT- 393 (784)
Q Consensus 315 ~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~- 393 (784)
..+|-+ .++......+...|...|+.|+..++.--+-...+.|....+....+.-.--....+..+..+...+.+.
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~ 319 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLR 319 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHH
Confidence 888866 7888889999999999999999999887776666655533333222111111122233333331111111
Q ss_pred ----hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCC---CchhhHhHHHHHHHhcCCHHHH
Q 044131 394 ----EEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFE---SNIYVSTALIDMYAKCGNIVEA 466 (784)
Q Consensus 394 ----~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~---~~~~~~~~Li~~y~k~g~~~~A 466 (784)
.-....+.+..-.|+......|.... -....|.-+...++-+.+..-... .++..+.++ +
T Consensus 320 ~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~------------l 386 (1088)
T KOG4318|consen 320 QNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL------------L 386 (1088)
T ss_pred HHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHH------------H
Confidence 11222333333334433333332222 222356666667766666432211 122223333 3
Q ss_pred HHHHhhcCCCCHH-HHHHHHHHHHH---cCCHHHHHHHHHHH------------HH----CCCCC-------CHHHHHHH
Q 044131 467 RELFDLMSHKSEV-TWNTMISGYGL---HGHGLEALQLFSEM------------LH----SGIRP-------SGVTFLSV 519 (784)
Q Consensus 467 ~~~f~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m------------~~----~g~~p-------d~~t~~~l 519 (784)
+..|.+...+... .++ .-.+... ..+..+..++.... .. .-..| =...-..+
T Consensus 387 rqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql 465 (1088)
T KOG4318|consen 387 RQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQL 465 (1088)
T ss_pred HHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHH
Confidence 4444444433222 111 1111111 11111111111111 10 00111 11123445
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc
Q 044131 520 LYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-----VEPGPAVWGALLGACMIH 594 (784)
Q Consensus 520 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-----~~p~~~~~~~ll~a~~~~ 594 (784)
+..|...-+..+++..-+... .+-+ ...|..||+.+.+..++++|..+.++.. +.-|..-+..+.....++
T Consensus 466 ~l~l~se~n~lK~l~~~ekye-~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~ 541 (1088)
T KOG4318|consen 466 HLTLNSEYNKLKILCDEEKYE-DLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRL 541 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHh
Confidence 556666656566554433332 2111 2678999999999999999999998874 233455677788888888
Q ss_pred CCHHHHHHHHHHHhc---CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccE
Q 044131 595 KDTNLARVASEKLFE---LDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTL 654 (784)
Q Consensus 595 g~~~~a~~~~~~~~~---l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~ 654 (784)
+....+..+.+..-+ ..|.......-+-|--+.+|+-+...+..+-+...|+.- .|--|
T Consensus 542 ~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 542 AILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 888888887776654 334444455566677788999999999999998888765 34444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-11 Score=123.45 Aligned_cols=472 Identities=11% Similarity=0.032 Sum_probs=284.8
Q ss_pred HhcCCCchHHHHHHHHHHHhCCCCchhH-HHHHHHHhhcCCChHHHHHHhc----cCCCCC----cccHHHHHHHHHcCC
Q 044131 118 ASACCDRSIGVLLHGHAIVSGYGSDLFV-GAALVDLYFKFSWVKSARKVFD----KMPEKD----TVLWNSMISGLMKNC 188 (784)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~~g~~~d~~~-~~~li~~y~~~g~~~~A~~~f~----~~~~~~----~~~~~~li~~~~~~g 188 (784)
+.......+|...++-+++..+-|+.-. --.+-+.|.|...+..|.+.++ ..|.-+ +...|.+--.+.+.|
T Consensus 211 y~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~g 290 (840)
T KOG2003|consen 211 YEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAG 290 (840)
T ss_pred hhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecc
Confidence 3333445566666666666655555422 1223345566666777766553 233211 122333444567777
Q ss_pred CchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 044131 189 CFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLF 268 (784)
Q Consensus 189 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 268 (784)
+++.|+..|+...+. .||..+-..++-.+...|+-+..++.|..++..-..+|..-| .+
T Consensus 291 qy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky-------i~----------- 349 (840)
T KOG2003|consen 291 QYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY-------IK----------- 349 (840)
T ss_pred cchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc-------cC-----------
Confidence 777777777776643 566665555555555566666666666666654333322111 00
Q ss_pred hcCCCCCeeeHHHHH-----HHHHhC--CCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhC
Q 044131 269 RDIVRPDLISCNAMI-----SGYTCN--GKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSG 341 (784)
Q Consensus 269 ~~~~~~d~~~~~~li-----~~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g 341 (784)
.-..||....|.-| ...-+. .+.++++-.-.++..--+.||-.. ..+-..+.+.......
T Consensus 350 -~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~~ 416 (840)
T KOG2003|consen 350 -EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHAE 416 (840)
T ss_pred -CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhhh
Confidence 00012222222211 111111 111222222222222122222110 0011111111111000
Q ss_pred CCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHH----HHH-HHHHHhCC-ChhHHHHHHHHHHhCCCCCCHHHH
Q 044131 342 IVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASW----NAM-IAGYTQNG-LTEEAISLFQEMQASKVAPNPVTV 415 (784)
Q Consensus 342 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~----~~l-i~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~ 415 (784)
+..+.. -.-..-|.+.|+++.|.+++.-...+|..+- |.| .--|.+.| ++..|.++-+...... +-|....
T Consensus 417 la~dle--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~ 493 (840)
T KOG2003|consen 417 LAIDLE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAAL 493 (840)
T ss_pred hhhhhh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHh
Confidence 111111 1122356789999999998887776654322 222 22334433 4566665555444321 2233333
Q ss_pred HHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcC
Q 044131 416 SSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHG 492 (784)
Q Consensus 416 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g 492 (784)
+.--+.....|++++|.+.+..+....-......||. .-.|-+.|++++|++.|-++. ..++...-.+.+.|....
T Consensus 494 ~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~le 572 (840)
T KOG2003|consen 494 TNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLE 572 (840)
T ss_pred hcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 3223333456899999999999987654333344443 335788999999999998765 467777788889999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC-CCCcchHHHHHHHHHhcCCHHHHHHH
Q 044131 493 HGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGF-KPLAEHYACMVDILGRAGQLEKALEF 571 (784)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~lv~~l~r~g~~~eA~~~ 571 (784)
+...|++++.+.... ++.|+..+..|...|-+.|+-.+|.+++-.- |.. +-+.++..-|..-|....-+++|..+
T Consensus 573 d~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 573 DPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred CHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999887764 5667778888999999999999999887643 343 44688888899999999999999999
Q ss_pred HHhCC-CCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 044131 572 IKGLA-VEPGPAVWGALLGAC-MIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDY 631 (784)
Q Consensus 572 ~~~m~-~~p~~~~~~~ll~a~-~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 631 (784)
|++.. ++|+..-|.-++..| ++.||+..|...|+..-..-|++....-.|..+....|.-
T Consensus 649 ~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 649 FEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99985 899999999998877 5689999999999999999999999988898888777753
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.1e-14 Score=146.21 Aligned_cols=253 Identities=17% Similarity=0.141 Sum_probs=112.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH-HHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCC
Q 044131 384 IAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILS-ACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGN 462 (784)
Q Consensus 384 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 462 (784)
...+.+.|++++|++++++.......|+...|-.++. .+-..++.+.|.+.++.+...+ +.++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 4455666777777777755443322344444444333 3445677777777777777655 2355566677766 68888
Q ss_pred HHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 044131 463 IVEARELFDLMS--HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSG-IRPSGVTFLSVLYACSHAGLVREGDEIFQSM 539 (784)
Q Consensus 463 ~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 539 (784)
+++|.+++...- .++...|..++..+.+.|+++++.+++++..... .++|...|..+...+.+.|+.++|.+.++..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 899988887654 3566778888888999999999999999977543 3456667778888889999999999999998
Q ss_pred HHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcc
Q 044131 540 IHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVG 616 (784)
Q Consensus 540 ~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 616 (784)
++. .|+ ......++.++...|+.+++.++++... .+.|+..|..+..++...|+.+.|...++++.+.+|+|+.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 854 575 7778889999999999999888887652 2456668999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 617 YHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 617 ~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
....+++++...|+.++|.++++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999998754
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-10 Score=116.93 Aligned_cols=435 Identities=12% Similarity=0.123 Sum_probs=274.5
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHh-HHHHHhcccchhHHHHHHHHHHHhCCCCch----hHHHHHHHH
Q 044131 180 MISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAA-VLPAVAEVQELRLGMEIQCLGLKLGFHDHV----YVLTGLVSF 254 (784)
Q Consensus 180 li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~ 254 (784)
|..-|..+....+|+..|+-+.+. ..-||.-.+.. +-+.+.+.+++..|...+...+..-...+. .+.|.+--.
T Consensus 207 laqqy~~ndm~~ealntyeiivkn-kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKN-KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcc-cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 445566677888888888888777 66676654322 223345566677777777766654322222 233444445
Q ss_pred HHhcCChHHHHHHHhcCCC--CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHH
Q 044131 255 YSKCGEVERAELLFRDIVR--PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNC 332 (784)
Q Consensus 255 y~~~g~~~~A~~~f~~~~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 332 (784)
+.+.|.+++|..-|+...+ |+..+--.||-.+..-|+.++..+.|.+|......||..-|.. .
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~-------~-------- 350 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK-------E-------- 350 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC-------C--------
Confidence 6777888888888877633 5555544445555556777777777877776655555443311 0
Q ss_pred HHHHHHHhCCCcchHHHHHHH-----HHHHhcC--CHHH----HHHHHhhcCCCChh---HHHH----------------
Q 044131 333 IHSFCLKSGIVSNSSVLTALS-----TVYSRLN--EMEA----ARKLFDESSEKSLA---SWNA---------------- 382 (784)
Q Consensus 333 i~~~~~~~g~~~~~~~~~~Li-----~~y~~~g--~~~~----A~~~f~~~~~~~~~---~~~~---------------- 382 (784)
.-.|+....|--+ .-..+.. +-++ |.++..-+..++.. -|..
T Consensus 351 --------~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dle 422 (840)
T KOG2003|consen 351 --------KDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLE 422 (840)
T ss_pred --------cCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhh
Confidence 0011111111111 1111111 1111 11222222222211 1211
Q ss_pred --HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH--HHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHH
Q 044131 383 --MIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSS--ILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYA 458 (784)
Q Consensus 383 --li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~--ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 458 (784)
-...|.++|+++.|++++.-..+..-+.-...-+. .|.-...-.++..|.+.-+.++... .-+....+.-.+.-.
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAF 501 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceee
Confidence 12357899999999999988876543322222222 2222222335666666666555322 112222222223344
Q ss_pred hcCCHHHHHHHHhhcCCCCHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 044131 459 KCGNIVEARELFDLMSHKSEVTWNTMIS---GYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEI 535 (784)
Q Consensus 459 k~g~~~~A~~~f~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 535 (784)
..|+++.|.+.+++....|..+-.+|.. .+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|.++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 5799999999999999887765555543 367789999999999887653 345666777888889999999999999
Q ss_pred HHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHH-HhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 044131 536 FQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFI-KGLA-VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDP 612 (784)
Q Consensus 536 ~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~-~~m~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p 612 (784)
+.+.. .+.| |+...+.|.++|-+.|+-..|.+.. +... ++-+..+...|...|....-.+.+...++++--+.|
T Consensus 581 ~~q~~---slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 581 LMQAN---SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHhc---ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 98775 4455 5889999999999999999998875 4444 334555655566666667778999999999999999
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 613 ENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 613 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+.+....+++..+.+.|++..|.++++.+..
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9988889999999999999999999988764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.9e-09 Score=105.66 Aligned_cols=482 Identities=13% Similarity=0.101 Sum_probs=340.1
Q ss_pred cCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHH
Q 044131 155 KFSWVKSARKVFDKMPE---KDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGME 231 (784)
Q Consensus 155 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 231 (784)
..+++..|+.+|++... ++...|--.+..=.++.....|..++++.... -.+.|..-| --+-.=-.+|++..|++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWy-KY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWY-KYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHH-HHHHHHHHhcccHHHHH
Confidence 45677788888887664 56777887888888888888888888887754 223333322 22223345688888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC--CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHc-C-C
Q 044131 232 IQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDI--VRPDLISCNAMISGYTCNGKTESSLRLFRQLLAS-A-E 307 (784)
Q Consensus 232 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-~ 307 (784)
+|+.-.+ .+|+...|++.|++=.+...++.|+.++++. ..|++.+|--...-=.++|+..-|..+|....+. | -
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 8888765 5788899999999988889999999999886 5588888888777777888888888888876553 1 0
Q ss_pred CCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCc-chHHHHHHHHHHHhcCCHHHHHHH--------HhhcCCC---
Q 044131 308 RVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVS-NSSVLTALSTVYSRLNEMEAARKL--------FDESSEK--- 375 (784)
Q Consensus 308 ~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~~~g~~~~A~~~--------f~~~~~~--- 375 (784)
.-+...|++...-=......+.+.-|+...+..-... ...++..+...--+.|+....... ++.+...
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 1112233333333334567788888888887763222 245566666655566665443332 2223333
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHH---hhhCchHHHHHHHHHHHHcCCCC
Q 044131 376 SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNP-------VTVSSILSAC---AQLGAISLGKWVHELVKSRNFES 445 (784)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~---~~~~~~~~a~~i~~~~~~~g~~~ 445 (784)
|-.+|--.+..--..|+.+...++|.+.... ++|-. ..|.-+=-+| ....+.+.++++++..++ -++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCc
Confidence 4457777777777889999999999999875 56632 1222221222 356789999999999988 3455
Q ss_pred chhhHhHHHHHHH----hcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044131 446 NIYVSTALIDMYA----KCGNIVEARELFDLMS--HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSV 519 (784)
Q Consensus 446 ~~~~~~~Li~~y~----k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 519 (784)
..+++.-+=-||+ ++-++..|++++.... .|-..++...|..-.+.+.++....+|++.++-+ +-|..++...
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ky 477 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKY 477 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHH
Confidence 6677776666665 6889999999998876 5777888888888899999999999999999954 4466788877
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHH-----h
Q 044131 520 LYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-VEPGPAVWGALLGACM-----I 593 (784)
Q Consensus 520 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~ll~a~~-----~ 593 (784)
...=...|+.|.|..+|+-.+..-.+......|.+.||.=...|.++.|..++++.- ..+...+|-++..--. .
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~ 557 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQ 557 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccc
Confidence 777788999999999999988654444445678888888899999999999999873 4556668988776433 3
Q ss_pred cC-----------CHHHHHHHHHHHhc----CCCCCc--chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 594 HK-----------DTNLARVASEKLFE----LDPENV--GYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 594 ~g-----------~~~~a~~~~~~~~~----l~p~~~--~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.+ ++..|..+++++.. .+|... ......-++-...|.-.+...|-++|.+
T Consensus 558 ~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 558 EDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred cccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 34 56778888888764 334222 2223344566677888888888877754
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-09 Score=110.72 Aligned_cols=400 Identities=15% Similarity=0.093 Sum_probs=229.3
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCCC-hhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCc-hhHHHHHHHHHH
Q 044131 179 SMISGLMKNCCFQDSIWVFGDMVRNGGTWLD-STSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDH-VYVLTGLVSFYS 256 (784)
Q Consensus 179 ~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~ 256 (784)
..-.-|.++|.+++|++.|.+.. ...|| ++-|...-.+|...|+|+...+--...++ +.|+ +..+..-.+++-
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI---~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAI---ELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHE 194 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHH---hcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHH
Confidence 34455778899999999999888 45788 55566666666888999888877766665 3444 334555566777
Q ss_pred hcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHH--------HHHc---CCCCChhhHHhHHHhhcCCC
Q 044131 257 KCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQ--------LLAS---AERVNSSTIVGLIPVFYPFG 325 (784)
Q Consensus 257 ~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~--------m~~~---g~~p~~~t~~~ll~~~~~~~ 325 (784)
+.|++++|..= +|-.++..+|....-.--+.+++++ -... .+.|......+.+..+...-
T Consensus 195 ~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 77888877531 2233333444333322223333322 1121 13355444444444332110
Q ss_pred ChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhc-CCHHHHHHHHhhc-------CCCC---h------hHHHHHHHHHH
Q 044131 326 HLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRL-NEMEAARKLFDES-------SEKS---L------ASWNAMIAGYT 388 (784)
Q Consensus 326 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~-g~~~~A~~~f~~~-------~~~~---~------~~~~~li~~~~ 388 (784)
.. .+...+-..|......+-..|... ..+..|...+.+- ...+ . .+.+.-..-+.
T Consensus 266 ~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 266 KP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred cc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 00 000000011222222222222211 1122222222210 0001 0 00000011122
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHH
Q 044131 389 QNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARE 468 (784)
Q Consensus 389 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 468 (784)
-.|+.-.|.+.|+..+.....++ ..|--+..+|....+.++...
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~------------------------------------~lyI~~a~~y~d~~~~~~~~~ 381 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN------------------------------------SLYIKRAAAYADENQSEKMWK 381 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc------------------------------------hHHHHHHHHHhhhhccHHHHH
Confidence 23444444444444444322222 113333344555555555555
Q ss_pred HHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC
Q 044131 469 LFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHG 544 (784)
Q Consensus 469 ~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 544 (784)
.|+...+ .|..+|.--...+.-.+++++|+.=|++.+. +.|+ ...|..+-.+..+.+.++++...|+...+++
T Consensus 382 ~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF- 458 (606)
T KOG0547|consen 382 DFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF- 458 (606)
T ss_pred HHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 5554431 2333444444444555677788888887777 4554 4567777777788888999999999887643
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 545 FKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEPG---------PAVWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 545 ~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
+-.++.|+-....|...++++.|.+.++.. .++|+ +.+..+++-.-.+ +|+.+|+.+.+++++++|..
T Consensus 459 -P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkc 536 (606)
T KOG0547|consen 459 -PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKC 536 (606)
T ss_pred -CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchH
Confidence 444788999999999999999999998764 34443 4455555554433 99999999999999999999
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 615 VGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 615 ~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
...|..|+.+-.+.|+.++|.++|+.-
T Consensus 537 e~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 537 EQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999999999764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-08 Score=104.97 Aligned_cols=491 Identities=14% Similarity=0.102 Sum_probs=385.8
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCc
Q 044131 114 VLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPE---KDTVLWNSMISGLMKNCCF 190 (784)
Q Consensus 114 ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 190 (784)
|=++.....+.+.|+-++..+++.- +.+... .-+|++.--++.|.+++++..+ .+...|-+-..-=-++|+.
T Consensus 382 LWKaAVelE~~~darilL~rAvecc-p~s~dL----wlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~ 456 (913)
T KOG0495|consen 382 LWKAAVELEEPEDARILLERAVECC-PQSMDL----WLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNV 456 (913)
T ss_pred HHHHHHhccChHHHHHHHHHHHHhc-cchHHH----HHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCH
Confidence 3345556677788999999988864 333333 4456667778889999877654 4777887766666678888
Q ss_pred hHHHHHHHH----HHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCChHHH
Q 044131 191 QDSIWVFGD----MVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHD--HVYVLTGLVSFYSKCGEVERA 264 (784)
Q Consensus 191 ~~A~~l~~~----m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A 264 (784)
+....+..+ +..+ |+..|..-|..=..+|-..|..-.+..+...++..|++. -..+|+.-.+.+.+.+.++-|
T Consensus 457 ~mv~kii~rgl~~L~~n-gv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ca 535 (913)
T KOG0495|consen 457 DMVEKIIDRGLSELQAN-GVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECA 535 (913)
T ss_pred HHHHHHHHHHHHHHhhc-ceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHH
Confidence 887777655 4556 899999999999999999999999999999999888764 356888889999999999999
Q ss_pred HHHHhcCCC---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhC
Q 044131 265 ELLFRDIVR---PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSG 341 (784)
Q Consensus 265 ~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g 341 (784)
+.+|....+ .+...|...+..--..|..++-..+|++.... .+-....+....+..-..|++..++.++..+....
T Consensus 536 rAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~ 614 (913)
T KOG0495|consen 536 RAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN 614 (913)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Confidence 999987755 45667887777667789999999999998875 23333444444555566799999999999998876
Q ss_pred CCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH-HHHHHH
Q 044131 342 IVSNSSVLTALSTVYSRLNEMEAARKLFDESSE--KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNP-VTVSSI 418 (784)
Q Consensus 342 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~l 418 (784)
+.+..+|-+-+..-.....++.|+.+|.+... +....|.--+..---.+..++|++++++.++. -|+- ..|..+
T Consensus 615 -pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lml 691 (913)
T KOG0495|consen 615 -PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLML 691 (913)
T ss_pred -CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHH
Confidence 44788999999999999999999999987654 45567776666666778999999999988874 4554 455666
Q ss_pred HHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHH
Q 044131 419 LSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGL 495 (784)
Q Consensus 419 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~ 495 (784)
-..+-+.++.+.|+..|..=.+. ++..+..|-.|...--+.|.+-.|+.+|++.. .+|...|-..|..-.+.|..+
T Consensus 692 GQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 692 GQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 66777888888888877665543 35567889999999999999999999999876 357889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 044131 496 EALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL 575 (784)
Q Consensus 496 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m 575 (784)
.|..+..+.++. .+.+...|..-|...-+.++-......+. ..+-|....-.+..++-...+++.|.+.|++.
T Consensus 771 ~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ra 843 (913)
T KOG0495|consen 771 QAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERA 843 (913)
T ss_pred HHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998886 56666777777766666666444443333 33456677778888899999999999999887
Q ss_pred -CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHH
Q 044131 576 -AVEPGPA-VWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLS 622 (784)
Q Consensus 576 -~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 622 (784)
...||.. +|..+..-...||.-+.-+.++.+...-+|.....+...+
T Consensus 844 vk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 844 VKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 4677654 9999999999999999999999999999999876665544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-11 Score=127.50 Aligned_cols=242 Identities=15% Similarity=0.142 Sum_probs=132.2
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcC--CCCchhhHhHHHHHHHhcCCHHH-HHHH
Q 044131 393 TEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRN--FESNIYVSTALIDMYAKCGNIVE-AREL 469 (784)
Q Consensus 393 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~k~g~~~~-A~~~ 469 (784)
..+|+..|..... .+.-.......+..+|..++++++++.+|+.+.+.. ...+..+|++.+--+-+.=.+.. |..+
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4555555555222 222233444455555666666666666666555432 01134445444432222111111 1111
Q ss_pred HhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC
Q 044131 470 FDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL 548 (784)
Q Consensus 470 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 548 (784)
. .+......+|-++..+|.-.++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+..+ ..+
T Consensus 414 i-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~ 485 (638)
T KOG1126|consen 414 I-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVD 485 (638)
T ss_pred H-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCC
Confidence 1 11223455666666666666666666666666666 445 44555555555555666666666666544 334
Q ss_pred cchHHHH---HHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 044131 549 AEHYACM---VDILGRAGQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSN 623 (784)
Q Consensus 549 ~~~~~~l---v~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 623 (784)
..||+++ .-.|.+.++++.|+-.|++. .+.|. .++...+...+...|+.|+|.+.+++++.++|.|+-.-+..+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 4455543 33456666666666666655 35553 3344555556666666666666666666666666666666666
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 044131 624 IYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 624 ~y~~~g~~~~a~~~~~~m~~ 643 (784)
++...+++++|...++.+++
T Consensus 566 il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHhhcchHHHHHHHHHHHH
Confidence 66666666666666666665
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-09 Score=110.88 Aligned_cols=245 Identities=16% Similarity=0.124 Sum_probs=181.4
Q ss_pred hCCChhHHHHHHHHHHhCCC-C-CCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHH
Q 044131 389 QNGLTEEAISLFQEMQASKV-A-PNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEA 466 (784)
Q Consensus 389 ~~g~~~~A~~l~~~m~~~g~-~-pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A 466 (784)
...++++|+.+|+++.+... + -|..||+.+|-.-.....+.---+....+ . .--+.+...+.+-|+-.++.+.|
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i--d--KyR~ETCCiIaNYYSlr~eHEKA 349 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI--D--KYRPETCCIIANYYSLRSEHEKA 349 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh--c--cCCccceeeehhHHHHHHhHHHH
Confidence 34566667777776666521 1 14556666664332222111111111111 1 12345667777888888999999
Q ss_pred HHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 044131 467 RELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDH 543 (784)
Q Consensus 467 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 543 (784)
...|++..+ +....|+.|..-|....+...|++.+++.++-. +-|...|.+|..+|.-.+...-|+-+|++..
T Consensus 350 v~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~--- 425 (559)
T KOG1155|consen 350 VMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL--- 425 (559)
T ss_pred HHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---
Confidence 999988764 456689999999999999999999999998842 4577889999999999999999999999876
Q ss_pred CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-------CCCC
Q 044131 544 GFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACMIHKDTNLARVASEKLFE-------LDPE 613 (784)
Q Consensus 544 ~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-------l~p~ 613 (784)
.+.|+ ...|.+|.+.|.+.++++||++.+++.- -..+...+..|...+-..++.++|...+++-++ .+|+
T Consensus 426 ~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~ 505 (559)
T KOG1155|consen 426 ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDE 505 (559)
T ss_pred hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchH
Confidence 55665 8899999999999999999999998873 233557888999999999999999999998887 4555
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 614 NVGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 614 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
...+-.-|++-+.+.++|++|...-...
T Consensus 506 t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 506 TIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 5556677999999999999998765543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-10 Score=122.46 Aligned_cols=224 Identities=13% Similarity=0.050 Sum_probs=140.1
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchH
Q 044131 353 STVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAIS 429 (784)
Q Consensus 353 i~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 429 (784)
...+...|+++.|...++...+ .+......+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~---------- 228 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE---------- 228 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH----------
Confidence 4556666666666666665543 24445566666666667777777777766665433211 111000
Q ss_pred HHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 430 LGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 430 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
...+..++....+..+.+...++++.++ ..++..+..+..++...|+.++|.+++++..+
T Consensus 229 -----------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 229 -----------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred -----------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0112222222233334455555556555 24666777777778888888888888877776
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH
Q 044131 507 SGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPGPAVW 584 (784)
Q Consensus 507 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~ 584 (784)
. +||... .++.+....++.+++.+..+...+. .|+ ...+.++..++.+.|++++|.+.|+.. ...|+...+
T Consensus 292 ~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~ 364 (398)
T PRK10747 292 R--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDY 364 (398)
T ss_pred c--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH
Confidence 3 444421 1233334457788888888877754 343 556777788888888888888888776 467888887
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 044131 585 GALLGACMIHKDTNLARVASEKLFELD 611 (784)
Q Consensus 585 ~~ll~a~~~~g~~~~a~~~~~~~~~l~ 611 (784)
..|..++...|+.++|...+++.+.+-
T Consensus 365 ~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 365 AWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 788888888888888888888887653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.4e-10 Score=121.68 Aligned_cols=273 Identities=10% Similarity=0.046 Sum_probs=205.3
Q ss_pred cCCHHHHHHHHhhcCCC--Chh-HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHhhhCchHHHHH
Q 044131 359 LNEMEAARKLFDESSEK--SLA-SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVS--SILSACAQLGAISLGKW 433 (784)
Q Consensus 359 ~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~~ 433 (784)
.|+++.|++.+...++. +.. .+-.......+.|++++|...|.++.+. .|+..... .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 68899999888876553 222 3322233447889999999999999864 56554333 33456778899999999
Q ss_pred HHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCC---CH--------HHHHHHHHHHHHcCCHHHHHHHHH
Q 044131 434 VHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHK---SE--------VTWNTMISGYGLHGHGLEALQLFS 502 (784)
Q Consensus 434 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~--------~~~~~li~~~~~~g~~~~A~~~~~ 502 (784)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+. +. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998876 667888999999999999999999999888742 11 134444444444555566666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-
Q 044131 503 EMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEPG- 580 (784)
Q Consensus 503 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~- 580 (784)
..-.. .+.+......+..++...|+.++|.+.++...+ ..|+.... ++......|+.+++.+.+++. ...|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 65433 355777888899999999999999999998874 34554222 222333559999999999887 34554
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 581 PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 581 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
+..+.++...|...++++.|+..++++++.+|++. .+..|+.++.+.|+-++|.+.++.-
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55788899999999999999999999999999864 5779999999999999999998754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.1e-09 Score=114.82 Aligned_cols=221 Identities=9% Similarity=-0.052 Sum_probs=99.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhh-------HhHHHHH
Q 044131 384 IAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYV-------STALIDM 456 (784)
Q Consensus 384 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~-------~~~Li~~ 456 (784)
...+.+.|++++|...++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.... +..+++.
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555432 11233444444455555555555555555555443221111 1111111
Q ss_pred HHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHccCCHH
Q 044131 457 YAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTF---LSVLYACSHAGLVR 530 (784)
Q Consensus 457 y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~---~~ll~a~~~~g~~~ 530 (784)
-......+...+.++..++ .+...+..+...+...|+.++|++++++..+. .||.... ..........++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChH
Confidence 1112223344444444442 36677777777777777777777777777774 3443311 11111112234455
Q ss_pred HHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044131 531 EGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKG---LAVEPGPAVWGALLGACMIHKDTNLARVASEKL 607 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~---m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 607 (784)
.+.+.++...+...-.|+.....++..++.+.|++++|.+.|++ ....|+...+..|...+...|+.+.|.+++++.
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555554443321111112333444444444444444444441 123444444444444444444444444444443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-10 Score=122.56 Aligned_cols=275 Identities=13% Similarity=0.036 Sum_probs=213.8
Q ss_pred CHHHHHHHHhhcCCC--Chh-HHHHHHHHHHhCCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhCchHHHHHHH
Q 044131 361 EMEAARKLFDESSEK--SLA-SWNAMIAGYTQNGLTEEAISLFQEMQASK--VAPNPVTVSSILSACAQLGAISLGKWVH 435 (784)
Q Consensus 361 ~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 435 (784)
...+|...|..++.. |.. ...-+..+|...+++++|.++|+...+.. ..-+...|+++|--+-+. .+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 457888888886543 333 33445678999999999999999998752 112556777777544321 111222
Q ss_pred H-HHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 044131 436 E-LVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHK---SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP 511 (784)
Q Consensus 436 ~-~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 511 (784)
. .+++.. +..+.+|.++.+.|+-+++.+.|++.|++..+- ...+|+.+..-+.....++.|...|+..+. +.|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 222222 556889999999999999999999999998853 556888888888999999999999998875 455
Q ss_pred CH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 044131 512 SG-VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGAL 587 (784)
Q Consensus 512 d~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~l 587 (784)
.. ..|..+...|.+.++++.|+-.|+... .|.|. .....++...+-+.|+.|+|++++++. .+.| |+..----
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 44 467788899999999999999999887 77886 667778888999999999999999987 3444 44444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 645 (784)
...+...++.++|.+.+|++-++-|+++..|.+++.+|.+.|+.+.|..-+..+.+-.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 5556678999999999999999999999999999999999999999998887766533
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.4e-08 Score=101.76 Aligned_cols=347 Identities=12% Similarity=0.133 Sum_probs=250.5
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhc--CCCChhHHHHHHHHHHhCCChhHHHHHHH
Q 044131 324 FGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDES--SEKSLASWNAMIAGYTQNGLTEEAISLFQ 401 (784)
Q Consensus 324 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 401 (784)
.|++..+++++..-.+ .+|+...|++.|+.-.+...++.|+.++++. ..|++.+|--...-=-++|...-|..+|.
T Consensus 154 LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred hcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 4566666666665543 4788888888888888888888888888873 46788888777776777888888888887
Q ss_pred HHHhCCCCCCHHHHHHHHHHH----hhhCchHHHHHHHHHHHHcCCCCc--hhhHhHHHHHHHhcCCHHHHHHHH-----
Q 044131 402 EMQASKVAPNPVTVSSILSAC----AQLGAISLGKWVHELVKSRNFESN--IYVSTALIDMYAKCGNIVEARELF----- 470 (784)
Q Consensus 402 ~m~~~g~~pd~~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~Li~~y~k~g~~~~A~~~f----- 470 (784)
..... -.|...-..+..++ ......+.|.-++..+++.- +.+ ...|..+...--+-|+......+.
T Consensus 232 rAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 232 RAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 77653 22333333334444 35567888999999988762 333 455666665555566654443332
Q ss_pred ---hhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---HccCCHHHHHH
Q 044131 471 ---DLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGV-------TFLSVLYAC---SHAGLVREGDE 534 (784)
Q Consensus 471 ---~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-------t~~~ll~a~---~~~g~~~~a~~ 534 (784)
+.+.. -|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=.+| ....+++.+.+
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 22222 36678988888888889999999999999976 677331 233332333 34788999999
Q ss_pred HHHHhHHhcCCCCC-cchHHHHHHHH----HhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 535 IFQSMIHDHGFKPL-AEHYACMVDIL----GRAGQLEKALEFIKGL-AVEPGPAVWGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 535 ~~~~m~~~~~~~p~-~~~~~~lv~~l----~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
+|+..++ +.|. ..+++-+--+| .|+-++..|.+.+... +.-|..-++...+..-.+.++++....+|++.+
T Consensus 388 vyq~~l~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 388 VYQACLD---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHh---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999873 5565 55666555444 4888999999999765 688999999999999999999999999999999
Q ss_pred cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHH
Q 044131 609 ELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEK 683 (784)
Q Consensus 609 ~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~ 683 (784)
+..|.+..++...+.+-...|++|.|..++....+......|..-|- ....|-.....+..+..+|..|-+
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk----aYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK----AYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH----HhhhhhhhcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988777667777662 112333333445566666665533
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-09 Score=116.30 Aligned_cols=278 Identities=12% Similarity=0.027 Sum_probs=200.2
Q ss_pred HhcCCHHHHHHHHhhcCCC--C-hhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhhhCchHHH
Q 044131 357 SRLNEMEAARKLFDESSEK--S-LASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPV--TVSSILSACAQLGAISLG 431 (784)
Q Consensus 357 ~~~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~~~~~~a 431 (784)
...|+++.|.+.+.+..+. + ...+-.....+.+.|++++|.+.|.+..+.. |+.. .-..........|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 3578999999988776543 2 2333444566778899999999999987643 4432 333346677789999999
Q ss_pred HHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHH----HHHHHHHcCCHHHHHHHHHHH
Q 044131 432 KWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNT----MISGYGLHGHGLEALQLFSEM 504 (784)
Q Consensus 432 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~----li~~~~~~g~~~~A~~~~~~m 504 (784)
...++.+.+.. +.+..+...+..+|...|++++|.+.+..+.+ .+...+.. ...++...+..+++.+.+.++
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999886 66778899999999999999999999988874 23332321 111223333344445566666
Q ss_pred HHCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcch---HHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 044131 505 LHSGI---RPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEH---YACMVDILGRAGQLEKALEFIKGL-AV 577 (784)
Q Consensus 505 ~~~g~---~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~lv~~l~r~g~~~eA~~~~~~m-~~ 577 (784)
.+... +.+...+..+...+...|+.++|.+.+++..+. .|+... .....-.....++.+.+.+.+++. ..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 65421 137778888889999999999999999999854 455432 111112223357788888888765 23
Q ss_pred CCC-H--HHHHHHHHHHHhcCCHHHHHHHHH--HHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 578 EPG-P--AVWGALLGACMIHKDTNLARVASE--KLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 578 ~p~-~--~~~~~ll~a~~~~g~~~~a~~~~~--~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
.|+ + ....++.+.|...|++++|...++ ..++..|++.. +..++.++.+.|+.++|.+++++-
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 443 3 677899999999999999999999 57788887654 669999999999999999998764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.3e-10 Score=110.92 Aligned_cols=197 Identities=17% Similarity=0.110 Sum_probs=164.9
Q ss_pred chhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044131 446 NIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYA 522 (784)
Q Consensus 446 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 522 (784)
....+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 456677788899999999999999987652 356788889999999999999999999998864 3455677788888
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLA 600 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a 600 (784)
+...|++++|.++|+...+..........+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+++.|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998753222223556778889999999999999999876 3344 456888899999999999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 601 RVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 601 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...++++++..|+++..+..++.++...|++++|....+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999998888999999999999999999998887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-11 Score=125.92 Aligned_cols=189 Identities=17% Similarity=0.127 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhh
Q 044131 348 VLTALSTVYSRLNEMEAARKLFDESS--EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASK-VAPNPVTVSSILSACAQ 424 (784)
Q Consensus 348 ~~~~Li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~ 424 (784)
.+..++.. ...+++++|.+++...- .++...|..++..+.+.++++++.+++.+..... .+++...|......+.+
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred cccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 34444444 45566666666555432 2344555666666666677777776666655432 23344555555555666
Q ss_pred hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044131 425 LGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLF 501 (784)
Q Consensus 425 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 501 (784)
.|+.++|...++.+++.. |.|..+.+.++.++...|+.+++.+++.... ..|...|..+..+|...|+.++|+..|
T Consensus 159 ~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYL 237 (280)
T ss_dssp CCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccc
Confidence 666666666666666653 3345566666666666666666555554433 234455666666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 044131 502 SEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSM 539 (784)
Q Consensus 502 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 539 (784)
++..... +.|..+...+..++...|+.++|.++.+..
T Consensus 238 ~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 238 EKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred ccccccc-cccccccccccccccccccccccccccccc
Confidence 6665531 234555555666666666666666655544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.2e-08 Score=99.42 Aligned_cols=190 Identities=10% Similarity=0.089 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHH
Q 044131 379 SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN-PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMY 457 (784)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 457 (784)
|...+..-|.-.++.++|...|++..+. .|. ...++.+..-|....+...|.+-++.+++-. +.|-..|-.|..+|
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 3334444455555556666666655543 232 2334444445555555556666666555543 44555555666666
Q ss_pred HhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 044131 458 AKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDE 534 (784)
Q Consensus 458 ~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 534 (784)
.-.+...-|+-.|++.. ..|...|.+|..+|.+.++.++|++.|.+....| ..+...+..|...+.+.++.++|..
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHH
Confidence 66666666666665544 2355566666666666666666666666665544 3344556666666666666666666
Q ss_pred HHHHhHHhc---C-CCC-CcchHHHHHHHHHhcCCHHHHHHHH
Q 044131 535 IFQSMIHDH---G-FKP-LAEHYACMVDILGRAGQLEKALEFI 572 (784)
Q Consensus 535 ~~~~m~~~~---~-~~p-~~~~~~~lv~~l~r~g~~~eA~~~~ 572 (784)
+|..-++.. | +.| ......-|..-+-+.+++++|....
T Consensus 488 ~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 488 YYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 665554322 1 122 1222222344445555555555443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-08 Score=104.06 Aligned_cols=253 Identities=12% Similarity=0.070 Sum_probs=179.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCH
Q 044131 384 IAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNI 463 (784)
Q Consensus 384 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 463 (784)
..-+...+++.+.++++....+.. ++....+..-|..+..+|+..+-..+-..+++. .|..+.+|-++.--|.-.|+.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCc
Confidence 334445566666666666665432 333333333344445555544444443444443 355677777888788888999
Q ss_pred HHHHHHHhhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 044131 464 VEARELFDLMSHKS---EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMI 540 (784)
Q Consensus 464 ~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 540 (784)
.+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+.-+..-|...++.+.|.++|.+..
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999998776433 458999999999999999999988877663 22233334455566888899999999999776
Q ss_pred HhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-----C---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 044131 541 HDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-----V---EP-GPAVWGALLGACMIHKDTNLARVASEKLFEL 610 (784)
Q Consensus 541 ~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-----~---~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l 610 (784)
++.|+ +...+-+.-..-..+.+.+|..+|+... . .+ -..+|+.|..+|++.+.+++|+..+++++.+
T Consensus 408 ---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 408 ---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred ---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 67775 4455555555556788888888887642 1 11 2346888889999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 611 DPENVGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 611 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
.|.++.+|..++-+|...|+.+.|...+.+-.
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999999887643
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.1e-11 Score=87.05 Aligned_cols=50 Identities=40% Similarity=0.582 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044131 476 KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSH 525 (784)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 525 (784)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.18 E-value=6e-11 Score=86.16 Aligned_cols=50 Identities=28% Similarity=0.598 Sum_probs=48.1
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 044131 375 KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQ 424 (784)
Q Consensus 375 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 424 (784)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.2e-08 Score=97.10 Aligned_cols=288 Identities=12% Similarity=0.078 Sum_probs=171.1
Q ss_pred HHHHHHh--CCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhc
Q 044131 282 MISGYTC--NGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRL 359 (784)
Q Consensus 282 li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~ 359 (784)
+..|..+ .|++.+|.++..+-.+.+-.| ...|.....+....|+.+.+......+.+..-.++..+.-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 4444443 588888888888866665444 2345555667777788888888888877775567777777888888888
Q ss_pred CCHHHHHHHHhh---cCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhhhCchH
Q 044131 360 NEMEAARKLFDE---SSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNP-------VTVSSILSACAQLGAIS 429 (784)
Q Consensus 360 g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~~~~~~~~ 429 (784)
|+.+.|+.-.++ |..++.........+|.+.|++.+.+.+..+|.+.|+--|+ .++..++.-+...+..+
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 888888776665 44567778888888888888888888888888888765554 34444554444444444
Q ss_pred HHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 044131 430 LGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGI 509 (784)
Q Consensus 430 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 509 (784)
.-++.++..-+. ...++.+..+++.-+..| |+.++|.++.++..+.+.
T Consensus 247 gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l-------------------------------~~~~~A~~~i~~~Lk~~~ 294 (400)
T COG3071 247 GLKTWWKNQPRK-LRNDPELVVAYAERLIRL-------------------------------GDHDEAQEIIEDALKRQW 294 (400)
T ss_pred HHHHHHHhccHH-hhcChhHHHHHHHHHHHc-------------------------------CChHHHHHHHHHHHHhcc
Confidence 433333333221 122333444444444444 455555555555444444
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 044131 510 RPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEPGPAVWGALL 588 (784)
Q Consensus 510 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll 588 (784)
.|+ ...+-.+...++.+.-.+..+...+.++-.| ..+..|..+|.+.+.+.+|.+.++.. +..|+...|.-+.
T Consensus 295 D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la 368 (400)
T COG3071 295 DPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELA 368 (400)
T ss_pred Chh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHH
Confidence 444 1222234444554444444444444443333 34455555555555555555555543 3555555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHh
Q 044131 589 GACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~~~ 608 (784)
.++-..|+.+.|.+..++.+
T Consensus 369 ~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 369 DALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 56656666666655555544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.8e-08 Score=95.34 Aligned_cols=312 Identities=14% Similarity=0.140 Sum_probs=170.3
Q ss_pred hCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhC-CCc--chHHHHHHHHHHHhcCCHHH
Q 044131 288 CNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSG-IVS--NSSVLTALSTVYSRLNEMEA 364 (784)
Q Consensus 288 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g-~~~--~~~~~~~Li~~y~~~g~~~~ 364 (784)
-+.++++|+++|-+|.+.. +-+..+-.++-+.+-+.|..+.|..+|.-+.++. +.. -......|..=|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 4578999999999998741 1122223344445555666666666666555442 111 12233344455555555555
Q ss_pred HHHHHhhcCCCCh---hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHc
Q 044131 365 ARKLFDESSEKSL---ASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSR 441 (784)
Q Consensus 365 A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 441 (784)
|+.+|..+.+.+. .....|+..|-+..++++|++.-+++.+.+-++..+-.
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI-------------------------- 179 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI-------------------------- 179 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH--------------------------
Confidence 5555555444222 23333455555555555555555555444333222111
Q ss_pred CCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 044131 442 NFESNIYVSTALIDMYAKCGNIVEARELFDLMSHK---SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLS 518 (784)
Q Consensus 442 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 518 (784)
...|.-|...+....+.+.|..++.+..+. .+..--.+...+...|++..|++.++...+++..--..+...
T Consensus 180 -----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 180 -----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred -----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 122334444445556666666666665532 222333344556777888888888888887643333345666
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCH
Q 044131 519 VLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFI-KGLAVEPGPAVWGALLGACMIHKDT 597 (784)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~-~~m~~~p~~~~~~~ll~a~~~~g~~ 597 (784)
|..+|.+.|+.+++..++..+.+. .+..+.-..+.+......-.++|...+ +...-+|+...+..|+..-..
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~---- 327 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLA---- 327 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhc----
Confidence 777888888888888888777643 344444444444444444444444443 233445665555555443111
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEE
Q 044131 598 NLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFT 665 (784)
Q Consensus 598 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~ 665 (784)
-+.-|+|.+...+.+.|....++..|.+--..-+=+.|.|.
T Consensus 328 ---------------------------daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 328 ---------------------------DAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred ---------------------------cccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 12235577777777888777777777666555555556664
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-05 Score=84.10 Aligned_cols=439 Identities=13% Similarity=0.172 Sum_probs=226.2
Q ss_pred HHHHhhCCCChhHHHHHhcc----CCC-CCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q 044131 47 LAHRLSDFKATCYARALFFS----IPK-PDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASAC 121 (784)
Q Consensus 47 l~~~y~~~g~~~~A~~~f~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 121 (784)
-+....+.|++..-+++|+. ||. .....|...+.-..+.|-++-++. ++++..+ +.|. .-.--+.-+...
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~r-vyrRYLk--~~P~--~~eeyie~L~~~ 182 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIR-VYRRYLK--VAPE--AREEYIEYLAKS 182 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHH-HHHHHHh--cCHH--HHHHHHHHHHhc
Confidence 34444556777777777765 222 223456666666666777777777 6666654 2232 234445555566
Q ss_pred CCchHHHHHHHHHHHhC------CCCchhHHHHHHHHhhcCCChH---HHHHHhccCCCC--C--cccHHHHHHHHHcCC
Q 044131 122 CDRSIGVLLHGHAIVSG------YGSDLFVGAALVDLYFKFSWVK---SARKVFDKMPEK--D--TVLWNSMISGLMKNC 188 (784)
Q Consensus 122 ~~~~~a~~~~~~~~~~g------~~~d~~~~~~li~~y~~~g~~~---~A~~~f~~~~~~--~--~~~~~~li~~~~~~g 188 (784)
+++.+|.+.++.++... ...+-..|.-+-+..++.-+.- ....+++.+..+ | ...|++|..-|.+.|
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 67777776666554221 1334445555555555443221 223334444332 2 346777777777777
Q ss_pred CchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 044131 189 CFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLF 268 (784)
Q Consensus 189 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 268 (784)
.+++|.++|++-.+. .....-|..+.++++.......+..+- .....+..+. ..-+++-...-|
T Consensus 263 ~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~~~a~~ 326 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLELHMARF 326 (835)
T ss_pred hhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHHHHHHH
Confidence 777777777776543 234445566666665433322222111 0101111110 001223333334
Q ss_pred hcCCCC---------------CeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHH
Q 044131 269 RDIVRP---------------DLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCI 333 (784)
Q Consensus 269 ~~~~~~---------------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 333 (784)
+.+..+ ++..|..-+. ...|+..+-...|.+.... +.|-..
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka--------------------- 382 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKA--------------------- 382 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccC---------------------
Confidence 333221 2223332222 2234444555555554432 222111
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-------hHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 044131 334 HSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSL-------ASWNAMIAGYTQNGLTEEAISLFQEMQAS 406 (784)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 406 (784)
...-...|..+.+.|-..|+++.|+.+|++...-+- ..|..-...=.+..+++.|+++.+.....
T Consensus 383 --------~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 383 --------VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred --------CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 111223556666677777777777777766543221 23444444444556666666665554321
Q ss_pred CC----------CC-------CHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHH
Q 044131 407 KV----------AP-------NPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEAREL 469 (784)
Q Consensus 407 g~----------~p-------d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 469 (784)
-- .| +...|+..+..--..|-++..+.+++.+++..+.....+.| ..-.+-...-++++.++
T Consensus 455 P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~ 533 (835)
T KOG2047|consen 455 PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKA 533 (835)
T ss_pred CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHH
Confidence 10 11 11223333444445667778888888888766543332222 22233445567888888
Q ss_pred HhhcC----CCCHH-HHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HccCCHHHHHHHHHHh
Q 044131 470 FDLMS----HKSEV-TWNTMISGYGLH---GHGLEALQLFSEMLHSGIRPSGVTFLSVLYAC--SHAGLVREGDEIFQSM 539 (784)
Q Consensus 470 f~~~~----~~~~~-~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~--~~~g~~~~a~~~~~~m 539 (784)
+++-. -|++. .||.-+.-+.+. -..+.|..+|++.++ |.+|...-+.-|+.|- ..-|....|.+++++.
T Consensus 534 YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 534 YERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 87654 35554 788777665542 347788888888888 6777665544444432 2347777777777765
Q ss_pred H
Q 044131 540 I 540 (784)
Q Consensus 540 ~ 540 (784)
.
T Consensus 613 t 613 (835)
T KOG2047|consen 613 T 613 (835)
T ss_pred H
Confidence 4
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-08 Score=108.94 Aligned_cols=231 Identities=17% Similarity=0.136 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHhhhCchHHHHHHHHHHHHc-----CC-CCch-hhHhHHHHHHHhcCCHHHHHHHHhhcCC---------
Q 044131 412 PVTVSSILSACAQLGAISLGKWVHELVKSR-----NF-ESNI-YVSTALIDMYAKCGNIVEARELFDLMSH--------- 475 (784)
Q Consensus 412 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----g~-~~~~-~~~~~Li~~y~k~g~~~~A~~~f~~~~~--------- 475 (784)
..|...+...|...|+++.|.++++..++. |. .+.+ ...+.+..+|...+++++|..+|+++..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356666888889999999999888887754 21 1222 2334577789999999999999887752
Q ss_pred -CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCC-CCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcC--
Q 044131 476 -KS-EVTWNTMISGYGLHGHGLEALQLFSEMLH-----SGIR-PSGV-TFLSVLYACSHAGLVREGDEIFQSMIHDHG-- 544 (784)
Q Consensus 476 -~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 544 (784)
|. ..+++.|...|...|++++|..++++..+ .|.. |... -++.+...|.+.+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 22 34788888889999999998888887654 1222 2222 366677789999999999999998876654
Q ss_pred CCCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc-
Q 044131 545 FKPL----AEHYACMVDILGRAGQLEKALEFIKGLA---------VEPG-PAVWGALLGACMIHKDTNLARVASEKLFE- 609 (784)
Q Consensus 545 ~~p~----~~~~~~lv~~l~r~g~~~eA~~~~~~m~---------~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~- 609 (784)
+.++ ..+++.|..+|-..|+++||++++++.- ..+. ....+.|..+|...++.+.|.+.+++...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 4679999999999999999999998761 1232 44677888999999999989988887664
Q ss_pred ---CCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 610 ---LDPEN---VGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 610 ---l~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
..|++ ...|..|+-+|.+.|++++|.++-....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34444 4578889999999999999999987654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.3e-07 Score=92.23 Aligned_cols=274 Identities=11% Similarity=0.018 Sum_probs=202.6
Q ss_pred HHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHH---HHHHHhCCChhHHHHHHHHHHhCCCCCCHHH
Q 044131 338 LKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAM---IAGYTQNGLTEEAISLFQEMQASKVAPNPVT 414 (784)
Q Consensus 338 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 414 (784)
.+.-++.|+....++.+.|...|+.++|...|++...-|+.+...| .-.+.+.|+.+....+...+.... +-....
T Consensus 224 ~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~ 302 (564)
T KOG1174|consen 224 DNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASH 302 (564)
T ss_pred hhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhh
Confidence 3456788999999999999999999999999998766555443333 233567888888888877776532 112222
Q ss_pred HHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC--C-CCHHHHHHHHHHHHHc
Q 044131 415 VSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS--H-KSEVTWNTMISGYGLH 491 (784)
Q Consensus 415 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~ 491 (784)
|..-+...-...+++.|..+-+..++.. +.+...+-.-...+...|+.++|.-.|.... . -+..+|..|+..|...
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhh
Confidence 2222233345567777777777777654 2333334333456778899999999998765 3 4788999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHc-cCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHH
Q 044131 492 GHGLEALQLFSEMLHSGIRPSGVTFLSVL-YACSH-AGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKA 568 (784)
Q Consensus 492 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll-~a~~~-~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA 568 (784)
|+..||.-+-+..... ++.+..+.+.+. ..|.- ...-++|.+++++-. .+.|+ ....+.+..++.+.|+.+++
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchH
Confidence 9999999888766553 344555555442 33332 334678999998766 67888 56777888999999999999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcch
Q 044131 569 LEFIKGL-AVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGY 617 (784)
Q Consensus 569 ~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~ 617 (784)
..++++. ...||....+.|....+..+.+..|...|..++.++|++-..
T Consensus 458 i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 458 IKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 9999886 478999999999999999999999999999999999997543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-07 Score=99.16 Aligned_cols=165 Identities=15% Similarity=0.100 Sum_probs=81.7
Q ss_pred HhcCCCchHHHHHHHHHHH-------hCC-CCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCC
Q 044131 118 ASACCDRSIGVLLHGHAIV-------SGY-GSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCC 189 (784)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~-------~g~-~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 189 (784)
++..|++..++.+|+-..- .|- ..|-+-..+++.+..| .+.+|+.+|-+-. + -..-|..|....+
T Consensus 500 faai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~k--kfk~ae~ifleqn--~---te~aigmy~~lhk 572 (1636)
T KOG3616|consen 500 FAAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFLEQN--A---TEEAIGMYQELHK 572 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHHhcc--c---HHHHHHHHHHHHh
Confidence 3445566666666654431 222 2333444555555543 5777887775421 1 1234566666667
Q ss_pred chHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 044131 190 FQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFR 269 (784)
Q Consensus 190 ~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 269 (784)
+++|+.+-+.. |.+.=...-.+-+.++...|+-+.|-++ ..+.--.-+-|..|.|.|.+-.|.+.-.
T Consensus 573 wde~i~lae~~----~~p~~eklk~sy~q~l~dt~qd~ka~el---------k~sdgd~laaiqlyika~~p~~a~~~a~ 639 (1636)
T KOG3616|consen 573 WDEAIALAEAK----GHPALEKLKRSYLQALMDTGQDEKAAEL---------KESDGDGLAAIQLYIKAGKPAKAARAAL 639 (1636)
T ss_pred HHHHHHHHHhc----CChHHHHHHHHHHHHHHhcCchhhhhhh---------ccccCccHHHHHHHHHcCCchHHHHhhc
Confidence 77777665432 2211111223334444444444433322 1122223455677777777776665432
Q ss_pred c--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHH
Q 044131 270 D--IVRPDLISCNAMISGYTCNGKTESSLRLFRQL 302 (784)
Q Consensus 270 ~--~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 302 (784)
. ....|......+..++.+...+++|-.+|+++
T Consensus 640 n~~~l~~de~il~~ia~alik~elydkagdlfeki 674 (1636)
T KOG3616|consen 640 NDEELLADEEILEHIAAALIKGELYDKAGDLFEKI 674 (1636)
T ss_pred CHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHh
Confidence 1 12234444444555555555566666666555
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-05 Score=88.52 Aligned_cols=154 Identities=15% Similarity=0.162 Sum_probs=125.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHH
Q 044131 477 SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMV 556 (784)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv 556 (784)
....|..+..+-.+.|...+|++-|-+. -|+..|..++.++++.|.+++-..++....++ .-+|.++ +.|+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHH
Confidence 3457999999999999999999887643 46778999999999999999999999877644 5566654 5689
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 044131 557 DILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAAT 636 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 636 (784)
-+|++.+++.|-++++. .||..-......-|...|.++.|+.+|.. .+.|..|+..+...|.+..|..
T Consensus 1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999885 68888888999999999999999988865 4678889999999999998887
Q ss_pred HHHHHHhCCCccCCc
Q 044131 637 VRQVVKKRKLAKAPG 651 (784)
Q Consensus 637 ~~~~m~~~~~~k~~g 651 (784)
--++......-|+.+
T Consensus 1242 ~aRKAns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1242 AARKANSTKTWKEVC 1256 (1666)
T ss_pred HhhhccchhHHHHHH
Confidence 766554433333333
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-08 Score=113.89 Aligned_cols=243 Identities=14% Similarity=0.048 Sum_probs=178.9
Q ss_pred ChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHh---------hhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcC
Q 044131 392 LTEEAISLFQEMQASKVAPNPV-TVSSILSACA---------QLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCG 461 (784)
Q Consensus 392 ~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~---------~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g 461 (784)
..++|+.+|++.... .|+.. .+..+..++. ..++.++|...++.+++.. +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 457888889888764 56543 3433333332 2244788999999988875 557788888889999999
Q ss_pred CHHHHHHHHhhcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHH
Q 044131 462 NIVEARELFDLMS--HK-SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGV-TFLSVLYACSHAGLVREGDEIFQ 537 (784)
Q Consensus 462 ~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~ 537 (784)
++++|...|++.. .| +...|..+...+...|++++|+..+++..+. .|+.. .+..++.++...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999876 34 4668888999999999999999999999984 55533 33344555667899999999999
Q ss_pred HhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 538 SMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPGPA-VWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 538 ~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
+..+. ..|+ ...+..+...|...|++++|...++++ +..|+.. .++.|...+...| +.+...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 88743 2354 555777888999999999999999886 4556544 4555555666666 47888788877654333
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 615 VGYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 615 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
+.....+..+|+-.|+-+.+..+ +.+.+.
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 33444588899999999988888 555543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.7e-06 Score=86.71 Aligned_cols=522 Identities=10% Similarity=0.104 Sum_probs=304.7
Q ss_pred hhHHHHHhccCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHH-hhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHH
Q 044131 57 TCYARALFFSIPKPDLFLFNVIIRGFSNNEMPKSSICFYTHLR-KNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAI 135 (784)
Q Consensus 57 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m-~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 135 (784)
++.+.....+||. .|-..+.-+.++|+...... .|.+. +..-+.-....|...|+-....+-++.+..++.+-+
T Consensus 91 ~er~lv~mHkmpR----Iwl~Ylq~l~~Q~~iT~tR~-tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL 165 (835)
T KOG2047|consen 91 FERCLVFMHKMPR----IWLDYLQFLIKQGLITRTRR-TFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL 165 (835)
T ss_pred HHHHHHHHhcCCH----HHHHHHHHHHhcchHHHHHH-HHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH
Confidence 4555555666653 57777777778888877777 55543 333444555678888888888888888888888877
Q ss_pred HhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCcc----------cHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 044131 136 VSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTV----------LWNSMISGLMKNCCFQDSIWVFGDMVRNGG 205 (784)
Q Consensus 136 ~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~----------~~~~li~~~~~~g~~~~A~~l~~~m~~~~g 205 (784)
+.. +...+-.|..+++.+++++|.+.+......|.. .|+-+-.-.+++-+.-..+
T Consensus 166 k~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sl----------- 230 (835)
T KOG2047|consen 166 KVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSL----------- 230 (835)
T ss_pred hcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhccc-----------
Confidence 653 233566777788888888888888877654332 2333222222221111100
Q ss_pred CCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCC--CCc--hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCeeeH
Q 044131 206 TWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGF--HDH--VYVLTGLVSFYSKCGEVERAELLFRDIVR--PDLISC 279 (784)
Q Consensus 206 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~d~~~~ 279 (784)
+ .+.+++.|+ -+| -+.|++|.+-|.+.|.++.|+.+|++... -.+.-+
T Consensus 231 -------------------------n-vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDF 284 (835)
T KOG2047|consen 231 -------------------------N-VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDF 284 (835)
T ss_pred -------------------------C-HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhH
Confidence 0 011222222 122 35788999999999999999999987644 334446
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHH--HcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHH-----------hCCCcch
Q 044131 280 NAMISGYTCNGKTESSLRLFRQLL--ASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLK-----------SGIVSNS 346 (784)
Q Consensus 280 ~~li~~~~~~g~~~~A~~l~~~m~--~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~-----------~g~~~~~ 346 (784)
+.+-.+|++-....-+..+ ++. ..|-+-+...+. ....-++.+.. ..-+.++
T Consensus 285 t~ifd~Ya~FEE~~~~~~m--e~a~~~~~n~ed~~dl~-------------~~~a~~e~lm~rr~~~lNsVlLRQn~~nV 349 (835)
T KOG2047|consen 285 TQIFDAYAQFEESCVAAKM--ELADEESGNEEDDVDLE-------------LHMARFESLMNRRPLLLNSVLLRQNPHNV 349 (835)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhhhhcccChhhhhhHH-------------HHHHHHHHHHhccchHHHHHHHhcCCccH
Confidence 6666666543211111100 010 011111111111 11111111111 1112333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhh-------cCCC--ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC---HHH
Q 044131 347 SVLTALSTVYSRLNEMEAARKLFDE-------SSEK--SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN---PVT 414 (784)
Q Consensus 347 ~~~~~Li~~y~~~g~~~~A~~~f~~-------~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t 414 (784)
..|..-+..| .|+..+-...|.+ .... -...|..+..-|-.+|+.+.|..+|.+...-..+-- ..+
T Consensus 350 ~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~v 427 (835)
T KOG2047|consen 350 EEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEV 427 (835)
T ss_pred HHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHH
Confidence 4444444333 2334444444433 2221 123699999999999999999999999876433221 123
Q ss_pred HHHHHHHHhhhCchHHHHHHHHHHHHc-----------CCCC------chhhHhHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 044131 415 VSSILSACAQLGAISLGKWVHELVKSR-----------NFES------NIYVSTALIDMYAKCGNIVEARELFDLMSHKS 477 (784)
Q Consensus 415 ~~~ll~a~~~~~~~~~a~~i~~~~~~~-----------g~~~------~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~ 477 (784)
|......=.+..+++.|..+.+.+... +.++ +..+|+.++|.--.+|-++....+++++.+--
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 333333333456777777777665421 1111 23456666777778899999999999887422
Q ss_pred HHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCc-
Q 044131 478 EVTWNTM---ISGYGLHGHGLEALQLFSEMLHSGIRPSGV----TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLA- 549 (784)
Q Consensus 478 ~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~- 549 (784)
+.|=..+ ..-+-.|..++++.++|++-+..=-.|+.. ||....-.=...-.++.|+.+|++.++ +.+|..
T Consensus 508 iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~a 585 (835)
T KOG2047|consen 508 IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHA 585 (835)
T ss_pred cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHH
Confidence 2211111 112345777899999998877654455553 343333332234479999999999986 666652
Q ss_pred -chHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCH--HHHHHHHHHHH-hcCCHHHHHHHHHHHhcCCCCCcch--HHHH
Q 044131 550 -EHYACMVDILGRAGQLEKALEFIKGLA--VEPGP--AVWGALLGACM-IHKDTNLARVASEKLFELDPENVGY--HVLL 621 (784)
Q Consensus 550 -~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~--~~~~~ll~a~~-~~g~~~~a~~~~~~~~~l~p~~~~~--~~~l 621 (784)
..|-....+=-+.|....|+.++++.. +++.. ..|+..+.-.. ..| +.....+|+++++.-|++-.- -.-.
T Consensus 586 KtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~~~~r~mclrF 664 (835)
T KOG2047|consen 586 KTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPDSKAREMCLRF 664 (835)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCChHHHHHHHHHH
Confidence 233333444457789999999999974 44432 27877776333 333 445678899999988876543 3446
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 044131 622 SNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 622 ~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
+.+-.+.|..+.|..++..-.+-
T Consensus 665 AdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 665 ADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHhhhhhhHHHHHHHHHhhhhc
Confidence 88888999999999998766553
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.8e-07 Score=87.38 Aligned_cols=446 Identities=13% Similarity=0.052 Sum_probs=228.7
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHH
Q 044131 119 SACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPE---KDTVLWNSMISGLMKNCCFQDSIW 195 (784)
Q Consensus 119 ~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 195 (784)
....|+..|..+++.-...+-+....+--=+...|.+.|++++|..++.-+.+ ++...|-.|.-++.--|.+.+|..
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 34455666666655544332211111212223345567888888877766553 345556666666666677777766
Q ss_pred HHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--
Q 044131 196 VFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR-- 273 (784)
Q Consensus 196 l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-- 273 (784)
+-... .-++-.-..++...-+.++-+.-.++|+.+.. ...-.-+|.++.-..-.+.+|..++.++..
T Consensus 113 ~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 113 IAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 64432 12233334455555566776666666665532 223344555555555578888888888754
Q ss_pred CCeeeHHH-HHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCC--CChhHHHHHHHHHHHhCCCcchHHHH
Q 044131 274 PDLISCNA-MISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPF--GHLHLTNCIHSFCLKSGIVSNSSVLT 350 (784)
Q Consensus 274 ~d~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~i~~~~~~~g~~~~~~~~~ 350 (784)
|+-...|. |.-.|.+...++-+.++++--++. -||+ |+..=+.+|... =+-..+.+-...+.+.+-..-++.--
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~ 258 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEY 258 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHH
Confidence 44455554 344677778888887777776654 2332 333334444321 11112222222222221111000000
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-----hh
Q 044131 351 ALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACA-----QL 425 (784)
Q Consensus 351 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~-----~~ 425 (784)
.+=+-..-...-+.|.+++-.+...=+.+--.|+--|.+.++..+|..+.+++.. ..|-.+..-.+..+-. ..
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSr 336 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSR 336 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcH
Confidence 0000000011223344443332221122233345557777888888777766532 2333333222222111 11
Q ss_pred CchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044131 426 GAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEML 505 (784)
Q Consensus 426 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (784)
..+.-|.+.+..+-.++...|... --.+|.+.+--..++++.+-++....
T Consensus 337 eHlKiAqqffqlVG~Sa~ecDTIp------------------------------GRQsmAs~fFL~~qFddVl~YlnSi~ 386 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESALECDTIP------------------------------GRQSMASYFFLSFQFDDVLTYLNSIE 386 (557)
T ss_pred HHHHHHHHHHHHhccccccccccc------------------------------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123334444444444433333221 22334444444455666666665555
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHH-HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH
Q 044131 506 HSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYA-CMVDILGRAGQLEKALEFIKGLAVEPGPAVW 584 (784)
Q Consensus 506 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~ 584 (784)
.- +..|.+--..+..|.+..|.+.+|.++|-.+... .++ +..+|. .+...|.+.++.+-|++++-++.-+.+..+.
T Consensus 387 sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsL 463 (557)
T KOG3785|consen 387 SY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSL 463 (557)
T ss_pred HH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHH
Confidence 43 2233333335667777788888888887766411 222 233443 4556778888888888888777644444444
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 585 GAL-LGACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 585 ~~l-l~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
-.| ..-|.+.+.+--|-.++..+-.++|.
T Consensus 464 LqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 464 LQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 443 45788888888888888888888886
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-07 Score=93.88 Aligned_cols=290 Identities=12% Similarity=0.020 Sum_probs=194.2
Q ss_pred CCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 044131 187 NCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAEL 266 (784)
Q Consensus 187 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 266 (784)
.|++.+|..+..+-.+. +-.| ...|.....+.-..|+.+.+-.++..+.+.--.++..+.-+........|+.+.|+.
T Consensus 97 eG~~~qAEkl~~rnae~-~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH-GEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhc-Ccch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 45555555555554333 2111 123344444555566666666666666665445666677777777788888888877
Q ss_pred HHhcC---CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCC
Q 044131 267 LFRDI---VRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIV 343 (784)
Q Consensus 267 ~f~~~---~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~ 343 (784)
-.+++ ..++..........|.+.|++.+.+.+...|.+.|+--|+..- .
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~----------------------------~ 226 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA----------------------------R 226 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH----------------------------H
Confidence 66554 4466777888888999999999999999999888765443210 0
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044131 344 SNSSVLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILS 420 (784)
Q Consensus 344 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 420 (784)
....+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+..+ +-
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~ 302 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LI 302 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HH
Confidence 1123445555555555555555566666663 2566667778888899999999999999888877777222 23
Q ss_pred HHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCCHHHHH
Q 044131 421 ACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS--HKSEVTWNTMISGYGLHGHGLEAL 498 (784)
Q Consensus 421 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 498 (784)
.+.+.++.+.-.+..+...+.. +.++..+.+|...|.|.+.+.+|...|+... .++..+|+-+..+|.+.|+..+|.
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 4556666666666666655442 4455778888888888888888888888665 578888888888888888888888
Q ss_pred HHHHHHHHCCCCC
Q 044131 499 QLFSEMLHSGIRP 511 (784)
Q Consensus 499 ~~~~~m~~~g~~p 511 (784)
+.+++....-.+|
T Consensus 382 ~~r~e~L~~~~~~ 394 (400)
T COG3071 382 QVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHhcCC
Confidence 8887766433333
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-07 Score=92.33 Aligned_cols=286 Identities=13% Similarity=0.092 Sum_probs=167.8
Q ss_pred CCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCChHH
Q 044131 187 NCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHD---HVYVLTGLVSFYSKCGEVER 263 (784)
Q Consensus 187 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~ 263 (784)
+.++++|+++|-+|.+. -+-+..+-.++-+.+.+.|..+.|..+|..++++---+ -....-.|..=|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 46889999999999864 22223344567777888899999999999887642111 12344566777899999999
Q ss_pred HHHHHhcCCCCCee---eHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhh----HHhHHHhhcCCCChhHHHHHHHH
Q 044131 264 AELLFRDIVRPDLI---SCNAMISGYTCNGKTESSLRLFRQLLASAERVNSST----IVGLIPVFYPFGHLHLTNCIHSF 336 (784)
Q Consensus 264 A~~~f~~~~~~d~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~i~~~ 336 (784)
|+.+|..+.+.+.. ..-.|+..|-+..+|++|++.-+++...+-++..+- |.-+........+.+.|...+..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999988774444 345578899999999999999999888765554332 22223333333444444444444
Q ss_pred HHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 044131 337 CLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVS 416 (784)
Q Consensus 337 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 416 (784)
..+.. +..+...-.+. ..+...|+++.|.+.++...+.+..--+.+..
T Consensus 206 Alqa~-~~cvRAsi~lG-------------------------------~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 206 ALQAD-KKCVRASIILG-------------------------------RVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred HHhhC-ccceehhhhhh-------------------------------HHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 43332 11222222333 34455555555555555555543333334445
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhh-cC-CCCHHHHHHHHHHHH---Hc
Q 044131 417 SILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDL-MS-HKSEVTWNTMISGYG---LH 491 (784)
Q Consensus 417 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~-~~-~~~~~~~~~li~~~~---~~ 491 (784)
.+..+|..+|+.+.+...+..+.+....+ ..-..+.+.-....-.+.|.....+ +. +|+...+..+|.... .-
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGA--DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCc--cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccc
Confidence 55555666666666665555555443222 2222333333333334444444333 22 566666666666543 23
Q ss_pred CCHHHHHHHHHHHHHCC
Q 044131 492 GHGLEALQLFSEMLHSG 508 (784)
Q Consensus 492 g~~~~A~~~~~~m~~~g 508 (784)
|...+-+.+++.|..+.
T Consensus 332 g~~k~sL~~lr~mvge~ 348 (389)
T COG2956 332 GRAKESLDLLRDMVGEQ 348 (389)
T ss_pred cchhhhHHHHHHHHHHH
Confidence 55677777888887643
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.5e-07 Score=95.92 Aligned_cols=268 Identities=14% Similarity=0.119 Sum_probs=161.8
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCee---eHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHH
Q 044131 242 HDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLI---SCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLI 318 (784)
Q Consensus 242 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 318 (784)
.-++.+.....+-+..++++.+..++++.+.+.|+. .+..-|..+...|+..+-..+=.+|.+.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~------------- 307 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL------------- 307 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-------------
Confidence 334444444555555556666666666555443322 2333344555555554444444444332
Q ss_pred HhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCCChhH
Q 044131 319 PVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKS---LASWNAMIAGYTQNGLTEE 395 (784)
Q Consensus 319 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~ 395 (784)
.+..+.+|-++.--|.-.|..++|++.|.+...-| ...|-.....|+-.|..++
T Consensus 308 -----------------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQ 364 (611)
T KOG1173|consen 308 -----------------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQ 364 (611)
T ss_pred -----------------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHH
Confidence 35566777777777888899999999998755433 3589999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC
Q 044131 396 AISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH 475 (784)
Q Consensus 396 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~ 475 (784)
|+..+...-+. ++-...-+.-+---|.+.++++.|.+++.++.... +.|+.+.+-+.-+....+.+.+|...|+....
T Consensus 365 AmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~ 442 (611)
T KOG1173|consen 365 AMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALE 442 (611)
T ss_pred HHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHH
Confidence 99888776543 11111112223334677888888888888887653 66777887777777777788888887776541
Q ss_pred ------C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC
Q 044131 476 ------K----SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGF 545 (784)
Q Consensus 476 ------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 545 (784)
+ -..+|+.|..+|.+.+.+++|+..|++.+.. .+-|..|+.++.-.+...|+++.|.+.|.+.+ .+
T Consensus 443 ~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l 518 (611)
T KOG1173|consen 443 VIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL---AL 518 (611)
T ss_pred HhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hc
Confidence 0 1123455555556666666666666655553 13344555555555555555555555555544 44
Q ss_pred CCCcch
Q 044131 546 KPLAEH 551 (784)
Q Consensus 546 ~p~~~~ 551 (784)
.|+-..
T Consensus 519 ~p~n~~ 524 (611)
T KOG1173|consen 519 KPDNIF 524 (611)
T ss_pred CCccHH
Confidence 555433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.8e-07 Score=101.17 Aligned_cols=552 Identities=13% Similarity=0.013 Sum_probs=263.9
Q ss_pred chhHHHHHHHHHHhCCCCC-hhhHhHHHHHhhCCCChhHHHHHhccC---CCCCcchHHHHHHHHhcCCCchhHHHHHHH
Q 044131 22 QSQLTQTHAQIIIHGFQND-LSTVTKLAHRLSDFKATCYARALFFSI---PKPDLFLFNVIIRGFSNNEMPKSSICFYTH 97 (784)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 97 (784)
-.....+|+.+....+.++ ...|..|-.-|...-+...|.+.|+.. ..-+..+|-....-|++..+++.|+.+.+.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 3456678888877777666 456888888888877888899988864 456777889999999999999999983222
Q ss_pred HHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCcccH
Q 044131 98 LRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLW 177 (784)
Q Consensus 98 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~ 177 (784)
.-.......-..-|..+--.+...++...+..-++...+.. +.|...|..|..+|.++|+...|.++|++...-++.+|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 22221111111122222222334455555555555555554 44677888888888888888888888877765444433
Q ss_pred HHH---HHHHHcCCCchHHHHHHHHHHHcC-----CCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHH
Q 044131 178 NSM---ISGLMKNCCFQDSIWVFGDMVRNG-----GTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLT 249 (784)
Q Consensus 178 ~~l---i~~~~~~g~~~~A~~l~~~m~~~~-----g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 249 (784)
-.- ...-+.+|.+.+|++.+....... +..--..++......+...|-...+..+++..++. ..+
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~-------f~~ 703 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES-------FIV 703 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-------HHH
Confidence 221 123355788888888777665430 00000011111111111111112222222211110 011
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCCh--
Q 044131 250 GLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHL-- 327 (784)
Q Consensus 250 ~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-- 327 (784)
+++... ..|...|-.+- .|..+|-+.... .|+......+..-.-..+..
T Consensus 704 ~l~h~~-----------------~~~~~~Wi~as----------dac~~f~q~e~~--~vn~h~l~il~~q~e~~~~l~~ 754 (1238)
T KOG1127|consen 704 SLIHSL-----------------QSDRLQWIVAS----------DACYIFSQEEPS--IVNMHYLIILSKQLEKTGALKK 754 (1238)
T ss_pred HHHHhh-----------------hhhHHHHHHHh----------HHHHHHHHhccc--chHHHHHHHHHHHHHhcccCcc
Confidence 111110 01111222111 112222222100 11211111111111111111
Q ss_pred -h---HHHHHHHHHHHhCCCcchHHHHHHHHHHHh----cC----CHHHHHHHHhhc---CCCChhHHHHHHHHHHhCCC
Q 044131 328 -H---LTNCIHSFCLKSGIVSNSSVLTALSTVYSR----LN----EMEAARKLFDES---SEKSLASWNAMIAGYTQNGL 392 (784)
Q Consensus 328 -~---~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~----~g----~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~ 392 (784)
+ .|-+.+.. ...+..+...|..|..-|.+ +| +...|...+..- ...+...||.|--. ...|.
T Consensus 755 ~d~l~Lg~~c~~~--hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gn 831 (1238)
T KOG1127|consen 755 NDLLFLGYECGIA--HLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGN 831 (1238)
T ss_pred hhHHHHHHHHhhH--HHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccch
Confidence 1 00000000 00111122233333322222 22 123444444432 23456667766544 44455
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhh
Q 044131 393 TEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDL 472 (784)
Q Consensus 393 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 472 (784)
+.-|..-|-+-... .+.+..+|..+--.|....+++.|.+.+....... +.+...+-...-.--..|+.-++..+|..
T Consensus 832 va~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 832 VACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 55555555444332 13345566666666666677777777776666442 22333232222223345666666666654
Q ss_pred c-----C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 044131 473 M-----S---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLH---------SGIRPSGVTFLSVLYACSHAGLVREGDEI 535 (784)
Q Consensus 473 ~-----~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 535 (784)
- . -++..-|-....-..++|+.++-+..-++.-. .|.+-+...|....+...|.+..+++.+.
T Consensus 910 s~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~el 989 (1238)
T KOG1127|consen 910 SDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALEL 989 (1238)
T ss_pred hHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHH
Confidence 1 1 14455555555555566665554443333221 12334455666666666777766666666
Q ss_pred HHHhHHhcCCCCCcchHHH----HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 044131 536 FQSMIHDHGFKPLAEHYAC----MVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELD 611 (784)
Q Consensus 536 ~~~m~~~~~~~p~~~~~~~----lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~ 611 (784)
..+...-...+-+...|+. ...++...|.++.|..-+...+..-+..+-++-++. ...++++.+...+++++.+.
T Consensus 990 a~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis 1068 (1238)
T KOG1127|consen 990 ATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSIS 1068 (1238)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhc
Confidence 5554321112223334442 233444556666665555444434343333333333 34566777777777776655
Q ss_pred CCCcc
Q 044131 612 PENVG 616 (784)
Q Consensus 612 p~~~~ 616 (784)
-++..
T Consensus 1069 ~se~d 1073 (1238)
T KOG1127|consen 1069 NSESD 1073 (1238)
T ss_pred ccccc
Confidence 44433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-07 Score=101.42 Aligned_cols=237 Identities=16% Similarity=0.169 Sum_probs=148.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCCC----------Chh-HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH
Q 044131 345 NSSVLTALSTVYSRLNEMEAARKLFDESSEK----------SLA-SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPV 413 (784)
Q Consensus 345 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 413 (784)
-..+...|..+|...|+++.|..+|+...+. .+. .-+.+...|...+++++|..+|.++..-
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i------- 270 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI------- 270 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------
Confidence 3445555777777777777777777643211 111 1222334455555555555555554321
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC----------CCCHH-HHH
Q 044131 414 TVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS----------HKSEV-TWN 482 (784)
Q Consensus 414 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~----------~~~~~-~~~ 482 (784)
.....-...+.-..+++.|...|.+.|++++|...++... .+.+. ..+
T Consensus 271 ---------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 271 ---------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred ---------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 0000000001112334445556777777776666555433 12333 455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhHHhc-----CCCCC-c
Q 044131 483 TMISGYGLHGHGLEALQLFSEMLHS---GIRPSG----VTFLSVLYACSHAGLVREGDEIFQSMIHDH-----GFKPL-A 549 (784)
Q Consensus 483 ~li~~~~~~g~~~~A~~~~~~m~~~---g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~ 549 (784)
.++..+...+++++|..++++..+. -+.++. -++..+...+.+.|++++|.++|++.++.. +..+. -
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 5666777888888888888866542 133343 368888889999999999999999886543 11222 4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 044131 550 EHYACMVDILGRAGQLEKALEFIKGL--------AVEPGPA-VWGALLGACMIHKDTNLARVASEKLFE 609 (784)
Q Consensus 550 ~~~~~lv~~l~r~g~~~eA~~~~~~m--------~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~ 609 (784)
.+++.|...|.+.++.++|.++|.+. |-.|+.. +|..|..+|+..|+++.|+++.+++..
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 56788888899999999888888764 2445544 899999999999999999999998873
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-08 Score=98.52 Aligned_cols=227 Identities=18% Similarity=0.151 Sum_probs=169.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhc
Q 044131 381 NAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKC 460 (784)
Q Consensus 381 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~ 460 (784)
+-|..+|.+.|.+.+|.+.|+.-... .|-..||..+-.+|-+..+++.|..++..-.+. ++.|+.........+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667788888888888888777765 455556666777777777777777777776654 345555555566667777
Q ss_pred CCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 044131 461 GNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQ 537 (784)
Q Consensus 461 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 537 (784)
++.++|.++++...+ .++.+..++..+|.-.++.+-|+.+|+++++.|+ -+...|+.+.-.|...+.+|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777777777776653 3455566666677777888888888888888774 355667777777777777777777666
Q ss_pred HhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 538 SMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPG--PAVWGALLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 538 ~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
+.... | -.|+ ..+|..|.......||+..|.+.++-++..+|++.
T Consensus 383 RAlst--------------------------------a-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 383 RALST--------------------------------A-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHHhh--------------------------------c-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 65421 1 1233 34788888888889999999999999999999999
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 616 GYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 616 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
..++.|+-+-.+.|+.++|..+....++.
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99999999999999999999999877653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-06 Score=94.61 Aligned_cols=446 Identities=16% Similarity=0.070 Sum_probs=226.6
Q ss_pred hCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhH
Q 044131 137 SGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPE---KDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSV 213 (784)
Q Consensus 137 ~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~ 213 (784)
..+.-|..+|..|.-+..++|+++.+-+.|++... .....|+.+-..|+-.|.-..|+.+.+.-.....-++|...+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34667899999999999999999999999998763 345679999999999999999999998876441223344455
Q ss_pred HhHHHHHhc-ccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----CCCeeeHHHHHHHHHh
Q 044131 214 AAVLPAVAE-VQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIV----RPDLISCNAMISGYTC 288 (784)
Q Consensus 214 ~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~~ 288 (784)
..+-+.|.. .+..++|..+-.+++... -.+++++...-..|..+. .....+|.- +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~--------------~~~~~~l~~~~~l~lGi~y~~~A~~a~~~se------R 456 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLL--------------GGQRSHLKPRGYLFLGIAYGFQARQANLKSE------R 456 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHh--------------hhhhhhhhhhHHHHHHHHHHhHhhcCCChHH------H
Confidence 555555643 456666666655555421 112222222222222110 001111110 1
Q ss_pred CCCchHHHHHHHHHHHcC-CCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHH
Q 044131 289 NGKTESSLRLFRQLLASA-ERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARK 367 (784)
Q Consensus 289 ~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 367 (784)
.....++++.+++..+.+ -.|+..-|.++- ++-.++++.|.+.....++.+-..+...|..|.-.+...+++.+|..
T Consensus 457 ~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 457 DALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 112345666666665543 234444343332 23345566666666666666555566666666666666666666666
Q ss_pred HHhhcCCCChhHHHHH---HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCC
Q 044131 368 LFDESSEKSLASWNAM---IAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFE 444 (784)
Q Consensus 368 ~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 444 (784)
+.+...+.-..-++.| |..-..-++.++|+.....+..- --+...+...+. .|....-+.-...... ...
T Consensus 535 vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q~~~~----~g~~~~lk~~l~la~~-q~~ 607 (799)
T KOG4162|consen 535 VVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQQTLD----EGKLLRLKAGLHLALS-QPT 607 (799)
T ss_pred HHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHhhhhh----hhhhhhhhcccccCcc-ccc
Confidence 5554322111111111 11111234455555544444321 000000000000 0000000000000000 000
Q ss_pred CchhhHhHHHHHHH---hcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044131 445 SNIYVSTALIDMYA---KCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLY 521 (784)
Q Consensus 445 ~~~~~~~~Li~~y~---k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 521 (784)
..+.++..+..... +.-..+.....+...+.|+. +|... ...+.....
T Consensus 608 ~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~-~~~~~----------------------------~~lwllaa~ 658 (799)
T KOG4162|consen 608 DAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDS-LWYLL----------------------------QKLWLLAAD 658 (799)
T ss_pred ccchhhHHHHHHHHhhhhhcccccccCcccccCCCCc-hHHHH----------------------------HHHHHHHHH
Confidence 01111111111111 10011111111111111221 11111 112334445
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHH
Q 044131 522 ACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPGPA-VWGALLGACMIHKDTN 598 (784)
Q Consensus 522 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~ 598 (784)
.+...+..+++...+.+.. ++.|. ...|.-....+...|.++||.+.|... .+.|+.+ +..+|...+...|+..
T Consensus 659 ~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~ 735 (799)
T KOG4162|consen 659 LFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPR 735 (799)
T ss_pred HHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcc
Confidence 5666666666666555543 34443 445555556777777888887777654 4666543 7777777777777777
Q ss_pred HHHH--HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 599 LARV--ASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 599 ~a~~--~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.|+. +...+++++|.++..|..|+.++.+.|+.++|.+-|..--+
T Consensus 736 la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 736 LAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 7777 77888888888888888888888888888888887765543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.2e-08 Score=111.10 Aligned_cols=210 Identities=12% Similarity=0.036 Sum_probs=162.7
Q ss_pred CchHHHHHHHHHHHHcCCCCchhhHhHHHHHHH---------hcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCC
Q 044131 426 GAISLGKWVHELVKSRNFESNIYVSTALIDMYA---------KCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGH 493 (784)
Q Consensus 426 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~---------k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 493 (784)
+++++|.+.++++++.. +.+...+..+...|. ..+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 35678899999988764 334556666665554 23458899999998763 467789999889999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCc-chHHHHHHHHHhcCCHHHHHHH
Q 044131 494 GLEALQLFSEMLHSGIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLA-EHYACMVDILGRAGQLEKALEF 571 (784)
Q Consensus 494 ~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~lv~~l~r~g~~~eA~~~ 571 (784)
+++|+..|++..+. .|+ ...+..+..++...|+.++|...++... .+.|+. ..+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999985 455 5567788889999999999999999987 446663 2333445556778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 572 IKGLA--VEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 572 ~~~m~--~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+++.. ..|+ +..+..+..++...|+.++|...++++....|++......|+..|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 98763 2454 4456777778888999999999999999899988888888888888888 477776665554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.1e-06 Score=87.78 Aligned_cols=363 Identities=13% Similarity=0.140 Sum_probs=207.8
Q ss_pred HhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC-ChhhHHhHHHhhcCCCChhHHHHHH
Q 044131 256 SKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERV-NSSTIVGLIPVFYPFGHLHLTNCIH 334 (784)
Q Consensus 256 ~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~i~ 334 (784)
.+.+.+|+|...++.....|..+...-...+.+.|++++|+.+|+.+.+.+..- |...-..++.+-.... +
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~----~---- 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ----V---- 161 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh----H----
Confidence 456778888888875555554455555566777888888888888886654322 1112222222111110 0
Q ss_pred HHHHHhCCCc--chHHHHHHHHHHHhcCCHHHHHHHHhhc--------CCCC-----hh-----HHHHHHHHHHhCCChh
Q 044131 335 SFCLKSGIVS--NSSVLTALSTVYSRLNEMEAARKLFDES--------SEKS-----LA-----SWNAMIAGYTQNGLTE 394 (784)
Q Consensus 335 ~~~~~~g~~~--~~~~~~~Li~~y~~~g~~~~A~~~f~~~--------~~~~-----~~-----~~~~li~~~~~~g~~~ 394 (784)
..+......| +-..+-...-.+...|++.+|+++++.. .+.| .. .---|.-.+...|+.+
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 0111111111 2222222344566788888888888765 1111 11 1122334566789999
Q ss_pred HHHHHHHHHHhCCCCCCHHHH----HHHHHHHhhhCchHH--------------HHHHHHHHHHcCCCCchhhHhHHHHH
Q 044131 395 EAISLFQEMQASKVAPNPVTV----SSILSACAQLGAISL--------------GKWVHELVKSRNFESNIYVSTALIDM 456 (784)
Q Consensus 395 ~A~~l~~~m~~~g~~pd~~t~----~~ll~a~~~~~~~~~--------------a~~i~~~~~~~g~~~~~~~~~~Li~~ 456 (784)
+|.+++...+... .+|.... +.++ +...-.++-. +......+.. .-.....--++|+.+
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~-~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK-KQKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999998874 4444222 2222 2222111111 0111111111 111123334566766
Q ss_pred HHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHH
Q 044131 457 YAKCGNIVEARELFDLMSH--KSEVTWNTMISGYGL-HGHGLEALQLFSEMLHSGIRPSG--VTFLSVLYACSHAGLVRE 531 (784)
Q Consensus 457 y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~ 531 (784)
|. +..+.++++-...+. |....=+.+..++.. .....+|.+++...-+. .|+. +.....+..-...|+++.
T Consensus 319 ~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 319 FT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred Hh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHH
Confidence 65 455677777777774 333333333333322 23577888888887764 3444 444455566778999999
Q ss_pred HHHHHH--------HhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhc
Q 044131 532 GDEIFQ--------SMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL--------AVEPGP-AVWGALLGACMIH 594 (784)
Q Consensus 532 a~~~~~--------~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m--------~~~p~~-~~~~~ll~a~~~~ 594 (784)
|.+++. .+. .+.-.+.+...++.++.+.+.-+-|.+++.+. +-.+.. .+|.-+...-.++
T Consensus 395 A~~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 999998 443 22334556778889999888766555555432 223222 2344444445678
Q ss_pred CCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 044131 595 KDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATV 637 (784)
Q Consensus 595 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 637 (784)
|+-++|...++++++.+|++....+.+...|+... .+.|..+
T Consensus 472 G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred CchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 99999999999999999999999999999998764 3444444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-06 Score=88.81 Aligned_cols=400 Identities=13% Similarity=-0.002 Sum_probs=214.9
Q ss_pred HHHHhcCCCchhHHHHHHHHHhhCCCCCC-cccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCc-hhHHHHHHHHhhcC
Q 044131 79 IRGFSNNEMPKSSICFYTHLRKNTALTPD-NFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSD-LFVGAALVDLYFKF 156 (784)
Q Consensus 79 i~~~~~~g~~~~a~~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d-~~~~~~li~~y~~~ 156 (784)
-.-|.++|.+++|++ .+..... ..|| +.-|...-.++...|+++...+-....++.. |+ +-.+..-..++-..
T Consensus 122 GN~~f~~kkY~eAIk-yY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIK-YYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhcccHHHHHH-HHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhh
Confidence 345678899999999 8888776 5688 6667777777788899888877776666653 44 23445555666667
Q ss_pred CChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHH---------HHH-cCCCCCChhhHHhHHHHHhcccch
Q 044131 157 SWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGD---------MVR-NGGTWLDSTSVAAVLPAVAEVQEL 226 (784)
Q Consensus 157 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~---------m~~-~~g~~pd~~t~~~ll~a~~~~~~~ 226 (784)
|++++|+.= +|-.++..++..+.-.--+-+++.. |.+ ...+-|......+.+..+...-..
T Consensus 197 g~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 197 GKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP 267 (606)
T ss_pred ccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence 777766531 2333344443332222122222211 111 113445554444444443211000
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-CChHHHHHHHhcC-------CCC---CeeeHHHHHH-------HHHh
Q 044131 227 RLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKC-GEVERAELLFRDI-------VRP---DLISCNAMIS-------GYTC 288 (784)
Q Consensus 227 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g~~~~A~~~f~~~-------~~~---d~~~~~~li~-------~~~~ 288 (784)
. ....+-..|...-..+=..|... ..+..|...+.+- +.. |... .-|.. -+.-
T Consensus 268 ~--------~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~al~~~gtF~fL 338 (606)
T KOG0547|consen 268 L--------FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEALLLRGTFHFL 338 (606)
T ss_pred c--------ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHHHHHhhhhhhh
Confidence 0 00000011111111121222111 1122333222211 111 1111 11111 1233
Q ss_pred CCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHH
Q 044131 289 NGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKL 368 (784)
Q Consensus 289 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 368 (784)
.|+...|.+.|+..+.....++.- |.-+-.++....+.+...+.|....+.. +.|+.+|..-..++.-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 577778888888877664443332 5566666777777777777777776665 44566777777777777778888888
Q ss_pred HhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCC-
Q 044131 369 FDESSEK---SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFE- 444 (784)
Q Consensus 369 f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~- 444 (784)
|++...- ++.+|--+--+.-+.+++++++..|++..+. ++--+..|+.....+...++++.|.+.++..++..-.
T Consensus 417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 8775543 3345555555555667777777888777664 4444566666777777777777777777777654211
Q ss_pred ------CchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044131 445 ------SNIYVSTALIDMYAKCGNIVEARELFDLMSHKS---EVTWNTMISGYGLHGHGLEALQLFSEML 505 (784)
Q Consensus 445 ------~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (784)
+.+.+.-+++-.--+ +++..|..++.+..+-| ...|-.|...-.|.|+.++|+++|++-.
T Consensus 496 ~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 122333333333323 56666666666555332 3355555555666666666666666543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-07 Score=94.19 Aligned_cols=198 Identities=13% Similarity=0.108 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHH
Q 044131 377 LASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDM 456 (784)
Q Consensus 377 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 456 (784)
...+..+...|...|++++|.+.|++..... +.+...+..+...+...|+++.|...+....+.. +.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~----------- 97 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PN----------- 97 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC-----------
Confidence 3456667777777777777777777766532 1223344444445555555555555555554432 22
Q ss_pred HHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHH
Q 044131 457 YAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEI 535 (784)
Q Consensus 457 y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~ 535 (784)
+...+..+...+...|++++|++.|++.......| +...+..+...+...|+.++|...
T Consensus 98 --------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 98 --------------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred --------------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 23344444444555555555555555554422111 222344444455555666666666
Q ss_pred HHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 044131 536 FQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-V-EPGPAVWGALLGACMIHKDTNLARVASEKLFEL 610 (784)
Q Consensus 536 ~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l 610 (784)
|+...+. .|+ ...+..+...+...|++++|.+.+++.. . +++...+..+...+...|+.+.|....+.+.+.
T Consensus 158 ~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 5555432 222 3445555556666666666666655441 1 223444445555556666666666666655444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.8e-08 Score=99.66 Aligned_cols=210 Identities=14% Similarity=0.043 Sum_probs=144.9
Q ss_pred chHHHHHHHHHHHHcC-CCC--chhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044131 427 AISLGKWVHELVKSRN-FES--NIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQL 500 (784)
Q Consensus 427 ~~~~a~~i~~~~~~~g-~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 500 (784)
..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++.. ..+...|+.+...|...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555566666432 222 24557777788999999999999998775 24677899999999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C-C
Q 044131 501 FSEMLHSGIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-A-V 577 (784)
Q Consensus 501 ~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~-~ 577 (784)
|++..+ +.|+ ..++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. . .
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999987 4564 56777788888889999999999998874 3565332222233445677899999998654 2 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-------cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044131 578 EPGPAVWGALLGACMIHKDTNLARVASEKLF-------ELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 578 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~-------~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 645 (784)
.|+...| ..+....|+...+. .++.+. ++.|+.+..|..|+.+|...|++++|...+++..+.+
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~~-~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEET-LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH---HHHHHHccCCCHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333222 12222345554332 333333 4556677889999999999999999999998776533
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-06 Score=93.68 Aligned_cols=397 Identities=12% Similarity=0.050 Sum_probs=206.9
Q ss_pred hCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhh-H
Q 044131 239 LGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR---PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSST-I 314 (784)
Q Consensus 239 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~ 314 (784)
..+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|....|+.+++.-....-.|+..+ +
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34678999999999999999999999999998744 4456799999999999999999999988765543454433 3
Q ss_pred HhHHHhhc-CCCChhHHHHHHHHHHHhC--C--CcchHHHHHHHHHHHhc----C-------CHHHHHHHHhhcCCC---
Q 044131 315 VGLIPVFY-PFGHLHLTNCIHSFCLKSG--I--VSNSSVLTALSTVYSRL----N-------EMEAARKLFDESSEK--- 375 (784)
Q Consensus 315 ~~ll~~~~-~~~~~~~a~~i~~~~~~~g--~--~~~~~~~~~Li~~y~~~----g-------~~~~A~~~f~~~~~~--- 375 (784)
...-+.|. +.+..++|..+-..++... . ...+..+..+.-+|... . ...++...+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33334443 3466666666666655521 1 11222333333333211 0 111222222222111
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHH
Q 044131 376 SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALID 455 (784)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 455 (784)
|..+---+---|+..++.+.|++..++....+-.-+...+..+.-.++..+++..|..+.+.....- +.|-.....-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 1111111111233334444444444444444333334444444444444444444444444433210 000000000011
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHccCCHHHHH
Q 044131 456 MYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-S-GVTFLSVLYACSHAGLVREGD 533 (784)
Q Consensus 456 ~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d-~~t~~~ll~a~~~~g~~~~a~ 533 (784)
.-.+-++.++|......+. ..|... -+..+.|+-...+++...+.-.--.| | ..|+..+..-... ..+.+.
T Consensus 556 i~~~~~~~e~~l~t~~~~L----~~we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~ 628 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKL----ALWEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAG 628 (799)
T ss_pred hhhhcccHHHHHHHHHHHH----HHHHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcc
Confidence 1111233333332222111 011110 01112222223333333332110011 1 1233333322221 111111
Q ss_pred HHHHHhHHhcCCCCCc--------chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 044131 534 EIFQSMIHDHGFKPLA--------EHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVA 603 (784)
Q Consensus 534 ~~~~~m~~~~~~~p~~--------~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~ 603 (784)
|..-.......|.. ..|....+.+.+.+..++|...+.+. .+.| .+.+|.-.....-..|+.++|.+.
T Consensus 629 --se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~a 706 (799)
T KOG4162|consen 629 --SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEA 706 (799)
T ss_pred --cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHH
Confidence 00001222334432 35667888999999999998777665 3444 344676666777789999999999
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH--HHHHHHhCC
Q 044131 604 SEKLFELDPENVGYHVLLSNIYSAERDYLQAAT--VRQVVKKRK 645 (784)
Q Consensus 604 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~--~~~~m~~~~ 645 (784)
|..++.++|+++.....++.+|...|+-.-|.+ +.+.+.+.+
T Consensus 707 f~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 707 FLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 999999999999999999999999998777776 655555433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-07 Score=89.08 Aligned_cols=162 Identities=17% Similarity=0.158 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVD 557 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~ 557 (784)
+...+.-+|.+.|+...|..-+++.++. .|+ ..++..+...|...|..+.|.+.|+... .+.|+ -...|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 4455677888999999999999999884 454 4578888888999999999999999887 56676 678888899
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 044131 558 ILGRAGQLEKALEFIKGLAVEPG----PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQ 633 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 633 (784)
.|+..|++++|...|++..-.|+ +.+|..+.....+.|+.+.|+..+++.++++|+.+.....+++.....|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999988743332 44888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 044131 634 AATVRQVVKKRKL 646 (784)
Q Consensus 634 a~~~~~~m~~~~~ 646 (784)
|...++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998887665
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.1e-07 Score=93.59 Aligned_cols=229 Identities=12% Similarity=0.009 Sum_probs=155.1
Q ss_pred CChhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHH
Q 044131 391 GLTEEAISLFQEMQASK-VAPN--PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEAR 467 (784)
Q Consensus 391 g~~~~A~~l~~~m~~~g-~~pd--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 467 (784)
+..+.++.-+.++.... ..|+ ...+......+...|+.+.|...+..+++.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566677776666432 2222 2345555566777788888888888877764 456788889999999999999999
Q ss_pred HHHhhcCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC
Q 044131 468 ELFDLMSH--K-SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHG 544 (784)
Q Consensus 468 ~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 544 (784)
..|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99988753 3 5678888888999999999999999999884 56543222222334557789999999976543 2
Q ss_pred CCCCcchHHHHHHHHHhcCCHHH--HHHHHHh-CC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-CCc
Q 044131 545 FKPLAEHYACMVDILGRAGQLEK--ALEFIKG-LA----VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDP-ENV 615 (784)
Q Consensus 545 ~~p~~~~~~~lv~~l~r~g~~~e--A~~~~~~-m~----~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p-~~~ 615 (784)
..|+...+ .++..+ .|++.+ +.+.+.+ .. ..| ....|..|..++...|+.+.|...++++++++| +..
T Consensus 195 ~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33433222 333333 444433 3333322 11 122 235899999999999999999999999999997 545
Q ss_pred chHHHHHHHHHh
Q 044131 616 GYHVLLSNIYSA 627 (784)
Q Consensus 616 ~~~~~l~~~y~~ 627 (784)
.+-..+..+...
T Consensus 272 e~~~~~~e~~~~ 283 (296)
T PRK11189 272 EHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHH
Confidence 554455544333
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.4e-05 Score=80.96 Aligned_cols=417 Identities=12% Similarity=0.073 Sum_probs=200.3
Q ss_pred HhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHH--HHHHhh--cCC
Q 044131 82 FSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAA--LVDLYF--KFS 157 (784)
Q Consensus 82 ~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~--li~~y~--~~g 157 (784)
+..+|++++|+. ....+...+ +-|...+..=+-+..+.+.++.|..+ +.+.+. ..+.+. +=.+|+ +.+
T Consensus 22 ~~~~~e~e~a~k-~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~---ikk~~~---~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 22 HGKNGEYEEAVK-TANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKL---IKKNGA---LLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred hccchHHHHHHH-HHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHH---HHhcch---hhhcchhhHHHHHHHHHcc
Confidence 344555555555 444444422 22333344334444455555555422 222211 011111 234444 668
Q ss_pred ChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCh--hhHHhHHHHHhcccchhHHHHHHHH
Q 044131 158 WVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDS--TSVAAVLPAVAEVQELRLGMEIQCL 235 (784)
Q Consensus 158 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~~~~~ 235 (784)
..++|...++....-|..+-..-...+.+.|++++|+++|+.+.++ +. +|. ..-..++.+-... .+. .
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~-dd~d~~~r~nl~a~~a~l----~~~----~ 163 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN-NS-DDQDEERRANLLAVAAAL----QVQ----L 163 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CC-chHHHHHHHHHHHHHHhh----hHH----H
Confidence 8888888888555545445555556677888888888888888765 22 221 1111122111110 110 1
Q ss_pred HHHhCCCCchhHHHH---HHHHHHhcCChHHHHHHHhcC--------CCCCee-----e-----HHHHHHHHHhCCCchH
Q 044131 236 GLKLGFHDHVYVLTG---LVSFYSKCGEVERAELLFRDI--------VRPDLI-----S-----CNAMISGYTCNGKTES 294 (784)
Q Consensus 236 ~~~~g~~~~~~~~~~---li~~y~~~g~~~~A~~~f~~~--------~~~d~~-----~-----~~~li~~~~~~g~~~~ 294 (784)
+......| ..+|.. ..-.+...|++.+|+++++.. .+.|.. . ---|.-.+...|+.++
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 11111112 222222 233466778888888888665 221111 0 1123345667899999
Q ss_pred HHHHHHHHHHcCCCCChhhHH---hHHHhhcCCCChhHH--HHHHHH-----------HHHhCCCcchHHHHHHHHHHHh
Q 044131 295 SLRLFRQLLASAERVNSSTIV---GLIPVFYPFGHLHLT--NCIHSF-----------CLKSGIVSNSSVLTALSTVYSR 358 (784)
Q Consensus 295 A~~l~~~m~~~g~~p~~~t~~---~ll~~~~~~~~~~~a--~~i~~~-----------~~~~g~~~~~~~~~~Li~~y~~ 358 (784)
|..+|...+... .+|+.... .=|.+.....++-.+ ...+.. .+...-.....--+.|+.+|.
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t- 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT- 320 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999999988774 33432222 212233332222221 111110 001111112233355566654
Q ss_pred cCCHHHHHHHHhhcCCCC-hhHHHHHHHHHH--hCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhhhCchHHHHH
Q 044131 359 LNEMEAARKLFDESSEKS-LASWNAMIAGYT--QNGLTEEAISLFQEMQASKVAPNP--VTVSSILSACAQLGAISLGKW 433 (784)
Q Consensus 359 ~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~ 433 (784)
+..+.++++-...+... ...+.+++.... +...+.+|.+++...-.. .|+. ......+......|+++.|..
T Consensus 321 -nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 -NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred -hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 45566777776666543 233444443322 222456666666665543 3333 333344445566788888888
Q ss_pred HHH--------HHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC------CCHH----HHHHHHHHHHHcCCHH
Q 044131 434 VHE--------LVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH------KSEV----TWNTMISGYGLHGHGL 495 (784)
Q Consensus 434 i~~--------~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~------~~~~----~~~~li~~~~~~g~~~ 495 (784)
++. .+.+.+. .+.+..+++.+|.+.++-+.|..++++... .... .|.-...--.++|+.+
T Consensus 398 il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 877 4444333 334556677778877777777776665431 1111 1222222223445555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044131 496 EALQLFSEMLHSGIRPSGVTFLSVLYACSH 525 (784)
Q Consensus 496 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 525 (784)
+|..+++++.+.. ++|..+...++.+|+.
T Consensus 476 ea~s~leel~k~n-~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 476 EASSLLEELVKFN-PNDTDLLVQLVTAYAR 504 (652)
T ss_pred HHHHHHHHHHHhC-CchHHHHHHHHHHHHh
Confidence 5555555555532 3444444444444443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.77 E-value=6e-05 Score=82.85 Aligned_cols=255 Identities=16% Similarity=0.148 Sum_probs=155.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHH
Q 044131 380 WNAMIAGYTQNGLTEEAISLFQEMQASKVAPN-PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYA 458 (784)
Q Consensus 380 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 458 (784)
|.-+...|-..|++++|++++++.+.. .|+ ...|..-...+-+.|++.+|....+.+.... ..|..+-+-.+..+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHH
Confidence 355577788899999999999998875 565 5567777788889999999999999998876 457788888888999
Q ss_pred hcCCHHHHHHHHhhcCCCC------H----HHHHH--HHHHHHHcCCHHHHHHHHHHHHHC--CCC---C----------
Q 044131 459 KCGNIVEARELFDLMSHKS------E----VTWNT--MISGYGLHGHGLEALQLFSEMLHS--GIR---P---------- 511 (784)
Q Consensus 459 k~g~~~~A~~~f~~~~~~~------~----~~~~~--li~~~~~~g~~~~A~~~~~~m~~~--g~~---p---------- 511 (784)
++|++++|.+++.....++ . ..|-. -..+|.+.|++..|++-|....+. .+. -
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 9999999999988877544 1 24433 356788999999998877766542 111 2
Q ss_pred CHHHHHHHHHHHHccCC-------HHHHHHHHHHhHHhcCCCCCcch-----------HHHHHHHH---HhcCCHHHHHH
Q 044131 512 SGVTFLSVLYACSHAGL-------VREGDEIFQSMIHDHGFKPLAEH-----------YACMVDIL---GRAGQLEKALE 570 (784)
Q Consensus 512 d~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p~~~~-----------~~~lv~~l---~r~g~~~eA~~ 570 (784)
...+|..+|...-+... ...|.+++-.+-..-........ -..+-.-. .+...-+++..
T Consensus 354 t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~ 433 (517)
T PF12569_consen 354 TLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEK 433 (517)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 22334444443322211 12233343333221000000000 00000000 01111111211
Q ss_pred HHH-----------hC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 044131 571 FIK-----------GL----AVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAA 635 (784)
Q Consensus 571 ~~~-----------~m----~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 635 (784)
.-. +. +.++|.-..+.-|. ....=+++|...++-+.+..|++...|.+--.+|.+.|++--|.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL~--~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaL 511 (517)
T PF12569_consen 434 AAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKLL--KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLAL 511 (517)
T ss_pred HHhhhhhhhhccccccccccCCcCCCCccHHHHh--cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHH
Confidence 110 00 11112111111111 22334688999999999999999999999999999999998887
Q ss_pred HHHH
Q 044131 636 TVRQ 639 (784)
Q Consensus 636 ~~~~ 639 (784)
+-.+
T Consensus 512 qaL~ 515 (517)
T PF12569_consen 512 QALK 515 (517)
T ss_pred HHHH
Confidence 6543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.00012 Score=78.55 Aligned_cols=217 Identities=12% Similarity=0.024 Sum_probs=119.9
Q ss_pred cCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHH
Q 044131 120 ACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPE---KDTVLWNSMISGLMKNCCFQDSIWV 196 (784)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 196 (784)
..+....+....+.+++ +++....+....--.+...|+.++|......-.. ++.+.|..+--.+-...++++|+..
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 45566667777666666 3333333322222234456888888887766554 4668899998888888999999999
Q ss_pred HHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhc---CCC
Q 044131 197 FGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRD---IVR 273 (784)
Q Consensus 197 ~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~---~~~ 273 (784)
|+.... +.||.... +.-|.-.-++.|+++.....-.. ...
T Consensus 98 y~nAl~---~~~dN~qi----------------------------------lrDlslLQ~QmRd~~~~~~tr~~LLql~~ 140 (700)
T KOG1156|consen 98 YRNALK---IEKDNLQI----------------------------------LRDLSLLQIQMRDYEGYLETRNQLLQLRP 140 (700)
T ss_pred HHHHHh---cCCCcHHH----------------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 998874 34554321 11111111222222222221111 122
Q ss_pred CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcC-CCCChhhHHhHHHh------hcCCCChhHHHHHHHHHHHhCCCcch
Q 044131 274 PDLISCNAMISGYTCNGKTESSLRLFRQLLASA-ERVNSSTIVGLIPV------FYPFGHLHLTNCIHSFCLKSGIVSNS 346 (784)
Q Consensus 274 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~------~~~~~~~~~a~~i~~~~~~~g~~~~~ 346 (784)
....+|....-++.-.|+...|..+.++..+.. -.|+...+.-.... ....|.++.+.+......+ .+....
T Consensus 141 ~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~-~i~Dkl 219 (700)
T KOG1156|consen 141 SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK-QIVDKL 219 (700)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh-HHHHHH
Confidence 345678888888888999999999998887764 24555554433221 1223334444333322211 112222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 044131 347 SVLTALSTVYSRLNEMEAARKLFDESSEK 375 (784)
Q Consensus 347 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~ 375 (784)
.....-.+.+.+.+++++|..++..+..+
T Consensus 220 a~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 220 AFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 23333445556666666666666665443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00052 Score=76.95 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=87.8
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 044131 361 EMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKS 440 (784)
Q Consensus 361 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 440 (784)
.+|.|.+.-++..+ ...|+.+..+-.+.|...+|++-|-+. -|+..|.-++.++.+.|.++.-..++..+.+
T Consensus 1090 ~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1090 SLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34444444333333 346999999999999999998877542 4678899999999999999999999988887
Q ss_pred cCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044131 441 RNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLF 501 (784)
Q Consensus 441 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 501 (784)
..-+|. +-+.||-+|+|.+++.+-.+.... ||+.-...+..-+-..|.++.|.-+|
T Consensus 1162 k~~E~~--id~eLi~AyAkt~rl~elE~fi~g---pN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1162 KVREPY--IDSELIFAYAKTNRLTELEEFIAG---PNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred hhcCcc--chHHHHHHHHHhchHHHHHHHhcC---CCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 765554 557889999999998887665432 44443344444444444444444433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-06 Score=89.39 Aligned_cols=81 Identities=15% Similarity=0.058 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh-HHHHHHHH
Q 044131 563 GQLEKALEFIKGLA--VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDY-LQAATVRQ 639 (784)
Q Consensus 563 g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~ 639 (784)
+.+++|..+|+++. ..+++.+.+.+..+....|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+.+.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 45666777766662 4566777777888888888888888888888888898888888888888888888 55667777
Q ss_pred HHHh
Q 044131 640 VVKK 643 (784)
Q Consensus 640 ~m~~ 643 (784)
.++.
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 7664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.3e-05 Score=76.56 Aligned_cols=191 Identities=14% Similarity=0.074 Sum_probs=128.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHCCCCCCHHH-HHHHHHHH
Q 044131 452 ALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGH-------GLEALQLFSEMLHSGIRPSGVT-FLSVLYAC 523 (784)
Q Consensus 452 ~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~ 523 (784)
.|+--|.+.+++.+|..+.+......+.-|-.-...++.+|+ .+-|.+.|+-.-+++..-|.+. --++.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 455678999999999999998875554444333333444443 3445555555445555544432 33455566
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHh-cCCHHHH
Q 044131 524 SHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACMI-HKDTNLA 600 (784)
Q Consensus 524 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~-~g~~~~a 600 (784)
.-.-.+|+.+-+++++. .|=...|...| .+..+++..|.+.+|+++|-+.. --.|..+|.+++.-|.. .+..+.|
T Consensus 370 FL~~qFddVl~YlnSi~-sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIE-SYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHH-HHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 66778899999999885 33333444444 47889999999999999998774 22467788888877765 5777877
Q ss_pred HHHHHHHhcCC-CCCc-chHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 044131 601 RVASEKLFELD-PENV-GYHVLLSNIYSAERDYLQAATVRQVVKKRKLA 647 (784)
Q Consensus 601 ~~~~~~~~~l~-p~~~-~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 647 (784)
..++ ++.+ |.+. +...+++|.+.+++.+--|.+.|..+...+..
T Consensus 448 W~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 448 WDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 6654 4433 3332 34557789999999999999999988875543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00022 Score=76.68 Aligned_cols=350 Identities=15% Similarity=0.132 Sum_probs=179.2
Q ss_pred HHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHH
Q 044131 255 YSKCGEVERAELLFRDIVR---PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTN 331 (784)
Q Consensus 255 y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 331 (784)
+...|+-++|......-.. ++.+.|..+.-.+....++++|+..|+..+..+ ||.
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN-------------------- 108 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDN-------------------- 108 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCc--------------------
Confidence 4455777777777665544 556778888777777888999999998887642 332
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCC-
Q 044131 332 CIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDES---SEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASK- 407 (784)
Q Consensus 332 ~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 407 (784)
..++.-|.-.-+..|+++.....-... ....-..|..+..++.-.|+...|..+.++.....
T Consensus 109 --------------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 109 --------------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred --------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 222222222222333333332222222 22344678888888888888888888888877654
Q ss_pred CCCCHHHHHHHHHH------HhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--CCHH
Q 044131 408 VAPNPVTVSSILSA------CAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH--KSEV 479 (784)
Q Consensus 408 ~~pd~~t~~~ll~a------~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~ 479 (784)
-.|+...+.....- ....|.++.+.+.+...... +......--.-.+.+.+.|++++|..++..+.. ||..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~ 253 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL 253 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH
Confidence 24555554433322 23456666666655444322 112222333455677888888888888888764 5555
Q ss_pred HHHHH-HHHHHHcCCHHHHH-HHHHHHHH----------------------------------CCCCCCHHHHHHHHHHH
Q 044131 480 TWNTM-ISGYGLHGHGLEAL-QLFSEMLH----------------------------------SGIRPSGVTFLSVLYAC 523 (784)
Q Consensus 480 ~~~~l-i~~~~~~g~~~~A~-~~~~~m~~----------------------------------~g~~pd~~t~~~ll~a~ 523 (784)
.|.-. ..++.+-.+.-+++ .+|....+ .|++|- |..+.+-+
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLy 330 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLY 330 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHH
Confidence 44433 33333333333333 44444433 222221 11222222
Q ss_pred HccCCHHH----HHHHHHHhHHhcCC----------CCCcc--hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHH
Q 044131 524 SHAGLVRE----GDEIFQSMIHDHGF----------KPLAE--HYACMVDILGRAGQLEKALEFIKGL-AVEPGPA-VWG 585 (784)
Q Consensus 524 ~~~g~~~~----a~~~~~~m~~~~~~----------~p~~~--~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~ 585 (784)
-....++- +..+...+... |. +|+.. ++-+++..+-+.|+++.|+.+++.. .-.|+.+ .|.
T Consensus 331 k~p~k~~~le~Lvt~y~~~L~~~-~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~ 409 (700)
T KOG1156|consen 331 KDPEKVAFLEKLVTSYQHSLSGT-GMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYL 409 (700)
T ss_pred hchhHhHHHHHHHHHHHhhcccc-cCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHH
Confidence 11111111 11111111100 00 22221 2334455555666666666666543 3344433 333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044131 586 ALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 586 ~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 645 (784)
.=...+...|+++.|-..++++.++|-.|.....--++...++.+.++|.++..+....|
T Consensus 410 ~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 410 VKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 334445555666666666666666654444443344555555666666666655554433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00023 Score=72.35 Aligned_cols=360 Identities=11% Similarity=0.040 Sum_probs=197.4
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHc-CC-CchHHHHHHHHHH--------------Hc---
Q 044131 143 LFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMK-NC-CFQDSIWVFGDMV--------------RN--- 203 (784)
Q Consensus 143 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~-~g-~~~~A~~l~~~m~--------------~~--- 203 (784)
...-...+..|-..+.-+.|.....+.|.+-...-+.|+.+..+ .| +..++.--+.+.. +.
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~ 176 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVN 176 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhc
Confidence 33444556666667777888888887776533333444433332 22 1112221111111 11
Q ss_pred C-----------CCCCChhhHHhHHHHHhcc--cchhHHHHHHHHH-HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 044131 204 G-----------GTWLDSTSVAAVLPAVAEV--QELRLGMEIQCLG-LKLGFHDHVYVLTGLVSFYSKCGEVERAELLFR 269 (784)
Q Consensus 204 ~-----------g~~pd~~t~~~ll~a~~~~--~~~~~a~~~~~~~-~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 269 (784)
+ .+.|+..+...-+++++.. ++-..+.+.+..+ ...-++.++....++.+.|...|+.++|...|+
T Consensus 177 g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 177 GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 0 1233333333344444332 2222222333222 223456678888888888888898888888888
Q ss_pred cCCCCCeeeHHHH---HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcch
Q 044131 270 DIVRPDLISCNAM---ISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNS 346 (784)
Q Consensus 270 ~~~~~d~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~ 346 (784)
+...-|+.+...| .--+.+.|+.++--.+...+.... .-....|..-....-..++.+.|..+-+..++.. +.+.
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~ 334 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNH 334 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccc
Confidence 7655444433332 123456777777777766665432 1111111111222223445555555555554432 1222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcC--C-CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH-HHH
Q 044131 347 SVLTALSTVYSRLNEMEAARKLFDESS--E-KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSIL-SAC 422 (784)
Q Consensus 347 ~~~~~Li~~y~~~g~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~ 422 (784)
..+-.-.......|+.++|.-.|+... . -+..+|.-|+..|...|.+.||+-+-+...+. +..+..++..+- ..|
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVL 413 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceee
Confidence 222222345556777888877777543 2 36677888888888888888877665554432 223334443331 223
Q ss_pred hh-hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 044131 423 AQ-LGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS--HKSEVTWNTMISGYGLHGHGLEALQ 499 (784)
Q Consensus 423 ~~-~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 499 (784)
.- ..--++|+.+++...+.. +.-....+.+...+...|..+++..++++.. .+|....+.|...+...+.+.+|++
T Consensus 414 ~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred ccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHH
Confidence 22 223466777777666543 2234455666777777777777777777655 5777777777777777777777777
Q ss_pred HHHHHHH
Q 044131 500 LFSEMLH 506 (784)
Q Consensus 500 ~~~~m~~ 506 (784)
.|.....
T Consensus 493 ~y~~ALr 499 (564)
T KOG1174|consen 493 YYYKALR 499 (564)
T ss_pred HHHHHHh
Confidence 7777766
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.2e-06 Score=83.78 Aligned_cols=228 Identities=14% Similarity=0.090 Sum_probs=181.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhh
Q 044131 348 VLTALSTVYSRLNEMEAARKLFDESSE--KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVS-SILSACAQ 424 (784)
Q Consensus 348 ~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a~~~ 424 (784)
--+-+...|.+.|.+.+|.+.|+.-.+ +-+.+|-.|-..|.+..+++.|+.+|.+-.+. .|-.+||. ...+.+-.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 346688899999999999999987543 46678888999999999999999999988764 67666664 45566777
Q ss_pred hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044131 425 LGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLF 501 (784)
Q Consensus 425 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 501 (784)
.++.+.+.++++.+.+.. +.++.....+...|.-.++++.|.+.+.++.+ .+...|+.+.-+|.-.++++-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 899999999999998875 55666667777788889999999999998763 67788999988888899999999999
Q ss_pred HHHHHCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CC
Q 044131 502 SEMLHSGIRPSGV--TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-VE 578 (784)
Q Consensus 502 ~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~ 578 (784)
++.+..-..|+.. .|..+.......|+...|.+.|+-.+.. -....+.++.|.-+-.|.|++++|..+++... +.
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9998866666653 4666777777789999999999877632 12236778888888888888888888887653 34
Q ss_pred CC
Q 044131 579 PG 580 (784)
Q Consensus 579 p~ 580 (784)
|+
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 43
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.8e-06 Score=76.10 Aligned_cols=193 Identities=16% Similarity=0.091 Sum_probs=114.1
Q ss_pred HHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHH
Q 044131 421 ACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEA 497 (784)
Q Consensus 421 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 497 (784)
.|...|+...|+.-++.+++.. +.+..++..+...|.+.|..+.|.+.|++.. ..+-...|....-++..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 3334444444444444444433 3344455555555666666666666665543 23444555555556666666777
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 044131 498 LQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL 575 (784)
Q Consensus 498 ~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m 575 (784)
...|++....-.-| -..||..+.-+-.+.|+.+.|.++|++.++ +.|+ ......+.+.....|++-+|..++++.
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 77776666532211 234566666666667777777777776652 3444 455666777777777777777777765
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcch
Q 044131 576 A--VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGY 617 (784)
Q Consensus 576 ~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~ 617 (784)
. ..++..+.--.+..-...||.+.+-+.-.++-.+-|.....
T Consensus 200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 2 34666655555666667788877777777777777775543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.8e-05 Score=86.85 Aligned_cols=255 Identities=11% Similarity=0.068 Sum_probs=149.1
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC--ChhHH-HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhC----
Q 044131 354 TVYSRLNEMEAARKLFDESSEK--SLASW-NAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLG---- 426 (784)
Q Consensus 354 ~~y~~~g~~~~A~~~f~~~~~~--~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~---- 426 (784)
..+...|++++|.+.++.-... |..+| ......|.+.|+.++|..+|+.++.. .|+...|...+..|....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 4456677777777777664432 43333 34456667777777777777777765 466666655555444111
Q ss_pred --chHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHH
Q 044131 427 --AISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHG-LEALQLFSE 503 (784)
Q Consensus 427 --~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~ 503 (784)
+.+.-.++++.+...- |..... ..+.-.+.....+ ..+..++..
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~-------------------------------~rl~L~~~~g~~F~~~~~~yl~~ 136 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAP-------------------------------RRLPLDFLEGDEFKERLDEYLRP 136 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccch-------------------------------hHhhcccCCHHHHHHHHHHHHHH
Confidence 2333334444333221 111000 0010011111111 234445566
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc-------------CCCCCcc--hHHHHHHHHHhcCCHHHH
Q 044131 504 MLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDH-------------GFKPLAE--HYACMVDILGRAGQLEKA 568 (784)
Q Consensus 504 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-------------~~~p~~~--~~~~lv~~l~r~g~~~eA 568 (784)
+...|+++ +|..|-..|......+-..+++....... .-.|+.. ++..+...|.+.|++++|
T Consensus 137 ~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~A 213 (517)
T PF12569_consen 137 QLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKA 213 (517)
T ss_pred HHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 66677554 34444444444444444444444443221 0123322 335557778888888888
Q ss_pred HHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044131 569 LEFIKGL-AVEPGPA-VWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKL 646 (784)
Q Consensus 569 ~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 646 (784)
++++++. ...|+.+ .|..-...+...|+++.|...++.+.++|+.|--...-.+..+.++|+.++|.++.......+.
T Consensus 214 l~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 214 LEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 8888864 4667644 6777777888888888888888888888888887777788888888888888888887766554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.7e-05 Score=80.59 Aligned_cols=292 Identities=13% Similarity=-0.016 Sum_probs=171.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC---CCChh---HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 044131 348 VLTALSTVYSRLNEMEAARKLFDESS---EKSLA---SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNP-VTVSSILS 420 (784)
Q Consensus 348 ~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~ 420 (784)
.+..+...|...|+.+.+.+.+.... ..+.. ........+...|++++|.+.+++.... .|+. ..+.. ..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~ 84 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hH
Confidence 34444555555666666555444322 11211 1222334566788999999999888765 3433 23331 11
Q ss_pred HHhh----hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCC
Q 044131 421 ACAQ----LGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGH 493 (784)
Q Consensus 421 a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 493 (784)
.+.. .+....+.+.... .....+........+...+...|++++|...+++..+ .+...+..+...|...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 2222 3344444444433 1111122233444566778889999999999988763 456678888888999999
Q ss_pred HHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcc-h--HHHHHHHHHhcCCHHH
Q 044131 494 GLEALQLFSEMLHSGI-RPSG--VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAE-H--YACMVDILGRAGQLEK 567 (784)
Q Consensus 494 ~~~A~~~~~~m~~~g~-~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~--~~~lv~~l~r~g~~~e 567 (784)
+++|+..+++...... .|+. ..+..+...+...|+.++|..+++.........+... . ...+...+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 9999999998877432 1232 2345677778889999999999998753211111111 1 1123333444443333
Q ss_pred HHHH--H-HhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC---------CCCcchHHHHHHHHHhcCCh
Q 044131 568 ALEF--I-KGL-AVEPG---PAVWGALLGACMIHKDTNLARVASEKLFELD---------PENVGYHVLLSNIYSAERDY 631 (784)
Q Consensus 568 A~~~--~-~~m-~~~p~---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~---------p~~~~~~~~l~~~y~~~g~~ 631 (784)
+.++ + ..- +..|. .........++...|+.+.|....+.+.... +......++.+.++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 3332 1 111 11111 2223355667778899999999888775422 12355667888899999999
Q ss_pred HHHHHHHHHHHh
Q 044131 632 LQAATVRQVVKK 643 (784)
Q Consensus 632 ~~a~~~~~~m~~ 643 (784)
++|.+.......
T Consensus 324 ~~A~~~L~~al~ 335 (355)
T cd05804 324 ATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHH
Confidence 999998876654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0028 Score=68.85 Aligned_cols=75 Identities=21% Similarity=0.232 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHh-cCCCCCcchHHHH-HHHHHhc
Q 044131 554 CMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMI-HKDTNLARVASEKLF-ELDPENVGYHVLL-SNIYSAE 628 (784)
Q Consensus 554 ~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~-~g~~~~a~~~~~~~~-~l~p~~~~~~~~l-~~~y~~~ 628 (784)
+-+|++...+++++|++.-++-..+|-..-|-++-.+... .|+..++..++++-= ..+|.|-..|-++ -++.++-
T Consensus 1297 aaidl~ien~qwdk~idtak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ed~lakp 1374 (1636)
T KOG3616|consen 1297 AAIDLMIENDQWDKAIDTAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIFEDMLAKP 1374 (1636)
T ss_pred HHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHHHHhcCC
Confidence 3568888999999999888877777766667676665544 578888877776543 2456666666543 3344443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00017 Score=80.99 Aligned_cols=466 Identities=15% Similarity=0.070 Sum_probs=234.8
Q ss_pred HHHHHHHHHHHhCCCCc-hhHHHHHHHHhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHH
Q 044131 126 IGVLLHGHAIVSGYGSD-LFVGAALVDLYFKFSWVKSARKVFDKMPE---KDTVLWNSMISGLMKNCCFQDSIWVFGDMV 201 (784)
Q Consensus 126 ~a~~~~~~~~~~g~~~d-~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 201 (784)
.+..++..+.....+++ ...+..|-..|...-+...|.+.|+..-+ .|..+|.+....|++...++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 34445555554444444 35677888888877788899999988765 366788999999999999999988833222
Q ss_pred HcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHH
Q 044131 202 RNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNA 281 (784)
Q Consensus 202 ~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~ 281 (784)
+......-...|...--.+...++...+..-+...++.. +.|...|..|..+|..+|++..|.++|++...-++.+|-.
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 110000001112222223344556666666666655543 3467778888888888888888888888776654444432
Q ss_pred H---HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHh
Q 044131 282 M---ISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSR 358 (784)
Q Consensus 282 l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~ 358 (784)
- ...-+..|.+.+|+..+......- .++ ..++...|+.+..... .+.-
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~-----s~e--------~~~q~gLaE~~ir~ak----------------d~~~ 683 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAF-----SLE--------RTGQNGLAESVIRDAK----------------DSAI 683 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH-----HHH--------HHhhhhHHHHHHHHHH----------------HHHH
Confidence 1 123355678888887776654320 000 0011111111111111 1111
Q ss_pred cCC-------HHHHHHHHhhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCc
Q 044131 359 LNE-------MEAARKLFDESSE----KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGA 427 (784)
Q Consensus 359 ~g~-------~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 427 (784)
.|- ++++.+.|.-... .+...|-.+ ..|..+|.+.... .|+......+..-.-..+.
T Consensus 684 ~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e~~--~vn~h~l~il~~q~e~~~~ 751 (1238)
T KOG1127|consen 684 TGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SDACYIFSQEEPS--IVNMHYLIILSKQLEKTGA 751 (1238)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hHHHHHHHHhccc--chHHHHHHHHHHHHHhccc
Confidence 111 1222222211110 111222222 1223333333210 2222211111111111221
Q ss_pred h---H---HHHHHHHHHHHcCCCCchhhHhHHHHHHHh----cC----CHHHHHHHHhhcC---CCCHHHHHHHHHHHHH
Q 044131 428 I---S---LGKWVHELVKSRNFESNIYVSTALIDMYAK----CG----NIVEARELFDLMS---HKSEVTWNTMISGYGL 490 (784)
Q Consensus 428 ~---~---~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g----~~~~A~~~f~~~~---~~~~~~~~~li~~~~~ 490 (784)
. + .|.+.+-. ...+..+...+..|+.-|.+ +| +...|...+.... ..+...||+|.-. ..
T Consensus 752 l~~~d~l~Lg~~c~~~--hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg 828 (1238)
T KOG1127|consen 752 LKKNDLLFLGYECGIA--HLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SG 828 (1238)
T ss_pred CcchhHHHHHHHHhhH--HHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hc
Confidence 1 1 01111100 01111123333333333322 22 1234555555433 3566777776554 55
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHH
Q 044131 491 HGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKAL 569 (784)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~ 569 (784)
.|.+.-|.--|-+-... .+.+..+|..+...|....+++.|...|.+.. .+.|+ ...|--..-.....|+.-++.
T Consensus 829 ~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~ 904 (1238)
T KOG1127|consen 829 IGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERL 904 (1238)
T ss_pred cchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHH
Confidence 56666666656555443 24456677777777777777788877777665 45554 445555555555666666666
Q ss_pred HHHHh-----C--CCCCCHHHHHHHHHHHHhcCCHHH----------HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 044131 570 EFIKG-----L--AVEPGPAVWGALLGACMIHKDTNL----------ARVASEKLFELDPENVGYHVLLSNIYSAERDYL 632 (784)
Q Consensus 570 ~~~~~-----m--~~~p~~~~~~~ll~a~~~~g~~~~----------a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 632 (784)
.+|.. + +--|+..-|..-.---...||.+. |-.+.++.++-.|+...+|...+...-..+.+.
T Consensus 905 ~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~ 984 (1238)
T KOG1127|consen 905 ILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYR 984 (1238)
T ss_pred HHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHH
Confidence 66643 1 123444444444333344454443 333455556667777777777777777777777
Q ss_pred HHHHHHHH
Q 044131 633 QAATVRQV 640 (784)
Q Consensus 633 ~a~~~~~~ 640 (784)
+|.+...+
T Consensus 985 ~a~ela~R 992 (1238)
T KOG1127|consen 985 AALELATR 992 (1238)
T ss_pred HHHHHHHH
Confidence 76665533
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00034 Score=76.73 Aligned_cols=389 Identities=15% Similarity=0.108 Sum_probs=225.2
Q ss_pred CchhHHHHHHH--HhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCC--------CCCCh
Q 044131 141 SDLFVGAALVD--LYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGG--------TWLDS 210 (784)
Q Consensus 141 ~d~~~~~~li~--~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g--------~~pd~ 210 (784)
-|..+..++++ .|.--|+++.|-+-.+.+. +.+.|..|.+.+++..+.+-|.-.+-.|....| -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 46777778876 5778899999987766654 456799999999999999988887777754322 1232
Q ss_pred hhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CeeeHHHHHHHHHhC
Q 044131 211 TSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRP-DLISCNAMISGYTCN 289 (784)
Q Consensus 211 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-d~~~~~~li~~~~~~ 289 (784)
.+=.-+.-....+|-+++|+.++.+..+.. .|=..|-..|.+++|.++-+.-.+- -..+|-.-..-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 333333444567889999999998887643 3445678889999998886543221 112444445555567
Q ss_pred CCchHHHHHHHHH----------HHcCC---------CCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHH
Q 044131 290 GKTESSLRLFRQL----------LASAE---------RVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLT 350 (784)
Q Consensus 290 g~~~~A~~l~~~m----------~~~g~---------~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 350 (784)
++.+.|++.|++- +.... .-|...|...-.-.-..|+.+.|..++..... |-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 8888888888753 11110 11222222222223334444444444443321 22
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHH
Q 044131 351 ALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISL 430 (784)
Q Consensus 351 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 430 (784)
+++...+-.|..++|-++-++ ..|......+..-|-..|++.+|..+|.+.+ +|.+.|+.|-..+--++
T Consensus 943 s~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDR 1011 (1416)
T ss_pred hheeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHH
Confidence 333444445555555555443 2355566677788888888888888887764 34555555543322111
Q ss_pred HH------------HHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC--------------CCCHHHHHHH
Q 044131 431 GK------------WVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS--------------HKSEVTWNTM 484 (784)
Q Consensus 431 a~------------~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--------------~~~~~~~~~l 484 (784)
-. ..-++..+.|.. ..--+-.|-|.|.+.+|+++-=+-. ..|....+--
T Consensus 1012 L~nlal~s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 11 111111122211 1123446778888877776532211 1355555666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHH
Q 044131 485 ISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILG 560 (784)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~ 560 (784)
..-|..+.++++|..++-..++ |...+..|...| +.-..++-+.|.-...-.|+ .+....+.+.+.
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~ 1156 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCL 1156 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHH
Confidence 6667778888888888776654 445555565544 22233333344322112233 345666778888
Q ss_pred hcCCHHHHHHHHHhCC
Q 044131 561 RAGQLEKALEFIKGLA 576 (784)
Q Consensus 561 r~g~~~eA~~~~~~m~ 576 (784)
+.|.+.-|-+-|.+.+
T Consensus 1157 qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1157 QQGAYHAATKKFTQAG 1172 (1416)
T ss_pred hccchHHHHHHHhhhh
Confidence 8888888887776654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.0016 Score=79.43 Aligned_cols=361 Identities=9% Similarity=-0.021 Sum_probs=172.1
Q ss_pred HHhhcCCChHHHHHHhccCCCCCccc--HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhH
Q 044131 151 DLYFKFSWVKSARKVFDKMPEKDTVL--WNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRL 228 (784)
Q Consensus 151 ~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~ 228 (784)
..|...|++.+|..........+... ...........|+++.+...+..+... ....+..........+...++.++
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHHHCCCHHH
Confidence 33555666666666555554332211 011122344566666666666554221 111112222222333345567777
Q ss_pred HHHHHHHHHHhCCC------Cc--hhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCe----eeHHHHHHHHHhCCCc
Q 044131 229 GMEIQCLGLKLGFH------DH--VYVLTGLVSFYSKCGEVERAELLFRDIVR----PDL----ISCNAMISGYTCNGKT 292 (784)
Q Consensus 229 a~~~~~~~~~~g~~------~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~d~----~~~~~li~~~~~~g~~ 292 (784)
+..+...+.+.--. +. ......+...+...|++++|...+++... .+. ..++.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 77666655442110 11 11112223344566677776666655321 111 1223344445556666
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 044131 293 ESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDES 372 (784)
Q Consensus 293 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~ 372 (784)
++|...+.+.....-.... ..........+...+...|+++.|...+++.
T Consensus 508 ~~A~~~~~~al~~~~~~g~------------------------------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 557 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDV------------------------------YHYALWSLLQQSEILFAQGFLQAAYETQEKA 557 (903)
T ss_pred HHHHHHHHHHHHHHhhhcc------------------------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666665432110000 0001122233344444555555555544432
Q ss_pred CC-------C----ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCC--CCCC--HHHHHHHHHHHhhhCchHHHHHHHHH
Q 044131 373 SE-------K----SLASWNAMIAGYTQNGLTEEAISLFQEMQASK--VAPN--PVTVSSILSACAQLGAISLGKWVHEL 437 (784)
Q Consensus 373 ~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd--~~t~~~ll~a~~~~~~~~~a~~i~~~ 437 (784)
.. + ....+..+...+...|++++|...+.+..... ..+. ...+..+.......|+.+.|...+..
T Consensus 558 l~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 558 FQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11 0 01123333344445566666666665543321 1111 22233333445556666666666655
Q ss_pred HHHc----CCCCc--hhhHhHHHHHHHhcCCHHHHHHHHhhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044131 438 VKSR----NFESN--IYVSTALIDMYAKCGNIVEARELFDLMSHKS-------EVTWNTMISGYGLHGHGLEALQLFSEM 504 (784)
Q Consensus 438 ~~~~----g~~~~--~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (784)
+... +.... .......+..+...|+.+.|...+.....+. ...+..+..++...|++++|...+++.
T Consensus 638 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~a 717 (903)
T PRK04841 638 LENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEEL 717 (903)
T ss_pred HHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5332 10000 0001112244555778888888776654321 111345566677888888888888877
Q ss_pred HHC----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 044131 505 LHS----GIRPSG-VTFLSVLYACSHAGLVREGDEIFQSMIHD 542 (784)
Q Consensus 505 ~~~----g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 542 (784)
... |..++. .+...+..++...|+.++|...+.+..+.
T Consensus 718 l~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 718 NENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 653 333322 34556667788889999998888888753
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0049 Score=68.07 Aligned_cols=267 Identities=10% Similarity=0.045 Sum_probs=154.8
Q ss_pred HhccCCCCCcchHHHHHH--HHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHh---
Q 044131 63 LFFSIPKPDLFLFNVIIR--GFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVS--- 137 (784)
Q Consensus 63 ~f~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 137 (784)
-|-...+-|..+-.+|+. -|..-|+.+.|.+ -.+..+. ...|..+.+.|.+.++++-|+-.+..|...
T Consensus 717 dFvgle~Cd~~TRkaml~FSfyvtiG~MD~Afk-sI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga 789 (1416)
T KOG3617|consen 717 DFVGLENCDESTRKAMLDFSFYVTIGSMDAAFK-SIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA 789 (1416)
T ss_pred HhcCccccCHHHHHhhhceeEEEEeccHHHHHH-HHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH
Confidence 343444455556666653 4566677777766 4444332 345667777777766666666655554321
Q ss_pred -----CC-CCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChh
Q 044131 138 -----GY-GSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDST 211 (784)
Q Consensus 138 -----g~-~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~ 211 (784)
.. .++ ..-....-.-...|.+++|..++.+-..- ..|=.-|-..|++++|+++-+.--+- .+ ..
T Consensus 790 RAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~-----DLlNKlyQs~g~w~eA~eiAE~~DRi-HL---r~ 859 (1416)
T KOG3617|consen 790 RALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY-----DLLNKLYQSQGMWSEAFEIAETKDRI-HL---RN 859 (1416)
T ss_pred HHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHhcccHHHHHHHHhhccce-eh---hh
Confidence 11 121 22222222334567788888887765542 33444566678888888776543211 11 23
Q ss_pred hHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCC
Q 044131 212 SVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGK 291 (784)
Q Consensus 212 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~ 291 (784)
||..-.+-+...+|.+.|.+.++..-.. --.+...|. .++....++.+++.++....| ...-+-..|+
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~d~~L~~W--WgqYlES~Ge 927 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKRDESLYSW--WGQYLESVGE 927 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhccchHHHHH--HHHHHhcccc
Confidence 5555555555566777777666553111 111111111 133344444455555544433 3333445799
Q ss_pred chHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhh
Q 044131 292 TESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDE 371 (784)
Q Consensus 292 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 371 (784)
.+.|+.+|..... |-++++..+-.|+.+.|-+|-.+ ..|....-.|.++|-..|++.+|...|-+
T Consensus 928 mdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 928 MDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999988754 55667777888898888887654 34666777889999999999999988875
Q ss_pred cC
Q 044131 372 SS 373 (784)
Q Consensus 372 ~~ 373 (784)
..
T Consensus 993 Aq 994 (1416)
T KOG3617|consen 993 AQ 994 (1416)
T ss_pred HH
Confidence 43
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.8e-06 Score=76.59 Aligned_cols=121 Identities=12% Similarity=0.116 Sum_probs=92.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 044131 499 QLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-A 576 (784)
Q Consensus 499 ~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~ 576 (784)
.+|++..+ +.|+. +.....++...|++++|...|+... .+.|+ ...|..+..++.+.|++++|...+++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555555 44554 4456667788888888888888876 44554 677788888888888888888888876 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 577 VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 577 ~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
..| ++..|..+..++...|+.++|...+++++++.|+++..+.+.+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 445 56688888888888999999999999999999999998888877644
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.4e-06 Score=88.30 Aligned_cols=215 Identities=13% Similarity=0.098 Sum_probs=150.3
Q ss_pred hhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHH
Q 044131 424 QLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQL 500 (784)
Q Consensus 424 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 500 (784)
+.|++..|.-.|+..++.. +.+...|--|.-..+..++-..|+..+.+..+ .|....-+|...|...|.-.+|+..
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4455555555555555543 34455555555555555555556555555442 3455556666667777777777777
Q ss_pred HHHHHHCCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 044131 501 FSEMLHSGIR--------PSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFI 572 (784)
Q Consensus 501 ~~~m~~~g~~--------pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~ 572 (784)
++.-+....+ ++.. +..- ....+........++|-.+....+..+|.+.+.+|.-+|--.|.+++|.+.|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~-~~~~-~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENED-FENT-KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCcccc-ccCC-cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 7766543210 0000 0000 1122223345556777777766676788889999999999999999999999
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 573 KGL-AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 573 ~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
+.. .++|+ ...|+-|........+.++|+.+|.+++++.|.-..+...|+-.|...|.++||.+.+-..
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 986 57885 6699999999999999999999999999999999999999999999999999999987543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.9e-05 Score=79.23 Aligned_cols=179 Identities=16% Similarity=0.041 Sum_probs=112.0
Q ss_pred chhhHhHHHHHHHhcCCHHHHHHHHhhcCC--CC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----H
Q 044131 446 NIYVSTALIDMYAKCGNIVEARELFDLMSH--KS-E---VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGV----T 515 (784)
Q Consensus 446 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t 515 (784)
....+..+...|.+.|++++|...|+++.. |+ . .+|..+..+|.+.|++++|+..|+++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344555666667777777777777776542 22 1 35566667777777777777777777763 23221 3
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHhHHhcCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 044131 516 FLSVLYACSHA--------GLVREGDEIFQSMIHDHGFKPLAE-HYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGA 586 (784)
Q Consensus 516 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ 586 (784)
+..+..++... |+.++|.+.|+.+.+. .|+.. .+..+. +.+...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~----~~~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKK----RMDYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHH----HHHHHHHHH-----------HHHHHH
Confidence 33344444433 5666777777766643 34322 111111 111111100 001224
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 587 LLGACMIHKDTNLARVASEKLFELDPENV---GYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
+...+...|+.+.|...++++++..|+++ ..+..++.+|...|++++|...++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55667889999999999999999877654 68899999999999999999998887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-05 Score=82.05 Aligned_cols=162 Identities=14% Similarity=0.070 Sum_probs=116.0
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSH- 525 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~- 525 (784)
..+......+|...|++++|+++++.. .+.......+..|.+.++.+.|.+.++.|.+. ..| .+...+..++..
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l 176 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNL 176 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHH
Confidence 333344445677889999998888776 45666667788888999999999999999873 344 344445554432
Q ss_pred ---cCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HH
Q 044131 526 ---AGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDT-NL 599 (784)
Q Consensus 526 ---~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~-~~ 599 (784)
.+.+.+|..+|+++.+. ..+++...+.+.-+....|+++||++++++. ...| ++.++-.++..+...|+. +.
T Consensus 177 ~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHH
T ss_pred HhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhH
Confidence 33688999999998754 4567788888888999999999999998775 4455 455777787777888877 77
Q ss_pred HHHHHHHHhcCCCCCc
Q 044131 600 ARVASEKLFELDPENV 615 (784)
Q Consensus 600 a~~~~~~~~~l~p~~~ 615 (784)
+.+...++....|+++
T Consensus 255 ~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 255 AERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHhCCCCh
Confidence 8888888888889865
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.9e-05 Score=87.82 Aligned_cols=200 Identities=15% Similarity=0.134 Sum_probs=167.6
Q ss_pred CCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044131 444 ESNIYVSTALIDMYAKCGNIVEARELFDLMSH--------KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVT 515 (784)
Q Consensus 444 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 515 (784)
+.+...|-..|......++++.|++++++... .-.-.|.++++.-...|.-+...++|+++.+. ---...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 44566777788888889999999999988762 23458999999888889889999999999883 222345
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 044131 516 FLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP---GPAVWGALLGAC 591 (784)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~a~ 591 (784)
|..|+.-|...+..++|-++++.|.++++ .....|...++.+.+..+-+.|..++++. ..-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999877 66788999999999999999999999775 3333 344566666777
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 044131 592 MIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLA 647 (784)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 647 (784)
.++||.+.|+.+++.++.-.|.-...|..++++-.+.|..+.++.+|++.-..++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999998876654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.7e-07 Score=60.12 Aligned_cols=33 Identities=33% Similarity=0.462 Sum_probs=26.6
Q ss_pred CCCCchhHHHHHHHHhhcCCChHHHHHHhccCC
Q 044131 138 GYGSDLFVGAALVDLYFKFSWVKSARKVFDKMP 170 (784)
Q Consensus 138 g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~ 170 (784)
|+.||+++||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.7e-07 Score=59.48 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=27.6
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 044131 240 GFHDHVYVLTGLVSFYSKCGEVERAELLFRDIV 272 (784)
Q Consensus 240 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 272 (784)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00025 Score=74.81 Aligned_cols=212 Identities=12% Similarity=0.077 Sum_probs=121.4
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHH----------HHHHHHH
Q 044131 417 SILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEV----------TWNTMIS 486 (784)
Q Consensus 417 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~----------~~~~li~ 486 (784)
.+.++.-...+++.+.+-+...+... .++.-++.....|...|.+.+....-+...+..-. +...+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34444445556666666666666554 44555555666666666665555444333221111 1222334
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCc--chHHHHHHHHHhcCC
Q 044131 487 GYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLA--EHYACMVDILGRAGQ 564 (784)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~lv~~l~r~g~ 564 (784)
+|...++++.|+..|++....-..||..+ +....+++....+... -+.|.. +.-.+ ..-+.+.|+
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~k-Gne~Fk~gd 373 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREK-GNEAFKKGD 373 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHH-HHHHHhccC
Confidence 55666777777777777666544444322 1122333333333221 233432 11111 445567777
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 565 LEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 565 ~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
+.+|...+.++ ...| |...|.....++.+.|++..|..-++..++++|+....|..=+-++....+|+.|.+.+..-.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777665 2345 455666666677777777777777777777777777777777777777777777777776655
Q ss_pred h
Q 044131 643 K 643 (784)
Q Consensus 643 ~ 643 (784)
+
T Consensus 454 e 454 (539)
T KOG0548|consen 454 E 454 (539)
T ss_pred h
Confidence 4
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00031 Score=85.73 Aligned_cols=294 Identities=13% Similarity=0.032 Sum_probs=174.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcC----CCC------hh--HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH----H
Q 044131 350 TALSTVYSRLNEMEAARKLFDESS----EKS------LA--SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNP----V 413 (784)
Q Consensus 350 ~~Li~~y~~~g~~~~A~~~f~~~~----~~~------~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~ 413 (784)
......+...|++++|...+.... ..+ .. ....+...+...|++++|...+++....-...+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 334445556777777777665432 111 11 1112223455678888888888877653111121 2
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHHc----CC-CCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC-------C----C
Q 044131 414 TVSSILSACAQLGAISLGKWVHELVKSR----NF-ESNIYVSTALIDMYAKCGNIVEARELFDLMSH-------K----S 477 (784)
Q Consensus 414 t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-------~----~ 477 (784)
....+...+...|+++.|...+..+... |- .........+...+...|++++|...+++... + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3334444556778888888887776642 11 11123445566677888888888887765431 1 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchH-
Q 044131 478 EVTWNTMISGYGLHGHGLEALQLFSEMLHS--GIRPS--GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHY- 552 (784)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~- 552 (784)
...+..+...+...|++++|...+++.... ...+. ..++..+.......|+.++|...++.......-......+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 223444555566679999998888877652 11122 2234445556777889999988888775321111111111
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHhCCC--CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhcCC------CCCcc
Q 044131 553 ----ACMVDILGRAGQLEKALEFIKGLAV--EPGP----AVWGALLGACMIHKDTNLARVASEKLFELD------PENVG 616 (784)
Q Consensus 553 ----~~lv~~l~r~g~~~eA~~~~~~m~~--~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~------p~~~~ 616 (784)
......+...|+.+.|.+++..... .... ..+..+..++...|+.+.|...++++++.. ++...
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 1112444567889999888866531 1111 124456667778899999999888887642 22234
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 617 YHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 617 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.+..++.+|...|+.++|...+....+
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677888899999999999888776654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00063 Score=73.01 Aligned_cols=265 Identities=10% Similarity=-0.005 Sum_probs=171.9
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHhCC-CCCCHHHHHHH-HHHHhhhCchHHHHHHHHHHHHcCCCCchhhHh---
Q 044131 377 LASWNAMIAGYTQNGLTEEAISLFQEMQASK-VAPNPVTVSSI-LSACAQLGAISLGKWVHELVKSRNFESNIYVST--- 451 (784)
Q Consensus 377 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~l-l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~--- 451 (784)
...|..+...+...|+.+++...+.+..... ..++......+ ...+...|+++.+..++..+.+.. +.+...++
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 4567777777888888888877777655432 12333222222 223456789999999999988764 44544444
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044131 452 ALIDMYAKCGNIVEARELFDLMSH--KS-EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGL 528 (784)
Q Consensus 452 ~Li~~y~k~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 528 (784)
.+.......|..+.+.+.+..... |+ ...+..+...+...|++++|+..+++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 222333345666777777665332 22 3344556677889999999999999999853 3345667778889999999
Q ss_pred HHHHHHHHHHhHHhcCCCCCc--chHHHHHHHHHhcCCHHHHHHHHHhCC-CCC--CHHHH--H--HHHHHHHhcCCHHH
Q 044131 529 VREGDEIFQSMIHDHGFKPLA--EHYACMVDILGRAGQLEKALEFIKGLA-VEP--GPAVW--G--ALLGACMIHKDTNL 599 (784)
Q Consensus 529 ~~~a~~~~~~m~~~~~~~p~~--~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p--~~~~~--~--~ll~a~~~~g~~~~ 599 (784)
+++|..+++...+.....|+. ..|..+...+...|++++|..++++.. ..| ..... + .++.-....|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999887532222332 235578889999999999999999862 233 22211 1 34445556665555
Q ss_pred HHHH---HHHHhcCCCC--CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 600 ARVA---SEKLFELDPE--NVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 600 a~~~---~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+.+. ........|. ....-...+..+...|++++|.+..+.++.
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 5554 2222221122 112223567778889999999999988865
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00072 Score=67.15 Aligned_cols=307 Identities=14% Similarity=0.097 Sum_probs=176.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHH---hhcCCCChhHHHHHHHHHHHhCCCcchHH-HHHHHHHHH
Q 044131 282 MISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIP---VFYPFGHLHLTNCIHSFCLKSGIVSNSSV-LTALSTVYS 357 (784)
Q Consensus 282 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~---~~~~~~~~~~a~~i~~~~~~~g~~~~~~~-~~~Li~~y~ 357 (784)
+-..+...|++..|+.-|....+ .|+..|.++.+ .|...|....|..-+..++.. .||-.. ..--.....
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 45566777888888888887754 34444444433 445555555555555555443 343221 111223456
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHH
Q 044131 358 RLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHEL 437 (784)
Q Consensus 358 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~ 437 (784)
+.|.++.|..-|+.+...+.. -+....++.+ +.+.+++ ......+..+...|+...+......
T Consensus 118 K~Gele~A~~DF~~vl~~~~s-~~~~~eaqsk-------l~~~~e~---------~~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPS-NGLVLEAQSK-------LALIQEH---------WVLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCC-cchhHHHHHH-------HHhHHHH---------HHHHHHHHHHhcCCchhhHHHHHHH
Confidence 677777777777665543221 0000011111 1111111 1122333444556777777777777
Q ss_pred HHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044131 438 VKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLM---SHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGV 514 (784)
Q Consensus 438 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 514 (784)
+++.. +.|...+..-...|.+.|.+..|+.-+... ...+....--+-..+.+.|+.+.++...++-++ +.||.-
T Consensus 181 llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 181 LLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred HHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 77654 567777777788888888888887655544 345666666777777788888888888877776 567753
Q ss_pred H----HHHH---------HHHHHccCCHHHHHHHHHHhHHhcCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 044131 515 T----FLSV---------LYACSHAGLVREGDEIFQSMIHDHGFKPL-----AEHYACMVDILGRAGQLEKALEFIKGL- 575 (784)
Q Consensus 515 t----~~~l---------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~lv~~l~r~g~~~eA~~~~~~m- 575 (784)
. |..| +......+.+.++.+-.+...+ ..|. ...+..+-..+...|++.||+....+.
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 2 1111 1112334556666666655543 2343 223334445566677777777776654
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcch
Q 044131 576 AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGY 617 (784)
Q Consensus 576 ~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~ 617 (784)
.+.|| +.++.--..|+.....++.|+.-|+++.+++|+|..+
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 35665 4466666667777777777777777777777776543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00013 Score=75.65 Aligned_cols=212 Identities=13% Similarity=0.089 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhhhC-chHHHHHHHHHHHHcCCCCchhhHhHHHHH
Q 044131 379 SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVT-VSSILSACAQLG-AISLGKWVHELVKSRNFESNIYVSTALIDM 456 (784)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 456 (784)
+++.+-..+...++.++|+.+..+++.. .|+..| +..--.++..++ .++++...+..+++..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-------------- 102 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-------------- 102 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--------------
Confidence 4555555566666777777777766653 444332 222112222233 2344444444444332
Q ss_pred HHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 044131 457 YAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHG--LEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDE 534 (784)
Q Consensus 457 y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 534 (784)
.++..+|+-....+.+.|+. ++++.+++++.+.. +-|..+|....-++.+.|+++++++
T Consensus 103 ------------------pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 103 ------------------PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred ------------------CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHH
Confidence 23333444433333333432 44555555555532 2234455555555555566666666
Q ss_pred HHHHhHHhcCCCC-CcchHHHHHHHHHhc---CC----HHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhc----CCHHHH
Q 044131 535 IFQSMIHDHGFKP-LAEHYACMVDILGRA---GQ----LEKALEFIKG-LAVEP-GPAVWGALLGACMIH----KDTNLA 600 (784)
Q Consensus 535 ~~~~m~~~~~~~p-~~~~~~~lv~~l~r~---g~----~~eA~~~~~~-m~~~p-~~~~~~~ll~a~~~~----g~~~~a 600 (784)
+++.+++. .| +...|+....++.+. |. .+++.++.++ +...| |...|+.+.+.+..+ ++..+|
T Consensus 164 ~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~ 240 (320)
T PLN02789 164 YCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEV 240 (320)
T ss_pred HHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhH
Confidence 66666532 22 233444433333332 22 2456666643 34556 566999999988874 345678
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 044131 601 RVASEKLFELDPENVGYHVLLSNIYSAE 628 (784)
Q Consensus 601 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 628 (784)
...+.+++..+|.++.....|+++|...
T Consensus 241 ~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 241 SSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 8888999999999999999999999863
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.2e-05 Score=85.20 Aligned_cols=221 Identities=15% Similarity=0.127 Sum_probs=134.8
Q ss_pred CCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044131 342 IVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSA 421 (784)
Q Consensus 342 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 421 (784)
++|--.+...+...+.++|....|..+|++. ..|...|-+|...|+..+|..+..+-.+ -+||+..|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4555556667777888888888888888764 4677778888888888888777776665 25565555555544
Q ss_pred HhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044131 422 CAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLF 501 (784)
Q Consensus 422 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 501 (784)
..+..- ++.|.++++....+--..|+..+ ...++++++.+.|
T Consensus 467 ~~d~s~-----------------------------------yEkawElsn~~sarA~r~~~~~~---~~~~~fs~~~~hl 508 (777)
T KOG1128|consen 467 LHDPSL-----------------------------------YEKAWELSNYISARAQRSLALLI---LSNKDFSEADKHL 508 (777)
T ss_pred ccChHH-----------------------------------HHHHHHHhhhhhHHHHHhhcccc---ccchhHHHHHHHH
Confidence 443333 44444444443322111222211 1257777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-C-C
Q 044131 502 SEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-V-E 578 (784)
Q Consensus 502 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~ 578 (784)
+.-.+.. +--..||-....+..+.++++.+.+.|..-. .+.|+ .+.|+.+-.+|.+.|+..+|...+++.- . .
T Consensus 509 e~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 509 ERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 7665532 2234566666666677777777777777665 44555 5666666666666666666666665541 1 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 044131 579 PGPAVWGALLGACMIHKDTNLARVASEKLFELD 611 (784)
Q Consensus 579 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~ 611 (784)
-+..+|.+.+-....-|+++.|.+++.++..+.
T Consensus 585 ~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 585 QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred CCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 233366666666666677777777776666543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.7e-05 Score=75.17 Aligned_cols=117 Identities=19% Similarity=0.139 Sum_probs=91.9
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHH
Q 044131 526 AGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGAC-MIHKD--TNLA 600 (784)
Q Consensus 526 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~-~~~g~--~~~a 600 (784)
.+..+++...++...+. -+.+.+.|..+...|...|++++|...+++. .+.| +..+|..+..+. ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 55566777777766532 1334778888888888888888888888876 3556 556777777764 56676 5899
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 601 RVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 601 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
..+++++++++|+++..+.+|+..+...|++++|...++.+.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999988763
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.1e-05 Score=72.23 Aligned_cols=118 Identities=14% Similarity=0.077 Sum_probs=96.8
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
.+..-.+...+...|++++|..+|+-.. +.| +..-|..|...|...|+++.|..+|.++..++|++|.++..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4555566777889999999999998763 566 56689999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 044131 627 AERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMR 689 (784)
Q Consensus 627 ~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 689 (784)
..|+.+.|.+-|+.... | ++ .+|+-.+|.++.+.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~----------~-----------~~--~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR----------I-----------CG--EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHH----------H-----------hc--cChhHHHHHHHHHHHHHHhh
Confidence 99999999999987654 2 11 45777777776666555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.6e-05 Score=71.15 Aligned_cols=105 Identities=16% Similarity=0.042 Sum_probs=90.2
Q ss_pred HHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 044131 534 EIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELD 611 (784)
Q Consensus 534 ~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~ 611 (784)
.+|+..+ .+.|+ ++......+...|++++|.+.++.. ...| +...|..+..++...|+++.|...++++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455444 34555 4666788999999999999999886 3555 56799999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 612 PENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 612 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
|+++..+..++.+|...|++++|...++...+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999987765
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.012 Score=62.43 Aligned_cols=170 Identities=11% Similarity=0.107 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCC-chhhHhHHHHHHHhcCCHHHHHHHHh
Q 044131 394 EEAISLFQEMQASK-VAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFES-NIYVSTALIDMYAKCGNIVEARELFD 471 (784)
Q Consensus 394 ~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~ 471 (784)
+...+.++++...- +.|+ .+|...++.-.+..-++.|+.+|..+.+.+..+ +++++++++.-|+. ++.+-|.++|+
T Consensus 348 ~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 33444444444322 2332 455566666666666677777777776665555 66666666665553 56666666666
Q ss_pred hcCC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhHHhcC--
Q 044131 472 LMSH--KS-EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSG--VTFLSVLYACSHAGLVREGDEIFQSMIHDHG-- 544 (784)
Q Consensus 472 ~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 544 (784)
--.+ +| ..--+..+.-+...++-..|..+|++.+..++.||. ..|..+|.-=+.-|++....++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 4331 22 223334445555556666666666666666555544 3466666666666666666666665554443
Q ss_pred CCCCcchHHHHHHHHHhcCCH
Q 044131 545 FKPLAEHYACMVDILGRAGQL 565 (784)
Q Consensus 545 ~~p~~~~~~~lv~~l~r~g~~ 565 (784)
..|...+-..+++.|+-.+..
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hcCCCChHHHHHHHHhhcccc
Confidence 344444444555555544443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.2e-05 Score=71.45 Aligned_cols=156 Identities=14% Similarity=0.154 Sum_probs=114.3
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 044131 454 IDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGD 533 (784)
Q Consensus 454 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 533 (784)
+-+|.+.|+++......+.+..+. ..|...++.++++..+++..+.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 346778888777655443322221 01223566778888888877753 456667888888899999999999
Q ss_pred HHHHHhHHhcCCCCC-cchHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044131 534 EIFQSMIHDHGFKPL-AEHYACMVDIL-GRAGQ--LEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKL 607 (784)
Q Consensus 534 ~~~~~m~~~~~~~p~-~~~~~~lv~~l-~r~g~--~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 607 (784)
..|+... .+.|+ ...+..+..++ .+.|+ .++|.+++++. ...| +..++..|..++...|++++|+..++++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999876 44564 77777888764 67777 58999999887 3566 5668888888999999999999999999
Q ss_pred hcCCCCCcchHHHH
Q 044131 608 FELDPENVGYHVLL 621 (784)
Q Consensus 608 ~~l~p~~~~~~~~l 621 (784)
++++|.+..-+..+
T Consensus 171 L~l~~~~~~r~~~i 184 (198)
T PRK10370 171 LDLNSPRVNRTQLV 184 (198)
T ss_pred HhhCCCCccHHHHH
Confidence 99998777655444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.5e-05 Score=74.09 Aligned_cols=134 Identities=16% Similarity=0.076 Sum_probs=106.0
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 044131 509 IRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL--AVEPGPAVWGA 586 (784)
Q Consensus 509 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ 586 (784)
..|+......+-.++...|+-+.+..+....... -.-+.+.....+....+.|++.+|...+++. +-+||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 3454333355666777788888888877765432 1223445556888899999999999999887 35667889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 587 LLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
+..+|-+.|+.+.|...+.+++++.|.++.++.+|+-.|.-.|+.++|..+...-...
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999988776653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0022 Score=63.86 Aligned_cols=302 Identities=10% Similarity=0.036 Sum_probs=197.2
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHH---HHHHhCCCchHHHHHHHHHHHcCCCCChhhHH-hHHHhhcCCCC
Q 044131 251 LVSFYSKCGEVERAELLFRDIVRPDLISCNAMI---SGYTCNGKTESSLRLFRQLLASAERVNSSTIV-GLIPVFYPFGH 326 (784)
Q Consensus 251 li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~~~ 326 (784)
|-+.+.-.|++.+|..-|...++-|+..|-++. ..|...|+..-|+.-|.+.++. +||-..-. .--..+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 344455667888888888888888888887765 4688889999999888888764 66633211 11124567899
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 044131 327 LHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQAS 406 (784)
Q Consensus 327 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 406 (784)
++.|..-|..+++..-..+ .-...+.+.--.++-.. .-..+..+.-+|+...|++....+++-
T Consensus 122 le~A~~DF~~vl~~~~s~~-----~~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNG-----LVLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred HHHHHHHHHHHHhcCCCcc-----hhHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 9999999999987752211 11112222111111111 122344556678888888888887764
Q ss_pred CCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--CCHH----H
Q 044131 407 KVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH--KSEV----T 480 (784)
Q Consensus 407 g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~----~ 480 (784)
.+.|...+..-..+|...|.+..|+.=+..+.+.. ..+....--+-..+...|+.+.++....+..+ ||-. .
T Consensus 185 -~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~ 262 (504)
T KOG0624|consen 185 -QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF 262 (504)
T ss_pred -CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH
Confidence 23355555555667777788887776666666554 22344444556677788888888877777653 3322 1
Q ss_pred HHHH---------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHccCCHHHHHHHHHHhHHhcCCCCC
Q 044131 481 WNTM---------ISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFL---SVLYACSHAGLVREGDEIFQSMIHDHGFKPL 548 (784)
Q Consensus 481 ~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 548 (784)
|..+ +......+++.++++..+...+.......++++ .+-..+...|.+.+|++...+.+ .+.|+
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~ 339 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPD 339 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCch
Confidence 2111 123455788889999988887754332233433 34445667889999999998887 67787
Q ss_pred -cchHHHHHHHHHhcCCHHHHHHHHHhCC
Q 044131 549 -AEHYACMVDILGRAGQLEKALEFIKGLA 576 (784)
Q Consensus 549 -~~~~~~lv~~l~r~g~~~eA~~~~~~m~ 576 (784)
+.++.--.++|.-...+++|+.=++...
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 8888888889998899999999888763
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.5e-05 Score=84.85 Aligned_cols=138 Identities=12% Similarity=0.035 Sum_probs=114.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHH
Q 044131 476 KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGV-TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYA 553 (784)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 553 (784)
.++..+-.|.....+.|.+++|+.+++...+ +.||.. .+..+...+.+.+.+++|+...++.. ...|+ ..+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHH
Confidence 3577888888888999999999999999998 678765 56677888999999999999999887 44666 67788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchH
Q 044131 554 CMVDILGRAGQLEKALEFIKGLA-VEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYH 618 (784)
Q Consensus 554 ~lv~~l~r~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 618 (784)
.+..++...|++++|.++|++.- -.|+ ..+|.++..++...|+.+.|..+|+++++...+-...|
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 88889999999999999999873 3444 66999999999999999999999999998765444443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00058 Score=72.08 Aligned_cols=164 Identities=18% Similarity=0.096 Sum_probs=115.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCH
Q 044131 453 LIDMYAKCGNIVEARELFDLMSH--KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVT-FLSVLYACSHAGLV 529 (784)
Q Consensus 453 Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~ 529 (784)
+...|.+.++.+.|...|.+... ++... ..+....++++...+...- +.|+... ...=...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 34477788889999988887542 22111 1233445556655555444 3444321 22235678889999
Q ss_pred HHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 044131 530 REGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPGPA-VWGALLGACMIHKDTNLARVASEK 606 (784)
Q Consensus 530 ~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~ 606 (784)
..|...|.++++. .|+ ...|+.-.-+|.+.|.+.+|++=.+.. .+.|+.. .|.-=..+.....+++.|...|++
T Consensus 375 ~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998854 354 788999999999999998888765544 3455543 565556677778899999999999
Q ss_pred HhcCCCCCcchHHHHHHHHHhc
Q 044131 607 LFELDPENVGYHVLLSNIYSAE 628 (784)
Q Consensus 607 ~~~l~p~~~~~~~~l~~~y~~~ 628 (784)
.++++|++..+...+...+...
T Consensus 452 ale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHhcCchhHHHHHHHHHHHHHh
Confidence 9999999988877777776653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0018 Score=63.13 Aligned_cols=373 Identities=15% Similarity=0.104 Sum_probs=173.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC--CCeeeHHH-HHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhh--
Q 044131 247 VLTGLVSFYSKCGEVERAELLFRDIVR--PDLISCNA-MISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVF-- 321 (784)
Q Consensus 247 ~~~~li~~y~~~g~~~~A~~~f~~~~~--~d~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~-- 321 (784)
-.+.|...|-...++..|-..++++.. |...-|.. -...+-+.+.+..|+++...|... |+...-..-+.+.
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIk 122 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIK 122 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHh
Confidence 344455555666666666666665533 22222221 224455667777777777776542 1111111111111
Q ss_pred cCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHhCCChhHHH
Q 044131 322 YPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEK----SLASWNAMIAGYTQNGLTEEAI 397 (784)
Q Consensus 322 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~ 397 (784)
-+.+++..++.+..+.-. +.+..+.+...-...+.|+.+.|.+-|+...+- ..+.||.-+..| +.|+++.|+
T Consensus 123 Yse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasAL 198 (459)
T KOG4340|consen 123 YSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASAL 198 (459)
T ss_pred cccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHH
Confidence 123334444433333211 122333333333444566666666666554331 334555444433 345566666
Q ss_pred HHHHHHHhCCCCCCHHHH-HHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC-
Q 044131 398 SLFQEMQASKVAPNPVTV-SSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH- 475 (784)
Q Consensus 398 ~l~~~m~~~g~~pd~~t~-~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~- 475 (784)
++..++.+.|++-.+..= .....+ .....+.....+|...+ +..+|.-...+.+.|+.+.|.+.+..|+.
T Consensus 199 k~iSEIieRG~r~HPElgIGm~teg-iDvrsvgNt~~lh~Sal-------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPR 270 (459)
T KOG4340|consen 199 KHISEIIERGIRQHPELGIGMTTEG-IDVRSVGNTLVLHQSAL-------VEAFNLKAAIEYQLRNYEAAQEALTDMPPR 270 (459)
T ss_pred HHHHHHHHhhhhcCCccCccceecc-CchhcccchHHHHHHHH-------HHHhhhhhhhhhhcccHHHHHHHhhcCCCc
Confidence 666666666654211100 000000 00000000011111110 11233333456788999999999999984
Q ss_pred ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC-CCCcc
Q 044131 476 ----KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGF-KPLAE 550 (784)
Q Consensus 476 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~ 550 (784)
-|++|...+.-.- ..|++.+..+-+.-+.+.. +--..||..++-.|++...++.|-.++.+-..- .. -.+..
T Consensus 271 aE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Y 347 (459)
T KOG4340|consen 271 AEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPY 347 (459)
T ss_pred ccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHH
Confidence 4677765553221 2345555555555555543 234679999999999999998888876542100 00 00112
Q ss_pred hHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHH-HHHH-HhcCCHHH----HHHHHHHHhcCCCCCcchHHHHHH
Q 044131 551 HYACMVDILGRA-GQLEKALEFIKGLAVEPGPAVWGAL-LGAC-MIHKDTNL----ARVASEKLFELDPENVGYHVLLSN 623 (784)
Q Consensus 551 ~~~~lv~~l~r~-g~~~eA~~~~~~m~~~p~~~~~~~l-l~a~-~~~g~~~~----a~~~~~~~~~l~p~~~~~~~~l~~ 623 (784)
.|+ +++++.-+ -..++|++-++.+...-.. -...+ +..- .++.+-++ +..-++..+++- -.....-++
T Consensus 348 ly~-LLdaLIt~qT~pEea~KKL~~La~~l~~-kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~Ak 422 (459)
T KOG4340|consen 348 LYD-LLDALITCQTAPEEAFKKLDGLAGMLTE-KLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAK 422 (459)
T ss_pred HHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 222 34444333 3566666555443100000 00111 0100 11222222 222344444432 113445678
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 044131 624 IYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 624 ~y~~~g~~~~a~~~~~~m~ 642 (784)
+|+...++..+.+.|+.-.
T Consensus 423 iyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 423 IYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred hhccccccHHHHHHHHHHH
Confidence 8999999999998887543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00017 Score=72.32 Aligned_cols=181 Identities=15% Similarity=0.057 Sum_probs=126.7
Q ss_pred CCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCch---hhHhHHHHHHHhcCCHHHHHHHHhhcCC--CC-H---HH
Q 044131 410 PNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNI---YVSTALIDMYAKCGNIVEARELFDLMSH--KS-E---VT 480 (784)
Q Consensus 410 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~---~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~-~---~~ 480 (784)
.....+......+...|+++.|...++.+.+.. +.+. ..+..+...|.+.|++++|...|+.+.+ |+ . .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345677778888899999999999999998764 2222 4667788999999999999999998863 21 1 24
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcch
Q 044131 481 WNTMISGYGLH--------GHGLEALQLFSEMLHSGIRPSGV-TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEH 551 (784)
Q Consensus 481 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 551 (784)
|..+..++.+. |+.++|++.|+++... .|+.. ....+..... .. ... . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHH-H--------HH
Confidence 55566666654 7889999999999985 56543 2211111100 00 000 0 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 044131 552 YACMVDILGRAGQLEKALEFIKGL----AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDP 612 (784)
Q Consensus 552 ~~~lv~~l~r~g~~~eA~~~~~~m----~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p 612 (784)
...+.+.+.+.|++++|...+++. |-.| ....|..+..++...|+.++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 235667788999999999888765 3233 345888999999999999999998887766555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0011 Score=69.43 Aligned_cols=117 Identities=23% Similarity=0.193 Sum_probs=81.1
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 044131 522 ACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDTN 598 (784)
Q Consensus 522 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~ 598 (784)
.....|..++|+..++.+... .|+ +..+....+.+.+.|+.++|.+.++++ ...|+ ...|-++..++.+.|+..
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 345567777777777776643 343 555566677777777777777777766 35565 556777777777777777
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 599 LARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 599 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
+|++..+....-+|+|+..|..|+..|...|+-.++..-+.++
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 7777777777777777777777777777777766666665444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0001 Score=80.16 Aligned_cols=187 Identities=16% Similarity=0.157 Sum_probs=116.2
Q ss_pred CCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044131 442 NFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLY 521 (784)
Q Consensus 442 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 521 (784)
+++|--..-..+.+.+.++|-...|..+|++. ..|-..|-+|...|+..+|..+..+-.+ -+||+.-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 44555556667888888999999999999874 4688888888888988888888887777 4788888888888
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHH
Q 044131 522 ACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKG-LAVEP-GPAVWGALLGACMIHKDTNL 599 (784)
Q Consensus 522 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~-m~~~p-~~~~~~~ll~a~~~~g~~~~ 599 (784)
..-....+++|+++++....+. -..+.....+.++++++.+.++. +.+.| -..+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sarA--------~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARA--------QRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHH--------HHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 7777777777887777654320 00111112234555555555543 23333 22355555555555555555
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 600 ARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 600 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
|..+|.+...++|++...+.+++-.|.+.|+-.+|....+...+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 55555555555555555555555555555555555555444433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.036 Score=62.49 Aligned_cols=169 Identities=17% Similarity=0.149 Sum_probs=90.1
Q ss_pred HHHHHHHHhhhCchH---HHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCH----HHHHHHHHH
Q 044131 415 VSSILSACAQLGAIS---LGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSE----VTWNTMISG 487 (784)
Q Consensus 415 ~~~ll~a~~~~~~~~---~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~----~~~~~li~~ 487 (784)
.+.++..|-+.++.. +|.-+++...... +.|..+--.||..|.-.|-+..|.++|+.+.-+++ ..|- +..-
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHH
Confidence 345566676666654 3344444444332 34555566788899999999999999998874433 2222 2234
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH---HHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 488 YGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVR---EGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQ 564 (784)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~---~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~ 564 (784)
+...|++..+...+++...-=-..-..|--.+..||. .|.+. +-..+=+++.... -.....+=+..++.+...++
T Consensus 517 ~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr-~g~ySkI~em~~fr~rL~~S~-q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYR-RGAYSKIPEMLAFRDRLMHSL-QKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHH-cCchhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCc
Confidence 4556777777666665443100000112222233333 23333 3333333332110 00112233556788888999
Q ss_pred HHHHHHHHHhCCCCC--CHHHHHHH
Q 044131 565 LEKALEFIKGLAVEP--GPAVWGAL 587 (784)
Q Consensus 565 ~~eA~~~~~~m~~~p--~~~~~~~l 587 (784)
.++-...++.|..+| |.+-|..|
T Consensus 595 ~~q~~~~~~~~~l~~~e~~I~w~~L 619 (932)
T KOG2053|consen 595 GTQLLKLLESMKLPPSEDRIQWVSL 619 (932)
T ss_pred HHHHHHHHhccccCcchhhcccccc
Confidence 999888888886544 33344443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.3e-05 Score=67.21 Aligned_cols=99 Identities=19% Similarity=0.201 Sum_probs=78.2
Q ss_pred CCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHH
Q 044131 545 FKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 545 ~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 621 (784)
..|+ ......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3443 345566677777788888888887775 3344 566788888888888999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 044131 622 SNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 622 ~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+.+|...|++++|.+.++...+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998877665
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00054 Score=66.68 Aligned_cols=302 Identities=17% Similarity=0.134 Sum_probs=164.9
Q ss_pred HHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhHHHH-HHHHHHhC
Q 044131 314 IVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEK--SLASWNA-MIAGYTQN 390 (784)
Q Consensus 314 ~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~-li~~~~~~ 390 (784)
+++++....+...+..+.++...-.+.. +.+..-.+.|...|....++..|-..++++... ...-|.. -...+-+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 3333433344444444444444333322 224445566677777778888888888776542 2111211 12345567
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH--hhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHH
Q 044131 391 GLTEEAISLFQEMQASKVAPNPVTVSSILSAC--AQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARE 468 (784)
Q Consensus 391 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~--~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 468 (784)
+.+..|+.+...|... |+...-..-+.+. -+.+++..++.+.++....| +..+.+...-...|.|+.+.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 7888888888877642 3322222222221 23455666666655544222 23333333444567788888888
Q ss_pred HHhhcCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC
Q 044131 469 LFDLMSH----KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHG 544 (784)
Q Consensus 469 ~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 544 (784)
-|+...+ .....||.-+. .-+.|++..|+++..++++.|++--+.. .-|..-++.. .+.+ |
T Consensus 166 kFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPEl---------gIGm~tegiD-vrsv----g 230 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPEL---------GIGMTTEGID-VRSV----G 230 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCcc---------CccceeccCc-hhcc----c
Confidence 8877663 34456665443 4455778888888888887775422110 0011111100 0000 0
Q ss_pred CCCCcchHHHH-------HHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 545 FKPLAEHYACM-------VDILGRAGQLEKALEFIKGLA----VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 545 ~~p~~~~~~~l-------v~~l~r~g~~~eA~~~~~~m~----~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
.|-.-|-+.+ ...+-+.|+++.|.+-+..|| -+.|++|...+.-. -..++...+.+-..-+++++|-
T Consensus 231 -Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf 308 (459)
T KOG4340|consen 231 -NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF 308 (459)
T ss_pred -chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC
Confidence 0111122222 234457788888888888886 33466666554321 2355666677777777888887
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHH
Q 044131 614 NVGYHVLLSNIYSAERDYLQAATVRQ 639 (784)
Q Consensus 614 ~~~~~~~l~~~y~~~g~~~~a~~~~~ 639 (784)
-+.++..+.-+|++..-++-|..+..
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 77777778888888888888877754
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.3e-06 Score=54.41 Aligned_cols=35 Identities=51% Similarity=0.734 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSG 513 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 513 (784)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.4e-06 Score=54.09 Aligned_cols=34 Identities=35% Similarity=0.699 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 044131 378 ASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN 411 (784)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 411 (784)
++||+||.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999998
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.001 Score=77.53 Aligned_cols=196 Identities=14% Similarity=0.209 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHhhhCchHHHHHHHHHHHHc-CCC---CchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHH
Q 044131 412 PVTVSSILSACAQLGAISLGKWVHELVKSR-NFE---SNIYVSTALIDMYAKCGNIVEARELFDLMSH--KSEVTWNTMI 485 (784)
Q Consensus 412 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~---~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li 485 (784)
...|...+.-..++++.+.|+++.+++.+. ++. --..+|.+++++-..-|.-+...++|+++.+ .-...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 456666777777788888888887777654 111 1234677777777777777778888888774 2234677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC---cchHHHHHHHHHhc
Q 044131 486 SGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL---AEHYACMVDILGRA 562 (784)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~lv~~l~r~ 562 (784)
..|...+.+++|.++|++|.+. +.-....|...+..+.+...-+.|..++.+..+. -|. .+...-.+++-.+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhhc
Confidence 8888888888888888888875 4445566777788888888888888888877643 444 34445556667788
Q ss_pred CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 044131 563 GQLEKALEFIKGLA--VEPGPAVWGALLGACMIHKDTNLARVASEKLFELD 611 (784)
Q Consensus 563 g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~ 611 (784)
|+.+.+..+|+..- .+...-.|+.++..-.+||+.+..+.+|++++++.
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 88888888887762 23345588888888888888888888888888754
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00024 Score=75.59 Aligned_cols=228 Identities=14% Similarity=0.115 Sum_probs=142.7
Q ss_pred HHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhhCchHHH
Q 044131 356 YSRLNEMEAARKLFDESSEK---SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN-PVTVSSILSACAQLGAISLG 431 (784)
Q Consensus 356 y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a 431 (784)
+.+.|++.+|.-.|+..... +...|--|-..-+.+++-..|+..+++-++. .|+ ...+..|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHHH
Confidence 45667777777777665433 3346666666666666666666666666543 443 33344444445555555555
Q ss_pred HHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCC
Q 044131 432 KWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEML-HSGIR 510 (784)
Q Consensus 432 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~ 510 (784)
...+...++...+- ... . ..+ ++...-+. ..+..........++|-++. +.+.+
T Consensus 373 l~~L~~Wi~~~p~y-~~l----~----~a~--------------~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~ 427 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKY-VHL----V----SAG--------------ENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTK 427 (579)
T ss_pred HHHHHHHHHhCccc-hhc----c----ccC--------------ccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 55555444433110 000 0 000 00000000 11111112334455555544 44544
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHH
Q 044131 511 PSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPGPA-VWGAL 587 (784)
Q Consensus 511 pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~l 587 (784)
+|......|.-.|.-.|.+++|...|+..+ .++|+ ...||-|...|+...+.+||+.-+++. .++|+-+ ++..|
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNl 504 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNL 504 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhh
Confidence 667777777777888899999999999887 45676 678999999999999999999999886 5888866 88999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
.-+|...|.+++|...+-.++.+.+.
T Consensus 505 gIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 505 GISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999998888877654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00048 Score=78.80 Aligned_cols=142 Identities=13% Similarity=0.113 Sum_probs=116.2
Q ss_pred CCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHH
Q 044131 443 FESNIYVSTALIDMYAKCGNIVEARELFDLMS--HK-SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVT-FLS 518 (784)
Q Consensus 443 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ 518 (784)
++.++..+-.|.......|.+++|..+++... .| +...+..+..++.+.+++++|+..+++.... .|+..+ ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 45668888889999999999999999999887 35 4568888999999999999999999999984 676655 555
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 044131 519 VLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLG 589 (784)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~ 589 (784)
+..++.+.|.+++|..+|++.... .|+ ...+..+..+|-..|+.++|...|++.- ..|....|+.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 667888999999999999999852 344 7788889999999999999999998862 4555555555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0016 Score=68.28 Aligned_cols=145 Identities=17% Similarity=0.147 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHH
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSV-LYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMV 556 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv 556 (784)
..+-...-.+...|++++|+..++.++.. .||...|..+ ...+...++.++|.+.++.+. ...|+ ....-.+.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHH
Confidence 33444444556779999999999998874 5666665554 457889999999999999998 45677 45566778
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 044131 557 DILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQA 634 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 634 (784)
++|.+.|+.++|...+++.. .+-|+..|..|..+|...|+..++..+. +..|+..|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHH
Confidence 89999999999999998863 4557889999999999999998887764 4567889999999
Q ss_pred HHHHHHHHhCC
Q 044131 635 ATVRQVVKKRK 645 (784)
Q Consensus 635 ~~~~~~m~~~~ 645 (784)
.......+++.
T Consensus 445 ~~~l~~A~~~~ 455 (484)
T COG4783 445 IIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhc
Confidence 99888777644
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0054 Score=63.75 Aligned_cols=209 Identities=11% Similarity=0.062 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044131 347 SVLTALSTVYSRLNEMEAARKLFDESSEK---SLASWNAMIAGYTQNG-LTEEAISLFQEMQASKVAPNPVTVSSILSAC 422 (784)
Q Consensus 347 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 422 (784)
.++..+-..+...+..++|..+.+.+... +..+|+..-..+...| ++++++..++++.....+ +...+..--..+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 35666677778889999999999986643 4457877767777777 579999999999876322 222333222222
Q ss_pred hhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHH
Q 044131 423 AQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQ 499 (784)
Q Consensus 423 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 499 (784)
...+.. ..+++...++.+. .+|..+|+-..-.+...|++++|++
T Consensus 117 ~~l~~~---------------------------------~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 117 EKLGPD---------------------------------AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred HHcCch---------------------------------hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHH
Confidence 222221 0123333343333 3566677777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcc---CC----HHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhc----CCHHH
Q 044131 500 LFSEMLHSGIRPSGVTFLSVLYACSHA---GL----VREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRA----GQLEK 567 (784)
Q Consensus 500 ~~~~m~~~g~~pd~~t~~~ll~a~~~~---g~----~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~----g~~~e 567 (784)
.++++++.+.. |...|+.....+.+. |. .++..++...++. +.|+ ...|+-+..+|... ++..+
T Consensus 164 ~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~ 239 (320)
T PLN02789 164 YCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPE 239 (320)
T ss_pred HHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchh
Confidence 77777775432 333444433333333 21 2456666655552 3454 66677777777663 34456
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 044131 568 ALEFIKGL-AVEP-GPAVWGALLGACMI 593 (784)
Q Consensus 568 A~~~~~~m-~~~p-~~~~~~~ll~a~~~ 593 (784)
|.+++.+. ...| ++.....|+..+..
T Consensus 240 ~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 240 VSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 77776664 2344 34466666666653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.001 Score=64.21 Aligned_cols=153 Identities=12% Similarity=0.015 Sum_probs=95.9
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044131 451 TALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAG 527 (784)
Q Consensus 451 ~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 527 (784)
.-+-..|.-.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++..... +||..+++.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 444555556666666666665543 2344555556677777777777777777776642 556667777777777777
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 044131 528 LVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLAV-EP-GPAVWGALLGACMIHKDTNLARVAS 604 (784)
Q Consensus 528 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~a~~~~ 604 (784)
+.++|..-|.+..+ +.|+ ...++.|.-.|.-.|+++.|..++...-. .+ |..+-..|.-+-...|+++.|+.+.
T Consensus 149 r~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777776653 3333 44566666666667777777777665532 22 5556666666666677777776665
Q ss_pred HHH
Q 044131 605 EKL 607 (784)
Q Consensus 605 ~~~ 607 (784)
.+-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 553
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00044 Score=73.18 Aligned_cols=122 Identities=15% Similarity=0.119 Sum_probs=101.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 044131 516 FLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMI 593 (784)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~ 593 (784)
..+++..+...+++++|.++|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445677778888999999999998754 354 4556788888888888999988776 2334 56677777778899
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 594 HKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 594 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
.++.+.|..+++++.++.|++-..|..|+.+|...|+|++|......+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999988775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0015 Score=75.63 Aligned_cols=234 Identities=12% Similarity=0.131 Sum_probs=149.1
Q ss_pred CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH-HHhhhCchHHHHHHHHHHHHcCCCCchhhHhH
Q 044131 374 EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILS-ACAQLGAISLGKWVHELVKSRNFESNIYVSTA 452 (784)
Q Consensus 374 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 452 (784)
..+...|..|+..|...+++++|.++.+..... .|+...+..++. .+.+.+....+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 346678999999999999999999999976654 666554433332 34445554444444 2
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 044131 453 LIDMYAKCGNIVEARELFDLMSH--KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVR 530 (784)
Q Consensus 453 Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 530 (784)
+++...+..++.-..-+.+.|.+ .+-.+.-.+..+|.+.|+.++|..+|+++++.. +-|....+.+...++.. +++
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 22222222222222222222221 233366678888888899999999999888865 44566777888888888 888
Q ss_pred HHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----------------------CCCCCHHHHHHHH
Q 044131 531 EGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL----------------------AVEPGPAVWGALL 588 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m----------------------~~~p~~~~~~~ll 588 (784)
+|.+++...+.. |....++.++.+++.++ ....-..+|--|-
T Consensus 167 KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 167 KAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 888888877643 33333444444444433 1222233445555
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044131 589 GACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKL 646 (784)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 646 (784)
.-|+..++++.+..+++.+++.+|.|.....-|+..|. +++.+-..+-+.++-.|+
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~~~~~ee~l~~s~l 286 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKDHSLLEDYLKMSDI 286 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccCcchHHHHHHHhcc
Confidence 67788899999999999999999999888888888877 555444433344443333
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.7e-05 Score=50.97 Aligned_cols=33 Identities=36% Similarity=0.611 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP 511 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 511 (784)
.+||++|.+|++.|+.+.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888777
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00037 Score=73.73 Aligned_cols=127 Identities=16% Similarity=0.134 Sum_probs=102.1
Q ss_pred hHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044131 449 VSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGL 528 (784)
Q Consensus 449 ~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 528 (784)
...+|+..+...++++.|..+|+++.+.+...+-.|+..+...++-.+|++++++..+.. +-|...+..-...|...++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 344566667778899999999999987666666778888888889999999999998742 3344455555566888999
Q ss_pred HHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 044131 529 VREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLAVEP 579 (784)
Q Consensus 529 ~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p 579 (784)
.+.|+++.+++. .+.|+ ..+|..|+..|...|++++|+..++.+|+-|
T Consensus 250 ~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999987 55676 6699999999999999999999999998544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.6e-05 Score=51.04 Aligned_cols=34 Identities=18% Similarity=0.394 Sum_probs=31.2
Q ss_pred eeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC
Q 044131 276 LISCNAMISGYTCNGKTESSLRLFRQLLASAERV 309 (784)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 309 (784)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0032 Score=60.33 Aligned_cols=155 Identities=19% Similarity=0.223 Sum_probs=114.0
Q ss_pred HHHhcCCHHHHHHHHhhcCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 044131 456 MYAKCGNIVEARELFDLMSH-----KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVR 530 (784)
Q Consensus 456 ~y~k~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 530 (784)
+-.-+|+.+.|...++.+.. +-+.-..+| -+-..|++++|+++++..++.. +.|.+++..=+...-..|.--
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l 137 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNL 137 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcH
Confidence 33445666666666655442 122222222 2445788999999999999876 667788887777777788888
Q ss_pred HHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC---CHHHHHHHHH
Q 044131 531 EGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHK---DTNLARVASE 605 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g---~~~~a~~~~~ 605 (784)
+|++-+....+ .+..|.+.|.-+.++|...|+++.|.-.++++- +.| ++..+..|.......| |++.+...++
T Consensus 138 ~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~ 215 (289)
T KOG3060|consen 138 EAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYE 215 (289)
T ss_pred HHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 89888888876 456788999999999999999999999999874 566 4556666666655544 7889999999
Q ss_pred HHhcCCCCCc
Q 044131 606 KLFELDPENV 615 (784)
Q Consensus 606 ~~~~l~p~~~ 615 (784)
+++++.|.+.
T Consensus 216 ~alkl~~~~~ 225 (289)
T KOG3060|consen 216 RALKLNPKNL 225 (289)
T ss_pred HHHHhChHhH
Confidence 9999999643
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00076 Score=60.82 Aligned_cols=114 Identities=16% Similarity=0.187 Sum_probs=86.1
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 044131 500 LFSEMLHSGIRPSG-VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGL-A 576 (784)
Q Consensus 500 ~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~ 576 (784)
+|++... ..|+. .....+...+...|++++|.+.|+..... .| +...+..+...+.+.|++++|...+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 34543 34556667778888888888888887643 34 4677788888888889999999888776 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchH
Q 044131 577 VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYH 618 (784)
Q Consensus 577 ~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 618 (784)
..| +...|..+...+...|+.+.|...++++++++|++....
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 344 566888888889999999999999999999999876543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.019 Score=55.71 Aligned_cols=165 Identities=15% Similarity=0.046 Sum_probs=99.1
Q ss_pred HHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044131 435 HELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGV 514 (784)
Q Consensus 435 ~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 514 (784)
.+.+.......+......-...|.+.|++++|.+..+....-+....|. ..+.+..+.+-|.+.+++|.+- -+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 3334433333333333333445677777777777766633333333332 2234445566666666666652 2344
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACM 592 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~ 592 (784)
|.+-|..++ |....-.+.+.+|.-+|++|. ..|++.+.+-.+.+|.
T Consensus 171 tLtQLA~aw--------------------------------v~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 171 TLTQLAQAW--------------------------------VKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHH--------------------------------HHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHH
Confidence 444444433 222233345566666666662 5677777777888888
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 044131 593 IHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAAT 636 (784)
Q Consensus 593 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 636 (784)
..|++++|+.+.+.++..+|.+|.+...+.-.--..|+-.++..
T Consensus 219 ~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 88899999999999998888888888877777677777766543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00065 Score=66.83 Aligned_cols=99 Identities=22% Similarity=0.256 Sum_probs=71.9
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHH
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPGPA-VWGALLGACMIHKDTNL 599 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~ 599 (784)
..+.+++++|+..|...+ .+.|+ ...|..=..+|.+.|.++.|++=.+.. .+.|... +|..|.-|+...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 345667777777777665 45665 444444566777777777777766654 4666644 89999999999999999
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHH
Q 044131 600 ARVASEKLFELDPENVGYHVLLSNI 624 (784)
Q Consensus 600 a~~~~~~~~~l~p~~~~~~~~l~~~ 624 (784)
|++.|+++++++|++..+...|..+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHH
Confidence 9999999999999988666555433
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.59 E-value=7.1e-05 Score=47.71 Aligned_cols=31 Identities=35% Similarity=0.731 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 044131 378 ASWNAMIAGYTQNGLTEEAISLFQEMQASKV 408 (784)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 408 (784)
++||+||.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0018 Score=59.20 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=40.3
Q ss_pred HHHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 044131 557 DILGRAGQLEKALEFIKGLA-VEPGP----AVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDY 631 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m~-~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 631 (784)
..+...|++++|...++... ..||. ..+..|...+...|+++.|...++.. .-.|-.+..+.+++++|.+.|++
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCH
Confidence 44444455555555544432 11221 13333444455555555555555442 22233344555666666666666
Q ss_pred HHHHHHHH
Q 044131 632 LQAATVRQ 639 (784)
Q Consensus 632 ~~a~~~~~ 639 (784)
++|...++
T Consensus 135 ~~A~~~y~ 142 (145)
T PF09976_consen 135 DEARAAYQ 142 (145)
T ss_pred HHHHHHHH
Confidence 66666654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.01 Score=68.85 Aligned_cols=167 Identities=14% Similarity=0.088 Sum_probs=101.3
Q ss_pred hhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCC
Q 044131 312 STIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNG 391 (784)
Q Consensus 312 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 391 (784)
..+..++..+...++++.+.++....++.. +.....+-.+...|...++.+++..+ .++.......
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~ 97 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccccc
Confidence 345555555556666666666655444332 12222222222244444444433332 2222223333
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHh
Q 044131 392 LTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFD 471 (784)
Q Consensus 392 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 471 (784)
++.-...+...|... .-+...+..+..+|.+.|..+++..+++.+++.. +.|+.+.|-+...|+.. ++++|.+++.
T Consensus 98 ~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 98 KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 332222233333331 2233567777888888999999999999999887 67888999999999998 9999998877
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044131 472 LMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHS 507 (784)
Q Consensus 472 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (784)
+.. .-|...+++.++.+++.++...
T Consensus 174 KAV-----------~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 174 KAI-----------YRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHH-----------HHHHhhhcchHHHHHHHHHHhc
Confidence 643 3366777888888888888874
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.58 E-value=7.9e-05 Score=47.48 Aligned_cols=31 Identities=29% Similarity=0.544 Sum_probs=26.6
Q ss_pred eeHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 044131 277 ISCNAMISGYTCNGKTESSLRLFRQLLASAE 307 (784)
Q Consensus 277 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 307 (784)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00062 Score=56.26 Aligned_cols=92 Identities=21% Similarity=0.224 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 044131 552 YACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAER 629 (784)
Q Consensus 552 ~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 629 (784)
+..+...+.+.|++++|.+++++. ...| +..+|..+...+...|+++.|...++++++..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888775 2344 34577777788888899999999999999999988888889999999999
Q ss_pred ChHHHHHHHHHHHh
Q 044131 630 DYLQAATVRQVVKK 643 (784)
Q Consensus 630 ~~~~a~~~~~~m~~ 643 (784)
++++|.+.+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888776543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00098 Score=70.89 Aligned_cols=98 Identities=19% Similarity=0.199 Sum_probs=49.4
Q ss_pred HHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 044131 521 YACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDT 597 (784)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~ 597 (784)
......|++++|.++|+..++ +.|+ ...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 334455556666665555552 2333 344444555555555555555555444 2333 233455555555555555
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHH
Q 044131 598 NLARVASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 598 ~~a~~~~~~~~~l~p~~~~~~~~l 621 (784)
+.|+..++++++++|+++.....+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 555555555555555555444444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00023 Score=55.60 Aligned_cols=64 Identities=27% Similarity=0.182 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 044131 580 GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAER-DYLQAATVRQVVKK 643 (784)
Q Consensus 580 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~ 643 (784)
++.+|..+...+...|+++.|+..++++++++|+++..+..++.+|...| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999 79999998876543
|
... |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.2 Score=53.57 Aligned_cols=210 Identities=12% Similarity=0.067 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcC---CHHHHHHHHhhcC----CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044131 429 SLGKWVHELVKSRNFESNIYVSTALIDMYAKCG---NIVEARELFDLMS----HKSEVTWNTMISGYGLHGHGLEALQLF 501 (784)
Q Consensus 429 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g---~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~ 501 (784)
+++..+++..+..-...+..+|.++.+---..- ..+..-..+++.. ..-..+|-..+..-.+..-.+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445556666554433334444544443211111 1333333444333 122346777777777777789999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC---C
Q 044131 502 SEMLHSGIRPSG-VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA---V 577 (784)
Q Consensus 502 ~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~---~ 577 (784)
.+..+.+..+-. ....+++. |.-+++.+-|..+|+.=.+.+|-.| +--.+.+|-|.+.++-..|..+|++.. +
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 999999888833 34444444 5557889999999998887765443 445678899999999999999999872 3
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 578 EPG--PAVWGALLGACMIHKDTNLARVASEKLFELDPENV----GYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 578 ~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~----~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
.|+ ..+|..+|.--..-||+.....+-++.+..-|.+- ..-.++.+-|.-.+....-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 454 34999999999999999999998888776555211 13345666777777766555444444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.021 Score=55.39 Aligned_cols=137 Identities=12% Similarity=0.125 Sum_probs=89.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCC-C
Q 044131 399 LFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHK-S 477 (784)
Q Consensus 399 l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~-~ 477 (784)
+.+.+.......|......-...|...++++.|........ +......=+..+.|..+++-|.+.++.|.+- +
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide 168 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDE 168 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 44444444444444444444455677777777776655411 2222222234456777888888888888764 3
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 044131 478 EVTWNTMISGYGL----HGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHD 542 (784)
Q Consensus 478 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 542 (784)
-.+.+.|..++.. .+...+|.-+|++|-++ .+|+..+.+....+|...|++++|..+++....+
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4466666666543 34577888888888765 6888888888888888888888888888887754
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00012 Score=59.80 Aligned_cols=78 Identities=23% Similarity=0.280 Sum_probs=55.5
Q ss_pred cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 044131 562 AGQLEKALEFIKGL----AVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATV 637 (784)
Q Consensus 562 ~g~~~eA~~~~~~m----~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 637 (784)
.|++++|+.+++++ |..|+...|-.+..++...|+++.|..++++ .+.+|.++....+++.+|...|+|++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666666666665 2122455666677788888888888888888 777777777777888888889999988888
Q ss_pred HHH
Q 044131 638 RQV 640 (784)
Q Consensus 638 ~~~ 640 (784)
++.
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0024 Score=65.27 Aligned_cols=265 Identities=10% Similarity=-0.010 Sum_probs=156.7
Q ss_pred HHHHhcCCHHHHHHHHhhc---CCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhhCchH
Q 044131 354 TVYSRLNEMEAARKLFDES---SEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN-PVTVSSILSACAQLGAIS 429 (784)
Q Consensus 354 ~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~ 429 (784)
+.+.+...+.+|.+.+... -..++.-|..-...|...|++++|+--.++-.+ ++|. ..+..-.-..+..+++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhHHHH
Confidence 4555556666666655432 223455566666666666777666655544433 2232 123333333444444444
Q ss_pred HHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC-----CCCHHHHHHHH-HHHHHcCCHHHHHHHHHH
Q 044131 430 LGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS-----HKSEVTWNTMI-SGYGLHGHGLEALQLFSE 503 (784)
Q Consensus 430 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li-~~~~~~g~~~~A~~~~~~ 503 (784)
+|.+.+..- ..+ ....|+..++... +|...+|-.+- .++...|++++|...--.
T Consensus 135 ~A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 444443310 000 1112222222222 13334444442 345667888888777666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcch-------------HHHHHHHHHhcCCHHHHHH
Q 044131 504 MLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEH-------------YACMVDILGRAGQLEKALE 570 (784)
Q Consensus 504 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-------------~~~lv~~l~r~g~~~eA~~ 570 (784)
.++.. ..+......=-.++...++.+.|...|++.+ .+.|+-.. +.-=..-..+.|++.+|.+
T Consensus 195 ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 195 ILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred HHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 55532 1111111111123445667788888887765 44554221 1112244568899999999
Q ss_pred HHHhC-C-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 571 FIKGL-A-----VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 571 ~~~~m-~-----~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
.+... . .+|++..|.....+..+.|+.++|..-.+.+++++|.-...|..-++.|...++|++|.+-++...+.
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99775 3 44556677777788889999999999999999999999999999999999999999999988776553
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.084 Score=53.99 Aligned_cols=236 Identities=19% Similarity=0.201 Sum_probs=155.4
Q ss_pred CCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHH
Q 044131 390 NGLTEEAISLFQEMQASKVAPN--PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEAR 467 (784)
Q Consensus 390 ~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 467 (784)
.|+++.|.+-|+.|... |. ..-+..+.-..-+.|+.+.++++-+..-..- +.-.....+++...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 47777777777777641 21 1122233333456788888887777665543 334567788889999999999999
Q ss_pred HHHhhcC-----CCCHH--HHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHHHHH
Q 044131 468 ELFDLMS-----HKSEV--TWNTMISGYGL---HGHGLEALQLFSEMLHSGIRPSGVT-FLSVLYACSHAGLVREGDEIF 536 (784)
Q Consensus 468 ~~f~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~~~ 536 (784)
++.+.-. ++|+. .--.|+.+-+. ..+...|...-.+..+ +.||-+- -..-..++.+.|++.+|-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 9988654 45543 33334443322 2445566665555554 6777654 334456889999999999999
Q ss_pred HHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 044131 537 QSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL----AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELD 611 (784)
Q Consensus 537 ~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m----~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~ 611 (784)
+.+- ..+|.+..+...+ ..|.|+ .+.+-+++. .++|| .....++..+....|++..|..-++.+...+
T Consensus 287 E~aW---K~ePHP~ia~lY~--~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 287 ETAW---KAEPHPDIALLYV--RARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHH---hcCCChHHHHHHH--HhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 9886 4567776664433 345554 222222222 24665 4467777788889999999999999999999
Q ss_pred CCCcchHHHHHHHHHhc-CChHHHHHHHH
Q 044131 612 PENVGYHVLLSNIYSAE-RDYLQAATVRQ 639 (784)
Q Consensus 612 p~~~~~~~~l~~~y~~~-g~~~~a~~~~~ 639 (784)
|. .+.|.+|+++-... |+-.++.....
T Consensus 360 pr-es~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 360 PR-ESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred ch-hhHHHHHHHHHhhccCchHHHHHHHH
Confidence 98 46899999997665 77666655443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0014 Score=57.33 Aligned_cols=59 Identities=17% Similarity=-0.082 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 584 WGALLGACMIHKDTNLARVASEKLFELDPEN---VGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 584 ~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
+..+..++...|+++.|...++.++...|++ +..+..++.+|...|++++|.+.++.+.
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3334444444555555555555555444443 2334445555555555555555544443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0041 Score=69.11 Aligned_cols=140 Identities=14% Similarity=0.054 Sum_probs=69.6
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcc--------CCHHHHHHHHHHhH
Q 044131 475 HKSEVTWNTMISGYGLH-----GHGLEALQLFSEMLHSGIRPSGV-TFLSVLYACSHA--------GLVREGDEIFQSMI 540 (784)
Q Consensus 475 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~--------g~~~~a~~~~~~m~ 540 (784)
..|...|...+.|.... +....|+.+|++..+ ..||.. .+..+..++... ..+..+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 45677777777775432 226688889998888 467653 233222222111 01122222222211
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcc
Q 044131 541 HDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVG 616 (784)
Q Consensus 541 ~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 616 (784)
.......+...|..+.-.....|++++|...+++. .+.|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 10011112334444444444455555555555554 24555555555555555555555555555555555555554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0063 Score=55.61 Aligned_cols=125 Identities=18% Similarity=0.180 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC--cchHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSG----VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL--AEHYA 553 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~ 553 (784)
.|..++..+ ..++...+...++++.... |+. .....+...+...|++++|...|+..... .-.|. ....-
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 444555555 3677788888888887753 332 23334556677788888888888888754 22222 12344
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 554 CMVDILGRAGQLEKALEFIKGLAVEP-GPAVWGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 554 ~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
.+...+...|++++|+..++..+-.+ .+..+..+...+...|+.+.|+..|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 46777888888888888887764222 34466667778888899999988888763
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0022 Score=56.17 Aligned_cols=103 Identities=12% Similarity=0.082 Sum_probs=61.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHH
Q 044131 516 FLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VEPG----PAVWGALLG 589 (784)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~----~~~~~~ll~ 589 (784)
+..+...+...|++++|.+.|+.+.+.+.-.|. ...+..+..++.+.|++++|.+.++... ..|+ ..+|..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444455555666666666555533211111 2344446666666666666666666542 2232 446777777
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCcchH
Q 044131 590 ACMIHKDTNLARVASEKLFELDPENVGYH 618 (784)
Q Consensus 590 a~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 618 (784)
++...|+.+.|...++++++..|+++...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 77888888888888888888888876543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0065 Score=57.13 Aligned_cols=109 Identities=19% Similarity=0.169 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHH
Q 044131 478 EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPS--GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYAC 554 (784)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 554 (784)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|..+++...+ +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 45677777788888999999999988876432222 24677777888888888888888887763 3443 344555
Q ss_pred HHHHHH-------hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 555 MVDILG-------RAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 555 lv~~l~-------r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
+...+. +.|++++|... .+.|...++++++.+|++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~-------------------------~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAW-------------------------FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHH-------------------------HHHHHHHHHHHHHhCccc
Confidence 555555 34444444333 345677788888888864
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00057 Score=52.55 Aligned_cols=57 Identities=25% Similarity=0.204 Sum_probs=45.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 587 LLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+...+...|+++.|+..++++++.+|+++..+..++.++...|++++|...++...+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445667788888888888888888888888888888888888888888888877654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.003 Score=57.17 Aligned_cols=100 Identities=16% Similarity=0.110 Sum_probs=80.4
Q ss_pred CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHH
Q 044131 544 GFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVL 620 (784)
Q Consensus 544 ~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 620 (784)
|+.++ .+..-....-+-..|++++|..+|+-+- ..| +..-|..|...|...++++.|...|..+..++++||.++..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 44444 2222333444557899999999987652 233 55578999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 044131 621 LSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 621 l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.+..|...|+.+.|.+-+....+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999887654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0041 Score=58.73 Aligned_cols=130 Identities=13% Similarity=0.100 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHH
Q 044131 477 SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPS--GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYA 553 (784)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 553 (784)
....+..+...|...|++++|+..|++.......|+ ...+..+...+.+.|++++|..++++..+ +.|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344667777777888888888888888876443332 35677777788888888888888888764 3443 45566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 554 CMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERD 630 (784)
Q Consensus 554 ~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 630 (784)
.+..++...|+...+..-.+.. ...++.|...++++++++|++ |..+.+.+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666777777665554333221 123677889999999999986 5555555655554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0019 Score=68.73 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=81.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcC
Q 044131 485 ISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAG 563 (784)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g 563 (784)
...+...|++++|+++|++.++.. +-+...|..+..++...|++++|...++..++ +.|+ ...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhC
Confidence 445667899999999999999853 33566788888899999999999999999874 4564 677888899999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 044131 564 QLEKALEFIKGL-AVEPGPAVWGALLGAC 591 (784)
Q Consensus 564 ~~~eA~~~~~~m-~~~p~~~~~~~ll~a~ 591 (784)
++++|...+++. .+.|+......++..|
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999886 4666655444444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.018 Score=55.45 Aligned_cols=149 Identities=15% Similarity=0.173 Sum_probs=115.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHH
Q 044131 481 WNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSV-LYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDI 558 (784)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~ 558 (784)
|..++-+....|+.+.|...++++... + |...-...+ ..-+...|++++|.+++++++++ .|+ ..+|--=+-+
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHHH
Confidence 344455566778999999999998886 3 544322222 12245689999999999999865 354 5566666667
Q ss_pred HHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 044131 559 LGRAGQLEKALEFIKGL--AVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQA 634 (784)
Q Consensus 559 l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 634 (784)
+-..|+--+|++-+... .+..|...|.-|...|...|+++.|.-.+++++=+.|.++..+..++.++...|--+..
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 77778777888777665 36789999999999999999999999999999999999999999999999887764443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.54 Score=53.50 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 044131 583 VWGALLGACMIHKDT---NLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLA 647 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~---~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 647 (784)
+-+.|+..|++.++. -+|+-+.|..+..+|.|...-..|..+|.-.|-...|.++++.+.-+.|.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ 505 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQ 505 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhh
Confidence 344555666665543 34445556666666666666666666666666666666666666544443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0016 Score=64.21 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=78.0
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 044131 556 VDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQ 633 (784)
Q Consensus 556 v~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 633 (784)
.+-+.+.+++++|+..+.+. .+.| |++.|..=..||.+.|.++.|.+..+.++.++|.....|..|+-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34567889999999999876 5666 667777888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 044131 634 AATVRQVVKK 643 (784)
Q Consensus 634 a~~~~~~m~~ 643 (784)
|.+.+++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999876554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.22 Score=51.78 Aligned_cols=107 Identities=19% Similarity=0.218 Sum_probs=82.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCch
Q 044131 349 LTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAI 428 (784)
Q Consensus 349 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 428 (784)
.+..+.-+...|+...|.++-.+..-++-.-|-..|.+|+..+++++-.++-.. +-.++-|..++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455566788999999999999888999999999999999999877665332 22347788899999999998
Q ss_pred HHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHh
Q 044131 429 SLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFD 471 (784)
Q Consensus 429 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 471 (784)
.+|..+...+ .+..-+.+|.+||++.+|.+.--
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 8888776651 22567889999999999877633
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0019 Score=60.77 Aligned_cols=92 Identities=13% Similarity=-0.099 Sum_probs=72.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGL-AVEPG----PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSN 623 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 623 (784)
...|..++..+...|++++|+..+++. .+.|+ +.+|..+...+...|+.++|...++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566666777778888888887765 23332 3488899999999999999999999999999999999999999
Q ss_pred HHH-------hcCChHHHHHHHHH
Q 044131 624 IYS-------AERDYLQAATVRQV 640 (784)
Q Consensus 624 ~y~-------~~g~~~~a~~~~~~ 640 (784)
+|. ..|++++|...++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 999 78888866655543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00022 Score=46.38 Aligned_cols=32 Identities=34% Similarity=0.469 Sum_probs=30.6
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 044131 604 SEKLFELDPENVGYHVLLSNIYSAERDYLQAA 635 (784)
Q Consensus 604 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 635 (784)
++++++++|+++.+|..|+.+|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00082 Score=52.18 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=37.9
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 593 IHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 593 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
..|+++.|...++++++.+|+++..+..++.+|.+.|++++|.++++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467777778888888888888777777888888888888888777765543
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.37 Score=50.06 Aligned_cols=121 Identities=14% Similarity=0.138 Sum_probs=88.0
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 044131 451 TALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVR 530 (784)
Q Consensus 451 ~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 530 (784)
+.-|.-+...|+...|.++-.+..-||-.-|-..+.+|+..+++++-.++... +-.++-|...+.+|...|..+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455566778899999998888888999999999999999999876664332 223477888889999999999
Q ss_pred HHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044131 531 EGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGAC 591 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~ 591 (784)
+|..+...+. +.--+.+|.++|.+.+|.+.--+. .|...+..+..-|
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~~ 301 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHHC
Confidence 9988887631 245678888999998887765442 2444444444443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.003 Score=59.64 Aligned_cols=80 Identities=15% Similarity=0.066 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCC-CCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGLA-VEP---G-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIY 625 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p---~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 625 (784)
.+..+...+.+.|++++|...+++.- ..| + ...|..+...+...|+++.|...++++++..|+++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 44555555666666666666665541 122 1 357888888889999999999999999999999999999999999
Q ss_pred HhcCC
Q 044131 626 SAERD 630 (784)
Q Consensus 626 ~~~g~ 630 (784)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 88877
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.086 Score=57.13 Aligned_cols=193 Identities=16% Similarity=0.155 Sum_probs=107.2
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHH
Q 044131 354 TVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKW 433 (784)
Q Consensus 354 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 433 (784)
+.++-.|.+.+|-++|. ++|....|+++|..|+-- -...-+...|..++-+.
T Consensus 640 ~~~Ay~gKF~EAAklFk------------------~~G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKm 691 (1081)
T KOG1538|consen 640 DVFAYQGKFHEAAKLFK------------------RSGHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKM 691 (1081)
T ss_pred HHHHhhhhHHHHHHHHH------------------HcCchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHH
Confidence 34455677777777765 456677777777776521 12223344455544444
Q ss_pred HHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 044131 434 VHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSG 513 (784)
Q Consensus 434 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 513 (784)
+.+.-.+ +..++.--.+-..|+...|+.++|..+. +.+|-.+-++++-+++-. .+.
T Consensus 692 L~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~er 747 (1081)
T KOG1538|consen 692 LIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AER 747 (1081)
T ss_pred HHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hhh
Confidence 4332221 1112212234456677778887776653 234444445554444322 233
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHH-HHHHH----
Q 044131 514 VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-VEPGPA-VWGAL---- 587 (784)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~-~~~~l---- 587 (784)
.+...+..-+-+...+.-|-++|.+|-. ...++++....|+++||..+-++.| +.||+. -|...
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 3444444444455566677778877742 2457788888888888888888887 555543 22211
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHh
Q 044131 588 ------LGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 588 ------l~a~~~~g~~~~a~~~~~~~~ 608 (784)
-.|+.+.|+..+|.++++++.
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 135556666666666666654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0013 Score=50.44 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=49.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 555 MVDILGRAGQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 555 lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
+...+.+.|++++|.+.+++. ...|+ ...|..+..++...|+++.|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677889999999998886 35564 55899999999999999999999999999999875
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.01 Score=60.80 Aligned_cols=136 Identities=12% Similarity=0.133 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHH
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYA-CSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVD 557 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 557 (784)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 468888888888888999999999998543 3344455554444 344667777999999998765 345677889999
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcch
Q 044131 558 ILGRAGQLEKALEFIKGLA--VEPG---PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGY 617 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m~--~~p~---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~ 617 (784)
.+.+.|+.+.|..+|++.- +.++ ..+|...+.--..+|+++....+.+++.+.-|++...
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 9999999999999999862 2332 3599999999999999999999999999988885433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0045 Score=61.52 Aligned_cols=101 Identities=23% Similarity=0.182 Sum_probs=86.7
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhcCCCCCcchHHHH
Q 044131 547 PLAEHYACMVDILGRAGQLEKALEFIKGLA-VE-PGPAVWGALLGACMIH---KDTNLARVASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 547 p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~-p~~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~l~p~~~~~~~~l 621 (784)
-|.+.|--|...|.+.|++++|..-|.+.- +. +++..+..+..++... ....++..+++++++++|+|.....+|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 358999999999999999999999998763 44 4566787777766543 356889999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCc
Q 044131 622 SNIYSAERDYLQAATVRQVVKKRKLA 647 (784)
Q Consensus 622 ~~~y~~~g~~~~a~~~~~~m~~~~~~ 647 (784)
+-.+...|++.+|...++.|.+....
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999885544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.011 Score=65.86 Aligned_cols=145 Identities=16% Similarity=0.118 Sum_probs=102.5
Q ss_pred CCCCCCHHHHHHHHHHHHccC-----CHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhc--------CCHHHHHHHH
Q 044131 507 SGIRPSGVTFLSVLYACSHAG-----LVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRA--------GQLEKALEFI 572 (784)
Q Consensus 507 ~g~~pd~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~--------g~~~eA~~~~ 572 (784)
.+.+.|...|...+.+..+.. ..++|..+|++.+ .+.|+ ...|..+...+... ++++.+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 345677788888888755432 3778999999988 55788 44555444333221 2344555555
Q ss_pred HhC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 044131 573 KGL---A-VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAK 648 (784)
Q Consensus 573 ~~m---~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k 648 (784)
++. + ...++.+|.++.-.....|++++|...++++++++|+ ...|.+++.+|...|+.++|...++........
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~- 485 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG- 485 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Confidence 542 2 2335678888877777889999999999999999994 789999999999999999999998776553322
Q ss_pred CCcccEEE
Q 044131 649 APGCTLIE 656 (784)
Q Consensus 649 ~~g~s~i~ 656 (784)
.|.+-|+|
T Consensus 486 ~pt~~~~~ 493 (517)
T PRK10153 486 ENTLYWIE 493 (517)
T ss_pred CchHHHHH
Confidence 23444543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0061 Score=50.07 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 044131 481 WNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMI 540 (784)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 540 (784)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|.++|+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666532 2223444445555555555555555555544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0019 Score=50.98 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=48.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...+...++++.|..+++++++++|+++..+...+.+|...|++++|.+.++..-+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999998887765
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.017 Score=52.75 Aligned_cols=102 Identities=18% Similarity=0.244 Sum_probs=66.9
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--Cc
Q 044131 541 HDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL---AVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPE--NV 615 (784)
Q Consensus 541 ~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m---~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~--~~ 615 (784)
++..+.|+..+--.|...+.+.|+..||...+++. ++.-|+...-.+..+....++...|...++++.+.+|. .|
T Consensus 81 ~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 81 EELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 33455566666666777777777777777777665 24556666666777777777777777777777776653 34
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 616 GYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 616 ~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
....+++..|+..|+.++|+.-++...
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHH
Confidence 456666777777777777766665544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0012 Score=51.23 Aligned_cols=63 Identities=24% Similarity=0.412 Sum_probs=40.1
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 044131 561 RAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSN 623 (784)
Q Consensus 561 r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 623 (784)
..|++++|+++++++ ...| +..++..+..++...|++++|+..++++...+|+++.++.+++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456666666666665 2233 45566667777777777777777777777777776666655554
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.004 Score=50.71 Aligned_cols=80 Identities=16% Similarity=0.288 Sum_probs=46.8
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHH
Q 044131 491 HGHGLEALQLFSEMLHSGI-RPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKA 568 (784)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA 568 (784)
.|++++|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. . ...|+ ....-.+...|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5677777777777777432 12344445566777777777777777766 2 22232 23333446666777777777
Q ss_pred HHHHHh
Q 044131 569 LEFIKG 574 (784)
Q Consensus 569 ~~~~~~ 574 (784)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 776654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.034 Score=59.45 Aligned_cols=120 Identities=14% Similarity=0.076 Sum_probs=80.0
Q ss_pred CCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHc--CCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC----CCHHH
Q 044131 407 KVAPNPVTVSSILSACAQLGAISLGKWVHELVKSR--NFESNIYVSTALIDMYAKCGNIVEARELFDLMSH----KSEVT 480 (784)
Q Consensus 407 g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~----~~~~~ 480 (784)
+.+.+...+..++..+.+..+++.+..++-..... ....-..+..++|..|.+.|..+.+..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556666777777777777777777666665544 2222233445777777777777777777765442 67777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044131 481 WNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHA 526 (784)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 526 (784)
+|.||..+.+.|++..|.++..+|..++...+..|+.--+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777777777677777776666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=1.1 Score=49.58 Aligned_cols=127 Identities=13% Similarity=0.097 Sum_probs=75.2
Q ss_pred CCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCh----hhHHhHHHHHhcccchhHHHH
Q 044131 156 FSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDS----TSVAAVLPAVAEVQELRLGME 231 (784)
Q Consensus 156 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~----~t~~~ll~a~~~~~~~~~a~~ 231 (784)
.|++++|++++-.+..||.. |..+.+-|++-...++++. ||-..|. ..|..+-..++....++.|.+
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~----g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN----GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc----cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999888753 5566677777766666543 1222222 255566666666666666666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHH
Q 044131 232 IQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQ 301 (784)
Q Consensus 232 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 301 (784)
.+.+.-. ...+++.|.+...+++-+.+-+.+++. ....-.|...+...|.-++|.+.|-+
T Consensus 818 yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 818 YYSYCGD---------TENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHh
Confidence 6544311 123455555555555555555555543 23344566666777777777666543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.94 Score=46.56 Aligned_cols=96 Identities=11% Similarity=0.158 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhc-CCCCC--cch
Q 044131 481 WNTMISGYGLHGHGLEALQLFSEMLHSGIRP-----SGV-TFLSVLYACSHAGLVREGDEIFQSMIHDH-GFKPL--AEH 551 (784)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----d~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~--~~~ 551 (784)
+..+...+.+.|++++|+++|++....-... +.. .|...+-.+...|+...|.+.|+...... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 3445666778888888888888877643221 111 23334445666788888888888765221 12222 223
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHhCC
Q 044131 552 YACMVDILGR--AGQLEKALEFIKGLA 576 (784)
Q Consensus 552 ~~~lv~~l~r--~g~~~eA~~~~~~m~ 576 (784)
...|++++-. ...+++|..-|+++.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 3444555432 235566666666653
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.014 Score=55.23 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=74.8
Q ss_pred HHHHhhc--CCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-------------
Q 044131 467 RELFDLM--SHKSEVTWNTMISGYGLH-----GHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHA------------- 526 (784)
Q Consensus 467 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~------------- 526 (784)
...|+.. ..+|-.++..++..|.+. |..+=....+..|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 456777788888777654 66777777788888888888888888888876542
Q ss_pred ---CCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCH
Q 044131 527 ---GLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQL 565 (784)
Q Consensus 527 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~ 565 (784)
.+.+-|++++++|. .+|+.||.+++..+++.+|+.+..
T Consensus 114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccHH
Confidence 23466889999994 679999999999999999887753
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.29 Score=51.28 Aligned_cols=159 Identities=17% Similarity=0.068 Sum_probs=98.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC---CH----HHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044131 453 LIDMYAKCGNIVEARELFDLMSHK---SE----VTWNTMISGYGL---HGHGLEALQLFSEMLHSGIRPSGVTFLSVLYA 522 (784)
Q Consensus 453 Li~~y~k~g~~~~A~~~f~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 522 (784)
|+-.|-...+++...++.+.+... ++ ..-....-++.+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333467777777777777777642 11 112223344455 68888888888886666667777777666554
Q ss_pred HHc---------cCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHH----HHHHHH---Hh----CC-C--CC
Q 044131 523 CSH---------AGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLE----KALEFI---KG----LA-V--EP 579 (784)
Q Consensus 523 ~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~----eA~~~~---~~----m~-~--~p 579 (784)
|-. ....++|.+.|.+. +.+.|+..+--.++-++..+|.-. |..++. .. -+ . ..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 421 22467777777743 466676544444444555555322 222222 11 11 2 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 580 GPAVWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 580 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
|--.+.+++.++...||.+.|.+++++++++.|..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 44566889999999999999999999999998763
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.12 Score=53.04 Aligned_cols=93 Identities=20% Similarity=0.171 Sum_probs=51.2
Q ss_pred HHHcc-CCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC---C-----CCCHH-HHHHH
Q 044131 522 ACSHA-GLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILGRAGQLEKALEFIKGLA---V-----EPGPA-VWGAL 587 (784)
Q Consensus 522 a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r~g~~~eA~~~~~~m~---~-----~p~~~-~~~~l 587 (784)
.|... |++++|.++|+...+-+.-... ...+..+.+++.+.|++++|.+++++.. . +.+.. .+-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 5666666666655443322221 3345566777888888888888887652 1 11111 12222
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
+-.+...||...|...+++..+.+|.-
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 224455788888999999888888743
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.054 Score=47.12 Aligned_cols=91 Identities=15% Similarity=0.184 Sum_probs=67.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHH
Q 044131 484 MISGYGLHGHGLEALQLFSEMLHSGIRPS--GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILG 560 (784)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~ 560 (784)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+|+.....+.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45567788999999999999999887665 34677888899999999999999999886542211 1122233445778
Q ss_pred hcCCHHHHHHHHHh
Q 044131 561 RAGQLEKALEFIKG 574 (784)
Q Consensus 561 r~g~~~eA~~~~~~ 574 (784)
..|+.+||.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999998887643
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.037 Score=46.45 Aligned_cols=81 Identities=14% Similarity=0.067 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhC--------chHHHHHHHHHHHHcCCCCchhh
Q 044131 379 SWNAMIAGYTQNGLTEEAISLFQEMQASKV-APNPVTVSSILSACAQLG--------AISLGKWVHELVKSRNFESNIYV 449 (784)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~~--------~~~~a~~i~~~~~~~g~~~~~~~ 449 (784)
+-...|..+...+++.....+|+.+.+.|+ .|+..+|+.+|.+.++.. .+-....+++.++..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445566677777999999999999999999 999999999999887653 34456778888888899999999
Q ss_pred HhHHHHHHHh
Q 044131 450 STALIDMYAK 459 (784)
Q Consensus 450 ~~~Li~~y~k 459 (784)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9988877665
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.071 Score=54.68 Aligned_cols=126 Identities=15% Similarity=0.084 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHH
Q 044131 379 SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSA-CAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMY 457 (784)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 457 (784)
+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..||+...+. ++.+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34455555555555555555555555322 1111222221111 22234555566666666654 455666777777777
Q ss_pred HhcCCHHHHHHHHhhcCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 458 AKCGNIVEARELFDLMSH--K----SEVTWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 458 ~k~g~~~~A~~~f~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
.+.|+.+.|+.+|++... + -...|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777653 1 234777777777777777777777777776
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0036 Score=43.59 Aligned_cols=42 Identities=24% Similarity=0.250 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 044131 582 AVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSN 623 (784)
Q Consensus 582 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 623 (784)
.+|..+..++...|+.+.|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468889999999999999999999999999999998887764
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.48 E-value=2.1 Score=48.04 Aligned_cols=336 Identities=13% Similarity=0.056 Sum_probs=181.1
Q ss_pred CCCCChhhHHh-----HHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---hHHHHHHHhcCCC--C
Q 044131 205 GTWLDSTSVAA-----VLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGE---VERAELLFRDIVR--P 274 (784)
Q Consensus 205 g~~pd~~t~~~-----ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~~~~--~ 274 (784)
|++.+..-|.. ++.-+...+.+..|.++-..+-..-... ..++.....-+.+..+ -+-+..+=+++.. .
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 55555554443 4555556667777777766553221122 5677777777776633 3334444455544 6
Q ss_pred CeeeHHHHHHHHHhCCCchHHHHHHHHHHHcC----CCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHH
Q 044131 275 DLISCNAMISGYTCNGKTESSLRLFRQLLASA----ERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLT 350 (784)
Q Consensus 275 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 350 (784)
+.++|..+..--.+.|+.+-|..+++.=...+ +-.+..-+...+.-+...|+.+...++.-++.+.-... .+
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s---~l- 581 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRS---SL- 581 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH---HH-
Confidence 67788888888888999998888876432221 11223334555666666777766666655554321100 00
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-CChhHHHHHHHHHHhCCChhHHHHHHH--HH----HhCCCCCCHHHHHHHHHHHh
Q 044131 351 ALSTVYSRLNEMEAARKLFDESSE-KSLASWNAMIAGYTQNGLTEEAISLFQ--EM----QASKVAPNPVTVSSILSACA 423 (784)
Q Consensus 351 ~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~--~m----~~~g~~pd~~t~~~ll~a~~ 423 (784)
+.-..+.-.|..+|...-. .|..+ +-+ +-+.++-.+++.-|. .. ...|..|+. ...-++|+
T Consensus 582 -----~~~l~~~p~a~~lY~~~~r~~~~~~---l~d-~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a 649 (829)
T KOG2280|consen 582 -----FMTLRNQPLALSLYRQFMRHQDRAT---LYD-FYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFA 649 (829)
T ss_pred -----HHHHHhchhhhHHHHHHHHhhchhh---hhh-hhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHh
Confidence 0011122223333333211 11110 111 112222222222221 10 012333333 33344455
Q ss_pred hhCchHHHHHH----------HHHHH-HcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q 044131 424 QLGAISLGKWV----------HELVK-SRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHG 492 (784)
Q Consensus 424 ~~~~~~~a~~i----------~~~~~-~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 492 (784)
+......+.+. .+.+. +.|....-.+.+--+.-+..-|+..+|.++-.+..-||-..|-.=+.+++..+
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~ 729 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIK 729 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhh
Confidence 44432221111 11111 12222222223333445566788899999988888888888888888899888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 044131 493 HGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFI 572 (784)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~ 572 (784)
++++-+++-+.+. .++-|.-...+|.+.|+.+||.+|+.+.. |. .-.+.+|.+.|++.+|.++-
T Consensus 730 kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l-------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 730 KWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GL-------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---Ch-------HHHHHHHHHhccHHHHHHHH
Confidence 8887666555443 14556667888999999999998887653 11 14678888899988888765
Q ss_pred H
Q 044131 573 K 573 (784)
Q Consensus 573 ~ 573 (784)
-
T Consensus 794 ~ 794 (829)
T KOG2280|consen 794 A 794 (829)
T ss_pred H
Confidence 3
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0046 Score=48.04 Aligned_cols=64 Identities=28% Similarity=0.324 Sum_probs=50.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHhcCCC
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHK-DTNLARVASEKLFELDP 612 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g-~~~~a~~~~~~~~~l~p 612 (784)
...|..+...+.+.|++++|+..|++. .+.|+ +.+|..+..++...| +.++|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456667777788888888888888765 34554 558888888999999 79999999999999888
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.3 Score=47.46 Aligned_cols=167 Identities=13% Similarity=0.055 Sum_probs=116.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--CChh--------HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 044131 349 LTALSTVYSRLNEMEAARKLFDESSE--KSLA--------SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSI 418 (784)
Q Consensus 349 ~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~--------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 418 (784)
+++|.+.|.-..-+++-...|+.-.. ..+. .-+.++..+.-.|.+.-.+.++.+.++...+-++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45555555555445555555544322 2222 3356667777778888889999999987666788888888
Q ss_pred HHHHhhhCchHHHHHHHHHHHHcCCCCchh-----hHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHH
Q 044131 419 LSACAQLGAISLGKWVHELVKSRNFESNIY-----VSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGL 490 (784)
Q Consensus 419 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~-----~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 490 (784)
.+.-.+.|+.+.+...++.+.+..-..+.. +.......|.-..++..|...|++++. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 888899999999999999887654333333 333344456677889999999988874 466666665556666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 044131 491 HGHGLEALQLFSEMLHSGIRPSGVTFL 517 (784)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~~pd~~t~~ 517 (784)
.|+..+|++..+.|.+. .|...+-.
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhh
Confidence 79999999999999984 55554444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.055 Score=48.91 Aligned_cols=92 Identities=12% Similarity=0.029 Sum_probs=69.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044131 452 ALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGL 528 (784)
Q Consensus 452 ~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 528 (784)
++..-+...|++++|.++|+-+. ..+..-|-.|..++...|++++|+..|....... +-|+..+-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 44445567788888888888765 2356678888888888888888888888888754 3456677778888888888
Q ss_pred HHHHHHHHHHhHHhcC
Q 044131 529 VREGDEIFQSMIHDHG 544 (784)
Q Consensus 529 ~~~a~~~~~~m~~~~~ 544 (784)
.+.|++.|+..+...+
T Consensus 119 ~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 119 VCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888888887765433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.11 Score=50.40 Aligned_cols=188 Identities=11% Similarity=-0.082 Sum_probs=131.7
Q ss_pred chhHHHHHHHHHHhCCCCChhhHhHHHHHhhCCCChhHHHHHhccCC--CCCcc--------hHHHHHHHHhcCCCchhH
Q 044131 22 QSQLTQTHAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSIP--KPDLF--------LFNVIIRGFSNNEMPKSS 91 (784)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~--~~~~~--------~~~~li~~~~~~g~~~~a 91 (784)
+..-+.+|+.+.... .+-+++|.+.|.-...+++-.+.|+.-. +..+. .-+.+++.+.-.|.+.-.
T Consensus 121 PFsmR~lhAe~~~~l----gnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS 196 (366)
T KOG2796|consen 121 PFSMRILHAELQQYL----GNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLS 196 (366)
T ss_pred cHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhh
Confidence 445678898886432 2337889888887777777777776533 22233 335566677777888888
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhC-----CCCchhHHHHHHHHhhcCCChHHHHHHh
Q 044131 92 ICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSG-----YGSDLFVGAALVDLYFKFSWVKSARKVF 166 (784)
Q Consensus 92 ~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~d~~~~~~li~~y~~~g~~~~A~~~f 166 (784)
+. ++...++...+.++.....+.+.--+.||.+.+...++.+.+.. .+....+.......|.-..++..|.+.|
T Consensus 197 ~d-~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~ 275 (366)
T KOG2796|consen 197 VD-AYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFF 275 (366)
T ss_pred HH-HHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHH
Confidence 88 88888886666777777888888889999999999999887653 3333344444445566678888999999
Q ss_pred ccCCCC---CcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHH
Q 044131 167 DKMPEK---DTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVL 217 (784)
Q Consensus 167 ~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll 217 (784)
++++.+ |.+.-|.-.-+..-.|+..+|++..+.|.+ ..|...+-.+++
T Consensus 276 ~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~---~~P~~~l~es~~ 326 (366)
T KOG2796|consen 276 TEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ---QDPRHYLHESVL 326 (366)
T ss_pred hhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc---cCCccchhhhHH
Confidence 988865 455556555555566889999999999985 456666555443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.013 Score=61.85 Aligned_cols=64 Identities=13% Similarity=-0.085 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcch---HHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 580 GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGY---HVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 580 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+...|..+..++...|++++|...++++++++|+++.. |.+++.+|+..|+.++|...++...+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35577777777777777777777777777777777643 77777777777777777777666554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.038 Score=59.09 Aligned_cols=80 Identities=13% Similarity=0.068 Sum_probs=44.3
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhc
Q 044131 280 NAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRL 359 (784)
Q Consensus 280 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~ 359 (784)
.++|..|.+.|..++++.+++.=..-|+-||.+|++.++..+.+.|++..|.++...|...+...+..++..-+..+.++
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 35555555555555555555555555566666666666666666666666655555555555444444444444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.3 Score=48.77 Aligned_cols=52 Identities=12% Similarity=-0.023 Sum_probs=30.7
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCh---hH---HHHHHHHHHhCCChhHHHHHHHHHHhC
Q 044131 355 VYSRLNEMEAARKLFDESSEKSL---AS---WNAMIAGYTQNGLTEEAISLFQEMQAS 406 (784)
Q Consensus 355 ~y~~~g~~~~A~~~f~~~~~~~~---~~---~~~li~~~~~~g~~~~A~~l~~~m~~~ 406 (784)
.+.+.|++++|.+.|+.+....+ .. .-.+..+|.+.+++++|...|++..+.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34556777777777776653211 11 223445566677777777777777654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.075 Score=44.63 Aligned_cols=81 Identities=20% Similarity=0.202 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCC--------HHHHHHHHHHhHHhcCCCCCcc
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGI-RPSGVTFLSVLYACSHAGL--------VREGDEIFQSMIHDHGFKPLAE 550 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~a~~~~g~--------~~~a~~~~~~m~~~~~~~p~~~ 550 (784)
+-...|..+...|++.....+|+.++..|+ -|+..+|+.+|.+-.+... +-+.+.+|+.|+.. +++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 334456666667999999999999999999 8999999999988766432 44567788888754 7889999
Q ss_pred hHHHHHHHHHh
Q 044131 551 HYACMVDILGR 561 (784)
Q Consensus 551 ~~~~lv~~l~r 561 (784)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99888877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.086 Score=50.04 Aligned_cols=116 Identities=19% Similarity=0.244 Sum_probs=76.5
Q ss_pred CCCHHHHHHHHHHHhh-----hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHH
Q 044131 409 APNPVTVSSILSACAQ-----LGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNT 483 (784)
Q Consensus 409 ~pd~~t~~~ll~a~~~-----~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~ 483 (784)
..|..+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=| |.+- -..+|+.+ |
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~-------F-- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE-------F-- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-------h--
Confidence 3455666666666543 35566666677788888888888899988887765 3322 11111111 1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHh
Q 044131 484 MISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGL-VREGDEIFQSM 539 (784)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~-~~~a~~~~~~m 539 (784)
. -...+-+-|++++++|...|+-||..|+..|+..+.+.+. +.+.++..--|
T Consensus 113 --~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 113 --M--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred --c--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 0 1124567799999999999999999999999999877664 23334443334
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.38 Score=48.02 Aligned_cols=174 Identities=11% Similarity=0.031 Sum_probs=100.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--CCH-HH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-
Q 044131 453 LIDMYAKCGNIVEARELFDLMSH--KSE-VT---WNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSH- 525 (784)
Q Consensus 453 Li~~y~k~g~~~~A~~~f~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~- 525 (784)
....+.+.|++++|.+.|+.+.. |+. .. .-.++.+|-+.+++++|+..|++..+.-..-..+-+...+.+.++
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34455667888888888887763 222 11 233456667778888888888888774322122333333333321
Q ss_pred -cC---------------C---HHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 044131 526 -AG---------------L---VREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGA 586 (784)
Q Consensus 526 -~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ 586 (784)
.+ + ..+|...|+.+++.| |+ +....+|...+..+.-.--..- -.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~la~~e-~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRLAKYE-LS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHHHHHH-HH
Confidence 00 1 123334444444332 32 3333444433322210000000 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 587 LLGACMIHKDTNLARVASEKLFELDPENV---GYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...-|.+.|++.-|..-++.+++--|+.+ .....+.+.|...|.-++|.++.+.+..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 33457788999999999999998777654 4567888999999999999998876643
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.16 E-value=2.7 Score=46.11 Aligned_cols=182 Identities=15% Similarity=0.114 Sum_probs=127.5
Q ss_pred chhhHhHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044131 446 NIYVSTALIDMYAKCGNIVEARELFDLMSHK---SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYA 522 (784)
Q Consensus 446 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 522 (784)
+...|..-++.-.+.|+.+.+.-.|+...-| =...|--.+.-....|+.+-|-.++....+--++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567778888888899999999999887643 2235555555555558888888877776664444444443333344
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKAL---EFIKGL-AVEPGPAVWGALLG-----ACM 592 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~---~~~~~m-~~~p~~~~~~~ll~-----a~~ 592 (784)
+...|+.+.|..+++.+.+++ |+ ++.-.--+...-|.|.++.+. +++... +.+-+..+...+.- -+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 677899999999999998764 66 334444566778899999888 555543 23333333333322 345
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 593 IHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERD 630 (784)
Q Consensus 593 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 630 (784)
..++.+.|..++.++.+..|++...|..+.++....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 67899999999999999999999999999998777663
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.12 Score=45.02 Aligned_cols=106 Identities=18% Similarity=0.091 Sum_probs=64.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCC---chhhHhHHHHHH
Q 044131 383 MIAGYTQNGLTEEAISLFQEMQASKVAPN--PVTVSSILSACAQLGAISLGKWVHELVKSRNFES---NIYVSTALIDMY 457 (784)
Q Consensus 383 li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~---~~~~~~~Li~~y 457 (784)
+..++-..|+.++|+.+|++....|.... ...+..+-+++..+|++++|..+++...... +. +..+...+...+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 34556677888888888888888776554 2345556667777888888888887776542 21 222222333455
Q ss_pred HhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 044131 458 AKCGNIVEARELFDLMSHKSEVTWNTMISGYG 489 (784)
Q Consensus 458 ~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 489 (784)
...|+.++|.+.+-...-++...|.--|..|+
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777665544344444444444443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.33 Score=44.63 Aligned_cols=129 Identities=13% Similarity=0.049 Sum_probs=87.5
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCC-CCcchHHHHHHHHHhcCCHHHHHHHHHhCC------CCCCH
Q 044131 509 IRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFK-PLAEHYACMVDILGRAGQLEKALEFIKGLA------VEPGP 581 (784)
Q Consensus 509 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~------~~p~~ 581 (784)
..|....-..|..+....|+..||...|++... |+- -|....-.+..+....++..+|...+++.. -.||
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd- 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD- 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC-
Confidence 355555566667777777777777777776653 433 335555556666666777777777776641 2333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 582 AVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 582 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
..-.+..++...|..+.|+..++.++.--|+ +..-...+..++++|+.+++..-...+-
T Consensus 162 -~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 162 -GHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred -chHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3344667788889999999999999988876 5556667788899998888776554443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.035 Score=55.95 Aligned_cols=92 Identities=15% Similarity=0.101 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---cchHHHHHH
Q 044131 552 YACMVDILGRAGQLEKALEFIKGLA-VEPG----PAVWGALLGACMIHKDTNLARVASEKLFELDPEN---VGYHVLLSN 623 (784)
Q Consensus 552 ~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~ 623 (784)
|..-++++.+.|++++|...|+.+. ..|+ +.++..|..++...|+++.|...++++++..|++ +..+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 4444444444566666665555441 2222 2345556666667777777777777777666554 334455566
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 044131 624 IYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 624 ~y~~~g~~~~a~~~~~~m~~ 643 (784)
+|...|++++|.++++...+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777665543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.015 Score=45.70 Aligned_cols=65 Identities=22% Similarity=0.305 Sum_probs=52.4
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHH
Q 044131 557 DILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 621 (784)
..|.+.+++++|.+.++++ ...| ++..|......+...|+++.|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4677888999999998887 3555 455788888888999999999999999999999887665443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.09 E-value=3.3 Score=46.49 Aligned_cols=117 Identities=14% Similarity=0.125 Sum_probs=92.5
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 044131 508 GIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGAL 587 (784)
Q Consensus 508 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~l 587 (784)
|..-...|.+-.+.-+.+.|...+|.++-.... .||...|--=+.+|+..+++++-+++-+++. .+.-|.-.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhH
Confidence 334455566777888889999999998876653 5888888888899999999999999988863 24567778
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQV 640 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 640 (784)
..+|.+.|+.++|....-+.-.+ .-...+|.+.|++.+|.+.--.
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 89999999999999887665332 2577889999999999987543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=1.1 Score=49.17 Aligned_cols=200 Identities=15% Similarity=0.115 Sum_probs=104.3
Q ss_pred hHHhHHHHHhcccchhHHHHH--HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhC
Q 044131 212 SVAAVLPAVAEVQELRLGMEI--QCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCN 289 (784)
Q Consensus 212 t~~~ll~a~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~ 289 (784)
.|...=+||.+.+++.--+-+ +..+.+.|-.|+... +.+.++-.|.+.+|-++|.+ +
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~ 658 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------S 658 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------c
Confidence 344455566665555443333 344556666666543 34556667888888888754 5
Q ss_pred CCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHH
Q 044131 290 GKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLF 369 (784)
Q Consensus 290 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 369 (784)
|.-..|+++|..|+-- -..+-+...|..++-+.+...-... ..++.--.+-..|....|+.++|..+.
T Consensus 659 G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~ 726 (1081)
T KOG1538|consen 659 GHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC 726 (1081)
T ss_pred CchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh
Confidence 6667777777666421 0111222233333222222111100 001111122334444455555554432
Q ss_pred hhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhh
Q 044131 370 DESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYV 449 (784)
Q Consensus 370 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 449 (784)
..+|-.+-+.++=+++- ..+..++..+-.-+-++..+..|-+||..+-..
T Consensus 727 ------------------~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------- 776 (1081)
T KOG1538|consen 727 ------------------GDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-------- 776 (1081)
T ss_pred ------------------hcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------
Confidence 22333333333333322 223445555555555667777788887766532
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCC
Q 044131 450 STALIDMYAKCGNIVEARELFDLMSH 475 (784)
Q Consensus 450 ~~~Li~~y~k~g~~~~A~~~f~~~~~ 475 (784)
.+++++....+++.+|..+-++.++
T Consensus 777 -ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 777 -KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred -HHHhhheeecccchHhHhhhhhCcc
Confidence 3678888889999999999888885
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.11 Score=47.44 Aligned_cols=107 Identities=19% Similarity=0.109 Sum_probs=71.3
Q ss_pred HHccCCHHHHHHHHHHhHHhcCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGF--KPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLA 600 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a 600 (784)
....|+.+.+.+.++.+..-|.= -|+... ..........++++- ..+...++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHH
Confidence 34566777777777776654421 122111 122223333333321 23566777788899999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 601 RVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 601 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...+++++..+|.+...|..+..+|...|+..+|.++++.++.
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987753
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.07 Score=55.23 Aligned_cols=84 Identities=31% Similarity=0.234 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCE
Q 044131 581 PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGT 660 (784)
Q Consensus 581 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~ 660 (784)
..++..|...+.+.+++..|....+++++++|+|.-....-+.+|...|.++.|...++++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k----------------- 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK----------------- 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-----------------
Confidence 346777888888999999999999999999999999999999999999999999999998876
Q ss_pred EEEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 044131 661 PHVFTSGDQLHPQSTAIYAMLEKLNGKMRE 690 (784)
Q Consensus 661 ~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 690 (784)
..|..+.|...|..|..++++
T Consensus 320 ---------~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 320 ---------LEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ---------hCCCcHHHHHHHHHHHHHHHH
Confidence 346677888888777777665
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.13 Score=51.84 Aligned_cols=33 Identities=12% Similarity=-0.043 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
.|..+...+...|+.+.|...++++++..|++.
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 444455566678888888888888888888764
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.065 Score=55.00 Aligned_cols=256 Identities=13% Similarity=0.024 Sum_probs=143.3
Q ss_pred HHhCCChhHHHHHHHHHHhCCCC---CCHHHHHHHHHHHhhhCchHHHHHHHHHHH--Hc--CC-CCchhhHhHHHHHHH
Q 044131 387 YTQNGLTEEAISLFQEMQASKVA---PNPVTVSSILSACAQLGAISLGKWVHELVK--SR--NF-ESNIYVSTALIDMYA 458 (784)
Q Consensus 387 ~~~~g~~~~A~~l~~~m~~~g~~---pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~--~~--g~-~~~~~~~~~Li~~y~ 458 (784)
+++.|+.+..+.+|+...+.|-. .=...|+.+-++|.-++++++|.++|..=+ .. |- .-.......|.+.+-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 56667777777777777665521 112345555566666677777777665322 11 00 001112222333344
Q ss_pred hcCCHHHHHHHHhhcC-------C--CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH---
Q 044131 459 KCGNIVEARELFDLMS-------H--KSEVTWNTMISGYGLHGH--------------------GLEALQLFSEMLH--- 506 (784)
Q Consensus 459 k~g~~~~A~~~f~~~~-------~--~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~--- 506 (784)
-.|.+++|.-.-.+-. . -....+-.+...|-..|+ .+.|.++|.+=++
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555543322111 0 011233334444433331 2234444443221
Q ss_pred -CCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHh---HHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-----
Q 044131 507 -SGI-RPSGVTFLSVLYACSHAGLVREGDEIFQSM---IHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL----- 575 (784)
Q Consensus 507 -~g~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m----- 575 (784)
.|= -.-...|..|...|.-.|+++.|....+.- .+++|-... ...++.+...+.-.|+++.|.+.++..
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 110 001123555666666678899888776542 334443332 456778888888899999999888753
Q ss_pred CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC----C--CCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 576 AV---EPGPAVWGALLGACMIHKDTNLARVASEKLFEL----D--PENVGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 576 ~~---~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l----~--p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
.+ ...+....+|..+|....+++.|+..+.+-+.+ + -.....+-.|+|.|...|..+.|..+.+.-.
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 11 123446778888888888899999887765542 2 2334578889999999999999988765543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.092 Score=45.05 Aligned_cols=90 Identities=18% Similarity=0.110 Sum_probs=73.8
Q ss_pred HHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHhcCC
Q 044131 557 DILGRAGQLEKALEFIKGL-AV-EPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENV----GYHVLLSNIYSAERD 630 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~----~~~~~l~~~y~~~g~ 630 (784)
-+++..|++++|++.|.+. .+ +.++..|+.-..+++.+|+.+.|..-+++++++.-+.. ..|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3577888999999988775 23 44678999999999999999999999999999753322 368899999999999
Q ss_pred hHHHHHHHHHHHhCCC
Q 044131 631 YLQAATVRQVVKKRKL 646 (784)
Q Consensus 631 ~~~a~~~~~~m~~~~~ 646 (784)
-+.|..-|+...+-|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999988777553
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.62 E-value=1.7 Score=45.23 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcch--------HHHHHHHHHhcCChHHHHH
Q 044131 584 WGALLGACMIHKDTNLARVASEKLFELDPENVGY--------HVLLSNIYSAERDYLQAAT 636 (784)
Q Consensus 584 ~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~--------~~~l~~~y~~~g~~~~a~~ 636 (784)
|-.+++.-+...+.+........++...|+-... +-..++.|...++.++..+
T Consensus 375 ~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 375 WYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred HHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 4455555555556666666666666666654322 2234445555555544443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.074 Score=54.62 Aligned_cols=127 Identities=14% Similarity=0.032 Sum_probs=90.2
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHH----cCCC-CchhhHhHHHHHHHhcCCHHHHHHHHhhcC-------CCC--HH
Q 044131 414 TVSSILSACAQLGAISLGKWVHELVKS----RNFE-SNIYVSTALIDMYAKCGNIVEARELFDLMS-------HKS--EV 479 (784)
Q Consensus 414 t~~~ll~a~~~~~~~~~a~~i~~~~~~----~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-------~~~--~~ 479 (784)
.|..+-+.|.-+|+++.+...|+.-.+ .|-. .....+..|.+.|.-.|+++.|.+.|+... .+. ..
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555556667899999988876442 2211 134567778888999999999999887543 333 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHS-----GIRPSGVTFLSVLYACSHAGLVREGDEIFQSMI 540 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 540 (784)
+.-+|...|.-...+++|+.++.+-+.- ...-....+.+|..++...|..++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6677888888888999999998875431 112234578899999999999999988776554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.39 E-value=2.8 Score=40.58 Aligned_cols=193 Identities=21% Similarity=0.161 Sum_probs=127.6
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMS-----HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLY 521 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 521 (784)
..........+...+.+..+...+.... ......+..+...+...+.+.++++.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4555666666777777777777666543 23445666666667777777788888877776433331 11222222
Q ss_pred -HHHccCCHHHHHHHHHHhHHhcCCCC----CcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHh
Q 044131 522 -ACSHAGLVREGDEIFQSMIHDHGFKP----LAEHYACMVDILGRAGQLEKALEFIKGLA-VEPG--PAVWGALLGACMI 593 (784)
Q Consensus 522 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~--~~~~~~ll~a~~~ 593 (784)
++...|..+++...|..... ..| ....+......+...++.++|...+.+.. ..|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67778888888888887742 233 23333334444566778888888877652 3333 5677788888888
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 594 HKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 594 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.++.+.+...+..+++..|.....+..++..+...|.++++.........
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888887666677777777777778888877665544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.13 Score=45.18 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=31.4
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 044131 544 GFKPLAEHYACMVDILGRAGQLEKALEFIKGL----AVEPGPAVWGALLGACMI 593 (784)
Q Consensus 544 ~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m----~~~p~~~~~~~ll~a~~~ 593 (784)
.+.|+.....+++.+|+..|++..|+++++.. +++-+..+|..|+.=+..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44566666677777777777777777666543 444456677777764443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.04 E-value=1.3 Score=42.89 Aligned_cols=144 Identities=19% Similarity=0.133 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRP--SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVD 557 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 557 (784)
.+-.....+.+.|++.+|++.|+++...-... -......+..++...|++++|...|+..++.+.-.|... +.....
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~ 85 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYML 85 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHH
Confidence 33444556677889999999999888752211 123455677788888999999999888887764444321 111111
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc-----------------chHHH
Q 044131 558 ILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENV-----------------GYHVL 620 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~-----------------~~~~~ 620 (784)
+++......... ...+..+....|...++.+++.-|+++ ..-..
T Consensus 86 g~~~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ 146 (203)
T PF13525_consen 86 GLSYYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 111110000000 001222233445555555555555543 22345
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 044131 621 LSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 621 l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++..|.+.|+|..|..-++.+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHH
Confidence 68889999999999998888765
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.75 Score=49.14 Aligned_cols=141 Identities=15% Similarity=0.173 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHc----------cCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHh
Q 044131 494 GLEALQLFSEML-HSGIRPSGVTFLSVLYACSH----------AGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGR 561 (784)
Q Consensus 494 ~~~A~~~~~~m~-~~g~~pd~~t~~~ll~a~~~----------~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r 561 (784)
.+.|+.+|.+.. .+.+.|+...-...+.-|.. .....+|.+.-+..+ .+.|+ ......+..+++-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHh
Confidence 456777888877 22356665432222222211 223455666666555 44453 5566666777777
Q ss_pred cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHH--HHHHHHhcCChHHHHHH
Q 044131 562 AGQLEKALEFIKGL-AVEPGPA-VWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVL--LSNIYSAERDYLQAATV 637 (784)
Q Consensus 562 ~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~--l~~~y~~~g~~~~a~~~ 637 (784)
.|+++.|..+|++. .+.||.. +|......+...|+.++|.+..+++++++|.....-++ ..++|...+ .++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 88899999999887 3677644 88888888888999999999999999999976655443 344566554 5666665
Q ss_pred H
Q 044131 638 R 638 (784)
Q Consensus 638 ~ 638 (784)
+
T Consensus 430 ~ 430 (458)
T PRK11906 430 Y 430 (458)
T ss_pred H
Confidence 4
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.80 E-value=9.3 Score=43.36 Aligned_cols=49 Identities=8% Similarity=0.030 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchH
Q 044131 246 YVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTES 294 (784)
Q Consensus 246 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~ 294 (784)
.++..+|+.|.-.|++++|-...-.|...+..-|.-.+.-+...++...
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 4556677777778888888888877777777777777777776666544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.34 Score=42.63 Aligned_cols=52 Identities=6% Similarity=0.099 Sum_probs=45.9
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHH
Q 044131 508 GIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDIL 559 (784)
Q Consensus 508 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l 559 (784)
...|+..+..+++.+++..|++..|.++.+...+.|+++-+...|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999888888888877643
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.048 Score=43.45 Aligned_cols=59 Identities=17% Similarity=0.072 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcC----CCC---CcchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLFEL----DPE---NVGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~~l----~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
+++.+...+...|++++|+..+++++++ .|+ -...+..++.+|...|++++|.+.++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5566666666777777777776666643 222 2346777888888888888888877654
|
... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.37 Score=52.52 Aligned_cols=131 Identities=21% Similarity=0.209 Sum_probs=87.1
Q ss_pred HHcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHH
Q 044131 489 GLHGHGLEALQLFSE-MLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEK 567 (784)
Q Consensus 489 ~~~g~~~~A~~~~~~-m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~e 567 (784)
...|+++++.++.+. -.-..++ ..-...++.-+.+.|..+.|+++-+.-..+ -++..+.|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCHHH
Confidence 446777776666541 1111122 333566777777888888888776543322 366778999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044131 568 ALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 568 A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 645 (784)
|.+..++.. +...|..|...+..+||++.|+.++++. ..+..|.-+|...|+-+.-.++-+....+|
T Consensus 337 A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 999887753 7889999999999999999999999985 356778889999999888777776666544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.55 E-value=9.8 Score=42.48 Aligned_cols=123 Identities=17% Similarity=0.241 Sum_probs=57.0
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCHH---HHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044131 454 IDMYAKCGNIVEARELFDLMSHKSEV---TWNTMISGY----GLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHA 526 (784)
Q Consensus 454 i~~y~k~g~~~~A~~~f~~~~~~~~~---~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 526 (784)
|.++-|.|+.-+|.+++.+|.++... .+--+-..| .-..+..++++-.++....|...|... +...
T Consensus 930 Ie~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles 1002 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLES 1002 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhh
Confidence 56777888877777777777632111 111111111 111223444444444444554333221 1223
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHH
Q 044131 527 GLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA----VEPGPAVWGAL 587 (784)
Q Consensus 527 g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~----~~p~~~~~~~l 587 (784)
|...++-.+.+..-+ -....|+-.|..--.+.|+.+.|+..--.+. +-|-..+|.-|
T Consensus 1003 ~~l~~~~ri~~n~Wr----gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySll 1063 (1189)
T KOG2041|consen 1003 GLLAEQSRILENTWR----GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLL 1063 (1189)
T ss_pred hhhhhHHHHHHhhhh----hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHH
Confidence 333333333332111 1124455556666677888888876643331 33444455444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.25 Score=48.38 Aligned_cols=99 Identities=13% Similarity=0.148 Sum_probs=80.8
Q ss_pred HHHHHhhcC--CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----------
Q 044131 466 ARELFDLMS--HKSEVTWNTMISGYGLH-----GHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAG----------- 527 (784)
Q Consensus 466 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g----------- 527 (784)
.+..|..+. ++|-.+|-+++..|..+ +..+-....++.|.+-|+.-|..+|..||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 456677777 78889999999988765 556666777889999999999999999999876533
Q ss_pred -----CHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCH
Q 044131 528 -----LVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQL 565 (784)
Q Consensus 528 -----~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~ 565 (784)
.-+=+..++++| +.+|+.||.++-..++.+++|.|..
T Consensus 133 ~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhcccccc
Confidence 223478899999 5789999999999999999999864
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.38 E-value=7.5 Score=40.42 Aligned_cols=220 Identities=16% Similarity=0.163 Sum_probs=136.3
Q ss_pred HhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHhh---hCc
Q 044131 357 SRLNEMEAARKLFDESSEK---SLASWNAMIAGYTQNGLTEEAISLFQEMQASK-VAPNPV--TVSSILSACAQ---LGA 427 (784)
Q Consensus 357 ~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~--t~~~ll~a~~~---~~~ 427 (784)
-+.|+.+.|+..-+..-.. -.-.|.+.+...++.|+++.|+++.+.-+... +.+|.. .-..+|.+-+. ..+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 4567777777776654432 22367888999999999999999998766543 445542 22333433222 124
Q ss_pred hHHHHHHHHHHHHcCCCCchhh-HhHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044131 428 ISLGKWVHELVKSRNFESNIYV-STALIDMYAKCGNIVEARELFDLMSH--KSEVTWNTMISGYGLHGHGLEALQLFSEM 504 (784)
Q Consensus 428 ~~~a~~i~~~~~~~g~~~~~~~-~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (784)
...++..-.+..+ +.||..- .-.-...|.+.|++.++-.+++.+-+ |....|.. -.+++.|+ .++.-+++.
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l--Y~~ar~gd--ta~dRlkRa 318 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALL--YVRARSGD--TALDRLKRA 318 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH--HHHhcCCC--cHHHHHHHH
Confidence 5555555554444 3444322 22334678899999999999888763 44444432 22344444 444444443
Q ss_pred HH-CCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHh-cCCHHHHHHHHHhCCCCCCH
Q 044131 505 LH-SGIRPSG-VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGR-AGQLEKALEFIKGLAVEPGP 581 (784)
Q Consensus 505 ~~-~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r-~g~~~eA~~~~~~m~~~p~~ 581 (784)
.. ..++||. .+...+..+-...|++..|..--+... ...|....|..|.|.-.- .|+-.++..++-+..-.|..
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 32 2256654 566677778888899888887776664 567888888888887654 48888888888765333333
Q ss_pred HHHH
Q 044131 582 AVWG 585 (784)
Q Consensus 582 ~~~~ 585 (784)
..|.
T Consensus 396 PaW~ 399 (531)
T COG3898 396 PAWT 399 (531)
T ss_pred Cccc
Confidence 3343
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.27 E-value=8.8 Score=40.80 Aligned_cols=353 Identities=13% Similarity=0.054 Sum_probs=175.2
Q ss_pred hHHHHHhcccchhHHHHHHHHHHHhC----CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCC
Q 044131 215 AVLPAVAEVQELRLGMEIQCLGLKLG----FHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNG 290 (784)
Q Consensus 215 ~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g 290 (784)
.....+...|.+.+|+.++..++..= ...+..+||.++-++++.=-++.-. .+...=..-|--||-.|.+.=
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e----~~s~dl~pdyYemilfY~kki 208 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKE----SMSSDLYPDYYEMILFYLKKI 208 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHH----hcccccChHHHHHHHHHHHHH
Confidence 34445566666666666666665543 3478888888888877653222111 111111122445555554321
Q ss_pred CchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCC--CChhHHHHHHHHHHHhCCCcch-HHHHHHHHHHHhcCCHHHHHH
Q 044131 291 KTESSLRLFRQLLASAERVNSSTIVGLIPVFYPF--GHLHLTNCIHSFCLKSGIVSNS-SVLTALSTVYSRLNEMEAARK 367 (784)
Q Consensus 291 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~i~~~~~~~g~~~~~-~~~~~Li~~y~~~g~~~~A~~ 367 (784)
.. +++-.=..+.|...-+..++....-. ..+.--.+++..-.+.-+.|+. -+...|++-+.+ +.+++..
T Consensus 209 ~~------~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~ 280 (549)
T PF07079_consen 209 HA------FDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGH 280 (549)
T ss_pred HH------HhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHH
Confidence 11 11100011233333333333332221 1223333444444444444443 334445555544 4444444
Q ss_pred HHhhcC--------CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH----------HHHHHHH-HHhhhCch
Q 044131 368 LFDESS--------EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPV----------TVSSILS-ACAQLGAI 428 (784)
Q Consensus 368 ~f~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----------t~~~ll~-a~~~~~~~ 428 (784)
+-+.+. ++=+.++..++...++.++..+|-+.+.-+.. +.|+.. ++..++. -=....++
T Consensus 281 ~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tkl 358 (549)
T PF07079_consen 281 FCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKL 358 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHH
Confidence 433322 22334778888888888998888887776654 234332 1111111 00011122
Q ss_pred HHHHHHHHHHHHcCCCCchhhH--hHHHHHHHhcCC-HHHHHHHHhhcC---CCCHHHHHHHH----HHHHHc---CCHH
Q 044131 429 SLGKWVHELVKSRNFESNIYVS--TALIDMYAKCGN-IVEARELFDLMS---HKSEVTWNTMI----SGYGLH---GHGL 495 (784)
Q Consensus 429 ~~a~~i~~~~~~~g~~~~~~~~--~~Li~~y~k~g~-~~~A~~~f~~~~---~~~~~~~~~li----~~~~~~---g~~~ 495 (784)
..-..++..+....+..-.-+. .--..-|-+.|. -+.|.++++.+. .-|..+-|... .+|.+. ....
T Consensus 359 r~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~ 438 (549)
T PF07079_consen 359 RDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIP 438 (549)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 2223334444433322211110 011122344454 677788877665 34544444332 233332 1123
Q ss_pred HHHHHHHHHHHCCCCCCHH----HHHHHHHH--HHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 044131 496 EALQLFSEMLHSGIRPSGV----TFLSVLYA--CSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKAL 569 (784)
Q Consensus 496 ~A~~~~~~m~~~g~~pd~~----t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~ 569 (784)
+-+.+-+-..+.|+.|-.+ .-+.|..| +...|++.++.-+-.-+. .+.|++.+|..+.-.+....+++||.
T Consensus 439 rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~ 515 (549)
T PF07079_consen 439 RLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAW 515 (549)
T ss_pred HHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 3333334445677777433 23333333 455788888877666554 67888888888888888888899999
Q ss_pred HHHHhCCCCCCHHHHHH
Q 044131 570 EFIKGLAVEPGPAVWGA 586 (784)
Q Consensus 570 ~~~~~m~~~p~~~~~~~ 586 (784)
+++...| |+..+|++
T Consensus 516 ~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 516 EYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHhCC--CchhhHHH
Confidence 9998875 46666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.24 E-value=4.7 Score=39.66 Aligned_cols=143 Identities=17% Similarity=0.115 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHH
Q 044131 478 EVTWNTMISGYGLHGHGLEALQLFSEMLHSGI--RPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACM 555 (784)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 555 (784)
+..|-.=+..-.+.|++++|.+.|+.+..+-. +-...+...++.|..+.++.++|....++..+.++-.|++. |...
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Y 112 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYY 112 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHH
Confidence 33444444555677899999999998886521 11345667777788888899999998888887777666643 4444
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-----------------cch
Q 044131 556 VDILGRAGQLEKALEFIKGLA-VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPEN-----------------VGY 617 (784)
Q Consensus 556 v~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~-----------------~~~ 617 (784)
+.+++. +...+ ...|.. -...|...++.++..-|++ .+.
T Consensus 113 lkgLs~----------~~~i~~~~rDq~-------------~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~ 169 (254)
T COG4105 113 LKGLSY----------FFQIDDVTRDQS-------------AARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH 169 (254)
T ss_pred HHHHHH----------hccCCccccCHH-------------HHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence 444441 11111 011111 0112222223333333322 344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 618 HVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 618 ~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
-..+++.|.+.|.|..|..-++.|.+.
T Consensus 170 Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 170 EMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 557889999999999999999888773
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.18 E-value=3.5 Score=35.89 Aligned_cols=140 Identities=13% Similarity=0.076 Sum_probs=80.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 044131 489 GLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKA 568 (784)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA 568 (784)
.-.|..++..++..+...+ .+..-++.++.--..+-+-+-..+.++++-+-+.+.| +|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~--------------C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK--------------CGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG---------------S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh--------------hcchHHH
Confidence 3457777777777777653 2333344444433333444555555665544333322 3333333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 044131 569 LEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLA 647 (784)
Q Consensus 569 ~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 647 (784)
...+-.+. .+..-..--+.+...+|.-++-..++..+++-+..+|...+-++++|.+.|...++.++++..-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33333221 122334455677788999999999999998766677889999999999999999999999999998886
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.07 E-value=1.9 Score=38.75 Aligned_cols=66 Identities=24% Similarity=0.374 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044131 514 VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRA-GQLEKALEFIKGLAVEPGPAVWGALLGACM 592 (784)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~-g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~ 592 (784)
.....++..|...+.++++..++..+. -|...++.+... ++.+.|.+++++- .++..|..++..|.
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k~~----------~~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKKDG----------NFKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHhhc----------CHHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 334446667777777777777766552 123334444444 6777777777762 35557777766654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.44 Score=43.35 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=35.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH----HhcCCCCCcch
Q 044131 481 WNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMI----HDHGFKPLAEH 551 (784)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 551 (784)
...++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.+.|+.+. ++.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555555666666666666666532 3345556666666666666666666665542 23466666443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.084 Score=34.07 Aligned_cols=33 Identities=27% Similarity=0.256 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 582 AVWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 582 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
.+|..+..++...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 478888999999999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.16 Score=40.43 Aligned_cols=26 Identities=15% Similarity=-0.082 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
++..+...+...|+++.|+..+++++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444555555555544444
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=1.7 Score=46.43 Aligned_cols=61 Identities=11% Similarity=0.059 Sum_probs=32.1
Q ss_pred chhhHhHHHHHHHhcCCHHHHHHHHhhcC--CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 446 NIYVSTALIDMYAKCGNIVEARELFDLMS--HKSE----VTWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 446 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
+...++.+..+|.+.|++++|...|++.. .|+. .+|..+..+|+..|+.++|++.+++.++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555555555533 2331 2355555555555555555555555554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.12 Score=33.30 Aligned_cols=33 Identities=33% Similarity=0.276 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 582 AVWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 582 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
..|..+...+...|+++.|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467788888899999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.72 Score=46.23 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 477 SEVTWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
|...|-.|...|..+|+++.|..-|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 444555555555555555555555555554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.79 E-value=1.7 Score=46.56 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=70.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHH--HHHHHHHHHH
Q 044131 517 LSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPA--VWGALLGACM 592 (784)
Q Consensus 517 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~--~~~~ll~a~~ 592 (784)
..+...+-+.|..+||.+.|+.|.+++...-.......|+..|...+++.++..++.+-. .-|... .|++.|-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 346666778899999999999998765332334466678899999999999999988864 134433 5665554444
Q ss_pred hcCCH---------------HHHHHHHHHHhcCCCCCcchH
Q 044131 593 IHKDT---------------NLARVASEKLFELDPENVGYH 618 (784)
Q Consensus 593 ~~g~~---------------~~a~~~~~~~~~l~p~~~~~~ 618 (784)
.-++. ..|.++..++.+.+|..|.+.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 44431 235678889999999877543
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.88 Score=48.63 Aligned_cols=114 Identities=10% Similarity=0.058 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHH---------hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 044131 528 LVREGDEIFQSMIHDHGFKPL-AEHYACMVDILG---------RAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHK 595 (784)
Q Consensus 528 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~---------r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g 595 (784)
..+.|..+|.+......+.|+ ...|..+...+. ......+|.++.++. .+.| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356788889888755577887 455555444332 123445667776665 3455 6677777777778888
Q ss_pred CHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 596 DTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 596 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
+.+.|...++++..++|+.+..+...+.+..-+|+.++|.+..+.-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999988773
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.65 E-value=7.1 Score=37.63 Aligned_cols=196 Identities=20% Similarity=0.143 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhhhCchHHHHHHHHHHHHc-CCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--CC-HHHHHHHHH-H
Q 044131 413 VTVSSILSACAQLGAISLGKWVHELVKSR-NFESNIYVSTALIDMYAKCGNIVEARELFDLMSH--KS-EVTWNTMIS-G 487 (784)
Q Consensus 413 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~-~~~~~~li~-~ 487 (784)
..+......+...+.+..+...+...... ........+..+...+...+....+...+..... ++ ...+..... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444444444555555555544444432 2233344455555556666666666666665553 21 122333333 6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC--cchHHHHHHHHHh
Q 044131 488 YGLHGHGLEALQLFSEMLHSGIRP----SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL--AEHYACMVDILGR 561 (784)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~r 561 (784)
+...|+.++|...|++... ..| ....+......+...+..+++...+....+. .|+ ...+..+...+..
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHH
Confidence 7788888888888888855 333 2334444444467788888888888887642 333 5667777888888
Q ss_pred cCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 562 AGQLEKALEFIKGLA-VEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 562 ~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
.|.+++|...+.... ..|+ ...+..+...+...++.+.+...+++.++..|.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888888888887763 4454 455666666666677899999999999998887
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.64 E-value=2 Score=46.05 Aligned_cols=218 Identities=16% Similarity=0.108 Sum_probs=113.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHH---HH
Q 044131 492 GHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLE---KA 568 (784)
Q Consensus 492 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~---eA 568 (784)
.+.+.-+++-++.++ +.||-.+-..+| |-..+..+.++.++|++..+.-. . .|++....+ ..
T Consensus 182 Rnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE-----~-------~lg~s~~~~~~g~~ 246 (539)
T PF04184_consen 182 RNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE-----A-------SLGKSQFLQHHGHF 246 (539)
T ss_pred CCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH-----H-------hhchhhhhhcccch
Confidence 445555555555555 566665443333 33345567788888877654210 0 011111000 01
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044131 569 LEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPE--NVGYHVLLSNIYSAERDYLQAATVRQVVKKRKL 646 (784)
Q Consensus 569 ~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 646 (784)
.+.+.+-...|-..+-..|...+++.|+.++|.+.++.+++..|. +-..+..|.+.|...+++.|+..+..+-.+...
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 111111112333444456777778888888888888888876664 445777888888888888888888777655444
Q ss_pred ccCCcccEEEECCEEEEEEeCCCCCcc-------hHHHHHHHHHHHHHHHHcCcccCCCccccccchHHHHhhh-hhHHH
Q 044131 647 AKAPGCTLIEVGGTPHVFTSGDQLHPQ-------STAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMM-KVHSE 718 (784)
Q Consensus 647 ~k~~g~s~i~~~~~~~~f~~~d~~h~~-------~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~k~~~~-~~hse 718 (784)
.|...++|...--+ .=.++|+..|. +......++.+.+.++...++|+--.-.-.+.-. -|.++ ..-||
T Consensus 327 pkSAti~YTaALLk--aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilP-PehilkrGDSE 403 (539)
T PF04184_consen 327 PKSATICYTAALLK--ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILP-PEHILKRGDSE 403 (539)
T ss_pred CchHHHHHHHHHHH--HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCC-hHHhcCCCcHH
Confidence 44433333110000 00112222221 2223446677888888888888632222221111 12233 34578
Q ss_pred HHHHHHhhc
Q 044131 719 KLAIAFGLI 727 (784)
Q Consensus 719 ~la~~~~l~ 727 (784)
-+|-||--+
T Consensus 404 AiaYAf~hL 412 (539)
T PF04184_consen 404 AIAYAFFHL 412 (539)
T ss_pred HHHHHHHHH
Confidence 777776533
|
The molecular function of this protein is uncertain. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.59 E-value=12 Score=39.90 Aligned_cols=75 Identities=19% Similarity=0.160 Sum_probs=59.1
Q ss_pred HHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 044131 567 KALEFIKGLAVEP----GPAVWGALLGA--CMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQV 640 (784)
Q Consensus 567 eA~~~~~~m~~~p----~~~~~~~ll~a--~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 640 (784)
.-+.++++.++.| +...-+.|..| ...+|++.++.....=+.+..| ++.+|-+++-......+++||...+..
T Consensus 442 kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 442 KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3455666666555 33355666654 4679999999999988999999 799999999999999999999999876
Q ss_pred HH
Q 044131 641 VK 642 (784)
Q Consensus 641 m~ 642 (784)
+.
T Consensus 521 LP 522 (549)
T PF07079_consen 521 LP 522 (549)
T ss_pred CC
Confidence 53
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.36 E-value=4.2 Score=45.03 Aligned_cols=115 Identities=16% Similarity=0.100 Sum_probs=78.2
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCcchHHHH-HHHHHhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCCHH
Q 044131 526 AGLVREGDEIFQSMIHDHGFKPLAEHYACM-VDILGRAGQLEKALEFIKGLAV------EPGPAVWGALLGACMIHKDTN 598 (784)
Q Consensus 526 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-v~~l~r~g~~~eA~~~~~~m~~------~p~~~~~~~ll~a~~~~g~~~ 598 (784)
....+.+.++++.+.+.| |+...|... ...+...|++++|.+.+++.-. +-....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 445677777777777553 665444333 3455667788888888875420 112335556667788889999
Q ss_pred HHHHHHHHHhcCCCCCcchH-HHHHHHHHhcCCh-------HHHHHHHHHHHh
Q 044131 599 LARVASEKLFELDPENVGYH-VLLSNIYSAERDY-------LQAATVRQVVKK 643 (784)
Q Consensus 599 ~a~~~~~~~~~l~p~~~~~~-~~l~~~y~~~g~~-------~~a~~~~~~m~~ 643 (784)
+|...+.++.+.+.-....| ...+-+|...|+- ++|.+.++....
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999999998776655544 4566678888888 777777776654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.20 E-value=1 Score=45.84 Aligned_cols=120 Identities=13% Similarity=0.052 Sum_probs=64.6
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCC--CC--CcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-----HH
Q 044131 519 VLYACSHAGLVREGDEIFQSMIHDHGF--KP--LAEHYACMVDILGRAGQLEKALEFIKGL-------AVEPG-----PA 582 (784)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~~~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-----~~ 582 (784)
+..|....+.++++++.|+...+-..- .| ....|..+..+|++..++++|.-+..+. .++.= ..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 334444445577777777766432111 11 1456667777777777777665544332 22111 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcC--CCCCcch----HHHHHHHHHhcCChHHHHHHH
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLFEL--DPENVGY----HVLLSNIYSAERDYLQAATVR 638 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~~l--~p~~~~~----~~~l~~~y~~~g~~~~a~~~~ 638 (784)
+..-+.-+++..|.+-.|.+..+++.++ ...|-.. ...+++||...|+.|.|..-+
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rY 269 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRY 269 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHH
Confidence 2233445677777777777776666553 2233222 345677777777766655443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.16 E-value=5.8 Score=35.59 Aligned_cols=125 Identities=10% Similarity=-0.000 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHH
Q 044131 481 WNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILG 560 (784)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~ 560 (784)
-..+|..+.+.+.......+++.+...+ ..+...++.++..++... .++..++++. .++......++..+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 3456667777777888888888887765 355566777777776543 3444455542 122333444667777
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 044131 561 RAGQLEKALEFIKGLAVEPGPAVWGALLGACMIH-KDTNLARVASEKLFELDPENVGYHVLLSNIY 625 (784)
Q Consensus 561 r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~-g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 625 (784)
+.+.++++.-++.+++. |...+.....+ ++++.|.+.+++ +.++..|..++..+
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~ 135 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL 135 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 77777777777777652 22222223334 788888888776 23445565555444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.01 E-value=12 Score=44.59 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=20.9
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHH
Q 044131 557 DILGRAGQLEKALEFIKGLAVEPGPAVW--GALLGACMIHKDTNLARVA 603 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m~~~p~~~~~--~~ll~a~~~~g~~~~a~~~ 603 (784)
.+|-.+|++.+|+.+-.++....|...- ..|.+-+...++.-+|-.+
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~i 1021 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKI 1021 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHH
Confidence 3444455555555555555433333221 3444445444444443333
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.81 E-value=1.2 Score=39.77 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=44.9
Q ss_pred HHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcc
Q 044131 558 ILGRAGQLEKALEFIKGL----AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVG 616 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m----~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 616 (784)
...+.|++++|.+.|+.+ |..| ...+--.|+.++...++++.|...+++.++++|.++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 344677888888777765 4333 2335666888999999999999999999999998765
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.85 Score=47.52 Aligned_cols=138 Identities=13% Similarity=0.029 Sum_probs=96.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 485 ISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQ 564 (784)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~ 564 (784)
.+.|.+.|++..|...|++.... |. +...-..++...... .-...+..+.-.+.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 45677888888888888886652 00 011111122222111 112355667778888899
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH-HHHHHHH
Q 044131 565 LEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQA-ATVRQVV 641 (784)
Q Consensus 565 ~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m 641 (784)
+.+|++..++. ...| |.-..--=..||...|+++.|+..++++++++|+|-.+...|+.+-.+..+..+. .+++..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888775 3444 5556666778999999999999999999999999999999898887777766655 6777877
Q ss_pred HhC
Q 044131 642 KKR 644 (784)
Q Consensus 642 ~~~ 644 (784)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=92.45 E-value=11 Score=36.47 Aligned_cols=56 Identities=21% Similarity=0.113 Sum_probs=24.5
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 044131 385 AGYTQNGLTEEAISLFQEMQASKVAP--NPVTVSSILSACAQLGAISLGKWVHELVKS 440 (784)
Q Consensus 385 ~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 440 (784)
..+.+.|++.+|.+.|+++...-... -......+..++-..++.+.|...++..++
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566666666666665431110 112223334444455555555555554443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=92.41 E-value=14 Score=42.53 Aligned_cols=162 Identities=14% Similarity=0.106 Sum_probs=68.9
Q ss_pred HHHHHhhcCCChHHHHHHhccCC---CCCcccHHHHHHHHHcCCCc-------hHHHHHHHHHHHcCCCCCChh--hHHh
Q 044131 148 ALVDLYFKFSWVKSARKVFDKMP---EKDTVLWNSMISGLMKNCCF-------QDSIWVFGDMVRNGGTWLDST--SVAA 215 (784)
Q Consensus 148 ~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~-------~~A~~l~~~m~~~~g~~pd~~--t~~~ 215 (784)
++|--+.|||++++|.++..+.. .+....+-..+..|..+.+. ++...-|++..+. ....|++ ..-.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~-~~~~DpyK~AvY~ 194 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN-STDGDPYKRAVYK 194 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT--TTS-HHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC-CCCCChHHHHHHH
Confidence 46666779999999999883332 23345566677777665322 3445556665543 3322554 3333
Q ss_pred HHHHHhccc-c-------hhHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHH
Q 044131 216 VLPAVAEVQ-E-------LRLGMEIQCLGLKLGFH-----DHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAM 282 (784)
Q Consensus 216 ll~a~~~~~-~-------~~~a~~~~~~~~~~g~~-----~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~l 282 (784)
+|..|--.. . ++.-.-++-.+++..-. .+..++..|-+...+-|. +.|.. ..+...|
T Consensus 195 ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge-----~~F~~--~~~p~~Y--- 264 (613)
T PF04097_consen 195 ILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGE-----SHFNA--GSNPLLY--- 264 (613)
T ss_dssp HHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-G-----GGCTT--------H---
T ss_pred HHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhch-----hhccc--chhHHHH---
Confidence 444442211 1 12222222222222211 112233322222221111 22222 1222222
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhc
Q 044131 283 ISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFY 322 (784)
Q Consensus 283 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 322 (784)
...+.-.|+++.|++.+-+ ..+...|.+.+...+..+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~g 302 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYG 302 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcC
Confidence 3455678899999988876 3344556666666655443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.26 E-value=3.3 Score=37.71 Aligned_cols=92 Identities=18% Similarity=0.222 Sum_probs=66.0
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCC
Q 044131 519 VLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VEPGPAVWGALLGACMIHKD 596 (784)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~ll~a~~~~g~ 596 (784)
+++.-...++.+++..+++.+. -+.|. .++-..-+..+.+.|++.+|..+++++. -.|....-.+|+..|.....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 3344456678888888888875 56676 3444445566788999999999999884 34556667788888887766
Q ss_pred HHHHHHHHHHHhcCCCC
Q 044131 597 TNLARVASEKLFELDPE 613 (784)
Q Consensus 597 ~~~a~~~~~~~~~l~p~ 613 (784)
-..=...++.+++..|+
T Consensus 93 D~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 93 DPSWRRYADEVLESGAD 109 (160)
T ss_pred ChHHHHHHHHHHhcCCC
Confidence 66667777888887764
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.13 E-value=3.6 Score=41.21 Aligned_cols=117 Identities=14% Similarity=0.113 Sum_probs=70.3
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHH
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGA---LLGACMIHKDTN 598 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~---ll~a~~~~g~~~ 598 (784)
....|+..++...|...... .|+ .+.-..|...|...|+.++|..++..+|.+-...-|.. -+.......+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34455666666666655432 222 44555667777777777777777777764443333333 111222222222
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 599 LARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 599 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
... .+++-+..+|+|...-..|+..|...|+.++|.+..-.+..
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 211 23444567899999999999999999999999887655543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.95 Score=44.78 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---cchHHHH
Q 044131 552 YACMVDILGRAGQLEKALEFIKGL----A---VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPEN---VGYHVLL 621 (784)
Q Consensus 552 ~~~lv~~l~r~g~~~eA~~~~~~m----~---~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l 621 (784)
|+.-+++| ..|++.+|..-|... | ..||..-| |..++...|+++.|...|..+.+-.|++ |..+.-|
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 44433332 344455555544432 2 34444444 6666666677776666666666644433 3456666
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 044131 622 SNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 622 ~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+.+..+.|+-++|..+++...+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 6677777777777776666544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.95 Score=42.26 Aligned_cols=88 Identities=15% Similarity=0.086 Sum_probs=66.6
Q ss_pred HHHhcCCHHHHHHHHHhC-C-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 558 ILGRAGQLEKALEFIKGL-A-VEP-----GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERD 630 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m-~-~~p-----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 630 (784)
-+...|++++|..-+... . .+| ..+.|..-..+..+.+..+.|+....++++++|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 344566677666665443 1 112 233455555677788999999999999999999988888888999999999
Q ss_pred hHHHHHHHHHHHhCC
Q 044131 631 YLQAATVRQVVKKRK 645 (784)
Q Consensus 631 ~~~a~~~~~~m~~~~ 645 (784)
+++|..-++.+.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999987743
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.80 E-value=29 Score=39.97 Aligned_cols=114 Identities=14% Similarity=-0.066 Sum_probs=56.0
Q ss_pred HHHhhCCCChhHHHHHhccCCCCCcchHHHHHHH----HhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCC
Q 044131 48 AHRLSDFKATCYARALFFSIPKPDLFLFNVIIRG----FSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCD 123 (784)
Q Consensus 48 ~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~----~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 123 (784)
+++..+-.-.+.|..+-..-..+. ..-..+.+. +.+.|++++|.. .+-+-.. -+.| +.+++-+.....
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~~d~-d~~~~i~~kYgd~Ly~Kgdf~~A~~-qYI~tI~-~le~-----s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQHLDE-DTLAEIHRKYGDYLYGKGDFDEATD-QYIETIG-FLEP-----SEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHcc-cCCh-----HHHHHHhcCHHH
Confidence 444444445555555544322221 122223332 245677777776 4433321 1222 234444444444
Q ss_pred chHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCC
Q 044131 124 RSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMP 170 (784)
Q Consensus 124 ~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~ 170 (784)
+..-...++.+.+.|+... .--+.|++.|.|.++.+.-.+..+..+
T Consensus 413 IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 4444455666666665332 233567777777777766666655544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.78 E-value=3.1 Score=45.42 Aligned_cols=102 Identities=15% Similarity=0.176 Sum_probs=64.7
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHH
Q 044131 354 TVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKW 433 (784)
Q Consensus 354 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 433 (784)
+...++|+++.|.++-++.. +...|..|.....+.|+.+-|.+.|.+... +..++-.+...|+.+.-.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 34467888888888876655 556888888888888888888888876542 4445555666677766666
Q ss_pred HHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhh
Q 044131 434 VHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDL 472 (784)
Q Consensus 434 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 472 (784)
+-......| . +|.....+.-.|++++..+++.+
T Consensus 395 l~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 395 LAKIAEERG-D-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666555 1 33334444455666666655544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.77 E-value=1.3 Score=43.82 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSG----VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYAC 554 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 554 (784)
.|+.-+.. .+.|++.+|...|...++.. |+. ..+-.|..++...|++++|..+|..+.++++-.|. ++.+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 45555443 45677888888888888753 221 23556778888888888888888888887766666 467777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 044131 555 MVDILGRAGQLEKALEFIKGL 575 (784)
Q Consensus 555 lv~~l~r~g~~~eA~~~~~~m 575 (784)
+...+.+.|+.++|...+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 777777777777777666654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.09 E-value=34 Score=39.44 Aligned_cols=142 Identities=13% Similarity=0.047 Sum_probs=80.4
Q ss_pred HHHHHhhcCCChHHHHHHhccCCCCCcccHHHHH----HHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcc
Q 044131 148 ALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMI----SGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEV 223 (784)
Q Consensus 148 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~ 223 (784)
.-+++..+...++-|..+-..-..+ ...-..+. +-+.+.|++++|..-|-+-.. -+.|. .+++-+...
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCChH-----HHHHHhcCH
Confidence 3455556666666666665443322 11222222 234568889999888877653 23332 344455555
Q ss_pred cchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCee-eHHHHHHHHHhCCCchHHHHH
Q 044131 224 QELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLI-SCNAMISGYTCNGKTESSLRL 298 (784)
Q Consensus 224 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~-~~~~li~~~~~~g~~~~A~~l 298 (784)
..+..-..+++.+.+.|+... .--+.|++.|.|.++.+.-.+..+....-..+ -....+..+.+.+..++|..+
T Consensus 411 q~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 556666667777777787543 33467889999999988877776665521111 133344444444444444433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.00 E-value=4.3 Score=36.25 Aligned_cols=114 Identities=18% Similarity=0.077 Sum_probs=65.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHh
Q 044131 485 ISGYGLHGHGLEALQLFSEMLHSGIRP---SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGR 561 (784)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r 561 (784)
.....+.|++++|.+.|+.+... .+. ....-..++.++...|++++|...+++.++-+.-.|+ ..|.....+|+.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHH
Confidence 34445668888888888877764 222 2344666777788888888888888877755433333 345444444443
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 562 AGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 562 ~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
-...+ ..+..+. +.=+-.+....|...++.+++.-|++.
T Consensus 95 ~~~~~---~~~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 95 YEQDE---GSLQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHhh---hHHhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 32222 1111111 111122335677788888888888754
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=90.85 E-value=20 Score=37.95 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC---Chh----HHHHHHHHHHh---CCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044131 351 ALSTVYSRLNEMEAARKLFDESSEK---SLA----SWNAMIAGYTQ---NGLTEEAISLFQEMQASKVAPNPVTVSSILS 420 (784)
Q Consensus 351 ~Li~~y~~~g~~~~A~~~f~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 420 (784)
.|+-.|....+++...++.+.++.. ++. .--...-++.+ .|+.++|++++..+....-.+++.||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4455688888888888888887654 221 11123344556 7899999999999776667788888877766
Q ss_pred HHh
Q 044131 421 ACA 423 (784)
Q Consensus 421 a~~ 423 (784)
.|-
T Consensus 226 IyK 228 (374)
T PF13281_consen 226 IYK 228 (374)
T ss_pred HHH
Confidence 553
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.65 E-value=2 Score=42.32 Aligned_cols=99 Identities=12% Similarity=0.131 Sum_probs=75.0
Q ss_pred HHHHHhhcC--CCChhHHHHHHHHHHhC-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhC-----------
Q 044131 365 ARKLFDESS--EKSLASWNAMIAGYTQN-----GLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLG----------- 426 (784)
Q Consensus 365 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~----------- 426 (784)
.++.|...+ ++|-.+|-+++..|... +..+=....++.|.+-|+.-|..+|..||+.+-+-.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 456677666 67888888888888754 556666677888999999999999999998875432
Q ss_pred -----chHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCH
Q 044131 427 -----AISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNI 463 (784)
Q Consensus 427 -----~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 463 (784)
+-+-+..++++|...|+-||-.+-..|++.+++.|-.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2344677888888888888888888888888777653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=90.21 E-value=4.9 Score=44.58 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=36.8
Q ss_pred CCHHHHHHHHhhcCC--CCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCCHHHHHH
Q 044131 461 GNIVEARELFDLMSH--KSEVTWNTMIS-GYGLHGHGLEALQLFSEMLHSGI---RPSGVTFLSVLYACSHAGLVREGDE 534 (784)
Q Consensus 461 g~~~~A~~~f~~~~~--~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~---~pd~~t~~~ll~a~~~~g~~~~a~~ 534 (784)
...+.|.++++.+.+ |+...|.-.-. .+...|+.++|++.|++...... +.....+--+.-.+...+++++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 445555566555553 55555544332 23345666666666665442110 0111222233333444555555555
Q ss_pred HHHHhHH
Q 044131 535 IFQSMIH 541 (784)
Q Consensus 535 ~~~~m~~ 541 (784)
+|..+.+
T Consensus 327 ~f~~L~~ 333 (468)
T PF10300_consen 327 YFLRLLK 333 (468)
T ss_pred HHHHHHh
Confidence 5555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.20 E-value=19 Score=35.10 Aligned_cols=199 Identities=14% Similarity=0.041 Sum_probs=104.0
Q ss_pred HHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCC--HHHHHHHHHHHHHcC
Q 044131 415 VSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKS--EVTWNTMISGYGLHG 492 (784)
Q Consensus 415 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~--~~~~~~li~~~~~~g 492 (784)
|...-.++....++++++.-+..+.+. .+.+...|. ....++.|.-+.+++.+-+ +..++--...|.++|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 333344566666777777655555432 122221111 1223445555555555322 235666677788888
Q ss_pred CHHHHHHHHHHHHH--CCCCCCHHH--HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 044131 493 HGLEALQLFSEMLH--SGIRPSGVT--FLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKA 568 (784)
Q Consensus 493 ~~~~A~~~~~~m~~--~g~~pd~~t--~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA 568 (784)
..+-|-..+++.-+ +++.||... |..-+......++...| .+.|......|.|..+++||
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma----------------~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA----------------FELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH----------------HHHHHHhhhHhhhhHHhhHH
Confidence 77766666655432 234554321 22222222222222222 33455556677788888887
Q ss_pred HHHHHhCC-------CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc----CCCCCcchHHHHHHHHHhcCChHHHHH
Q 044131 569 LEFIKGLA-------VEPGPA-VWGALLGACMIHKDTNLARVASEKLFE----LDPENVGYHVLLSNIYSAERDYLQAAT 636 (784)
Q Consensus 569 ~~~~~~m~-------~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~----l~p~~~~~~~~l~~~y~~~g~~~~a~~ 636 (784)
-..+.+-. --|+.. .+-+++-.+....|+..|++.++.-.+ ..|++......|...| ..|+.+++.+
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 76665432 122221 344444455556688888888887555 3466666666665554 4577777776
Q ss_pred HH
Q 044131 637 VR 638 (784)
Q Consensus 637 ~~ 638 (784)
|.
T Consensus 249 vl 250 (308)
T KOG1585|consen 249 VL 250 (308)
T ss_pred HH
Confidence 64
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.13 E-value=39 Score=38.97 Aligned_cols=210 Identities=12% Similarity=0.105 Sum_probs=90.1
Q ss_pred HHHHHHHhcCChHHHHHHHhcC---CCCCeeeHHHHHHHHHhCCC-------chHHHHHHHHHHHcCCCCChh--hHHhH
Q 044131 250 GLVSFYSKCGEVERAELLFRDI---VRPDLISCNAMISGYTCNGK-------TESSLRLFRQLLASAERVNSS--TIVGL 317 (784)
Q Consensus 250 ~li~~y~~~g~~~~A~~~f~~~---~~~d~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~--t~~~l 317 (784)
++|-.+.+||++++|.++..+. .++....+-..+..|+.+.+ -++...-|++........|++ ..-.+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~i 195 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYKI 195 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 5667788999999999888333 22344556667777766532 235555666665544433443 22233
Q ss_pred HHhhcCCC-C-------hhHHHHHHHHHHHhCCCc-----chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHH
Q 044131 318 IPVFYPFG-H-------LHLTNCIHSFCLKSGIVS-----NSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMI 384 (784)
Q Consensus 318 l~~~~~~~-~-------~~~a~~i~~~~~~~g~~~-----~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 384 (784)
|..|--.. + .+.-..++-.+++..-.. +..++..|-+...+-| .+.|.. ..+...| .
T Consensus 196 lg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G-----e~~F~~--~~~p~~Y---f 265 (613)
T PF04097_consen 196 LGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYG-----ESHFNA--GSNPLLY---F 265 (613)
T ss_dssp HHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT--------H---H
T ss_pred HhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhc-----hhhccc--chhHHHH---H
Confidence 44443211 1 222233333333332211 1222222222211111 122222 1122222 2
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcC-CCCchhhHhHHHHHHHh---c
Q 044131 385 AGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRN-FESNIYVSTALIDMYAK---C 460 (784)
Q Consensus 385 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~Li~~y~k---~ 460 (784)
..+.-.|+++.|++.+.+ ..+...|.+.+...+..+.-+.-.+... ..+.... -.+...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 344568999999998876 3345667777777776655443332222 2222111 01112446678888876 4
Q ss_pred CCHHHHHHHHhhcC
Q 044131 461 GNIVEARELFDLMS 474 (784)
Q Consensus 461 g~~~~A~~~f~~~~ 474 (784)
.+..+|.+.|--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 67888888877665
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.56 E-value=25 Score=35.47 Aligned_cols=155 Identities=15% Similarity=0.069 Sum_probs=98.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 485 ISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQ 564 (784)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~ 564 (784)
.......|++.+|..+|....+.. +-+...-..+..++...|+++.|..++..+-.+.. .........-+..+.++..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhc
Confidence 345567788888999888888753 22344556677888889999999998887643210 0011112334667777777
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChHH-HHHHHHH
Q 044131 565 LEKALEFIKGLAVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELD--PENVGYHVLLSNIYSAERDYLQ-AATVRQV 640 (784)
Q Consensus 565 ~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~--p~~~~~~~~l~~~y~~~g~~~~-a~~~~~~ 640 (784)
..+..++..+..-.| |...--.|...+...|+.+.|...+-.+++.+ -+|...--.|..++...|.-+. +.+.|++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 777777766665566 45566667777788888888877666666543 4555666667777766664433 3333444
Q ss_pred H
Q 044131 641 V 641 (784)
Q Consensus 641 m 641 (784)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 3
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.51 E-value=27 Score=35.73 Aligned_cols=76 Identities=7% Similarity=0.046 Sum_probs=40.8
Q ss_pred CcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044131 343 VSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSAC 422 (784)
Q Consensus 343 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 422 (784)
.++..+...-+.+..+.|+.+....+.+.+..+++ .-..+.++.+.|.. +|+..+.++... .||...-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 34555555555666666664433333344433332 23456666777764 577777777653 34655555555554
Q ss_pred h
Q 044131 423 A 423 (784)
Q Consensus 423 ~ 423 (784)
.
T Consensus 278 ~ 278 (280)
T PRK09687 278 K 278 (280)
T ss_pred h
Confidence 3
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.40 E-value=33 Score=36.60 Aligned_cols=140 Identities=13% Similarity=0.123 Sum_probs=83.5
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCc---ccHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 044131 129 LLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDT---VLWNSMISGLMKNCCFQDSIWVFGDMVRNGG 205 (784)
Q Consensus 129 ~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g 205 (784)
++-+.+... +.|...|-+||.-|...|..++-++++++|..|-+ ..|..-|++=....++.....+|.+.... .
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k-~ 106 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK-S 106 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh-h
Confidence 444444332 56778888999999999999999999999987743 46888888877788888888888888765 4
Q ss_pred CCCChhhHHhHHHHHhcccchh------HHHHHHHHHHH-hCCCC-chhHHHHHHHHHH---------hcCChHHHHHHH
Q 044131 206 TWLDSTSVAAVLPAVAEVQELR------LGMEIQCLGLK-LGFHD-HVYVLTGLVSFYS---------KCGEVERAELLF 268 (784)
Q Consensus 206 ~~pd~~t~~~ll~a~~~~~~~~------~a~~~~~~~~~-~g~~~-~~~~~~~li~~y~---------~~g~~~~A~~~f 268 (784)
+..| .|..-|.-..+.+.+- ...+.++.++. .+++| ....|+..++..- ...++|..++.+
T Consensus 107 l~ld--LW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 LNLD--LWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred ccHh--HHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 4433 3333333332222211 12234444443 34544 3334555544332 223455566666
Q ss_pred hcCCC
Q 044131 269 RDIVR 273 (784)
Q Consensus 269 ~~~~~ 273 (784)
.++..
T Consensus 185 ~ral~ 189 (660)
T COG5107 185 MRALQ 189 (660)
T ss_pred HHHHc
Confidence 66643
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.23 E-value=1.9 Score=37.27 Aligned_cols=87 Identities=18% Similarity=0.150 Sum_probs=45.1
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CC-CHH---HHHHHHHHHHhcC
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-V-EP-GPA---VWGALLGACMIHK 595 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~p-~~~---~~~~ll~a~~~~g 595 (784)
.+..|+++.|++.|.+.+ .+-|. ...||.-..++--.|+.++|++=+++.. + .| ... .|..-...|+..|
T Consensus 53 laE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 445555555555555544 23332 4555555555555566655555554431 0 11 111 2222334566777
Q ss_pred CHHHHHHHHHHHhcCCC
Q 044131 596 DTNLARVASEKLFELDP 612 (784)
Q Consensus 596 ~~~~a~~~~~~~~~l~p 612 (784)
+.+.|..-|+.+-++..
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 77777777766665544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.97 E-value=3.8 Score=41.51 Aligned_cols=159 Identities=11% Similarity=-0.043 Sum_probs=112.1
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHH----HHHHHHhcCCH
Q 044131 490 LHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYAC----MVDILGRAGQL 565 (784)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----lv~~l~r~g~~ 565 (784)
-+|...+|-..++++++. .+.|...+.-.=.+|...|+.+.-...++++... -.|+...|.. +.-.+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888888899998875 6778888888889999999999999999888742 3556544443 34455688999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHH
Q 044131 566 EKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPEN----VGYHVLLSNIYSAERDYLQAATVRQ 639 (784)
Q Consensus 566 ~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~----~~~~~~l~~~y~~~g~~~~a~~~~~ 639 (784)
++|++.-++. .+.| |.-.-.++.......|+..+|.+..++--..-.+. +-.|-..+-.|...+.++.|.++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998876 4555 44466677777888899999988876643321111 1234445556777789999999987
Q ss_pred HHHhCCCccCCc
Q 044131 640 VVKKRKLAKAPG 651 (784)
Q Consensus 640 ~m~~~~~~k~~g 651 (784)
.=.-+.+.|..+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 654444545444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=88.71 E-value=13 Score=34.01 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=36.2
Q ss_pred hcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 044131 459 KCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEI 535 (784)
Q Consensus 459 k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 535 (784)
..|++++|..+|.-+. .-|..-|..|..++-..+++++|+..|......+ .-|+..+-.....+...|+.+.|+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHH
Confidence 3455555555555433 1233344455555555555555555554444322 12222233333444444444444444
Q ss_pred HHHhH
Q 044131 536 FQSMI 540 (784)
Q Consensus 536 ~~~m~ 540 (784)
|+...
T Consensus 128 f~~a~ 132 (165)
T PRK15331 128 FELVN 132 (165)
T ss_pred HHHHH
Confidence 44443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.48 E-value=27 Score=34.50 Aligned_cols=179 Identities=16% Similarity=0.067 Sum_probs=107.4
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH--HHHH
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMSHK------SEVTWNTMISGYGLHGHGLEALQLFSEMLHSG-IRPSG--VTFL 517 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~--~t~~ 517 (784)
...|+--+ .-.+.|++++|.+.|+.+... ...+--.++-++-+.+++++|+..+++....- -.||. +.|.
T Consensus 35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 34444433 345679999999999999742 23344556677888999999999999988743 23332 3444
Q ss_pred HHHHHHHccCC----HH---HHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHH--HHHHH
Q 044131 518 SVLYACSHAGL----VR---EGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAV--WGALL 588 (784)
Q Consensus 518 ~ll~a~~~~g~----~~---~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~--~~~ll 588 (784)
..++-+....+ .. +|..-|+..+.+| |+. .--.+|..-+.... |... =.+..
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~---d~LA~~Em~Ia 174 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLN---DALAGHEMAIA 174 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHH---HHHHHHHHHHH
Confidence 44442222221 12 2333333333322 221 11122221111110 0000 12345
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044131 589 GACMIHKDTNLARVASEKLFELDPENVG---YHVLLSNIYSAERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 645 (784)
.-|.++|.+.-|..-++.+++--|+.+. .+..|.++|.+.|..++|.+..+-+....
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 5688899999999999999987666554 45677888999999999999988887644
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=88.37 E-value=32 Score=35.16 Aligned_cols=66 Identities=15% Similarity=0.069 Sum_probs=31.9
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcCC-C--CHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHCCCCCCH
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMSH-K--SEVTWNTMISGY---GLHGHGLEALQLFSEMLHSGIRPSG 513 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-~--~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~pd~ 513 (784)
+.++-.-+....+.++.+.+.+++.+|.. . ....+...+..+ ..+ ....|...+..+....+.|..
T Consensus 121 ~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 121 PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 33333344445556666666666666542 1 223444444433 232 234566666666555455444
|
It is also involved in sporulation []. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.35 E-value=0.62 Score=29.82 Aligned_cols=31 Identities=26% Similarity=0.132 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
+|..+...+...|+.+.|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777788888888888888888888774
|
... |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=87.97 E-value=1.6 Score=31.60 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHH
Q 044131 586 ALLGACMIHKDTNLARVASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 586 ~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 621 (784)
.|.-++.+.|+++.|.+..+.+++++|+|..+-.+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 455688999999999999999999999987655444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.66 E-value=3.5 Score=41.55 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=58.7
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLH-----SGIRPSGVTFLS 518 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~t~~~ 518 (784)
..++..++..+..+|+.+.+.+.++++.. -|...|..+|.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 44677888899999999999999888763 4778999999999999999999999998875 466666555443
Q ss_pred H
Q 044131 519 V 519 (784)
Q Consensus 519 l 519 (784)
.
T Consensus 233 y 233 (280)
T COG3629 233 Y 233 (280)
T ss_pred H
Confidence 3
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.65 E-value=16 Score=37.31 Aligned_cols=175 Identities=9% Similarity=0.082 Sum_probs=113.7
Q ss_pred HhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHH--HHHHHHccCCHH
Q 044131 458 AKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVT--FLS--VLYACSHAGLVR 530 (784)
Q Consensus 458 ~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t--~~~--ll~a~~~~g~~~ 530 (784)
.-.|+..+|...++++.+ .|..+|+--=.+|..+|+...-...+++.... ..||... |.. +..++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 346788888888887763 58889999999999999999999999998865 3555533 322 223456789999
Q ss_pred HHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCC--CC-----CHHHHHHHHHHHHhcCCHHHHHH
Q 044131 531 EGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLAV--EP-----GPAVWGALLGACMIHKDTNLARV 602 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~~--~p-----~~~~~~~ll~a~~~~g~~~~a~~ 602 (784)
+|.+.-++.. .+.|. .-.-.+....+--.|+..|+.+++.+-.- +. ...-|..-+ .+...+.++.|+.
T Consensus 193 dAEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aeye~ale 268 (491)
T KOG2610|consen 193 DAEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEYEKALE 268 (491)
T ss_pred hHHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccchhHHHH
Confidence 9999888765 44443 33344567778889999999999987531 10 111222211 1233478999999
Q ss_pred HHHHHh--cCCCCCcch---HHHHHHHHHhcCChHHHHHH
Q 044131 603 ASEKLF--ELDPENVGY---HVLLSNIYSAERDYLQAATV 637 (784)
Q Consensus 603 ~~~~~~--~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~ 637 (784)
+|++-+ +++.+|... |.-+-.+......|..-.++
T Consensus 269 IyD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~l 308 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKL 308 (491)
T ss_pred HHHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhh
Confidence 987543 466666532 33334444444444444433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.54 E-value=2.2 Score=38.84 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=30.4
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 593 IHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 593 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
.+++.+.++.++..+.-+.|+.+..-..-++++...|+|.+|.++++.+.++
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4455555555555555566666665556666666666666666665555443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.42 E-value=37 Score=34.75 Aligned_cols=236 Identities=10% Similarity=0.045 Sum_probs=108.3
Q ss_pred CcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCh----hHHHHHHHHHHhCCCCCCHHHHHHH
Q 044131 343 VSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLT----EEAISLFQEMQASKVAPNPVTVSSI 418 (784)
Q Consensus 343 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~pd~~t~~~l 418 (784)
.+|..+....+..+...|..+....+..-....|...=..-+.++.+.|+. ++++..+..+... .|+...-.+.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 344445555555555555443333333333444554444555566666653 3566666665332 4555555555
Q ss_pred HHHHhhhCchHH--HHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC-CHH
Q 044131 419 LSACAQLGAISL--GKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHG-HGL 495 (784)
Q Consensus 419 l~a~~~~~~~~~--a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g-~~~ 495 (784)
+.++...+.... .......+...-..++..+-...+.++++.|+.+....+..-+..+|...-...+.++++.+ +..
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence 555544432110 11122222222223345555555666666665433333333334444444444444444432 133
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 044131 496 EALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL 575 (784)
Q Consensus 496 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m 575 (784)
++...+..+.. .+|...-...+.++.+.|. .++...+-...++ ++ .....+.+++.-|.- +|...+.++
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 45555555553 3455555555566666555 3344444443322 11 223455555555553 455555444
Q ss_pred C-CCCCHHHHHHHHHHH
Q 044131 576 A-VEPGPAVWGALLGAC 591 (784)
Q Consensus 576 ~-~~p~~~~~~~ll~a~ 591 (784)
- -.||..+-...+.+|
T Consensus 261 ~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 261 LYKFDDNEIITKAIDKL 277 (280)
T ss_pred HhhCCChhHHHHHHHHH
Confidence 2 244444444444433
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.40 E-value=25 Score=35.28 Aligned_cols=56 Identities=16% Similarity=0.039 Sum_probs=50.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
..+|...|.+.+|.++.++++.++|-+...+-.|.++|+..|+--+|.+-++.+.+
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 35788999999999999999999999999999999999999998888888877754
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.29 E-value=3.8 Score=41.27 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHh-----CCCCCCHHHHHH
Q 044131 346 SSVLTALSTVYSRLNEMEAARKLFDESSEK---SLASWNAMIAGYTQNGLTEEAISLFQEMQA-----SKVAPNPVTVSS 417 (784)
Q Consensus 346 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~~~ 417 (784)
..++..++..+..+|+.+.+.+.+++.... +...|..+|.+|.++|+...|+..|+++.. .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456788999999999999999999987654 667999999999999999999999999876 578887766655
Q ss_pred HHHH
Q 044131 418 ILSA 421 (784)
Q Consensus 418 ll~a 421 (784)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.07 E-value=0.81 Score=29.97 Aligned_cols=25 Identities=16% Similarity=-0.068 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 584 WGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 584 ~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
|..|...|...|++++|+.++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=86.25 E-value=87 Score=37.91 Aligned_cols=116 Identities=18% Similarity=0.110 Sum_probs=61.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 044131 453 LIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREG 532 (784)
Q Consensus 453 Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a 532 (784)
.++.--+.|.+.+|+.++..=.++--..|.+...-+.+.+.+++|.-.|+..-+ ..-.+.|+-.+|+++++
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHH
Confidence 334444555555555554332222222333333333445666676666664322 12346677778888888
Q ss_pred HHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 044131 533 DEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEP 579 (784)
Q Consensus 533 ~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p 579 (784)
+.+-.++.. +-.--..+--.|+..+...|+.-||-++.....-.|
T Consensus 985 l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 985 LSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 877776631 111112233567777777788777777776654333
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.04 E-value=2.2 Score=43.20 Aligned_cols=93 Identities=13% Similarity=0.070 Sum_probs=64.9
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCC
Q 044131 520 LYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGLA-VEPG-PAVWGALLGACMIHKD 596 (784)
Q Consensus 520 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~a~~~~g~ 596 (784)
.+-|.+.|.+++|...|..-. .+.| +...|..-.-+|.+..++.-|+.=.+..- +... .-.|.--+.|-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 556778889999998888665 5566 67777777778888888877765554431 1111 2245555555566788
Q ss_pred HHHHHHHHHHHhcCCCCCc
Q 044131 597 TNLARVASEKLFELDPENV 615 (784)
Q Consensus 597 ~~~a~~~~~~~~~l~p~~~ 615 (784)
.++|+.-++.+++++|++.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhHHHHHhhCcccH
Confidence 8889999999999999853
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=85.95 E-value=13 Score=38.22 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHH-HHHHHHccCC--HHHHHHHHHHhHHhcCCCCCcchHHHHH
Q 044131 495 LEALQLFSEMLHSGIRPSGV-TFLS-VLYACSHAGL--VREGDEIFQSMIHDHGFKPLAEHYACMV 556 (784)
Q Consensus 495 ~~A~~~~~~m~~~g~~pd~~-t~~~-ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~lv 556 (784)
+++..+|+.+...|+..+.. -+.+ +|..+..... +.++.++++.+.+. |+++...+|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 56777888888878766433 3433 3333332222 45778888888654 8888888876554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=85.83 E-value=24 Score=31.00 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=47.8
Q ss_pred hcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 044131 459 KCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQS 538 (784)
Q Consensus 459 k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 538 (784)
+||++......+-.+. .+..-....+......|+-+.-.+++.++... -+|++.....+.+||.+.|+..++.+++..
T Consensus 68 ~C~NlKrVi~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp G-S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhcchHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4455444444443332 22233444566677788888888888877653 367788888888888888888888888887
Q ss_pred hHHh
Q 044131 539 MIHD 542 (784)
Q Consensus 539 m~~~ 542 (784)
..+.
T Consensus 146 ACek 149 (161)
T PF09205_consen 146 ACEK 149 (161)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.83 E-value=51 Score=34.83 Aligned_cols=150 Identities=12% Similarity=-0.044 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHhHHh-cCCCCCcch
Q 044131 476 KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP---SGVTFLSVLYACSHAGLVREGDEIFQSMIHD-HGFKPLAEH 551 (784)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~ 551 (784)
....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+.++|...++...+. ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 344577777788888888888888887777643211 2223333344455667777777777766642 110101111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 044131 552 YACMVDILGRAGQLEKALEF-IKGLAVEPGPAVWGALLGACMI------HKDTNLARVASEKLFELDPENVGYHVLLSNI 624 (784)
Q Consensus 552 ~~~lv~~l~r~g~~~eA~~~-~~~m~~~p~~~~~~~ll~a~~~------~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 624 (784)
...+...+.. ..+..... ........-..++..+..-+.. +++.+.+...++.+.++.|+....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 0000000001123333333333 3788889999999999999888777777766
Q ss_pred HHh
Q 044131 625 YSA 627 (784)
Q Consensus 625 y~~ 627 (784)
+..
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.37 E-value=13 Score=41.86 Aligned_cols=181 Identities=22% Similarity=0.332 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH----------HHHHHHHHHhhhCchHHHHHHHHHHHHc-C-CCCc
Q 044131 379 SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPV----------TVSSILSACAQLGAISLGKWVHELVKSR-N-FESN 446 (784)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----------t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g-~~~~ 446 (784)
+-..|+-.|-...+++..+++.+.+++ -||.. .|.-.|+-=-+-|+-++|..+.--+++. | +.|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap- 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP- 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC-
Confidence 344555667777777777777777765 24332 2222233223456667776665555443 2 233
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHH
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVT---FLSVLYAC 523 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t---~~~ll~a~ 523 (784)
+||+-||++- +.|- +-+.|...+..+.|++.|++.-+ +.|+..+ +..||.|
T Consensus 279 --------Dm~Cl~GRIY------KDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a- 332 (1226)
T KOG4279|consen 279 --------DMYCLCGRIY------KDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA- 332 (1226)
T ss_pred --------ceeeeechhh------hhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH-
Confidence 4677777643 2221 12334455566778888888776 6777644 4444443
Q ss_pred HccCC-HHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044131 524 SHAGL-VREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARV 602 (784)
Q Consensus 524 ~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~ 602 (784)
+|. ++...++ +.+ | -.|-.+++|.|.++.-.++++- ...+.+-....|+..|.+
T Consensus 333 --aG~~Fens~El-q~I----g--------mkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 333 --AGEHFENSLEL-QQI----G--------MKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQ 387 (1226)
T ss_pred --hhhhccchHHH-HHH----H--------HHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHH
Confidence 222 1111111 111 1 1244578899999888777652 345666777899999999
Q ss_pred HHHHHhcCCCCC
Q 044131 603 ASEKLFELDPEN 614 (784)
Q Consensus 603 ~~~~~~~l~p~~ 614 (784)
+++.++++.|..
T Consensus 388 Aae~mfKLk~P~ 399 (1226)
T KOG4279|consen 388 AAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHhccCCce
Confidence 999999999863
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.24 E-value=4.5 Score=36.19 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=42.4
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044131 593 IHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 593 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 645 (784)
..++.+.++.+...+.-+.|+.+..-..-+.++...|+|+||.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 37778888888888888888888888888888888888888888887776654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=84.98 E-value=2.1 Score=28.00 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEML 505 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (784)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666666777777777777776643
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=84.87 E-value=83 Score=36.47 Aligned_cols=265 Identities=10% Similarity=0.055 Sum_probs=135.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhh
Q 044131 346 SSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQL 425 (784)
Q Consensus 346 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 425 (784)
...-..-+..+.+.+++....+ |..-+..+...-.....+....|+.++|....+.+-..| ...+.....++..+.+.
T Consensus 99 ~~Lr~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 99 RSLQSRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHc
Confidence 3344444555566777777777 432233455555666677777888777777777765555 22344556666666654
Q ss_pred CchHHHH--HHHHHHHHcC-----------CCCc-hhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHH--
Q 044131 426 GAISLGK--WVHELVKSRN-----------FESN-IYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYG-- 489 (784)
Q Consensus 426 ~~~~~a~--~i~~~~~~~g-----------~~~~-~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~-- 489 (784)
|.+.... +=+..+...| ++++ ......++..+.+ ...+...+.... ++...-...+-++.
T Consensus 177 g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~l~Rl 252 (644)
T PRK11619 177 GKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAAVAFASV 252 (644)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHHHHHHHH
Confidence 4433221 1111111111 1111 1122233333322 222222222221 22211111222222
Q ss_pred HcCCHHHHHHHHHHHHHC-CCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHH
Q 044131 490 LHGHGLEALQLFSEMLHS-GIRPSGV--TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLE 566 (784)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~-g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~ 566 (784)
...+.+.|..++.+.... +..+... ....+.......+..+++...++..... ..+.....--+..-.+.++++
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHH
Confidence 235568888888877543 3333332 2233333333332366777777765321 124444444555555899999
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 044131 567 KALEFIKGLAV--EPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSN 623 (784)
Q Consensus 567 eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 623 (784)
.+...|..|+- .-...-.--+..+....|+.+.|...++++.. + .++|-.|+.
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LAa 384 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVAA 384 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHHH
Confidence 99999999862 21222223355566668999999999999744 2 347777653
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.82 E-value=15 Score=32.95 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=54.9
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 044131 525 HAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLAVE-PGPAVWGALLGACMIHKDTNLARV 602 (784)
Q Consensus 525 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~-p~~~~~~~ll~a~~~~g~~~~a~~ 602 (784)
..++.+++..+++.|. -+.|+ .+.-.+-+-.+.+.|+++||..++++..-. |....-.+|+.-|.....-..=..
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~ 98 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHV 98 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHH
Confidence 3777888888888775 55666 333344455677889999999999888533 344455667766665444344445
Q ss_pred HHHHHhcCCCC
Q 044131 603 ASEKLFELDPE 613 (784)
Q Consensus 603 ~~~~~~~l~p~ 613 (784)
.+..+++-+++
T Consensus 99 ~A~~~le~~~~ 109 (153)
T TIGR02561 99 HADEVLARDAD 109 (153)
T ss_pred HHHHHHHhCCC
Confidence 55555555443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.71 E-value=2.2 Score=27.18 Aligned_cols=28 Identities=21% Similarity=0.263 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3567777777777777777777777776
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.01 E-value=3.2 Score=28.50 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHS 507 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (784)
+|..+...|.+.|++++|+++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666677777777777777777663
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.58 E-value=43 Score=32.16 Aligned_cols=158 Identities=15% Similarity=0.121 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHH
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVD 557 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 557 (784)
..+|-+.--+...|+++.|.+.|+...+. .|. ..++..-.-++...|+++-|.+-|...-++-.-.|-...|--++
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 45666666666677777777777776663 232 22333333344556677766665554433212222222222221
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-------cchHHHHHHHHHhcCC
Q 044131 558 ILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPEN-------VGYHVLLSNIYSAERD 630 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~-------~~~~~~l~~~y~~~g~ 630 (784)
.+.-+..+|..-+.+--.+-|..-|+.-+-.+..-.=-+ +.+++++.+-..++ ..+|.-|+..|...|.
T Consensus 177 --E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred --HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 223345555433322111344455555544333211111 11222222211111 3478889999999999
Q ss_pred hHHHHHHHHHHHh
Q 044131 631 YLQAATVRQVVKK 643 (784)
Q Consensus 631 ~~~a~~~~~~m~~ 643 (784)
.++|..+++....
T Consensus 253 ~~~A~~LfKLaia 265 (297)
T COG4785 253 LDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998654
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=83.29 E-value=68 Score=34.23 Aligned_cols=205 Identities=18% Similarity=0.254 Sum_probs=131.5
Q ss_pred cCCHHHHHHHHhhcCC----CCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHH
Q 044131 460 CGNIVEARELFDLMSH----KSEVTWNTMISGY-GLHGHGLEALQLFSEMLHSGIRPSG----VTFLSVLYACSHAGLVR 530 (784)
Q Consensus 460 ~g~~~~A~~~f~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~ 530 (784)
.|+.++|.+.+..+.. +....+-+|+.+- ....+..+|+++|++..- .-|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888888888888863 4555777777664 445678999999998876 34543 33444555678899999
Q ss_pred HHHHHHHHhHHhcCCCCCcchH-HHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044131 531 EGDEIFQSMIHDHGFKPLAEHY-ACMVDILGRAG---QLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEK 606 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~~~~~-~~lv~~l~r~g---~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 606 (784)
++..+-....+.|.-.|=...| .-++..+.+.+ ..+.-.+++..|.-.--..+|..+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9888888777777666654333 23334444333 4445555566664222345888888889999999999999999
Q ss_pred HhcCCCCCcchHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHH
Q 044131 607 LFELDPENVGYHVLLSNIYSAE-----RDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAML 681 (784)
Q Consensus 607 ~~~l~p~~~~~~~~l~~~y~~~-----g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l 681 (784)
+..+.+. ...-...+++|... .+.+++.+....+. .++.+|+-..+....
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~------------------------~~~L~~~Dr~Ll~AA 337 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQID------------------------RDKLSERDRALLEAA 337 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC------------------------hhhCChhhHHHHHHH
Confidence 9998743 33444555666543 33445444443322 223456656666555
Q ss_pred HHHHHHHHHc
Q 044131 682 EKLNGKMREA 691 (784)
Q Consensus 682 ~~l~~~~~~~ 691 (784)
..+-.++++.
T Consensus 338 ~~va~~V~~~ 347 (421)
T PRK12798 338 RSVARQVRRA 347 (421)
T ss_pred HHHHHHHhcC
Confidence 5555555543
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=82.74 E-value=22 Score=29.36 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044131 428 ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHS 507 (784)
Q Consensus 428 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (784)
.++|..|-+.+...+-. ...+.-.-+..+...|++++|..+.+....||...|-++-. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45555555555444311 22233333445678899999999999999999999988855 4678888888888888888
Q ss_pred CCCCCHHHHHH
Q 044131 508 GIRPSGVTFLS 518 (784)
Q Consensus 508 g~~pd~~t~~~ 518 (784)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 7 666666654
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=82.02 E-value=40 Score=34.95 Aligned_cols=126 Identities=14% Similarity=-0.015 Sum_probs=69.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHh---HHhcCCCCCcchHHHH
Q 044131 484 MISGYGLHGHGLEALQLFSEMLHSGIRP-----SGVTFLSVLYACSHAGLVREGDEIFQSM---IHDHGFKPLAEHYACM 555 (784)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~g~~p-----d~~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p~~~~~~~l 555 (784)
|..++.-.+.++++++.|+....--... .-..+.+|-+-+....++++|.-+.... ...+++.--..-|.++
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4455555566677777776655421111 1234666666666666777666554433 2223333222223332
Q ss_pred -----HHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 044131 556 -----VDILGRAGQLEKALEFIKGL-------AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFE 609 (784)
Q Consensus 556 -----v~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 609 (784)
.-+|-..|++-+|.+..++. +-.|- ......+...|+..|+.|.|..-|+.+..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 23445556665555555432 22221 22556677888888998888888887765
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.89 E-value=47 Score=31.41 Aligned_cols=114 Identities=14% Similarity=0.120 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHH-----HHHHHHhcCCHHHH
Q 044131 496 EALQLFSEMLHSGIRPSGVTFL--SVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYAC-----MVDILGRAGQLEKA 568 (784)
Q Consensus 496 ~A~~~~~~m~~~g~~pd~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----lv~~l~r~g~~~eA 568 (784)
+.....+++....-+...-++. .+..+....|++++|...++.... .|..+.+.. |...+...|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4555555665542222222222 234457778888888888886652 233344444 34567788999999
Q ss_pred HHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 569 LEFIKGLAVEPGPA--VWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 569 ~~~~~~m~~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
+..++... .++-. .-..-..++...|+-+.|+..|+++++.+++.
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99998654 22211 22223457888999999999999999987654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.99 E-value=84 Score=33.71 Aligned_cols=141 Identities=14% Similarity=0.098 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchH-HH
Q 044131 477 SEVTWNTMISGYGLHGHGLEALQLFSEMLHSG-IRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHY-AC 554 (784)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~ 554 (784)
-...|...|..-.+..-.+.|..+|-+..+.| +.++...+++.+.-+ ..|+...|..+|+.-...+ ||...| .-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f---~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKF---PDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhC---CCchHHHHH
Confidence 34567777777777777888888888888888 566766777776644 4577788888888765443 443333 44
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-C-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHH
Q 044131 555 MVDILGRAGQLEKALEFIKGL-A-VEPG--PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 555 lv~~l~r~g~~~eA~~~~~~m-~-~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 621 (784)
.++.+.+-++-+.|..+|+.. + +..+ ..+|..++.--..-|++..+..+-++..++-|.....-+.+
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~ 542 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFT 542 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHH
Confidence 567778888888888888854 1 3333 44888888888888888888888888888888765444433
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.69 E-value=9.8 Score=38.44 Aligned_cols=61 Identities=26% Similarity=0.135 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
..+.|-.++...++++.|.++.+.++.+.|+++.-.--.+-+|++.|.+..|..-++.--+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4567778899999999999999999999999998888899999999999999987665543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.66 E-value=5.7 Score=40.35 Aligned_cols=89 Identities=18% Similarity=0.122 Sum_probs=62.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcC
Q 044131 485 ISGYGLHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAG 563 (784)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g 563 (784)
..-|.+.|.+++|+..|.+... +.| |.+++..-..||.+...+..|..-....+. .-...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 3568999999999999998877 567 999999999999999888877766665542 1123456666665
Q ss_pred -------CHHHHHHHHHhC-CCCCCHHHH
Q 044131 564 -------QLEKALEFIKGL-AVEPGPAVW 584 (784)
Q Consensus 564 -------~~~eA~~~~~~m-~~~p~~~~~ 584 (784)
.++||.+=.+.. .++|+..-.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccHHH
Confidence 455555444443 367775433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=80.57 E-value=48 Score=30.69 Aligned_cols=54 Identities=13% Similarity=0.157 Sum_probs=26.9
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHH
Q 044131 250 GLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLL 303 (784)
Q Consensus 250 ~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 303 (784)
.+++.+...|++-+|.++.+....-+.+.-..++.+-.+.++..--..+|+-..
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555666666666655444334444445555555555444444444333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 86.4 bits (213), Expect = 2e-17
Identities = 90/606 (14%), Positives = 163/606 (26%), Gaps = 167/606 (27%)
Query: 123 DRSIGVLL-HGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMI 181
R LL +V FV L Y ++ S K + P T ++
Sbjct: 65 LRLFWTLLSKQEEMV-----QKFVEEVLRINY---KFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 182 SGL--------------------MKNCCFQDS----IWVFGDMVRNGGTWLDSTSVAAVL 217
L ++ + + + G ++ +G TW+
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-VLGSGKTWV--------- 166
Query: 218 PAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGE----VERAELLFRDIVR 273
+V ++QC ++ L C +E + L I
Sbjct: 167 --ALDV--CL-SYKVQCK-----MDFKIFWLN-----LKNCNSPETVLEMLQKLLYQIDP 211
Query: 274 PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCI 333
+ + + S R+LL S N + L+ V
Sbjct: 212 NWTSRSDHSSNIKL---RIHSIQAELRRLLKSKPYENCLLV--LLNVQNA-------KAW 259
Query: 334 HSFCLKSGIV---SNSSVLTALSTVYSRLNEMEAARKLFDES-SEKSLASWNAMIAGYTQ 389
++F L I+ V LS + ++ + L +
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY----LDCRP 315
Query: 390 NGLTEEA-------ISLFQEMQASKVA-------PNPVTVSSILSAC-AQLGAISLGKWV 434
L E +S+ E +A N +++I+ + L K
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 435 HELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHG 494
L F + ++ T L+ + + + + + S V S +
Sbjct: 376 DRLSV---FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 495 LEALQLFSEM--LHSGI---------RPSGVTFLSVL--YACSHAG--LVR----EGDEI 535
LE LH I S L Y SH G L E +
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 536 FQSMIHDHGF---KPLAEHYAC-----MVDILGRAGQLEKALEFIKGLAVEPGPAVWGAL 587
F+ + D F K + A +++ L QL+ +I + L
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTL---QQLKFYKPYIC-----DNDPKYERL 544
Query: 588 LGA-----------CMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAAT 636
+ A + K T+L R+A L E+ + +A
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIA------LMAEDEAI-------------FEEAH- 584
Query: 637 VRQVVK 642
+QV +
Sbjct: 585 -KQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 9e-06
Identities = 70/511 (13%), Positives = 147/511 (28%), Gaps = 152/511 (29%)
Query: 260 EVERAELLFRDIV---RPDLIS---CN-------AMISGYTCN------GKTESSLRLFR 300
E + ++DI+ + C +++S + +LRLF
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 301 QLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRL- 359
LL+ E + + ++ + Y F L + I + + S + RL
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKF----LMSPIKTEQRQP-----SMMTRMYIEQRDRLY 120
Query: 360 NEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNP-VTVSSI 418
N+ + K + L + L E++ P V +
Sbjct: 121 NDNQVFAKYNVSRLQPYLK---------LRQAL--------LELR-----PAKNVLI--- 155
Query: 419 LSACAQLGAISLGKWVHELVKS--------RNFESNIYVSTALIDMYAKCGNIVEARELF 470
LG+ GK + + I+ + N +
Sbjct: 156 ---DGVLGS---GKTW--VALDVCLSYKVQCKMDFKIF--------WLNLKNCNSPETVL 199
Query: 471 DLM---SHKSEVTWNTMISGYGLHGHGLEALQL-FSEMLHSGIRPSGVTFLSVLYACSHA 526
+++ ++ + W + + ++Q +L S + L VL
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC---LLVL------ 250
Query: 527 GLVREGD-----EIFQSMIHDHGFKPLA-EHYACMVDILGRAGQLEKALEFI-KGLAVEP 579
+ + + + K L + + D L A +L+ L +
Sbjct: 251 ------LNVQNAKAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 580 GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAE-RDYLQAATVR 638
++ L + + +L E + + +I + RD L
Sbjct: 303 VKSL---------------LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 639 QVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQ---- 694
+ V KL IE S + L P M ++L + F
Sbjct: 348 KHVNCDKLTTI-----IES--------SLNVLEPAE--YRKMFDRL------SVFPPSAH 386
Query: 695 --TETVTAL-HDVEEEEKELMM-KVHSEKLA 721
T ++ + DV + + +++ K+H L
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 73.7 bits (179), Expect = 2e-13
Identities = 27/231 (11%), Positives = 71/231 (30%), Gaps = 9/231 (3%)
Query: 358 RLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSS 417
R+ ++A ++ +S E + + + + A L + + +P ++
Sbjct: 40 RMQRLKAKLQMPFQSGEFK--ALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLAR 97
Query: 418 ILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKS 477
+L ++ + + A + A L + +
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157
Query: 478 E-------VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVR 530
+ +N ++ G+ G E + + + +G+ P +++ + L
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
Query: 531 EGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGP 581
E + G K A A ++ RA L+ + ++ P
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 3e-04
Identities = 42/307 (13%), Positives = 86/307 (28%), Gaps = 33/307 (10%)
Query: 356 YSRLNEMEAARKLFDESS-----------EKSLASWNAMIAGYTQNGLTEEAISLFQEMQ 404
E E K D ++ + + W I N L E +L +
Sbjct: 198 RRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKR- 256
Query: 405 ASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIV 464
V C + W + E + + DM
Sbjct: 257 ----------VMFAYEQCLLVLGHHPDIWYEAA---QYLEQSSKLLAEKGDMNNAKLFSD 303
Query: 465 EARELFDLMSH----KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVL 520
EA +++ K+ + + + +++ +L + ++ +
Sbjct: 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYM 363
Query: 521 YACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALE-FIKGLAVEP 579
A ++ G IF+ D + A ++ + A + F GL
Sbjct: 364 KFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM-EYYCSKDKSVAFKIFELGLKKYG 422
Query: 580 G-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSA-ERDYLQAATV 637
P A + + N RV E++ + + A E + A++
Sbjct: 423 DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482
Query: 638 RQVVKKR 644
+V K+R
Sbjct: 483 LKVEKRR 489
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 784 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.8 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.73 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.73 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.73 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.71 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.71 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.67 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.67 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.67 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.67 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.65 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.65 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.59 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.59 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.59 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.58 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.53 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.53 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.5 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.49 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.46 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.44 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.44 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.43 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.43 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.41 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.4 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.4 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.39 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.38 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.37 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.37 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.37 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.35 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.35 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.34 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.33 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.33 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.33 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.32 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.31 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.31 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.29 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.26 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.24 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.23 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.23 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.21 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.17 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.16 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.16 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.16 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.16 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.15 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.15 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.15 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.13 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.12 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.11 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.11 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.05 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.01 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.94 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.93 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.92 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.91 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.9 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.88 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.88 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.82 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.81 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.81 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.8 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.79 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.79 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.78 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.75 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.72 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.71 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.7 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.69 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.65 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.64 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.63 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.63 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.61 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.61 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.61 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.6 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.59 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.56 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.53 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.51 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.49 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.49 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.48 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.47 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.47 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.46 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.45 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.45 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.44 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.44 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.42 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.4 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.4 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.39 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.36 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.36 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.35 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.35 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.33 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.3 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.28 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.28 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.25 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.23 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.23 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.23 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.23 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.21 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.21 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.18 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.18 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.16 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.15 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.15 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.15 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.12 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.12 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.11 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.09 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.09 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.09 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.08 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.08 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.07 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.06 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.05 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.03 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.02 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.02 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.0 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.99 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.98 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.98 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.97 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.96 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.96 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.93 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.92 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.87 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.86 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.86 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.84 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.84 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.82 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.81 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.81 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.8 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.78 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.77 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.77 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.77 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.76 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.73 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.72 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.72 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.71 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.69 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.68 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.65 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.6 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.59 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.57 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.57 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.54 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.44 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.42 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.4 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.34 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.21 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.15 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.13 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.1 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.98 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.91 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.88 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.88 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.84 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.76 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.73 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.67 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.6 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.51 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.42 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.34 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.33 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.27 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.05 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.83 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.68 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.56 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.28 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.93 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.72 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.36 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.18 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.7 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.59 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.28 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.3 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.26 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 91.9 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.38 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.14 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.04 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 86.28 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 85.59 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 85.34 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 85.3 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.96 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 84.54 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 84.34 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 84.06 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 83.87 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 83.3 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 83.07 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 82.54 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 81.99 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.16 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-43 Score=402.38 Aligned_cols=523 Identities=10% Similarity=-0.039 Sum_probs=363.8
Q ss_pred chhHHHHHHHHHHhCCCCChhhHhHHHHHhhCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHhh
Q 044131 22 QSQLTQTHAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSIPKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKN 101 (784)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~ 101 (784)
....+++|......++..+.. ..+...+.++|.+..++..|+.++.+++..|+.++..|.+.|++++|+. +|+.|..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~-~~~~~~~ 112 (597)
T 2xpi_A 36 MGALNANNSNSQLSTLTISPM--TYLANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAF-VGEKVLD 112 (597)
T ss_dssp ---------CTTSCGGGGCGG--GGGC---------------------CHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred HHHHhhccccccccceeechh--hhhcccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHH-HHHHHHh
Confidence 333444555444333332222 2233456788999999999999999999999999999999999999999 9999984
Q ss_pred CCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCC-CC--------
Q 044131 102 TALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMP-EK-------- 172 (784)
Q Consensus 102 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~-~~-------- 172 (784)
..|+..++..+..+|.+.|+++.|..+++.+... ++++.+++.++.+|.++|++++|+++|+++. ..
T Consensus 113 --~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 188 (597)
T 2xpi_A 113 --ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANK 188 (597)
T ss_dssp --HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC--------
T ss_pred --hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccc
Confidence 5688899999999999999999999999987644 6889999999999999999999999999544 33
Q ss_pred ----------CcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhh-HHhHHHHHhcccchh--HHHHH-HHHHHH
Q 044131 173 ----------DTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTS-VAAVLPAVAEVQELR--LGMEI-QCLGLK 238 (784)
Q Consensus 173 ----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~~~ll~a~~~~~~~~--~a~~~-~~~~~~ 238 (784)
++.+|+.++.+|.+.|++++|+++|++|.+. .|+..+ +..+...+...+..+ .+..+ +..+..
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (597)
T 2xpi_A 189 LLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV---DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265 (597)
T ss_dssp --CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHG
T ss_pred ccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHhhcccchhHHHHHHhcCCccccc
Confidence 4789999999999999999999999999875 355443 333333332222211 12222 444555
Q ss_pred hCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHh
Q 044131 239 LGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR--PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVG 316 (784)
Q Consensus 239 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 316 (784)
.+..+...+++.++.+|.++|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|++|...+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------- 335 (597)
T 2xpi_A 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID---------- 335 (597)
T ss_dssp GGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred chHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC----------
Confidence 55556667788889999999999999999999977 888899999999999999999999999987653
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCCh
Q 044131 317 LIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESS---EKSLASWNAMIAGYTQNGLT 393 (784)
Q Consensus 317 ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 393 (784)
+.+..+++.++..|.+.|++++|.++|+.+. ..+..+|+.++..|.+.|++
T Consensus 336 --------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 336 --------------------------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp --------------------------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCH
T ss_pred --------------------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccH
Confidence 1122334444445555555555555555432 22445566666666666666
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhc
Q 044131 394 EEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLM 473 (784)
Q Consensus 394 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 473 (784)
++|.++|+++... . +.+..+++.++.+|.+.|++++|.++|+++
T Consensus 390 ~~A~~~~~~~~~~-----------------------------------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 390 SEARRYFSKSSTM-----------------------------------D-PQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHHHH-----------------------------------C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----------------------------------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666555442 1 234455666666666666666666666655
Q ss_pred C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc---CCCC
Q 044131 474 S---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDH---GFKP 547 (784)
Q Consensus 474 ~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p 547 (784)
. ..+..+|+.++.+|.+.|++++|+++|++|.+.. +.+..+|..+...|.+.|++++|.++|+++.+.. +..|
T Consensus 434 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p 512 (597)
T 2xpi_A 434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512 (597)
T ss_dssp HHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch
Confidence 3 2366677777777777777777777777777643 3456777777777777777888877777776432 5567
Q ss_pred C--cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 044131 548 L--AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSN 623 (784)
Q Consensus 548 ~--~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 623 (784)
+ ..+|..++.+|.+.|++++|.++++++. ..| +..+|..+..+|...|++++|...++++++++|+++..+..|++
T Consensus 513 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 513 KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592 (597)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 6 6788888888888888888888888763 334 77899999999999999999999999999999999999999998
Q ss_pred HHHh
Q 044131 624 IYSA 627 (784)
Q Consensus 624 ~y~~ 627 (784)
+|..
T Consensus 593 ~~~~ 596 (597)
T 2xpi_A 593 ALEE 596 (597)
T ss_dssp TTC-
T ss_pred HHhc
Confidence 8754
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-42 Score=394.14 Aligned_cols=480 Identities=11% Similarity=-0.015 Sum_probs=402.8
Q ss_pred HhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHH
Q 044131 152 LYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGME 231 (784)
Q Consensus 152 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 231 (784)
.+.++|.+..++..|+.++.+++..|+.++.+|.+.|++++|+.+|++|.. ..||..++..+..+|...|+++.|..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 456788889999999999999999999999999999999999999999984 46888999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-CC------------------CeeeHHHHHHHHHhCCCc
Q 044131 232 IQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIV-RP------------------DLISCNAMISGYTCNGKT 292 (784)
Q Consensus 232 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-~~------------------d~~~~~~li~~~~~~g~~ 292 (784)
++..++.. +++..+++.++.+|.++|++++|.++|+++. .. ++.+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99987643 6889999999999999999999999999653 33 478999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCChh-hHHhHHHhhcCCCChhH--HHHH-HHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHH
Q 044131 293 ESSLRLFRQLLASAERVNSS-TIVGLIPVFYPFGHLHL--TNCI-HSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKL 368 (784)
Q Consensus 293 ~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~--a~~i-~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 368 (784)
++|+++|++|.+.+ |+.. .+..+...+...+..+. ...+ +..+...+......+++.++.+|.++|++++|.++
T Consensus 217 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 217 DRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 99999999999864 4433 34444433333222111 1111 34444445556667788889999999999999999
Q ss_pred HhhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCc
Q 044131 369 FDESSE--KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESN 446 (784)
Q Consensus 369 f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 446 (784)
|+++.+ ++..+|+.++.+|.+.|++++|+++|++|...+ +.+..++..++.++...|+.++|.+++..+.+.. +.+
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 999987 799999999999999999999999999999765 3467889999999999999999999999999764 667
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYAC 523 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 523 (784)
..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 8999999999999999999999999875 4578899999999999999999999999999864 45789999999999
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhc
Q 044131 524 SHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-------AVEPG--PAVWGALLGACMIH 594 (784)
Q Consensus 524 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~--~~~~~~ll~a~~~~ 594 (784)
.+.|++++|.++|+++.+.. +.+...|.+++.+|.+.|++++|.++++++ +..|+ ..+|..++.+|..+
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 99999999999999998642 335789999999999999999999999887 45787 78999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 595 KDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 595 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
|++++|...++++++++|+++..|..++++|...|+|++|.+.++.+.+
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998876
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=256.73 Aligned_cols=184 Identities=13% Similarity=0.110 Sum_probs=172.4
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhC---------chHHHHHHHHHHHHcCCCCchh
Q 044131 378 ASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLG---------AISLGKWVHELVKSRNFESNIY 448 (784)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~---------~~~~a~~i~~~~~~~g~~~~~~ 448 (784)
..++.+|.+|++.|+.++|+++|++|.+.|++||.+||+++|.+|+..+ .++.|.++++.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 4688899999999999999999999999999999999999999998755 3688999999999999999999
Q ss_pred hHhHHHHHHHhcCCHHHHHHHHhhcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044131 449 VSTALIDMYAKCGNIVEARELFDLMS----HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACS 524 (784)
Q Consensus 449 ~~~~Li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 524 (784)
+||+||++|+++|++++|.++|++|. .||.++||+||.+|++.|+.++|.++|++|.+.|+.||..||++|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999997 58999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhc
Q 044131 525 HAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRA 562 (784)
Q Consensus 525 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~ 562 (784)
+.|++++|.++|++|.+ .++.|+..+|+.+++.|.+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999975 49999999999999998764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-23 Score=228.21 Aligned_cols=372 Identities=13% Similarity=0.088 Sum_probs=269.4
Q ss_pred HHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCch
Q 044131 217 LPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR---PDLISCNAMISGYTCNGKTE 293 (784)
Q Consensus 217 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~ 293 (784)
...+...|++++|.+.+..+++.. +.+...+..+...+.+.|++++|...++.... .+..+|+.+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345566778888888877777653 33455666667777777888888777766532 34556777777777777777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 044131 294 SSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESS 373 (784)
Q Consensus 294 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 373 (784)
+|+..|+++... .|+ +...+..+...|.+.|++++|.+.|+++.
T Consensus 85 ~A~~~~~~al~~--~p~----------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al 128 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPD----------------------------------FIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp HHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--Ccc----------------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777654 222 23344455555555555555555555433
Q ss_pred C---CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhH
Q 044131 374 E---KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVS 450 (784)
Q Consensus 374 ~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 450 (784)
. .+...|..+...|.+.|++++|.+.|+++.... +.+..++..+...+...|+++.|...++.+.+.. +.+...+
T Consensus 129 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 206 (388)
T 1w3b_A 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAY 206 (388)
T ss_dssp HHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHH
Confidence 1 233455555566666666666666666665531 2234556666666666666666666666666654 3456667
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044131 451 TALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAG 527 (784)
Q Consensus 451 ~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 527 (784)
..+...|...|++++|...|++.. ..+..+|..+...|...|++++|++.|+++.+.. +.+..++..+..++...|
T Consensus 207 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC
Confidence 777788888888888888887664 3457788889999999999999999999998853 334667888889999999
Q ss_pred CHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044131 528 LVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASE 605 (784)
Q Consensus 528 ~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~ 605 (784)
++++|.++|+.+.+. .+++...+..+..++.+.|++++|.+.++++. ..| +..+|..+..++...|++++|...++
T Consensus 286 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 286 SVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998854 23457888999999999999999999998873 445 57789999999999999999999999
Q ss_pred HHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 606 KLFELDPENVGYHVLLSNIYSAERD 630 (784)
Q Consensus 606 ~~~~l~p~~~~~~~~l~~~y~~~g~ 630 (784)
++++++|+++..|..++.+|...|+
T Consensus 364 ~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 364 EAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999887764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=255.20 Aligned_cols=206 Identities=11% Similarity=0.060 Sum_probs=150.6
Q ss_pred HHHHHhhCCCCCCc-ccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCCC
Q 044131 95 YTHLRKNTALTPDN-FTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKD 173 (784)
Q Consensus 95 ~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~ 173 (784)
+.+.+.+.+..+.+ ..++.+|.+|++.|++++|.++++.|.+.|+.||.++||+||.+|++.+...++
T Consensus 12 L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~----------- 80 (501)
T 4g26_A 12 LSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES----------- 80 (501)
T ss_dssp ------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-----------
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-----------
Confidence 66667666665443 357778888888888888888888888888888888888888888877654322
Q ss_pred cccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 044131 174 TVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVS 253 (784)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 253 (784)
.+.+..++|+++|++|... |+.||..||++++.+|++.|+++.|.+++..|.+.|+.||..+||+||.
T Consensus 81 -----------~~~~~l~~A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~ 148 (501)
T 4g26_A 81 -----------SPNPGLSRGFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALF 148 (501)
T ss_dssp -----------SCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred -----------hhcchHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHH
Confidence 2344567889999999988 8999999999999999999999999999999888888888888888888
Q ss_pred HHHhcCChHHHHHHHhcC----CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcC
Q 044131 254 FYSKCGEVERAELLFRDI----VRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYP 323 (784)
Q Consensus 254 ~y~~~g~~~~A~~~f~~~----~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 323 (784)
+|++.|++++|.++|++| ..||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..+..
T Consensus 149 ~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 149 GFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 877777777777777776 3366777777777777777777777777777777777777777666665543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-23 Score=224.00 Aligned_cols=349 Identities=13% Similarity=0.117 Sum_probs=291.3
Q ss_pred HHHHhCCCchHHHHHHHHHHHcCCCCCh-hhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCH
Q 044131 284 SGYTCNGKTESSLRLFRQLLASAERVNS-STIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEM 362 (784)
Q Consensus 284 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 362 (784)
..+.+.|++++|++.++++.+. .|+. ..+..+...+...++++.+...+...++.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 3445566666666666665554 2333 333344445555666666666666666543 56778899999999999999
Q ss_pred HHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhhCchHHHHHHHHHH
Q 044131 363 EAARKLFDESS---EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNP-VTVSSILSACAQLGAISLGKWVHELV 438 (784)
Q Consensus 363 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~ 438 (784)
++|.+.|+++. ..+..+|..+...|.+.|++++|++.|+++... .|+. ..+..+...+...|++++|.+.+..+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999864 345668999999999999999999999999875 4554 45666777888899999999999999
Q ss_pred HHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH
Q 044131 439 KSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-SGV 514 (784)
Q Consensus 439 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~ 514 (784)
.+.. +.+..+++.+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|++..+. .| +..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHH
Confidence 9875 5567889999999999999999999999886 345778999999999999999999999999884 45 567
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGAC 591 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~ 591 (784)
++..+..++...|++++|.+.|+.+.+ +.|+ ...|..+...|.+.|++++|.+.++++. .+++..+|..+...+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 888999999999999999999999985 3454 6789999999999999999999999873 355788999999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 592 MIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...|++++|...+++++++.|+++..+..++.+|...|++++|.+.++.+.+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998875
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-22 Score=221.67 Aligned_cols=335 Identities=12% Similarity=0.080 Sum_probs=232.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHh
Q 044131 244 HVYVLTGLVSFYSKCGEVERAELLFRDIVR---PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPV 320 (784)
Q Consensus 244 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 320 (784)
+...+..+...|.+.|++++|..+|+++.+ .+..+|..+...|.+.|++++|+..|+++.+.+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 90 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-------------- 90 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 444555555666666666666666655422 344455555555555555555555555554431
Q ss_pred hcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---Ch---hHHHHHHHHHHhCCChh
Q 044131 321 FYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEK---SL---ASWNAMIAGYTQNGLTE 394 (784)
Q Consensus 321 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~---~~~~~li~~~~~~g~~~ 394 (784)
+.+..++..+..+|.+.|++++|.+.|+.+... +. ..|..++..+...+
T Consensus 91 ----------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 145 (450)
T 2y4t_A 91 ----------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR--- 145 (450)
T ss_dssp ----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---
T ss_pred ----------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH---
Confidence 223344555555555555555555555554332 12 34444433321111
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC
Q 044131 395 EAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS 474 (784)
Q Consensus 395 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~ 474 (784)
+......+...|+++.|...+..+.+.. +.+..++..+..+|.++|++++|...|+++.
T Consensus 146 --------------------~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 204 (450)
T 2y4t_A 146 --------------------LRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAAS 204 (450)
T ss_dssp --------------------HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred --------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1122333556677777777777777654 4567788888889999999999999988875
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHH------------HHHHHccCCHHHHHHHHHH
Q 044131 475 ---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVT-FLSV------------LYACSHAGLVREGDEIFQS 538 (784)
Q Consensus 475 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-~~~l------------l~a~~~~g~~~~a~~~~~~ 538 (784)
..+..+|+.+...|...|++++|+..|+++.+. .|+... +..+ ..+|.+.|++++|..+|+.
T Consensus 205 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 282 (450)
T 2y4t_A 205 KLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES 282 (450)
T ss_dssp HHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 357889999999999999999999999999874 555443 3333 7889999999999999999
Q ss_pred hHHhcCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 044131 539 MIHDHGFKPL-----AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELD 611 (784)
Q Consensus 539 m~~~~~~~p~-----~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~ 611 (784)
+.+. .|+ ..+|.+++.++.+.|++++|.+.++++ ...| +..+|..+..+|...|+++.|...++++++++
T Consensus 283 ~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 283 VMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9864 455 458999999999999999999999986 3445 68899999999999999999999999999999
Q ss_pred CCCcchHHHHH------------HHHHhcC--ChHHHHHHHHHHHh
Q 044131 612 PENVGYHVLLS------------NIYSAER--DYLQAATVRQVVKK 643 (784)
Q Consensus 612 p~~~~~~~~l~------------~~y~~~g--~~~~a~~~~~~m~~ 643 (784)
|+++..+..++ +.|...| ++....++++.+++
T Consensus 360 p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 360 ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 99999999999 5577777 33333334444433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-21 Score=218.53 Aligned_cols=428 Identities=11% Similarity=-0.033 Sum_probs=285.5
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 044131 176 LWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFY 255 (784)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 255 (784)
.|......+.+.|++++|+..|+++... .||..++..+..++...|+++.|...+..+++.. +.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 4555666677777777777777777765 2677777777777777777777777777777654 33556777777777
Q ss_pred HhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCC-------------------CCChhh
Q 044131 256 SKCGEVERAELLFRDIVR---PDLISCNAMISGYTCNGKTESSLRLFRQLLASAE-------------------RVNSST 313 (784)
Q Consensus 256 ~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-------------------~p~~~t 313 (784)
.+.|++++|...|+++.. .+......++..+........+.+.+..+...+. .|+...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 777777777777776632 2233333344333332222222222222221111 122222
Q ss_pred HHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHh---cCCHHHHHHHHhhcCC----------------
Q 044131 314 IVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSR---LNEMEAARKLFDESSE---------------- 374 (784)
Q Consensus 314 ~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~---~g~~~~A~~~f~~~~~---------------- 374 (784)
....+..+........ ..-+.+...+..+...+.. .|++++|...|+++..
T Consensus 164 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (514)
T 2gw1_A 164 MASFFGIFKPELTFAN----------YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK 233 (514)
T ss_dssp HHHHHTTSCCCCCCSS----------CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHH
T ss_pred HHHHHhhcCHHHHHHH----------hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccC
Confidence 2222221111111000 0002234444444444444 7888888888876543
Q ss_pred C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHH
Q 044131 375 K-SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTAL 453 (784)
Q Consensus 375 ~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~L 453 (784)
+ +...|..+...|...|++++|+..|+++.... |+...+..+...+...|+++.|...+..+.+.. +.+..++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 310 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHR 310 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHH
Confidence 1 24567788888888888899988888887754 447777778888888888888888888887764 4466778888
Q ss_pred HHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 044131 454 IDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVR 530 (784)
Q Consensus 454 i~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 530 (784)
...|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|+++
T Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHH
Confidence 888888888888888888764 3466788888888888888888888888888752 335667778888888888888
Q ss_pred HHHHHHHHhHHhcCCCCC----cchHHHHHHHHHh---cCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 044131 531 EGDEIFQSMIHDHGFKPL----AEHYACMVDILGR---AGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLAR 601 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r---~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~ 601 (784)
+|..+|+.+.+...-.|+ ...+..+...+.+ .|++++|.+.++++. ..| +..+|..+...+...|+++.|.
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH
Confidence 888888888754322222 2378888888888 888888888887762 334 5668888888888888888888
Q ss_pred HHHHHHhcCCCCCcchHHHH
Q 044131 602 VASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 602 ~~~~~~~~l~p~~~~~~~~l 621 (784)
..++++++++|+++..+..+
T Consensus 470 ~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 470 TLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHH
Confidence 88888888888877766655
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.5e-21 Score=213.28 Aligned_cols=424 Identities=9% Similarity=-0.041 Sum_probs=316.1
Q ss_pred hHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHh
Q 044131 212 SVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR---PDLISCNAMISGYTC 288 (784)
Q Consensus 212 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~ 288 (784)
.+...-..+...|++++|...+..+++.. |+...+..+..+|.+.|++++|...|+++.+ .+...|..+...|.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 45556667788999999999999999976 6889999999999999999999999998743 455678899999999
Q ss_pred CCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHH---HHHHHHHhcCCHHHH
Q 044131 289 NGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLT---ALSTVYSRLNEMEAA 365 (784)
Q Consensus 289 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~---~Li~~y~~~g~~~~A 365 (784)
.|++++|+..|+++...+. ++......++..+........+.+.++.+.+.+..++....+ ..............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999988763 344444444433322222222222121111111111000000 000111111122222
Q ss_pred HHHHhhcCC---------C-ChhHHHHHHHHHHh---CCChhHHHHHHHHHHh-----CCCCC--------CHHHHHHHH
Q 044131 366 RKLFDESSE---------K-SLASWNAMIAGYTQ---NGLTEEAISLFQEMQA-----SKVAP--------NPVTVSSIL 419 (784)
Q Consensus 366 ~~~f~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~p--------d~~t~~~ll 419 (784)
...+..... + +...|......+.. .|++++|+..|+++.. ..-.| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 222222221 1 23455555555554 8999999999999987 32122 345677788
Q ss_pred HHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHH
Q 044131 420 SACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLE 496 (784)
Q Consensus 420 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 496 (784)
..+...|+++.|...+..+.+.... ..++..+...|.+.|++++|...|+++.. .+...|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8899999999999999999987633 88889999999999999999999998753 467899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 044131 497 ALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL- 575 (784)
Q Consensus 497 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m- 575 (784)
|+..|+++.+.. +.+..++..+...+...|++++|..+|+.+.+.. +.+...+..+...+.+.|++++|.+.++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999863 3356788889999999999999999999998642 224678899999999999999999999876
Q ss_pred ---CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 576 ---AVEPG----PAVWGALLGACMI---HKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 576 ---~~~p~----~~~~~~ll~a~~~---~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
|-.|+ ..+|..+...+.. .|+++.|...++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 22333 4489999999999 99999999999999999999999999999999999999999999988776
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-19 Score=205.41 Aligned_cols=419 Identities=12% Similarity=0.046 Sum_probs=237.9
Q ss_pred cccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 044131 174 TVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVS 253 (784)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 253 (784)
...|..+...+.+.|++++|++.|+++... .+.+..++..+..++...|+++.|.+.+..+++.. +.+...+..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 345677777888888888888888888764 23355677777777788888888888888887765 346778888889
Q ss_pred HHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHc------CCCCChhhHHhHHHhhcCCCCh
Q 044131 254 FYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLAS------AERVNSSTIVGLIPVFYPFGHL 327 (784)
Q Consensus 254 ~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~ 327 (784)
.|.+.|++++|...|+.+ ..+....+..+..+...+...+|+..++++... ...|+...+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----------- 169 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----------- 169 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH-----------
T ss_pred HHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH-----------
Confidence 999999999999999744 323333344455666666778888888888543 12233322222
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh---HHHHHHHHHHh--------CCChhHH
Q 044131 328 HLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLA---SWNAMIAGYTQ--------NGLTEEA 396 (784)
Q Consensus 328 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~--------~g~~~~A 396 (784)
|....+.+.+...+......+.. .+..+...+.. .|++++|
T Consensus 170 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 221 (537)
T 3fp2_A 170 ----------------------------FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221 (537)
T ss_dssp ----------------------------HHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred ----------------------------HHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 22333334444444333332221 22222222111 1245555
Q ss_pred HHHHHHHHhCCCCCC--------HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHH
Q 044131 397 ISLFQEMQASKVAPN--------PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARE 468 (784)
Q Consensus 397 ~~l~~~m~~~g~~pd--------~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 468 (784)
+.+|+++... .|+ ..++..+...+...|+++.|...+..+.+.. |+..++..+...|.+.|++++|..
T Consensus 222 ~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 222 TDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHH
T ss_pred HHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHH
Confidence 5555555543 222 1123333344445555556665555555543 234555555555666666666666
Q ss_pred HHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC
Q 044131 469 LFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGF 545 (784)
Q Consensus 469 ~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 545 (784)
.|+++. ..+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|.++|+.+.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 373 (537)
T 3fp2_A 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--- 373 (537)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 665543 2345556666666666666666666666666532 223445555666666666666666666666543
Q ss_pred CCC-cchHHHHHHHHHhcCCHHHHHHHHHhC----C----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHH
Q 044131 546 KPL-AEHYACMVDILGRAGQLEKALEFIKGL----A----VEPGPAVWGALLGACMIH----------KDTNLARVASEK 606 (784)
Q Consensus 546 ~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m----~----~~p~~~~~~~ll~a~~~~----------g~~~~a~~~~~~ 606 (784)
.|+ ...+..+...+.+.|++++|.+.++++ | .......+..+...+... |+++.|...+++
T Consensus 374 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 453 (537)
T 3fp2_A 374 FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK 453 (537)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHH
Confidence 232 445566666666666666666666553 1 011122233334445555 667777777777
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 607 LFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 607 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 454 a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 454 ACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7777777776777777777777777777776666544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-19 Score=196.56 Aligned_cols=295 Identities=11% Similarity=0.040 Sum_probs=240.7
Q ss_pred CcchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044131 343 VSNSSVLTALSTVYSRLNEMEAARKLFDESS---EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSIL 419 (784)
Q Consensus 343 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 419 (784)
+.+...+..+...|.+.|++++|..+|+.+. ..+..+|..+...|.+.|++++|+..|+++...+ +.+...+..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 4456677777888888888888888887654 3466778888888888888888888888877653 33466777777
Q ss_pred HHHhhhCchHHHHHHHHHHHHcCCCCch---hhHhHH------------HHHHHhcCCHHHHHHHHhhcC---CCCHHHH
Q 044131 420 SACAQLGAISLGKWVHELVKSRNFESNI---YVSTAL------------IDMYAKCGNIVEARELFDLMS---HKSEVTW 481 (784)
Q Consensus 420 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~---~~~~~L------------i~~y~k~g~~~~A~~~f~~~~---~~~~~~~ 481 (784)
.++...|++++|...+..+.+.. +.+. ..+..+ ...|.+.|++++|...|+++. ..+...|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 78888888888888888877654 2333 444444 445899999999999999876 3578899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHH-----
Q 044131 482 NTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACM----- 555 (784)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l----- 555 (784)
..+...|.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|..+|+.+.+. .|+ ...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHH
Confidence 999999999999999999999998853 456788999999999999999999999999843 555 3444444
Q ss_pred -------HHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHH
Q 044131 556 -------VDILGRAGQLEKALEFIKGL-AVEPG-----PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLS 622 (784)
Q Consensus 556 -------v~~l~r~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 622 (784)
...+.+.|++++|.+.++++ ...|+ ...|..+..++...|+++.|...++++++++|+++..+..++
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 88999999999999999887 24454 447888899999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 044131 623 NIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 623 ~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.+|...|++++|.+.++...+
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999998876
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-18 Score=196.60 Aligned_cols=435 Identities=9% Similarity=-0.032 Sum_probs=275.9
Q ss_pred HHHHHHhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcc
Q 044131 147 AALVDLYFKFSWVKSARKVFDKMPE---KDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEV 223 (784)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~ 223 (784)
..+...|.+.|++++|.+.|++... .+..+|..+..+|.+.|++++|++.|++.... -+.+..++..+..++...
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHc
Confidence 3344444455555555555544431 23444555555555555555555555555433 122233444444555555
Q ss_pred cchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC------CeeeHHHHHHHHHhCCCchHHHH
Q 044131 224 QELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRP------DLISCNAMISGYTCNGKTESSLR 297 (784)
Q Consensus 224 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------d~~~~~~li~~~~~~g~~~~A~~ 297 (784)
|++++|...+. .+.. .|+ ..+..+..+...+....|...++.+... .....+..+..+....+.+.++.
T Consensus 107 g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 107 GNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp TCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 55555555553 2211 111 1112233344444455666666665331 22223444555555555555544
Q ss_pred HHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC--
Q 044131 298 LFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEK-- 375 (784)
Q Consensus 298 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-- 375 (784)
.+...... .+....+...+...... . .-......|++++|..+|+.+...
T Consensus 182 ~~~~~~~~--~~~~~~~~~~l~~~~~~--------------------~------~~~~~~a~~~~~~A~~~~~~~l~~~p 233 (537)
T 3fp2_A 182 SVNTSSNY--DTAYALLSDALQRLYSA--------------------T------DEGYLVANDLLTKSTDMYHSLLSANT 233 (537)
T ss_dssp TSCCCCSS--CSSHHHHHHHHHHHHTC--------------------S------HHHHHHHHHHHHHHHHHHHHHHC--C
T ss_pred HHhhcccc--ccHHHHHHHHHHHHHHh--------------------h------hhhhHHHHHHHHHHHHHHHHHHHHCC
Confidence 43332111 11111111111100000 0 000111234677777777766543
Q ss_pred -C-------hhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCch
Q 044131 376 -S-------LASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNI 447 (784)
Q Consensus 376 -~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 447 (784)
+ ..+|..+...+...|++++|+..|++.... .|+...+..+...+...|+++.|...+..+.+.. +.+.
T Consensus 234 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 310 (537)
T 3fp2_A 234 VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYP 310 (537)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCH
T ss_pred CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCH
Confidence 2 224666777888899999999999999875 5667888888889999999999999999998875 5567
Q ss_pred hhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044131 448 YVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACS 524 (784)
Q Consensus 448 ~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 524 (784)
.++..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+.
T Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 889999999999999999999999875 3467899999999999999999999999999863 445668888999999
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHHhc----------CCHHHHHHHHHhCC-CCC-CHHHHHHHH
Q 044131 525 HAGLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILGRA----------GQLEKALEFIKGLA-VEP-GPAVWGALL 588 (784)
Q Consensus 525 ~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r~----------g~~~eA~~~~~~m~-~~p-~~~~~~~ll 588 (784)
..|++++|.+.|+.+.+...-.+. ...+......|.+. |++++|...+++.- ..| +..+|..+.
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 469 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999998754321122 12244556777777 99999999998873 344 577999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCcchHHH
Q 044131 589 GACMIHKDTNLARVASEKLFELDPENVGYHVL 620 (784)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 620 (784)
..+...|+.+.|...+++++++.|+++.....
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999999999999999999999998766543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-16 Score=169.19 Aligned_cols=291 Identities=11% Similarity=0.027 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 044131 347 SVLTALSTVYSRLNEMEAARKLFDESS---EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACA 423 (784)
Q Consensus 347 ~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 423 (784)
..+..+...|.+.|++++|...|+... ..+...|..+...|...|++++|+..|+++.... +.+...+..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 334445555555555555555555432 2234455555555555555555555555555431 123445555555555
Q ss_pred hhCchHHHHHHHHHHHHcCCC---CchhhHhHH------------HHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHH
Q 044131 424 QLGAISLGKWVHELVKSRNFE---SNIYVSTAL------------IDMYAKCGNIVEARELFDLMS---HKSEVTWNTMI 485 (784)
Q Consensus 424 ~~~~~~~a~~i~~~~~~~g~~---~~~~~~~~L------------i~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li 485 (784)
..|+++.|...+..+.+.. + .+...+..+ ...|...|++++|...|+++. ..+...|..+.
T Consensus 83 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 5555555555555555432 1 223333333 567888888888888888765 34677888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHH-----------
Q 044131 486 SGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYA----------- 553 (784)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~----------- 553 (784)
..|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+...+. .|+ ...+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHH
Confidence 88888888888888888888753 446677888888888888888888888888754 344 22222
Q ss_pred -HHHHHHHhcCCHHHHHHHHHhCC-CCCC-HH----HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 554 -CMVDILGRAGQLEKALEFIKGLA-VEPG-PA----VWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 554 -~lv~~l~r~g~~~eA~~~~~~m~-~~p~-~~----~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
.+...+.+.|++++|.+.+++.. ..|+ .. .|..+..++...|+++.|...++++++++|+++..+..++.+|.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 23667889999999999988762 3343 32 35557778889999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHh
Q 044131 627 AERDYLQAATVRQVVKK 643 (784)
Q Consensus 627 ~~g~~~~a~~~~~~m~~ 643 (784)
..|++++|.+.++...+
T Consensus 318 ~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 99999999999988775
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-16 Score=170.39 Aligned_cols=307 Identities=12% Similarity=0.048 Sum_probs=228.7
Q ss_pred eeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 044131 277 ISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVY 356 (784)
Q Consensus 277 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 356 (784)
..|..+...+.+.|++++|+..|+++.... +.+..++..+...|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~------------------------------------p~~~~~~~~~a~~~ 47 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD------------------------------------PDNYIAYYRRATVF 47 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------------------------------------cccHHHHHHHHHHH
Confidence 345666677777888888888888776542 22334455555666
Q ss_pred HhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC---C-HHHHHHH-----------
Q 044131 357 SRLNEMEAARKLFDESS---EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAP---N-PVTVSSI----------- 418 (784)
Q Consensus 357 ~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d-~~t~~~l----------- 418 (784)
...|++++|...|++.. ..+...|..+...|.+.|++++|+..|++.... .| + ...+..+
T Consensus 48 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~ 125 (359)
T 3ieg_A 48 LAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRS 125 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHH
Confidence 66666666666666543 234456666667777777777777777776653 34 2 2222222
Q ss_pred -HHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCH
Q 044131 419 -LSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHG 494 (784)
Q Consensus 419 -l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 494 (784)
...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...|...|++
T Consensus 126 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 126 QALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 456778888888888888888765 5567788888999999999999999998765 34678899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHH------------HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCc-----chHHHHH
Q 044131 495 LEALQLFSEMLHSGIRPSG-VTFL------------SVLYACSHAGLVREGDEIFQSMIHDHGFKPLA-----EHYACMV 556 (784)
Q Consensus 495 ~~A~~~~~~m~~~g~~pd~-~t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~lv 556 (784)
++|+..|++..+. .|+. ..+. .+...+...|++++|...|+.+.+. .|+. ..+..+.
T Consensus 205 ~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la 279 (359)
T 3ieg_A 205 ELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERIC 279 (359)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHH
Confidence 9999999999874 3443 2222 3356688999999999999999865 3442 3355688
Q ss_pred HHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 044131 557 DILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSA 627 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 627 (784)
..+...|++++|.+.+++.- ..| ++.+|..+...+...|+++.|...++++++++|+++..+..|..++..
T Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 280 HCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 89999999999999998863 345 677999999999999999999999999999999999988888777654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-14 Score=167.49 Aligned_cols=551 Identities=13% Similarity=0.083 Sum_probs=371.6
Q ss_pred CCCChhhHhHHHHHhhCCCChhHHHHHhccCCC---------------CCcc---------h-------------HHHHH
Q 044131 37 FQNDLSTVTKLAHRLSDFKATCYARALFFSIPK---------------PDLF---------L-------------FNVII 79 (784)
Q Consensus 37 ~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~---------------~~~~---------~-------------~~~li 79 (784)
+..|+.+....|.+.++.|.+.+..++-.+-+. +|.. . ....|
T Consensus 721 ~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~i 800 (1630)
T 1xi4_A 721 FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYI 800 (1630)
T ss_pred ccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHH
Confidence 456888899999999999999988888765211 1110 0 11224
Q ss_pred HHHhcCCCchhHHHHHHHHHhhCCCCC-----------CcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHH
Q 044131 80 RGFSNNEMPKSSICFYTHLRKNTALTP-----------DNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAA 148 (784)
Q Consensus 80 ~~~~~~g~~~~a~~~~~~~m~~~~~~p-----------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~ 148 (784)
..|++.-++..+-. +...+.+..... +.....-|+..+-+.+++...+..++.-+..| ..|+.++|+
T Consensus 801 e~yv~~vnp~~~p~-Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hna 878 (1630)
T 1xi4_A 801 EIYVQKVNPSRLPV-VIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNA 878 (1630)
T ss_pred HHHHhccCCcccch-hhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHH
Confidence 44444333333322 222222211111 11113334444445555555666666666667 668899999
Q ss_pred HHHHhhcCCChHHHHHHhccC------------CCCCccc----------HHHHHHHHHcCCCchH-HHHHHHH------
Q 044131 149 LVDLYFKFSWVKSARKVFDKM------------PEKDTVL----------WNSMISGLMKNCCFQD-SIWVFGD------ 199 (784)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~~------------~~~~~~~----------~~~li~~~~~~g~~~~-A~~l~~~------ 199 (784)
|...|...+.-.+ +.+.+= .++|+.. -.-||...-+++.++. |.-+.++
T Consensus 879 lakiyid~n~npe--~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW 956 (1630)
T 1xi4_A 879 LAKIYIDSNNNPE--RFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELW 956 (1630)
T ss_pred HHHHHhccCCCHH--HHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHH
Confidence 9999986543222 111111 1223211 2234444444444432 2222211
Q ss_pred ---------HH--------HcC-CCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcC
Q 044131 200 ---------MV--------RNG-GTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLG--FHDHVYVLTGLVSFYSKCG 259 (784)
Q Consensus 200 ---------m~--------~~~-g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g 259 (784)
|+ ... .-.-|+.-.....+++...|...++.++++.++..+ +..+....+.|+.+..+.
T Consensus 957 ~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka- 1035 (1630)
T 1xi4_A 957 GSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA- 1035 (1630)
T ss_pred HHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-
Confidence 11 000 011223334567788888899999999999888432 123456677777777776
Q ss_pred ChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHH
Q 044131 260 EVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLK 339 (784)
Q Consensus 260 ~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 339 (784)
+..+...+.++...-+ ...+...+...|.+++|..+|++.. -.......++. ..++++.|.++...+
T Consensus 1036 D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv-- 1102 (1630)
T 1xi4_A 1036 DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC-- 1102 (1630)
T ss_pred ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc--
Confidence 5566666655554333 4557788889999999999999852 11111222222 567788888877654
Q ss_pred hCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044131 340 SGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSIL 419 (784)
Q Consensus 340 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 419 (784)
.+..+|..+..++.+.|++++|...|.+. .|...|.-++..+.+.|++++|++.|...++.. ++....+.+.
T Consensus 1103 ----n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~La 1174 (1630)
T 1xi4_A 1103 ----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 1174 (1630)
T ss_pred ----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHH
Confidence 45788999999999999999999999664 677788889999999999999999998877654 3333334588
Q ss_pred HHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044131 420 SACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQ 499 (784)
Q Consensus 420 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 499 (784)
.+|++.++++....+. + .++...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|++
T Consensus 1175 faYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred HHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHH
Confidence 8899998888544442 2 345556667999999999999999999985 489999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 044131 500 LFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVE 578 (784)
Q Consensus 500 ~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~ 578 (784)
.+++. .|..+|..+-.+|...|.+..|...... +..+.+.+..++..|.+.|.++||..+++.. .++
T Consensus 1243 aarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1243 GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred HHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 99976 4568899999999999999999887654 3346677889999999999999999999775 455
Q ss_pred CCH-HHHHHHHHHHHh--cCCHHHHHHHHHHHhcCCC-----CCcchHHHHHHHHHhcCChHHHHHH
Q 044131 579 PGP-AVWGALLGACMI--HKDTNLARVASEKLFELDP-----ENVGYHVLLSNIYSAERDYLQAATV 637 (784)
Q Consensus 579 p~~-~~~~~ll~a~~~--~g~~~~a~~~~~~~~~l~p-----~~~~~~~~l~~~y~~~g~~~~a~~~ 637 (784)
|.. ..|.-|..++.+ -+++.++.+.|..-..+.| ++...|.-+.-+|.+.|+|+.|...
T Consensus 1311 raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1311 RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 543 367666655555 4577788888888777777 7778899999999999999999853
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-17 Score=174.55 Aligned_cols=223 Identities=11% Similarity=0.073 Sum_probs=89.4
Q ss_pred hCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHH
Q 044131 52 SDFKATCYARALFFSIPKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLH 131 (784)
Q Consensus 52 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 131 (784)
-++|++++|...+++++.|+ +|..|..++.+.|++++|++ .|.+ .+|..+|..++.+|...|++++|...+
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAId-sfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAID-SYIK------ADDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHH-HHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 37899999999999998775 89999999999999999999 8864 378889999999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChh
Q 044131 132 GHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDST 211 (784)
Q Consensus 132 ~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~ 211 (784)
....+. .+++.+.+.|+.+|.|+|+++++.++|+. |+..+|+.+...|...|++++|...|..+ .
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~ 149 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------S 149 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT----------T
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------h
Confidence 888875 56688899999999999999999998864 77789999999999999999999999976 3
Q ss_pred hHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCC
Q 044131 212 SVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGK 291 (784)
Q Consensus 212 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~ 291 (784)
.|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY 222 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC
Confidence 6888888888888888888888776 377888888888888888888877776654 333334467788888888
Q ss_pred chHHHHHHHHHHHc
Q 044131 292 TESSLRLFRQLLAS 305 (784)
Q Consensus 292 ~~~A~~l~~~m~~~ 305 (784)
+++|+.+++..+..
T Consensus 223 ~eEai~lLe~aL~l 236 (449)
T 1b89_A 223 FEELITMLEAALGL 236 (449)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCC
Confidence 88888888887644
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-17 Score=174.18 Aligned_cols=323 Identities=14% Similarity=0.081 Sum_probs=161.4
Q ss_pred HhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHH
Q 044131 256 SKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHS 335 (784)
Q Consensus 256 ~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~ 335 (784)
-+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|+++++...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 37789999999999996664 9999999999999999999999763 688899999999999999999999888
Q ss_pred HHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH
Q 044131 336 FCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTV 415 (784)
Q Consensus 336 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 415 (784)
..++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 88874 55688999999999999999999988864 67789999999999999999999999977 368
Q ss_pred HHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHH
Q 044131 416 SSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGL 495 (784)
Q Consensus 416 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 495 (784)
..+..++.++|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 89999999999999999999988 378999999999999999999988877765 44444557999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC------CcchHHHHHHHHHhcCCHHH
Q 044131 496 EALQLFSEMLHSGIRPSGV--TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP------LAEHYACMVDILGRAGQLEK 567 (784)
Q Consensus 496 ~A~~~~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~lv~~l~r~g~~~e 567 (784)
+|+.+++...... +--.. |...++.+-.+.+++.+.++.|.+- -+++| +..+|.-++-+|...++++.
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999999987543 22233 4445555555567777777777643 36666 47899999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 568 ALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 568 A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
|...+-+-| |+..--..+.....+-.|.|.--++..-.++-.|.
T Consensus 301 A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~ 344 (449)
T 1b89_A 301 AIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL 344 (449)
T ss_dssp HHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHH
Confidence 998775543 33223334444555666666666665555554443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-16 Score=166.26 Aligned_cols=287 Identities=12% Similarity=0.044 Sum_probs=229.6
Q ss_pred CCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 044131 342 IVSNSSVLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSI 418 (784)
Q Consensus 342 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 418 (784)
.+.+..+...+...+...|++++|.++|+++.. .+...+..++..+.+.|++++|+.+|+++.... +.+...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 345566677777888888888888888887643 345567777888888899999999998888752 2345677777
Q ss_pred HHHHhhhC-chHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCH
Q 044131 419 LSACAQLG-AISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHG 494 (784)
Q Consensus 419 l~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 494 (784)
...+...| +++.|.+.+..+.+.. +.+...+..+...|...|++++|...|+++. ..+...|..+...|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 78888888 8888999988888764 4467788889999999999999999998875 33567788888999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC-------CCCcchHHHHHHHHHhcCCHHH
Q 044131 495 LEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGF-------KPLAEHYACMVDILGRAGQLEK 567 (784)
Q Consensus 495 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-------~p~~~~~~~lv~~l~r~g~~~e 567 (784)
++|++.|++..+.. +.+...+..+...+...|++++|..+|+...+...- ......+..+...|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998853 445677888888999999999999999988754211 2336788899999999999999
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHH-HhcCCh
Q 044131 568 ALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIY-SAERDY 631 (784)
Q Consensus 568 A~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y-~~~g~~ 631 (784)
|.+.+++.. ..| +..+|..+...+...|+++.|...++++++++|+++..+..++.+| ...|+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 999998762 333 5678999999999999999999999999999999999999999988 455554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-13 Score=157.42 Aligned_cols=471 Identities=13% Similarity=0.051 Sum_probs=311.7
Q ss_pred CCChhhHhHHHHHhhCCCChhHHHHHhccC------------CCCCcch----------HHHHHHHHhcCCCchhHHHHH
Q 044131 38 QNDLSTVTKLAHRLSDFKATCYARALFFSI------------PKPDLFL----------FNVIIRGFSNNEMPKSSICFY 95 (784)
Q Consensus 38 ~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~------------~~~~~~~----------~~~li~~~~~~g~~~~a~~~~ 95 (784)
..|..++|+|...|...++-. .+.+.+= .++|... -.-||...-+++.+...-+++
T Consensus 870 ~~~~~~hnalakiyid~n~np--e~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~aryl 947 (1630)
T 1xi4_A 870 CEEPATHNALAKIYIDSNNNP--ERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYL 947 (1630)
T ss_pred CCCHHHHHHHHHHHhccCCCH--HHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHH
Confidence 457889999999998765422 2322221 1122211 112344444444333322212
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCC--CCchhHHHHHHHHhhcCCChHHHHHHhccCCC-C
Q 044131 96 THLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGY--GSDLFVGAALVDLYFKFSWVKSARKVFDKMPE-K 172 (784)
Q Consensus 96 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~ 172 (784)
.++ -|...|+.+|.- +-+--+++.++.....+ ..|+.--...+..|...|...+|.+++++..- +
T Consensus 948 v~r-------~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~ 1015 (1630)
T 1xi4_A 948 VRR-------KDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDN 1015 (1630)
T ss_pred HHh-------cCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 221 345556665521 11223345555444432 22334446667778888888888888888762 2
Q ss_pred -----CcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhH
Q 044131 173 -----DTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYV 247 (784)
Q Consensus 173 -----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 247 (784)
+...-|.++.+..+. +..+..+...+... ....-+...|...|.+++|.++++..- .....
T Consensus 1016 s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--------~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A 1081 (1630)
T 1xi4_A 1016 SVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--------YDAPDIANIAISNELFEEAFAIFRKFD-----VNTSA 1081 (1630)
T ss_pred CcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--------ccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHH
Confidence 224456677666665 44555555544431 123346677778888888888888751 11111
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCCh
Q 044131 248 LTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHL 327 (784)
Q Consensus 248 ~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 327 (784)
.+.+ +-..|++++|.++.++... ..+|..+..++.+.|++++|++.|.+. -|...|..+..+|.+.|++
T Consensus 1082 ~~VL---ie~i~nldrAiE~Aervn~--p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGky 1150 (1630)
T 1xi4_A 1082 VQVL---IEHIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNW 1150 (1630)
T ss_pred HHHH---HHHHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCH
Confidence 2223 2277888888888887743 567888888999999999999988653 4667788888888899999
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 044131 328 HLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASK 407 (784)
Q Consensus 328 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 407 (784)
+++.+.+....+.. +++.+.+.++..|++.+++++..... ..++...|..+...|...|++++|..+|...
T Consensus 1151 EEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---- 1221 (1630)
T 1xi4_A 1151 EELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 1221 (1630)
T ss_pred HHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----
Confidence 99988888877765 44444556888888888888644442 4556667777888888889999999988874
Q ss_pred CCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q 044131 408 VAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISG 487 (784)
Q Consensus 408 ~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~ 487 (784)
..|..+...+.++|+++.|.+..+.+ .+..+|..+-.++...|++..|...... ...+...+..++.-
T Consensus 1222 -----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~y 1289 (1630)
T 1xi4_A 1222 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINY 1289 (1630)
T ss_pred -----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHH
Confidence 37888888888888888888888766 3557777777788888888888887765 33455566688888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC------CcchHHHHHHH
Q 044131 488 YGLHGHGLEALQLFSEMLHSGIRPSG---VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP------LAEHYACMVDI 558 (784)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~lv~~ 558 (784)
|...|.+++|+.+++..+.. .|.. .|...++.+-.+.+++.++.++|.+-. +++| +..+|.-++-+
T Consensus 1290 Ye~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f~~ri---ni~k~~r~~e~~~lW~elv~L 1364 (1630)
T 1xi4_A 1290 YQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSRV---NIPKVLRAAEQAHLWAELVFL 1364 (1630)
T ss_pred HHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---ccchHhHHHHHHHHHHHHHHH
Confidence 88999999999999877653 3332 334555566666777777777777543 5554 36778889999
Q ss_pred HHhcCCHHHHHHHHH
Q 044131 559 LGRAGQLEKALEFIK 573 (784)
Q Consensus 559 l~r~g~~~eA~~~~~ 573 (784)
|.+.|+++.|...+-
T Consensus 1365 Y~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1365 YDKYEEYDNAIITMM 1379 (1630)
T ss_pred HHhcccHHHHHHHHH
Confidence 999999998885543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-15 Score=166.91 Aligned_cols=127 Identities=10% Similarity=0.005 Sum_probs=72.5
Q ss_pred CcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHH
Q 044131 173 DTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLV 252 (784)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 252 (784)
|...|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+.+.|+.+++.+++.. |++..|..++
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 5667777777 46777888888888887743 22233355566666666666666666666666543 4555555555
Q ss_pred H-HHHhcCChHHHHH----HHhcCC------CCCeeeHHHHHHHHHh---------CCCchHHHHHHHHHHH
Q 044131 253 S-FYSKCGEVERAEL----LFRDIV------RPDLISCNAMISGYTC---------NGKTESSLRLFRQLLA 304 (784)
Q Consensus 253 ~-~y~~~g~~~~A~~----~f~~~~------~~d~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~ 304 (784)
. .+...|+.+.|++ +|++.. ..+...|...+....+ .|++++|..+|++.+.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 4 2234455555543 444331 1234455555554433 4556666666666554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.7e-15 Score=163.38 Aligned_cols=365 Identities=10% Similarity=0.013 Sum_probs=269.0
Q ss_pred chhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CCeeeHHHHHHHHHh----CCCchHHHHHHHHHHHcCCCCChhhH
Q 044131 244 HVYVLTGLVSFYSK----CGEVERAELLFRDIVR-PDLISCNAMISGYTC----NGKTESSLRLFRQLLASAERVNSSTI 314 (784)
Q Consensus 244 ~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~ 314 (784)
++.....|..+|.. .+++++|...|++..+ .+...+..|...|.. .+++++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44445555555555 5666666666655422 344455555556665 666666666666666554 33344
Q ss_pred HhHHHhhcC----CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHH
Q 044131 315 VGLIPVFYP----FGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSR----LNEMEAARKLFDESSE-KSLASWNAMIA 385 (784)
Q Consensus 315 ~~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~ 385 (784)
..+-..+.. .++.+.|...+....+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444444444 566777777777766654 45667777777876 7888999988887543 46778888888
Q ss_pred HHHh----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHH
Q 044131 386 GYTQ----NGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQ----LGAISLGKWVHELVKSRNFESNIYVSTALIDMY 457 (784)
Q Consensus 386 ~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 457 (784)
.|.+ .++.++|++.|++....| +...+..+...+.. .++.++|...+....+.+ +...+..|..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 8887 789999999999888764 55666666666665 778999999999888765 455677778888
Q ss_pred Hh----cCCHHHHHHHHhhcCC-CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044131 458 AK----CGNIVEARELFDLMSH-KSEVTWNTMISGYGLH-----GHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAG 527 (784)
Q Consensus 458 ~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 527 (784)
.. .++.++|...|++..+ .+..++..+...|... ++.++|+..|++..+.| +...+..+...+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 87 8999999999988764 4677888888888887 89999999999999875 4456666777777666
Q ss_pred ---CHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 044131 528 ---LVREGDEIFQSMIHDHGFKPLAEHYACMVDILGR----AGQLEKALEFIKGLAVEPGPAVWGALLGACMI----HKD 596 (784)
Q Consensus 528 ---~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~g~ 596 (784)
+.++|.++|+...+. .+...+..+..+|.. .+++++|.+++++..-..++..+..|...+.. .+|
T Consensus 343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence 789999999998753 357788888888888 89999999999887434467788889888887 899
Q ss_pred HHHHHHHHHHHhcCCCC---CcchHHHHHHHHHh
Q 044131 597 TNLARVASEKLFELDPE---NVGYHVLLSNIYSA 627 (784)
Q Consensus 597 ~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~~ 627 (784)
.++|...++++.+.+|+ ++.....|+.++..
T Consensus 419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999999999854 67777777766554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.4e-16 Score=161.04 Aligned_cols=263 Identities=11% Similarity=0.030 Sum_probs=227.2
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHH
Q 044131 375 KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALI 454 (784)
Q Consensus 375 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li 454 (784)
.+...+..+...+...|++++|+++|+++.... +.+...+..+...+...|++++|..++..+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 355677788888999999999999999998753 3344566667788899999999999999999875 55788899999
Q ss_pred HHHHhcC-CHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 044131 455 DMYAKCG-NIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVR 530 (784)
Q Consensus 455 ~~y~k~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 530 (784)
..|...| ++++|...|++..+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998763 467799999999999999999999999999853 334567777889999999999
Q ss_pred HHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-C----------CCCHHHHHHHHHHHHhcCCHH
Q 044131 531 EGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-V----------EPGPAVWGALLGACMIHKDTN 598 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~----------~p~~~~~~~ll~a~~~~g~~~ 598 (784)
+|.++|+...+ +.|+ ...+..+...+.+.|++++|.+.+++.. . +.+..+|..+..++...|+++
T Consensus 177 ~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999874 3454 6788999999999999999999997752 1 334679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 599 LARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 599 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.|...+++++++.|+++..+..++.+|...|++++|.+.++...+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999886543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-14 Score=160.81 Aligned_cols=392 Identities=10% Similarity=0.022 Sum_probs=245.2
Q ss_pred hhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCeeeHHHHHH-HH
Q 044131 210 STSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR--PDLISCNAMIS-GY 286 (784)
Q Consensus 210 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~d~~~~~~li~-~~ 286 (784)
...|..++.. ...|+++.++.+++.+++. .+.+...|..++..+.+.|++++|+.+|++... |++..|...+. ..
T Consensus 13 ~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 13 LDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR 90 (530)
T ss_dssp HHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 3455555553 4556666666666666653 233555666666666666666666666666543 44444554443 22
Q ss_pred HhCCCchHHHH----HHHHHHHc-CCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHh---
Q 044131 287 TCNGKTESSLR----LFRQLLAS-AERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSR--- 358 (784)
Q Consensus 287 ~~~g~~~~A~~----l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~--- 358 (784)
...|+.++|.+ +|++.+.. |..|+ +..+|...+....+
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~----------------------------------~~~~w~~~~~~~~~~~~ 136 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIM----------------------------------SYQIWVDYINFLKGVEA 136 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTT----------------------------------CHHHHHHHHHHHHHSCC
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcc----------------------------------cHHHHHHHHHHHhcCCC
Confidence 23455555544 44433322 33322 23334444333332
Q ss_pred ------cCCHHHHHHHHhhcCC-CC---hhHHHHHHHHH-------------HhCCChhHHHHHHHHHH------hCC--
Q 044131 359 ------LNEMEAARKLFDESSE-KS---LASWNAMIAGY-------------TQNGLTEEAISLFQEMQ------ASK-- 407 (784)
Q Consensus 359 ------~g~~~~A~~~f~~~~~-~~---~~~~~~li~~~-------------~~~g~~~~A~~l~~~m~------~~g-- 407 (784)
.|+++.|+++|++... |. ...|....... .+.+++.+|..++.++. ...
T Consensus 137 ~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~ 216 (530)
T 2ooe_A 137 VGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAP 216 (530)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSC
T ss_pred cccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4555555555555332 11 11222211100 12345666766666532 111
Q ss_pred -CCCCH--------HHHHHHHHHHhh----hCch----HHHHHHHHHHHHcCCCCchhhHhHHHHHHHh-------cCCH
Q 044131 408 -VAPNP--------VTVSSILSACAQ----LGAI----SLGKWVHELVKSRNFESNIYVSTALIDMYAK-------CGNI 463 (784)
Q Consensus 408 -~~pd~--------~t~~~ll~a~~~----~~~~----~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k-------~g~~ 463 (784)
+.|+. ..|...+..... .++. +.+..+++.+++.. +.+..+|..++..+.+ .|++
T Consensus 217 ~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~ 295 (530)
T 2ooe_A 217 SVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDM 295 (530)
T ss_dssp CCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccch
Confidence 24431 233333322221 1122 35667788887763 5567888888888775 6888
Q ss_pred H-------HHHHHHhhcCC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHH
Q 044131 464 V-------EARELFDLMSH---K-SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSG--VTFLSVLYACSHAGLVR 530 (784)
Q Consensus 464 ~-------~A~~~f~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~ 530 (784)
+ +|+.+|++..+ | +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|...+..+.+.|+++
T Consensus 296 ~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 296 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHH
Confidence 7 89999988753 3 577999999999999999999999999998 45653 46888888888899999
Q ss_pred HHHHHHHHhHHhcCCCCC-cchHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044131 531 EGDEIFQSMIHDHGFKPL-AEHYACMVDI-LGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEK 606 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~-~~~~~~lv~~-l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~ 606 (784)
+|.++|+...+ ..|. ...|...+.+ +...|+.++|..++++. ...| ++.+|..++......|+.+.|..++++
T Consensus 374 ~A~~~~~~Al~---~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 374 SGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHHHT---CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHh---ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 99999998874 3444 2333322222 33689999999999865 2334 577999999999999999999999999
Q ss_pred HhcCCCCCcc----hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 607 LFELDPENVG----YHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 607 ~~~l~p~~~~----~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+++..|.++. .+..........|+.+.+.++.+.+.+
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9998777665 666677788888999999998887765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.4e-16 Score=165.34 Aligned_cols=279 Identities=11% Similarity=-0.015 Sum_probs=218.2
Q ss_pred HHhcCCHHHHHH-HHhhcCC---C----ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCc
Q 044131 356 YSRLNEMEAARK-LFDESSE---K----SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGA 427 (784)
Q Consensus 356 y~~~g~~~~A~~-~f~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 427 (784)
|.-.|++++|.. .|++... . +...|..+...|.+.|++++|+..|+++.... +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344577888887 7774332 1 34568888888999999999999999988763 3466778888888889999
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHH---------------HHHHHH
Q 044131 428 ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH--K-SEVTWNT---------------MISGYG 489 (784)
Q Consensus 428 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~---------------li~~~~ 489 (784)
++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.. | +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999888775 55778888889999999999999999887652 2 2222221 133344
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHH
Q 044131 490 LHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEK 567 (784)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~e 567 (784)
..|++++|+..|+++.+..... +..++..+...+...|++++|..+|+.+.+. .|+ ...|..+...+.+.|++++
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHH
Confidence 8899999999999999853211 4788899999999999999999999998854 454 6789999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-----------cchHHHHHHHHHhcCChHHH
Q 044131 568 ALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPEN-----------VGYHVLLSNIYSAERDYLQA 634 (784)
Q Consensus 568 A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~-----------~~~~~~l~~~y~~~g~~~~a 634 (784)
|.+.++++ ...| +..+|..+..++...|+++.|...+++++++.|++ +..+..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999886 2344 57799999999999999999999999999999887 78899999999999999999
Q ss_pred HHHHH
Q 044131 635 ATVRQ 639 (784)
Q Consensus 635 ~~~~~ 639 (784)
..+++
T Consensus 350 ~~~~~ 354 (368)
T 1fch_A 350 GAADA 354 (368)
T ss_dssp HHHHT
T ss_pred HHhHH
Confidence 98875
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-13 Score=150.82 Aligned_cols=351 Identities=15% Similarity=0.065 Sum_probs=293.2
Q ss_pred CCeeeHHHHHHHHHh----CCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcC----CCChhHHHHHHHHHHHhCCCcc
Q 044131 274 PDLISCNAMISGYTC----NGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYP----FGHLHLTNCIHSFCLKSGIVSN 345 (784)
Q Consensus 274 ~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~~ 345 (784)
.|..++..+-..|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+.|...+....+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 455666677777777 899999999999998874 45566666666666 889999999999998876 5
Q ss_pred hHHHHHHHHHHHh----cCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHHHH
Q 044131 346 SSVLTALSTVYSR----LNEMEAARKLFDESSEK-SLASWNAMIAGYTQ----NGLTEEAISLFQEMQASKVAPNPVTVS 416 (784)
Q Consensus 346 ~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~ 416 (784)
...+..|..+|.. .+++++|.+.|++..+. +..++..|...|.. .++.++|++.|++....| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6777889999988 88999999999986544 66788888888887 789999999999998875 667777
Q ss_pred HHHHHHhh----hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHh----cCCHHHHHHHHhhcC-CCCHHHHHHHHHH
Q 044131 417 SILSACAQ----LGAISLGKWVHELVKSRNFESNIYVSTALIDMYAK----CGNIVEARELFDLMS-HKSEVTWNTMISG 487 (784)
Q Consensus 417 ~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~-~~~~~~~~~li~~ 487 (784)
.+-..+.. .++.++|...+....+.+ +......|..+|.. .+++++|...|++.. ..+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777 789999999999999876 56678888888987 899999999999876 4567788888888
Q ss_pred HHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHhHHhcCCCCCcchHHHHHHH
Q 044131 488 YGL----HGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHA-----GLVREGDEIFQSMIHDHGFKPLAEHYACMVDI 558 (784)
Q Consensus 488 ~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~ 558 (784)
|.. .++.++|++.|++..+.| +...+..+...+... ++.++|..+|+...+. -+...+..+..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHH
Confidence 888 899999999999998765 455666777777776 8999999999998753 245677788888
Q ss_pred HHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----
Q 044131 559 LGRAG---QLEKALEFIKGLAVEPGPAVWGALLGACMI----HKDTNLARVASEKLFELDPENVGYHVLLSNIYSA---- 627 (784)
Q Consensus 559 l~r~g---~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~---- 627 (784)
|.+.| ++++|.+++++..-..++..+..|...+.. .+|.++|...++++.+.+ ++..+..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 87767 889999999887434678899999999988 899999999999998864 57799999999999
Q ss_pred cCChHHHHHHHHHHHhCC
Q 044131 628 ERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 628 ~g~~~~a~~~~~~m~~~~ 645 (784)
.++.++|.+.++...+.+
T Consensus 416 ~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 899999999999887755
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.9e-14 Score=143.67 Aligned_cols=245 Identities=10% Similarity=-0.051 Sum_probs=154.1
Q ss_pred HHhcCCHHHHHHHHhhcCCCCh----hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHH
Q 044131 356 YSRLNEMEAARKLFDESSEKSL----ASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLG 431 (784)
Q Consensus 356 y~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 431 (784)
....|++..|...++.....+. ...-.+..+|...|++++|+..++. .-.|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3456888888888877665443 2345567788888888888876644 1345666777777777777778888
Q ss_pred HHHHHHHHHcCC-CCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 044131 432 KWVHELVKSRNF-ESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIR 510 (784)
Q Consensus 432 ~~i~~~~~~~g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 510 (784)
.+.++.+...+. +.+..++..+...|...|++++|.+.|++ ..+...+..++..|.+.|+.++|++.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 888887776654 33556666777788888888888888887 456777777888888888888888888888774 3
Q ss_pred CCHHHH---HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 044131 511 PSGVTF---LSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGAL 587 (784)
Q Consensus 511 pd~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~l 587 (784)
|+.... .+.+..+...|++++|..+|+++.+. .++++.+|+.+
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----------------------------------~p~~~~~~~~l 206 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK----------------------------------CSPTLLLLNGQ 206 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----------------------------------SCCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh----------------------------------CCCcHHHHHHH
Confidence 554211 11122223345566666666665543 12344455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH-HHHHHHHHH
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQ-AATVRQVVK 642 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~-a~~~~~~m~ 642 (784)
..++...|++++|+..++++++++|+++..+..++.++...|++++ +.++++.+.
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555544 234444443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-15 Score=160.65 Aligned_cols=259 Identities=10% Similarity=-0.062 Sum_probs=210.6
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHH
Q 044131 376 SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALID 455 (784)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 455 (784)
+...|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|...+..+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888899999999999999999988753 3467788888889999999999999999998875 556788899999
Q ss_pred HHHhcCCHHHHHHHHhhcCC--CC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 044131 456 MYAKCGNIVEARELFDLMSH--KS-----------EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIR-PSGVTFLSVLY 521 (784)
Q Consensus 456 ~y~k~g~~~~A~~~f~~~~~--~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~ll~ 521 (784)
.|.+.|++++|...|+++.+ |+ ...+..+...|...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999988763 21 223445578889999999999999999985321 15788999999
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 044131 522 ACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTN 598 (784)
Q Consensus 522 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~ 598 (784)
.+...|++++|.++|+...+. .| +...|..+..+|.+.|++++|.+.++++ ...| +..+|..+..++...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999854 34 4778999999999999999999999886 3445 4779999999999999999
Q ss_pred HHHHHHHHHhcCCCC------------CcchHHHHHHHHHhcCChHHHHHHHH
Q 044131 599 LARVASEKLFELDPE------------NVGYHVLLSNIYSAERDYLQAATVRQ 639 (784)
Q Consensus 599 ~a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~ 639 (784)
+|...+++++++.|+ +...+..|+.+|...|+.+.+.++.+
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999998887 36678999999999999999887754
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.67 E-value=7.7e-15 Score=156.88 Aligned_cols=281 Identities=11% Similarity=0.035 Sum_probs=154.4
Q ss_pred HhcCChHHHHH-HHhcCCC-------CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCCh
Q 044131 256 SKCGEVERAEL-LFRDIVR-------PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHL 327 (784)
Q Consensus 256 ~~~g~~~~A~~-~f~~~~~-------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 327 (784)
.-.|++++|.. .|++... .+...|..+...+.+.|++++|+..|+++.+..
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------------------- 94 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--------------------- 94 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC---------------------
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------
Confidence 33467778877 7775422 245678888888888888888888888887652
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 044131 328 HLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESS---EKSLASWNAMIAGYTQNGLTEEAISLFQEMQ 404 (784)
Q Consensus 328 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 404 (784)
+.+..++..+...|.+.|++++|.+.|++.. ..+..+|..+...|...|++++|++.|+++.
T Consensus 95 ---------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 95 ---------------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp ---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2344556667777777777777777777543 3466778888888888888888888888887
Q ss_pred hCCCCCCHHH-HHH---------------HHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHH
Q 044131 405 ASKVAPNPVT-VSS---------------ILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARE 468 (784)
Q Consensus 405 ~~g~~pd~~t-~~~---------------ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 468 (784)
... |+... +.. .+..+...|++++|...+..+.+..-..
T Consensus 160 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~----------------------- 214 (368)
T 1fch_A 160 RYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS----------------------- 214 (368)
T ss_dssp HTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS-----------------------
T ss_pred HhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCc-----------------------
Confidence 753 32211 110 1122224444444444444444332110
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC
Q 044131 469 LFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL 548 (784)
Q Consensus 469 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 548 (784)
++..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|..+|+.+.+. .|+
T Consensus 215 -------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~ 283 (368)
T 1fch_A 215 -------IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPG 283 (368)
T ss_dssp -------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT
T ss_pred -------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence 024455555555555555555555555555431 223344555555555555555555555555432 222
Q ss_pred -cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 549 -AEHYACMVDILGRAGQLEKALEFIKGLA-VEP------------GPAVWGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 549 -~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p------------~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
...+..+..+|.+.|++++|.+.++++- ..| ...+|..+..++...|+.+.|..++++.+
T Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 4445555555555555555555554431 111 14566666666666677666666655443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-15 Score=161.61 Aligned_cols=230 Identities=11% Similarity=0.039 Sum_probs=194.9
Q ss_pred CHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHH
Q 044131 411 NPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISG 487 (784)
Q Consensus 411 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~ 487 (784)
+...+......+...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|+++. ..+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788889999999999999999999875 5678899999999999999999999999876 3568899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHH
Q 044131 488 YGLHGHGLEALQLFSEMLHSGIRPSGV-----------TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMV 556 (784)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~pd~~-----------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv 556 (784)
|...|++++|+..|+++.+. .|+.. .+..+...+...|++++|.++|+.+.+...-.++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999884 34422 233457789999999999999999986533323578899999
Q ss_pred HHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 044131 557 DILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQA 634 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 634 (784)
..|.+.|++++|.+.+++.. ..| +..+|..+..++...|+++.|...++++++++|+++..+..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998863 344 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 044131 635 ATVRQVVKK 643 (784)
Q Consensus 635 ~~~~~~m~~ 643 (784)
.+.++...+
T Consensus 301 ~~~~~~al~ 309 (365)
T 4eqf_A 301 VSNFLTALS 309 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.2e-14 Score=155.49 Aligned_cols=369 Identities=10% Similarity=-0.034 Sum_probs=222.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC-----------C-CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCh
Q 044131 244 HVYVLTGLVSFYSKCGEVERAELLFRDIV-----------R-PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNS 311 (784)
Q Consensus 244 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~-----------~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 311 (784)
....||.|...|...|+.++|.+.|++.. . ...++|+.+...|...|++++|+..|++.......
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~--- 126 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK--- 126 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh---
Confidence 35567888888888888888887776531 1 23456777777777777777777777765432000
Q ss_pred hhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHh--cCCHHHHHHHHhhcC---CCChhHHHHHHHH
Q 044131 312 STIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSR--LNEMEAARKLFDESS---EKSLASWNAMIAG 386 (784)
Q Consensus 312 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~--~g~~~~A~~~f~~~~---~~~~~~~~~li~~ 386 (784)
.... .-.....++..+..++.+ .+++++|...|++.. ..+...+..+...
T Consensus 127 ---------~~~~----------------~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~ 181 (472)
T 4g1t_A 127 ---------FSSP----------------YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIA 181 (472)
T ss_dssp ---------SCCS----------------SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred ---------cccc----------------cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 0000 001112333333333333 345778888877643 2344555555444
Q ss_pred ---HHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHh
Q 044131 387 ---YTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQ----LGAISLGKWVHELVKSRNFESNIYVSTALIDMYAK 459 (784)
Q Consensus 387 ---~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 459 (784)
+...++.++|++.|++..... +.+...+..+...+.. .++.+.|.+.+..+.+.. +.+..++..+...|.+
T Consensus 182 ~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 182 SYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 344577788888888776642 2244445444444433 456778888888877765 5567777888888888
Q ss_pred cCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHH-------------------cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 044131 460 CGNIVEARELFDLMS---HKSEVTWNTMISGYGL-------------------HGHGLEALQLFSEMLHSGIRPSGVTFL 517 (784)
Q Consensus 460 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~pd~~t~~ 517 (784)
.|++++|...|++.. ..+..+|..+...|.. .+..++|+..|++..+.. +.+..++.
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 338 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCS 338 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhh
Confidence 888888888888765 2345566666655532 233567888888887743 33445677
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcc----hHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 044131 518 SVLYACSHAGLVREGDEIFQSMIHDHGFKPLAE----HYACMVD-ILGRAGQLEKALEFIKGL-AVEPGPAVWGALLGAC 591 (784)
Q Consensus 518 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~lv~-~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~ 591 (784)
.+...+...|++++|.++|++..+. .|+.. .+..+.. .+...|+.++|++.+++. .+.|+...+...+
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~--- 412 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK--- 412 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH---
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH---
Confidence 8888999999999999999988743 34322 2233333 234778999999998775 4677655443333
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEE
Q 044131 592 MIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLI 655 (784)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i 655 (784)
+.++.++++.++.+|+++..|..|+.+|...|++++|.+.+++..+.+-.-....+|+
T Consensus 413 ------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 413 ------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 4456778888999999999999999999999999999999988777665444455554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=7.3e-15 Score=153.95 Aligned_cols=253 Identities=10% Similarity=-0.039 Sum_probs=168.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhc
Q 044131 381 NAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKC 460 (784)
Q Consensus 381 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~ 460 (784)
..+...+.+.|++++|+.+|+++.... +.+...+..+..++...|+++.|...+..+.+.. +.+..++..+...|.+.
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 333344444444444444444443321 1133333344444444444444444444444432 22344444444555555
Q ss_pred CCHHHHHHHHhhcCC--C-CHHHHHH-------------H-HH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044131 461 GNIVEARELFDLMSH--K-SEVTWNT-------------M-IS-GYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYA 522 (784)
Q Consensus 461 g~~~~A~~~f~~~~~--~-~~~~~~~-------------l-i~-~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 522 (784)
|++++|...|+++.+ | +...+.. + .. .+...|++++|++.|+++.+.. +.+..++..+...
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 181 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVL 181 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 555555555544331 1 1111111 1 12 2667788899999999988753 3467788888889
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNL 599 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~ 599 (784)
+...|++++|.++|+.+.+. .| +...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|+++.
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 99999999999999988754 34 3678888999999999999999999876 2334 57789999999999999999
Q ss_pred HHHHHHHHhcCCCC------------CcchHHHHHHHHHhcCChHHHHHHHH
Q 044131 600 ARVASEKLFELDPE------------NVGYHVLLSNIYSAERDYLQAATVRQ 639 (784)
Q Consensus 600 a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~ 639 (784)
|...+++++++.|+ ++..+..++.+|...|++++|..+++
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999 78899999999999999999998875
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-16 Score=178.54 Aligned_cols=131 Identities=14% Similarity=0.143 Sum_probs=111.6
Q ss_pred CCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044131 443 FESNIYVSTALIDMYAKCGNIVEARELFDLMS-------HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVT 515 (784)
Q Consensus 443 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 515 (784)
...-..+||+||++|+|+|++++|.++|++|. .||++|||+||.||++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997653 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCC-HHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 044131 516 FLSVLYACSHAGL-VREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKG 574 (784)
Q Consensus 516 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~ 574 (784)
|+++|.++++.|. .++|.++|++|.++ |+.||..+|+|++....|.+-++...++...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~ 261 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcc
Confidence 9999999999987 57889999999765 9999999999998877777655555544333
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-13 Score=143.54 Aligned_cols=226 Identities=12% Similarity=0.034 Sum_probs=122.5
Q ss_pred CeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHH
Q 044131 275 DLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALST 354 (784)
Q Consensus 275 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 354 (784)
+...|..+...+...|++++|+.+|+++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~ 63 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA------------------------------------PEREEAWRSLGL 63 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------------------------------------CCCHHHHHHHHH
Confidence 44556677777788888888888888776542 223445555666
Q ss_pred HHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH------------
Q 044131 355 VYSRLNEMEAARKLFDESS---EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSIL------------ 419 (784)
Q Consensus 355 ~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll------------ 419 (784)
.|.+.|++++|...|++.. ..+...|..+...|...|++++|++.|+++.... |+.......+
T Consensus 64 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 141 (327)
T 3cv0_A 64 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNV 141 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC----------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHH
Confidence 6667777777777776543 2355677777777778888888888887777642 3221111111
Q ss_pred --HH--HhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcC
Q 044131 420 --SA--CAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHG 492 (784)
Q Consensus 420 --~a--~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g 492 (784)
.. +...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++. ..+..+|..+...|...|
T Consensus 142 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 142 QSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp ----CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 21 445555555555555555443 2234444555555555555555555554433 123444444555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 044131 493 HGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMI 540 (784)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 540 (784)
++++|+..|+++.+.. +.+..++..+...+...|++++|.++|+...
T Consensus 221 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 221 RPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5555555555444421 1223344444444444444444444444443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.8e-16 Score=174.48 Aligned_cols=159 Identities=11% Similarity=0.111 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHH
Q 044131 378 ASWNAMIAGYTQNGLTEEAISLFQEMQA---SKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALI 454 (784)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li 454 (784)
++||+||.+|++.|+.++|.++|.+|.+ .|+.||.+||+++|.++++.|.+++|.++++.|.+.|+.|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P--------- 198 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP--------- 198 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC---------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---------
Confidence 4778888888888888888888777653 3566666666666666666666666666666666666554
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 044131 455 DMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGH-GLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGD 533 (784)
Q Consensus 455 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 533 (784)
|++|||+||.++++.|+ .++|.++|++|.+.|+.||.+||+++++++.+.+.++...
T Consensus 199 ----------------------DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vr 256 (1134)
T 3spa_A 199 ----------------------DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH 256 (1134)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHG
T ss_pred ----------------------cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHH
Confidence 56666666667777776 4688899999999999999999999998877765544444
Q ss_pred HHHHHhHHhcCCCCC------cchHHHHHHHHHhcC---------CHHHHHHHHH
Q 044131 534 EIFQSMIHDHGFKPL------AEHYACMVDILGRAG---------QLEKALEFIK 573 (784)
Q Consensus 534 ~~~~~m~~~~~~~p~------~~~~~~lv~~l~r~g---------~~~eA~~~~~ 573 (784)
++ .. ++.|+ ..+...|.+.|.+.+ .+++-.++|+
T Consensus 257 kv----~P--~f~p~~~~~~~~~t~~LL~dl~s~d~~~s~pk~~~~~~~L~~~~~ 305 (1134)
T 3spa_A 257 KV----KP--TFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305 (1134)
T ss_dssp GG----CC--CCCCCCCCCCCCCCCTTTHHHHCCCSCCCCCCCSSCHHHHHHHHH
T ss_pred Hh----Cc--ccCCCCCCcccccchHHHHHHHccCCCCcCccccCCHHHHHHHHH
Confidence 33 22 33333 455666888888776 2455555554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-13 Score=139.88 Aligned_cols=224 Identities=11% Similarity=0.069 Sum_probs=149.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChh
Q 044131 249 TGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLH 328 (784)
Q Consensus 249 ~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 328 (784)
..+..+|...|+++.|...++....|+..++..+...+...|+.++|++.++++...+..|+
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~------------------ 99 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT------------------ 99 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS------------------
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCC------------------
Confidence 34556677777777777666655445555666666667777777777777777665543333
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 044131 329 LTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKV 408 (784)
Q Consensus 329 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 408 (784)
+..++..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++...
T Consensus 100 ----------------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 100 ----------------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ----------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 344556677888899999999999998 567788999999999999999999999999875
Q ss_pred CCCHHHHHHHH----HHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHH
Q 044131 409 APNPVTVSSIL----SACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTW 481 (784)
Q Consensus 409 ~pd~~t~~~ll----~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~ 481 (784)
.|+.. ...+. ..+...|++++|..+++.+.+. .+.+..+++.+...|.+.|++++|...|++.. ..+..+|
T Consensus 160 ~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 35532 22222 2223346777777777777765 24566666666666666666666666666644 2355566
Q ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHCCCCCCHH
Q 044131 482 NTMISGYGLHGHGLE-ALQLFSEMLHSGIRPSGV 514 (784)
Q Consensus 482 ~~li~~~~~~g~~~~-A~~~~~~m~~~g~~pd~~ 514 (784)
..++..+...|+.++ +.++++++.+ +.|+..
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~ 269 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP 269 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence 666666666666654 4566666665 345443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-13 Score=151.06 Aligned_cols=381 Identities=11% Similarity=-0.011 Sum_probs=227.5
Q ss_pred ChhhHHhHHHHHhcccchhHHHHHHHHHHHh-----C--CCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC-------
Q 044131 209 DSTSVAAVLPAVAEVQELRLGMEIQCLGLKL-----G--FHD-HVYVLTGLVSFYSKCGEVERAELLFRDIVR------- 273 (784)
Q Consensus 209 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g--~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------- 273 (784)
....|+.+-..+...|+.++|.+.+...++. + ..| ...+|+.+...|...|++++|...|++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456888888889999999999999988763 1 122 356788999999999999999998876521
Q ss_pred C----CeeeHHHHHHHHHh--CCCchHHHHHHHHHHHcCCCCChh-hHHhHHHh---hcCCCChhHHHHHHHHHHHhCCC
Q 044131 274 P----DLISCNAMISGYTC--NGKTESSLRLFRQLLASAERVNSS-TIVGLIPV---FYPFGHLHLTNCIHSFCLKSGIV 343 (784)
Q Consensus 274 ~----d~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~---~~~~~~~~~a~~i~~~~~~~g~~ 343 (784)
+ ...+++.+..++.. .+++++|++.|++.++. .|+.. .+..+..+ ....++.+.+.+.+...++.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 12345544445544 45789999999998875 35433 33333222 345677778888888887765 3
Q ss_pred cchHHHHHHHHHHHh----cCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHH
Q 044131 344 SNSSVLTALSTVYSR----LNEMEAARKLFDESS---EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN-PVTV 415 (784)
Q Consensus 344 ~~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~ 415 (784)
.+..++..+...+.. .|+.++|.+.+++.. ..+...|+.+...|.+.|++++|+..|.+.... .|+ ..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHH
Confidence 445555555544443 466778888887643 446678888888899999999999999888764 444 3444
Q ss_pred HHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcC
Q 044131 416 SSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHG 492 (784)
Q Consensus 416 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g 492 (784)
..+...+...+.... ... ...........+..+.|...|+... ..+..+|..+...|...|
T Consensus 285 ~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 444333322111000 000 0001111112234567777777654 345567888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 044131 493 HGLEALQLFSEMLHSGIRPSGV--TFLSVLY-ACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKAL 569 (784)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~ 569 (784)
++++|++.|++..+....|... .+..+.. ...+.|+.++|.+.|++.. .+.|+....... ++.+.
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~---------~~~l~ 416 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKM---------KDKLQ 416 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHH---------HHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHH---------HHHHH
Confidence 9999999999998864333321 2222222 3457899999999999887 456664332222 23333
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHH
Q 044131 570 EFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLS 622 (784)
Q Consensus 570 ~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 622 (784)
+++++. ...| ++.+|..|..++...|+.++|...++++++++|.+|.++.-++
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 444332 2233 5668999999999999999999999999999999888766554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-13 Score=134.67 Aligned_cols=194 Identities=14% Similarity=0.030 Sum_probs=155.2
Q ss_pred CCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044131 444 ESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVL 520 (784)
Q Consensus 444 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 520 (784)
+++...+..+...|.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45677788888899999999999999987653 467789999999999999999999999998853 33456788888
Q ss_pred HHHHcc-----------CCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHH
Q 044131 521 YACSHA-----------GLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VEPGPAVWGAL 587 (784)
Q Consensus 521 ~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~l 587 (784)
.++... |++++|...|+...+. .|+ ...+..+..+|...|++++|++.+++.- ...++..|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 9999999999998853 565 6788889999999999999999998762 22778899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
..++...|++++|...++++++++|+++..+..++.+|...|++++|.+.++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.2e-13 Score=134.42 Aligned_cols=216 Identities=11% Similarity=0.011 Sum_probs=153.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHH
Q 044131 379 SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYA 458 (784)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 458 (784)
.|..+...+...|++++|+..|++..... .+... +..+...|.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~-----------------------------------~~~~~~~~~ 49 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITY-----------------------------------LNNRAAAEY 49 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHH-----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHH-----------------------------------HHHHHHHHH
Confidence 45555555666666666666666555543 34444 444444555
Q ss_pred hcCCHHHHHHHHhhcCC--C----C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044131 459 KCGNIVEARELFDLMSH--K----S----EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGL 528 (784)
Q Consensus 459 k~g~~~~A~~~f~~~~~--~----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 528 (784)
..|++++|...|++..+ | + ...|..+...|...|++++|+..|++..+ +.|+.. .+...|+
T Consensus 50 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~ 120 (258)
T 3uq3_A 50 EKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRN 120 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhH
Confidence 55555555555544431 1 1 45677777778888888888888888777 345532 3455677
Q ss_pred HHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044131 529 VREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-V-EPGPAVWGALLGACMIHKDTNLARVASE 605 (784)
Q Consensus 529 ~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 605 (784)
+++|...++.+.+ ..|+ ...+..+...+.+.|++++|.+.+++.- . +.+..+|..+...+...|+++.|...++
T Consensus 121 ~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 121 AEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888888888764 3443 5677788888888888888888887762 2 3457788899999999999999999999
Q ss_pred HHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 606 KLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 606 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-12 Score=132.36 Aligned_cols=240 Identities=13% Similarity=-0.048 Sum_probs=183.7
Q ss_pred CCChhHHHHHHHHHHhCCCC--C-CHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHH
Q 044131 390 NGLTEEAISLFQEMQASKVA--P-NPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEA 466 (784)
Q Consensus 390 ~g~~~~A~~l~~~m~~~g~~--p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A 466 (784)
.|++++|+..|+++...... | +..++..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677788888777765321 1 34566667777777888888888888877764 44677888888889999999999
Q ss_pred HHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 044131 467 RELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDH 543 (784)
Q Consensus 467 ~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 543 (784)
...|++.. ..+...|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|..+++......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 99988776 346789999999999999999999999999984 5666555556666677899999999998887542
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcch
Q 044131 544 GFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-VEPG-----PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGY 617 (784)
Q Consensus 544 ~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~ 617 (784)
+++... ..++..+...++.++|.+.+++.- ..|+ ..+|..+...+...|+++.|...++++++++|++...
T Consensus 175 --~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 175 --DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp --CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred --CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 333334 447778888889999999998763 3332 5688999999999999999999999999999987544
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 044131 618 HVLLSNIYSAERDYLQAATVR 638 (784)
Q Consensus 618 ~~~l~~~y~~~g~~~~a~~~~ 638 (784)
+ +.++...|++++|.+-+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 4 66788888888887654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-12 Score=131.78 Aligned_cols=235 Identities=12% Similarity=0.033 Sum_probs=156.5
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCC--CCCC----HHHHH
Q 044131 345 NSSVLTALSTVYSRLNEMEAARKLFDESSE--KSLASWNAMIAGYTQNGLTEEAISLFQEMQASK--VAPN----PVTVS 416 (784)
Q Consensus 345 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd----~~t~~ 416 (784)
....+..+...|...|++++|...|++... .+...|..+...|...|++++|++.|++..... ..|+ ..++.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 356788899999999999999999986432 677899999999999999999999999987632 1112 24444
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHH
Q 044131 417 SILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLE 496 (784)
Q Consensus 417 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 496 (784)
.+...+...|++++|...+..+.+.. ++. ..+...|++++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~---------------------------------~~~-------~~~~~~~~~~~ 123 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH---------------------------------RTA-------DILTKLRNAEK 123 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------CCH-------HHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC---------------------------------chh-------HHHHHHhHHHH
Confidence 55555555555555555555555432 221 22344455666
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 044131 497 ALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL 575 (784)
Q Consensus 497 A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m 575 (784)
|+..++++... .| +...+..+...+...|++++|...|+...+.. +.+...|..+...|.+.|++++|.+.+++.
T Consensus 124 a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 124 ELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666666553 23 23345555566666666666666666665431 123556666677777777777777776655
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC------CCCcchHHHHHH
Q 044131 576 -AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELD------PENVGYHVLLSN 623 (784)
Q Consensus 576 -~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~------p~~~~~~~~l~~ 623 (784)
...| +..+|..+..++...|+.+.|...++++++++ |++...+..|..
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 2233 46678888888888888888888888888888 777666655543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-12 Score=132.54 Aligned_cols=253 Identities=13% Similarity=0.043 Sum_probs=149.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHH
Q 044131 348 VLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN--PVTVSSILSAC 422 (784)
Q Consensus 348 ~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~ 422 (784)
+.......|...|++++|...|++..+ .+...|..+...|.+.|++++|++.|++....+..|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344556677777788888777776532 3445677777777777777777777777776332222 22356666666
Q ss_pred hhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHH
Q 044131 423 AQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQ 499 (784)
Q Consensus 423 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 499 (784)
...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|++..+ .+...|..+...+...+++++|++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777766653 33455666666666666666666666666552 244455555522223346666666
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHccCC---HHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 044131 500 LFSEMLHSGIRPS-GVTFLSVLYACSHAGL---VREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL 575 (784)
Q Consensus 500 ~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m 575 (784)
.|+++.+. .|+ ...+..+...+...|. .++|...|+...+...-.|+.. -
T Consensus 164 ~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~----------------------- 217 (272)
T 3u4t_A 164 SFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K----------------------- 217 (272)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H-----------------------
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h-----------------------
Confidence 66666553 232 3344444444444444 4444444444432211111100 0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 044131 576 AVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAER 629 (784)
Q Consensus 576 ~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 629 (784)
..-..+|..+...+...|+++.|...++++++++|+++.....+..+....+
T Consensus 218 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 218 --DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred --HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 0012467778888899999999999999999999999988887776655544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.44 E-value=8.2e-12 Score=125.42 Aligned_cols=195 Identities=12% Similarity=-0.023 Sum_probs=138.6
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYAC 523 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 523 (784)
...+..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3455566666677777777777776654 2356677777777777777777777777777642 33556666777777
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 044131 524 SHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLA 600 (784)
Q Consensus 524 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a 600 (784)
...|++++|.++|+.+.+ .+..|+ ...+..+...+.+.|++++|.+.+++.. ..| +..+|..+...+...|+++.|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777764 224453 5566777777777888888877777652 233 466777777888888888888
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 601 RVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 601 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...++++++..|+++..+..++.+|...|++++|.+.++.+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888777765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-12 Score=135.39 Aligned_cols=243 Identities=14% Similarity=0.059 Sum_probs=193.0
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhhCc-hHHHHHHHHHHHHcCCCCchhhHhHHHH
Q 044131 378 ASWNAMIAGYTQNGLTEEAISLFQEMQASKVAP-NPVTVSSILSACAQLGA-ISLGKWVHELVKSRNFESNIYVSTALID 455 (784)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~-~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 455 (784)
..|+.+...+.+.|++++|++.|++.+.. .| +...|..+..++...|+ +++|...++.+++.. +.+..+++.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 46777777788888888888888888764 44 45666777777778885 888888888888765 456778888888
Q ss_pred HHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHH
Q 044131 456 MYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSH-AGLVRE 531 (784)
Q Consensus 456 ~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~-~g~~~~ 531 (784)
.|.+.|++++|+..|+++. ..+...|..+..++...|++++|+..|+++++.. +-+...|..+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 8888899999999988776 3577899999999999999999999999999853 2356678888888888 666577
Q ss_pred H-----HHHHHHhHHhcCCCCC-cchHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 044131 532 G-----DEIFQSMIHDHGFKPL-AEHYACMVDILGRAG--QLEKALEFIKGLAVEP-GPAVWGALLGACMIHK------- 595 (784)
Q Consensus 532 a-----~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g--~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~g------- 595 (784)
| +++|+..++ +.|+ ...|..+..+|...| ++++|.++++++...| +...+..|...+...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 578888774 4565 678888888999888 6899999998876555 4568888888888764
Q ss_pred -C-HHHHHHHHHHH-hcCCCCCcchHHHHHHHHHh
Q 044131 596 -D-TNLARVASEKL-FELDPENVGYHVLLSNIYSA 627 (784)
Q Consensus 596 -~-~~~a~~~~~~~-~~l~p~~~~~~~~l~~~y~~ 627 (784)
+ ++.|..+++++ .+++|....+|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 3 58999999999 99999999999888876654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.8e-11 Score=130.44 Aligned_cols=345 Identities=11% Similarity=0.051 Sum_probs=155.7
Q ss_pred HHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh---HHHHHHHhcCCCCCeeeHHHHHHHHHhCC----
Q 044131 218 PAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEV---ERAELLFRDIVRPDLISCNAMISGYTCNG---- 290 (784)
Q Consensus 218 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~d~~~~~~li~~~~~~g---- 290 (784)
....+.|++++|.+++..+.+.| ++..+..|..+|...|+. ++|...|++..+.+...+..+...+...|
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 33445566666777666666655 233444555666667777 78888888776667777777776555555
Q ss_pred -CchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCCh---hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC----CH
Q 044131 291 -KTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHL---HLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLN----EM 362 (784)
Q Consensus 291 -~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g----~~ 362 (784)
++++|+..|++..+.|... .+..+-..+...+.. ..+.+.+......| +......|..+|...+ ..
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 6678888888887765432 333333333322221 22333333333333 2333444445554444 33
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHhCC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHH
Q 044131 363 EAARKLFDESSEKSLASWNAMIAGYTQNG---LTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVK 439 (784)
Q Consensus 363 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 439 (784)
+.+..+++.....+..++..|...|.+.| +.++|++.|++. .
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a-----------------------------------a 206 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAG-----------------------------------V 206 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH-----------------------------------H
Confidence 33444444444444445555555555544 444455444444 4
Q ss_pred HcCCCCchhhHhHHHHHHHhc----CCHHHHHHHHhhcCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCC
Q 044131 440 SRNFESNIYVSTALIDMYAKC----GNIVEARELFDLMSHKSEVTWNTMISG-Y--GLHGHGLEALQLFSEMLHSGIRPS 512 (784)
Q Consensus 440 ~~g~~~~~~~~~~Li~~y~k~----g~~~~A~~~f~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~pd 512 (784)
+.| +++...+..|..+|... +++++|...|++....+...+..|... | ...|+.++|++.|++..+.| +
T Consensus 207 ~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~ 282 (452)
T 3e4b_A 207 SRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---Q 282 (452)
T ss_dssp HTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---C
T ss_pred HCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---C
Confidence 444 22233223444444333 455555555555442234445555444 2 23566666666666666554 3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044131 513 GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACM 592 (784)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~ 592 (784)
...+..+...|. .|. | ...++++|.+++++.. .-++..+..|...+.
T Consensus 283 ~~A~~~Lg~~y~-~G~---------------g----------------~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 283 PRAELLLGKLYY-EGK---------------W----------------VPADAKAAEAHFEKAV-GREVAADYYLGQIYR 329 (452)
T ss_dssp HHHHHHHHHHHH-HCS---------------S----------------SCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCC---------------C----------------CCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 333333333333 220 0 0114455555555444 334444444444443
Q ss_pred h----cCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 044131 593 I----HKDTNLARVASEKLFELDPENVGYHVLLSNIYSA----ERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 593 ~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~ 645 (784)
. ..|.++|...++++.+ +.++.....|+.+|.. ..+.++|...++.-.+.|
T Consensus 330 ~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 330 RGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 3 2256666666666554 2344555666666653 345666666665555544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-11 Score=121.46 Aligned_cols=196 Identities=15% Similarity=0.025 Sum_probs=142.9
Q ss_pred chhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044131 446 NIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYA 522 (784)
Q Consensus 446 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 522 (784)
+..++..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 45566667777777777777777777654 2456677777777777888888888888777642 3355667777777
Q ss_pred HHcc-CCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHH
Q 044131 523 CSHA-GLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTN 598 (784)
Q Consensus 523 ~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~ 598 (784)
+... |++++|..+|+.+.+ .+..|+ ...+..+...+.+.|++++|.+.++++. ..| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 7777 888888888887765 223343 5667777777888888888888877652 333 4667777888888888888
Q ss_pred HHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 599 LARVASEKLFELDP-ENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 599 ~a~~~~~~~~~l~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.|...++++++..| +++..+..++.++...|+.+++...++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 88888888888888 7777888888888888888888888777654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-11 Score=121.29 Aligned_cols=205 Identities=15% Similarity=0.076 Sum_probs=138.5
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHH
Q 044131 377 LASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDM 456 (784)
Q Consensus 377 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 456 (784)
...|..+...|...|++++|++.|+++.... +.+... +..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~-----------------------------------~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADA-----------------------------------HAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHH-----------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHH-----------------------------------HHHHHHH
Confidence 4567777777777788888888777776542 223334 4444444
Q ss_pred HHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHH
Q 044131 457 YAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREG 532 (784)
Q Consensus 457 y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a 532 (784)
|.+.|++++|.+.|+++. ..+...|..+...|...|++++|+++|+++.+.+..| +...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555554433 2345566666666777777777777777766633344 344566666777777777777
Q ss_pred HHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 044131 533 DEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGL-AVE-PGPAVWGALLGACMIHKDTNLARVASEKLFE 609 (784)
Q Consensus 533 ~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 609 (784)
.++|+...+. .| +...+..+...+.+.|++++|.+.++++ ... .+...|..+...+...|+.+.|...++++++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777777643 23 3566777888888888888888888775 233 4566788888888899999999999999999
Q ss_pred CCCCCcchHHH
Q 044131 610 LDPENVGYHVL 620 (784)
Q Consensus 610 l~p~~~~~~~~ 620 (784)
+.|+++.....
T Consensus 238 ~~p~~~~~~~~ 248 (252)
T 2ho1_A 238 LYPGSLEYQEF 248 (252)
T ss_dssp HCTTSHHHHHH
T ss_pred HCCCCHHHHHH
Confidence 99998765543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.2e-12 Score=126.53 Aligned_cols=215 Identities=10% Similarity=0.033 Sum_probs=112.3
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHH
Q 044131 377 LASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDM 456 (784)
Q Consensus 377 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 456 (784)
...|..+...+.+.|++++|+..|+++.... +.+...+..+...+...|++++|...+..+.+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------- 87 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-------------- 87 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------
Confidence 3455556666666666666666666665431 1223333333333344444444444443333321
Q ss_pred HHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 044131 457 YAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIF 536 (784)
Q Consensus 457 y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 536 (784)
..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|..++
T Consensus 88 ------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~ 148 (243)
T 2q7f_A 88 ------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYL 148 (243)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred ------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 2244555555666666666666666666666542 234455556666666666666666666
Q ss_pred HHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 537 QSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-V-EPGPAVWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 537 ~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
+.+.+.. +.+...+..+...+.+.|++++|.+.++++. . +.+..+|..+..++...|+.+.|...++++++++|++
T Consensus 149 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 149 QRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 6665431 1235556666666777777777777766542 2 2346677777778888888888888888888888887
Q ss_pred cchHHHHHHHHHh
Q 044131 615 VGYHVLLSNIYSA 627 (784)
Q Consensus 615 ~~~~~~l~~~y~~ 627 (784)
+..+..++.+...
T Consensus 227 ~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 227 MLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHTC----
T ss_pred HHHHHHHHHHHhh
Confidence 7777666555443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=7.6e-11 Score=120.09 Aligned_cols=226 Identities=9% Similarity=-0.077 Sum_probs=132.6
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----hCchHHHHHHHHHHHHcCCCCchhhHh
Q 044131 376 SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQ----LGAISLGKWVHELVKSRNFESNIYVST 451 (784)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~ 451 (784)
+..++..+...|.+.|++++|+..|++.... -+...+..+...+.. .+++++|...+..+.+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445555555666666666666666666552 233444445555555 566666666666655554 445555
Q ss_pred HHHHHHHh----cCCHHHHHHHHhhcC-CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044131 452 ALIDMYAK----CGNIVEARELFDLMS-HKSEVTWNTMISGYGL----HGHGLEALQLFSEMLHSGIRPSGVTFLSVLYA 522 (784)
Q Consensus 452 ~Li~~y~k----~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 522 (784)
.|..+|.. .|++++|...|++.. ..+..++..+...|.. .|++++|++.|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 56666666 666666666666544 2355566666666666 677777777777776654 34455555555
Q ss_pred HHc----cCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 044131 523 CSH----AGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGR----AGQLEKALEFIKGLAVEPGPAVWGALLGACMI- 593 (784)
Q Consensus 523 ~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~- 593 (784)
+.. .++.++|.++|+...+. .+...+..+..+|.+ .+++++|.+.+++..-..+...+..|...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 555 66777777777666532 133455556666666 66666666666554211224555666666666
Q ss_pred ---cCCHHHHHHHHHHHhcCCCCC
Q 044131 594 ---HKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 594 ---~g~~~~a~~~~~~~~~l~p~~ 614 (784)
.++.++|...++++.+++|++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHH
Confidence 666666666666666666653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.39 E-value=4e-11 Score=117.62 Aligned_cols=208 Identities=13% Similarity=0.034 Sum_probs=141.7
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHH
Q 044131 376 SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALID 455 (784)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 455 (784)
+...|..+...|...|++++|++.|+++.... | .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~----------------------------------~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--P----------------------------------KNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------------------TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c----------------------------------cchHHHHHHHH
Confidence 34456666666666666666666666665432 2 22334444555
Q ss_pred HHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHH
Q 044131 456 MYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLH-GHGLEALQLFSEMLHSGIRPS-GVTFLSVLYACSHAGLVR 530 (784)
Q Consensus 456 ~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~ 530 (784)
.|...|++++|...|+++. ..+..+|..+...|... |++++|+..|+++.+.+..|+ ...+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555543 23555677777777777 778888888877776333343 456667777788888888
Q ss_pred HHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044131 531 EGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VE--PGPAVWGALLGACMIHKDTNLARVASEK 606 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~--p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 606 (784)
+|..+|+.+.+. .|+ ...+..+...+.+.|++++|.+.++++- .. .+...|..+...+...|+.+.+...++.
T Consensus 131 ~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 131 LAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 888888877643 343 6677778888888888888888887752 22 4566777777788889999999999999
Q ss_pred HhcCCCCCcchHHHHH
Q 044131 607 LFELDPENVGYHVLLS 622 (784)
Q Consensus 607 ~~~l~p~~~~~~~~l~ 622 (784)
+.+..|+++.....+.
T Consensus 208 ~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 208 LQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHHCTTCHHHHHHHC
T ss_pred HHHhCCCCHHHHHHhc
Confidence 9999999887766553
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-11 Score=119.85 Aligned_cols=189 Identities=13% Similarity=0.049 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHH
Q 044131 379 SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYA 458 (784)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 458 (784)
.|..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|...++.+++.. +.+...+..+...|.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444444444444444444444444321 1123333334444444444444444444444432 223334444444444
Q ss_pred hc-----------CCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044131 459 KC-----------GNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACS 524 (784)
Q Consensus 459 k~-----------g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 524 (784)
+. |++++|...|++.. ..+...|..+...|...|++++|+..|++..+.. .+...+..+..++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 44 55556655555543 1244556666666666666666666666666554 45555566666666
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHh
Q 044131 525 HAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKG 574 (784)
Q Consensus 525 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~ 574 (784)
..|++++|...|+...+. .|+ ...+..+..++.+.|++++|.+.+++
T Consensus 163 ~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC-------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666666666666665532 333 44555555566666666666655544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-10 Score=117.76 Aligned_cols=223 Identities=13% Similarity=-0.023 Sum_probs=193.5
Q ss_pred CHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHh----cCCHHHHHHHHhhcCC-CCHHHHHHHH
Q 044131 411 NPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAK----CGNIVEARELFDLMSH-KSEVTWNTMI 485 (784)
Q Consensus 411 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li 485 (784)
+..++..+-..+...+++++|...+..+.+. .+...+..|..+|.. .|++++|...|++..+ .+..+|..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4566777778888999999999999999983 356778889999999 9999999999998763 4788999999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhHHhcCCCCCcchHHHHHH
Q 044131 486 SGYGL----HGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSH----AGLVREGDEIFQSMIHDHGFKPLAEHYACMVD 557 (784)
Q Consensus 486 ~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 557 (784)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .|+.++|.++|+...+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 77788888889998 99999999999998753 3 5667778888
Q ss_pred HHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh--
Q 044131 558 ILGR----AGQLEKALEFIKGLAVEPGPAVWGALLGACMI----HKDTNLARVASEKLFELDPENVGYHVLLSNIYSA-- 627 (784)
Q Consensus 558 ~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~-- 627 (784)
+|.+ .+++++|.+.+++.--..++..+..+...+.. .++.++|...++++++.+| +..+..|+.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8888 99999999999886423467788889999999 9999999999999999877 6788999999999
Q ss_pred --cCChHHHHHHHHHHHhCC
Q 044131 628 --ERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 628 --~g~~~~a~~~~~~m~~~~ 645 (784)
.|++++|.+.++...+.|
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 999999999998877654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=8.3e-12 Score=124.38 Aligned_cols=195 Identities=10% Similarity=0.077 Sum_probs=154.4
Q ss_pred chhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044131 446 NIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYA 522 (784)
Q Consensus 446 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 522 (784)
....+..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 45567777888889999999999998875 3467899999999999999999999999999853 3467788889999
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHH
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-V-EPGPAVWGALLGACMIHKDTNLA 600 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~~~~~~ll~a~~~~g~~~~a 600 (784)
+...|++++|.++|+.+.+.. +.+...+..+...+.+.|++++|.+.++++. . +.+..+|..+...+...|+++.|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998642 2346788899999999999999999998863 3 34677999999999999999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 601 RVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 601 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...++++++..|+++..+..++.+|...|++++|.+.++...+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999998765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.8e-11 Score=131.88 Aligned_cols=338 Identities=11% Similarity=0.028 Sum_probs=165.4
Q ss_pred HHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCCh---HHHHHHhccCCCCCcccHHHHHHHHHcCC-----
Q 044131 117 AASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWV---KSARKVFDKMPEKDTVLWNSMISGLMKNC----- 188 (784)
Q Consensus 117 ~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g----- 188 (784)
...+.|++++|.+++..+.+.| ++..+..|-.+|...|+. ++|.+.|++..+.+...+..|-..+...|
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 3445667777777777777765 223334455556666777 88888888877667777777777566655
Q ss_pred CchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccch---hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----Ch
Q 044131 189 CFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQEL---RLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCG----EV 261 (784)
Q Consensus 189 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~ 261 (784)
++++|+..|++..+. |... .+..+-..+...+.. ..+.+.+....+.| ++.....|..+|...+ ..
T Consensus 89 ~~~~A~~~~~~Aa~~-g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 89 EHHEAESLLKKAFAN-GEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHT-TCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred CHHHHHHHHHHHHHC-CCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 667888888888775 4322 444444444443332 23444444444444 3556667777777777 45
Q ss_pred HHHHHHHhcCCCCCeeeHHHHHHHHHhCC---CchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHH
Q 044131 262 ERAELLFRDIVRPDLISCNAMISGYTCNG---KTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCL 338 (784)
Q Consensus 262 ~~A~~~f~~~~~~d~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 338 (784)
+.|..+++.....+...+..|...|.+.| +.++|++.|++..+.|.
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~------------------------------- 210 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT------------------------------- 210 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-------------------------------
Confidence 55666666666666668888888888888 78888888888776652
Q ss_pred HhCCCcchHHHHHHHHHHHhc----CCHHHHHHHHhhcCCCChhHHHHHHHH-H--HhCCChhHHHHHHHHHHhCCCCCC
Q 044131 339 KSGIVSNSSVLTALSTVYSRL----NEMEAARKLFDESSEKSLASWNAMIAG-Y--TQNGLTEEAISLFQEMQASKVAPN 411 (784)
Q Consensus 339 ~~g~~~~~~~~~~Li~~y~~~----g~~~~A~~~f~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~pd 411 (784)
++...+..|..+|... ++.++|.+.|+.....+...+..|... | ...+++++|++.|++....| +
T Consensus 211 -----~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~ 282 (452)
T 3e4b_A 211 -----VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---Q 282 (452)
T ss_dssp -----SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---C
T ss_pred -----HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---C
Confidence 2222223333344332 455555555555442234445554444 2 23455666666666655544 3
Q ss_pred HHHHHHHHHHHhhhC-----chHHHHHHHHHHHHcCCCCchhhHhHHHHHHHh----cCCHHHHHHHHhhcCC-CCHHHH
Q 044131 412 PVTVSSILSACAQLG-----AISLGKWVHELVKSRNFESNIYVSTALIDMYAK----CGNIVEARELFDLMSH-KSEVTW 481 (784)
Q Consensus 412 ~~t~~~ll~a~~~~~-----~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~~-~~~~~~ 481 (784)
...+..+-..+. .| +.++|...+.... +.++.....|..+|.. ..++++|...|++..+ .+....
T Consensus 283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~ 357 (452)
T 3e4b_A 283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSAD 357 (452)
T ss_dssp HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHH
Confidence 333333333332 22 4444444444443 1233334444444443 1244445544444332 223333
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 044131 482 NTMISGYGL----HGHGLEALQLFSEMLHSG 508 (784)
Q Consensus 482 ~~li~~~~~----~g~~~~A~~~~~~m~~~g 508 (784)
..|...|.. ..+..+|...|++..+.|
T Consensus 358 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 358 FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 333333332 234455555555555444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=5.5e-11 Score=126.74 Aligned_cols=223 Identities=9% Similarity=0.039 Sum_probs=191.3
Q ss_pred HHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCC-HHHHHHHHhhcC---CCCHHHHHHHHHHH
Q 044131 413 VTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGN-IVEARELFDLMS---HKSEVTWNTMISGY 488 (784)
Q Consensus 413 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~-~~~A~~~f~~~~---~~~~~~~~~li~~~ 488 (784)
..+..+...+...|+++.|...+..+++.. +.+..+++.+...|.+.|+ +++|+..|+++. ..+...|+.+...|
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456666677888999999999999999876 5678889999999999997 999999999886 35788999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHh-cCCHH
Q 044131 489 GLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGR-AGQLE 566 (784)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r-~g~~~ 566 (784)
...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++++. .|+ ...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999853 336678899999999999999999999999854 565 7789999999999 67768
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC--------
Q 044131 567 KA-----LEFIKGL-AVEP-GPAVWGALLGACMIHK--DTNLARVASEKLFELDPENVGYHVLLSNIYSAER-------- 629 (784)
Q Consensus 567 eA-----~~~~~~m-~~~p-~~~~~~~ll~a~~~~g--~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-------- 629 (784)
+| ++.+++. .+.| +...|..+...+...| +.+.|...++++ +.+|+++..+..|+.+|...|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 88 4666665 3556 5679999999999888 689999999998 999999999999999999975
Q ss_pred -ChHHHHHHHHHH
Q 044131 630 -DYLQAATVRQVV 641 (784)
Q Consensus 630 -~~~~a~~~~~~m 641 (784)
..++|.++++.+
T Consensus 332 ~~~~~A~~~~~~l 344 (382)
T 2h6f_A 332 DILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 358999999887
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-10 Score=115.88 Aligned_cols=226 Identities=10% Similarity=0.005 Sum_probs=180.9
Q ss_pred hhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhHHHHHHH
Q 044131 312 STIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSE--KS----LASWNAMIA 385 (784)
Q Consensus 312 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~ 385 (784)
..+......+...|+++.|...+..+++.. +.+..++..+...|...|++++|...|+.... .+ ..+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345556677889999999999999999875 34566888899999999999999999987654 22 235899999
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHH-HHHHhcCCHH
Q 044131 386 GYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALI-DMYAKCGNIV 464 (784)
Q Consensus 386 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li-~~y~k~g~~~ 464 (784)
.|.+.|++++|++.|++..... +.+...+..+...+...|++++|...+..+++.. +.+..++..+. ..|. .++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHHH
Confidence 9999999999999999998853 3355788889999999999999999999998763 45677777777 5555 46999
Q ss_pred HHHHHHhhcC---CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCCH------HHHHHHHHHHHccCCHHH
Q 044131 465 EARELFDLMS---HKSEVTWNTMISGYGLHGH---GLEALQLFSEMLHSG-IRPSG------VTFLSVLYACSHAGLVRE 531 (784)
Q Consensus 465 ~A~~~f~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~pd~------~t~~~ll~a~~~~g~~~~ 531 (784)
+|...|+++. ..+...|..+...+...|+ .++|+..|++..+.. -.|+. .+|..+...+...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999876 3457788888899998888 888999999988742 12432 456667777888888888
Q ss_pred HHHHHHHhHH
Q 044131 532 GDEIFQSMIH 541 (784)
Q Consensus 532 a~~~~~~m~~ 541 (784)
|.++|++..+
T Consensus 240 A~~~~~~al~ 249 (272)
T 3u4t_A 240 ADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888774
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-11 Score=134.29 Aligned_cols=259 Identities=15% Similarity=0.006 Sum_probs=170.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHhhhCchHHHHHHHHHHHHc----C-CCCchhhHhH
Q 044131 383 MIAGYTQNGLTEEAISLFQEMQASKVAPN-P----VTVSSILSACAQLGAISLGKWVHELVKSR----N-FESNIYVSTA 452 (784)
Q Consensus 383 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g-~~~~~~~~~~ 452 (784)
+...+.+.|++++|+..|++..... |+ . ..+..+...+...|+++.|...+..+.+. + .+....++..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444555566666666665555532 22 1 24444555555566666666655555432 1 1123455666
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC---------CCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHH
Q 044131 453 LIDMYAKCGNIVEARELFDLMSH---------KSEVTWNTMISGYGLHGH-----------------GLEALQLFSEMLH 506 (784)
Q Consensus 453 Li~~y~k~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~ 506 (784)
+...|...|++++|...|++..+ ....+|..+...|...|+ +++|++.|++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 67777777777777777766542 123467777777788888 7888887777654
Q ss_pred C----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 044131 507 S----GIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILGRAGQLEKALEFIKGLA- 576 (784)
Q Consensus 507 ~----g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r~g~~~eA~~~~~~m~- 576 (784)
. +-.| ...++..+...+...|++++|.++|++..+...-.++ ...+..+...|...|++++|.+.+++.-
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 1111 1235667777888888888888888877643211112 2367788888889999999988887651
Q ss_pred C---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 577 V---EPG----PAVWGALLGACMIHKDTNLARVASEKLFELDPEN------VGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 577 ~---~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
. ..+ ..+|..+...+...|+++.|...+++++++.++. ...+..++.+|...|++++|.+.++...+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 111 4577888888999999999999999998865433 34788899999999999999999877654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-09 Score=120.43 Aligned_cols=453 Identities=11% Similarity=0.047 Sum_probs=279.2
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCC---chHHHHHHHHH
Q 044131 127 GVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPE---KDTVLWNSMISGLMKNCC---FQDSIWVFGDM 200 (784)
Q Consensus 127 a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m 200 (784)
-...++..++.. +.|...|..++..+.+.+.++.|+.+|+++.. .....|..-+..-.+.|. .+.+.++|++.
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 334455555554 46888999999999999999999999998864 355678888888888888 99999999998
Q ss_pred HHcCCCCCChhhHHhHHHHHhcccch--------hHHHHHHHHHHH-hCC-CCc-hhHHHHHHHHHHh---------cCC
Q 044131 201 VRNGGTWLDSTSVAAVLPAVAEVQEL--------RLGMEIQCLGLK-LGF-HDH-VYVLTGLVSFYSK---------CGE 260 (784)
Q Consensus 201 ~~~~g~~pd~~t~~~ll~a~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~y~~---------~g~ 260 (784)
.......|+...|..-+.-....++. +..+++|+.++. .|. .++ ..+|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 86411137777776666655444432 334577777665 355 453 4577777765442 234
Q ss_pred hHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHh
Q 044131 261 VERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKS 340 (784)
Q Consensus 261 ~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 340 (784)
++.++++|++...-....+..+- ..|...... + +..+-..++.-. ..+++.|+..+....+.
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w-------------~~Y~~fe~~-~--~~~~a~~~~~e~--~~~y~~Ar~~~~e~~~~ 271 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMW-------------QRYTQWEQD-V--NQLTARRHIGEL--SAQYMNARSLYQDWLNI 271 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHH-------------HHHHHHHHH-H--CTTTHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccHHHHHHH-------------HHHHHHHHh-c--CcchHHHHHHHh--hHHHHHHHHHHHHHHHH
Confidence 56666666665431111111111 111111110 0 000000000000 00111122222111110
Q ss_pred --CCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhCCC-------hhHHHHHHHHHHh
Q 044131 341 --GIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEK------SLASWNAMIAGYTQNGL-------TEEAISLFQEMQA 405 (784)
Q Consensus 341 --g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~ 405 (784)
++... +-+ . ... ......+.. ....|...|.---.++. .+.+..+|++...
T Consensus 272 ~~~l~r~----------~p~-~-~~~--~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~ 337 (679)
T 4e6h_A 272 TKGLKRN----------LPI-T-LNQ--ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ 337 (679)
T ss_dssp TTTCCCC----------CCS-S-STT--CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHhHhhc----------ccc-c-ccc--chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH
Confidence 00000 000 0 000 000000000 12345555543333321 2335567777766
Q ss_pred CCCCCCHHHHHHHHHHHhhhCchHHHH-HHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---------
Q 044131 406 SKVAPNPVTVSSILSACAQLGAISLGK-WVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH--------- 475 (784)
Q Consensus 406 ~g~~pd~~t~~~ll~a~~~~~~~~~a~-~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--------- 475 (784)
. ..-+...|.....-+...|+.+.|. .+++.++.. .+.+..++-.++..+-+.|+++.|+++|+.+..
T Consensus 338 ~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~ 415 (679)
T 4e6h_A 338 H-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAAL 415 (679)
T ss_dssp H-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 4 3446667777777777888888996 999999875 366777788899999999999999999988753
Q ss_pred ----CC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHc-cCCHHHHHHHHH
Q 044131 476 ----KS------------EVTWNTMISGYGLHGHGLEALQLFSEMLHS-GIRPSGVTFLSVLYACSH-AGLVREGDEIFQ 537 (784)
Q Consensus 476 ----~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~t~~~ll~a~~~-~g~~~~a~~~~~ 537 (784)
|+ ...|-..+....+.|..+.|..+|.+..+. + .+....|......-.+ .++.+.|..+|+
T Consensus 416 ~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife 494 (679)
T 4e6h_A 416 MEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLE 494 (679)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred hhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 21 236888888888899999999999999986 2 1223334332222223 355999999999
Q ss_pred HhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 044131 538 SMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-VEP----GPAVWGALLGACMIHKDTNLARVASEKLFELDP 612 (784)
Q Consensus 538 ~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p 612 (784)
..++.++ -+...+...++.+...|+.+.|..+|++.- ..| ....|...+.--..+|+.+.+..+.+++.+..|
T Consensus 495 ~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 495 LGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9997643 235567788999999999999999999863 233 245999999999999999999999999999999
Q ss_pred CCcch
Q 044131 613 ENVGY 617 (784)
Q Consensus 613 ~~~~~ 617 (784)
+++..
T Consensus 573 ~~~~~ 577 (679)
T 4e6h_A 573 EVNKL 577 (679)
T ss_dssp TCCHH
T ss_pred CCcHH
Confidence 87643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-11 Score=130.64 Aligned_cols=263 Identities=16% Similarity=0.030 Sum_probs=153.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhhCchHHHHHHHHHHHHc----CCC-CchhhH
Q 044131 380 WNAMIAGYTQNGLTEEAISLFQEMQASKVAPN----PVTVSSILSACAQLGAISLGKWVHELVKSR----NFE-SNIYVS 450 (784)
Q Consensus 380 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~-~~~~~~ 450 (784)
|......+...|++++|+..|++..... +.+ ...+..+...+...|+++.|...+..+.+. +-. ....++
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3333444444444445544444444431 111 123333444444445555554444443321 111 123345
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCC-----CC----HHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 044131 451 TALIDMYAKCGNIVEARELFDLMSH-----KS----EVTWNTMISGYGLHGH--------------------GLEALQLF 501 (784)
Q Consensus 451 ~~Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 501 (784)
..+...|...|++++|...|++..+ ++ ..+|..+...|...|+ +++|++.|
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 5566666666666666666655431 11 3366666667777777 77777777
Q ss_pred HHHHHC----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHH
Q 044131 502 SEMLHS----GIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILGRAGQLEKALEFI 572 (784)
Q Consensus 502 ~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r~g~~~eA~~~~ 572 (784)
++..+. +-.|. ..++..+...+...|++++|..+|+...+...-.++ ...+..+...|...|++++|.+.+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 665431 11111 234666667777778888888777776543211122 236777777788888888888777
Q ss_pred HhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------cchHHHHHHHHHhcCChHHHHHHH
Q 044131 573 KGLA----VEPG----PAVWGALLGACMIHKDTNLARVASEKLFELDPEN------VGYHVLLSNIYSAERDYLQAATVR 638 (784)
Q Consensus 573 ~~m~----~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~ 638 (784)
++.- -.++ ..++..+...+...|+++.|...+++++++.|.. +..+..++.+|...|++++|.+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6541 1112 4467777788888888888888888888764433 456778888888888888888887
Q ss_pred HHHHh
Q 044131 639 QVVKK 643 (784)
Q Consensus 639 ~~m~~ 643 (784)
+...+
T Consensus 331 ~~al~ 335 (406)
T 3sf4_A 331 EKHLE 335 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.3e-12 Score=139.70 Aligned_cols=206 Identities=12% Similarity=-0.010 Sum_probs=170.0
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCH-HHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044131 428 ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNI-VEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSE 503 (784)
Q Consensus 428 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~-~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (784)
++.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444443322 34667777777888888888 88888887765 34577899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhc--------CCH
Q 044131 504 MLHSGIRPSGVTFLSVLYACSHA---------GLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRA--------GQL 565 (784)
Q Consensus 504 m~~~g~~pd~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~--------g~~ 565 (784)
..+. .|+...+..+...+... |++++|.+.|++..+. .|+ ...|..+..+|.+. |++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9884 57778888888889888 9999999999998754 454 77888899999888 999
Q ss_pred HHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 044131 566 EKALEFIKGLA-VEP----GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQ 639 (784)
Q Consensus 566 ~eA~~~~~~m~-~~p----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 639 (784)
++|.+.+++.- ..| +...|..+..++...|++++|...++++++++|+++..+..++.++...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999998863 455 678999999999999999999999999999999999999999999999999999987553
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.8e-11 Score=125.60 Aligned_cols=259 Identities=16% Similarity=0.038 Sum_probs=167.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhhCchHHHHHHHHHHHHc----CCC-CchhhHhHHH
Q 044131 384 IAGYTQNGLTEEAISLFQEMQASKVAPN----PVTVSSILSACAQLGAISLGKWVHELVKSR----NFE-SNIYVSTALI 454 (784)
Q Consensus 384 i~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~-~~~~~~~~Li 454 (784)
...+...|++++|+..|+++.... +.+ ...+..+...+...|+++.|...+..+.+. +-. ....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 344455555555555555555432 111 133444444555555555555555544322 111 1244556667
Q ss_pred HHHHhcCCHHHHHHHHhhcCC-----CC----HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH
Q 044131 455 DMYAKCGNIVEARELFDLMSH-----KS----EVTWNTMISGYGLHGH--------------------GLEALQLFSEML 505 (784)
Q Consensus 455 ~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~ 505 (784)
..|...|++++|...|++..+ ++ ..++..+...|...|+ +++|++.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 777777777777777766431 22 3366777777777777 788888777765
Q ss_pred HC----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC
Q 044131 506 HS----GIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILGRAGQLEKALEFIKGLA 576 (784)
Q Consensus 506 ~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r~g~~~eA~~~~~~m~ 576 (784)
.. +-.|. ..++..+...+...|++++|.++++...+...-.++ ...+..+...+.+.|++++|.+.+++.-
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 11111 235667777788888888888888877643211112 3367788888889999999988887651
Q ss_pred ----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 577 ----VEPG----PAVWGALLGACMIHKDTNLARVASEKLFELDPEN------VGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 577 ----~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
-.++ ..++..+...+...|+++.|...+++++++.|.. ...+..++.+|...|++++|.+.++...
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 1122 4477888888999999999999999998865543 3477889999999999999999988776
Q ss_pred h
Q 044131 643 K 643 (784)
Q Consensus 643 ~ 643 (784)
+
T Consensus 331 ~ 331 (338)
T 3ro2_A 331 E 331 (338)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.6e-11 Score=122.24 Aligned_cols=217 Identities=11% Similarity=-0.006 Sum_probs=180.1
Q ss_pred hhhCchHHHHHHHHHHHHcCC---CCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHH
Q 044131 423 AQLGAISLGKWVHELVKSRNF---ESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLE 496 (784)
Q Consensus 423 ~~~~~~~~a~~i~~~~~~~g~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~ 496 (784)
...+++++|...+..+.+... +.+..++..+...|...|++++|...|+++. ..+..+|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345789999999999987632 2256788899999999999999999999876 3568899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 044131 497 ALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL- 575 (784)
Q Consensus 497 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m- 575 (784)
|++.|+++.+.. +.+..++..+...+...|++++|..+|+.+.+. .|+..........+.+.|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999853 335778889999999999999999999999854 566555555666677889999999999665
Q ss_pred C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC----CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 576 A-VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPE----NVGYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 576 ~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
. .+++...|. ++..+...++.+.|...++++++..|. ++..+..++.+|...|++++|.+.++...+.
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2 334444554 777788888999999999999988774 3678999999999999999999999988764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-10 Score=110.39 Aligned_cols=163 Identities=12% Similarity=0.041 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHH
Q 044131 477 SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACM 555 (784)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 555 (784)
+...|..+...|.+.|++++|++.|++.++.. +-+..++..+..++...|++++|...+...... .|+ ...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHHH
Confidence 45667777777778888888888888877742 224556777777778888888888888777643 333 5566667
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 044131 556 VDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQ 633 (784)
Q Consensus 556 v~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 633 (784)
...+...+++++|.+.+++.. ..| +..+|..+..++...|++++|+..++++++++|+++..+..++.+|...|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 777788888888888877652 334 566888888888889999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHh
Q 044131 634 AATVRQVVKK 643 (784)
Q Consensus 634 a~~~~~~m~~ 643 (784)
|.+.++...+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9988877654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-11 Score=132.08 Aligned_cols=254 Identities=11% Similarity=-0.002 Sum_probs=156.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhhhCchHHHHHHHHHHHHc----CCC-Cchh
Q 044131 379 SWNAMIAGYTQNGLTEEAISLFQEMQAS----KVAPN-PVTVSSILSACAQLGAISLGKWVHELVKSR----NFE-SNIY 448 (784)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~-~~~~ 448 (784)
.|..+...|...|++++|+..|++.... +-.|. ..++..+...+...|+++.|...+..+.+. +-. ....
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 128 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHH
Confidence 3444444444555555555544443221 11111 223334444444555555555554444322 100 0133
Q ss_pred hHhHHHHHHHhcCC--------------------HHHHHHHHhhcCC-----C----CHHHHHHHHHHHHHcCCHHHHHH
Q 044131 449 VSTALIDMYAKCGN--------------------IVEARELFDLMSH-----K----SEVTWNTMISGYGLHGHGLEALQ 499 (784)
Q Consensus 449 ~~~~Li~~y~k~g~--------------------~~~A~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~ 499 (784)
++..+...|...|+ +++|...|++... . ...+|..+...|...|++++|+.
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 45556666666666 6666666554321 1 23467777788888888888888
Q ss_pred HHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHHhcCCHHHHHH
Q 044131 500 LFSEMLHSGI-RPS----GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILGRAGQLEKALE 570 (784)
Q Consensus 500 ~~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r~g~~~eA~~ 570 (784)
.|++..+... .++ ..++..+...+...|++++|..+++...+...-.++ ...+..+...|.+.|++++|.+
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 8888765210 122 236777778888889999998888877643211112 4567788888999999999988
Q ss_pred HHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC------CCCcchHHHHHHHHHhcCChH
Q 044131 571 FIKGLA----VEPG----PAVWGALLGACMIHKDTNLARVASEKLFELD------PENVGYHVLLSNIYSAERDYL 632 (784)
Q Consensus 571 ~~~~m~----~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~y~~~g~~~ 632 (784)
.+++.- -.++ ..+|..+...+...|+++.|...+++++++. |.....+..++.+|...|+..
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 887651 1122 4478888889999999999999999998863 333556778888888888764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=7.5e-10 Score=114.98 Aligned_cols=220 Identities=10% Similarity=0.060 Sum_probs=162.6
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-------hhCch-------HHHHHHHHHHHHcCCCCchhhHhHHHHHHHh
Q 044131 394 EEAISLFQEMQASKVAPNPVTVSSILSACA-------QLGAI-------SLGKWVHELVKSRNFESNIYVSTALIDMYAK 459 (784)
Q Consensus 394 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~-------~~~~~-------~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 459 (784)
++|+..|++..... +-+...|..+...+. ..|+. ++|..+++.+++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666777766531 224445555554443 34664 7888888888874224456688888888889
Q ss_pred cCCHHHHHHHHhhcCC--C-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCCHHHHHH
Q 044131 460 CGNIVEARELFDLMSH--K-SEV-TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACS-HAGLVREGDE 534 (784)
Q Consensus 460 ~g~~~~A~~~f~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~-~~g~~~~a~~ 534 (784)
.|++++|..+|++..+ | +.. .|..+...+.+.|+.++|..+|++..+.. +++...|........ ..|+.++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999988763 3 343 89999999999999999999999998853 334445544433322 3699999999
Q ss_pred HHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 535 IFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA----VEP--GPAVWGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 535 ~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~----~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
+|+..++... -+...|..+++.+.+.|++++|..++++.- +.| ....|..++.....+|+.+.|..++++++
T Consensus 191 ~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999886531 246788889999999999999999998762 355 36689999999999999999999999999
Q ss_pred cCCCCCcch
Q 044131 609 ELDPENVGY 617 (784)
Q Consensus 609 ~l~p~~~~~ 617 (784)
+..|+++..
T Consensus 269 ~~~p~~~~~ 277 (308)
T 2ond_A 269 TAFREEYEG 277 (308)
T ss_dssp HHTTTTTSS
T ss_pred HHccccccc
Confidence 999986643
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.1e-11 Score=129.99 Aligned_cols=265 Identities=12% Similarity=0.039 Sum_probs=180.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CCh----hHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCC-CHHHHH
Q 044131 349 LTALSTVYSRLNEMEAARKLFDESSE---KSL----ASWNAMIAGYTQNGLTEEAISLFQEMQAS----KVAP-NPVTVS 416 (784)
Q Consensus 349 ~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~t~~ 416 (784)
+..+...|...|++++|...|++... .+. ..|..+...|...|++++|+..|++.... +-.| ....+.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 34455566677777777777765432 222 35666667777777777777777766442 1112 234555
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHHc----C-CCCchhhHhHHHHHHHhcCC-----------------HHHHHHHHhhcC
Q 044131 417 SILSACAQLGAISLGKWVHELVKSR----N-FESNIYVSTALIDMYAKCGN-----------------IVEARELFDLMS 474 (784)
Q Consensus 417 ~ll~a~~~~~~~~~a~~i~~~~~~~----g-~~~~~~~~~~Li~~y~k~g~-----------------~~~A~~~f~~~~ 474 (784)
.+...+...|+++.|...+..+.+. + .+....++..+...|...|+ +++|...|++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 5666667777777777777666543 1 12234566777778888888 788877776643
Q ss_pred C---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 044131 475 H---------KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGI-RPS----GVTFLSVLYACSHAGLVREGDEIFQSMI 540 (784)
Q Consensus 475 ~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 540 (784)
+ ....+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|.++|+...
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 1 1234777888888999999999999988876311 112 2367778888999999999999998876
Q ss_pred HhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 541 HDHGFKPL----AEHYACMVDILGRAGQLEKALEFIKGLA-V---EPG----PAVWGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 541 ~~~~~~p~----~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~---~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
+...-..+ ...+..+..+|.+.|++++|.+.+++.- + .++ ..++..+...+...|+.+.|...+++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 43211111 4677888899999999999999987651 1 112 3477888889999999999999999999
Q ss_pred cCCCC
Q 044131 609 ELDPE 613 (784)
Q Consensus 609 ~l~p~ 613 (784)
++.+.
T Consensus 371 ~~~~~ 375 (411)
T 4a1s_A 371 QLAXX 375 (411)
T ss_dssp HHCCH
T ss_pred HHHhh
Confidence 87654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=7.4e-11 Score=135.88 Aligned_cols=161 Identities=15% Similarity=0.150 Sum_probs=133.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHH
Q 044131 477 SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYAC 554 (784)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 554 (784)
+..+|+.|...|.+.|++++|++.|++.++. .|+ ..++..+..++...|++++|.+.|++.++ +.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 3557788888888888888888888888873 454 56777888888888888888888888774 3565 678888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 044131 555 MVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYL 632 (784)
Q Consensus 555 lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 632 (784)
+..+|.+.|++++|++.+++. .+.| +...|..|..++...|++++|+..++++++++|+++..+..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888888889999998888775 3556 46689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 044131 633 QAATVRQVVK 642 (784)
Q Consensus 633 ~a~~~~~~m~ 642 (784)
+|.+.+++..
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988876653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-10 Score=109.24 Aligned_cols=167 Identities=13% Similarity=0.045 Sum_probs=140.4
Q ss_pred CchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044131 445 SNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLY 521 (784)
Q Consensus 445 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 521 (784)
.+..+|..|...|.+.|++++|.+.|++.. ..+..+|..+...|.+.|++++|+..+++..... +.+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 356788889999999999999999998875 3467789999999999999999999999988753 334566777778
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 044131 522 ACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTN 598 (784)
Q Consensus 522 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~ 598 (784)
.+...++.+.+.+.+....+. .|+ ...+..+...|.+.|++++|++.+++. ...| ++.+|..+..++...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 888999999999999988753 444 677888999999999999999999876 3445 5779999999999999999
Q ss_pred HHHHHHHHHhcCCCCCc
Q 044131 599 LARVASEKLFELDPENV 615 (784)
Q Consensus 599 ~a~~~~~~~~~l~p~~~ 615 (784)
+|...++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999999864
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-08 Score=113.34 Aligned_cols=225 Identities=8% Similarity=0.014 Sum_probs=134.4
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHH-HHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 044131 331 NCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAAR-KLFDESS---EKSLASWNAMIAGYTQNGLTEEAISLFQEMQAS 406 (784)
Q Consensus 331 ~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~-~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 406 (784)
..++..++.. ++.+..+|-..+..+...|+.++|. ++|++.. ..+...|-..+...-+.|++++|.++|+++...
T Consensus 329 ~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 329 TYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3445555443 2345556666666666666666664 6665432 224445555666666666666666666666542
Q ss_pred C---------CCCC------------HHHHHHHHHHHhhhCchHHHHHHHHHHHHc-CCCCchhhHhHHHHHHHhcC-CH
Q 044131 407 K---------VAPN------------PVTVSSILSACAQLGAISLGKWVHELVKSR-NFESNIYVSTALIDMYAKCG-NI 463 (784)
Q Consensus 407 g---------~~pd------------~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~Li~~y~k~g-~~ 463 (784)
. -.|+ ...|...+....+.+.++.|+.++..+.+. + .....+|...+.+-.++| +.
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCH
Confidence 1 0131 234666666666777788888888887765 2 112333333333444444 47
Q ss_pred HHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 044131 464 VEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP--SGVTFLSVLYACSHAGLVREGDEIFQS 538 (784)
Q Consensus 464 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~t~~~ll~a~~~~g~~~~a~~~~~~ 538 (784)
+.|+++|+... ..+...|...+.-....|+.+.|..+|++.......+ ....|...+.--...|+.+.+.++.++
T Consensus 487 e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R 566 (679)
T 4e6h_A 487 KTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKR 566 (679)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888887765 2456667777777777788888888888877653222 223566666666677888888888888
Q ss_pred hHHhcCCCCCcchHHHHHHHHH
Q 044131 539 MIHDHGFKPLAEHYACMVDILG 560 (784)
Q Consensus 539 m~~~~~~~p~~~~~~~lv~~l~ 560 (784)
+.+. .|+......+++-|.
T Consensus 567 ~~~~---~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 567 FFEK---FPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHH---STTCCHHHHHHHHTC
T ss_pred HHHh---CCCCcHHHHHHHHhc
Confidence 8755 355555555566554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.9e-10 Score=117.00 Aligned_cols=275 Identities=12% Similarity=0.026 Sum_probs=144.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHh
Q 044131 279 CNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSR 358 (784)
Q Consensus 279 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~ 358 (784)
+......+...|++++|+..|++..... |+.... -..++..+...|..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~------------------------------~~~~~~~l~~~~~~ 55 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKT------------------------------LSAIYSQLGNAYFY 55 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHH------------------------------HHHHHHHHHHHHHH
Confidence 3344456667777777777777776642 221000 02334455555666
Q ss_pred cCCHHHHHHHHhhcCC---------CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhh
Q 044131 359 LNEMEAARKLFDESSE---------KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKV-APN----PVTVSSILSACAQ 424 (784)
Q Consensus 359 ~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~ 424 (784)
.|++++|...|++... ....+|..+...|...|++++|+..|.+...... .++ ..++..+...+..
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 56 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 6666666665554321 1133566666677777777777777766543210 011 1244444445555
Q ss_pred hCc--------------------hHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHH
Q 044131 425 LGA--------------------ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH--KSEVTWN 482 (784)
Q Consensus 425 ~~~--------------------~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~ 482 (784)
.|+ ++.|...+....+. +..... ....+|.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~~ 187 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL----------------------------VTALGDRAAQGRAFG 187 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhcCCHHHHHHHHH
Confidence 555 44444444433221 001100 0122444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----cchHH
Q 044131 483 TMISGYGLHGHGLEALQLFSEMLHSGI-RPS----GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL----AEHYA 553 (784)
Q Consensus 483 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~ 553 (784)
.+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|.++++...+...-.++ ...+.
T Consensus 188 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 267 (338)
T 3ro2_A 188 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 267 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 555555555555555555555543110 011 124555555666666666666666655432111111 34566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 554 CMVDILGRAGQLEKALEFIKGLA----VEPG----PAVWGALLGACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 554 ~lv~~l~r~g~~~eA~~~~~~m~----~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
.+...|...|++++|.+.+++.- -.++ ..+|..+...+...|+++.|...+++++++.++
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 268 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 66677777777777777766541 0111 336777888888899999999999998887664
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-09 Score=112.00 Aligned_cols=210 Identities=11% Similarity=0.014 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHcCCCCchhhHhHHHHHHH-------hcCCH-------HHHHHHHhhcCC---C-CHHHHHHHHHHHHH
Q 044131 429 SLGKWVHELVKSRNFESNIYVSTALIDMYA-------KCGNI-------VEARELFDLMSH---K-SEVTWNTMISGYGL 490 (784)
Q Consensus 429 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~-------k~g~~-------~~A~~~f~~~~~---~-~~~~~~~li~~~~~ 490 (784)
+.|..+++++++.. +.++.+|..++..+. +.|++ ++|..+|++... | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888888763 567778888887776 45886 999999997653 3 56799999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHH-hcCCHH
Q 044131 491 HGHGLEALQLFSEMLHSGIRPSG-V-TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILG-RAGQLE 566 (784)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~~pd~-~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~-r~g~~~ 566 (784)
.|++++|.++|++..+ +.|+. . .|..+...+...|++++|..+|++..+ ..|+ ...|...+.... ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 56653 3 788889999999999999999999974 3444 444544433322 369999
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCC-CcchHHHHHHHHHhcCChHHHHHHHHH
Q 044131 567 KALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFEL---DPE-NVGYHVLLSNIYSAERDYLQAATVRQV 640 (784)
Q Consensus 567 eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l---~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~ 640 (784)
+|.+++++.- ..| ++..|..++..+...|+.+.|..+++++++. .|+ ....+..+++.+...|++++|..+.+.
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998862 233 6779999999999999999999999999995 554 566888999999999999999999888
Q ss_pred HHhC
Q 044131 641 VKKR 644 (784)
Q Consensus 641 m~~~ 644 (784)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7763
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.16 E-value=8.3e-10 Score=104.26 Aligned_cols=158 Identities=13% Similarity=-0.058 Sum_probs=93.1
Q ss_pred hHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044131 449 VSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSH 525 (784)
Q Consensus 449 ~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 525 (784)
.+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~------------- 75 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDN------------- 75 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC-------------
Confidence 344455555555555555555555542 234455555555555555555555555554431 222
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044131 526 AGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACMIHKDTNLARVA 603 (784)
Q Consensus 526 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~ 603 (784)
...+..+...+...|++++|.+.++++. .+.+..+|..+...+...|+++.|...
T Consensus 76 -----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 76 -----------------------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp -----------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 3344444445555555555555554431 223455666777777777777777777
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 604 SEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 604 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++++++..|+++..+..++.+|...|++++|.+.++...+
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777766544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=8.4e-11 Score=121.78 Aligned_cols=95 Identities=15% Similarity=0.145 Sum_probs=54.8
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMSH-----------KSEVTWNTMISGYGLHGHGLEALQLFSEMLHS------GI 509 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 509 (784)
..++..+...|...|++++|...|++..+ .....|..+...|...|++++|+++|+++.+. +-
T Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 190 (311)
T 3nf1_A 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD 190 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34455555566666666666665554431 12335666666666677777777777666553 11
Q ss_pred CCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 044131 510 RPS-GVTFLSVLYACSHAGLVREGDEIFQSMIH 541 (784)
Q Consensus 510 ~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 541 (784)
.|+ ..++..+...+...|++++|.++|+.+.+
T Consensus 191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222 23455566666677777777777766653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-09 Score=116.76 Aligned_cols=222 Identities=9% Similarity=0.006 Sum_probs=138.2
Q ss_pred HHhhhCchHHHHHHHHHHHHc----CCCC-chhhHhHHHHHHHhcCCHHHHHHHHhhcCC-----C-----CHHHHHHHH
Q 044131 421 ACAQLGAISLGKWVHELVKSR----NFES-NIYVSTALIDMYAKCGNIVEARELFDLMSH-----K-----SEVTWNTMI 485 (784)
Q Consensus 421 a~~~~~~~~~a~~i~~~~~~~----g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~-----~~~~~~~li 485 (784)
.+...|+++.|...+..+.+. +-++ ...++..+...|...|++++|...|++..+ + ...+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 445566666666666666543 1111 234566666677777777777666665431 1 134667777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHccCCHHHHHHHHHHhHHhc---CCCCC-cchHHHHH
Q 044131 486 SGYGLHGHGLEALQLFSEMLHSGI-RPSG----VTFLSVLYACSHAGLVREGDEIFQSMIHDH---GFKPL-AEHYACMV 556 (784)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g~-~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~lv 556 (784)
..|...|++++|++.|++..+... .+|. .++..+...+...|++++|.++|++..+-. +..|. ...+..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 777777788887777777664211 1111 356667777777888888888777765421 22132 45677777
Q ss_pred HHHHhcCCHHHHHHHHHhCC-C-----CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 557 DILGRAGQLEKALEFIKGLA-V-----EPG-PAVWGALLGACMIHKD---TNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m~-~-----~p~-~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
..|.+.|++++|.+.+++.- + .|. ...+..+...+...|+ .+.|...+++. ...|.....+..|+.+|.
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHH
Confidence 77888888888877776541 1 122 1234556666677777 66666666665 334455557778888888
Q ss_pred hcCChHHHHHHHHHHHh
Q 044131 627 AERDYLQAATVRQVVKK 643 (784)
Q Consensus 627 ~~g~~~~a~~~~~~m~~ 643 (784)
..|++++|.+.++...+
T Consensus 351 ~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 88888888888776543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-09 Score=117.50 Aligned_cols=229 Identities=7% Similarity=-0.034 Sum_probs=169.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHhhhCchHHHHHHHHHHHHcC--C----CCchhhHh
Q 044131 383 MIAGYTQNGLTEEAISLFQEMQASK-VAPN----PVTVSSILSACAQLGAISLGKWVHELVKSRN--F----ESNIYVST 451 (784)
Q Consensus 383 li~~~~~~g~~~~A~~l~~~m~~~g-~~pd----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~----~~~~~~~~ 451 (784)
....+...|++++|+..|++....- -.+| ..++..+...+...|+++.|...+..+.+.- . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4445667788888888888776531 0122 3456666777777888888888777776431 1 11245677
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 044131 452 ALIDMYAKCGNIVEARELFDLMSH-----KS----EVTWNTMISGYGLHGHGLEALQLFSEMLHS----GI-RPSGVTFL 517 (784)
Q Consensus 452 ~Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~pd~~t~~ 517 (784)
.+...|...|++++|...|++..+ ++ ..+|+.+...|...|++++|++.|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788889999999999988887652 22 247888999999999999999999998872 33 33355788
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCCC---cchHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCHH-HHHHHHHH
Q 044131 518 SVLYACSHAGLVREGDEIFQSMIHDHGFKPL---AEHYACMVDILGRAGQ---LEKALEFIKGLAVEPGPA-VWGALLGA 590 (784)
Q Consensus 518 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~lv~~l~r~g~---~~eA~~~~~~m~~~p~~~-~~~~ll~a 590 (784)
.+...+...|++++|.++++...+...-.++ ...+..+..++...|+ +++|..++++.+..|+.. ++..|...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8889999999999999999987643211112 3346778889999999 999999999987555443 77788889
Q ss_pred HHhcCCHHHHHHHHHHHhcCC
Q 044131 591 CMIHKDTNLARVASEKLFELD 611 (784)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~l~ 611 (784)
+...|+.+.|...+++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=7.7e-11 Score=122.06 Aligned_cols=239 Identities=15% Similarity=0.135 Sum_probs=156.5
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHH
Q 044131 377 LASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDM 456 (784)
Q Consensus 377 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 456 (784)
..+|..+...|...|++++|+.+|+++.... ........+....++..+...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~~~~~~~~~~~~~la~~ 78 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDL----------------------------EKTSGHDHPDVATMLNILALV 78 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------------HHHHCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------------------------HHHcCCCCHHHHHHHHHHHHH
Confidence 3467777778888888888888887776420 000000111223445556666
Q ss_pred HHhcCCHHHHHHHHhhcCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HHHHHH
Q 044131 457 YAKCGNIVEARELFDLMSH-----------KSEVTWNTMISGYGLHGHGLEALQLFSEMLHS------GIRPS-GVTFLS 518 (784)
Q Consensus 457 y~k~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~pd-~~t~~~ 518 (784)
|...|++++|...|++... ....+|..+...|...|++++|+..|+++.+. +-.|+ ...+..
T Consensus 79 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 6666666666666655431 23457888999999999999999999998874 22233 346778
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhc-----CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC--
Q 044131 519 VLYACSHAGLVREGDEIFQSMIHDH-----GFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA----------VEPG-- 580 (784)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~----------~~p~-- 580 (784)
+...+...|++++|.++|+.+.+.. +..|. ...+..+...|.+.|++++|.+.++++. ..|.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 8889999999999999999987542 11232 5678889999999999999999987652 1111
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 581 -----PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 581 -----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...+..+...+...+.+..+...++++.+..|..+..+..++.+|...|++++|.+.++...+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112233333444556667777788888888899999999999999999999999999887643
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.8e-10 Score=108.73 Aligned_cols=150 Identities=9% Similarity=-0.030 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHH
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVD 557 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~ 557 (784)
..|......|...|++++|++.|++..+...+++...+..+..++...|++++|.+.|+...+ +.|+ ...|..+..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHH
Confidence 344444444444555555555555544432223444444444445555555555555554442 2333 334444455
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--CcchHHHHHHHHH
Q 044131 558 ILGRAGQLEKALEFIKGL-AVEP-GP-------AVWGALLGACMIHKDTNLARVASEKLFELDPE--NVGYHVLLSNIYS 626 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m-~~~p-~~-------~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y~ 626 (784)
.|.+.|++++|.+.+++. ...| +. .+|..+...+...|+++.|...++++++++|+ ++..+..++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 555555555555554443 1122 22 23444445555555555555555555555555 5555555555555
Q ss_pred hcCCh
Q 044131 627 AERDY 631 (784)
Q Consensus 627 ~~g~~ 631 (784)
..|+.
T Consensus 165 ~~~~~ 169 (228)
T 4i17_A 165 NNGAD 169 (228)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-09 Score=106.74 Aligned_cols=206 Identities=9% Similarity=0.043 Sum_probs=139.8
Q ss_pred CCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHH
Q 044131 410 PNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMIS 486 (784)
Q Consensus 410 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~ 486 (784)
.|+..+......+...|++++|...+..+++..-+++...+..+...|.+.|++++|...|++.. ..+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 35566777777777888888888888888776633566666667778888888888888887765 234557777778
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC---cchHHHH
Q 044131 487 GYGLHGHGLEALQLFSEMLHSGIRPS-G-------VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL---AEHYACM 555 (784)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~g~~pd-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 555 (784)
.|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|.+.|+... .+.|+ ...|..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 888888888888888887774 343 3 346666667777788888888888776 34554 4556666
Q ss_pred HHHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 044131 556 VDILGRAGQL--EKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSA 627 (784)
Q Consensus 556 v~~l~r~g~~--~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 627 (784)
..+|...|+. ++|..+. ..+...+..+. ....++++.|...++++++++|+++.....|+.+...
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 6666555443 2222111 22233333332 2345567999999999999999999888888777543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.7e-10 Score=121.47 Aligned_cols=177 Identities=12% Similarity=0.012 Sum_probs=155.2
Q ss_pred HHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 044131 463 IVEARELFDLMS---HKSEVTWNTMISGYGLHGHG-LEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQS 538 (784)
Q Consensus 463 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 538 (784)
+++|...++... ..+...|..+...|...|++ ++|++.|++..+.. +-+...+..+..++...|++++|.+.|+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 556666665543 34788999999999999999 99999999999853 33477899999999999999999999999
Q ss_pred hHHhcCCCCCcchHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCHHH
Q 044131 539 MIHDHGFKPLAEHYACMVDILGRA---------GQLEKALEFIKGL-AVEP-GPAVWGALLGACMIH--------KDTNL 599 (784)
Q Consensus 539 m~~~~~~~p~~~~~~~lv~~l~r~---------g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~--------g~~~~ 599 (784)
.. .+.|+...+..+..+|.+. |++++|.+.+++. ...| +...|..+..++... |++++
T Consensus 163 al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 AL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 87 5578888899999999999 9999999999886 3445 577999999999988 99999
Q ss_pred HHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 600 ARVASEKLFELDP---ENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 600 a~~~~~~~~~l~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
|...++++++++| +++..|..++.+|...|++++|.+.++...+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999999999999988765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-09 Score=100.98 Aligned_cols=171 Identities=16% Similarity=-0.002 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHH
Q 044131 412 PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGY 488 (784)
Q Consensus 412 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~ 488 (784)
...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|+++. ..+...|..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456667778889999999999999887654 4567888999999999999999999999875 35678899999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 044131 489 GLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKA 568 (784)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA 568 (784)
...|++++|++.|+++.+.. +.+...+..+...+...|++++|.++|+...+. .
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~---------------------- 140 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---R---------------------- 140 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C----------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---C----------------------
Confidence 99999999999999988752 345566666667777777777777777766532 1
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchH
Q 044131 569 LEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYH 618 (784)
Q Consensus 569 ~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 618 (784)
+.+..+|..+...+...|+.+.|...++++++++|+++...
T Consensus 141 ---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 141 ---------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181 (186)
T ss_dssp ---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGGG
T ss_pred ---------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhhH
Confidence 22345666777777777788888888888887777765443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.11 E-value=3.8e-08 Score=104.93 Aligned_cols=259 Identities=12% Similarity=0.005 Sum_probs=163.5
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhhhCchHHHHHHHHHHHHc----CCCC-chhhHhHHHH
Q 044131 385 AGYTQNGLTEEAISLFQEMQASKVAPNPV----TVSSILSACAQLGAISLGKWVHELVKSR----NFES-NIYVSTALID 455 (784)
Q Consensus 385 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~~-~~~~~~~Li~ 455 (784)
..+...|++++|...+++........+.. .+..+...+...|+++.|...+....+. +... .......+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445666666666666655543222221 2333444555666666666666665532 1000 1223455666
Q ss_pred HHHhcCCHHHHHHHHhhcCC----------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHH
Q 044131 456 MYAKCGNIVEARELFDLMSH----------K-SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIR--P--SGVTFLSVL 520 (784)
Q Consensus 456 ~y~k~g~~~~A~~~f~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--d~~t~~~ll 520 (784)
.|...|++++|...|++... + ....+..+...|...|++++|...+++..+.... | ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 77778888888777765531 1 1235566777788888888888888887763221 1 124566777
Q ss_pred HHHHccCCHHHHHHHHHHhHHhcCCCCCcchHH-----HHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHH
Q 044131 521 YACSHAGLVREGDEIFQSMIHDHGFKPLAEHYA-----CMVDILGRAGQLEKALEFIKGLA-VEPG-----PAVWGALLG 589 (784)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~lv~~l~r~g~~~eA~~~~~~m~-~~p~-----~~~~~~ll~ 589 (784)
..+...|++++|..+++.......-......+. ..+..+...|++++|...+++.. ..|. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 778888899999888888764322111111222 23344778899999999988763 2221 335677778
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 590 ACMIHKDTNLARVASEKLFELDPEN------VGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 590 a~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++...|+.+.|...++++++..+.. ...+..++.+|...|++++|...++....
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888999999999998887654321 23677889999999999999988876543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-08 Score=109.74 Aligned_cols=221 Identities=13% Similarity=0.006 Sum_probs=143.9
Q ss_pred HHhhhCchHHHHHHHHHHHHcC--CC---CchhhHhHHHHHHHhcCCHHHHHHHHhhcCC-----C-----CHHHHHHHH
Q 044131 421 ACAQLGAISLGKWVHELVKSRN--FE---SNIYVSTALIDMYAKCGNIVEARELFDLMSH-----K-----SEVTWNTMI 485 (784)
Q Consensus 421 a~~~~~~~~~a~~i~~~~~~~g--~~---~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~-----~~~~~~~li 485 (784)
.+...|+++.|...+..+.+.. .. ....++..+...|...|+++.|...+++..+ + ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 3456677777777777776431 11 1244566777778888887777777665431 1 134677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC--CCCC-cchHHHHHH
Q 044131 486 SGYGLHGHGLEALQLFSEMLHS----GIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHG--FKPL-AEHYACMVD 557 (784)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~-~~~~~~lv~ 557 (784)
..|...|++++|++.|++..+. +-.+ ...++..+...+...|++++|.++|++..+... ..|. ...+..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 8888888888888888877652 1111 123566777788888888888888887764111 1222 556777788
Q ss_pred HHHhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 044131 558 ILGRAGQLEKALEFIKGL----AV--EPG-PAVWGALLGACMIHKD---TNLARVASEKLFELDPENVGYHVLLSNIYSA 627 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m----~~--~p~-~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 627 (784)
.+.+.|++++|.+.+++. +- .|. ...+..+...+...++ ++.|...+++. ...|+....+..++.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 888888888888888764 11 222 2245555556666777 66666666652 2334445567788999999
Q ss_pred cCChHHHHHHHHHHH
Q 044131 628 ERDYLQAATVRQVVK 642 (784)
Q Consensus 628 ~g~~~~a~~~~~~m~ 642 (784)
.|++++|.+.++...
T Consensus 349 ~g~~~~A~~~~~~al 363 (378)
T 3q15_A 349 SCHFEQAAAFYRKVL 363 (378)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999888877653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.8e-08 Score=103.83 Aligned_cols=227 Identities=8% Similarity=0.031 Sum_probs=169.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhhhCchHHHHHHHHHHHHcC--C---C-CchhhHh
Q 044131 383 MIAGYTQNGLTEEAISLFQEMQASKV-APN----PVTVSSILSACAQLGAISLGKWVHELVKSRN--F---E-SNIYVST 451 (784)
Q Consensus 383 li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~---~-~~~~~~~ 451 (784)
....+...|++++|+..|++....-. .+| ..++..+...+...|+++.|...+..+.+.. . . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456678888888888888765321 122 3456667777888888888888887776431 1 1 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 044131 452 ALIDMYAKCGNIVEARELFDLMSH-----KS----EVTWNTMISGYGLHGHGLEALQLFSEMLH-----SGIRPSGVTFL 517 (784)
Q Consensus 452 ~Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~t~~ 517 (784)
.+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|++.|++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 888899999999999988877642 22 34788888999999999999999999887 32 23356788
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCCC---cchHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCHH-HHHHHHHH
Q 044131 518 SVLYACSHAGLVREGDEIFQSMIHDHGFKPL---AEHYACMVDILGRAGQ---LEKALEFIKGLAVEPGPA-VWGALLGA 590 (784)
Q Consensus 518 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~lv~~l~r~g~---~~eA~~~~~~m~~~p~~~-~~~~ll~a 590 (784)
.+...+...|+.++|..++++..+...-.++ ...+..+...+...|+ +++|..++++....|+.. .+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 8889999999999999999998765433222 3456667777888888 999999999876555433 66778889
Q ss_pred HHhcCCHHHHHHHHHHHhcC
Q 044131 591 CMIHKDTNLARVASEKLFEL 610 (784)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~l 610 (784)
+...|+.+.|...+++++++
T Consensus 346 y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999988764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.1e-09 Score=122.31 Aligned_cols=163 Identities=17% Similarity=0.195 Sum_probs=134.2
Q ss_pred CchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 044131 445 SNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPS-GVTFLSVL 520 (784)
Q Consensus 445 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll 520 (784)
.+...++.|...|.+.|++++|.+.|++.. ..+..+|+.+..+|.+.|++++|++.|++.++. .|+ ...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 346678888888888888888888888765 245778888999999999999999999988884 554 56788888
Q ss_pred HHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 044131 521 YACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDT 597 (784)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~ 597 (784)
.++...|++++|.+.|++.++ +.|+ ...|..+..+|.+.|++++|++.+++. .+.|+ ...|..|..++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 899999999999999998874 3565 678888999999999999999998876 35664 66889999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 044131 598 NLARVASEKLFELDP 612 (784)
Q Consensus 598 ~~a~~~~~~~~~l~p 612 (784)
+.|++.+++++++.|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999998887654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=2.8e-08 Score=102.15 Aligned_cols=220 Identities=12% Similarity=-0.020 Sum_probs=123.3
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhhhCchHHHHHHH
Q 044131 361 EMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQAS----KVAPN-PVTVSSILSACAQLGAISLGKWVH 435 (784)
Q Consensus 361 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~ 435 (784)
++++|...|+.. ...|...|++++|++.|.+.... |-.++ ..++..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366666665543 55666677777777777665432 11111 223444444444444444444444
Q ss_pred HHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCC-CC-
Q 044131 436 ELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLH-GHGLEALQLFSEMLHSGIR-PS- 512 (784)
Q Consensus 436 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-pd- 512 (784)
..+++. +...|+...+ ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 433321 1111111111 23566777777775 8888888888877652100 01
Q ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCc-----chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-
Q 044131 513 ---GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLA-----EHYACMVDILGRAGQLEKALEFIKGL-AVEPGPA- 582 (784)
Q Consensus 513 ---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~- 582 (784)
..++..+...+...|++++|..+|+...+...-.+.. ..|..+..++...|++++|...+++. .+.|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 2456777778888888888888888776432111111 14566777777888888888888775 3444322
Q ss_pred -----HHHHHHHHHH--hcCCHHHHHHHHHHHhcCCCCCcch
Q 044131 583 -----VWGALLGACM--IHKDTNLARVASEKLFELDPENVGY 617 (784)
Q Consensus 583 -----~~~~ll~a~~--~~g~~~~a~~~~~~~~~l~p~~~~~ 617 (784)
.+..|+.++. ..++++.|...++++.+++|.+...
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 3444555554 3466788888888888887765433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.92 E-value=5.3e-09 Score=106.23 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc-----CCCC
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHS------GIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDH-----GFKP 547 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p 547 (784)
+|..+...|...|++++|++.|++..+. .-.| ...++..+...+...|++++|.++|++..+.. +-.|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444444444444444444444444432 0011 12334444445555555555555555544320 0011
Q ss_pred C-cchHHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHhc
Q 044131 548 L-AEHYACMVDILGRAGQLEKALEFIKGLA----------VEPG-PAVWGALLGACMIHKD------TNLARVASEKLFE 609 (784)
Q Consensus 548 ~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~----------~~p~-~~~~~~ll~a~~~~g~------~~~a~~~~~~~~~ 609 (784)
. ...+..+..+|.+.|++++|.+++++.- ..|. ...|..+.......+. +..+...++.+..
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 1 3344455555555555555555554330 1111 1133333333322222 2223333333333
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 610 LDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 610 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
..|..+..+..|+.+|...|++++|.+.++...+
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455556777788888888888888877766543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.3e-08 Score=98.80 Aligned_cols=204 Identities=14% Similarity=0.027 Sum_probs=131.9
Q ss_pred chhhHhHHHHHHHhcCCHHHHHHHHhhcCC--C-C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-HHHHH
Q 044131 446 NIYVSTALIDMYAKCGNIVEARELFDLMSH--K-S---EVTWNTMISGYGLHGHGLEALQLFSEMLHSGI-RPS-GVTFL 517 (784)
Q Consensus 446 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd-~~t~~ 517 (784)
+...+-.+...+.+.|++++|...|+.+.+ | + ...|..+..+|.+.|++++|+..|++..+... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344555566667777777777777776652 2 2 45666677777777777777777777776421 112 23455
Q ss_pred HHHHHHHc--------cCCHHHHHHHHHHhHHhcCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 044131 518 SVLYACSH--------AGLVREGDEIFQSMIHDHGFKPLA-EHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALL 588 (784)
Q Consensus 518 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll 588 (784)
.+..++.. .|++++|...|+..++.+ |+. .....+..+....+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55556666 677777777777766542 332 1221111111000000 11246677
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCccCCcccEE
Q 044131 589 GACMIHKDTNLARVASEKLFELDPENV---GYHVLLSNIYSAE----------RDYLQAATVRQVVKKRKLAKAPGCTLI 655 (784)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~~~~k~~g~s~i 655 (784)
..+...|+++.|...++++++..|+++ ..+..++.+|... |++++|...++...+..
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~---------- 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF---------- 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----------
Confidence 889999999999999999999999854 4788999999977 99999999998876522
Q ss_pred EECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 044131 656 EVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMRE 690 (784)
Q Consensus 656 ~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 690 (784)
..+|...+....+.++...+.+
T Consensus 226 -------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 -------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCChHHHHHHHHHHHHHHHHHH
Confidence 2356666777777777666654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.90 E-value=4.4e-07 Score=96.58 Aligned_cols=192 Identities=9% Similarity=0.005 Sum_probs=95.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC--C--CHH
Q 044131 349 LTALSTVYSRLNEMEAARKLFDESSE-------K----SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVA--P--NPV 413 (784)
Q Consensus 349 ~~~Li~~y~~~g~~~~A~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--d~~ 413 (784)
...+...|...|++++|...+++... + ....+..+...|...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 34455556666666666666554321 1 1124445555666667777776666665542211 1 123
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCc-hhhHh-----HHHHHHHhcCCHHHHHHHHhhcCCCC-------HHH
Q 044131 414 TVSSILSACAQLGAISLGKWVHELVKSRNFESN-IYVST-----ALIDMYAKCGNIVEARELFDLMSHKS-------EVT 480 (784)
Q Consensus 414 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~-----~Li~~y~k~g~~~~A~~~f~~~~~~~-------~~~ 480 (784)
++..+...+...|++++|...++...+..-.++ ...+. .++..+...|++++|...++....++ ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 444555555666666666666666554311111 01111 22334556666666666666654321 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhH
Q 044131 481 WNTMISGYGLHGHGLEALQLFSEMLHS----GIRPSGV-TFLSVLYACSHAGLVREGDEIFQSMI 540 (784)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 540 (784)
+..+...+...|++++|...+++.... |..++.. ++..+..++...|+.++|...++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 445555566666666666666655431 1111121 33334444555555555555555543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-08 Score=102.25 Aligned_cols=186 Identities=9% Similarity=-0.019 Sum_probs=128.1
Q ss_pred HHHhcCCHHHHHHHHhhcCC-------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHH
Q 044131 456 MYAKCGNIVEARELFDLMSH-------K--SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGI---RPS--GVTFLSVLY 521 (784)
Q Consensus 456 ~y~k~g~~~~A~~~f~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~pd--~~t~~~ll~ 521 (784)
.|...|++++|...|.+... + ...+|+.+...|...|++++|+..|++..+... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666654431 1 134777888888888888888888887765211 111 346788888
Q ss_pred HHHcc-CCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC---H-----HHHHHH
Q 044131 522 ACSHA-GLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILGRAGQLEKALEFIKGLA-VEPG---P-----AVWGAL 587 (784)
Q Consensus 522 a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~---~-----~~~~~l 587 (784)
.+... |++++|..+|++..+.+.-..+ ...+..+...|.+.|++++|.+.+++.. ..|+ . ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 99996 9999999999998754211111 3568889999999999999999998762 2332 1 157777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCcch-----HHHHHHHHH--hcCChHHHHHHHHHH
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPENVGY-----HVLLSNIYS--AERDYLQAATVRQVV 641 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~~~~~-----~~~l~~~y~--~~g~~~~a~~~~~~m 641 (784)
..++...|+++.|...++++++++|+.+.. +..|...|. ..+++++|.+.++.+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 888899999999999999999999986653 334555664 467788888877543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.88 E-value=4.9e-07 Score=91.42 Aligned_cols=173 Identities=10% Similarity=0.008 Sum_probs=106.9
Q ss_pred HHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 044131 466 ARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIH 541 (784)
Q Consensus 466 A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 541 (784)
|...|++.. .++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455555443 2444555566666777777777777777765544322 334455566677777777777777777753
Q ss_pred hcCCCC-----CcchHHHHHHH--HHh--cCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC-
Q 044131 542 DHGFKP-----LAEHYACMVDI--LGR--AGQLEKALEFIKGLA-VEPGPAVWGALLGACMIHKDTNLARVASEKLFEL- 610 (784)
Q Consensus 542 ~~~~~p-----~~~~~~~lv~~--l~r--~g~~~eA~~~~~~m~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l- 610 (784)
. .| +..+...+..+ ... .++.++|..+|+++. ..|+...-..|+.++...|++++|+..++.+.++
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2 44 23333333333 222 337777777777763 3344223333444667778888888888877765
Q ss_pred ---------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 611 ---------DPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 611 ---------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+|+++.++..++.++...|+ +|.+++..+++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 47777777777777777776 77777777776
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.82 E-value=9.6e-08 Score=96.75 Aligned_cols=164 Identities=11% Similarity=0.042 Sum_probs=99.6
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcCC----------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMSH----------K-SEVTWNTMISGYGLHGHGLEALQLFSEMLHS------GI 509 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 509 (784)
..++..+...|...|++++|...|++... | ...+|..+...|...|++++|+..|+++.+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34555566666666666666666655431 1 2346777777777888888888888777763 11
Q ss_pred CCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhc------CCCCC-cchHHHHHHHHHhcC------CHHHHHHHHHhC
Q 044131 510 RPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDH------GFKPL-AEHYACMVDILGRAG------QLEKALEFIKGL 575 (784)
Q Consensus 510 ~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~~~~lv~~l~r~g------~~~eA~~~~~~m 575 (784)
.|+ ..++..+...+...|++++|.++|+...+.. ...|. ...|..+...+...+ .+.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 332 3467777788888888888888888876431 12233 333444443333322 345555555555
Q ss_pred C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 044131 576 A-VEPG-PAVWGALLGACMIHKDTNLARVASEKLFEL 610 (784)
Q Consensus 576 ~-~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l 610 (784)
. ..|+ ..+|..|..++...|+++.|...+++++++
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 2233 447888999999999999999999998875
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.81 E-value=3e-08 Score=114.69 Aligned_cols=168 Identities=10% Similarity=-0.065 Sum_probs=91.3
Q ss_pred HhcCCHHHHHHHHhhcC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044131 458 AKCGNIVEARELFDLMS-----------HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHA 526 (784)
Q Consensus 458 ~k~g~~~~A~~~f~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 526 (784)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 34455555555555443 2334455555555666666666666666655531 22334555555556666
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 044131 527 GLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVA 603 (784)
Q Consensus 527 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~ 603 (784)
|++++|.+.|++..+. .|+ ...|..+..+|.+.|++++ ++.+++. ...| +...|..+..++...|++++|...
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666655532 343 4455556666666666666 5555554 2333 344566666666666666666666
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 604 SEKLFELDPENVGYHVLLSNIYSAERD 630 (784)
Q Consensus 604 ~~~~~~l~p~~~~~~~~l~~~y~~~g~ 630 (784)
++++++++|+++..+..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 666666666666666666666655443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.9e-09 Score=97.33 Aligned_cols=137 Identities=9% Similarity=-0.033 Sum_probs=91.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHH
Q 044131 489 GLHGHGLEALQLFSEMLHSGIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLE 566 (784)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~ 566 (784)
...|+.++|++.+++.... .|+ ...+..+...|...|++++|.+.|++.++. .|+ ...|..+..+|.+.|+++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchH
Confidence 3445555666655555432 222 223445555666666666666666666532 343 556666677777777777
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 567 KALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARV-ASEKLFELDPENVGYHVLLSNIYSAERD 630 (784)
Q Consensus 567 eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~-~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 630 (784)
+|...+++. .+.| ++.+|..+...+...|+.++|.. .++++++++|+++..|.+.+.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777664 3455 46688888888888898876555 4689999999999999999999988875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-07 Score=83.71 Aligned_cols=128 Identities=23% Similarity=0.262 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDIL 559 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l 559 (784)
.|..+...|...|++++|+.+|+++.+.. +.+..++..+...+...|++++|..+|+.+.+. .|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~------------ 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DP------------ 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CC------------
Confidence 45566666666777777777777766542 234445555555666666666666666665432 12
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 044131 560 GRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQ 639 (784)
Q Consensus 560 ~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 639 (784)
.+...|..+...+...|+++.|...++++++..|+++..+..++.+|...|++++|.+.++
T Consensus 67 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 67 -------------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -------------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 1233444444455555555555555555555555555555555555555555555555555
Q ss_pred HHH
Q 044131 640 VVK 642 (784)
Q Consensus 640 ~m~ 642 (784)
.+.
T Consensus 128 ~~~ 130 (136)
T 2fo7_A 128 KAL 130 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-07 Score=95.02 Aligned_cols=203 Identities=11% Similarity=0.038 Sum_probs=144.7
Q ss_pred CCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCc---hhhHhHHHHHHHhcCCHHHHHHHHhhcCC--C---C-HHH
Q 044131 410 PNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESN---IYVSTALIDMYAKCGNIVEARELFDLMSH--K---S-EVT 480 (784)
Q Consensus 410 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~---~-~~~ 480 (784)
.+...+......+...|++++|...+..+++.. +.+ ...+..+...|.+.|++++|...|++..+ | . ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356677777788889999999999999999864 333 56778889999999999999999998762 2 2 457
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchH
Q 044131 481 WNTMISGYGL--------HGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHY 552 (784)
Q Consensus 481 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 552 (784)
|..+..+|.. .|++++|+..|++..+. .|+.... ..+...+..+... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~-------------~~a~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELV-------------DDATQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTH-------------HHHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhH-------------HHHHHHHHHHHHH-----HHHHH
Confidence 7788888888 99999999999999984 4543211 1111111111110 01224
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHhcCCCCCcc-
Q 044131 553 ACMVDILGRAGQLEKALEFIKGLA-VEPG----PAVWGALLGACMIH----------KDTNLARVASEKLFELDPENVG- 616 (784)
Q Consensus 553 ~~lv~~l~r~g~~~eA~~~~~~m~-~~p~----~~~~~~ll~a~~~~----------g~~~~a~~~~~~~~~l~p~~~~- 616 (784)
..+...|.+.|++++|...+++.- ..|+ ...|..+..++... |+++.|...++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 567778888888888888887751 2232 34677777777755 8899999999999999999864
Q ss_pred --hHHHHHHHHHhcCChHH
Q 044131 617 --YHVLLSNIYSAERDYLQ 633 (784)
Q Consensus 617 --~~~~l~~~y~~~g~~~~ 633 (784)
.+..+..++...|++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 44556666655555444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=8.5e-08 Score=98.16 Aligned_cols=173 Identities=11% Similarity=-0.040 Sum_probs=136.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 044131 463 IVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIH 541 (784)
Q Consensus 463 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 541 (784)
.+.....+......+...+..+...+.+.|++++|+..|++..+. .| +...+..+...+...|+.++|...++.+..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 334445555555455667777888888999999999999999884 45 456778888899999999999999998864
Q ss_pred hcCCCCCcchHHHH-HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC--cc
Q 044131 542 DHGFKPLAEHYACM-VDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPEN--VG 616 (784)
Q Consensus 542 ~~~~~p~~~~~~~l-v~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~--~~ 616 (784)
..|+....... .-.+.+.|+.++|.+.+++. ...| +...+..|..++...|+.+.|...++++++.+|++ +.
T Consensus 180 ---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 ---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp ---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred ---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 35654333222 23366778888888888775 2345 57799999999999999999999999999999998 88
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHH
Q 044131 617 YHVLLSNIYSAERDYLQAATVRQV 640 (784)
Q Consensus 617 ~~~~l~~~y~~~g~~~~a~~~~~~ 640 (784)
.+..|+.+|...|+.++|...++.
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHH
Confidence 999999999999999998877654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.78 E-value=2.6e-07 Score=90.74 Aligned_cols=180 Identities=12% Similarity=0.024 Sum_probs=114.7
Q ss_pred hhHhHHHHHHHhcCCHHHHHHHHhhcCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHH
Q 044131 448 YVSTALIDMYAKCGNIVEARELFDLMSH--KS----EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGV----TFL 517 (784)
Q Consensus 448 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~ 517 (784)
..+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|++..+. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444556667777888888888877652 32 246677777777888888888888887764 33321 233
Q ss_pred HHHHHHHc------------------cCCHHHHHHHHHHhHHhcCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 044131 518 SVLYACSH------------------AGLVREGDEIFQSMIHDHGFKPLAE-HYACMVDILGRAGQLEKALEFIKGLAVE 578 (784)
Q Consensus 518 ~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~lv~~l~r~g~~~eA~~~~~~m~~~ 578 (784)
.+..++.. .|+.++|...|+.+++. .|+.. .+.... +.+.+.+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~----~l~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATK----RLVFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHH----HHHHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHH----HHHHHHHHH---------
Confidence 33333332 34556666666665532 23321 111111 000000000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 044131 579 PGPAVWGALLGACMIHKDTNLARVASEKLFELDPENV---GYHVLLSNIYSAERDYLQAATVRQVVKKRKLA 647 (784)
Q Consensus 579 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 647 (784)
......+...+...|+++.|...++++++..|+++ ..+..++.+|...|++++|.+.++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00123455677889999999999999999999986 56889999999999999999999998876654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-07 Score=83.22 Aligned_cols=95 Identities=21% Similarity=0.225 Sum_probs=79.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAE 628 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 628 (784)
.|..+...+.+.|++++|.++++++. .+.+..+|..+...+...|+++.|...++++++..|+++..+..++.+|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 45566777778888888888877652 2345678888888999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 044131 629 RDYLQAATVRQVVKKRK 645 (784)
Q Consensus 629 g~~~~a~~~~~~m~~~~ 645 (784)
|++++|.+.++.+.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999998876643
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.1e-07 Score=107.62 Aligned_cols=193 Identities=12% Similarity=0.042 Sum_probs=148.8
Q ss_pred hhhCchHHHHHHHHHHH--------HcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHc
Q 044131 423 AQLGAISLGKWVHELVK--------SRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLH 491 (784)
Q Consensus 423 ~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~ 491 (784)
...|++++|.+.++.+. +. .+.+...+..+...|.+.|++++|...|++.. ..+...|..+..+|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56677777777777776 32 24466778888888999999999999998876 35778999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHH
Q 044131 492 GHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKAL 569 (784)
Q Consensus 492 g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~ 569 (784)
|++++|++.|++..+. .| +...+..+..++...|++++ .+.|++..+. .|+ ...|..+..+|.+.|++++|.
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999984 45 55678888899999999999 9999998753 565 678889999999999999999
Q ss_pred HHHHhCC-CCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHhcCCCCCcchHHHHH
Q 044131 570 EFIKGLA-VEPG-PAVWGALLGACMIHKD-----TNLARVASEKLFELDPENVGYHVLLS 622 (784)
Q Consensus 570 ~~~~~m~-~~p~-~~~~~~ll~a~~~~g~-----~~~a~~~~~~~~~l~p~~~~~~~~l~ 622 (784)
+.+++.. ..|+ ...|..+..++...++ .+...++.+.+.++.++++..+.+-.
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~ 614 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRA 614 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHHH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 9999984 7786 4578788777766555 45555666666667666666554433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-06 Score=88.68 Aligned_cols=240 Identities=9% Similarity=-0.029 Sum_probs=158.8
Q ss_pred HhcCCHHHHHHHHhhcCCCCh-hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHH
Q 044131 357 SRLNEMEAARKLFDESSEKSL-ASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVH 435 (784)
Q Consensus 357 ~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 435 (784)
.-.|.+..+..-...+...+. ..---+..+|...|++... ..-.|....+..+. .+...+ +...+
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~----a~~~l 89 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK----NIEEL 89 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT----CCHHH
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc----HHHHH
Confidence 345777777665555543322 2223344677777776632 11233332333222 222222 45566
Q ss_pred HHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 044131 436 ELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH-----KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIR 510 (784)
Q Consensus 436 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 510 (784)
+..+..+ .++......+...|...|++++|++++.+... .+...+-.++..|.+.|+.+.|.+.+++|.+ ..
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~ 166 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AI 166 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC
Confidence 6665554 34455556788889999999999999988732 3556777888899999999999999999987 46
Q ss_pred C-----CHHHHHHHHHH--HHccC--CHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-C---
Q 044131 511 P-----SGVTFLSVLYA--CSHAG--LVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-V--- 577 (784)
Q Consensus 511 p-----d~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~--- 577 (784)
| +..+...+..+ ....| ..++|..+|+++.+. .|+......+..++.+.|++++|++.++.+. .
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 7 36666666666 33334 899999999998754 3543333344447889999999999987642 1
Q ss_pred -------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchH
Q 044131 578 -------EP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYH 618 (784)
Q Consensus 578 -------~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 618 (784)
.| |+.+...++......|+ .|.+..+++.+..|++|...
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 25 45566677766667787 88999999999999987544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.2e-08 Score=89.48 Aligned_cols=120 Identities=12% Similarity=-0.009 Sum_probs=100.5
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 044131 520 LYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKD 596 (784)
Q Consensus 520 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~ 596 (784)
...+...|++++|.+.++... ...|+ ...+-.+..+|.+.|++++|++.+++. .+.| ++.+|..+..++...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 344556788999999998775 44554 556677899999999999999999886 3556 57799999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH-HHHH
Q 044131 597 TNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVR-QVVK 642 (784)
Q Consensus 597 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~-~~m~ 642 (784)
++.|+..++++++++|+++..+..++.+|...|++++|.+.+ +...
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887754 5443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.69 E-value=6.7e-06 Score=90.60 Aligned_cols=369 Identities=12% Similarity=0.025 Sum_probs=210.1
Q ss_pred cCC-CchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-hHH
Q 044131 186 KNC-CFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGE-VER 263 (784)
Q Consensus 186 ~~g-~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~ 263 (784)
+.| +.+.|..+|+.+... -|+ ++.+.+.++|+..+.. .|++.+|...++.-.+.++ .+.
T Consensus 6 ~~~~~i~~aR~vyer~l~~---~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~ 66 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL---YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFK 66 (493)
T ss_dssp ------CCHHHHHHHHHHH---HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----C
T ss_pred HcCcchHHHHHHHHHHHHH---CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHH
Confidence 345 377888888887753 233 8888999999988874 4688888888887777663 344
Q ss_pred HHHHHhcCC------CCCeeeHHHHHHHHH----hCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHH
Q 044131 264 AELLFRDIV------RPDLISCNAMISGYT----CNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCI 333 (784)
Q Consensus 264 A~~~f~~~~------~~d~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 333 (784)
...+|+... ..+...|...+.-+. .+|+.+.+.++|++.+.. ++.. +..+-..|
T Consensus 67 i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~--~~~lw~~Y------------ 130 (493)
T 2uy1_A 67 LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGS--LSELWKDF------------ 130 (493)
T ss_dssp THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTT--HHHHHHHH------------
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhh--HHHHHHHH------------
Confidence 566666542 134556776666443 235677788888888763 2111 11111111
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHhCCC-------hhHHHHHHHH
Q 044131 334 HSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESS----EKSLASWNAMIAGYTQNGL-------TEEAISLFQE 402 (784)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~ 402 (784)
....+. .+..+...++.-+. +.+..|+.+++... ..+...|...+.--..++. .+.+..+|++
T Consensus 131 -~~fE~~---~~~~~~~~~~~~~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~ 204 (493)
T 2uy1_A 131 -ENFELE---LNKITGKKIVGDTL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNY 204 (493)
T ss_dssp -HHHHHH---HCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred -HHHHHH---hccccHHHHHHHHh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHH
Confidence 111110 01111111111111 12333333333221 1244467665554322211 2346678888
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHH-HHHHhhcC-------
Q 044131 403 MQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEA-RELFDLMS------- 474 (784)
Q Consensus 403 m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A-~~~f~~~~------- 474 (784)
+... .+-+...+...+.-+...|+.+.|+.+++.+++. +.+...+.. |+.....++. ..+.+...
T Consensus 205 al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~ 277 (493)
T 2uy1_A 205 ILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESA 277 (493)
T ss_dssp HHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC-------
T ss_pred HHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchh
Confidence 8764 3445667777777777888999999999999887 444433332 3322111111 11111110
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHhHHhcCCCCC
Q 044131 475 -----HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYA-CSHAGLVREGDEIFQSMIHDHGFKPL 548 (784)
Q Consensus 475 -----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~ 548 (784)
......|-..+.-+.+++..+.|..+|++. .. ..++...|...... +...++.+.|..+|+...+.++-.
T Consensus 278 ~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~-- 353 (493)
T 2uy1_A 278 EKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS-- 353 (493)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC--
T ss_pred hhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC--
Confidence 011245777777776778889999999988 32 12233444322211 122346889999999888765322
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
...+...++...+.|+.+.|..++++.. .....|...+.--..+|+.+.+..++++.+
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3456677888888899999999998873 356688888877777888888877777665
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-07 Score=88.09 Aligned_cols=155 Identities=10% Similarity=-0.061 Sum_probs=98.6
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044131 450 STALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHA 526 (784)
Q Consensus 450 ~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 526 (784)
...+...+.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++.... .|+.... .+...+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~-~~~~~~--- 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYK-SLIAKL--- 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHH-HHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHH-HHHHHH---
Confidence 34455566666677777666666652 34556666666666666666666666665442 2322211 111000
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 044131 527 GLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVAS 604 (784)
Q Consensus 527 g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~ 604 (784)
. +.+.+...+|...+++. ...| +...|..+..++...|++++|...+
T Consensus 83 ------------------------------~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 83 ------------------------------E-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp ------------------------------H-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------------------H-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 0 01111112344444443 2345 4678888899999999999999999
Q ss_pred HHHhcCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 605 EKLFELDPEN--VGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 605 ~~~~~l~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
+++++.+|+. +..+..++.+|...|+.++|...++..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 9999999875 558899999999999999998887654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.1e-07 Score=90.10 Aligned_cols=126 Identities=10% Similarity=0.017 Sum_probs=97.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhc
Q 044131 484 MISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRA 562 (784)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~ 562 (784)
+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|++.++. .|+ ...|..+...|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHH
Confidence 8888999999999999999998853 335667888889999999999999999998853 565 67888888888766
Q ss_pred CC--HHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 563 GQ--LEKALEFIKGLAVEPGPA--VWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 563 g~--~~eA~~~~~~m~~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
|. .+++...++... .|++. .|..+..++...|++++|+..+++++++.|++
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 54 455666666653 44443 45556667777899999999999999999974
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.5e-07 Score=104.81 Aligned_cols=159 Identities=13% Similarity=-0.009 Sum_probs=125.5
Q ss_pred cCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 044131 460 CGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIF 536 (784)
Q Consensus 460 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 536 (784)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.++|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998763 457899999999999999999999999999853 335678888999999999999999999
Q ss_pred HHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHhcC
Q 044131 537 QSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIH---KDTNLARVASEKLFEL 610 (784)
Q Consensus 537 ~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~l 610 (784)
++..+. .|+ ...+..+..+|.+.|++++|.+.+++. ...| +...|..+..++... |+.++|...++++++.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999854 454 678899999999999999999999886 3444 567899999999999 9999999999999999
Q ss_pred CCCCcchHHHHH
Q 044131 611 DPENVGYHVLLS 622 (784)
Q Consensus 611 ~p~~~~~~~~l~ 622 (784)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999999888876
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-06 Score=84.00 Aligned_cols=171 Identities=8% Similarity=-0.042 Sum_probs=125.0
Q ss_pred HHHHHhhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHhH
Q 044131 466 ARELFDLMS-HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAG----LVREGDEIFQSMI 540 (784)
Q Consensus 466 A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 540 (784)
|.+.|++.. ..+..++..+...|...+++++|++.|++..+.| +...+..+...+.. | +.++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 333443333 3456667777777777778888888888777765 45555566666666 5 7888888888775
Q ss_pred HhcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHh
Q 044131 541 HDHGFKPLAEHYACMVDILGR----AGQLEKALEFIKGLA-VEPG---PAVWGALLGACMI----HKDTNLARVASEKLF 608 (784)
Q Consensus 541 ~~~~~~p~~~~~~~lv~~l~r----~g~~~eA~~~~~~m~-~~p~---~~~~~~ll~a~~~----~g~~~~a~~~~~~~~ 608 (784)
+. -+...+..|..+|.. .+++++|.+++++.- ..|. +..+..|...+.. .+|.++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 42 245566677777766 778888988888764 4443 6788888888887 789999999999999
Q ss_pred cCCCCCcchHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCC
Q 044131 609 ELDPENVGYHVLLSNIYSAE-R-----DYLQAATVRQVVKKRK 645 (784)
Q Consensus 609 ~l~p~~~~~~~~l~~~y~~~-g-----~~~~a~~~~~~m~~~~ 645 (784)
++ |.++..+..|+.+|... | ++++|.+.++...+.|
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88 67778899999999764 3 8999999998877655
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-05 Score=87.36 Aligned_cols=202 Identities=12% Similarity=0.030 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHH-HHHHhhc
Q 044131 294 SSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAA-RKLFDES 372 (784)
Q Consensus 294 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A-~~~f~~~ 372 (784)
.+..+|++++... +.+...|...+.-+...|+++.|..++...++. +.+..++.. |+.....++. ..+.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHH
Confidence 3456666666542 333445555555556667777777777777766 334333332 2221111111 1111111
Q ss_pred C------------CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh-hCchHHHHHHHHHHH
Q 044131 373 S------------EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQ-LGAISLGKWVHELVK 439 (784)
Q Consensus 373 ~------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~-~~~~~~a~~i~~~~~ 439 (784)
. ......|-..+....+.+..+.|..+|.+. .. ...+...|......-.. .++.+.|+.+++...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 001234666666666667788888888877 22 11233333321111112 235788888888877
Q ss_pred HcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 440 SRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 440 ~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
+.- +.++..+...++...+.|+.+.|+.+|+.+. +....|...+.--..+|+.+.+..+++++.+
T Consensus 348 ~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 753 3344555667777778888888888888874 3566777777766677777777777776654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-07 Score=85.38 Aligned_cols=100 Identities=13% Similarity=0.015 Sum_probs=88.0
Q ss_pred CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHH
Q 044131 544 GFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVL 620 (784)
Q Consensus 544 ~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 620 (784)
.+.|+ ...+..+...+.+.|++++|.+.|++.- ..| ++..|..+..++...|++++|...++++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45565 5677778888889999999999988763 455 57799999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 044131 621 LSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 621 l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++.+|...|++++|.+.++...+
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999988765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.5e-07 Score=103.59 Aligned_cols=146 Identities=10% Similarity=-0.068 Sum_probs=93.1
Q ss_pred hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044131 425 LGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLF 501 (784)
Q Consensus 425 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 501 (784)
.|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356777777777776653 34566777777888888888888888877652 35667777888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhc---CCHHHHHHHHHhC
Q 044131 502 SEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRA---GQLEKALEFIKGL 575 (784)
Q Consensus 502 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~---g~~~eA~~~~~~m 575 (784)
++..+.. +.+...+..+..++...|++++|.+.|++..+. .|+ ...+..+..++... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8877742 234566777777888888888888888877643 343 56677777777777 8888888877765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.8e-07 Score=81.06 Aligned_cols=93 Identities=10% Similarity=0.043 Sum_probs=53.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 044131 550 EHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSA 627 (784)
Q Consensus 550 ~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 627 (784)
+.+......|.+.|++++|++.|++. ...| ++.+|..+..++...|+++.|...++++++++|+++..|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 34444555555555555555555543 2233 344555666666666666666666666666666666666666666666
Q ss_pred cCChHHHHHHHHHHH
Q 044131 628 ERDYLQAATVRQVVK 642 (784)
Q Consensus 628 ~g~~~~a~~~~~~m~ 642 (784)
.|++++|.+.++...
T Consensus 94 ~~~~~~A~~~~~~al 108 (126)
T 4gco_A 94 MREWSKAQRAYEDAL 108 (126)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 666666666655544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-07 Score=85.40 Aligned_cols=100 Identities=10% Similarity=0.021 Sum_probs=85.7
Q ss_pred CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHH
Q 044131 544 GFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVL 620 (784)
Q Consensus 544 ~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 620 (784)
.+.|+ ...+..+...+.+.|++++|...+++.- ..| ++..|..+..++...|+++.|...++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 44554 5566777888888999999998888762 344 67799999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 044131 621 LSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 621 l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++.+|...|++++|.+.++...+
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999887654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.1e-06 Score=88.60 Aligned_cols=220 Identities=11% Similarity=-0.021 Sum_probs=150.4
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHH
Q 044131 390 NGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEAREL 469 (784)
Q Consensus 390 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 469 (784)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 467788888888776531 111 0 11135666666665544 4567778888888887
Q ss_pred HhhcCC-----CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHccCCHHHHHHH
Q 044131 470 FDLMSH-----KS----EVTWNTMISGYGLHGHGLEALQLFSEMLHSGI---RPS--GVTFLSVLYACSHAGLVREGDEI 535 (784)
Q Consensus 470 f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~pd--~~t~~~ll~a~~~~g~~~~a~~~ 535 (784)
|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...+.. |++++|.++
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 776542 11 34788888899999999999999998765311 222 3467778888888 999999999
Q ss_pred HHHhHHhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 044131 536 FQSMIHDHGFKPL----AEHYACMVDILGRAGQLEKALEFIKGLA-V---EPG----PAVWGALLGACMIHKDTNLARVA 603 (784)
Q Consensus 536 ~~~m~~~~~~~p~----~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~---~p~----~~~~~~ll~a~~~~g~~~~a~~~ 603 (784)
|++..+.+.-..+ ...+..+..+|.+.|++++|.+.+++.- + .++ ...|..+...+...|+++.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988753211111 4577888999999999999999988752 1 122 22666677777888999999999
Q ss_pred HHHHhcCCCCCcch-----HHHHHHHHHhcCChHHHHHH
Q 044131 604 SEKLFELDPENVGY-----HVLLSNIYSAERDYLQAATV 637 (784)
Q Consensus 604 ~~~~~~l~p~~~~~-----~~~l~~~y~~~g~~~~a~~~ 637 (784)
+++++ ++|+.... ...++..| ..|+.+.+.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 99976543 33444545 46676655553
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.1e-07 Score=94.92 Aligned_cols=192 Identities=8% Similarity=-0.075 Sum_probs=130.7
Q ss_pred chhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044131 446 NIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYA 522 (784)
Q Consensus 446 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 522 (784)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++..+.. +.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34456667777888888888888887765 2367788888888888888888888888887742 2345667778888
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLAR 601 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~ 601 (784)
+...|++++|...|+...+. .|+ ...+...+....+.++..+... .......++..+...+.. +. .|+.+.|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l~-~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-LI-AAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-HH-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-HH-HHHHHHHH
Confidence 88888888888888887643 232 1112122222222222222222 222333445555444433 22 68999999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 044131 602 VASEKLFELDPENVGYHVLLSNIYSAE-RDYLQAATVRQVVKKR 644 (784)
Q Consensus 602 ~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~ 644 (784)
..++++++++|++......+..++... ++++++.+++....+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999888888888888887 7899999999877653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=3.3e-06 Score=86.20 Aligned_cols=160 Identities=7% Similarity=-0.031 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHH-HHHHH
Q 044131 413 VTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH--KSEVTWNTM-ISGYG 489 (784)
Q Consensus 413 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~l-i~~~~ 489 (784)
..+..+...+...|+++.|...++.+.+.. +.+...+..|...|.+.|++++|...|+++.. |+...+... ...+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 344455555666677777777777766654 44566777788888888888888888888763 444332222 23356
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 044131 490 LHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKAL 569 (784)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~ 569 (784)
+.++.++|+..|++..+.. +.+...+..+..++...|++++|...|+.+.+...-..+...+..++.+|...|+.++|.
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 6677777888887777742 334556777777777788888888887777754211112445666666666666666666
Q ss_pred HHHHh
Q 044131 570 EFIKG 574 (784)
Q Consensus 570 ~~~~~ 574 (784)
..+++
T Consensus 276 ~~~r~ 280 (287)
T 3qou_A 276 SXYRR 280 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.8e-07 Score=83.04 Aligned_cols=154 Identities=15% Similarity=0.067 Sum_probs=108.8
Q ss_pred HHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHH-HHHc
Q 044131 415 VSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH--KSEVTWNTMISG-YGLH 491 (784)
Q Consensus 415 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~-~~~~ 491 (784)
+......+...|+++.|...++.+.+.. +.+...+..+...|.+.|++++|...|++... |+...+..+... +...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 4455667888999999999999887654 45678899999999999999999999999874 344433322211 2222
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC---cchHHHHHHHHHhcCCHHH
Q 044131 492 GHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL---AEHYACMVDILGRAGQLEK 567 (784)
Q Consensus 492 g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~lv~~l~r~g~~~e 567 (784)
+...+|+..|++..+. .| +...+..+..++...|++++|...|+.+.+ ..|+ ...+..+..++...|+.++
T Consensus 88 ~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 88 AAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILK---VNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCcccChHHHHHHHHHHHHHhCCCCc
Confidence 3334577888887773 45 456677777778888888888888887763 3444 3456667777777777777
Q ss_pred HHHHHHh
Q 044131 568 ALEFIKG 574 (784)
Q Consensus 568 A~~~~~~ 574 (784)
|...+++
T Consensus 163 A~~~y~~ 169 (176)
T 2r5s_A 163 IASKYRR 169 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.49 E-value=2e-06 Score=83.17 Aligned_cols=122 Identities=7% Similarity=-0.067 Sum_probs=89.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcC
Q 044131 518 SVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-V-EPGPAVWGALLGACMIHK 595 (784)
Q Consensus 518 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~~~~~~ll~a~~~~g 595 (784)
.+...+...|++++|.+.|+.. +.|+...|..+...|.+.|++++|.+.+++.- . +.+...|..+..++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 3444455566666666666544 23455566666666666666666666665541 2 335668888888888999
Q ss_pred CHHHHHHHHHHHhcCCCCCc----------------chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 596 DTNLARVASEKLFELDPENV----------------GYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 596 ~~~~a~~~~~~~~~l~p~~~----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
+++.|...+++++++.|++. ..+..++.+|...|++++|.+.++...+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999999888877 88999999999999999999999887764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.48 E-value=3.1e-06 Score=82.85 Aligned_cols=185 Identities=11% Similarity=0.003 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCC--chhhHhHHHHHHHhcCCHHHHHHHHhhcCC--CCH----HHHHH
Q 044131 412 PVTVSSILSACAQLGAISLGKWVHELVKSRNFES--NIYVSTALIDMYAKCGNIVEARELFDLMSH--KSE----VTWNT 483 (784)
Q Consensus 412 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~----~~~~~ 483 (784)
...+......+...|+++.|...++.+++..-.. ....+..+...|.+.|++++|...|++..+ |+. .+|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4455566677889999999999999999864211 235677888999999999999999998762 321 24555
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHhHHhcC
Q 044131 484 MISGYGL------------------HGHGLEALQLFSEMLHSGIRPSGVT-FLSVLYACSHAGLVREGDEIFQSMIHDHG 544 (784)
Q Consensus 484 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 544 (784)
+..++.. .|+.++|+..|+++++. .|+... ...... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence 5555554 57899999999999984 465432 211110 000111111
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcch
Q 044131 545 FKPLAEHYACMVDILGRAGQLEKALEFIKGLA-VEPG----PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGY 617 (784)
Q Consensus 545 ~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~ 617 (784)
...-.+...|.+.|++++|...++++- ..|+ ...+..+..++...|+.+.|...++++....|++...
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 122346778889999999999988762 3333 2478888999999999999999999999999987654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.47 E-value=8.5e-07 Score=77.96 Aligned_cols=107 Identities=13% Similarity=0.051 Sum_probs=78.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGAC 591 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~ 591 (784)
.+......+.+.|++++|.+.|++.++. .|+ ...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3445556666666666666666666532 343 556666667777777777777776654 2344 466899999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 044131 592 MIHKDTNLARVASEKLFELDPENVGYHVLLSNI 624 (784)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 624 (784)
...|++++|...++++++++|+++..+..|+++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999988888765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-06 Score=78.69 Aligned_cols=99 Identities=10% Similarity=-0.066 Sum_probs=83.4
Q ss_pred CCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHH
Q 044131 545 FKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 545 ~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 621 (784)
+.|+ ...+..+...+.+.|++++|...+++.. ..| +...|..+..++...|+++.|...++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 3443 4455667777888888888888887762 344 677899999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 044131 622 SNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 622 ~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+.+|...|++++|.+.++...+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999987764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.7e-06 Score=86.11 Aligned_cols=162 Identities=7% Similarity=-0.123 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----cc
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSG-----VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL----AE 550 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 550 (784)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|..+|+...+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445566677788888888888777764322111 12334445566777888888888877642211111 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC------Cc
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGLA----VEPG-----PAVWGALLGACMIHKDTNLARVASEKLFELDPE------NV 615 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m~----~~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~------~~ 615 (784)
.|+.+...|...|++++|.+.+++.. ..|+ ..++..+...|...|++++|...+++++++.++ -+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 67778888888888888888876641 1222 257888889999999999999999998876432 15
Q ss_pred chHHHHHHHHHhcCChHHH-HHHHHHH
Q 044131 616 GYHVLLSNIYSAERDYLQA-ATVRQVV 641 (784)
Q Consensus 616 ~~~~~l~~~y~~~g~~~~a-~~~~~~m 641 (784)
..|..++.+|...|++++| ...++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5788999999999999999 6655543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.8e-05 Score=79.31 Aligned_cols=219 Identities=13% Similarity=0.122 Sum_probs=101.2
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhhhC--chHHHHHHHHHHHHcCCCCchhhHhHHHHHH----Hhc--
Q 044131 390 NGLTEEAISLFQEMQASKVAPNPVT-VSSILSACAQLG--AISLGKWVHELVKSRNFESNIYVSTALIDMY----AKC-- 460 (784)
Q Consensus 390 ~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y----~k~-- 460 (784)
....++|++++.+++.. .|+..| ++.--..+..++ .++++....+.++... +.+..+++---..+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 33445777777777653 454333 343334444455 5666666666665543 22333333322222 233
Q ss_pred -CCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 044131 461 -GNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGL--EALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDE 534 (784)
Q Consensus 461 -g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 534 (784)
+++++++.+++.+. .+|..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|..-.....+.|..
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~----- 196 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHL----- 196 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGG-----
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc-----
Confidence 44555555555443 234445555444444455444 5555555555432 12333333333333333330
Q ss_pred HHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC-HHHHHHHHHHHhcCC
Q 044131 535 IFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKD-TNLARVASEKLFELD 611 (784)
Q Consensus 535 ~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~-~~~a~~~~~~~~~l~ 611 (784)
.....+++++++++++ ...| |...|+.+...+...|+ .+.....++++++++
T Consensus 197 -------------------------~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 197 -------------------------ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp -------------------------CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred -------------------------chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 0000044555554433 1222 44455555555554444 222334445544444
Q ss_pred ---CCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 612 ---PENVGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 612 ---p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
|.++.....++.+|.+.|+.++|.+.++.+.
T Consensus 252 ~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 252 KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4455555555555555555555555555554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.9e-05 Score=78.18 Aligned_cols=236 Identities=11% Similarity=-0.000 Sum_probs=159.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCC--ChhHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 044131 348 VLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNG--LTEEAISLFQEMQASKVAPN-PVTVSSILSA 421 (784)
Q Consensus 348 ~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a 421 (784)
+...+.....+....++|.++++.+.. .+...||.--..+...| +++++++.++.+... .|. ...++.--..
T Consensus 35 ~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~i 112 (306)
T 3dra_A 35 IMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLI 112 (306)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHH
Confidence 333444444455555789999987653 35568999888888888 999999999999875 343 2334333333
Q ss_pred H----hhh---CchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHH--HHHHHHhhcC---CCCHHHHHHHHHHHH
Q 044131 422 C----AQL---GAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIV--EARELFDLMS---HKSEVTWNTMISGYG 489 (784)
Q Consensus 422 ~----~~~---~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~--~A~~~f~~~~---~~~~~~~~~li~~~~ 489 (784)
+ ... ++++++..+++.+.+.. +.+..+++--.-.+.+.|.++ ++++.++++. ..|..+|+--...+.
T Consensus 113 L~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 113 IGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3 444 78899999999999875 567778877777788888888 9999998887 367889987766666
Q ss_pred HcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcC
Q 044131 490 LHGH------GLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAG 563 (784)
Q Consensus 490 ~~g~------~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g 563 (784)
..|. ++++++.+++++.. .| -+...|+.+-.++.+.|
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~--~p-----------------------------------~n~SaW~y~~~ll~~~~ 234 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVK--CP-----------------------------------QNPSTWNYLLGIHERFD 234 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHH--CS-----------------------------------SCHHHHHHHHHHHHHTT
T ss_pred hccccchhhhHHHHHHHHHHHHHh--CC-----------------------------------CCccHHHHHHHHHHhcC
Confidence 6554 44555555554442 12 12344444444555555
Q ss_pred CH-HHHHHHHHhCC-C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-CCCCCcchHHHHHH
Q 044131 564 QL-EKALEFIKGLA-V----EPGPAVWGALLGACMIHKDTNLARVASEKLFE-LDPENVGYHVLLSN 623 (784)
Q Consensus 564 ~~-~eA~~~~~~m~-~----~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-l~p~~~~~~~~l~~ 623 (784)
+. +++.++.++.- . ..++..+..|..++...|+.++|..+++.+.+ ++|-...++...++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 235 RSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp CCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 42 22344544431 1 23566788888888888888899999998886 78887777665543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.1e-06 Score=80.86 Aligned_cols=182 Identities=12% Similarity=0.030 Sum_probs=108.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCC
Q 044131 383 MIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGN 462 (784)
Q Consensus 383 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 462 (784)
....+.+.|++++|+..|++.... .|+........ . .. ..........+.+...|.+.|+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-~---~~--------------~~~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-N---VD--------------KNSEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-H---SC--------------TTSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-h---hc--------------chhhhhHHHHHHHHHHHHHCCC
Confidence 345566778888888888877653 34332211110 0 00 0001112233457777888888
Q ss_pred HHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCC--HHHHHHHH
Q 044131 463 IVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGL--VREGDEIF 536 (784)
Q Consensus 463 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~--~~~a~~~~ 536 (784)
+++|...|++.. ..+...|..+...|...|++++|+..|++.++. .| +..++..+..++...|. .+.+...+
T Consensus 70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 147 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDY 147 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 888888887765 346678888888888888888888888888874 44 45566666666655543 33445555
Q ss_pred HHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 044131 537 QSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEPGPAVWGALLG 589 (784)
Q Consensus 537 ~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~ 589 (784)
+... ...|....+......+...|++++|...+++. ...|+......|..
T Consensus 148 ~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 148 KKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5443 22222223334455566678888888888775 47787766655544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-05 Score=82.59 Aligned_cols=159 Identities=8% Similarity=-0.108 Sum_probs=109.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----cchHHH
Q 044131 484 MISGYGLHGHGLEALQLFSEMLHSGI-RPSGV----TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL----AEHYAC 554 (784)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 554 (784)
.+..+...|++++|+.++++..+... .|+.. .+..+...+...|++++|..+|+...+...-.++ ...|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566777788888888877776321 22211 2234555566667788888888877652211222 225777
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------cchHH
Q 044131 555 MVDILGRAGQLEKALEFIKGLA-----V---EPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPEN------VGYHV 619 (784)
Q Consensus 555 lv~~l~r~g~~~eA~~~~~~m~-----~---~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~ 619 (784)
+...|.+.|++++|.+.++++- . .|. ..++..+...+...|++++|...+++++++.+.. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 7788888888888877776541 1 122 2378889999999999999999999999865433 56789
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHH
Q 044131 620 LLSNIYSAERD-YLQAATVRQVVK 642 (784)
Q Consensus 620 ~l~~~y~~~g~-~~~a~~~~~~m~ 642 (784)
.++.+|...|+ +++|.+.++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699988876553
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=6.1e-06 Score=79.65 Aligned_cols=146 Identities=9% Similarity=-0.072 Sum_probs=106.8
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 044131 450 STALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLV 529 (784)
Q Consensus 450 ~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 529 (784)
+..+...|...|++++|...|++...++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34556677888888888888888887788888888888888888888888888888753 34556777777888888888
Q ss_pred HHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 530 REGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPG-PAVWGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 530 ~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
++|.+.|+...+. .|+..... +... .+...|+ ..+|..+..++...|+++.|...+++++
T Consensus 88 ~~A~~~~~~al~~---~~~~~~~~-----~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQ---LRGNQLID-----YKIL-----------GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHT---TTTCSEEE-----CGGG-----------TBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCccHHH-----HHHh-----------ccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888877643 23211000 0000 0123443 3578888889999999999999999999
Q ss_pred cCCCCCc
Q 044131 609 ELDPENV 615 (784)
Q Consensus 609 ~l~p~~~ 615 (784)
++.|++.
T Consensus 149 ~~~p~~~ 155 (213)
T 1hh8_A 149 SMKSEPR 155 (213)
T ss_dssp TTCCSGG
T ss_pred HcCcccc
Confidence 9999863
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.40 E-value=2.5e-06 Score=73.95 Aligned_cols=113 Identities=20% Similarity=0.200 Sum_probs=73.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACM 592 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~ 592 (784)
++..+...+...|++++|.++|+.+.+.. +.+...+..+...+.+.|++++|..+++++. .+.+..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 33444444444555555555555444321 1123445555555666666666666655542 2335667888888899
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 044131 593 IHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAER 629 (784)
Q Consensus 593 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 629 (784)
..|+++.|...++++++.+|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998988888876654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.4e-06 Score=75.21 Aligned_cols=113 Identities=14% Similarity=0.023 Sum_probs=73.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHH
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGLA-V-EPGPAVWGALLGAC 591 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~~~~~~ll~a~ 591 (784)
.+..+...+...|++++|.++|+...+ ..| +...+..+...+...|++++|.+.+++.- . +.+..+|..+..++
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 344444444444445555544444432 222 23445555555555566666655555431 2 23566888888888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 592 MIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERD 630 (784)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 630 (784)
...|+++.|...++++++++|++...+..++.+|...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999998887664
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.39 E-value=7e-06 Score=79.51 Aligned_cols=172 Identities=12% Similarity=-0.095 Sum_probs=110.3
Q ss_pred HHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC-CCHHHHHHHHHHHHHcC----CHHHHHHHHHHHH
Q 044131 431 GKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH-KSEVTWNTMISGYGLHG----HGLEALQLFSEML 505 (784)
Q Consensus 431 a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 505 (784)
|.+.+....+.| ++..+..|..+|...+++++|...|++..+ .+..++..|...|.. + +.++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444444443 455555666666666666666666666542 355566666666665 5 6777777777776
Q ss_pred HCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhHHhcCCCCC---cchHHHHHHHHHh----cCCHHHHHHHHHh
Q 044131 506 HSGIRPSGVTFLSVLYACSH----AGLVREGDEIFQSMIHDHGFKPL---AEHYACMVDILGR----AGQLEKALEFIKG 574 (784)
Q Consensus 506 ~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~lv~~l~r----~g~~~eA~~~~~~ 574 (784)
+.| +...+..|...+.. .++.++|.++|+... ...|. ...+..|..+|.. .+++++|..++++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~---~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA---RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT---SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH---HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 654 45555666666665 677778888777765 23342 5666777777776 6778888888877
Q ss_pred CC-CCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHhcCCC
Q 044131 575 LA-VEPGPAVWGALLGACMIH-K-----DTNLARVASEKLFELDP 612 (784)
Q Consensus 575 m~-~~p~~~~~~~ll~a~~~~-g-----~~~~a~~~~~~~~~l~p 612 (784)
.. ..+++..+..|...+... | |.++|...++++.+..+
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 63 234555677777766542 3 88888888888887654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.6e-06 Score=89.54 Aligned_cols=197 Identities=10% Similarity=-0.056 Sum_probs=149.6
Q ss_pred hhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044131 424 QLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSE 503 (784)
Q Consensus 424 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (784)
..|++++|.++++.+.+..- .. .+...|++++|...|.. ....|...|++++|+..|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 35778889998888876421 11 11115889999888775 35678899999999999998
Q ss_pred HHHCCC---CC-C-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCC--CC--cchHHHHHHHHHhcCCHHHHHHHHHh
Q 044131 504 MLHSGI---RP-S-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFK--PL--AEHYACMVDILGRAGQLEKALEFIKG 574 (784)
Q Consensus 504 m~~~g~---~p-d-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p~--~~~~~~lv~~l~r~g~~~eA~~~~~~ 574 (784)
..+... .+ . ..+|..+...|...|++++|..+|++..+-+.-. |. ...+..+..+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 876311 11 1 3468888899999999999999999876543111 11 4578888999988 999999999987
Q ss_pred CC-CCC---C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcc------hHHHHHHHHHhcCChHHHHHHHHH
Q 044131 575 LA-VEP---G----PAVWGALLGACMIHKDTNLARVASEKLFELDPENVG------YHVLLSNIYSAERDYLQAATVRQV 640 (784)
Q Consensus 575 m~-~~p---~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~ 640 (784)
.- +.| + ..++..+...+...|+++.|...+++++++.|++.. .+..++.+|...|++++|...++.
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 51 111 1 457888999999999999999999999998765542 667788889999999999999987
Q ss_pred HH
Q 044131 641 VK 642 (784)
Q Consensus 641 m~ 642 (784)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 65
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=3.1e-06 Score=73.95 Aligned_cols=115 Identities=15% Similarity=0.079 Sum_probs=78.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACM 592 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~ 592 (784)
.+..+...+...|++++|..+|+...+.. +.+...+..+...+...|++++|.+.+++.. ..| +...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 34444445555555555555555554321 1124455555666666666666666665541 233 4667888888899
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 044131 593 IHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDY 631 (784)
Q Consensus 593 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 631 (784)
..|+++.|...++++++++|+++..+..++.++...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999888875
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.7e-06 Score=90.66 Aligned_cols=158 Identities=15% Similarity=0.096 Sum_probs=109.2
Q ss_pred CHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 044131 462 NIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQS 538 (784)
Q Consensus 462 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 538 (784)
++++|...|+.... .+...|..+...|.+.|++++|+..|++.++. .|+...+ ..+++.+.- .
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~-~ 193 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQ-A 193 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHH-H
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHH-H
Confidence 34444444444331 24557777888888888888888888888774 3332100 001111100 0
Q ss_pred hHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcc
Q 044131 539 MIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVG 616 (784)
Q Consensus 539 m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 616 (784)
+ ....|..+..+|.+.|++++|++.+++. .+.| +...|..+..++...|+++.|...++++++++|+++.
T Consensus 194 ~--------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 265 (336)
T 1p5q_A 194 L--------RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265 (336)
T ss_dssp H--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred H--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence 0 1245666777777777777777777665 2344 5678999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHH-HHHHHH
Q 044131 617 YHVLLSNIYSAERDYLQAA-TVRQVV 641 (784)
Q Consensus 617 ~~~~l~~~y~~~g~~~~a~-~~~~~m 641 (784)
.+..++.+|...|+++++. +.++.|
T Consensus 266 a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 266 AKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999994 455555
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.2e-06 Score=74.00 Aligned_cols=94 Identities=14% Similarity=0.035 Sum_probs=76.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 044131 550 EHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSA 627 (784)
Q Consensus 550 ~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 627 (784)
..+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...++++++++|+++..+..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555666777778888888777765 2334 567888888899999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHh
Q 044131 628 ERDYLQAATVRQVVKK 643 (784)
Q Consensus 628 ~g~~~~a~~~~~~m~~ 643 (784)
.|++++|.+.++...+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 9999999998887655
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.33 E-value=5e-06 Score=76.40 Aligned_cols=123 Identities=11% Similarity=-0.012 Sum_probs=81.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHh
Q 044131 517 LSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGL-AVE-PGPAVWGALLGACMI 593 (784)
Q Consensus 517 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~a~~~ 593 (784)
..+...+...|++++|...|+...+. .| +...+..+...+...|++++|.+.+++. ... .+..+|..+..++..
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 33344444455555555555544432 22 2444555555556666666666655543 122 346678888888999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcchHHHHH--HHHHhcCChHHHHHHHHHHH
Q 044131 594 HKDTNLARVASEKLFELDPENVGYHVLLS--NIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 594 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~--~~y~~~g~~~~a~~~~~~m~ 642 (784)
.|+++.|...++++++++|+++..+..+. ..+...|++++|.+.+....
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999999999999888775544 44888899999999887654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.30 E-value=6.8e-05 Score=76.53 Aligned_cols=158 Identities=8% Similarity=-0.096 Sum_probs=119.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-----CCH---H-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 044131 453 LIDMYAKCGNIVEARELFDLMSH-----KSE---V-TWNTMISGYGLHGHGLEALQLFSEMLHSGIR-PS----GVTFLS 518 (784)
Q Consensus 453 Li~~y~k~g~~~~A~~~f~~~~~-----~~~---~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd----~~t~~~ 518 (784)
.+..+...|++++|...+++..+ ++. . .+..+...+...|++++|+..|++..+.... +| ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46778899999999999988653 121 1 3334666677778999999999999984332 23 236888
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcC----CCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 044131 519 VLYACSHAGLVREGDEIFQSMIHDHG----FKPL-AEHYACMVDILGRAGQLEKALEFIKGL-------AVEPG-PAVWG 585 (784)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~ 585 (784)
+...+...|++++|..+|+.+.+... ..|. ...|..+...|.+.|++++|.+++++. ...+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999874321 1222 347888999999999999999998765 12233 56888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHhcC
Q 044131 586 ALLGACMIHKD-TNLARVASEKLFEL 610 (784)
Q Consensus 586 ~ll~a~~~~g~-~~~a~~~~~~~~~l 610 (784)
.+..++...|+ .+.|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999995 69999999998763
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.5e-05 Score=79.54 Aligned_cols=180 Identities=10% Similarity=-0.065 Sum_probs=129.9
Q ss_pred hcCCHHHHHHHHhhcC---CCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHCCCCCCH---------------
Q 044131 459 KCGNIVEARELFDLMS---HKSEVTWNTM-------ISGYGLHGHGLEALQLFSEMLHSGIRPSG--------------- 513 (784)
Q Consensus 459 k~g~~~~A~~~f~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~--------------- 513 (784)
..++.+.|.+.|.++. ......|+.+ ...+...++..+++..+.+-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4688888888888776 2356688877 4556666666666666655444 33322
Q ss_pred -------HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 044131 514 -------VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGP----A 582 (784)
Q Consensus 514 -------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~----~ 582 (784)
.....+..++...|++++|.+.|+.+.. ..|+......+..++.+.|++++|+..++.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1233455677888999999999987763 3454325556667888999999999999876434433 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCC--CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLFELD--PE-NVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~~l~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++..|..++...|+.++|+..++++..-. |. .+.....++.++.+.|+.++|...++.+..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77888889999999999999999987533 54 445778889999999999999999988876
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.7e-06 Score=83.08 Aligned_cols=133 Identities=11% Similarity=-0.076 Sum_probs=70.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC--cchHHHHHHHHHhc
Q 044131 485 ISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL--AEHYACMVDILGRA 562 (784)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~r~ 562 (784)
...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++.+.
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHHC
Confidence 33444445555555555444432 233333333333455555555555555533210 0 110 12344555566666
Q ss_pred CCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHH
Q 044131 563 GQLEKALEFIKGLA---VEPG--PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLS 622 (784)
Q Consensus 563 g~~~eA~~~~~~m~---~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 622 (784)
|++++|++.+++.. ..|. ...+..+..+++..|+.++|...++++++.+|+ +..+..|.
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 66666666666541 2143 235666777777888888888888888888887 65555553
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.3e-06 Score=77.05 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=71.1
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHhcCCH--HH
Q 044131 526 AGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGA-CMIHKDT--NL 599 (784)
Q Consensus 526 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a-~~~~g~~--~~ 599 (784)
.|++++|...|+...+. .| +...|..+...|...|++++|...+++.- ..| +...|..+..+ +...|++ +.
T Consensus 23 ~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34455555555554432 22 24455555555555666666665555441 222 45566666666 6677777 77
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 600 ARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 600 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
|...++++++++|+++..+..++.+|...|++++|...++...+
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 88888888888888777788888888888888888887776655
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.7e-05 Score=75.74 Aligned_cols=154 Identities=14% Similarity=0.023 Sum_probs=79.9
Q ss_pred hcCCHHHHHH---HHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHH
Q 044131 459 KCGNIVEARE---LFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHS----GIRP-SGVTFLSVLYACSHAGLVR 530 (784)
Q Consensus 459 k~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~ll~a~~~~g~~~ 530 (784)
..|++++|.+ .+..-+.....+|+.+...|...|++++|+..|++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566777776 544433334556677777777777777777777766541 1111 1234455555566666666
Q ss_pred HHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 531 EGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEP--GPAVWGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
+|.++|++..+...-.++ .| ...++..+...+...|+++.|...+++++
T Consensus 84 ~A~~~~~~al~~~~~~~~-----------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEERELLASLPE-----------------------------DPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHSCC-----------------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc-----------------------------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666666555432111110 11 01234445555555555555555555555
Q ss_pred cCCC--CC----cchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 609 ELDP--EN----VGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 609 ~l~p--~~----~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
++.+ .+ ...+..++.+|...|++++|.+.++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4321 11 112456677777777777776666544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=2.8e-06 Score=81.28 Aligned_cols=171 Identities=9% Similarity=-0.019 Sum_probs=101.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044131 452 ALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGL 528 (784)
Q Consensus 452 ~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 528 (784)
..+......|.++.|.+.|+.-.. .....|..+...+...|++++|+..|++..+. .|+...+... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~ 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------I 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------H
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------h
Confidence 334445556677777776664332 23456777777888888889998888888873 2221100000 0
Q ss_pred HHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044131 529 VREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEK 606 (784)
Q Consensus 529 ~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~ 606 (784)
.+.-. ..+ ....|..+..+|.+.|++++|...+++. ...| +..+|..+..++...|+++.|...+++
T Consensus 79 ~~~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 79 LLDKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 00000 000 1234556666677777777777777654 2233 566888899999999999999999999
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCChHHHH-HHHHHHHh
Q 044131 607 LFELDPENVGYHVLLSNIYSAERDYLQAA-TVRQVVKK 643 (784)
Q Consensus 607 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a~-~~~~~m~~ 643 (784)
+++++|+++..+..++.++...|+.+++. ..++.|-.
T Consensus 148 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 148 AASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988888776 44444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=3.8e-06 Score=73.12 Aligned_cols=94 Identities=18% Similarity=0.123 Sum_probs=83.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 044131 550 EHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSA 627 (784)
Q Consensus 550 ~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 627 (784)
..+..+...+.+.|++++|...+++.- ..| +...|..+..++...|+.+.|+..++++++++|+++..+..|+.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 456667788889999999999998863 455 677999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHh
Q 044131 628 ERDYLQAATVRQVVKK 643 (784)
Q Consensus 628 ~g~~~~a~~~~~~m~~ 643 (784)
.|++++|...++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999987765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.23 E-value=7e-06 Score=69.47 Aligned_cols=96 Identities=10% Similarity=0.018 Sum_probs=79.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--CcchHHHHHHH
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGLA-V-EPGPAVWGALLGACMIHKDTNLARVASEKLFELDPE--NVGYHVLLSNI 624 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~ 624 (784)
...+..+...+.+.|++++|...+++.- . +.+..+|..+..++...|+++.|...+++++++.|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 5566677778888888888888887652 2 335678888888899999999999999999999999 88899999999
Q ss_pred HHhc-CChHHHHHHHHHHHhC
Q 044131 625 YSAE-RDYLQAATVRQVVKKR 644 (784)
Q Consensus 625 y~~~-g~~~~a~~~~~~m~~~ 644 (784)
|... |++++|.+.++...+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 9999 9999999988877653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.3e-06 Score=77.55 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=92.8
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHH-HHhcCCH--
Q 044131 490 LHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDI-LGRAGQL-- 565 (784)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~-l~r~g~~-- 565 (784)
..|++++|+..|++..+.. +.+...+..+...+...|++++|..+|+...+. .| +...+..+..+ +.+.|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcch
Confidence 4567777777777776642 335566777777777888888888888877643 23 35566677777 6678887
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHH
Q 044131 566 EKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLS 622 (784)
Q Consensus 566 ~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 622 (784)
++|...+++. ...| +...|..+...+...|+++.|...++++++++|+++.....+.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE 156 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 8888888765 2344 4678888999999999999999999999999999876655443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.5e-05 Score=78.75 Aligned_cols=161 Identities=7% Similarity=-0.119 Sum_probs=114.5
Q ss_pred hHhHHHHHHHhcCCHHHHHHHHhhcC---CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 044131 449 VSTALIDMYAKCGNIVEARELFDLMS---HKSE------VTWNTMISGYGLHGHGLEALQLFSEMLHSGI---RPS--GV 514 (784)
Q Consensus 449 ~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~pd--~~ 514 (784)
.+...+..|...|++++|.+.+.+.. .... ..+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34456677888899999888886543 1111 2334455566777899999999998876321 122 34
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHhCC-C------CCC-H
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-----AEHYACMVDILGRAGQLEKALEFIKGLA-V------EPG-P 581 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~------~p~-~ 581 (784)
++..+...+...|++++|..+|++..+.....|+ ...|..+...|.+.|++++|.+++++.- + .+. .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888899999999999999988733222233 2578888889999999999999887641 1 111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHhc
Q 044131 582 AVWGALLGACMIHKDTNLA-RVASEKLFE 609 (784)
Q Consensus 582 ~~~~~ll~a~~~~g~~~~a-~~~~~~~~~ 609 (784)
.+|..+...+...|+.+.| ...++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788888899999999999 777888765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.5e-05 Score=70.61 Aligned_cols=96 Identities=15% Similarity=0.055 Sum_probs=77.9
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 044131 548 LAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIY 625 (784)
Q Consensus 548 ~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 625 (784)
+...+..+...+...|++++|...+++. ...| +...|..+...+...|+++.|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3556666777777777777777777664 2334 4668888888889999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHh
Q 044131 626 SAERDYLQAATVRQVVKK 643 (784)
Q Consensus 626 ~~~g~~~~a~~~~~~m~~ 643 (784)
...|++++|...++...+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999998887654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.9e-06 Score=76.90 Aligned_cols=104 Identities=12% Similarity=0.034 Sum_probs=71.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGAC 591 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~ 591 (784)
.+..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|.+.+++. ...| ++..|..+..++
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3444555566666666666666665532 33 3555666666667777777777776664 2334 456788888899
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCcchHHHH
Q 044131 592 MIHKDTNLARVASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 621 (784)
...|+++.|+..+++++++.|+++......
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 999999999999999999999888765443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.5e-05 Score=67.99 Aligned_cols=105 Identities=13% Similarity=0.054 Sum_probs=49.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGAC 591 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~ 591 (784)
.+..+...+...|++++|...|+...+. .| +...+..+...+.+.|++++|.+.+++. ...| +...|..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444455555555555555555555432 22 2344444444555555555555544443 1122 233444444445
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCcchHHHHH
Q 044131 592 MIHKDTNLARVASEKLFELDPENVGYHVLLS 622 (784)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 622 (784)
...|+++.|...++++++++|+++..+..++
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5555555555555555555554444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.1e-05 Score=70.46 Aligned_cols=77 Identities=13% Similarity=-0.020 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSA 627 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 627 (784)
.|..+...|...|++++|.+.+++. ...| +...|..+..++...|+++.|...++++++++|+++..+..+..+...
T Consensus 67 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 67 LHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 3334444444445555555444433 1223 455777777788888888888888888888888887777777666543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.7e-05 Score=72.48 Aligned_cols=127 Identities=15% Similarity=0.044 Sum_probs=68.0
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC--
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMSH---------KSEVTWNTMISGYGLHGHGLEALQLFSEMLHS----GIRP-- 511 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-- 511 (784)
..++..+...|...|++++|...|++... ....+++.+...|...|++++|+..|++..+. +-.|
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 33444455555555555555555544331 12345666777777777777777777776542 1111
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHH
Q 044131 512 SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILGRAGQLEKALEFIK 573 (784)
Q Consensus 512 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r~g~~~eA~~~~~ 573 (784)
....+..+...+...|++++|..++++..+...-.++ ...+..+...+.+.|++++|.+.++
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 1234556666777777777777777766532110111 1223444555555555555555444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=2.6e-05 Score=66.52 Aligned_cols=93 Identities=13% Similarity=0.039 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAE 628 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 628 (784)
.+..+...+...|++++|.+.+++.. ..| +...|..+...+...|+++.|...++++++++|+++..+..++.+|...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 34444455555555555555555431 122 3445555555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHh
Q 044131 629 RDYLQAATVRQVVKK 643 (784)
Q Consensus 629 g~~~~a~~~~~~m~~ 643 (784)
|++++|.+.++...+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555554443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.12 E-value=5.8e-06 Score=90.93 Aligned_cols=115 Identities=11% Similarity=-0.004 Sum_probs=84.7
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNL 599 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~ 599 (784)
+...|++++|.++|++..+. .|+ ...|..+..+|.+.|++++|++.+++. ...| +..+|..+..++...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44556666666666666533 343 556666777777777777777777665 2444 46688999999999999999
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHH--HHhcCChHHHHHHHHH
Q 044131 600 ARVASEKLFELDPENVGYHVLLSNI--YSAERDYLQAATVRQV 640 (784)
Q Consensus 600 a~~~~~~~~~l~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~~ 640 (784)
|+..++++++++|+++..+..++.+ +...|++++|.+.++.
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999988 8889999999998763
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.12 E-value=3.1e-05 Score=66.77 Aligned_cols=95 Identities=24% Similarity=0.280 Sum_probs=85.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGLA-V-EPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
...+..+...+.+.|++++|.++++++. . +.+..+|..+...+...|+++.|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4677888899999999999999998873 2 3467789999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHh
Q 044131 627 AERDYLQAATVRQVVKK 643 (784)
Q Consensus 627 ~~g~~~~a~~~~~~m~~ 643 (784)
..|++++|.+.++.+.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 99999999999988765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.11 E-value=1e-05 Score=74.63 Aligned_cols=91 Identities=14% Similarity=0.050 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 044131 552 YACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAER 629 (784)
Q Consensus 552 ~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 629 (784)
+..+...+.+.|++++|++.+++. ...| +...|..+..++...|+++.|+..++++++++|+++..|..++.+|...|
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 93 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMA 93 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 333444444444444444444433 1222 34455555555555555555555555555555555555555555555555
Q ss_pred ChHHHHHHHHHHH
Q 044131 630 DYLQAATVRQVVK 642 (784)
Q Consensus 630 ~~~~a~~~~~~m~ 642 (784)
++++|.+.++...
T Consensus 94 ~~~~A~~~~~~al 106 (164)
T 3sz7_A 94 DYKGAKEAYEKGI 106 (164)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.09 E-value=7.5e-06 Score=74.29 Aligned_cols=95 Identities=13% Similarity=0.038 Sum_probs=53.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 044131 518 SVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIH 594 (784)
Q Consensus 518 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~ 594 (784)
.+...+...|++++|..+|+...+. .|+ ...|..+..+|.+.|++++|.+.+++. .+.| ++..|..+..++...
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL 117 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 3334444444444444444444321 232 344445555555555555555555444 1233 355677777777778
Q ss_pred CCHHHHHHHHHHHhcCCCCCc
Q 044131 595 KDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 595 g~~~~a~~~~~~~~~l~p~~~ 615 (784)
|++++|...+++++++.|+++
T Consensus 118 g~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 118 KAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp TCHHHHHHHHHHHHHHCCCHH
T ss_pred CCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888877643
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.6e-05 Score=73.11 Aligned_cols=63 Identities=10% Similarity=0.023 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 581 PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 581 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
..+|..+..++...|+++.|...++++++++|+++..|..++.+|...|++++|...++...+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 457888888999999999999999999999999999999999999999999999999887655
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.1e-05 Score=67.81 Aligned_cols=95 Identities=16% Similarity=0.107 Sum_probs=86.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...++++++++|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 567888899999999999999999886 4455 67799999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHh
Q 044131 627 AERDYLQAATVRQVVKK 643 (784)
Q Consensus 627 ~~g~~~~a~~~~~~m~~ 643 (784)
..|++++|.+.++...+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999999987765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=3.8e-05 Score=68.81 Aligned_cols=95 Identities=16% Similarity=0.022 Sum_probs=84.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGL-AVEPG----PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSN 623 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 623 (784)
...+..+...+.+.|++++|.+.+++. ...|+ ..+|..+..++...|+++.|...++++++++|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 556777788888888888888888775 45676 5688899999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 044131 624 IYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 624 ~y~~~g~~~~a~~~~~~m~~ 643 (784)
+|...|++++|.+.++...+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999987765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.08 E-value=4e-05 Score=70.22 Aligned_cols=125 Identities=12% Similarity=-0.001 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDI 558 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~ 558 (784)
.|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|.++|+...+. .| +...|..+...
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHH
Confidence 34444444445555555555555544421 223344444444555555555555555554432 22 23444455555
Q ss_pred HHhcCCHHHHHHHHHhCC-CCC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHh
Q 044131 559 LGRAGQLEKALEFIKGLA-VEP-GPAVWGA--LLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 559 l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~--ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
+.+.|++++|.+.+++.. ..| +...|.. ++..+...|++++|...+++..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 555555555555554431 222 2233322 2222444556666666555543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-05 Score=72.44 Aligned_cols=106 Identities=15% Similarity=0.042 Sum_probs=71.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 044131 516 FLSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACM 592 (784)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~ 592 (784)
+..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|...+++.- ..| ++..|..+..++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344445555566666666666655532 33 34555666666666677777766666542 233 4557788888889
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 044131 593 IHKDTNLARVASEKLFELDPENVGYHVLLSNI 624 (784)
Q Consensus 593 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 624 (784)
..|+++.|...++++++++|+++........+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99999999999999999999888776655444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.06 E-value=2e-05 Score=72.52 Aligned_cols=106 Identities=19% Similarity=0.057 Sum_probs=71.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGAC 591 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~ 591 (784)
.+..+...+...|++++|.++|+..++. .| +...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444445555555555555555555432 23 2455556666666666666666666554 2344 466888999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 044131 592 MIHKDTNLARVASEKLFELDPENVGYHVLLSN 623 (784)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 623 (784)
...|+++.|...++++++++|+++..+...+-
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999987665543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.8e-05 Score=69.11 Aligned_cols=106 Identities=12% Similarity=-0.024 Sum_probs=64.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 044131 517 LSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMI 593 (784)
Q Consensus 517 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~ 593 (784)
..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++..
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33344444444555555554444422 22 2444555555555555555555555543 1233 45677888888888
Q ss_pred cCCHHHHHHHHHHHhcCC------CCCcchHHHHHHHH
Q 044131 594 HKDTNLARVASEKLFELD------PENVGYHVLLSNIY 625 (784)
Q Consensus 594 ~g~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~y 625 (784)
.|+++.|...++++++++ |+++.....+..+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888888888888888888 77777776666554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=4.6e-05 Score=66.27 Aligned_cols=95 Identities=14% Similarity=0.050 Sum_probs=85.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
...+..+...+...|++++|.+.+++.. ..| +..+|..+...+...|+++.|...++++++++|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 5567788889999999999999998862 334 67789999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHh
Q 044131 627 AERDYLQAATVRQVVKK 643 (784)
Q Consensus 627 ~~g~~~~a~~~~~~m~~ 643 (784)
..|++++|.+.++...+
T Consensus 92 ~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 99999999999988765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00064 Score=69.70 Aligned_cols=227 Identities=15% Similarity=0.070 Sum_probs=141.5
Q ss_pred hCCChh-HHHHHHHHHHhCCCCCCHHH-HHHHHHHHhhhCc----------hHHHHHHHHHHHHcCCCCchhhHhHHHHH
Q 044131 389 QNGLTE-EAISLFQEMQASKVAPNPVT-VSSILSACAQLGA----------ISLGKWVHELVKSRNFESNIYVSTALIDM 456 (784)
Q Consensus 389 ~~g~~~-~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~----------~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 456 (784)
+.|.++ +|++++..+... .|+..| ++.=-..+...+. ++.+..++..+.... +-+..+++--.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445544 678888877753 555443 2222122222222 566777777777654 4566667666666
Q ss_pred HHhcC--CHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----
Q 044131 457 YAKCG--NIVEARELFDLMS---HKSEVTWNTMISGYGLHGH-GLEALQLFSEMLHSGIRPSGVTFLSVLYACSHA---- 526 (784)
Q Consensus 457 y~k~g--~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~---- 526 (784)
+.+.| .+++++.+++.+. .+|..+|+--.-.+...|. .+++++.++++++.. +-|...|+.......+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 66667 4788888888776 4677788887777777777 588888888888754 33455555544444433
Q ss_pred ----------CCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhc-----------CCHHHHHHHHHhC-CCCCCHHH
Q 044131 527 ----------GLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRA-----------GQLEKALEFIKGL-AVEPGPAV 583 (784)
Q Consensus 527 ----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~-----------g~~~eA~~~~~~m-~~~p~~~~ 583 (784)
+.++++++++...... .|+ ...|+-+-.++.+. +.++++++.++++ ...||. .
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~ 272 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-K 272 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred ccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-c
Confidence 4577788888877643 454 55565555555555 4577787777776 356654 4
Q ss_pred HHHHHHHH-----HhcCCHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 044131 584 WGALLGAC-----MIHKDTNLARVASEKLFELDPENVGYHVLLSN 623 (784)
Q Consensus 584 ~~~ll~a~-----~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 623 (784)
|.-+..+. ...|..++....+.++.++||...+.|.-|..
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 43222221 23566777788888888888887777766544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-05 Score=88.85 Aligned_cols=117 Identities=10% Similarity=0.039 Sum_probs=66.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 044131 453 LIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLV 529 (784)
Q Consensus 453 Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 529 (784)
+...|.+.|++++|.+.|++.. ..+..+|..+..+|.+.|++++|++.|++..+.. +.+..++..+..++...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 3344566677777777776554 2345667777777777777777777777766642 22345566666666667777
Q ss_pred HHHHHHHHHhHHhcCCCCC-cchHHHHHHH--HHhcCCHHHHHHHHH
Q 044131 530 REGDEIFQSMIHDHGFKPL-AEHYACMVDI--LGRAGQLEKALEFIK 573 (784)
Q Consensus 530 ~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~--l~r~g~~~eA~~~~~ 573 (784)
++|.+.|++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777666543 232 2333333333 555566666666555
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0014 Score=67.57 Aligned_cols=157 Identities=13% Similarity=0.017 Sum_probs=81.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhhhC-chHHHHHHHHHHHHcCCCCchhhHhHHHHHH
Q 044131 380 WNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPV-TVSSILSACAQLG-AISLGKWVHELVKSRNFESNIYVSTALIDMY 457 (784)
Q Consensus 380 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 457 (784)
|+.+-......+..++|++++.+++.. .|+.. .++.--..+...+ .++++..+.+.+++.. +.+..+++--...+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 333333444455566788888777764 44433 3344334444455 3666666666666543 33445555444444
Q ss_pred Hhc-C-CHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044131 458 AKC-G-NIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGL--------EALQLFSEMLHSGIRPSGVTFLSVLYACS 524 (784)
Q Consensus 458 ~k~-g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 524 (784)
.+. + ++++++++++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++++.. .-|...|+.-.....
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 444 4 56666666666653 35556655444444444444 5666666665542 224444444444444
Q ss_pred ccCC-------HHHHHHHHHHhH
Q 044131 525 HAGL-------VREGDEIFQSMI 540 (784)
Q Consensus 525 ~~g~-------~~~a~~~~~~m~ 540 (784)
+.+. +++++++++.++
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI 235 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSI 235 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHH
T ss_pred hccccccchHHHHHHHHHHHHHH
Confidence 4443 344444444444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.1e-05 Score=69.03 Aligned_cols=92 Identities=13% Similarity=0.035 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcc-------hHHHH
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVG-------YHVLL 621 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~-------~~~~l 621 (784)
.+..+...+.+.|++++|++.+++. .+.| +..+|..+..++...|+++.|+..++++++++|+++. .|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4555677777788888888887765 2445 5678999999999999999999999999999987754 57778
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 044131 622 SNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 622 ~~~y~~~g~~~~a~~~~~~m~ 642 (784)
+++|...|++++|.+.++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999987654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00061 Score=70.16 Aligned_cols=211 Identities=11% Similarity=0.038 Sum_probs=153.1
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcC-CHHHHHHHHhhcC---CCCHHHHHHHHHHHHHc-C-CHHHHHHHH
Q 044131 428 ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCG-NIVEARELFDLMS---HKSEVTWNTMISGYGLH-G-HGLEALQLF 501 (784)
Q Consensus 428 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g-~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~~~ 501 (784)
.++|.++.+.++..+ +.+..+++.--..+...| .+++++..++.+. .++..+|+--...+... + +++++++++
T Consensus 70 se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 70 SERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 456778888888765 456667777777777788 5999999999876 46788999988888777 7 899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCC-------H
Q 044131 502 SEMLHSGIRPSGVTFLSVLYACSHAGLVR--------EGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQ-------L 565 (784)
Q Consensus 502 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~-------~ 565 (784)
+++.+.. +-|...|..-.-...+.|..+ +++++++.+++. .| +...|+....++.+.|+ +
T Consensus 149 ~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 149 HGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHHH
Confidence 9999753 335666665555555555555 899999999864 34 46678777888888876 7
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHhcCC------CCCcch
Q 044131 566 EKALEFIKGL-AVEP-GPAVWGALLGACMIHKDT--------------------NLARVASEKLFELD------PENVGY 617 (784)
Q Consensus 566 ~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~--------------------~~a~~~~~~~~~l~------p~~~~~ 617 (784)
++++++++++ ...| |...|+-+-+.+...|+. ..-...+..+.... +..+-.
T Consensus 225 ~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 225 QDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 8999998776 3445 778999888888776654 22222222332222 355566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 618 HVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 618 ~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...|+++|...|+.++|.++++.+.+
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 77899999999999999999999864
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.98 E-value=3e-05 Score=78.68 Aligned_cols=93 Identities=6% Similarity=-0.088 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 044131 347 SVLTALSTVYSRLNEMEAARKLFDESS---EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACA 423 (784)
Q Consensus 347 ~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 423 (784)
..+..+...|.+.|++++|...|+... ..+...|..+...|.+.|++++|+..|++..... +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344445555556666666666655432 2244555556666666666666666666555431 123344445555555
Q ss_pred hhCchHHHHHHHHHHHH
Q 044131 424 QLGAISLGKWVHELVKS 440 (784)
Q Consensus 424 ~~~~~~~a~~i~~~~~~ 440 (784)
..|++++|...+..+.+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.97 E-value=3.1e-05 Score=67.65 Aligned_cols=90 Identities=16% Similarity=0.070 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---cchHHHHHHHH
Q 044131 554 CMVDILGRAGQLEKALEFIKGLA-VEPG-P---AVWGALLGACMIHKDTNLARVASEKLFELDPEN---VGYHVLLSNIY 625 (784)
Q Consensus 554 ~lv~~l~r~g~~~eA~~~~~~m~-~~p~-~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y 625 (784)
.+...+.+.|++++|.+.+++.. ..|+ . ..|..+..++...|+++.|...++++++..|++ +..+..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 34555666677777776666541 1222 2 366667777778888888888888888888887 66678888888
Q ss_pred HhcCChHHHHHHHHHHHh
Q 044131 626 SAERDYLQAATVRQVVKK 643 (784)
Q Consensus 626 ~~~g~~~~a~~~~~~m~~ 643 (784)
...|++++|.+.++...+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888776654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.96 E-value=5e-05 Score=83.03 Aligned_cols=160 Identities=12% Similarity=0.092 Sum_probs=107.5
Q ss_pred CCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 044131 461 GNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQ 537 (784)
Q Consensus 461 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 537 (784)
+++++|...|+.... .....|..+...|.+.|++++|+..|++.++. .|+...+ .-++..+ ..
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~-~~ 313 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL-----------SEKESKA-SE 313 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC-----------CHHHHHH-HH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC-----------ChHHHHH-HH
Confidence 344455555544332 24557888888888899999999999888873 2322100 0000000 00
Q ss_pred HhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 538 SMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 538 ~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
.. ....|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|+++.|...++++++++|++.
T Consensus 314 ~~--------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 314 SF--------LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 00 1345667777777888888888777765 2344 567899999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChHHHHHH-HHHHH
Q 044131 616 GYHVLLSNIYSAERDYLQAATV-RQVVK 642 (784)
Q Consensus 616 ~~~~~l~~~y~~~g~~~~a~~~-~~~m~ 642 (784)
..+..++.++...|+++++.+- ++.|-
T Consensus 386 ~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 386 AARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988753 44443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.96 E-value=9e-06 Score=73.19 Aligned_cols=62 Identities=10% Similarity=-0.069 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcC-------CCCCcchH----HHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 582 AVWGALLGACMIHKDTNLARVASEKLFEL-------DPENVGYH----VLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 582 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~l-------~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
..|..+..++...|++++|...+++++++ +|+++..| ..++.+|...|++++|...++...+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37888888888888888888888888888 88888888 8888899999999998888877643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.93 E-value=3.3e-05 Score=68.35 Aligned_cols=99 Identities=15% Similarity=0.019 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHH
Q 044131 512 SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALL 588 (784)
Q Consensus 512 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll 588 (784)
+...+..+...+...|++++|..+|+...+. .|+ ...|..+..++...|++++|...+++.. ..| +...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3444555555555555555555555555432 232 4455556666666666666666665541 233 466788888
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 589 GACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
.++...|+++.|...++++++++|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888888888998888888888877
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.92 E-value=5.5e-05 Score=65.82 Aligned_cols=94 Identities=16% Similarity=0.077 Sum_probs=75.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-------cchHHH
Q 044131 550 EHYACMVDILGRAGQLEKALEFIKGLA-V-EPGPAVWGALLGACMIHKDTNLARVASEKLFELDPEN-------VGYHVL 620 (784)
Q Consensus 550 ~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~-------~~~~~~ 620 (784)
..+..+...+...|++++|...+++.- . +.+..+|..+...+...|+++.|...+++++++.|++ +..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 345566667777777777777776652 2 3356678888888888999999999999999988776 778899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 044131 621 LSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 621 l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++.+|...|++++|.+.++...+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999988765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.87 E-value=6.6e-05 Score=78.40 Aligned_cols=139 Identities=10% Similarity=-0.068 Sum_probs=89.8
Q ss_pred hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC--CCC----------------HHHHHHHHH
Q 044131 425 LGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS--HKS----------------EVTWNTMIS 486 (784)
Q Consensus 425 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~----------------~~~~~~li~ 486 (784)
+.+++.|...+....+.. +.+...+..+...|.+.|++++|...|++.. .|+ ...|..+..
T Consensus 126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 344455544444333221 2246678889999999999999999999875 232 467777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCH
Q 044131 487 GYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQL 565 (784)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~ 565 (784)
+|.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...|+...+. .|+ ...+..+..++.+.|+.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877742 234556666667777777777777777766532 333 33444444444444444
Q ss_pred HHH
Q 044131 566 EKA 568 (784)
Q Consensus 566 ~eA 568 (784)
++|
T Consensus 281 ~~a 283 (336)
T 1p5q_A 281 LAR 283 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.86 E-value=2e-05 Score=70.92 Aligned_cols=112 Identities=13% Similarity=-0.042 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCC
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPS--------G-----VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFK 546 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--------~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 546 (784)
.|......+.+.|++++|+..|++.++ +.|+ . ..|..+..++...|++++|+..|+..++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~----- 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH----- 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 445555566667777777777777766 3333 1 1444444444445555555444444331
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHh-CCCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHH
Q 044131 547 PLAEHYACMVDILGRAGQLEKALEFIKG-LAVEPGPA-VW----GALLGACMIHKDTNLARVASEKLFELDPENVGYHVL 620 (784)
Q Consensus 547 p~~~~~~~lv~~l~r~g~~~eA~~~~~~-m~~~p~~~-~~----~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 620 (784)
+|++ ..+.|+.. .| .....++...|++++|...|+++++++|++.+.+--
T Consensus 86 ------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 86 ------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp ------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred ------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 1111 23478654 88 999999999999999999999999999999887655
Q ss_pred HH
Q 044131 621 LS 622 (784)
Q Consensus 621 l~ 622 (784)
+.
T Consensus 142 ~~ 143 (159)
T 2hr2_A 142 KE 143 (159)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.2e-05 Score=69.43 Aligned_cols=83 Identities=11% Similarity=0.041 Sum_probs=60.6
Q ss_pred hcCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 044131 561 RAGQLEKALEFIKGL-AV---EPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAA 635 (784)
Q Consensus 561 r~g~~~eA~~~~~~m-~~---~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 635 (784)
..|++++|+..+++. .. .|+ ..+|..+..++...|+++.|...++++++++|+++..+..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 356677777777665 23 243 4477788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHh
Q 044131 636 TVRQVVKK 643 (784)
Q Consensus 636 ~~~~~m~~ 643 (784)
..++...+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00015 Score=69.02 Aligned_cols=62 Identities=16% Similarity=-0.069 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 582 AVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 582 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.+|..+..++...|+++.|...++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 68888999999999999999999999999999999999999999999999999999987764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.84 E-value=7.4e-05 Score=81.62 Aligned_cols=123 Identities=10% Similarity=0.042 Sum_probs=82.6
Q ss_pred ccCCHHHHHHHHHHhHHhcC--CCCC----cchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHH
Q 044131 525 HAGLVREGDEIFQSMIHDHG--FKPL----AEHYACMVDILGRAGQLEKALEFIKGL---------AVEPGPA-VWGALL 588 (784)
Q Consensus 525 ~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~~~-~~~~ll 588 (784)
..|++++|..++++.++... +.|+ ..+++.|..+|...|++++|+.++++. +-.|+.. +++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 44555555555544433211 1121 345566666666666666666665543 2344433 788888
Q ss_pred HHHHhcCCHHHHHHHHHHHhc-----CCCCCcch---HHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 044131 589 GACMIHKDTNLARVASEKLFE-----LDPENVGY---HVLLSNIYSAERDYLQAATVRQVVKKRKLA 647 (784)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~~~~-----l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 647 (784)
..|...|++++|+..++++++ +.|++|.+ ..+|...+...|++++|..++..++++-.+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999888886 57777654 457788899999999999999999875533
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.82 E-value=4.8e-05 Score=80.50 Aligned_cols=138 Identities=9% Similarity=0.024 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHH
Q 044131 478 EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMV 556 (784)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv 556 (784)
...|..+...|.+.|++++|++.|++.++. .|+. ...-..++ .. .+.|. ...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~~-------~~---~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDAD-------GA---KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHH-------HG---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChHH-------HH---HHHHHHHHHHHHHH
Confidence 446777778888888888888888887752 1110 00000111 10 12232 56778888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 044131 557 DILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQA 634 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 634 (784)
.+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999998876 4556 5668999999999999999999999999999999999999999999999888877
Q ss_pred HHH
Q 044131 635 ATV 637 (784)
Q Consensus 635 ~~~ 637 (784)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00011 Score=61.86 Aligned_cols=98 Identities=15% Similarity=0.069 Sum_probs=63.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 044131 516 FLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP---GPAVWGALLGAC 591 (784)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~a~ 591 (784)
+..+...+...|++++|..+|+...+.. +.+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 4444455555566666666666555321 122445556666666667777777666654 2333 466788888888
Q ss_pred Hhc-CCHHHHHHHHHHHhcCCCCCc
Q 044131 592 MIH-KDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 592 ~~~-g~~~~a~~~~~~~~~l~p~~~ 615 (784)
... |+.+.|...++++++..|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888 888888888888888888764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0001 Score=79.70 Aligned_cols=162 Identities=8% Similarity=-0.085 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHccCCHHHHHHHHHHhHHhc---CCCCC-cc
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSG-IRPSGV----TFLSVLYACSHAGLVREGDEIFQSMIHDH---GFKPL-AE 550 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~ 550 (784)
++..+...|...|++++|.+++.++...- ..++.. ....+-..+...|..+++.++++...... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667777777788888887777765421 112221 12222233445677888888777665321 22222 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC---CC----c
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGLA-------VEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDP---EN----V 615 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m~-------~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p---~~----~ 615 (784)
.+..+...|...|++++|..++++.. -+|. ..++..++..|...||++.|..++++++...| +. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 66778888888888888888877541 1232 33778888889999999999999988876532 22 2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 616 GYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 616 ~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
..+..++.+|...|+|++|.+.+...
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45667788888899999998876544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0026 Score=65.16 Aligned_cols=210 Identities=12% Similarity=0.027 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCC----------HHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCC--
Q 044131 429 SLGKWVHELVKSRNFESNIYVSTALIDMYAKCGN----------IVEARELFDLMS---HKSEVTWNTMISGYGLHGH-- 493 (784)
Q Consensus 429 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~----------~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-- 493 (784)
++|....+.++..+ +.+..+++.--..+...|. +++++..++.+. .++..+|+--.-.+...|+
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 36777777777654 3344455543333333332 678888888776 4688899988888888884
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhc---------
Q 044131 494 GLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGL-VREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRA--------- 562 (784)
Q Consensus 494 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~--------- 562 (784)
+++++++++++.+.. +-|...|..-...+.+.|. +++++++++.+++. .| +...|+....++.+.
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHHSCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhhhccccccc
Confidence 899999999999864 4466677776667777887 69999999999864 34 456666666666554
Q ss_pred -----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 044131 563 -----GQLEKALEFIKGL-AVEP-GPAVWGALLGACMIH-----------KDTNLARVASEKLFELDPENVGYHVLLSNI 624 (784)
Q Consensus 563 -----g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~-----------g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 624 (784)
+.++++++++++. ...| |..+|+-+-+.+... +-++.+...++++++++|++.-.+..++.+
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~ 281 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 281 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHH
Confidence 5688999998876 2445 778998777776665 457899999999999999985444333322
Q ss_pred H---HhcCChHHHHHHHHHHHh
Q 044131 625 Y---SAERDYLQAATVRQVVKK 643 (784)
Q Consensus 625 y---~~~g~~~~a~~~~~~m~~ 643 (784)
. ...|..+++...+..+.+
T Consensus 282 ~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 282 MRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHhhcccccHHHHHHHHHHHHH
Confidence 2 135666666666666654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00015 Score=62.98 Aligned_cols=115 Identities=6% Similarity=-0.114 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHH
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDI 558 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~ 558 (784)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|..+|+...+.. |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~---------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE---------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc----------
Confidence 355556666666666666666666666532 2234445555555555566666655555554321 10
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 559 LGRAGQLEKALEFIKGLAVEPG----PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 559 l~r~g~~~eA~~~~~~m~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
..++ ..+|..+..++...|+++.|...+++++++.| ++.....+..++.
T Consensus 71 ------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 71 ------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp ------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 0122 44677777788888888888888888888887 4656666655543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00016 Score=63.01 Aligned_cols=102 Identities=11% Similarity=0.042 Sum_probs=64.0
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCCc----chHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHH
Q 044131 520 LYACSHAGLVREGDEIFQSMIHDHGFKPLA----EHYACMVDILGRAGQLEKALEFIKGLA-VEPG----PAVWGALLGA 590 (784)
Q Consensus 520 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~----~~~~~~ll~a 590 (784)
...+...|++++|...|+...+. .|+. ..+..+...+.+.|++++|.+.+++.- ..|+ +.++..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 33444555555555555555533 2221 345555666666666666666665541 2232 4567777788
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 044131 591 CMIHKDTNLARVASEKLFELDPENVGYHVLLSNI 624 (784)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 624 (784)
+...|+.+.|...++++++..|+++........+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 8888999999999999999999877655544443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=6.8e-05 Score=65.00 Aligned_cols=96 Identities=14% Similarity=0.102 Sum_probs=63.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 044131 517 LSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMI 593 (784)
Q Consensus 517 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~ 593 (784)
..+...+...|++++|...|+..++. .| +...|..+..++.+.|++++|+..+++. .+.| +...|..|..++..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34445566667777777777666643 34 3566666777777777777777777665 2445 45688888888888
Q ss_pred cCCHHHHHHHHHHHhcCCCCCc
Q 044131 594 HKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 594 ~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
.|+.++|...++++++++|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8999999999999999888754
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00012 Score=66.34 Aligned_cols=135 Identities=13% Similarity=0.013 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHH
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLHSGIR-PSG----VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYA 553 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 553 (784)
.++..+...|...|++++|+..|++..+.... ++. .++..+...+...|++++|.++++...+...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--------- 80 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR--------- 80 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------
Confidence 35666666777777777777777776652110 111 2344444555555555555555555432110
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC------CCcchHHHHHHHHH
Q 044131 554 CMVDILGRAGQLEKALEFIKGLAVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDP------ENVGYHVLLSNIYS 626 (784)
Q Consensus 554 ~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p------~~~~~~~~l~~~y~ 626 (784)
..+..+ ...++..+...+...|+++.|...+++++++.+ ..+..+..++.+|.
T Consensus 81 --------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 81 --------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp --------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --------------------HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 000000 123556666667777777777777777665422 22346778888888
Q ss_pred hcCChHHHHHHHHHHH
Q 044131 627 AERDYLQAATVRQVVK 642 (784)
Q Consensus 627 ~~g~~~~a~~~~~~m~ 642 (784)
..|++++|.+.++...
T Consensus 141 ~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 8899888888876654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00015 Score=63.45 Aligned_cols=59 Identities=5% Similarity=-0.086 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMI 540 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 540 (784)
+|..+...|.+.|++++|++.|++.++. .| +...|..+..++...|++++|++.|+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 4555666666667777777777766663 33 34455566666666666666666666655
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00054 Score=76.60 Aligned_cols=169 Identities=11% Similarity=-0.037 Sum_probs=133.0
Q ss_pred CCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044131 461 GNIVEARELFDLMS---HKSEVTWNTMISGYGLHGH----------GLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAG 527 (784)
Q Consensus 461 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 527 (784)
..-++|.+.++.+. ..+...|+.--..+...|+ ++++++.++++.+.. +-+..+|..-.-++.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 34466777777765 3456678877777777776 899999999998853 335667777777778888
Q ss_pred --CHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-------
Q 044131 528 --LVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAG-QLEKALEFIKGL-AVEP-GPAVWGALLGACMIH------- 594 (784)
Q Consensus 528 --~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g-~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~------- 594 (784)
+++++.++++.+.+. .|. ...|+.-..++.+.| .++++.++++++ ...| |...|+....++...
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 779999999999854 444 666777777888888 899999999887 3455 677998888877663
Q ss_pred -------CCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 044131 595 -------KDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQ 633 (784)
Q Consensus 595 -------g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 633 (784)
+.++++.+.++++++++|++.++|..+..++...++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999998655
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.72 E-value=7.1e-05 Score=68.64 Aligned_cols=123 Identities=13% Similarity=0.018 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cc
Q 044131 478 EVTWNTMISGYGLHGHGLEALQLFSEMLHSG------IRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AE 550 (784)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~ 550 (784)
...|......+.+.|++++|+..|++.+..- -.|+...+ .. +.|. ..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~------~~~~~~~ 64 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VE------LDRKNIP 64 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HH------HHHTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HH------HHHHHHH
Confidence 3456666667777777777777777766520 01110000 00 0122 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc-chHHHHHHHHH
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENV-GYHVLLSNIYS 626 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~-~~~~~l~~~y~ 626 (784)
.|..+..+|.+.|++++|...+++. .+.| ++..|..+..++...|+++.|...++++++++|+++ .....|..+..
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 6777778888888888888888765 2445 566899999999999999999999999999999988 55556655443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.72 E-value=5.7e-05 Score=78.92 Aligned_cols=146 Identities=11% Similarity=-0.024 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHH
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDI 558 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~ 558 (784)
..|..+...+.+.|++++|+..|++... ..|+... +...|..+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 4566677777788888888888888776 3455432 223333344332221 1256777888
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHH-HhcCChHHHH
Q 044131 559 LGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIY-SAERDYLQAA 635 (784)
Q Consensus 559 l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y-~~~g~~~~a~ 635 (784)
|.+.|++++|...+++. ...| +...|..+..++...|+++.|+..++++++++|+++..+..|..+. ...+..+.+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888765 2344 5668888888888899999999999999999998888888888884 4456677777
Q ss_pred HHHHHHHhC
Q 044131 636 TVRQVVKKR 644 (784)
Q Consensus 636 ~~~~~m~~~ 644 (784)
++++.|-+.
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 777777543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.71 E-value=4.7e-05 Score=79.57 Aligned_cols=112 Identities=8% Similarity=-0.104 Sum_probs=90.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIH 594 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~ 594 (784)
.+..+...+...|++++|...|+..++. .|+.. .+...|+.+++...+.. ..|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~~-------~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVKN-------PCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHHT-------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHHH-------HHHHHHHHHHHHc
Confidence 3555667788899999999999988743 34322 23345556666554432 3788899999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 595 KDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 595 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
|+++.|...++++++++|+++..|..++.+|...|++++|.+.++...+
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.69 E-value=3.5e-05 Score=66.30 Aligned_cols=99 Identities=13% Similarity=0.005 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 044131 527 GLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVA 603 (784)
Q Consensus 527 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~ 603 (784)
|++++|...|++.++...-.|+ ...+..+..+|.+.|++++|.+.+++. ...| +..+|..+..++...|++++|...
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455555555554421000122 445555666666666666666666654 2233 456777788888888888888888
Q ss_pred HHHHhcCCCCCcchHHHHHHHH
Q 044131 604 SEKLFELDPENVGYHVLLSNIY 625 (784)
Q Consensus 604 ~~~~~~l~p~~~~~~~~l~~~y 625 (784)
++++++..|+++........+.
T Consensus 84 ~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 84 LLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp HHHHHHHHCCCHHHHHTHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHH
Confidence 8888888888876554433333
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00016 Score=65.39 Aligned_cols=94 Identities=10% Similarity=-0.027 Sum_probs=70.6
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcCC-----CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMSH-----KS----EVTWNTMISGYGLHGHGLEALQLFSEMLHSGI-RPS---- 512 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd---- 512 (784)
..++..+...|...|++++|...|++..+ .+ ..++..+...|...|++++|++.|++..+... .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678888999999999999999987652 22 24788889999999999999999999876311 111
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 044131 513 GVTFLSVLYACSHAGLVREGDEIFQSMI 540 (784)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 540 (784)
...+..+...+...|++++|.++++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2345566667777788888877777664
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.65 E-value=7.5e-05 Score=63.04 Aligned_cols=89 Identities=12% Similarity=0.023 Sum_probs=71.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------cchHHH
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPEN------VGYHVL 620 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~ 620 (784)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 445666777788888888888888765 2344 57789999999999999999999999999999998 777888
Q ss_pred HHHHHHhcCChHHHHHH
Q 044131 621 LSNIYSAERDYLQAATV 637 (784)
Q Consensus 621 l~~~y~~~g~~~~a~~~ 637 (784)
++.++...|++++|.+.
T Consensus 84 ~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHhHhhhHhH
Confidence 88888888877766543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00021 Score=59.36 Aligned_cols=64 Identities=23% Similarity=0.191 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 580 GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 580 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++.+|..+..++...|+++.|+..++++++++|+++..|..++.+|...|++++|.+.++...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999999887654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00026 Score=74.76 Aligned_cols=112 Identities=10% Similarity=0.007 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 044131 513 GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEP-GPAVWGALLGAC 591 (784)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~ 591 (784)
...+..+...+...|++++|.+.|++.++.. |.. ...-..+++.+ ..| +..+|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGAK------LQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHHH------HHHHHHHHHHHHHHHH
Confidence 3456677777888888888888888776421 100 00011111111 233 355889999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 592 MIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...|++++|+..++++++++|+++..|..++.+|...|++++|.+.++...+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00048 Score=75.19 Aligned_cols=112 Identities=9% Similarity=-0.083 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044131 514 VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMI 593 (784)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~ 593 (784)
..+..+...+...|++++|...|++.++.. |+...+ .-++..+. +. -...+|..+..++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~-----------~~~~~~~~-~~----~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL---EMEYGL-----------SEKESKAS-ES----FLLAAFLNLAMCYLK 329 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---TTCCSC-----------CHHHHHHH-HH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccC-----------ChHHHHHH-HH----HHHHHHHHHHHHHHH
Confidence 345566666677777777777777665432 221100 00111100 00 014688899999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 594 HKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 594 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
.|+++.|...++++++++|+++..|..++.+|...|++++|...++...+.
T Consensus 330 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999988763
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00094 Score=72.07 Aligned_cols=158 Identities=12% Similarity=0.000 Sum_probs=118.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCc
Q 044131 486 SGYGLHGHGLEALQLFSEMLHSGIRPS----------------GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLA 549 (784)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g~~pd----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 549 (784)
..+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+.+..+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345677999999999999887532211 1246788899999999999999999987654433332
Q ss_pred ----chHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC------C
Q 044131 550 ----EHYACMVDILGRAGQLEKALEFIKGL-------AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFEL------D 611 (784)
Q Consensus 550 ----~~~~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l------~ 611 (784)
...+.+...+...|++++|.++++.. ...+. ..++..|...+...|+++.|...+++++.. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23344455566788999999888654 23333 457888999999999999999999988753 2
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 612 PENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 612 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
|.....|..++.+|...|+|++|...++....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 33456888999999999999999999876653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00027 Score=56.95 Aligned_cols=81 Identities=23% Similarity=0.316 Sum_probs=63.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345566667777777777777777665 2233 56688888889999999999999999999999999999999998887
Q ss_pred hcC
Q 044131 627 AER 629 (784)
Q Consensus 627 ~~g 629 (784)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00027 Score=77.11 Aligned_cols=115 Identities=10% Similarity=-0.019 Sum_probs=88.3
Q ss_pred HHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCc---chHH
Q 044131 558 ILGRAGQLEKALEFIKGL---------AVEPGP-AVWGALLGACMIHKDTNLARVASEKLFE-----LDPENV---GYHV 619 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m---------~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~-----l~p~~~---~~~~ 619 (784)
.+...|++++|+.++++. +-.|+. .+++.|..+|...|++++|+..++++++ +.|++| ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456889999999998764 123433 3889999999999999999999999886 456655 4678
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 044131 620 LLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMRE 690 (784)
Q Consensus 620 ~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 690 (784)
.|+.+|...|++++|..++++..+.-.+ +-| ..||.+.++..+|.....+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-----------------THG-PSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------------HhC-CCChHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998776541111 112 4799999999888877766554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00032 Score=59.80 Aligned_cols=77 Identities=13% Similarity=0.019 Sum_probs=64.1
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 567 KALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 567 eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+|.+.+++. ...| +...|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|...++...+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555443 3344 5678889999999999999999999999999999999999999999999999999999887654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00064 Score=55.42 Aligned_cols=69 Identities=13% Similarity=0.049 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044131 578 EPGPAVWGALLGACMIHKD---TNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKL 646 (784)
Q Consensus 578 ~p~~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 646 (784)
++|+..|..+..+....++ .+.|...++++++++|+++....++++++...|++++|...++.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4577788888888876655 79999999999999999999999999999999999999999999987543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00038 Score=74.84 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=77.2
Q ss_pred HHhcCCHHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCc---chHHH
Q 044131 559 LGRAGQLEKALEFIKGL------AVEPG----PAVWGALLGACMIHKDTNLARVASEKLFE-----LDPENV---GYHVL 620 (784)
Q Consensus 559 l~r~g~~~eA~~~~~~m------~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-----l~p~~~---~~~~~ 620 (784)
+.+.|++++|++++++. .+.|+ ..+++.|..+|...|++++|+..++++++ +.|++| ..+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34455556665555433 02222 23677777888888888888888887775 345554 46778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 044131 621 LSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMR 689 (784)
Q Consensus 621 l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 689 (784)
|+.+|...|++++|..++++..+--.+ .-| ..||...+++..|++...+|+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRV-----------------THG-REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHH-----------------hcC-CCChHHHHHHHHHHHHHHHHh
Confidence 999999999999999988766541110 112 479999999999988887775
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00021 Score=64.07 Aligned_cols=84 Identities=14% Similarity=0.068 Sum_probs=63.4
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 044131 560 GRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKD----------TNLARVASEKLFELDPENVGYHVLLSNIYSA 627 (784)
Q Consensus 560 ~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~----------~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 627 (784)
.|.+++++|.+.+++. ...| ++..|..+..++...++ +++|+..++++++++|+++..|..|+++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3445566666666554 2334 45566666666555554 5699999999999999999999999999998
Q ss_pred cC-----------ChHHHHHHHHHHHh
Q 044131 628 ER-----------DYLQAATVRQVVKK 643 (784)
Q Consensus 628 ~g-----------~~~~a~~~~~~m~~ 643 (784)
.| ++++|.+.+++..+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH
Confidence 75 89999999988765
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.001 Score=55.79 Aligned_cols=65 Identities=12% Similarity=-0.098 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 579 PGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 579 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++...|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35668889999999999999999999999999999999999999999999999999999988765
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00042 Score=74.33 Aligned_cols=82 Identities=15% Similarity=0.171 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccE
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLFE-----LDPENV---GYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTL 654 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~~-----l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~ 654 (784)
+++.|..+|...|++++|+..++++++ +.|++| ..|..|+.+|...|++++|..++++..+--.+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~------- 414 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEV------- 414 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-------
Confidence 677777777777888777777777775 345544 46778888999999999999988765541111
Q ss_pred EEECCEEEEEEeCCCCCcchHHHHHHHH
Q 044131 655 IEVGGTPHVFTSGDQLHPQSTAIYAMLE 682 (784)
Q Consensus 655 i~~~~~~~~f~~~d~~h~~~~~i~~~l~ 682 (784)
+-| ..||.+.+++..|+
T Consensus 415 ----------~lG-~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 415 ----------AHG-KDHPYISEIKQEIE 431 (433)
T ss_dssp ----------HTC-TTCHHHHHHHHHHH
T ss_pred ----------HcC-CCChHHHHHHHHHh
Confidence 112 47898888777664
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00018 Score=64.59 Aligned_cols=105 Identities=10% Similarity=-0.050 Sum_probs=59.7
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 044131 489 GLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKA 568 (784)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA 568 (784)
.+.+++++|++.+++..+.. +.+...+..+..++...|.++.+.... +.+++|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al--------------------------~~~~eA 65 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAK--------------------------QMIQEA 65 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------------HHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhH--------------------------hHHHHH
Confidence 34555666666666666632 224445555555555554432111100 013355
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhcCCCCCcchHHH
Q 044131 569 LEFIKGL-AVEPG-PAVWGALLGACMIH-----------KDTNLARVASEKLFELDPENVGYHVL 620 (784)
Q Consensus 569 ~~~~~~m-~~~p~-~~~~~~ll~a~~~~-----------g~~~~a~~~~~~~~~l~p~~~~~~~~ 620 (784)
+..+++. .+.|+ ..+|..|..++... |++++|...++++++++|++..+...
T Consensus 66 i~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 66 ITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5555443 23443 34566666666554 58999999999999999998644433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0038 Score=49.95 Aligned_cols=63 Identities=29% Similarity=0.273 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 581 PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 581 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 457888889999999999999999999999999999999999999999999999999887765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0029 Score=56.00 Aligned_cols=110 Identities=12% Similarity=-0.046 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHh----cCCHHH
Q 044131 492 GHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGR----AGQLEK 567 (784)
Q Consensus 492 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r----~g~~~e 567 (784)
++.++|++.|++..+.| .|+.. +...+...+.+++|.++|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 45677777777777766 33333 445555566677777777766532 234445555555554 455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcC
Q 044131 568 ALEFIKGLAVEPGPAVWGALLGACMI----HKDTNLARVASEKLFEL 610 (784)
Q Consensus 568 A~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~l 610 (784)
|.+++++..-.-++..+..|...+.. .+|.++|...++++.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 55555544222334444444444444 44555555555555444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0014 Score=55.73 Aligned_cols=80 Identities=16% Similarity=0.089 Sum_probs=50.9
Q ss_pred HHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 532 GDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 532 a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
+.+.|+... ...|+ ...+..+...|.+.|++++|...+++. ...| +...|..+..++...|+.+.|...+++++
T Consensus 4 a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444455444 22333 455556666666666666666666554 2233 45577778788888888888888888888
Q ss_pred cCCCCC
Q 044131 609 ELDPEN 614 (784)
Q Consensus 609 ~l~p~~ 614 (784)
++.|++
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 877653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0036 Score=67.03 Aligned_cols=70 Identities=13% Similarity=0.040 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCc
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGL---------AVEPGPA-VWGALLGACMIHKDTNLARVASEKLFE-----LDPENV 615 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~-----l~p~~~ 615 (784)
+++.|..+|...|++++|+.++++. +..|+.. +++.|...|...|++++|+..++++++ +.|++|
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp 421 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHP 421 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444444444444444332 2344433 778888888888888888888888876 578877
Q ss_pred chHHH
Q 044131 616 GYHVL 620 (784)
Q Consensus 616 ~~~~~ 620 (784)
.+-.+
T Consensus 422 ~~~~l 426 (433)
T 3qww_A 422 YISEI 426 (433)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0086 Score=52.85 Aligned_cols=112 Identities=10% Similarity=-0.052 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 044131 527 GLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMI----HKDTNLARV 602 (784)
Q Consensus 527 g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~~a~~ 602 (784)
++.++|.++|++..+. | .|+ .. |..+|...+..++|.+++++.--.-++..+..|...+.. .+|.++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4678999999998754 4 233 33 788888888999999999987545678888889888887 899999999
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 044131 603 ASEKLFELDPENVGYHVLLSNIYSA----ERDYLQAATVRQVVKKRKL 646 (784)
Q Consensus 603 ~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~~ 646 (784)
.++++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999887 567899999999999 8999999999998887664
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.021 Score=58.62 Aligned_cols=137 Identities=13% Similarity=0.038 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHH--cCC---HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHc----cCC----HHHHHHHHHHhHH
Q 044131 476 KSEVTWNTMISGYGL--HGH---GLEALQLFSEMLHSGIRPSGV-TFLSVLYACSH----AGL----VREGDEIFQSMIH 541 (784)
Q Consensus 476 ~~~~~~~~li~~~~~--~g~---~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~----~g~----~~~a~~~~~~m~~ 541 (784)
.+..+|...+.+... .+. ..+|+.+|++.++ ..|+.. .+..+..++.. .+. .......++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 355566666655432 232 4678889998888 467643 33333333320 000 0000011111000
Q ss_pred hcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 542 DHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 542 ~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
......+...|..+.-.+...|++++|...++++. +.|+...|..+...+...|+.++|...+++++.++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 00112223344444443444455555555554442 33444444444444445555555555555555555543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0081 Score=64.39 Aligned_cols=72 Identities=17% Similarity=0.025 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCc
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGL---------AVEPGPA-VWGALLGACMIHKDTNLARVASEKLFE-----LDPENV 615 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~-----l~p~~~ 615 (784)
+++.+..+|...|++++|+.++++. +..|+.. +++.|...+...|++++|+..++++++ +.|++|
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444455555555555555554433 2344433 778888888888888888888888876 578887
Q ss_pred chHHHHH
Q 044131 616 GYHVLLS 622 (784)
Q Consensus 616 ~~~~~l~ 622 (784)
.+-..+.
T Consensus 411 ~~~~~~~ 417 (429)
T 3qwp_A 411 LIEDLIL 417 (429)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.021 Score=63.67 Aligned_cols=146 Identities=14% Similarity=0.069 Sum_probs=116.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCC----------HHHHHHHHHHhHHhcCCCCC-cchHHHHHHH
Q 044131 491 HGHGLEALQLFSEMLHSGIRPSGVT-FLSVLYACSHAGL----------VREGDEIFQSMIHDHGFKPL-AEHYACMVDI 558 (784)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~ 558 (784)
....++|++.++++.+ +.|+..| |+.--.++.+.|. +++++++++.+.+. .|. ...|.--..+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 3446789999999998 5676554 5544445555566 89999999999864 454 5677777778
Q ss_pred HHhcC--CHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-----
Q 044131 559 LGRAG--QLEKALEFIKGLA-VEP-GPAVWGALLGACMIHK-DTNLARVASEKLFELDPENVGYHVLLSNIYSAE----- 628 (784)
Q Consensus 559 l~r~g--~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g-~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~----- 628 (784)
+.+.| ++++|.++++++- ..| +..+|+.-..+....| ..+.+...++++++.+|+|.++|...+.++...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88899 7799999999883 444 6779999999999989 899999999999999999999999999998874
Q ss_pred ---------CChHHHHHHHHHH
Q 044131 629 ---------RDYLQAATVRQVV 641 (784)
Q Consensus 629 ---------g~~~~a~~~~~~m 641 (784)
++++++.+..+..
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~a 218 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNA 218 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHH
Confidence 5567777766544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.076 Score=62.20 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=71.4
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHH
Q 044131 354 TVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKW 433 (784)
Q Consensus 354 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 433 (784)
..+..+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+....
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 34567899999999887764 567899999999999999999999998753 3344444555666666666
Q ss_pred HHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhh
Q 044131 434 VHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDL 472 (784)
Q Consensus 434 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 472 (784)
+-+.+...| -++.-...|.++|++++|.+++.+
T Consensus 729 ~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 729 LAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 655555544 234445557777777777776554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0081 Score=49.47 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 044131 477 SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMI 540 (784)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 540 (784)
+...|..+...|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44566666666666666666666666666632 2234455666666666666666666666554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.01 Score=48.44 Aligned_cols=64 Identities=22% Similarity=0.279 Sum_probs=50.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchH
Q 044131 555 MVDILGRAGQLEKALEFIKGL-AVEP-GPA-VWGALLGACMIHKDTNLARVASEKLFELDPENVGYH 618 (784)
Q Consensus 555 lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 618 (784)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|+++.|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345667778888888888765 2344 556 788888888999999999999999999999988776
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0082 Score=49.02 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=52.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 587 LLGACMIHKDTNLARVASEKLFELDPENVG-YHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
....+...|+++.|...++++++.+|+++. .+..++.+|...|++++|.+.++...+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455677889999999999999999999999 999999999999999999999988765
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.014 Score=60.03 Aligned_cols=131 Identities=14% Similarity=0.104 Sum_probs=90.4
Q ss_pred CCCCHHHHHHHHHHHHc--cC---CHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHH----hcC-------CHHHHHHH
Q 044131 509 IRPSGVTFLSVLYACSH--AG---LVREGDEIFQSMIHDHGFKPL-AEHYACMVDILG----RAG-------QLEKALEF 571 (784)
Q Consensus 509 ~~pd~~t~~~ll~a~~~--~g---~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~----r~g-------~~~eA~~~ 571 (784)
.+.|...|...+.+... .+ ...+|..+|++.++ +.|+ ...|..+.-+|. ..+ .+.+|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 45566667766665433 33 35789999999984 4787 344443332221 111 11223332
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 572 IKGLA-VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 572 ~~~m~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...++ .+.++.+|.++.-.....|+++.|...++++++++|+ ...|..++.++.-.|++++|.+.++....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33333 2446778888888788889999999999999999985 66889999999999999999999876654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0025 Score=66.64 Aligned_cols=432 Identities=10% Similarity=0.075 Sum_probs=228.7
Q ss_pred ChhhHhHHHHHhhCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 044131 40 DLSTVTKLAHRLSDFKATCYARALFFSIPKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAAS 119 (784)
Q Consensus 40 ~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~ 119 (784)
.+.+|+.|-.++.+.|.+.+|..-|-+ ..|...|..+|....+.|.+++-+. .+...++..-.| ..=+.|+-+++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~-yL~MaRk~~ke~--~IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVK-YLQMARKKARES--YVETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHH-HHHTTSTTCCST--TTTHHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHhccc--ccHHHHHHHHH
Confidence 455677777777777777666654433 3344455667777777777777766 555444432223 22345666666
Q ss_pred cCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCC------------------------CCcc
Q 044131 120 ACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPE------------------------KDTV 175 (784)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~------------------------~~~~ 175 (784)
+.+++.+..++.. .|++.-....-+-+...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 6665544333221 23332233333444445555555555554431 2566
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCC-CchhHHHHHHHH
Q 044131 176 LWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFH-DHVYVLTGLVSF 254 (784)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~ 254 (784)
+|-.+-.+|+..+.+.-|--.--.+.- ...-+..++.-|-..|.+++-..+++..+ |++ ....+++-|.-.
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv------hadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaIL 272 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV------HADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAIL 272 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC------CSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc------cHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHH
Confidence 787777778777777666544333321 11223445666666777777666666554 333 467788888888
Q ss_pred HHhcCChHHHHHHHhc----C--CC-----CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcC
Q 044131 255 YSKCGEVERAELLFRD----I--VR-----PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYP 323 (784)
Q Consensus 255 y~~~g~~~~A~~~f~~----~--~~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 323 (784)
|+|-. .++-.+-++. + |+ .....|.-++-.|.+..+++.|... |.+. .|+...-..+.....+
T Consensus 273 YsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdii~K 346 (624)
T 3lvg_A 273 YSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITK 346 (624)
T ss_dssp HHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTTGGG
T ss_pred HHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHHHHH
Confidence 98873 4444333332 2 11 3456788888888888888766532 2111 1111111111222222
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHH-------------HHHHHhcCCHHHHHHHHhhcCCCChh-HHHHHHHHHHh
Q 044131 324 FGHLHLTNCIHSFCLKSGIVSNSSVLTAL-------------STVYSRLNEMEAARKLFDESSEKSLA-SWNAMIAGYTQ 389 (784)
Q Consensus 324 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~L-------------i~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~ 389 (784)
..+++.--+....-+ +-.+...+-| ++++.+.|++.-....+......|.. .-.++-..|..
T Consensus 347 VaN~EiyYKAi~FYL----~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IE 422 (624)
T 3lvg_A 347 VANVELYYRAIQFYL----EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIT 422 (624)
T ss_dssp CSCSHHHHHHHHHHT----TSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH----HhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 233222211111111 1111122222 34555566665555555555555543 33345556666
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHH
Q 044131 390 NGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEAREL 469 (784)
Q Consensus 390 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 469 (784)
..+++.- +. -+.+|-+-.....|.++ .++ .-...-..-...|.|.++++++..+
T Consensus 423 EEDy~~L----R~---------------SId~ydNFD~i~LA~rL----EkH---eL~eFRrIAA~LYkkn~rw~qsi~l 476 (624)
T 3lvg_A 423 EEDYQAL----RT---------------SIDAYDNFDNISLAQRL----EKH---ELIEFRRIAAYLFKGNNRWKQSVEL 476 (624)
T ss_dssp TTCCHHH----HH---------------TTSSCCCSCTTHHHHHH----HTC---SSHHHHHHHHHHHHTTCHHHHHSSC
T ss_pred hhhHHHH----HH---------------HHHHhccccHHHHHHHH----hhC---chHHHHHHHHHHHHhcccHHHHHHH
Confidence 6665421 11 12222222223222222 111 1122222334567888888888776
Q ss_pred HhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 044131 470 FDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEI 535 (784)
Q Consensus 470 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 535 (784)
.++=. .|--.|..-+..|+.+-|.++++-..+.| +...|.+.|..|...=+.|-.+++
T Consensus 477 ~KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 477 CKKDS-----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp SSTTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 54322 12223444567788888888988888866 566788999999888888777765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.19 Score=58.72 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=26.1
Q ss_pred HHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044131 457 YAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEML 505 (784)
Q Consensus 457 y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (784)
...+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 344555555555555442 34556666666666666666666665543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.046 Score=48.32 Aligned_cols=65 Identities=15% Similarity=0.028 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhcCC-C-CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 579 PGPAVWGALLGACMIHK---DTNLARVASEKLFELD-P-ENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 579 p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~l~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++..+.-.+.+++.+.+ ++++|..+++.+++.+ | ++...+..|+-.|.+.|++++|.+.++...+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34445555555555544 4445555555555555 4 3344555555555555555555555555443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.14 Score=45.17 Aligned_cols=39 Identities=18% Similarity=-0.026 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHH
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 621 (784)
.+-.|.-++.+.|+++.|.+.++++++.+|++.....+.
T Consensus 73 ~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 73 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 556677788999999999999999999999987665544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.036 Score=54.61 Aligned_cols=87 Identities=14% Similarity=0.116 Sum_probs=69.1
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhc-CChHH
Q 044131 565 LEKALEFIKGL-AVEPG---PAVWGALLGACMI-----HKDTNLARVASEKLFELDPEN-VGYHVLLSNIYSAE-RDYLQ 633 (784)
Q Consensus 565 ~~eA~~~~~~m-~~~p~---~~~~~~ll~a~~~-----~g~~~~a~~~~~~~~~l~p~~-~~~~~~l~~~y~~~-g~~~~ 633 (784)
..+|...+++. .+.|+ ...|..|...|.. -|+.+.|++.++++++++|+. ...++..+..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45555555554 35666 5578888888877 499999999999999999975 99999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 044131 634 AATVRQVVKKRKLAKAPG 651 (784)
Q Consensus 634 a~~~~~~m~~~~~~k~~g 651 (784)
+.+.+++......+..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999888766664454
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.28 E-value=0.066 Score=44.28 Aligned_cols=70 Identities=19% Similarity=0.095 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHH
Q 044131 553 ACMVDILGRAGQLEKALEFIKGLA---------VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLS 622 (784)
Q Consensus 553 ~~lv~~l~r~g~~~eA~~~~~~m~---------~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 622 (784)
-.|...+.+.|+++.|...++..- -.+...++..|..++.+.|+++.|...++++++++|+++.....+.
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 344455555555555555554320 1234568899999999999999999999999999999987755554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.93 E-value=1.5 Score=37.26 Aligned_cols=140 Identities=11% Similarity=0.010 Sum_probs=93.7
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 044131 489 GLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKA 568 (784)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA 568 (784)
.-.|..++..++..+.... .+..-++.++.-...+-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 3457777777777777653 233445555544444555555666666664433332 34555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 044131 569 LEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLA 647 (784)
Q Consensus 569 ~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 647 (784)
...+-.+. .+....+--+.....+|.-++-..++..++.-+|-+|...+-++++|.+.|+..++.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55444442 223344555677778899999999999877777777899999999999999999999999999999986
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.8 Score=41.48 Aligned_cols=129 Identities=14% Similarity=0.115 Sum_probs=80.6
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 044131 455 DMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDE 534 (784)
Q Consensus 455 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 534 (784)
+.-..+|+++.|.++-+.+ .+...|..+......+|+.+-|.+.|.+... |..++--|.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3456778888888887766 4677888888888888888888888887654 4455555666677655554
Q ss_pred HHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044131 535 IFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKL 607 (784)
Q Consensus 535 ~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 607 (784)
+-+....+ .-++.-...+.-.|+++++.+++.+...-|.+. -..+.+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-------g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-------EDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-------ccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 43332211 123444444556778888888777665322221 1223467777777776654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.13 Score=41.56 Aligned_cols=69 Identities=14% Similarity=0.055 Sum_probs=52.8
Q ss_pred CCcchHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 547 PLAEHYACMVDILGRAGQ---LEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 547 p~~~~~~~lv~~l~r~g~---~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
++.+.+..+..++...+. .++|..++++. ...|+ +..+..|...+...|+++.|...++++++.+|.++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 446677777777765544 68888888776 35564 55777788889999999999999999999999843
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.18 E-value=2.6 Score=38.10 Aligned_cols=104 Identities=11% Similarity=0.101 Sum_probs=70.3
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHH
Q 044131 354 TVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKW 433 (784)
Q Consensus 354 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 433 (784)
+....+|+++.|.++-+.+ .+...|..|.....+.|+++-|.+.|.+... +..++-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445788999998888776 4567899999999999999999998887642 3344444555676666665
Q ss_pred HHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC
Q 044131 434 VHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS 474 (784)
Q Consensus 434 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~ 474 (784)
+-+.....| -++.-...+.-.|+++++.++|.+..
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 555555444 13333444555677777777766544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.70 E-value=13 Score=43.07 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=62.6
Q ss_pred HHHHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH-HHHH---HHHHHHhhhC
Q 044131 354 TVYSRLNEMEAARKLFDESSE--KS-LASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNP-VTVS---SILSACAQLG 426 (784)
Q Consensus 354 ~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~---~ll~a~~~~~ 426 (784)
-.|.-.|+-+....++..+.+ .+ +.-.-++.-|+...|+.+.+..+.+.+... .|+ .-|. .+.-+|+..|
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSC
T ss_pred hhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCC
Confidence 334445555555555443221 11 112222333444556666666666665542 222 1222 1223455566
Q ss_pred chHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC-CCCHHH--HHHHHHHHHHcCCH-HHHHHHHH
Q 044131 427 AISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS-HKSEVT--WNTMISGYGLHGHG-LEALQLFS 502 (784)
Q Consensus 427 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-~~~~~~--~~~li~~~~~~g~~-~~A~~~~~ 502 (784)
+.....+++..+.... ..++.-...+.-+....|+.+.+.++++.+. ..|... --++.-|....|.. .+|+.++.
T Consensus 575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 6655555666555432 1222222222222333455555555555433 222222 22222233333332 45666666
Q ss_pred HHH
Q 044131 503 EML 505 (784)
Q Consensus 503 ~m~ 505 (784)
.+.
T Consensus 654 ~L~ 656 (963)
T 4ady_A 654 PLT 656 (963)
T ss_dssp HHH
T ss_pred HHc
Confidence 665
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.59 E-value=0.0012 Score=69.06 Aligned_cols=360 Identities=11% Similarity=0.088 Sum_probs=203.5
Q ss_pred hhHHHHHhccCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHH
Q 044131 57 TCYARALFFSIPKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIV 136 (784)
Q Consensus 57 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 136 (784)
++.|...-++...| ..|..|-.+..+.+...+|++ .|- -.-|+..|..++.++.+.|.+++-...+..+.+
T Consensus 41 ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAId-syI------kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 41 LDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAID-SYI------KADDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp STTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTT-SSC------CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred cHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHH-HHH------hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34444333333344 469999999999999999988 331 124677899999999999999998888877776
Q ss_pred hCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhH
Q 044131 137 SGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAV 216 (784)
Q Consensus 137 ~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l 216 (784)
. ..++.+=+.|+-+|+|.+++.+-++.+. .||+.--..+-.-|...|.++.|.-+|..+.. |.-+
T Consensus 112 ~--~ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN----------~akL 176 (624)
T 3lvg_A 112 K--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRL 176 (624)
T ss_dssp T--CCSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC----------CTTT
T ss_pred H--hcccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc----------HHHH
Confidence 6 3455666899999999999776544432 36777777788888888888888777765432 1122
Q ss_pred HHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHH
Q 044131 217 LPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSL 296 (784)
Q Consensus 217 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~ 296 (784)
...+..+ |++..|...-++ ..++.+|-.+-.+|+..+.+.-|-
T Consensus 177 AstLV~L-----------------------------------~~yq~AVdaArK--Ans~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 177 ASTLVHL-----------------------------------GEYQAAVDGARK--ANSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp SSSSSSC-----------------------------------SGGGSSTTTTTT--CCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred HHHHHHH-----------------------------------HHHHHHHHHHHh--cCChhHHHHHHHHHhCchHHHHHH
Confidence 2222333 333333221111 145566666666666666665543
Q ss_pred HHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCC-CcchHHHHHHHHHHHhcCCHHHHHHHHh----h
Q 044131 297 RLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGI-VSNSSVLTALSTVYSRLNEMEAARKLFD----E 371 (784)
Q Consensus 297 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~Li~~y~~~g~~~~A~~~f~----~ 371 (784)
-.--.+. +.| .-+..++..|-..|.+++-..+++..+ |+ .....+++-|.-.|+|-. .++-.+.++ +
T Consensus 220 icGLniI---vha--deL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY~-PeKlmEHlklf~sr 291 (624)
T 3lvg_A 220 MCGLHIV---VHA--DELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKFK-PQKMREHLELFWSR 291 (624)
T ss_dssp HHHHHHH---CCS--SCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSS
T ss_pred Hhcchhc---ccH--HHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh
Confidence 3222221 111 223345555666666666555555443 22 245667788888888763 333333333 2
Q ss_pred cCCC-------ChhHHHHHHHHHHhCCChhHHHHHHHHHHhC-----------C---CCCCHHHHHHHHHHHhhhCchHH
Q 044131 372 SSEK-------SLASWNAMIAGYTQNGLTEEAISLFQEMQAS-----------K---VAPNPVTVSSILSACAQLGAISL 430 (784)
Q Consensus 372 ~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----------g---~~pd~~t~~~ll~a~~~~~~~~~ 430 (784)
+.-| ....|.-++-.|.+..+++.|... |... . -.+|...|-..|.-|.... +..
T Consensus 292 iNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~-P~l 367 (624)
T 3lvg_A 292 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK-PLL 367 (624)
T ss_dssp SCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSC-CTT
T ss_pred ccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhC-hHH
Confidence 3222 334699999999998888877532 2211 0 0233344444444443321 111
Q ss_pred HHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHH-HHHHHHHHcCCHH
Q 044131 431 GKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWN-TMISGYGLHGHGL 495 (784)
Q Consensus 431 a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~g~~~ 495 (784)
-..++..+ ...+.. +-.++++.|.|++.-....+......|...-| ++-..|....+++
T Consensus 368 L~DLL~vL-~prlDh-----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~ 427 (624)
T 3lvg_A 368 LNDLLMVL-SPRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQ 427 (624)
T ss_dssp SHHHHHHH-CTTCCS-----TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHhc-cccCCh-----HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHH
Confidence 11111111 111111 13345666677766666666666655554443 3334455555543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.56 Score=46.21 Aligned_cols=112 Identities=11% Similarity=0.072 Sum_probs=74.0
Q ss_pred hcCCHHHHHHHHhhcCCCCH--HHHHHHHHH-HHHc--CC------HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 044131 459 KCGNIVEARELFDLMSHKSE--VTWNTMISG-YGLH--GH------GLEALQLFSEMLHSGIRPS---GVTFLSVLYACS 524 (784)
Q Consensus 459 k~g~~~~A~~~f~~~~~~~~--~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~pd---~~t~~~ll~a~~ 524 (784)
+.|+..+-.+.+.+....|+ ..|..++.+ ++.. |. ..+|...+++.++ +.|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence 34555555555666654443 467777654 3332 32 4567777787777 5676 456777777777
Q ss_pred c-----cCCHHHHHHHHHHhHHhcCCCCC--cchHHHHHHHHHhc-CCHHHHHHHHHhC
Q 044131 525 H-----AGLVREGDEIFQSMIHDHGFKPL--AEHYACMVDILGRA-GQLEKALEFIKGL 575 (784)
Q Consensus 525 ~-----~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~r~-g~~~eA~~~~~~m 575 (784)
. .|+.++|.++|++.++ +.|+ ..++..+.+.|++. |+.++|.+.+++.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7 4888888888888873 4563 67777777777774 7777777777664
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.30 E-value=1.3 Score=37.56 Aligned_cols=75 Identities=13% Similarity=-0.057 Sum_probs=47.2
Q ss_pred CCcchHHHHHHHHHhcCCHHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHH
Q 044131 547 PLAEHYACMVDILGRAGQLEK---ALEFIKGLA-VE-P--GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHV 619 (784)
Q Consensus 547 p~~~~~~~lv~~l~r~g~~~e---A~~~~~~m~-~~-p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 619 (784)
|+..+--.+..+|.++....+ ++.+++..- .. | .....-.|.-++.+.|+++.|.+..+.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 444444444445555554443 445544432 11 2 1123445667899999999999999999999999877665
Q ss_pred HH
Q 044131 620 LL 621 (784)
Q Consensus 620 ~l 621 (784)
+.
T Consensus 113 Lk 114 (126)
T 1nzn_A 113 LE 114 (126)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.26 E-value=0.69 Score=39.22 Aligned_cols=66 Identities=12% Similarity=-0.007 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhcCC-C-CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 578 EPGPAVWGALLGACMIHKDTNL---ARVASEKLFELD-P-ENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 578 ~p~~~~~~~ll~a~~~~g~~~~---a~~~~~~~~~l~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.|+..+--.+.+++.+.++... |+.+++.+++.+ | ..-.....|+-.|.+.|++++|.+..+.+.+
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4777777788888887776555 999999999877 5 4556778899999999999999999988875
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=91.90 E-value=1.2 Score=36.36 Aligned_cols=64 Identities=13% Similarity=-0.044 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC-------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 580 GPAVWGALLGACMIHKDTNLARVASEKLFELD-------PENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 580 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~-------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++.-.-.|...+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|....+...+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44556688899999999999999999998752 34566789999999999999999999887764
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.38 E-value=0.42 Score=54.29 Aligned_cols=55 Identities=16% Similarity=0.048 Sum_probs=50.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
..-|...|+++.|..+++++...-|++-..+..|+.+|...|+|+.|.-....+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3457789999999999999999999999999999999999999999999988774
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.14 E-value=22 Score=39.50 Aligned_cols=263 Identities=10% Similarity=0.041 Sum_probs=142.5
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 044131 345 NSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQ 424 (784)
Q Consensus 345 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 424 (784)
...+-+.-+..+.+.+++......+.. +..+...-.....+....|+..+|....+.+-..| ...+.....++.....
T Consensus 71 ~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~ 148 (618)
T 1qsa_A 71 ARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRA 148 (618)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHH
Confidence 334455566677788889888887776 44455555556677788888888888777776665 2233445556666665
Q ss_pred hCchHHH--HHHHHHHHHcC-----------CCCc-hhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHH---HHHHHHH
Q 044131 425 LGAISLG--KWVHELVKSRN-----------FESN-IYVSTALIDMYAKCGNIVEARELFDLMSHKSEVT---WNTMISG 487 (784)
Q Consensus 425 ~~~~~~a--~~i~~~~~~~g-----------~~~~-~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~---~~~li~~ 487 (784)
.|.+... .+=...+...| ++++ ......++..+.+-..+ ....... .++... ...-+.-
T Consensus 149 ~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~r 224 (618)
T 1qsa_A 149 SGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFAS 224 (618)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHH
Confidence 4443221 11112222221 1111 11223333333222222 2222221 112211 1112223
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcC
Q 044131 488 YGLHGHGLEALQLFSEMLHSGIRPSGVTFLS----VLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAG 563 (784)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~----ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g 563 (784)
+++ .+.+.|..+|....... ..+...... +.......+...++...+...... .++.....-.+....+.|
T Consensus 225 lar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 225 VAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTG 299 (618)
T ss_dssp HHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHT
T ss_pred HHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCC
Confidence 333 37889999998887543 223332222 222333344356677777765422 233323333444455789
Q ss_pred CHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHH
Q 044131 564 QLEKALEFIKGLAVEP-G-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLS 622 (784)
Q Consensus 564 ~~~eA~~~~~~m~~~p-~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 622 (784)
+++.|...|+.|+-.+ + ....--+..+....|+.+.|..+++++.+ + .++|-.|+
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~lA 356 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMVA 356 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHHH
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHHH
Confidence 9999999999997443 2 22223344567778999999999999875 3 35776664
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.04 E-value=3.7 Score=35.40 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=14.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 587 LLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
|.-++.+.|+++.|.+..+.+++.+|+|.
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 33345555555555555555555555543
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=86.28 E-value=12 Score=41.69 Aligned_cols=84 Identities=13% Similarity=0.068 Sum_probs=45.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHh---
Q 044131 383 MIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAK--- 459 (784)
Q Consensus 383 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k--- 459 (784)
....+.-.|+++.|++.+... ...|.+.+...+..+.-++- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 445566689999999987644 35566677666655444332 21111110 01 11 2235678888865
Q ss_pred cCCHHHHHHHHhhcCCCC
Q 044131 460 CGNIVEARELFDLMSHKS 477 (784)
Q Consensus 460 ~g~~~~A~~~f~~~~~~~ 477 (784)
.++..+|.+.|--+.-++
T Consensus 369 ~td~~~Al~Y~~li~l~~ 386 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLNE 386 (661)
T ss_dssp TTCHHHHHHHHHGGGGSC
T ss_pred cCCHHHHHHHHHHHhccC
Confidence 578888888877665333
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=85.59 E-value=10 Score=30.22 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=63.6
Q ss_pred chHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 427 AISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 427 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
..++|..|-+.+...+- ...+.-.-+..+...|++++|..+.+....||...|-++-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777666553 33333334456778999999999999999999999998855 467888888888878887
Q ss_pred CCCCCCHHHHHH
Q 044131 507 SGIRPSGVTFLS 518 (784)
Q Consensus 507 ~g~~pd~~t~~~ 518 (784)
+| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 565555543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=85.34 E-value=32 Score=34.30 Aligned_cols=166 Identities=9% Similarity=0.054 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHH----HHHHHHcCCCCChhhHHhHHHhhcC
Q 044131 248 LTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRL----FRQLLASAERVNSSTIVGLIPVFYP 323 (784)
Q Consensus 248 ~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~~ 323 (784)
+.++..=|.+.+++++|..++.. -...+.+.|+...|-++ .+...+.+++++..+...++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34455667788888888877533 23445667776666554 4555566888888887777776655
Q ss_pred CCChh-HHHHHHHHHH----HhC--CCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhC---CCh
Q 044131 324 FGHLH-LTNCIHSFCL----KSG--IVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQN---GLT 393 (784)
Q Consensus 324 ~~~~~-~a~~i~~~~~----~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~---g~~ 393 (784)
...-+ .-..+...++ +.| -..|+.....+...|.+.|++.+|+..|-.-...|...+..|+.-+.+. |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 33211 1233333333 333 2357888899999999999999999887633222455555555444443 443
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHH
Q 044131 394 EEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVK 439 (784)
Q Consensus 394 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 439 (784)
.++-- +.-..+| -+...+++..|..++....
T Consensus 185 ~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 185 STVAE--------------FFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred chHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 33211 1112222 2335667777777766543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=85.30 E-value=6.1 Score=34.45 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=59.4
Q ss_pred CCCcccHHHHHHHHHcCCCc------hHHHHHHHHHHHcCCCCCChh----hHHhHHHHH---hcccchhHHHHHHHHHH
Q 044131 171 EKDTVLWNSMISGLMKNCCF------QDSIWVFGDMVRNGGTWLDST----SVAAVLPAV---AEVQELRLGMEIQCLGL 237 (784)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~~g~~pd~~----t~~~ll~a~---~~~~~~~~a~~~~~~~~ 237 (784)
..|..+|=..+.-.-+.|++ ++.+++|++... .++|+.. .|..+.--| ...+|++.|++++..++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45777888888888778888 888888888776 3666542 122221111 22367777777777776
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 044131 238 KLGFHDHVYVLTGLVSFYSKCGEVERAELLFRD 270 (784)
Q Consensus 238 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 270 (784)
+..-.. ..++......-.+.|+++.|++++.+
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 652222 55555555555556666666655543
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.96 E-value=9.6 Score=30.32 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=64.3
Q ss_pred chHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 427 AISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 427 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
..++|..|-+.+...+- ...+.-.-+..+...|++++|..+.+....||...|-++-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45667777777666553 33333334456778999999999999999999999988855 577888888888888888
Q ss_pred CCCCCCHHHHHH
Q 044131 507 SGIRPSGVTFLS 518 (784)
Q Consensus 507 ~g~~pd~~t~~~ 518 (784)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 77 565555544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=84.54 E-value=12 Score=32.19 Aligned_cols=68 Identities=12% Similarity=0.080 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHccCC---HHHHHHHHHHhHHhcCCCCC--cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 044131 510 RPSGVTFLSVLYACSHAGL---VREGDEIFQSMIHDHGFKPL--AEHYACMVDILGRAGQLEKALEFIKGL-AVEPG 580 (784)
Q Consensus 510 ~pd~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~ 580 (784)
.|+..|--...-++.++.. +.+|..+++.+.+. .|. .+..-.|.-++.|.|++++|.++.+.+ ..+|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4555554455555555553 45677777777653 232 333344555677777777777777665 35554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=84.34 E-value=19 Score=30.80 Aligned_cols=136 Identities=13% Similarity=0.105 Sum_probs=80.9
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHH
Q 044131 389 QNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARE 468 (784)
Q Consensus 389 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 468 (784)
-.|..++..++..+.... .+..-++.++--.....+-+...++++.+-+ ..| ..+||++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHHH
Confidence 356666666766666543 2333344444333333333333333333221 112 235666666666
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 044131 469 LFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHD 542 (784)
Q Consensus 469 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 542 (784)
.+-.+.. +..-.+..+..+...|.-++-.+++..+.. +.+|++.....+.+||.+.|+..++.+++.+..+.
T Consensus 83 C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 83 CGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 6655543 333445556777788888888888887544 35778888888888888888888888888887654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=84.06 E-value=4.3 Score=34.52 Aligned_cols=71 Identities=11% Similarity=0.065 Sum_probs=38.0
Q ss_pred CCcchHHHHHHHHHhcCCH---HHHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcch
Q 044131 547 PLAEHYACMVDILGRAGQL---EKALEFIKGL-AVEP-G-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGY 617 (784)
Q Consensus 547 p~~~~~~~lv~~l~r~g~~---~eA~~~~~~m-~~~p-~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~ 617 (784)
|+..+--.+..+|.++... .+++.+++.. ...| . ...+--|.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4444444455555555543 2344444443 1223 1 2244455556666777777777777777777765443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=83.87 E-value=7.5 Score=33.90 Aligned_cols=106 Identities=8% Similarity=0.090 Sum_probs=65.9
Q ss_pred CCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHCCCCCCHH----HHHHHHHH---HHccCCHHHHHHHHHHhHH
Q 044131 475 HKSEVTWNTMISGYGLHGHG------LEALQLFSEMLHSGIRPSGV----TFLSVLYA---CSHAGLVREGDEIFQSMIH 541 (784)
Q Consensus 475 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~pd~~----t~~~ll~a---~~~~g~~~~a~~~~~~m~~ 541 (784)
..|..+|-..+.-....|+. ++..++|++.... ++|+.. .|..+.-- +...+++++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 46778888888888888888 7888888888775 667531 11111110 1112445555555554432
Q ss_pred hcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 542 DHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 542 ~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
. -+.-+.+|-....--.++|++..|..++.+++.+.|...
T Consensus 89 ~----------------------------------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 89 N----------------------------------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp H----------------------------------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred H----------------------------------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 1 011155676666666778888888888888888887643
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.30 E-value=15 Score=39.07 Aligned_cols=177 Identities=14% Similarity=0.143 Sum_probs=114.4
Q ss_pred CCHHHHHHHHhhcCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH----Hcc
Q 044131 461 GNIVEARELFDLMSH---------KSEVTWNTMISGYGLHGHGLEALQLFSEMLH-SGIRPSGVTFLSVLYAC----SHA 526 (784)
Q Consensus 461 g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~~t~~~ll~a~----~~~ 526 (784)
|+++.|.+.+-.+.+ ........++..+...|+++...+.+.-+.. .|..+..++ .++..| ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~--~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQ--YMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHH--HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHhcC
Confidence 678888887754431 2345677888999999999999888776654 333333333 233222 222
Q ss_pred CCHHH--HHHHHHHhHHhcCCCCC--------cchHHHHHHHHHhcCCHHHHHHHHHhCC---C--CCC---HHHHHHHH
Q 044131 527 GLVRE--GDEIFQSMIHDHGFKPL--------AEHYACMVDILGRAGQLEKALEFIKGLA---V--EPG---PAVWGALL 588 (784)
Q Consensus 527 g~~~~--a~~~~~~m~~~~~~~p~--------~~~~~~lv~~l~r~g~~~eA~~~~~~m~---~--~p~---~~~~~~ll 588 (784)
...+. -....+.. ..+... ......|.++|...|++.+|.+++..++ . .+. ...+.-.+
T Consensus 108 ~~~d~~~~~~~i~~l---~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 108 KSLDLNTRISVIETI---RVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp CTTHHHHHHHHHHCC---SSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH---HHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 32222 11222111 122221 1223568899999999999999998874 1 111 33667777
Q ss_pred HHHHhcCCHHHHHHHHHHHhc---CCCCC----cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 589 GACMIHKDTNLARVASEKLFE---LDPEN----VGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~~~~---l~p~~----~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
..|...+|+..|..+.+++.. -.|.+ ..+|.+++.++...++|.+|.+.+...-
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 899999999999999988642 12222 2477889999999999999998876653
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=83.07 E-value=41 Score=33.79 Aligned_cols=132 Identities=17% Similarity=0.139 Sum_probs=81.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHH----HHHHHcCCCCChhhHHhHHHhhcCC
Q 044131 249 TGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLF----RQLLASAERVNSSTIVGLIPVFYPF 324 (784)
Q Consensus 249 ~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~~~ 324 (784)
.++.+=|.+.+++++|.+++-. -...+.+.|+...|-++- +-..+.++++|..+...++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3455567888888888887532 234456677766655544 5556678889988888777777665
Q ss_pred CChh-HHHHHHHHH----HHhC--CCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCC
Q 044131 325 GHLH-LTNCIHSFC----LKSG--IVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNG 391 (784)
Q Consensus 325 ~~~~-~a~~i~~~~----~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 391 (784)
..-+ .-..+...+ .+.| -..|+.....+...|.+.+++.+|+..|-.-.+.++..+..|+.-+...+
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 5322 112233333 3334 34577788888888999999999888874322222345555554444443
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=82.54 E-value=32 Score=38.34 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=25.7
Q ss_pred HHHHHhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcC
Q 044131 148 ALVDLYFKFSWVKSARKVFDKMPE---KDTVLWNSMISGLMKN 187 (784)
Q Consensus 148 ~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 187 (784)
++|--+.|||++++|.++.++... .-...+-..+..|+.+
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 466677899999999999887652 1224666777777643
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=81.99 E-value=43 Score=33.31 Aligned_cols=167 Identities=14% Similarity=0.130 Sum_probs=98.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHH----HHHHHhCCCCCCHHHHHHHHHHHhhh
Q 044131 350 TALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISL----FQEMQASKVAPNPVTVSSILSACAQL 425 (784)
Q Consensus 350 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~pd~~t~~~ll~a~~~~ 425 (784)
.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.++++|..+...++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 3444556677777777776542 12334556665554443 44455567888887777777766553
Q ss_pred CchH-HHHHHHHHHH----HcCC--CCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHc---CCHH
Q 044131 426 GAIS-LGKWVHELVK----SRNF--ESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLH---GHGL 495 (784)
Q Consensus 426 ~~~~-~a~~i~~~~~----~~g~--~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~---g~~~ 495 (784)
..-+ .=..+...++ +.|- .-++.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+.+. |...
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 3211 1123333333 3322 237788899999999999999999988743333566666665554444 5444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 044131 496 EALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHD 542 (784)
Q Consensus 496 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 542 (784)
++--..-+ ++| -|.-.|++..|...|+...+.
T Consensus 186 e~dlf~~R--------------aVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 186 TVAEFFSR--------------LVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHH--------------HHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred hHHHHHHH--------------HHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 43222222 122 244678899999988877654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.16 E-value=8.3 Score=34.25 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=13.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC
Q 044131 555 MVDILGRAGQLEKALEFIKGLA 576 (784)
Q Consensus 555 lv~~l~r~g~~~eA~~~~~~m~ 576 (784)
+...|...|+.++|+..++.+|
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHCCHHHHHHHHhcCC
Confidence 4555566666666666666665
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 784 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.003 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 5e-07
Identities = 53/386 (13%), Positives = 109/386 (28%), Gaps = 16/386 (4%)
Query: 255 YSKCGEVERAELLFRDIVR--PDLISC-NAMISGYTCNGKTESSLRLFRQLLASAERVNS 311
+ G+ E AE + R PD + S + + + S + +
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LA 67
Query: 312 STIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDE 371
L V+ G L + L+ + + + + + A +
Sbjct: 68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 127
Query: 372 SSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSAC-AQLGAISL 430
G L + ++A + PN S L G I L
Sbjct: 128 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL 187
Query: 431 GKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDL---MSHKSEVTWNTMISG 487
E + + + + L ++ + A + +S V +
Sbjct: 188 AIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246
Query: 488 YGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVL-YACSHAGLVREGDEIFQSMIHDHGFK 546
Y G A+ + + ++P L A G V E ++ + + +
Sbjct: 247 YYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304
Query: 547 PLAEHYACMVDILGRAGQLEKALE-FIKGLAVEPG-PAVWGALLGACMIHKDTNLARVAS 604
+ + +I G +E+A+ + K L V P A L A +
Sbjct: 305 A--DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362
Query: 605 EKLFELDPENVGYHVLLSNIYSAERD 630
++ + P + + N +D
Sbjct: 363 KEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 2e-05
Identities = 37/298 (12%), Positives = 85/298 (28%), Gaps = 11/298 (3%)
Query: 349 LTALSTVYSRLNEMEAARKLFDESSEK---SLASWNAMIAGYTQNGLTEEAISLFQEMQA 405
L+ + + EAA + + + + + + + Q + + A
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST--LA 59
Query: 406 SKVAPNPVTVSSIL-SACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIV 464
K P S L + + G + + + + A
Sbjct: 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119
Query: 465 EARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVL-YAC 523
+ + + ++ G L G + +P+ S L
Sbjct: 120 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVF 179
Query: 524 SHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALE-FIKGLAVEPGPA 582
+ G + F+ + + Y + ++L A ++A+ +++ L++ P A
Sbjct: 180 NAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237
Query: 583 VWGALLGACMIH-KDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQ 639
V L +LA + EL P + L+N + +A
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 0.003
Identities = 35/331 (10%), Positives = 96/331 (29%), Gaps = 45/331 (13%)
Query: 345 NSSVLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGLTEEAISLFQ 401
N+ VL LS+++ + ++ + + + +++ + Y + G +EAI ++
Sbjct: 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91
Query: 402 EMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCG 461
K ++ + A + ++ + +
Sbjct: 92 HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRL 151
Query: 462 NIVEARELFDLMSH-KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVL 520
+A L + + V W+ + + G A+ F + + + P+ + L
Sbjct: 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT--LDPNFLDAYINL 209
Query: 521 -YACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALE-FIKGLAVE 578
A + + + A + + + G ++ A++ + + + ++
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNH--AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267
Query: 579 PGPAVWGALLGACMIH-----------------------------------KDTNLARVA 603
P L + + A
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327
Query: 604 SEKLFELDPENVGYHVLLSNIYSAERDYLQA 634
K E+ PE H L+++ + +A
Sbjct: 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.6 bits (91), Expect = 0.001
Identities = 29/260 (11%), Positives = 58/260 (22%), Gaps = 5/260 (1%)
Query: 377 LASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHE 436
L + L + + E + T ++L + + +
Sbjct: 73 LQHLETEKSPEESAALVKAELGFL-ESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELEL 131
Query: 437 LVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLE 496
+ + + A + A EL S + N S + L
Sbjct: 132 CARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN--YSSWHYRSCLLP 189
Query: 497 ALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMV 556
L + G P V + + + G V
Sbjct: 190 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSV 249
Query: 557 DILGRAGQLEKAL-EFIKGLAVEPGPAVWGALLGACMIH-KDTNLARVASEKLFELDPEN 614
+ ++ E + + LL + L +DP
Sbjct: 250 EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 309
Query: 615 VGYHVLLSNIYSAERDYLQA 634
Y L + + E L+
Sbjct: 310 AAYLDDLRSKFLLENSVLKM 329
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 784 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.86 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.45 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.42 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.97 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.91 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.85 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.83 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.83 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.81 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.81 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.69 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.69 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.61 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.38 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.37 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.33 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.21 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.2 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.19 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.18 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.18 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.17 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.14 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.08 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.0 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.95 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.9 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.84 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.83 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.83 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.8 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.78 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.78 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.73 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.73 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.6 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.52 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.49 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.38 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.36 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.32 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.31 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.19 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.19 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.01 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.01 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.91 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.84 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.84 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.65 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.49 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.31 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.92 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.59 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.58 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.54 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.26 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 89.13 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 88.92 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 86.82 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.4e-18 Score=184.26 Aligned_cols=371 Identities=13% Similarity=0.101 Sum_probs=269.5
Q ss_pred HHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCch
Q 044131 217 LPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR---PDLISCNAMISGYTCNGKTE 293 (784)
Q Consensus 217 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~ 293 (784)
...+.+.|++++|.+.+..+++.. +.++.++..+...|.+.|++++|...|++..+ .+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 344556777888888877777653 33566677777777777777777777776633 33456777777777777777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHh---
Q 044131 294 SSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFD--- 370 (784)
Q Consensus 294 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~--- 370 (784)
+|+..+............ ........+...+....+.....
T Consensus 85 ~A~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFID------------------------------------GYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp HHHHHHHHHHHHCTTCHH------------------------------------HHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred cccccccccccccccccc------------------------------------cccccccccccccccccccccccccc
Confidence 777777777654322111 11111111112222222211111
Q ss_pred hcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhH
Q 044131 371 ESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVS 450 (784)
Q Consensus 371 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 450 (784)
.........+..........+....+...+.+..... +-+...+..+...+...+..+.|...+..+++.. +.+...+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 206 (388)
T d1w3ba_ 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAY 206 (388)
T ss_dssp HHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred ccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHH
Confidence 1222333444555555666677777777776666542 2345566666677777888888888888877654 4456778
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc
Q 044131 451 TALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHA 526 (784)
Q Consensus 451 ~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~ 526 (784)
..+...|...|++++|...|+... ..+...|..+...|...|++++|+..|++..+. .| +..++..+..++...
T Consensus 207 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 284 (388)
T d1w3ba_ 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 888889999999999999988765 456778888999999999999999999999884 45 456788899999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 044131 527 GLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDTNLARVAS 604 (784)
Q Consensus 527 g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~ 604 (784)
|+.++|.+.|+..... .+.+...+..+...+.+.|++++|.+.+++. ...|+ +.+|..+..++...|++++|+..+
T Consensus 285 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 362 (388)
T d1w3ba_ 285 GSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999988753 2445678888999999999999999999885 46664 668999999999999999999999
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 605 EKLFELDPENVGYHVLLSNIYSAERD 630 (784)
Q Consensus 605 ~~~~~l~p~~~~~~~~l~~~y~~~g~ 630 (784)
+++++++|+++..|..|+++|.+.|+
T Consensus 363 ~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 363 KEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=3.9e-18 Score=180.64 Aligned_cols=321 Identities=12% Similarity=0.092 Sum_probs=250.9
Q ss_pred hHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCC
Q 044131 316 GLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGL 392 (784)
Q Consensus 316 ~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 392 (784)
.+...+...|+++.|...+..+++.. +.+..++..+...|.+.|++++|...+..... .+...+..........+.
T Consensus 38 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (388)
T d1w3ba_ 38 LLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccc
Confidence 33333444444444444444444432 34566788888999999999999999987653 344455556666666677
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhh
Q 044131 393 TEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDL 472 (784)
Q Consensus 393 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 472 (784)
...+............. ...............+....+........... +.+...+..+...+...|+.++|...+++
T Consensus 117 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 194 (388)
T d1w3ba_ 117 MEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp SSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHH
Confidence 77777766666554433 33344445555666777777777777776654 45677888889999999999999999987
Q ss_pred cC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-
Q 044131 473 MS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL- 548 (784)
Q Consensus 473 ~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 548 (784)
.. ..+..+|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...|++..+ +.|+
T Consensus 195 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~ 270 (388)
T d1w3ba_ 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHF 270 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSC
T ss_pred HHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCC
Confidence 65 3467789999999999999999999999998864 45667788888999999999999999999874 3565
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
...+..+...+...|++++|.+.++... .+.+...+..+...+...|++++|...++++++++|+++..+..++.+|.
T Consensus 271 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 350 (388)
T d1w3ba_ 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350 (388)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 6788999999999999999999998762 45577799999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHh
Q 044131 627 AERDYLQAATVRQVVKK 643 (784)
Q Consensus 627 ~~g~~~~a~~~~~~m~~ 643 (784)
..|++++|.+.++...+
T Consensus 351 ~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 351 QQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTTCCHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999987654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2.9e-12 Score=131.71 Aligned_cols=225 Identities=15% Similarity=0.055 Sum_probs=156.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcC
Q 044131 383 MIAGYTQNGLTEEAISLFQEMQASKVAP-NPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCG 461 (784)
Q Consensus 383 li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g 461 (784)
....+.+.|++++|+..|++..+. .| +..++..+..++...|+++.|...+..+++.. +.+...+..+...|...|
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 455667778888888888877764 34 34556666666666666666666666666543 234445555555555555
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHc
Q 044131 462 NIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSG----------------VTFLSVLYACSH 525 (784)
Q Consensus 462 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----------------~t~~~ll~a~~~ 525 (784)
++++|.+.++. .... .|+. ......+..+..
T Consensus 102 ~~~~A~~~~~~-------------------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (323)
T d1fcha_ 102 LQRQACEILRD-------------------------------WLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 148 (323)
T ss_dssp CHHHHHHHHHH-------------------------------HHHT--STTTGGGCC---------------CTTHHHHH
T ss_pred cccccccchhh-------------------------------HHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHH
Confidence 55555555544 3331 1110 011112223344
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 044131 526 AGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVA 603 (784)
Q Consensus 526 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~ 603 (784)
.+..+++.+.|....+...-.++...+..+...+.+.|++++|...+++. ...| +..+|..+...+...|+++.|...
T Consensus 149 ~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 228 (323)
T d1fcha_ 149 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA 228 (323)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHH
Confidence 55677788888877654333344667888889999999999999999875 3445 467899999999999999999999
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 604 SEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 604 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++++++++|+++..+..|+.+|...|++++|.+.++...+
T Consensus 229 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 229 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.7e-12 Score=131.90 Aligned_cols=265 Identities=11% Similarity=0.000 Sum_probs=192.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCc
Q 044131 351 ALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGA 427 (784)
Q Consensus 351 ~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 427 (784)
.....|.+.|++++|...|++..+ .+..+|..+...|...|++++|+..|.+..... +-+...+..+...+...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 356678899999999999998643 356789999999999999999999999988743 2256777888889999999
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044131 428 ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHS 507 (784)
Q Consensus 428 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (784)
++.|.+.+..+....-. ............. ..+.......+..+...+...+|.+.|.+..+.
T Consensus 103 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPA-YAHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTSTT-TGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccc-hHHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999998875311 1111111000000 001111111222334456677888888888764
Q ss_pred CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHH
Q 044131 508 GI-RPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAV 583 (784)
Q Consensus 508 g~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~ 583 (784)
.. .++...+..+...+...|++++|..+|+..... .|+ ...|..+...|.+.|++++|.+.+++. .+.| ++.+
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 242 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence 32 335667788888899999999999999998754 454 678888999999999999999999876 3556 4668
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchH-----------HHHHHHHHhcCChHHHHH
Q 044131 584 WGALLGACMIHKDTNLARVASEKLFELDPENVGYH-----------VLLSNIYSAERDYLQAAT 636 (784)
Q Consensus 584 ~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~-----------~~l~~~y~~~g~~~~a~~ 636 (784)
|..+..+|...|++++|...++++++++|++...+ ..+...+...|+++.+..
T Consensus 243 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 243 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999877643 345666777777765543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=9e-08 Score=98.01 Aligned_cols=257 Identities=12% Similarity=-0.003 Sum_probs=164.5
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCC--C---CchhhHhHHHHH
Q 044131 386 GYTQNGLTEEAISLFQEMQASKVAPN----PVTVSSILSACAQLGAISLGKWVHELVKSRNF--E---SNIYVSTALIDM 456 (784)
Q Consensus 386 ~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--~---~~~~~~~~Li~~ 456 (784)
.+...|++++|+++|++........+ ...+..+..++...|++++|...+..+.+... . .....+..+...
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 34455666666666665554321111 12333444455556666666666655543210 0 112334455566
Q ss_pred HHhcCCHHHHHHHHhhcC-------CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHH
Q 044131 457 YAKCGNIVEARELFDLMS-------HK----SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGI----RPSGVTFLSVLY 521 (784)
Q Consensus 457 y~k~g~~~~A~~~f~~~~-------~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~pd~~t~~~ll~ 521 (784)
|...|++..|...+.... .+ ....+..+...+...|+.+.|...+.+...... .....++.....
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 777777777776665432 11 123455566777888888888888888776322 222345555666
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-----CHHHHHHHHHH
Q 044131 522 ACSHAGLVREGDEIFQSMIHDHGFKPL-----AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-----GPAVWGALLGA 590 (784)
Q Consensus 522 a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-----~~~~~~~ll~a 590 (784)
.+...|...++...+........-... ...+..+...+...|++++|...+++.. ..| ....+..+..+
T Consensus 181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 260 (366)
T d1hz4a_ 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 260 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 777788888888887776543322222 2345566777888999999999988762 222 24467778889
Q ss_pred HHhcCCHHHHHHHHHHHhc------CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 591 CMIHKDTNLARVASEKLFE------LDPENVGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~------l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
+...|+.+.|...+++++. ..|+....+..++.+|...|++++|.+.++...
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 261 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999998873 456667789999999999999999999887653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.91 E-value=6.8e-08 Score=97.55 Aligned_cols=187 Identities=9% Similarity=0.039 Sum_probs=147.5
Q ss_pred CchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--C-C-HHHHHHHHHHHHHcCCHHHHHHHH
Q 044131 426 GAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH--K-S-EVTWNTMISGYGLHGHGLEALQLF 501 (784)
Q Consensus 426 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~ 501 (784)
+..+.+..+++.+++...+.+...+..++..+.+.|+++.|..+|+++.. | + ...|...+....+.|+.++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34678888999888766566777888889999999999999999998752 2 3 447999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----C
Q 044131 502 SEMLHSGIRPSGVTFLSVLY-ACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL----A 576 (784)
Q Consensus 502 ~~m~~~g~~pd~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m----~ 576 (784)
+++.+.+. .+...|..... -+...|+.+.|..+|+.+.+.+ +.+...|...++.+.+.|++++|..+|++. +
T Consensus 158 ~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 99988643 33334443333 3445689999999999998653 234678889999999999999999999875 3
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 577 VEPG--PAVWGALLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 577 ~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
..|+ ...|...+.--..+|+.+.+..+.+++.++-|++.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 4443 55899999988899999999999999988888764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=1.8e-07 Score=95.64 Aligned_cols=286 Identities=8% Similarity=-0.082 Sum_probs=179.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC----CCC----hhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CCC----HHHHHHH
Q 044131 352 LSTVYSRLNEMEAARKLFDESS----EKS----LASWNAMIAGYTQNGLTEEAISLFQEMQASKV-APN----PVTVSSI 418 (784)
Q Consensus 352 Li~~y~~~g~~~~A~~~f~~~~----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~l 418 (784)
....+...|++++|.++|++.. ..+ ...++.+...|...|++++|+..|++...... .++ ..++..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 3455566777777777776532 111 23566666777777888888887777654210 111 2334445
Q ss_pred HHHHhhhCchHHHHHHHHHHHHc----CCCC---chhhHhHHHHHHHhcCCHHHHHHHHhhcCC--------CCHHHHHH
Q 044131 419 LSACAQLGAISLGKWVHELVKSR----NFES---NIYVSTALIDMYAKCGNIVEARELFDLMSH--------KSEVTWNT 483 (784)
Q Consensus 419 l~a~~~~~~~~~a~~i~~~~~~~----g~~~---~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--------~~~~~~~~ 483 (784)
...+...|++..+...+...... +... ....+..+...|...|+++.|...+..... ....++..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 55666777777777777665431 1111 123455667778888888888888766531 23445666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC--cchHHHH
Q 044131 484 MISGYGLHGHGLEALQLFSEMLHS--GIRPS----GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL--AEHYACM 555 (784)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~--g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l 555 (784)
+...+...|+..++...+.+.... ..... ...+..+...+...|+.++|..+++...+...-.+. ...+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 677778888888888888776542 11111 123455566778889999999998876532111111 2345567
Q ss_pred HHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc---------chH
Q 044131 556 VDILGRAGQLEKALEFIKGL-------AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENV---------GYH 618 (784)
Q Consensus 556 v~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~---------~~~ 618 (784)
...+...|++++|...+++. ...|+ ..+|..+..++...|+.++|...+++++++.+... ...
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~ 337 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 337 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHH
Confidence 88889999999998888764 33444 33778888899999999999999999988654221 122
Q ss_pred HHHHHHHHhcCChHHHHHH
Q 044131 619 VLLSNIYSAERDYLQAATV 637 (784)
Q Consensus 619 ~~l~~~y~~~g~~~~a~~~ 637 (784)
..+...+...++.+++.+-
T Consensus 338 ~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 338 AQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHhcCCChHHHHH
Confidence 2333445556677766543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=1.4e-07 Score=92.26 Aligned_cols=220 Identities=12% Similarity=-0.043 Sum_probs=137.5
Q ss_pred hhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHH
Q 044131 393 TEEAISLFQEMQASKVAPN---PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEAREL 469 (784)
Q Consensus 393 ~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 469 (784)
.+.|+.-+.+........+ ..++..+..++.+.|++++|...+..+++.. +.++.+++.+...|.+.|++++|...
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 4455555555554321111 1345555566677777777777777777654 45677788888888888888888888
Q ss_pred HhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCC
Q 044131 470 FDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFK 546 (784)
Q Consensus 470 f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 546 (784)
|+++. ..+..+|..+...|...|++++|++.|++..+.. +.+......+..++...+..+....+...... ..
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 169 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SD 169 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SC
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cc
Confidence 88776 2356688888888889999999999999888753 23344444444455555555555555554432 22
Q ss_pred CCcchHHHHHHHHHhcCC----HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchH
Q 044131 547 PLAEHYACMVDILGRAGQ----LEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYH 618 (784)
Q Consensus 547 p~~~~~~~lv~~l~r~g~----~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 618 (784)
+....++. +..+..... .+++...+... ...|+ ..+|..|...+...|+++.|...++++++.+|++...|
T Consensus 170 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 170 KEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp CCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred hhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 33333332 222222212 22222222111 12233 33777888899999999999999999999999876544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=6.9e-08 Score=97.68 Aligned_cols=208 Identities=12% Similarity=0.139 Sum_probs=125.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHH
Q 044131 379 SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYA 458 (784)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 458 (784)
.++.+-..+.+.+.+++|++++++++.. .|+ +..+|+.....+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~----------------------------------~~~a~~~r~~~l~ 88 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAA----------------------------------NYTVWHFRRVLLK 88 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCC----------------------------------ChHHHHHHHHHHH
Confidence 4555555666666666666666666653 343 3333444444444
Q ss_pred hcC-CHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 044131 459 KCG-NIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDE 534 (784)
Q Consensus 459 k~g-~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 534 (784)
+.| ++++|...++... ..+..+|+.+...+...|++++|++.|+++.+.. +-+...|..+...+.+.|++++|.+
T Consensus 89 ~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~ 167 (315)
T d2h6fa1 89 SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQ 167 (315)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred HhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHH
Confidence 443 2555555555443 2355566666666666666667777777666632 2245566666666666777777777
Q ss_pred HHHHhHHhcCCCCC-cchHHHHHHHHHhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044131 535 IFQSMIHDHGFKPL-AEHYACMVDILGRAGQ------LEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASE 605 (784)
Q Consensus 535 ~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~------~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~ 605 (784)
.|+.+++ +.|+ ...|+.+..++.+.|. +++|.+.+.+. ...| +...|..+...+.. ...+++...++
T Consensus 168 ~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~ 243 (315)
T d2h6fa1 168 YVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLN 243 (315)
T ss_dssp HHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHH
T ss_pred HHHHHHH---HCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHH
Confidence 7776663 2443 4455555555555444 56777777654 3445 57788888777654 44678888999
Q ss_pred HHhcCCCCCcch--HHHHHHHHHh
Q 044131 606 KLFELDPENVGY--HVLLSNIYSA 627 (784)
Q Consensus 606 ~~~~l~p~~~~~--~~~l~~~y~~ 627 (784)
++.+++|+.... +..++.+|..
T Consensus 244 ~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 244 QLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcCCHHHHHHHHHHHHH
Confidence 998888876544 4456677654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=2.5e-08 Score=101.02 Aligned_cols=192 Identities=8% Similarity=0.000 Sum_probs=158.1
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHG-HGLEALQLFSEMLHSGIRPSGVTFLSVLYA 522 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 522 (784)
..+++-+...+.+.+..++|+..++++. ..+...|+....++...| ++++|+..+++..+.. +-+..+|..+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 3456667777889999999999999887 346779999999988877 4899999999998842 3356788888999
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKD--- 596 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~--- 596 (784)
+...|++++|+++|+.+.+ +.|+ ...|..+..++.+.|++++|++.++++ .+.| +...|+.+.......+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~---~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHhhccHHHHHHHHhhhhh---hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccch
Confidence 9999999999999999985 3565 788999999999999999999999887 3556 57789888777665554
Q ss_pred ---HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 597 ---TNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 597 ---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.+.|...++++++++|++...+..++.++...| .+++.+..+...+
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 678999999999999999999999999987665 5677777666544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.81 E-value=1.4e-08 Score=104.09 Aligned_cols=266 Identities=8% Similarity=-0.096 Sum_probs=186.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHH----------HHhCCChhHHHHHHHHHHhCCCCC-CHHHHHH
Q 044131 352 LSTVYSRLNEMEAARKLFDESSE--K-SLASWNAMIAG----------YTQNGLTEEAISLFQEMQASKVAP-NPVTVSS 417 (784)
Q Consensus 352 Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~----------~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ 417 (784)
++....+.+..++|.++++.... | +...|+..-.. +...|+.++|+.+|+..... .| +...+..
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~pk~~~~~~~ 112 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHH 112 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 33333344444677777776542 2 33455543322 22344577888888888764 34 4455555
Q ss_pred HHHHHhhhC--chHHHHHHHHHHHHcCCCCchhhHh-HHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHc
Q 044131 418 ILSACAQLG--AISLGKWVHELVKSRNFESNIYVST-ALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLH 491 (784)
Q Consensus 418 ll~a~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~-~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 491 (784)
...++...+ +.+.+...+..+.+.. +.+...+. .+...+...|..++|...++.... .+..+|+.+...+.+.
T Consensus 113 ~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~ 191 (334)
T d1dcea1 113 RCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (334)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 555555554 4788888888888765 33444443 445677888999999999998874 4678999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 044131 492 GHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEF 571 (784)
Q Consensus 492 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~ 571 (784)
|++++|...+++..+. .|+.. .....+...+..+++...+...... -.++...+..+...+...|+.++|.+.
T Consensus 192 ~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 264 (334)
T d1dcea1 192 HPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCKE 264 (334)
T ss_dssp SCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhHHHHHHH
Confidence 9998887766655442 23322 2333455567777888888877642 234456666777888889999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 044131 572 IKGL-AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSA 627 (784)
Q Consensus 572 ~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 627 (784)
+.+. +..|+ ..+|..+..++...|+.++|...++++++++|++..+|..|+..+..
T Consensus 265 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 265 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 8775 45664 45888899999999999999999999999999999999888877663
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.69 E-value=7.4e-08 Score=94.31 Aligned_cols=209 Identities=11% Similarity=0.006 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHcCC-CC--chhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044131 429 SLGKWVHELVKSRNF-ES--NIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFS 502 (784)
Q Consensus 429 ~~a~~i~~~~~~~g~-~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (784)
+.+..-+.++....- .+ ...++..+...|.+.|++++|...|++.. ..+..+|+.+..+|.+.|++++|++.|+
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 95 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 95 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence 344444455544321 11 24466777889999999999999999876 3578899999999999999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC
Q 044131 503 EMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VEP 579 (784)
Q Consensus 503 ~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p 579 (784)
+..+. .| +..++..+..++...|+.++|.+.|+...+. .|+ ......+...+.+.+..+.+..+..... ..+
T Consensus 96 ~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 96 SVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred HHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 99984 45 4567888899999999999999999998854 344 3333344445555565555544443331 122
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 580 GPAVWGALLGACMI----HKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 580 ~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+...+.. +..+.. .+..+.+...+.......|+.+..|..|+.+|...|++++|.+.++....
T Consensus 171 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 171 EQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp CSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2222222 122211 12234444444444456677777889999999999999999999998765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.69 E-value=1.2e-06 Score=87.95 Aligned_cols=182 Identities=10% Similarity=-0.020 Sum_probs=143.7
Q ss_pred hcCCHHHHHHHHhhcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 044131 459 KCGNIVEARELFDLMS----HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDE 534 (784)
Q Consensus 459 k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 534 (784)
..+..++|..+|++.. ..+...|...+..+...|+.++|..+|+++++.........|...+..+.+.|..++|.+
T Consensus 76 ~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHH
Confidence 3445678888888753 356778999999999999999999999999975332334568889999999999999999
Q ss_pred HHHHhHHhcCCCCC-cchHHHHHHHH-HhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 044131 535 IFQSMIHDHGFKPL-AEHYACMVDIL-GRAGQLEKALEFIKGLA--VEPGPAVWGALLGACMIHKDTNLARVASEKLFEL 610 (784)
Q Consensus 535 ~~~~m~~~~~~~p~-~~~~~~lv~~l-~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l 610 (784)
+|+.+.+ ..|+ ...|...+... ...|+.+.|..+++++- .+.+...|..++......|+++.|+.+++++++.
T Consensus 156 i~~~al~---~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 156 IFKKARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHT---STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHH---hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 9999874 3443 44555444443 34689999999998873 3446779999999999999999999999999998
Q ss_pred CCCCcc----hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 611 DPENVG----YHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 611 ~p~~~~----~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.|.++. .+......-...|+.+.+.++.+.+.+
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 776654 556666666788999999999988765
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.61 E-value=2e-08 Score=102.99 Aligned_cols=253 Identities=8% Similarity=-0.071 Sum_probs=180.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH-H---HHHHH-------HhhhCchHHHHHHHHHHHHcCCCCchhh
Q 044131 381 NAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTV-S---SILSA-------CAQLGAISLGKWVHELVKSRNFESNIYV 449 (784)
Q Consensus 381 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~---~ll~a-------~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 449 (784)
..++......+..++|++++.+.... .|+..+. + .++.. ....+.++++...++.+.+.. +.+...
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~ 109 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT 109 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHH
Confidence 33444333444568999999999874 6775543 1 22222 223455778888888888765 556667
Q ss_pred HhHHHHHHHhcC--CHHHHHHHHhhcC---CCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044131 450 STALIDMYAKCG--NIVEARELFDLMS---HKSEVTWNTMI-SGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYAC 523 (784)
Q Consensus 450 ~~~Li~~y~k~g--~~~~A~~~f~~~~---~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 523 (784)
+..+...+...+ +.++|...+.++. .++...|...+ ..+...|..++|+..++++.+.. +-|...|..+..++
T Consensus 110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~ 188 (334)
T d1dcea1 110 WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLL 188 (334)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 777766666665 4889999888875 34666765544 66777899999999999888753 33566788888888
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044131 524 SHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL--AVEPGPAVWGALLGACMIHKDTNLAR 601 (784)
Q Consensus 524 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~ 601 (784)
...|++++|...++...+. .|+ ...+...+...+..++|...+.+. ..+++...+..+...+...|+.+.|.
T Consensus 189 ~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~ 262 (334)
T d1dcea1 189 PQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESC 262 (334)
T ss_dssp HHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHH
Confidence 8888888776666554422 122 122334455667777777766554 22334446667777888889999999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 602 VASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 602 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
..+.++.+.+|++...+..++.+|...|++++|.+.++...+
T Consensus 263 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 263 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=1.3e-06 Score=73.56 Aligned_cols=104 Identities=14% Similarity=0.078 Sum_probs=74.5
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 044131 520 LYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKD 596 (784)
Q Consensus 520 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~ 596 (784)
...+...|++++|..+|+..++. .|+ ...|..+..+|...|++++|++.+++. .+.| ++..|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 34566677777777777776643 343 556777777777777777777777665 2333 56678888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 597 TNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 597 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
++.|+..++++++++|+++..+..+.++-+
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 888888888888888888888777776644
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=5.8e-06 Score=76.25 Aligned_cols=140 Identities=10% Similarity=-0.014 Sum_probs=104.5
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 044131 454 IDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGD 533 (784)
Q Consensus 454 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 533 (784)
...+...|+++.|++.|.++..++...|..+..+|...|++++|++.|++.++.. +-+...|..+..++.+.|+.++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 3456788999999999999988999999999999999999999999999999853 335567888888999999999999
Q ss_pred HHHHHhHHhcCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 044131 534 EIFQSMIHDHGFKPLAE-HYACMVDILGRAGQLEKALEFIKGLAVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELD 611 (784)
Q Consensus 534 ~~~~~m~~~~~~~p~~~-~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~ 611 (784)
+.|++.+.. .+++.. .|. ..| +..+++ ..++..+..++...|+++.|...+++++++.
T Consensus 91 ~~~~kAl~~--~~~n~~~~~~-------~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLIDYK-------ILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHT--TTTCSEEECG-------GGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHh--CccCchHHHH-------Hhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999887642 122210 010 000 011222 2356667778888899999999999998888
Q ss_pred CCC
Q 044131 612 PEN 614 (784)
Q Consensus 612 p~~ 614 (784)
|+.
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 875
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1.5e-06 Score=73.08 Aligned_cols=89 Identities=13% Similarity=0.053 Sum_probs=81.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 044131 555 MVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYL 632 (784)
Q Consensus 555 lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 632 (784)
-...+.+.|++++|+..|++. ...| ++..|..+..++...|+++.|+..++++++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 356788999999999999886 3445 67789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 044131 633 QAATVRQVVKK 643 (784)
Q Consensus 633 ~a~~~~~~m~~ 643 (784)
+|...++...+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999988775
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.33 E-value=1.2e-06 Score=81.56 Aligned_cols=105 Identities=15% Similarity=0.019 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHH
Q 044131 511 PSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPG-PAVWGAL 587 (784)
Q Consensus 511 pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~l 587 (784)
|+...+......+...|++++|...|+..++. .|+ ...|..+..+|.+.|++++|+..+++. .+.|+ ..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 45555555555666666666666666555432 233 444555555555555555555555443 23442 3355555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCcchH
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPENVGYH 618 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 618 (784)
..++...|+++.|...++++++++|++...+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~ 109 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNF 109 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 5555555555555555555555555444333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.21 E-value=6.9e-06 Score=81.47 Aligned_cols=188 Identities=9% Similarity=-0.041 Sum_probs=126.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-----CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CC--CHHHHHH
Q 044131 453 LIDMYAKCGNIVEARELFDLMSH-----KS----EVTWNTMISGYGLHGHGLEALQLFSEMLHSGI---RP--SGVTFLS 518 (784)
Q Consensus 453 Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--d~~t~~~ 518 (784)
..+.|..+|++++|.+.|.+..+ .+ ..+|+.+..+|.+.|++++|++.+++..+.-. .+ ...++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 35678888999998888877642 12 34788889999999999999999998765211 11 1345666
Q ss_pred HHHHHH-ccCCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-------CH-HHH
Q 044131 519 VLYACS-HAGLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-------GP-AVW 584 (784)
Q Consensus 519 ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-------~~-~~~ 584 (784)
+...|. ..|++++|.++|+...+-+....+ ..++..+...|...|++++|.+.+++.. ..| .. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 666674 469999999999987643221111 4457888999999999999999998752 111 11 234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcch--H---HHHHHHHHh--cCChHHHHHHHHH
Q 044131 585 GALLGACMIHKDTNLARVASEKLFELDPENVGY--H---VLLSNIYSA--ERDYLQAATVRQV 640 (784)
Q Consensus 585 ~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~--~---~~l~~~y~~--~g~~~~a~~~~~~ 640 (784)
...+-.+...|+.+.|...++++.+++|..+.. + ..|...|.. .+++++|.+.++.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445556677899999999999999999864432 2 334445544 3568888777653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.20 E-value=1.9e-06 Score=71.69 Aligned_cols=89 Identities=18% Similarity=0.137 Sum_probs=79.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 553 ACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERD 630 (784)
Q Consensus 553 ~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 630 (784)
-.+...+.+.|++++|...+++. ...| ++.+|..+..++...|+++.|+..++++++++|+++..+..|+.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34567788899999999999886 3556 577999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH
Q 044131 631 YLQAATVRQVV 641 (784)
Q Consensus 631 ~~~a~~~~~~m 641 (784)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988753
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=7.4e-06 Score=72.98 Aligned_cols=88 Identities=17% Similarity=0.098 Sum_probs=67.3
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 044131 556 VDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQ 633 (784)
Q Consensus 556 v~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 633 (784)
...|.+.|++++|+..|++. .+.| +...|..+...+...|+++.|...++++++++|+++.+|..++.+|...|++++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHH
Confidence 44566777777777777765 2344 466777888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHh
Q 044131 634 AATVRQVVKK 643 (784)
Q Consensus 634 a~~~~~~m~~ 643 (784)
|.+.++....
T Consensus 97 A~~~~~~a~~ 106 (159)
T d1a17a_ 97 ALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887776654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=4.3e-06 Score=77.18 Aligned_cols=87 Identities=13% Similarity=0.009 Sum_probs=80.0
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 044131 556 VDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAA 635 (784)
Q Consensus 556 v~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 635 (784)
...+...|++++|++.|+++. +|++.+|..+..++...|+++.|+..++++++++|+++..|..++.+|...|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 445778999999999999875 7888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 044131 636 TVRQVVKK 643 (784)
Q Consensus 636 ~~~~~m~~ 643 (784)
+.+++..+
T Consensus 91 ~~~~kAl~ 98 (192)
T d1hh8a_ 91 KDLKEALI 98 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98877654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=1.8e-06 Score=72.85 Aligned_cols=106 Identities=16% Similarity=-0.008 Sum_probs=82.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 044131 518 SVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQL---EKALEFIKGL-AVEPGP---AVWGALLG 589 (784)
Q Consensus 518 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~---~eA~~~~~~m-~~~p~~---~~~~~ll~ 589 (784)
.+++.+...+++++|.+.|+...+. .|+ ..++..+..+|.+.++. ++|+.++++. ...|++ .+|..|..
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 5677777788888888888888743 454 67777788888776544 4688888876 344543 37888999
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 590 ACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 590 a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
+|...|+++.|+..++++++++|++..+..++..+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999888877766644
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.17 E-value=1.7e-06 Score=80.55 Aligned_cols=95 Identities=16% Similarity=0.090 Sum_probs=54.9
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 044131 547 PLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNI 624 (784)
Q Consensus 547 p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 624 (784)
|+...+......|.+.|++++|+..|++. ...| ++..|..+..++...|+++.|...++++++++|+++..|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44444445555566666666666666543 2233 344566666666666666666666666666666666666666666
Q ss_pred HHhcCChHHHHHHHHHH
Q 044131 625 YSAERDYLQAATVRQVV 641 (784)
Q Consensus 625 y~~~g~~~~a~~~~~~m 641 (784)
|...|++++|...++..
T Consensus 82 ~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 82 QLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 66666666666555543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=8.2e-06 Score=72.67 Aligned_cols=115 Identities=11% Similarity=-0.009 Sum_probs=87.6
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 044131 520 LYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKD 596 (784)
Q Consensus 520 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~ 596 (784)
...|...|++++|...|+..++. .|+ ...|..+..+|...|++++|.+.+++. .+.| +..+|..+..++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 34566777777777777777643 454 667777888888888888888888776 3455 45699999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHH--hcCChHHHHHH
Q 044131 597 TNLARVASEKLFELDPENVGYHVLLSNIYS--AERDYLQAATV 637 (784)
Q Consensus 597 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~--~~g~~~~a~~~ 637 (784)
+++|...++++++++|+++..+..+..+.. ..+.++++...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998888776643 34446665543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=1.2e-05 Score=72.32 Aligned_cols=133 Identities=15% Similarity=0.059 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDIL 559 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l 559 (784)
.+......+.+.|++++|+..|++.+..- |.. .+..+.-......+. ...|..+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~------------~~~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYE------------SSFSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTC------------CCCCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhc------------cccchHHHhhhchhH--------HHHHHHHHHHH
Confidence 44555667777888888888888776521 100 000000001111111 12566788889
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 044131 560 GRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQA 634 (784)
Q Consensus 560 ~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 634 (784)
.+.|++++|+..+++. .+.| ++.+|..+..++...|+++.|...++++++++|+++.....++.++...+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998775 3566 6779999999999999999999999999999999999999999998777666554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=3.5e-05 Score=69.23 Aligned_cols=110 Identities=15% Similarity=-0.003 Sum_probs=81.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIH 594 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~ 594 (784)
.+......+...|++++|...|+..++-..-.+..... .......+ ...+|..+..+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~-----------~~~~~~~~--------~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE-----------EAQKAQAL--------RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH-----------HHHHHHHH--------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchH-----------HHhhhchh--------HHHHHHHHHHHHHhh
Confidence 34455567778888888888888776543222221110 00000000 123677788889999
Q ss_pred CCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 595 KDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 595 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
|+++.|+..++++++++|+++.++..++.+|...|++++|...++...+
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998765
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.95 E-value=4.5e-05 Score=75.37 Aligned_cols=171 Identities=16% Similarity=0.045 Sum_probs=128.8
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCHHHHHHHH
Q 044131 462 NIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHS----GIRPS-GVTFLSVLYACSHAGLVREGDEIF 536 (784)
Q Consensus 462 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~ 536 (784)
++++|.++|.+ ....|...|++++|++.|.+..+. +-+|+ ..+|..+...|...|++++|.+.+
T Consensus 32 ~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 45677766554 567899999999999999998762 21222 247888899999999999999999
Q ss_pred HHhHHhcCCCCC----cchHHHHHHHHH-hcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 044131 537 QSMIHDHGFKPL----AEHYACMVDILG-RAGQLEKALEFIKGLA----VEPG----PAVWGALLGACMIHKDTNLARVA 603 (784)
Q Consensus 537 ~~m~~~~~~~p~----~~~~~~lv~~l~-r~g~~~eA~~~~~~m~----~~p~----~~~~~~ll~a~~~~g~~~~a~~~ 603 (784)
+...+-+.-..+ ...+..+...|- ..|++++|.+++++.. ...+ ..++..+...+...|+++.|...
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~ 180 (290)
T d1qqea_ 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence 987643322222 345566666664 4699999999997651 1111 33688889999999999999999
Q ss_pred HHHHhcCCCCCcc-------hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 604 SEKLFELDPENVG-------YHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 604 ~~~~~~l~p~~~~-------~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++++.+..|.++. .+..++.+|...|+++.|.+.++...+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999998887653 345677788889999999999887665
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.90 E-value=7e-05 Score=65.81 Aligned_cols=132 Identities=14% Similarity=-0.023 Sum_probs=89.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIH 594 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~ 594 (784)
.+..-...+.+.|++++|...|+..++-....+.... +....... .....+|..+..++...
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~--------------~~~~~~~~----~~~~~~~~Nla~~~~~l 80 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD--------------QILLDKKK----NIEISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC--------------HHHHHHHH----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhh--------------HHHHHhhh----hHHHHHHhhHHHHHHHh
Confidence 3445556677778888888777776642211111000 00000000 01124677888889999
Q ss_pred CCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcch
Q 044131 595 KDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQS 674 (784)
Q Consensus 595 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~ 674 (784)
|+++.|...++++++++|+++..|..++.+|...|+|++|...++...+ ..|..
T Consensus 81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--------------------------l~P~n 134 (153)
T d2fbna1 81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--------------------------LNPNN 134 (153)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------------HSTTC
T ss_pred cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCCC
Confidence 9999999999999999999999999999999999999999999987665 23555
Q ss_pred HHHHHHHHHHHHHHHH
Q 044131 675 TAIYAMLEKLNGKMRE 690 (784)
Q Consensus 675 ~~i~~~l~~l~~~~~~ 690 (784)
.++...+..+..++++
T Consensus 135 ~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 135 LDIRNSYELCVNKLKE 150 (153)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666666654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=4.6e-05 Score=63.90 Aligned_cols=92 Identities=13% Similarity=0.032 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHhcCCCCC--cchHHHHHHH
Q 044131 552 YACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHK---DTNLARVASEKLFELDPEN--VGYHVLLSNI 624 (784)
Q Consensus 552 ~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~ 624 (784)
...++..+...+++++|++.|++. ...| ++.++..+..++...+ +.+.|+.+++++++.+|.+ ...+..|+.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356778888999999999999987 3444 6678888988887644 5567999999999998765 3478899999
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 044131 625 YSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 625 y~~~g~~~~a~~~~~~m~~ 643 (784)
|...|++++|.+.++...+
T Consensus 82 y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 9999999999999998876
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=5.7e-05 Score=67.73 Aligned_cols=109 Identities=10% Similarity=0.007 Sum_probs=76.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 044131 516 FLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEP-GPAVWGALLGACMIH 594 (784)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~ 594 (784)
+......+...|++++|.+.|++.++.. ..........+. ..+.| +...|..+..++...
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~-------------~~~~~~~~~~~~------~~~~~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV-------------EGSRAAAEDADG------AKLQPVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------HHHHHHSCHHHH------GGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh-------------hhhhhhhhhHHH------HHhChhhHHHHHHHHHHHHhh
Confidence 4445556667777777777777665310 000000111111 11233 344778888888999
Q ss_pred CCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 595 KDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 595 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
|+++.|...++++++++|+++..|..++.+|...|++++|.+.++...+
T Consensus 91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887765
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=6.4e-05 Score=63.79 Aligned_cols=89 Identities=18% Similarity=0.137 Sum_probs=70.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcc-------hHHHHHHH
Q 044131 554 CMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVG-------YHVLLSNI 624 (784)
Q Consensus 554 ~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~-------~~~~l~~~ 624 (784)
.+.+.+.+.|++++|++.|++. .+.| +..+|..+..++...|+++.|...++++++++|+++. .|..++.+
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 4566777788888888887665 2344 5778889999999999999999999999999988776 45567778
Q ss_pred HHhcCChHHHHHHHHHHH
Q 044131 625 YSAERDYLQAATVRQVVK 642 (784)
Q Consensus 625 y~~~g~~~~a~~~~~~m~ 642 (784)
+...+++++|.+.++.-.
T Consensus 89 ~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 888999999999987643
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.80 E-value=0.00014 Score=64.94 Aligned_cols=91 Identities=11% Similarity=0.071 Sum_probs=74.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAE 628 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 628 (784)
.|..+..+|.+.|++++|+..+++. .+.| +..+|..+..++...|+++.|...++++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4566777888999999999998876 3344 5678999999999999999999999999999999999999999988777
Q ss_pred CChHH-HHHHHHHH
Q 044131 629 RDYLQ-AATVRQVV 641 (784)
Q Consensus 629 g~~~~-a~~~~~~m 641 (784)
+...+ ..++++.|
T Consensus 146 ~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 146 KEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 66543 34444444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=3.1e-06 Score=91.04 Aligned_cols=87 Identities=13% Similarity=-0.060 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGLAVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAER 629 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 629 (784)
.+..+...+.+.|+.++|...+++.. .++ ..++..|...++..|+++.|+..++++++++|+++..|..|+.+|...|
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~ 200 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG 200 (497)
T ss_dssp ---------------------CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC
Confidence 33444444444444444443332211 111 1234444444444555555555555555555555555555555555555
Q ss_pred ChHHHHHHH
Q 044131 630 DYLQAATVR 638 (784)
Q Consensus 630 ~~~~a~~~~ 638 (784)
++.+|...+
T Consensus 201 ~~~~A~~~y 209 (497)
T d1ya0a1 201 DHLTTIFYY 209 (497)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 555444443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.78 E-value=0.0021 Score=61.73 Aligned_cols=227 Identities=14% Similarity=-0.041 Sum_probs=126.8
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----hCchHHHHHHHHHHHHcCCCCchhhHh
Q 044131 376 SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQ----LGAISLGKWVHELVKSRNFESNIYVST 451 (784)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~ 451 (784)
|+..|..|-..+.+.+++++|++.|++..+.| |...+..+-..+.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 34556666666777778888888887777655 33333333333332 234444555544444433
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--Hc
Q 044131 452 ALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGL----HGHGLEALQLFSEMLHSGIRPSGVTFLSVLYAC--SH 525 (784)
Q Consensus 452 ~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~--~~ 525 (784)
+...+..+...+.. .++.+.|...+++....|..+. .......... ..
T Consensus 69 -------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a-~~~l~~~~~~~~~~ 122 (265)
T d1ouva_ 69 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEG-CASLGGIYHDGKVV 122 (265)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHCSSS
T ss_pred -------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhH-HHhhcccccCCCcc
Confidence 22233333222222 3445566666666665542211 1111111111 12
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCH
Q 044131 526 AGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGR----AGQLEKALEFIKGLAVEPGPAVWGALLGACMI----HKDT 597 (784)
Q Consensus 526 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~ 597 (784)
......+...+..... ..+...+..+...|.. ..+...+..+++...-..++..+..|...+.. ..|.
T Consensus 123 ~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 123 TRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred cchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccch
Confidence 3345555555555432 2334455555555553 34556666666654323456666666655554 5689
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 044131 598 NLARVASEKLFELDPENVGYHVLLSNIYSA----ERDYLQAATVRQVVKKRKL 646 (784)
Q Consensus 598 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~~ 646 (784)
+.|...++++.+.+ ++..+..|+.+|.. ..+.++|.+.+++-.+.|-
T Consensus 199 ~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 199 KEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 99999999998874 56788899999986 4478899999988776654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.73 E-value=7e-05 Score=67.12 Aligned_cols=132 Identities=11% Similarity=0.052 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDI 558 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~ 558 (784)
.+......+...|++++|++.|+++++. +..........+.. .+.| ....|..+..+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~----------~~~~~~~~~~~nla~~ 86 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA----------KLQPVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG----------GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH----------HhChhhHHHHHHHHHH
Confidence 4455666788899999999999987651 11000111111110 1123 24567778889
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 044131 559 LGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQ 633 (784)
Q Consensus 559 l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 633 (784)
+.+.|++++|+..+++. .+.| ++.+|..+..++...|+++.|...++++++++|+++.++..|..++.......+
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876 4566 466999999999999999999999999999999999999998888765544433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.73 E-value=0.0002 Score=63.97 Aligned_cols=111 Identities=9% Similarity=-0.061 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044131 514 VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMI 593 (784)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~ 593 (784)
..+......+...|++++|...|+..+......+.... ++. ...+.+ ...+|..+..++..
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~--------------~~~-~~~~~~----~~~~~~Nla~~~~~ 76 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE--------------KES-KASESF----LLAAFLNLAMCYLK 76 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH--------------HHH-HHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch--------------hhh-hhcchh----HHHHHHhHHHHHHH
Confidence 34555666677777777777777765532221111100 000 000000 12356677788899
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 594 HKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 594 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.|+++.|...++++++++|+++..|..++.+|...|++++|.+.++...+
T Consensus 77 l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 77 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.60 E-value=0.00036 Score=61.01 Aligned_cols=128 Identities=11% Similarity=-0.062 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHH
Q 044131 478 EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVD 557 (784)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 557 (784)
...+......+.+.|++.+|+..|++.+..- |... ...-.........+ ....|..+..
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~~~~~~~~~~~~--------~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWDDQILLDKKKNI--------EISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCCCHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhhhHHHHHhhhhH--------HHHHHhhHHH
Confidence 4467777888999999999999999988631 1100 00000000111111 1236677888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 558 ILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
.|.+.|++++|++.+++. .+.| +..+|..+..++...|+++.|...++++++++|+++.....+..+..
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 899999999999998875 4556 56799999999999999999999999999999999988877766543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.52 E-value=0.027 Score=53.39 Aligned_cols=157 Identities=12% Similarity=0.057 Sum_probs=96.0
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC-CChhHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044131 345 NSSVLTALSTVYSRLNEMEAARKLFDESSE-KSLASWNAMIAGYTQ----NGLTEEAISLFQEMQASKVAPNPVTVSSIL 419 (784)
Q Consensus 345 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 419 (784)
|+..+..|...+.+.|++++|.+.|++..+ .+..++..|-..|.. ..+...|...+......+ +......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 456677788888899999999999998654 466777777777776 567888998888887765 222233332
Q ss_pred HHHh----hhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHh----cCCHHHHHHHHhhcC-CCCHHHHHHHHHHHHH
Q 044131 420 SACA----QLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAK----CGNIVEARELFDLMS-HKSEVTWNTMISGYGL 490 (784)
Q Consensus 420 ~a~~----~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~ 490 (784)
..+. ...+.+.+...+....+.|... ....|...+.. ......|...+.... ..+..++..|...|..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYAE---GCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhhh---HHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence 2222 2456778888888887766322 22223333332 334555555555433 3455666666665554
Q ss_pred ----cCCHHHHHHHHHHHHHC
Q 044131 491 ----HGHGLEALQLFSEMLHS 507 (784)
Q Consensus 491 ----~g~~~~A~~~~~~m~~~ 507 (784)
..+...+...++...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~~ 175 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACDL 175 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCcccccccchhhhhccccc
Confidence 23344555555555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.49 E-value=0.0002 Score=58.87 Aligned_cols=85 Identities=11% Similarity=-0.039 Sum_probs=44.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhc
Q 044131 485 ISGYGLHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRA 562 (784)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~ 562 (784)
...+.+.|++++|+..|++.+.. .| +..+|..+..++.+.|++++|...|+..++ +.|+ ...|..+...|...
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccc---cccccccchHHHHHHHHHC
Confidence 33445555666666666655553 23 344455555555555566666655555542 2333 44555555555555
Q ss_pred CCHHHHHHHHHh
Q 044131 563 GQLEKALEFIKG 574 (784)
Q Consensus 563 g~~~eA~~~~~~ 574 (784)
|++++|.+.+++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 555555555543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.38 E-value=0.02 Score=56.30 Aligned_cols=274 Identities=14% Similarity=0.056 Sum_probs=147.5
Q ss_pred ChhhHhHHHHHhhCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 044131 40 DLSTVTKLAHRLSDFKATCYARALFFSIPKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAAS 119 (784)
Q Consensus 40 ~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~ 119 (784)
|..-...+.+.+-+.|.++.|..++..+. .|..+++.+.+.+++..|.+ ++... -+..+|..+..+|.
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd-~~~k~------~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVD-GARKA------NSTRTWKEVCFACV 80 (336)
T ss_dssp ----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHH-HHHHH------TCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHH-HHHHc------CCHHHHHHHHHHHH
Confidence 33333445566667888888888887654 36778888888888888888 66543 24457777888887
Q ss_pred cCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcccHHHHHHHHHcCCCchHHHHH
Q 044131 120 ACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMP---EKDTVLWNSMISGLMKNCCFQDSIWV 196 (784)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 196 (784)
+......+ .+.......++.....++..|-..|..++...+++... ..+...++.++..|++.+ .++-++.
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~ 154 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREH 154 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHH
Confidence 66554432 22223333455555678888888888888888888643 345666788888888764 3333333
Q ss_pred HHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCe
Q 044131 197 FGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDL 276 (784)
Q Consensus 197 ~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~ 276 (784)
+... . +......++..|-..+-++ -++-.|.+.|.++.|..+.=.-+ +++
T Consensus 155 ---l~~~-s---~~y~~~k~~~~c~~~~l~~----------------------elv~Ly~~~~~~~~A~~~~i~~~-~~~ 204 (336)
T d1b89a_ 155 ---LELF-W---SRVNIPKVLRAAEQAHLWA----------------------ELVFLYDKYEEYDNAIITMMNHP-TDA 204 (336)
T ss_dssp ---HHHH-S---TTSCHHHHHHHHHTTTCHH----------------------HHHHHHHHTTCHHHHHHHHHHST-TTT
T ss_pred ---HHhc-c---ccCCHHHHHHHHHHcCChH----------------------HHHHHHHhcCCHHHHHHHHHHcc-hhh
Confidence 3321 1 2233344555565444433 35556777777777765542211 223
Q ss_pred eeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHh-------------hcCCCChhHHHHHHHHHHHhCCC
Q 044131 277 ISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPV-------------FYPFGHLHLTNCIHSFCLKSGIV 343 (784)
Q Consensus 277 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-------------~~~~~~~~~a~~i~~~~~~~g~~ 343 (784)
......+..+.+.++++...++....++. .| ...+.+|.. +.+.+++...+..+..+...|
T Consensus 205 ~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n-- 278 (336)
T d1b89a_ 205 WKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN-- 278 (336)
T ss_dssp CCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC--
T ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC--
Confidence 33444566666666666555555554442 12 222333333 333444444444444443333
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHH
Q 044131 344 SNSSVLTALSTVYSRLNEMEAARKL 368 (784)
Q Consensus 344 ~~~~~~~~Li~~y~~~g~~~~A~~~ 368 (784)
+..+.++|.+.|...++++.-++.
T Consensus 279 -~~~vn~al~~lyie~~d~~~l~~~ 302 (336)
T d1b89a_ 279 -NKSVNESLNNLFITEEDYQALRTS 302 (336)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -hHHHHHHHHHHHhCcchhHHHHHH
Confidence 234566666666666655443333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.36 E-value=4.4e-05 Score=66.43 Aligned_cols=121 Identities=13% Similarity=0.054 Sum_probs=66.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----------CHHHHHHHHHHhHHhcCCCCC-cchHHHHH
Q 044131 488 YGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAG----------LVREGDEIFQSMIHDHGFKPL-AEHYACMV 556 (784)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g----------~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv 556 (784)
|-+.+.+++|+..|++..+.. +.|..++..+..++...+ .+++|.+.|+..++ +.|+ ...|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhHH
Confidence 445666778888888877742 334445555555555332 23444444444442 2333 33344444
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 044131 557 DILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQ 633 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 633 (784)
.+|...|++. ++... ..++++.|...++++++++|+++.++..|+......+.+.+
T Consensus 83 ~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e 138 (145)
T d1zu2a1 83 NAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE 138 (145)
T ss_dssp HHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3333322210 01000 01246889999999999999999888888776544433333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.32 E-value=0.089 Score=51.39 Aligned_cols=244 Identities=14% Similarity=0.091 Sum_probs=127.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchH
Q 044131 350 TALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAIS 429 (784)
Q Consensus 350 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 429 (784)
..++..|.+.++++.|.+++.+.. +..+|..+...+.+.....-| ++.......+......++..+-..|..+
T Consensus 44 ~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e 116 (336)
T d1b89a_ 44 GRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFE 116 (336)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChH
Confidence 345566666777777766665442 455777777777766554332 2222334445556667777777777777
Q ss_pred HHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC-CC----------HHHHHHHHHHHHHcCCHHHHH
Q 044131 430 LGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH-KS----------EVTWNTMISGYGLHGHGLEAL 498 (784)
Q Consensus 430 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-~~----------~~~~~~li~~~~~~g~~~~A~ 498 (784)
....+++...... ..+..+++-|+..|+|.+. +.-.+.+..... -| ...|.-++-.|.+.|++++|+
T Consensus 117 ~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~ 194 (336)
T d1b89a_ 117 ELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 194 (336)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHH
Confidence 7777777665332 4456667777777777653 333333333221 11 112444555555555555554
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 044131 499 QLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVE 578 (784)
Q Consensus 499 ~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~ 578 (784)
.+.- + -.|+..-....+..+.+.++.+...+......+. ++...+.++......-+..+..+.++
T Consensus 195 ~~~i---~--~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~-----~p~~i~~lL~~v~~~~d~~r~V~~~~----- 259 (336)
T d1b89a_ 195 ITMM---N--HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-----KPLLLNDLLMVLSPRLDHTRAVNYFS----- 259 (336)
T ss_dssp HHHH---H--STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-----CGGGHHHHHHHHGGGCCHHHHHHHHH-----
T ss_pred HHHH---H--cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc-----CHHHHHHHHHHhccCCCHHHHHHHHH-----
Confidence 4321 1 1222222222333444555555444444433321 12333444444444444444444444
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 044131 579 PGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQ 633 (784)
Q Consensus 579 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 633 (784)
+.+++......++...+.+ +...+..|..+|...++++.
T Consensus 260 --------------k~~~l~li~p~Le~v~~~n--~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 260 --------------KVKQLPLVKPYLRSVQNHN--NKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp --------------HTTCTTTTHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHH
T ss_pred --------------hcCCcHHHHHHHHHHHHcC--hHHHHHHHHHHHhCcchhHH
Confidence 3445555555555544322 34577778888888887654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.31 E-value=0.00058 Score=61.33 Aligned_cols=114 Identities=13% Similarity=-0.017 Sum_probs=81.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 044131 518 SVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDT 597 (784)
Q Consensus 518 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~ 597 (784)
.........|++++|.+.|...+.-+ |....- + +...........-++. -....|..+..++...|++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~---rG~~l~----~-~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW---RGPVLD----D-LRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC---CSSTTG----G-GTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC---cccccc----c-CcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCc
Confidence 34456788999999999999887432 321100 0 0000111111111111 1234788899999999999
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 598 NLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 598 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+.|...++++++++|.+...|..|+.+|...|++++|.+.++..++
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988744
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=0.00065 Score=53.72 Aligned_cols=71 Identities=18% Similarity=0.111 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 044131 554 CMVDILGRAGQLEKALEFIKGL----A----VEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNI 624 (784)
Q Consensus 554 ~lv~~l~r~g~~~eA~~~~~~m----~----~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 624 (784)
-+...+.+.|++++|...+++. + ..++ ..++..|..++...|++++|...++++++++|+++.++..+..+
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~ 89 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYF 89 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 3445555566666655555433 1 1233 45888999999999999999999999999999999888877554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=0.0017 Score=54.47 Aligned_cols=59 Identities=8% Similarity=-0.082 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 044131 481 WNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMI 540 (784)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 540 (784)
+..+...|.+.|++++|+..|++.++.. +.+...+..+..++...|++++|.+.++.++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 3445556666677777777777666642 2345556666666677777777777766655
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.01 E-value=0.00041 Score=60.00 Aligned_cols=83 Identities=14% Similarity=0.041 Sum_probs=55.7
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh----------cCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 044131 561 RAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMI----------HKDTNLARVASEKLFELDPENVGYHVLLSNIYSAE 628 (784)
Q Consensus 561 r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~----------~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 628 (784)
|.+.+++|.+.+++. ...| ++.+|..+..++.. .+.+++|+..++++++++|+++..|..++++|...
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence 444455555555544 2233 33344444444432 24467899999999999999999999999999887
Q ss_pred CC-----------hHHHHHHHHHHHh
Q 044131 629 RD-----------YLQAATVRQVVKK 643 (784)
Q Consensus 629 g~-----------~~~a~~~~~~m~~ 643 (784)
|+ +++|.+.++...+
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccc
Confidence 64 5667777665544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.01 E-value=0.001 Score=58.13 Aligned_cols=62 Identities=10% Similarity=-0.097 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-------C----cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 582 AVWGALLGACMIHKDTNLARVASEKLFELDPE-------N----VGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 582 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~-------~----~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
..|+.+..++...|+++.|...+++++++.|. . ...|..++.+|...|++++|...++...+
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778888888888888888887765432 1 22577899999999999999999887654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.91 E-value=0.00055 Score=65.72 Aligned_cols=125 Identities=14% Similarity=0.037 Sum_probs=79.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHH
Q 044131 490 LHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKA 568 (784)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA 568 (784)
+.|++++|+..|++.++.. +-|...+..+...++..|++++|.+.|+...+ +.|+ ...+..+..++...+..+++
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHHH
Confidence 4578888888888887752 33556677777788888888888888887764 3555 33444444555444444444
Q ss_pred HHHHHhC--CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchH
Q 044131 569 LEFIKGL--AVEPGP-AVWGALLGACMIHKDTNLARVASEKLFELDPENVGYH 618 (784)
Q Consensus 569 ~~~~~~m--~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 618 (784)
..-.... ..+|+. ..+......+...|+.+.|...++++.++.|+.+..+
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 3322221 123322 2344445567778899999999999888888876653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.84 E-value=0.00018 Score=76.91 Aligned_cols=166 Identities=13% Similarity=-0.029 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHH--hhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHH
Q 044131 393 TEEAISLFQEMQASKVAPNPVTVSSILSAC--AQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELF 470 (784)
Q Consensus 393 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~--~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f 470 (784)
+..+.+.+++..+....++..-....+..+ ...+.++.+.+.+....+.. +++...+..+...+.+.|+.++|...+
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 143 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQ 143 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------C
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHH
Confidence 345666677666554444433322222221 11233333333333222221 234556677777888888888888777
Q ss_pred hhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC
Q 044131 471 DLMSHKSE-VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL 548 (784)
Q Consensus 471 ~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 548 (784)
.....++. .++..+...+...|++++|+..|++..+. .| +..+|+.+...+...|+..+|..+|.+.+. --.|-
T Consensus 144 ~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~--~~~~~ 219 (497)
T d1ya0a1 144 SSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA--VKFPF 219 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSBCC
T ss_pred HHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCC
Confidence 66554332 36777788888889999999999998884 45 457888888888899999999998888763 22344
Q ss_pred cchHHHHHHHHHhcC
Q 044131 549 AEHYACMVDILGRAG 563 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g 563 (784)
...+..|..+|.+..
T Consensus 220 ~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 220 PAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 677777777776543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.84 E-value=0.006 Score=54.35 Aligned_cols=122 Identities=6% Similarity=-0.017 Sum_probs=81.7
Q ss_pred HHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044131 420 SACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQ 499 (784)
Q Consensus 420 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 499 (784)
......|+++.|.+.+..++..- +.... ......+.+...-..+.......|..+...+...|++++|+.
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~ 88 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 88 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 45667788888888888887641 11000 000000011111111122235678888999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH----hcCCCCCcchH
Q 044131 500 LFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIH----DHGFKPLAEHY 552 (784)
Q Consensus 500 ~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~ 552 (784)
.++++.+.. +-+...|..++.++...|+.++|++.|+.+.+ +.|+.|..++-
T Consensus 89 ~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 89 ELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 999999853 44677899999999999999999999998743 46888886653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.65 E-value=0.0047 Score=53.72 Aligned_cols=109 Identities=12% Similarity=-0.058 Sum_probs=65.2
Q ss_pred HHHHHHHH--HHHHcCCHHHHHHHHHHHHHCCC-CCC----------HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC
Q 044131 479 VTWNTMIS--GYGLHGHGLEALQLFSEMLHSGI-RPS----------GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGF 545 (784)
Q Consensus 479 ~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~-~pd----------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 545 (784)
.+|..+-. .+.+.|++++|++.|++.++..- .|+ ...|..+..++...|++++|.+.++..++-+
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~-- 85 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF-- 85 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc--
Confidence 35666633 34456778888888877765211 111 2345555556666666666665555544210
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcc
Q 044131 546 KPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEPG-----PAVWGALLGACMIHKDTNLARVASEKLFELDPENVG 616 (784)
Q Consensus 546 ~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 616 (784)
.+. ...++ ..++..+..++...|++++|...+++++++.|+..+
T Consensus 86 ---------------------------~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~ 135 (156)
T d2hr2a1 86 ---------------------------NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 135 (156)
T ss_dssp ---------------------------HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred ---------------------------cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence 000 11121 125677888999999999999999999988765443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.49 E-value=0.0049 Score=48.34 Aligned_cols=62 Identities=15% Similarity=-0.040 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-------cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 582 AVWGALLGACMIHKDTNLARVASEKLFELDPEN-------VGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 582 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
..+-.+...+...|+++.|...+++++++.|.+ +..+..|+++|.+.|++++|.+.+++..+
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 345577889999999999999999999876544 34688999999999999999999988765
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.31 E-value=0.00086 Score=64.31 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=86.4
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 044131 524 SHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDTNLA 600 (784)
Q Consensus 524 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a 600 (784)
...|++++|+..+++.++. .|+ ...+..+..+|++.|++++|.+.++.. ...|+ ...+..+..+....+..+.+
T Consensus 7 L~~G~l~eAl~~l~~al~~---~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 4579999999999999853 565 789999999999999999999999887 35665 44666666655544443333
Q ss_pred HHHHHHH-hcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 601 RVASEKL-FELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 601 ~~~~~~~-~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
....... +..+|++...+...+.++...|++++|.+.++...+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2222221 1234555566777889999999999999999887653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.92 E-value=5.3 Score=40.06 Aligned_cols=246 Identities=12% Similarity=0.073 Sum_probs=123.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhCch
Q 044131 350 TALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASK-VAPNPVTVSSILSACAQLGAI 428 (784)
Q Consensus 350 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~ 428 (784)
..-+....+.++.+.....+..-+ .+...-.....+..+.|+.++|...+..+-..| ..|+. ...+.......|.+
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~--c~~l~~~~~~~~~l 152 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNA--CDKLFSVWRASGKQ 152 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTH--HHHHHHHHHHTTCS
T ss_pred HHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchH--HHHHHHHHHhcCCC
Confidence 334556667778777666554332 244444556677778888888888877776655 23332 22222222222211
Q ss_pred HHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---------------------------CCHHHH
Q 044131 429 SLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---------------------------KSEVTW 481 (784)
Q Consensus 429 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---------------------------~~~~~~ 481 (784)
+....-.-++.....|+...|..+...++. .+....
T Consensus 153 -----------------t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~ 215 (450)
T d1qsaa1 153 -----------------DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTR 215 (450)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHH
T ss_pred -----------------CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhh
Confidence 111111222222233333333333333322 122222
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHCC-CCCCHHHH-H-HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHH
Q 044131 482 NTMISGYGL--HGHGLEALQLFSEMLHSG-IRPSGVTF-L-SVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMV 556 (784)
Q Consensus 482 ~~li~~~~~--~g~~~~A~~~~~~m~~~g-~~pd~~t~-~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv 556 (784)
..+..++.+ ..+.+.|..++....... ..++.... . .+.......+..+.+..++...... ..+.....-.+
T Consensus 216 ~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~ 292 (450)
T d1qsaa1 216 QMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRV 292 (450)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHH
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHH
Confidence 222223222 245667777777665532 22222111 1 1112223345566777766655432 22333333344
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHH
Q 044131 557 DILGRAGQLEKALEFIKGLAVEPG--PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLS 622 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 622 (784)
....+.+++..+..+++.|+..|. ..-.--+..+....|+.+.|...++.+-. .+ ++|-.|+
T Consensus 293 ~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~---~fYG~LA 356 (450)
T d1qsaa1 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QR---GFYPMVA 356 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SC---SHHHHHH
T ss_pred HHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-CC---ChHHHHH
Confidence 455667788888888888864432 22223455677778888888888887764 22 3676665
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.59 E-value=1.4 Score=35.87 Aligned_cols=46 Identities=9% Similarity=-0.192 Sum_probs=21.6
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcC
Q 044131 392 LTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRN 442 (784)
Q Consensus 392 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 442 (784)
++++|+++|++..+.|-.. ....+ +.....+.+++.+.+....+.|
T Consensus 8 d~~~A~~~~~kaa~~g~~~---a~~~l--~~~~~~~~~~a~~~~~~aa~~g 53 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMF---GCLSL--VSNSQINKQKLFQYLSKACELN 53 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTT---HHHHH--HTCTTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCChh---hhhhh--ccccccCHHHHHHHHhhhhccc
Confidence 4556666666665555211 11111 1122344555555555555544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.58 E-value=2.5 Score=33.39 Aligned_cols=141 Identities=11% Similarity=0.014 Sum_probs=91.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHH
Q 044131 488 YGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEK 567 (784)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~e 567 (784)
+...|..++..++..+.... .+..-|+.++.-....-+-+...+.++.+-+-+.+.| ++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 34457777777777777653 2344455555554555555666666666654444433 233333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 044131 568 ALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLA 647 (784)
Q Consensus 568 A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 647 (784)
....+-.+. .+..-.+--|....++|.-+.-..+++.+++-+.-+|....-+++.|.+.|...++-++....-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 333332221 222334445667778888899999999988877777888999999999999999999999998888886
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.54 E-value=0.8 Score=36.65 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcc
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLFELDPENVG 616 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 616 (784)
.|-.|.-+|.+.|+++.|...++++++++|++..
T Consensus 75 ~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 75 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 4444444555555555555555555555555443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.26 E-value=0.82 Score=36.57 Aligned_cols=47 Identities=11% Similarity=0.003 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 596 DTNLARVASEKLFELDPENV-GYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 596 ~~~~a~~~~~~~~~l~p~~~-~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
+.+.|+.+++.+++.+|.+. ..+..|+-.|.+.|++++|.+.++...
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L 100 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 100 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455555555555555443 344555555666666666665555443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=89.13 E-value=1.7 Score=35.17 Aligned_cols=51 Identities=18% Similarity=0.023 Sum_probs=34.3
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 044131 594 HKDTNLARVASEKLFELDPENVGYHVLLSNIYSA----ERDYLQAATVRQVVKKRKL 646 (784)
Q Consensus 594 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~~ 646 (784)
..|.+.|...++++.+.. ++.....|+.+|.. ..+.++|.+.+++-.+.|.
T Consensus 72 ~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 72 KKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred chhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 346677777777776653 45567777777776 4567777777777666554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=88.92 E-value=12 Score=37.12 Aligned_cols=352 Identities=9% Similarity=-0.029 Sum_probs=193.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChh
Q 044131 249 TGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLH 328 (784)
Q Consensus 249 ~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 328 (784)
...+..+.+.++.+.....|..-+ .++..--....+..+.|+.++|...+...-..|.. ..+
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-----------------~p~ 137 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-----------------QPN 137 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-----------------CCT
T ss_pred HHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------Cch
Confidence 344556677788877666554432 23333335667777889998998888877655421 122
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 044131 329 LTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKV 408 (784)
Q Consensus 329 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 408 (784)
....++....+.|.. +....-.-+......|+...|..+...++..........+....+ ...+...... .
T Consensus 138 ~c~~l~~~~~~~~~l-t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~-----~ 208 (450)
T d1qsaa1 138 ACDKLFSVWRASGKQ-DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART-----T 208 (450)
T ss_dssp HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH-----S
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhc-----C
Confidence 333444544554433 333333455566677899999999888776555555555554432 2222222211 1
Q ss_pred CCCHHHHHHHHHHHhhh--CchHHHHHHHHHHHHcCCCCchhh---HhHHHHHHHhcCCHHHHHHHHhhcC--CCCHHHH
Q 044131 409 APNPVTVSSILSACAQL--GAISLGKWVHELVKSRNFESNIYV---STALIDMYAKCGNIVEARELFDLMS--HKSEVTW 481 (784)
Q Consensus 409 ~pd~~t~~~ll~a~~~~--~~~~~a~~i~~~~~~~g~~~~~~~---~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~ 481 (784)
.++......+..+..+. .+.+.+...+.............. ...+.......+..+.|...+.... ..+....
T Consensus 209 ~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 288 (450)
T d1qsaa1 209 GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLI 288 (450)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHH
T ss_pred CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHH
Confidence 23333333344444432 456667777666655432221111 1122223334566677766665443 2333333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHH-HHH
Q 044131 482 NTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVD-ILG 560 (784)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~-~l~ 560 (784)
.-.+......++...+...|..|... ..-...-..-+..+....|+.++|..+|..... .++ -|.-|.. .++
T Consensus 289 ~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~~Lg 361 (450)
T d1qsaa1 289 ERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQRIG 361 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHHHTT
T ss_pred HHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHHHcC
Confidence 33444455678888888888877432 122233345567888889999999999998752 232 4544332 122
Q ss_pred hcCCHHHHHHHHHhCCCCCCH-HHH---HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 044131 561 RAGQLEKALEFIKGLAVEPGP-AVW---GALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAAT 636 (784)
Q Consensus 561 r~g~~~eA~~~~~~m~~~p~~-~~~---~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 636 (784)
..-.+. ....+..+.. ..- ..-+......|....|++-+..+.+-- ++.-...++.+..+.|.++.|..
T Consensus 362 ~~~~~~-----~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~ 434 (450)
T d1qsaa1 362 EEYELK-----IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQ 434 (450)
T ss_dssp CCCCCC-----CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCCC-----cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHH
Confidence 110100 0001111111 111 112345667899999999888877533 35567788888899999998887
Q ss_pred HHHHH
Q 044131 637 VRQVV 641 (784)
Q Consensus 637 ~~~~m 641 (784)
.....
T Consensus 435 a~~~~ 439 (450)
T d1qsaa1 435 ATIAG 439 (450)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 66554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=86.82 E-value=6 Score=31.18 Aligned_cols=139 Identities=14% Similarity=0.108 Sum_probs=84.8
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHH
Q 044131 388 TQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEAR 467 (784)
Q Consensus 388 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 467 (784)
.-.|..++..++..+...+ .+..-|+.++--.....+-+...+.++.+-+ ..| ..+|+++....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~---~FD----------ls~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhh---hcC----------chhhhcHHHHH
Confidence 3456666777776666543 2333344444333333333333333333221 111 24566666666
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC
Q 044131 468 ELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGF 545 (784)
Q Consensus 468 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 545 (784)
..|-.+.. +..-.+..+....+.|+-+.-.++++.+.+. -+|++.....+..||.+.|...++.+++.+..+. |+
T Consensus 77 ~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~ 151 (161)
T d1wy6a1 77 ECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 151 (161)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hH
Confidence 66555443 3334455667788888888888888887764 4788888888999999999999999998888654 44
|