Citrus Sinensis ID: 044153

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MQTIDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAWKTYRVFKNIDVCSGCQVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYRFIWK
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEHHHHcHccHcccHHHHHHHHHHHHHHHHHHHHEEEEHHHcccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mqtidmtsvsllapqqfadltPTFFIGLLKAIVPGLLVNIYEVGvnqlydveidkinkpdlplasgdlsigaGITITCTCLLMSLAIGimlrsppliSTIIMWFVLSsaysvdlpflrwkrnpflATMYGVLERGLAMPLGYFMHIQAQVRAWKTYRVFknidvcsgcqvldmpdvdgdkehGIQTLSIALGKEKVLWLGVYMLLVVYGALVIagasspflesKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYRFIWK
Flexible Loop (DISEMBL)
MQTIDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAWKTYRVFKNIDVCSGCQVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYRFIWK
Low Complexity Region (SEG)
MQTIDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAWKTYRVFKNIDVCSGCQVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYRFIWK
Disordered region (IsUnstruct)
*********SLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAWKTYRVFKNIDVCSGCQVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYRFIW*
Disordered Region (DISOPRED)
*QTIDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAWKTYRVFKNIDVCSGCQVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYRFIWK
Disordered Region (DISEMBL)
MQTIDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAWKTYRVFKNIDVCSGCQVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYRFIWK
Disordered Region (DISPRO)
MQTIDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAWKTYRVFKNIDVCSGCQVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYRFIWK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQTIDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAWKTYRVFKNIDVCSGCQVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYRFIWK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
B7FA90	404	Probable homogentisate ph	no	no	0.984	0.638	0.403	2e-53
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.988	0.659	0.408	2e-53
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.958	0.612	0.410	8e-52
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.992	0.635	0.395	7e-51
Q0D576	379	Probable homogentisate ph	no	no	0.847	0.585	0.296	7e-19
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.847	0.575	0.313	1e-17
Q4J8K2	275	Digeranylgeranylglyceryl	yes	no	0.736	0.701	0.277	4e-09
Q12VF3	281	Digeranylgeranylglyceryl	yes	no	0.652	0.608	0.236	2e-07
Q2NGM1	272	Digeranylgeranylglyceryl	yes	no	0.568	0.547	0.267	1e-06
A3CW74	279	Digeranylgeranylglyceryl	yes	no	0.625	0.587	0.282	2e-06

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 171/270 (63%), Gaps = 12/270 (4%)

Query: 3   TIDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLP 62
            + + SVSLLA +  +D++P F  GLL+A+V  L +NIY VG+NQL+D+EIDK+NKP LP
Sbjct: 124 ALSIVSVSLLAVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLP 183

Query: 63  LASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRN 122
           LASG+ S   G+ +      MS  +G  + S PL   + + F+L +AYS++LPFLRWKR+
Sbjct: 184 LASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPFLRWKRS 243

Query: 123 PFLATMYGVLERGLAMPLGYFMHIQAQVRAWKTYRVFKNIDVCSGCQVL----------D 172
             +A +  +  R + + L +F+HIQ  V  ++   VF    + +   +           D
Sbjct: 244 AVVAALCILAVRAVIVQLAFFLHIQTFV--FRRPAVFTRPLIFATAFMTFFSVVIALFKD 301

Query: 173 MPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHS 232
           +PD++GD+  GI++ S+ LG++KV W+ V +L + Y   ++ GA+S  L SK  T++GH+
Sbjct: 302 IPDIEGDRIFGIKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSACLWSKYATVVGHA 361

Query: 233 TLAFLLLQRARNVDVSSQAAILSFYRFIWK 262
            LA +L  R+R++D++S+ AI SFY FIWK
Sbjct: 362 ILAAILWNRSRSIDLTSKTAITSFYMFIWK 391

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  208 bits (530), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/267 (40%), Positives = 168/267 (62%), Gaps = 8/267 (2%)

Query: 4   IDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPL 63
           + + SVS LA ++ +D++P  F G+L+A+V  L++NIY VG+NQL DVEIDK+NKP LPL
Sbjct: 114 LSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPL 173

Query: 64  ASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNP 123
           ASG+ S+  GI I  +  +MS  +G ++ S PL   + + F+L +AYS++LP LRWKR  
Sbjct: 174 ASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFA 233

Query: 124 FLATMYGVLERGLAMPLGYFMHIQAQV--------RAWKTYRVFKNIDVCSGCQVLDMPD 175
            +A M  +  R + + + +++HIQ  V        R       F +          D+PD
Sbjct: 234 LVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPD 293

Query: 176 VDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLA 235
           ++GDK  GI++ S+ LG+++V W  V +L + Y   ++ GA+SPF+ SK+I+++GH  LA
Sbjct: 294 IEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILA 353

Query: 236 FLLLQRARNVDVSSQAAILSFYRFIWK 262
             L  RA++VD+SS+  I S Y FIWK
Sbjct: 354 TTLWARAKSVDLSSKTEITSCYMFIWK 380

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  203 bits (517), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 108/263 (41%), Positives = 171/263 (65%), Gaps = 12/263 (4%)

Query: 10  SLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLS 69
           SL+A ++ +DL+  FFIG L+ +V  + ++I+ VG+NQL D+EIDKINKPDLPLASG LS
Sbjct: 137 SLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDIEIDKINKPDLPLASGKLS 196

Query: 70  IGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMY 129
               + IT + L++ L    ++ S PL  T+ +  +++SAY+VDLP LRWK+ P L  + 
Sbjct: 197 FRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAIN 256

Query: 130 GVLERGLAMPLGYFMHIQAQVRAWKTYRVF-KNIDVCSGCQVL---------DMPDVDGD 179
            + +  +   LG+F+H+Q  V  +K    F + +  C+    +         D+PD++GD
Sbjct: 257 FIADVAVTRSLGFFLHMQTCV--FKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGD 314

Query: 180 KEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLL 239
           ++ GIQ+LS+ LG ++V W+ V +L + YG  ++ GA+SP L SK+IT++GH+ LA +L 
Sbjct: 315 EKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLW 374

Query: 240 QRARNVDVSSQAAILSFYRFIWK 262
             A++VD++S   + SFY FIWK
Sbjct: 375 YHAKSVDLTSNVVLHSFYMFIWK 397

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  200 bits (509), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 106/268 (39%), Positives = 161/268 (60%), Gaps = 8/268 (2%)

Query: 3   TIDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLP 62
           T+   S SLLA ++ +D++ +F IG+L+ ++P L + IY  GVNQLYD+EIDKINKP LP
Sbjct: 129 TLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEIYLCGVNQLYDLEIDKINKPHLP 188

Query: 63  LASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRN 122
           +ASG  S   G+ I+   L +S     +  S PLI  +++     +AYS+D+P LRWKR 
Sbjct: 189 MASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICNLVVIASSWTAYSIDVPLLRWKRY 248

Query: 123 PFLATMYGVLERGLAMPLGYFMHIQAQV--------RAWKTYRVFKNIDVCSGCQVLDMP 174
           PF+A M  +    LA+P+ YF H+Q  V        R+      F            D+P
Sbjct: 249 PFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFPRSLGFLVAFMTFYSLGLALSKDIP 308

Query: 175 DVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTL 234
           DV+GDKEHGI + ++ LG+++  W+ V    + +G  ++AGAS     +K+ T +G++ L
Sbjct: 309 DVEGDKEHGIDSFAVRLGQKRAFWICVSFFEMAFGVGILAGASCSHFWTKIFTGMGNAVL 368

Query: 235 AFLLLQRARNVDVSSQAAILSFYRFIWK 262
           A +L  +A++VD+S +A+  SFY FIWK
Sbjct: 369 ASILWYQAKSVDLSDKASTGSFYMFIWK 396

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 94.4 bits (233), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 113/233 (48%), Gaps = 11/233 (4%)

Query: 39  NIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLIS 98
           N Y VG+NQ+YD+ IDK+NKP LP+A+GDLS+     +         +I +    P + S
Sbjct: 137 NGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSIVVTNFGPFITS 196

Query: 99  TIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVR---AWKT 155
              +   L + YSV  P  R KR P  A +     RG  +  G +   +A +     W +
Sbjct: 197 LYCLGLFLGTIYSV--PPFRLKRYPVAAFLIIATVRGFLLNFGVYYATRAALGLTFQWSS 254

Query: 156 YRVFKNIDVCSGCQVL----DMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGAL 211
              F    V     V+    D+PDV+GD+++ I TL+  LG   + +LG  +L+  Y A 
Sbjct: 255 PVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLIANYVAA 314

Query: 212 VIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVS--SQAAILSFYRFIWK 262
           +      P    + + +  H+ LA  ++ +   ++ +  ++ AI  +YRFIW 
Sbjct: 315 IAVAFLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAISQYYRFIWN 367

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 113/233 (48%), Gaps = 11/233 (4%)

Query: 39  NIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLIS 98
           N Y VG+NQ+YD+ IDK+NKP LP+A+GDLS+ +   +     +  L +      P + S
Sbjct: 144 NGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLLVVGFNFGPFITS 203

Query: 99  TIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVR---AWKT 155
              +   L + YSV  P LR KR P  A +     RG  +  G +   +A +     W  
Sbjct: 204 LYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVYHATRAALGLPFQWSA 261

Query: 156 YRVFKNIDVCSGCQVL----DMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGAL 211
              F    V     V+    D+PDV+GD++  I TL+  LG   + +LG  +LLV Y + 
Sbjct: 262 PVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSA 321

Query: 212 VIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVS--SQAAILSFYRFIWK 262
           +      P +    + I  H  LA  L+ +   ++ +  ++ AI  +YRFIW 
Sbjct: 322 ISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYRFIWN 374

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q4J8K2|DGGGP_SULAC Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=Saci_1565 PE=3 SV=1

 Score = 62.0 bits (149), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 109/234 (46%), Gaps = 41/234 (17%)

Query: 19  DLTPTFFIGLLKAIVPGLLVNIYEVG---VNQLYDVEIDKINKPDLPLASGDLSIGAG-- 73
             TP FF+       P L+V++   G   +N +YD+E+DKINKP+ PL SG +++     
Sbjct: 33  KFTPLFFL-------PLLVVSLIAAGGYVINDVYDIEVDKINKPERPLPSGRIAVNIARR 85

Query: 74  --ITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRN------PFL 125
             I +    L++S+ +G++     LI+ ++++      Y+  L  L    N        L
Sbjct: 86  FSIVLFAVGLIISIPLGLIPFGFALITIVLLY-----EYARSLKKLGLVGNFIVALTSAL 140

Query: 126 ATMYGVLERGLAMPLGYFMHIQAQVRAWKTYRVFKNIDVCSGCQVLDMPDVDGDKEHGIQ 185
           +  YG L  G    LG F+     +  +   R F          V  + D++GDK +G+ 
Sbjct: 141 SAYYGGLASG--SLLGNFIIPTIYIFFFTLSREF----------VKGIEDIEGDKRNGVN 188

Query: 186 TLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLL 239
           TL++ LG EK  W+   +  ++ G L+       FL   +I +IG   L  LL+
Sbjct: 189 TLAVKLG-EKSTWI---IAKIILGILIFTSPLPYFLGFNVIYLIGILALDVLLV 238

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) (taxid: 330779)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q12VF3|DGGGP_METBU Digeranylgeranylglyceryl phosphate synthase OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_1679 PE=3 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 11/182 (6%)

Query: 44  GVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMW 103
           G+N  +D+EIDK+NKP  P+ SG +S+ + +  +    +  + +  ++   PL   I ++
Sbjct: 61  GLNDYFDIEIDKVNKPSRPIPSGKISLKSALYFSLFLFITGITLAFLVN--PLCGIIALF 118

Query: 104 FVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAWKTYRVFKNID 163
               ++  + L     KR PF          G     G  +   A ++A     +   + 
Sbjct: 119 ----NSMVLILYAQSLKRTPFFGNASVGYLTGSTFLFGGAVFGMAGLQALVVLFLLATLA 174

Query: 164 VCSGCQVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLES 223
             +   V D+ D+ GDK+ G +TL I +G +K  ++        +G   +  +  P+L+S
Sbjct: 175 TIAREIVKDVEDIVGDKKDGARTLPILIGAKKASYIA-----AAFGFTAMLASPVPYLQS 229

Query: 224 KL 225
            L
Sbjct: 230 IL 231

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanococcoides burtonii (strain DSM 6242) (taxid: 259564)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q2NGM1|DGGGP_METST Digeranylgeranylglyceryl phosphate synthase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=Msp_0634 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)

Query: 45  VNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWF 104
           +N  YD EID+IN P+ P+ SG + +   +  +    L+S+ +G ++     I  +I+  
Sbjct: 51  INDYYDYEIDRINAPNRPIPSGKIELKRALYYSLILFLVSIILGFIISLENGI-VVILCT 109

Query: 105 VLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAWKTYRVFKNIDV 164
           +L   Y+ DL     K+  F+  +   +  GL    G    I   V        F  +  
Sbjct: 110 ILMIIYAYDL-----KQRCFIGNLCVAILTGLTFVFGGL--ITKDVNLGFILGFFAFLMT 162

Query: 165 CSGCQVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGV 201
            S   + D+ D++GDK+    TL I  G +K + L V
Sbjct: 163 LSREIIKDIEDIEGDKKEDAHTLPIIYGTKKAVMLAV 199

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanosphaera stadtmanae (strain DSM 3091) (taxid: 339860)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|A3CW74|DGGGP_METMJ Digeranylgeranylglyceryl phosphate synthase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=Memar_1697 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 13/177 (7%)

Query: 45  VNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWF 104
           +N + DVEID+IN+PD P+ +GD+S+           +  +AI  +  +  L   II   
Sbjct: 54  INDVRDVEIDRINRPDRPIPAGDISLAGARAYAAALFVGGIAIATLTTTLCLAIAIINSV 113

Query: 105 VLSSAYSVDLPFLRWKRNPFLATM-YGVLERGLAMPLGYFMHIQAQVRAWKTYRVFKNID 163
           +L   Y+V     R KR P L  +    L   + +  G F  I+  VR   +      + 
Sbjct: 114 IL-IVYAV-----RLKRTPVLGNVAVAYLAGSVFLFGGAFAGIEGLVRNL-SLAAITFLA 166

Query: 164 VCSGCQVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPF 220
             +   + D  DVDGD   G +TL + +G  K    G++      GA  +A +  PF
Sbjct: 167 TIARELLKDAEDVDGDAAGGARTLPMIVGVRKT---GIFAFACACGA--VAASLLPF 218

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) (taxid: 368407)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
224143266	284	predicted protein [Populus trichocarpa]	0.988	0.911	0.531	1e-72
219842170	411	homogentisate geranylgeranyl transferase	0.988	0.630	0.513	4e-68
359476155	397	PREDICTED: probable homogentisate phytyl	0.988	0.652	0.486	5e-65
296082088	398	unnamed protein product [Vitis vinifera]	0.988	0.650	0.486	7e-65
295656253	401	homogentisate geranylgeranyl transferase	0.973	0.635	0.463	2e-61
171190284	317	homogentisate geranylgeranyl transferase	0.988	0.817	0.475	5e-60
125598038	408	hypothetical protein OsJ_22157 [Oryza sa	0.988	0.634	0.468	3e-59
33391144	404	homogentisic acid geranylgeranyl transfe	0.988	0.641	0.468	3e-59
218198652	414	hypothetical protein OsI_23899 [Oryza sa	0.988	0.625	0.468	4e-59
297606269	278	Os06g0646900 [Oryza sativa Japonica Grou	0.980	0.924	0.467	5e-59

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 142/267 (53%), Positives = 191/267 (71%), Gaps = 8/267 (2%)

Query: 4   IDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPL 63
           I +TSVSLL  +  ++L+PTFF+GLLKA+VP +L+NIY VG+NQL+DVEIDK+NKP LPL
Sbjct: 18  IGITSVSLLPVETISELSPTFFMGLLKALVPSVLMNIYVVGLNQLFDVEIDKVNKPYLPL 77

Query: 64  ASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNP 123
           ASGD S+G G+ I    LL S A+GIM +SP L S +++  VL S YS++LPFLRWK+  
Sbjct: 78  ASGDFSMGTGVAIVSASLLASFAMGIMFQSPLLFSALLISCVLGSVYSIELPFLRWKKQA 137

Query: 124 FLATMYGVLERGLAMPLGYFMHIQAQVRAWKTY----RVFKNIDVCSGCQVL----DMPD 175
           FLA    ++ R + + L +F+H+Q  V    T      VF    +C    V+    D+PD
Sbjct: 138 FLAATCIMIVRAIVVQLAFFVHMQKFVLGKTTVVTRSLVFATAFMCFFSAVIALFKDIPD 197

Query: 176 VDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLA 235
           VDGD+++GIQ+ S++LG+E+V WL V MLL+ YGA V+ GASS FL SK ITI+GH TLA
Sbjct: 198 VDGDRDYGIQSFSVSLGQERVFWLCVNMLLIAYGAAVVVGASSTFLPSKFITILGHCTLA 257

Query: 236 FLLLQRARNVDVSSQAAILSFYRFIWK 262
           F+L  RAR+VD++S+ +I SFY FIWK
Sbjct: 258 FILWLRARSVDLTSKDSITSFYMFIWK 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  264 bits (674), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 138/269 (51%), Positives = 191/269 (71%), Gaps = 10/269 (3%)

Query: 4   IDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPL 63
           I +TSVSLL  +   DL+PT+FIGLLKA+VP +L+NIY VG+NQL+DVEIDK+NKP LPL
Sbjct: 130 IGITSVSLLPVETIVDLSPTYFIGLLKALVPSVLMNIYVVGLNQLFDVEIDKVNKPYLPL 189

Query: 64  ASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNP 123
           ASG  S+  GI I    LL+SL +GI  +SPPL++ +++ F L S YS++LPFLRWK++ 
Sbjct: 190 ASGKFSMATGILIVSASLLLSLYMGITFQSPPLLAALLISFALGSVYSIELPFLRWKKHA 249

Query: 124 FLATMYGVLERGLAMPLGYFMHIQAQVRAWKTY----RVFKNIDVCSGCQVL----DMPD 175
           FLA    ++ R + + L +F+HIQ  V     +     +F    +C     +    D+PD
Sbjct: 250 FLAASCILIVRAMVVQLAFFVHIQKFVLGKSIFIPRSLMFATAFMCFFSAAIALFKDIPD 309

Query: 176 VDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSP--FLESKLITIIGHST 233
           V+GD+++GIQ+ S++LG+E+VLWL V MLLV YGA V+ GASSP   L  KLIT+IGHST
Sbjct: 310 VEGDRDYGIQSFSVSLGQERVLWLCVNMLLVAYGAAVVHGASSPSSLLPVKLITMIGHST 369

Query: 234 LAFLLLQRARNVDVSSQAAILSFYRFIWK 262
           +A++L  +A+ VD++SQ +I SFY FIWK
Sbjct: 370 IAWILWMKAQFVDLTSQKSITSFYMFIWK 398

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  253 bits (647), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 130/267 (48%), Positives = 180/267 (67%), Gaps = 8/267 (2%)

Query: 4   IDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPL 63
           I +TSVSLL  +  +DL+P FF+GLLKA+VP +L+NIY VG+NQ++DVEIDK+NKP+LPL
Sbjct: 118 IGITSVSLLPLETISDLSPAFFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPL 177

Query: 64  ASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNP 123
           ASGD S+  G  I    LLMS+ +GIM +SPPL   +++ F+L +AYS+++P LRWKR P
Sbjct: 178 ASGDFSMETGSQIVFISLLMSVGMGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYP 237

Query: 124 FLATMYGVLERGLAMPLGYFMHIQAQVRA----WKTYRVFKNIDVCSGCQVL----DMPD 175
            LA    ++ R + + L +F HIQ  V      +    VF    +C    V+    D+PD
Sbjct: 238 LLAASCILIVRAIVVQLAFFAHIQKHVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPD 297

Query: 176 VDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLA 235
           VDGD+E GIQ+ ++ LG++KV WL V MLL+ YGA  + GASS  +  K  T+  H  LA
Sbjct: 298 VDGDREFGIQSFTVKLGQKKVFWLCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALA 357

Query: 236 FLLLQRARNVDVSSQAAILSFYRFIWK 262
            +L  RA++VD+SS+ A+ SFY FIWK
Sbjct: 358 LVLWVRAQSVDLSSKEAVTSFYMFIWK 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082088|emb|CBI21093.3| unnamed protein product [Vitis vinifera]

 Score =  253 bits (645), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 130/267 (48%), Positives = 180/267 (67%), Gaps = 8/267 (2%)

Query: 4   IDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPL 63
           I +TSVSLL  +  +DL+P FF+GLLKA+VP +L+NIY VG+NQ++DVEIDK+NKP+LPL
Sbjct: 94  IGITSVSLLPLETISDLSPAFFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPL 153

Query: 64  ASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNP 123
           ASGD S+  G  I    LLMS+ +GIM +SPPL   +++ F+L +AYS+++P LRWKR P
Sbjct: 154 ASGDFSMETGSQIVFISLLMSVGMGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYP 213

Query: 124 FLATMYGVLERGLAMPLGYFMHIQAQVRA----WKTYRVFKNIDVCSGCQVL----DMPD 175
            LA    ++ R + + L +F HIQ  V      +    VF    +C    V+    D+PD
Sbjct: 214 LLAASCILIVRAIVVQLAFFAHIQKHVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPD 273

Query: 176 VDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLA 235
           VDGD+E GIQ+ ++ LG++KV WL V MLL+ YGA  + GASS  +  K  T+  H  LA
Sbjct: 274 VDGDREFGIQSFTVKLGQKKVFWLCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALA 333

Query: 236 FLLLQRARNVDVSSQAAILSFYRFIWK 262
            +L  RA++VD+SS+ A+ SFY FIWK
Sbjct: 334 LVLWVRAQSVDLSSKEAVTSFYMFIWK 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 122/263 (46%), Positives = 176/263 (66%), Gaps = 8/263 (3%)

Query: 8   SVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGD 67
           SVSLL      DL+P FF+G LKA++P + +NIY VG+NQL+DVEIDK+NKP+LPLASG+
Sbjct: 126 SVSLLPLTSIGDLSPAFFVGYLKALIPSIFMNIYVVGLNQLFDVEIDKVNKPNLPLASGE 185

Query: 68  LSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLAT 127
            S+G G  I     LMS A+GI+ +SPP+   +++ F+  SAYSV+LP LRWKRN FLA 
Sbjct: 186 YSMGLGKAIVSAFGLMSFAMGIVFQSPPVFFALLICFLFGSAYSVELPLLRWKRNAFLAA 245

Query: 128 MYGVLERGLAMPLGYFMHIQAQV----RAWKTYRVFKNIDVCSGCQVL----DMPDVDGD 179
              ++ R + + L +F HIQ  V      +     F  + +     V+    D+PDVDGD
Sbjct: 246 FSILMVRAITVNLAFFYHIQKYVLGRPMVFPRSLCFATVCISMFTTVIALFKDIPDVDGD 305

Query: 180 KEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLL 239
           ++ GIQ+ S+ LG+++V WL + +LL+ Y + ++ GASS FL SKL+T+IGH TLA +L 
Sbjct: 306 RDFGIQSFSVCLGQKRVFWLCIGILLIAYASALVIGASSSFLLSKLVTVIGHCTLASILW 365

Query: 240 QRARNVDVSSQAAILSFYRFIWK 262
           +RA +V++   +++ SFY  IWK
Sbjct: 366 RRANSVNLEDNSSMTSFYMSIWK 388

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 127/267 (47%), Positives = 176/267 (65%), Gaps = 8/267 (2%)

Query: 4   IDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPL 63
           + +TSVSLL    F DL+P FF+GLLK ++P + VNIY VG+NQLYDVEIDK+NKP+LP+
Sbjct: 38  VGITSVSLLPLVSFEDLSPAFFVGLLKVMIPIVCVNIYVVGLNQLYDVEIDKVNKPNLPI 97

Query: 64  ASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNP 123
           ASG+ S+  G  I     LMS+ +GIM +SPP++  +++ F   +AYS+D+P  RWK+N 
Sbjct: 98  ASGEYSMETGKAIVSAFGLMSIIMGIMFQSPPVLYCLLVCFFFGTAYSIDVPLFRWKKNA 157

Query: 124 FLATMYGVLERGLAMPLGYFMHIQAQV--RAWKTYRVFKNIDVCSGCQVL------DMPD 175
           FLA M  V+ R + + L  F HIQ  V  R     R      +C    V       D+PD
Sbjct: 158 FLAAMCIVIVRAITVQLTVFYHIQQYVLGRPVLFSRSLAFAIICMTLFVTVIALFKDIPD 217

Query: 176 VDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLA 235
           VDGD++ GIQT+++ LGK++V WL + +LL+ YG+ V+ G+SS  L SKL+T+ GH  LA
Sbjct: 218 VDGDRDFGIQTITVTLGKKRVFWLCITILLIAYGSAVVIGSSSSLLLSKLVTVTGHCILA 277

Query: 236 FLLLQRARNVDVSSQAAILSFYRFIWK 262
            +L  RA +VD+ S  +I SFY FIWK
Sbjct: 278 SILWSRAISVDLESNKSITSFYMFIWK 304

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125598038|gb|EAZ37818.1| hypothetical protein OsJ_22157 [Oryza sativa Japonica Group]

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 125/267 (46%), Positives = 169/267 (63%), Gaps = 8/267 (2%)

Query: 4   IDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPL 63
           I +TSVSLL  +   D T     G L+A+   L +NIY VG+NQLYD++IDK+NKP LPL
Sbjct: 129 IGITSVSLLPMRSLDDFTMKALWGFLEALSSSLCMNIYVVGLNQLYDIQIDKVNKPSLPL 188

Query: 64  ASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNP 123
           ASG+ S+  G  +  T L+MS+AIGI  +S PL+  + + F L SAYSVD P LRWKRN 
Sbjct: 189 ASGEFSVATGAVLVLTSLIMSIAIGIRSKSAPLLCALFISFFLGSAYSVDAPLLRWKRNA 248

Query: 124 FLATMYGVLERGLAMPLGYFMHIQAQV----RAWKTYRVFKNIDVCSGCQVL----DMPD 175
           FLA    +  R + + L +F H+Q  V     A     VF  + +C    V+    D+PD
Sbjct: 249 FLAASCILFVRAVLVQLAFFAHMQQHVLKRPLAPTKSVVFATLFMCCFSSVIALFKDIPD 308

Query: 176 VDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLA 235
           +DGD+  G+++LS+ LG E+V WL + +LL  YGA ++AGASS  L   +IT+ GH  LA
Sbjct: 309 IDGDRHFGVESLSVRLGPERVYWLCINILLTAYGAAILAGASSTNLCQMIITVFGHGLLA 368

Query: 236 FLLLQRARNVDVSSQAAILSFYRFIWK 262
           F L QRA++ DV ++A I SFY FIWK
Sbjct: 369 FALWQRAQHCDVENKAWITSFYMFIWK 395

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33391144|gb|AAP43913.1| homogentisic acid geranylgeranyl transferase [Oryza sativa Japonica Group]

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 125/267 (46%), Positives = 169/267 (63%), Gaps = 8/267 (2%)

Query: 4   IDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPL 63
           I +TSVSLL  +   D T     G L+A+   L +NIY VG+NQLYD++IDK+NKP LPL
Sbjct: 125 IGITSVSLLPMRSLDDFTMKALWGFLEALSSSLCMNIYVVGLNQLYDIQIDKVNKPSLPL 184

Query: 64  ASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNP 123
           ASG+ S+  G  +  T L+MS+AIGI  +S PL+  + + F L SAYSVD P LRWKRN 
Sbjct: 185 ASGEFSVATGAVLVLTSLIMSIAIGIRSKSAPLLCALFISFFLGSAYSVDAPLLRWKRNA 244

Query: 124 FLATMYGVLERGLAMPLGYFMHIQAQV----RAWKTYRVFKNIDVCSGCQVL----DMPD 175
           FLA    +  R + + L +F H+Q  V     A     VF  + +C    V+    D+PD
Sbjct: 245 FLAASCILFVRAVLVQLAFFAHMQQHVLKRPLAPTKSVVFATLFMCCFSSVIALFKDIPD 304

Query: 176 VDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLA 235
           +DGD+  G+++LS+ LG E+V WL + +LL  YGA ++AGASS  L   +IT+ GH  LA
Sbjct: 305 IDGDRHFGVESLSVRLGPERVYWLCINILLTAYGAAILAGASSTNLCQMIITVFGHGLLA 364

Query: 236 FLLLQRARNVDVSSQAAILSFYRFIWK 262
           F L QRA++ DV ++A I SFY FIWK
Sbjct: 365 FALWQRAQHCDVENKAWITSFYMFIWK 391

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218198652|gb|EEC81079.1| hypothetical protein OsI_23899 [Oryza sativa Indica Group]

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 125/267 (46%), Positives = 169/267 (63%), Gaps = 8/267 (2%)

Query: 4   IDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPL 63
           I +TSVSLL  +   D T     G L+A+   L +NIY VG+NQLYD++IDK+NKP LPL
Sbjct: 135 IGITSVSLLPMRSLDDFTMKALWGFLEALSSSLCMNIYVVGLNQLYDIQIDKVNKPSLPL 194

Query: 64  ASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNP 123
           ASG+ S+  G  +  T L+MS+AIGI  +S PL+  + + F L SAYSVD P LRWKRN 
Sbjct: 195 ASGEFSVATGAVLVLTSLIMSIAIGIRSKSAPLLCALFISFFLGSAYSVDAPLLRWKRNA 254

Query: 124 FLATMYGVLERGLAMPLGYFMHIQAQV----RAWKTYRVFKNIDVCSGCQVL----DMPD 175
           FLA    +  R + + L +F H+Q  V     A     VF  + +C    V+    D+PD
Sbjct: 255 FLAASCILFVRAVLVQLAFFAHMQQHVLKRPLAPTKSVVFATLFMCCFSSVIALFKDIPD 314

Query: 176 VDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLA 235
           +DGD+  G+++LS+ LG E+V WL + +LL  YGA ++AGASS  L   +IT+ GH  LA
Sbjct: 315 IDGDRHFGVESLSVRLGPERVYWLCINILLTAYGAAILAGASSTNLCQMIITVFGHGLLA 374

Query: 236 FLLLQRARNVDVSSQAAILSFYRFIWK 262
           F L QRA++ DV ++A I SFY FIWK
Sbjct: 375 FALWQRAQHCDVENKAWITSFYMFIWK 401

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297606269|ref|NP_001058202.2| Os06g0646900 [Oryza sativa Japonica Group] gi|255677275|dbj|BAF20116.2| Os06g0646900, partial [Oryza sativa Japonica Group]

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 124/265 (46%), Positives = 168/265 (63%), Gaps = 8/265 (3%)

Query: 6   MTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLAS 65
           +TSVSLL  +   D T     G L+A+   L +NIY VG+NQLYD++IDK+NKP LPLAS
Sbjct: 1   ITSVSLLPMRSLDDFTMKALWGFLEALSSSLCMNIYVVGLNQLYDIQIDKVNKPSLPLAS 60

Query: 66  GDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFL 125
           G+ S+  G  +  T L+MS+AIGI  +S PL+  + + F L SAYSVD P LRWKRN FL
Sbjct: 61  GEFSVATGAVLVLTSLIMSIAIGIRSKSAPLLCALFISFFLGSAYSVDAPLLRWKRNAFL 120

Query: 126 ATMYGVLERGLAMPLGYFMHIQAQV----RAWKTYRVFKNIDVCSGCQVL----DMPDVD 177
           A    +  R + + L +F H+Q  V     A     VF  + +C    V+    D+PD+D
Sbjct: 121 AASCILFVRAVLVQLAFFAHMQQHVLKRPLAPTKSVVFATLFMCCFSSVIALFKDIPDID 180

Query: 178 GDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFL 237
           GD+  G+++LS+ LG E+V WL + +LL  YGA ++AGASS  L   +IT+ GH  LAF 
Sbjct: 181 GDRHFGVESLSVRLGPERVYWLCINILLTAYGAAILAGASSTNLCQMIITVFGHGLLAFA 240

Query: 238 LLQRARNVDVSSQAAILSFYRFIWK 262
           L QRA++ DV ++A I SFY FIWK
Sbjct: 241 LWQRAQHCDVENKAWITSFYMFIWK 265

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.988	0.659	0.415	2.4e-51
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.977	0.624	0.416	2.2e-50
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.977	0.628	0.409	4.6e-50
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.877	0.585	0.326	2.2e-21
TAIR|locus:2074393	387	G4 [Arabidopsis thaliana (taxi	0.354	0.240	0.316	0.00027

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 111/267 (41%), Positives = 172/267 (64%)

Query:     4 IDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPL 63
             + + SVS LA ++ +D++P  F G+L+A+V  L++NIY VG+NQL DVEIDK+NKP LPL
Sbjct:   114 LSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPL 173

Query:    64 ASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNP 123
             ASG+ S+  GI I  +  +MS  +G ++ S PL   + + F+L +AYS++LP LRWKR  
Sbjct:   174 ASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFA 233

Query:   124 FLATMYGVLERGLAMPLGYFMHIQAQV--RAWKTYR--VFKNIDVCSGCQVL----DMPD 175
              +A M  +  R + + + +++HIQ  V  R     R  +F    +     V+    D+PD
Sbjct:   234 LVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPD 293

Query:   176 VDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLA 235
             ++GDK  GI++ S+ LG+++V W  V +L + Y   ++ GA+SPF+ SK+I+++GH  LA
Sbjct:   294 IEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILA 353

Query:   236 FLLLQRARNVDVSSQAAILSFYRFIWK 262
               L  RA++VD+SS+  I S Y FIWK
Sbjct:   354 TTLWARAKSVDLSSKTEITSCYMFIWK 380

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 110/264 (41%), Positives = 172/264 (65%)

Query:     7 TSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASG 66
             T  SL+A ++ +DL+  FFIG L+ +V  + ++I+ VG+NQL D+EIDKINKPDLPLASG
Sbjct:   134 TFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDIEIDKINKPDLPLASG 193

Query:    67 DLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLA 126
              LS    + IT + L++ L    ++ S PL  T+ +  +++SAY+VDLP LRWK+ P L 
Sbjct:   194 KLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASAYNVDLPLLRWKKYPVLT 253

Query:   127 TMYGVLERGLAMPLGYFMHIQAQV-RAWKTYR---VFKNIDVCSGCQVL----DMPDVDG 178
              +  + +  +   LG+F+H+Q  V +   T+    +F    V     V+    D+PD++G
Sbjct:   254 AINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEG 313

Query:   179 DKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLL 238
             D++ GIQ+LS+ LG ++V W+ V +L + YG  ++ GA+SP L SK+IT++GH+ LA +L
Sbjct:   314 DEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVL 373

Query:   239 LQRARNVDVSSQAAILSFYRFIWK 262
                A++VD++S   + SFY FIWK
Sbjct:   374 WYHAKSVDLTSNVVLHSFYMFIWK 397

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 108/264 (40%), Positives = 171/264 (64%)

Query:     7 TSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASG 66
             T  SL+A ++ +DL+  FFIG L+ +V  + ++I++VG+NQL D+EIDKINKPDLPLASG
Sbjct:   131 TFKSLVAVERLSDLSLAFFIGWLQVVVAVICIHIFDVGLNQLCDIEIDKINKPDLPLASG 190

Query:    67 DLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLA 126
             +LS    + IT + L++ L    ++ S PL  T+ +  + ++AY+VDLP LRWK+ P L 
Sbjct:   191 NLSFRNVVIITASSLILGLGFAWIVGSWPLFWTVFICCMFAAAYNVDLPLLRWKKYPVLT 250

Query:   127 TMYGVLERGLAMPLGYFMHIQAQV-RAWKTYR---VFKNIDVCSGCQVL----DMPDVDG 178
              +  +    +   LG+F+H+Q  V +   T+    +F    V     V+    D+PD++G
Sbjct:   251 AISFIANVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEG 310

Query:   179 DKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLL 238
             D++ GIQ+LS+ LG ++V W+ V +L + YG  ++ GA+SP L SK+IT++GH+ LA +L
Sbjct:   311 DEKFGIQSLSLRLGPKRVFWICVSLLEMAYGVTILVGATSPILWSKIITVLGHAILASVL 370

Query:   239 LQRARNVDVSSQAAILSFYRFIWK 262
                A++ D++S   + SFY FIWK
Sbjct:   371 WYHAKSTDLTSNVVLQSFYMFIWK 394

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 2.2e-21, P = 2.2e-21
 Identities = 81/248 (32%), Positives = 123/248 (49%)

Query:    28 LLKAIVPGLLV----NIYEVGVNQLYDVEIDKINKPDLPLASGDLSI-GAGITITCTCLL 82
             +LKA+  GLL     N Y VG+NQ+YD+ IDK+NKP LP+A+GDLS+  A + +    + 
Sbjct:   137 VLKAL-SGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIA 195

Query:    83 MSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGY 142
               L +G     P + S   +   L + YSV  P LR KR P  A +     RG  +  G 
Sbjct:   196 GLLVVGFNF-GPFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGV 252

Query:   143 FMHIQAQVRA---WKTYRVFKNIDVCSGCQVL----DMPDVDGDKEHGIQTLSIALGKEK 195
             +   +A +     W     F    V     V+    D+PDV+GD++  I TL+  LG   
Sbjct:   253 YHATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRN 312

Query:   196 VLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSS--QAAI 253
             + +LG  +LLV Y + +      P +    + I  H  LA  L+ +   ++ ++  + AI
Sbjct:   313 IAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAI 372

Query:   254 LSFYRFIW 261
               +YRFIW
Sbjct:   373 SGYYRFIW 380

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

TAIR|locus:2074393 G4 [Arabidopsis thaliana (taxid:3702)]

 Score = 80 (33.2 bits), Expect = 0.00027, Sum P(2) = 0.00027
 Identities = 32/101 (31%), Positives = 48/101 (47%)

Query:    28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAI 87
             +L  ++ G  +  Y   +N  YD +ID IN+P  P+ SG +S    IT     LL  L I
Sbjct:   137 ILCMMMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISEPEVITQVWVLLLGGLGI 196

Query:    88 -GIM-----LRSPPLISTIIMWFVLSSAYSVDLPFLRWKRN 122
              GI+       +P +    +   +LS  YS   P L+ K+N
Sbjct:   197 AGILDVWAGHTTPTVFYLALGGSLLSYIYSA--PPLKLKQN 235

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;TAS

GO:0046408 "chlorophyll synthetase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009535 "chloroplast thylakoid membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XVIII.1796.1	homogentisate phytyltransferase (284 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_II000277	4-hydroxyphenylpyruvate dioxygenase (EC-1.13.11.27) (444 aa)						•	•		0.901
	grail3.0003038902	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00051228	SubName- Full=Putative uncharacterized protein; (340 aa)						•			0.899
	eugene3.00051120	4-hydroxyphenylpyruvate dioxygenase (343 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_VIII0681	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00120625	SubName- Full=Putative uncharacterized protein; (470 aa)			•			•			0.840
	fgenesh4_pg.C_scaffold_129000030	geranylgeranyl reductase (CHL P) (210 aa)			•			•			0.836
	grail3.0001010701	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (454 aa)			•			•			0.832
	gw1.66.323.1	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (413 aa)			•			•			0.829
	eugene3.00012780	annotation not avaliable (326 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	2e-99
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	1e-44
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	3e-16
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	5e-13
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	5e-10
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	4e-08
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	2e-06
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	3e-06
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	9e-06
PRK08238	479	PRK08238, PRK08238, hypothetical protein; Validate	2e-05
PRK12875	282	PRK12875, ubiA, prenyltransferase; Reviewed	2e-05
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	1e-04
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	2e-04
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	3e-04
PRK12392	331	PRK12392, PRK12392, bacteriochlorophyll c synthase	5e-04
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	7e-04

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  291 bits (746), Expect = 2e-99
 Identities = 126/267 (47%), Positives = 181/267 (67%), Gaps = 8/267 (2%)

Query: 4   IDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPL 63
           + +TSVSLLA +  +D +P FF GLL+A+VP LL+NIY VG+NQLYD+EIDK+NKP LPL
Sbjct: 1   LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPL 60

Query: 64  ASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNP 123
           ASG+ S+  G+ I  +  +MS  +G ++ S PL   + + FVL +AYS++LP LRWKR+ 
Sbjct: 61  ASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSA 120

Query: 124 FLATMYGVLERGLAMPLGYFMHIQAQV--RAWKTYR--VFKNIDVCSGCQVL----DMPD 175
             A    +  R + + L +F+H+Q  V  R     R  +F    +C    V+    D+PD
Sbjct: 121 VAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPD 180

Query: 176 VDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLA 235
           V+GD+  GI++ S+ LG+++V WL V +L + Y A ++ GASS FL SK+IT++GH  LA
Sbjct: 181 VEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILA 240

Query: 236 FLLLQRARNVDVSSQAAILSFYRFIWK 262
            +L QRA++VD+SS+AAI SFY FIWK
Sbjct: 241 SILWQRAQSVDLSSKAAITSFYMFIWK 267

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  152 bits (385), Expect = 1e-44
 Identities = 95/279 (34%), Positives = 142/279 (50%), Gaps = 28/279 (10%)

Query: 3   TIDMTSVSLLAPQQFADLTPTFFIGL------LKAIVPGLLVNIYEVGVNQLYDVEIDKI 56
           TI  TS+S+L     A    +  I L      L A +  L  N+Y VG+NQL D+EID+I
Sbjct: 24  TIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRI 83

Query: 57  NKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPF 116
           NKP LPLA+G+ S   G  I     +++L +  +L  P L+ T+ +  ++ +AYS  LP 
Sbjct: 84  NKPHLPLAAGEFSRRQGQRIVIITGILALILAALL-GPWLLITVGISLLIGTAYS--LPP 140

Query: 117 LRWKRNPFLATM--YGVLERGLAMPLGYFMHIQAQVRAWKTYRVFKNIDV-CSGCQVL-- 171
           +R KR P LA +  + V  RG+ + LG F+H Q          V     V      VL  
Sbjct: 141 IRLKRFPLLAALCIFTV--RGVIVNLGLFLHFQ----WLLGGSVLIPPTVWLLTLFVLVF 194

Query: 172 --------DMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLES 223
                   D+PD++GD+++ I T ++ LGK+ V  L  ++L   Y  ++  G  S    +
Sbjct: 195 TFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVN 254

Query: 224 KLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYRFIWK 262
               I+ H  L  LL  R++ VD+  + AI  FY+FIWK
Sbjct: 255 PAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWK 293

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 75.6 bits (186), Expect = 3e-16
 Identities = 63/248 (25%), Positives = 105/248 (42%), Gaps = 10/248 (4%)

Query: 17  FADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKI--NKPDLPLASGDLSIGAGI 74
            A       + LL  ++  LL+      +N  +D EID    NKPD PL SG +S    +
Sbjct: 14  LAAGGVLDLLLLLLLLLALLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREAL 73

Query: 75  TITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLER 134
            +    LL+ L + ++L    L+  ++   +    YS   P LR KR P L  +   L  
Sbjct: 74  LLGLALLLLGLLLALLLGPLLLLLGLLGLLLGL-LYS---PPLRLKRRPLLGELVVGLAF 129

Query: 135 GLAMPLGYFMHIQAQVRAWKTYRVFKNIDVCSGCQVLDMPDVDGDKEHGIQTLSIALGKE 194
           GL + LG +              +   +   +     D+ DV+GD++ GI+TL + LG++
Sbjct: 130 GLLILLGAYAVGGDIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRK 189

Query: 195 KVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAIL 254
           + L L   +L      L++       L + L+ ++    LA  LL  AR +   +     
Sbjct: 190 RALALYALLLAAALLLLLLL----LLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEPA 245

Query: 255 SFYRFIWK 262
             + FI  
Sbjct: 246 RTFLFIAL 253

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 66.9 bits (164), Expect = 5e-13
 Identities = 61/245 (24%), Positives = 99/245 (40%), Gaps = 24/245 (9%)

Query: 25  FIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKP--DLPLASGDLSIGAGITITCTCLL 82
              LL A +   L       +N L D EID+IN    + PL SG +S+   + +    LL
Sbjct: 46  LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLL 105

Query: 83  MSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGY 142
           + LA+ ++L +P      +   VL+ AY         KR  FL  +   L  GL    G 
Sbjct: 106 LGLALALLL-NPLAFLLSLAALVLALAY------PFLKRFTFLPQLVLGLAFGLGALAGA 158

Query: 143 FMHIQAQVRAWKTYRVFKNIDVCSGCQVL------DMPDVDGDKEHGIQTLSIALGKEKV 196
                        + +     + +    L       + D++GD++ G+++L +  G +K 
Sbjct: 159 A--AVGGSLPLLAWLLL----LAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKA 212

Query: 197 LWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSF 256
           L L   +LL+    LV+ G         LI ++G    A LLL +   VDV    A  + 
Sbjct: 213 LALA-LLLLLASALLVLLGL--LAGLLGLIYLLGLLVAALLLLYQILIVDVRDPPACFAL 269

Query: 257 YRFIW 261
           +    
Sbjct: 270 FDVNL 274

Length = 289

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 58.3 bits (141), Expect = 5e-10
 Identities = 39/195 (20%), Positives = 86/195 (44%), Gaps = 20/195 (10%)

Query: 28  LLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAI 87
           LL  ++ G L   +   +N  +D ++D IN+P  P+ SG +S+           +  L +
Sbjct: 40  LLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLV 99

Query: 88  GIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRN-----PFLATMYGVLE----RGLAM 138
            ++L +  ++   ++  VL+  YS+  P ++ KRN     P +   Y  L       +  
Sbjct: 100 ALVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFA 157

Query: 139 PLGYFMHIQAQVRAWKTYRVFKNIDVCSGCQVLDMPDVDGDKEHGIQTLSIALGKEKVLW 198
           PL +   + A + +   + +           + D   V+GD++ G+++L + +G ++   
Sbjct: 158 PLTWQSVVVALIYSLGAHGIMT---------LNDFKSVEGDRQLGLRSLPVMIGVKRAAI 208

Query: 199 LGVYMLLVVYGALVI 213
           + V  + V    ++ 
Sbjct: 209 VAVTTINVFQAMVIG 223

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 50/217 (23%), Positives = 82/217 (37%), Gaps = 41/217 (18%)

Query: 17  FADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITI 76
              L+     GL  A V   L       +N  +D EID+IN+PD P+ SG +S    +  
Sbjct: 31  GGILSSPSLTGLAFAAV--FLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAF 88

Query: 77  TCTCLLMSLAIGIMLRSPPLISTIIMWF--VLSSAYSVDLPFLRWKRNPFLAT------- 127
           +       +A+  +L   P +   I  F  +L   Y+  L     K  P L         
Sbjct: 89  SILLFAAGVALAFLL---PPLCLAIALFNSLLLVLYAETL-----KGTPGLGNASVAYLT 140

Query: 128 ----MYGVLERGLAMPLGYFMHIQAQVRAWKTYRVFKNIDVCSGCQVLDMPDVDGDKEHG 183
               ++G    G    L   +       A     + K+++           D++GD+  G
Sbjct: 141 GSTFLFGGAAVGTEGLLALLVLFALAALATLAREIIKDVE-----------DIEGDRAEG 189

Query: 184 IQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPF 220
            +TL I +G  K L++           L++A A+SP 
Sbjct: 190 ARTLPILIGVRKALYVAA-------AFLLVAVAASPL 219

Length = 276

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 14/221 (6%)

Query: 45  VNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWF 104
           +N  +D E+D IN+P  P+ SG +S+   + +     ++ LA+  +L  P +    ++  
Sbjct: 84  LNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLL-GPWVFLAALLGL 142

Query: 105 VLSSAYSVDLPFLRWKRNPFLA-TMYGVLERGLAMPLGYFMHIQAQVRAWKTYRVFKNID 163
            L+  YS   P LR K+N +L     G+   GL    G          +W    +     
Sbjct: 143 FLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWAGAAAFGAGLP-SWPIVILALLYS 199

Query: 164 VCS-GCQVL-DMPDVDGDKEHGIQTLSIALGKEKVLWLGVYML----LVVYGALVIAGAS 217
           + + G   L D   V+GD++ G+++L +  G++    +   ++    L V   L+  G  
Sbjct: 200 LGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIALLLAWG-- 257

Query: 218 SPFLESKLIT-IIGHSTLAFLLLQRARNVDVSSQAAILSFY 257
            P   + +   +I   TL   LL+     DV   A+   FY
Sbjct: 258 QPLYAAIVGLLLIPQITLQDRLLRDPLERDVWYNASAQPFY 298

Length = 314

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 12/196 (6%)

Query: 45  VNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWF 104
           +N L D+E D INKP+  + S   + G  + +    L +   +  ++  P      I+  
Sbjct: 55  INYLTDLEEDIINKPERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPL 114

Query: 105 VLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMP-LGYFMHIQAQVRAWKTYRVFKNID 163
           +L   YSV     R KR P    +   L   L+   LG + +          Y VF  + 
Sbjct: 115 ILGILYSVFF-KRRLKRIPLFKNLVVSLLWALSPLILGVYYYQLTIFSLLLLYAVFIFLK 173

Query: 164 VCSGCQVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLES 223
                 V D+ D++GD++ G++TL I LGKE+ L   + +L +++  L+I G        
Sbjct: 174 SFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKF-LLILNLLFLILLILG-------- 224

Query: 224 KLITIIGHSTLAFLLL 239
            + T +    L  LLL
Sbjct: 225 -VYTGLLPLLLLVLLL 239

Length = 285

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 45.7 bits (108), Expect = 9e-06
 Identities = 57/238 (23%), Positives = 95/238 (39%), Gaps = 18/238 (7%)

Query: 32  IVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIML 91
           ++ G  +  Y   +N  YD +ID IN+P  P+ SG +S    IT      +  +AI  +L
Sbjct: 60  LLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFIL 119

Query: 92  ------RSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMH 145
                   P +    +    ++  YS   P L+ K+N +L   + +    +A+P  +  H
Sbjct: 120 DLWAGHEFPNVFVLALFGSFIAFIYSA--PPLKLKQNGWLGN-FALGASYIALPW-WAGH 175

Query: 146 IQAQVRAWKTYRVFKNIDVCSGCQ---VLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVY 202
                       V   I   +G     V D   V+GD+  G+Q+L +A G E   W+ V 
Sbjct: 176 ALFGELNPDIA-VLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVG 234

Query: 203 MLLVVYGALV--IAGASSPFLESKLIT-IIGHSTLAFL-LLQRARNVDVSSQAAILSF 256
            + +  G +   +         + L+  II   T      L+     DV  QA+   F
Sbjct: 235 AIDIFQGLIAAYLLAIGENLYAAALVALIIPQITFQDKYFLKDPLKNDVKYQASAQPF 292

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|236195 PRK08238, PRK08238, hypothetical protein; Validated

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 12/116 (10%)

Query: 9   VSLLAPQQFADLTPTFFIGLLKAIVPGLLVN-IYEVGVNQLYDVEIDKIN--KPDLPLAS 65
           V LLA  QF DL       LL  +   L  + +Y +  N L D+E D+ +  K   P AS
Sbjct: 211 VPLLAAHQFGDLQ-ALLAALLAFLAFSLCASAVYIL--NDLLDLEADRAHPRKRRRPFAS 267

Query: 66  GDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKR 121
           G L I  G+      LL  LA+ + L  P  +  ++ +  L+ AYS     LR KR
Sbjct: 268 GALPIPFGLAAAPLLLLAGLALALAL-GPAFLLVLLAYLALTLAYS-----LRLKR 317

Length = 479

>gnl|CDD|237243 PRK12875, ubiA, prenyltransferase; Reviewed

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 54/236 (22%), Positives = 84/236 (35%), Gaps = 62/236 (26%)

Query: 12  LAPQQFADL-TPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKIN--KPDLPLA--SG 66
            A    ADL +P         + P    N++  GVN ++D + D++N  K         G
Sbjct: 33  YAADSVADLFSPAAVALFAYFLFPA---NVFLYGVNDVFDADTDELNPKKDREREVRYRG 89

Query: 67  DLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIM-WFVLSSAYSVDLPFLRWKRNPFL 125
           D  +   + ++      +LA+  +L  PP     ++ + VLS  YS   P LR+K  P L
Sbjct: 90  DRRVLVAVALS-----GALALAFLLVLPPAAWPALLAFLVLSVEYSA--PPLRFKTTPVL 142

Query: 126 ----------------ATMYGVLERGLAMPLGYF----MHIQAQVRAWKTYRVFKNIDVC 165
                           A + G L   LA+  G+     MH             F  I   
Sbjct: 143 DSLSNGLYILPGVAAYALVSGSLPPLLAVAGGWLWAMGMHT------------FSAI--- 187

Query: 166 SGCQVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFL 221
                   PD++ D+  GI+T +  LG+ +         L    A     A    L
Sbjct: 188 --------PDIEPDRAAGIRTTATVLGERRTYAYCAACWL---LAAAAFAAVDLRL 232

Length = 282

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 20/163 (12%)

Query: 45  VNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWF 104
           +N  +D EIDKIN+P+ PL  G +S  A +  +     + LA+  ++     +  +  + 
Sbjct: 56  INDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYV 115

Query: 105 VLSSAYSVDLPFLRWKRNPFLATM------YGVLERGLAMPLGYFMHIQAQVRAWKTYRV 158
            L   Y+  L  L +  N  +A +      YG +  G     GY       V   +   +
Sbjct: 116 -LMFLYAWKLKPLPFIGNVVVALLTGATPIYGAIAVGRIGLAGYLAICAFLVNVAR--EI 172

Query: 159 FKNIDVCSGCQVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGV 201
            K+I+           D++GDK  G +TL I +GK++  ++G 
Sbjct: 173 MKDIE-----------DIEGDKAKGAKTLPIIIGKKRAAYIGA 204

Length = 277

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 45  VNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWF 104
           +N +YD+EIDKINKP+ P+ SG +S+      + T  ++ L + I +     +  ++   
Sbjct: 56  INDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNSI 115

Query: 105 VL 106
           +L
Sbjct: 116 LL 117

Length = 279

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 46  NQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFV 105
           N  +D E+D+IN+PD P+ SG +S    + +     ++ L    ++     +  I++  +
Sbjct: 57  NDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVSVL 116

Length = 279

>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 9/89 (10%)

Query: 45  VNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIML-------RSPPLI 97
           VN  +D+E+D++N+P  P+ SG LS    +  +   LL+++ +G+ L       R   +I
Sbjct: 69  VNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVII 128

Query: 98  STIIMWFVLSSAYSVDLPFLRWKRNPFLA 126
           S+I+    ++  YS   P L+ K+N   +
Sbjct: 129 SSILAGLFVAYIYSA--PPLKLKKNILTS 155

Length = 331

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 16/185 (8%)

Query: 27  GLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLA 86
            ++  ++ G  +  Y   +N  YD EID IN+P  P+ SG +S    IT     LL  L 
Sbjct: 124 SIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLG 183

Query: 87  IGIML------RSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMP- 139
           +   L        P +    +   +LS  YS   P L+ K+N ++   Y +    +++P 
Sbjct: 184 LAYTLDVWAGHDFPIVFYLALGGSLLSYIYSA--PPLKLKQNGWIGN-YALGASYISLPW 240

Query: 140 ---LGYFMHIQAQVRAWKTYRVFKNIDVCSGCQVLDMPDVDGDKEHGIQTLSIALGKEKV 196
                 F  +   V           + +     V D   ++GD+  G+Q+L +A G E  
Sbjct: 241 WAGQALFGTLTPDVVVLTLLYSIAGLGIAI---VNDFKSIEGDRALGLQSLPVAFGVETA 297

Query: 197 LWLGV 201
            W+ V
Sbjct: 298 KWICV 302

Length = 375

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	100.0
PRK12876	300	ubiA prenyltransferase; Reviewed	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.98
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.98
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.97
PRK12873	294	ubiA prenyltransferase; Reviewed	99.97
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.97
PRK05951	296	ubiA prenyltransferase; Reviewed	99.97
PLN00012	375	chlorophyll synthetase; Provisional	99.97
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.97
PRK13595	292	ubiA prenyltransferase; Provisional	99.97
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.97
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.97
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.96
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.96
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.96
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.95
PRK13591	307	ubiA prenyltransferase; Provisional	99.95
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.95
PRK12872	285	ubiA prenyltransferase; Reviewed	99.95
PRK12871	297	ubiA prenyltransferase; Reviewed	99.95
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.94
PLN02922	315	prenyltransferase	99.94
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.94
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.94
PRK13592	299	ubiA prenyltransferase; Provisional	99.93
PLN02776	341	prenyltransferase	99.93
PRK13105	282	ubiA prenyltransferase; Reviewed	99.92
PRK12875	282	ubiA prenyltransferase; Reviewed	99.91
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.91
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.9
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.82
PRK08238	479	hypothetical protein; Validated	99.81
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.13
KOG4581	359	consensus Predicted membrane protein [Function unk	98.88
PRK13591	307	ubiA prenyltransferase; Provisional	94.23
PRK12872	285	ubiA prenyltransferase; Reviewed	93.88
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	93.72
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	91.35
PLN00012	375	chlorophyll synthetase; Provisional	89.95
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	89.78
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	89.72
PRK12875	282	ubiA prenyltransferase; Reviewed	89.66
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	89.46
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	89.37
PRK13105	282	ubiA prenyltransferase; Reviewed	89.06
PRK12392	331	bacteriochlorophyll c synthase; Provisional	88.89
PLN02922	315	prenyltransferase	88.18
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	87.72
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	87.47
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	87.21
PRK12884	279	ubiA prenyltransferase; Reviewed	86.61
PRK12886	291	ubiA prenyltransferase; Reviewed	85.94
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	85.9
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	85.77
PRK12888	284	ubiA prenyltransferase; Reviewed	85.65
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	85.43
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	85.37
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	83.93
PRK13106	300	ubiA prenyltransferase; Reviewed	83.55
PRK12882	276	ubiA prenyltransferase; Reviewed	83.46
PRK12874	291	ubiA prenyltransferase; Reviewed	83.22
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	82.6
PRK12871	297	ubiA prenyltransferase; Reviewed	82.38
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	82.26
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	81.53

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=4.9e-52  Score=362.50  Aligned_cols=259  Identities=47%  Similarity=0.823  Sum_probs=231.3

Q ss_pred             chhhhhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHH
Q 044153            4 IDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLM   83 (262)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l   83 (262)
                      ++.+|++.+|.+..+|+++.++++.+..++++++++.+..++|||+|+|+||+|||+||+|||++|+++++..+..+.++
T Consensus         1 l~~~~~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~l   80 (280)
T PLN02878          1 LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIM   80 (280)
T ss_pred             CchhHHhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc----hhHHHH
Q 044153           84 SLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW----KTYRVF  159 (262)
Q Consensus        84 ~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~  159 (262)
                      |+.+++..|++++.+....++++++.||.+.||+|+||+++.+.++.....++.+.+|+|.|.+..+++.    ++..++
T Consensus        81 g~~la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~  160 (280)
T PLN02878         81 SFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIF  160 (280)
T ss_pred             HHHHHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHH
Confidence            9999999998777777667778999999778999999999998888877777778889998877767763    223343


Q ss_pred             HHHHHHHHH----hhhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 044153          160 KNIDVCSGC----QVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLA  235 (262)
Q Consensus       160 ~~~~~~~~~----~~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  235 (262)
                      ...+...+.    .+||+||+||||+.|+||+|+++|+|++.+++..++.++|+..+..+......+...++..+|.+++
T Consensus       161 ~~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~  240 (280)
T PLN02878        161 ATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILA  240 (280)
T ss_pred             HHHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            333433333    3999999999999999999999999999999999999999988888877776777888999999999


Q ss_pred             HHHHHHhhcccCCChHHHHHHHHhhcC
Q 044153          236 FLLLQRARNVDVSSQAAILSFYRFIWK  262 (262)
Q Consensus       236 ~~l~~~~~~~d~~~~~~~~~f~~~~~~  262 (262)
                      ..+|+|.+++|.+++++..+|||||||
T Consensus       241 ~~L~~rs~~vD~~sk~~i~~fY~fiwk  267 (280)
T PLN02878        241 SILWQRAQSVDLSSKAAITSFYMFIWK  267 (280)
T ss_pred             HHHHHHhHhcCcccHHHHHHHHHHHHH
Confidence            999999999999999999999999998

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=1.3e-44  Score=325.01  Aligned_cols=236  Identities=35%  Similarity=0.517  Sum_probs=192.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 044153           24 FFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMW  103 (262)
Q Consensus        24 ~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~  103 (262)
                      .+...+..++.....+.+.+++|||+|+|+|++|||+||++||++|+++++....++.++++.+++..|++.+..+ +++
T Consensus        51 ~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~-~~~  129 (308)
T PRK12887         51 NLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITV-GIS  129 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHH
Confidence            4555566666666666666669999999999999999999999999999999999999999999988887766665 478


Q ss_pred             HHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhc--c-hhHHHHHHH--HHHH--HHhhhcCCCh
Q 044153          104 FVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRA--W-KTYRVFKNI--DVCS--GCQVLDMPDV  176 (262)
Q Consensus       104 ~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~--~-~~~~~~~~~--~~~~--~~~~~~~~D~  176 (262)
                      .+++++||  .||+|+||+|+.++++.+..+|..+..|.+.+......+  . +...++...  +++.  ..+.||++|+
T Consensus       130 ~~lg~~Ys--~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~  207 (308)
T PRK12887        130 LLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDM  207 (308)
T ss_pred             HHHHHHHc--CCchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            89999999  699999999999998888777776666765542221111  1 233232222  2333  3339999999


Q ss_pred             hhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHH
Q 044153          177 DGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSF  256 (262)
Q Consensus       177 e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f  256 (262)
                      |||++.|+||+|+++|+|++.+++..++.++|+..++.+.....++...++..+|.+.+..+++|.+++|.+|+++..+|
T Consensus       208 egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (308)
T PRK12887        208 EGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQF  287 (308)
T ss_pred             hhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHH
Confidence            99999999999999999999999999999999988887776666666666779999999999999999999999999999


Q ss_pred             HHhhcC
Q 044153          257 YRFIWK  262 (262)
Q Consensus       257 ~~~~~~  262 (262)
                      ||||||
T Consensus       288 y~~iw~  293 (308)
T PRK12887        288 YQFIWK  293 (308)
T ss_pred             HHHHHH
Confidence            999998

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.4e-33  Score=250.51  Aligned_cols=215  Identities=18%  Similarity=0.219  Sum_probs=170.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhchhhhhcC--CCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 044153           28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKIN--KPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFV  105 (262)
Q Consensus        28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n--~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~  105 (262)
                      .++.+++.+++++++|++||+.|+|+|++|  +|+||+|+|++|++||+.++.++.++++.+++.+|+.++..+. ....
T Consensus        39 l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~  117 (286)
T PRK12895         39 ILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIF  117 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHH
Confidence            455677889999999999999999999998  6899999999999999999999999999988888988877664 4566


Q ss_pred             HHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-h--hH--HHHHHHHHH--HHHhhhcCCChhh
Q 044153          106 LSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-K--TY--RVFKNIDVC--SGCQVLDMPDVDG  178 (262)
Q Consensus       106 ~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~--~~--~~~~~~~~~--~~~~~~~~~D~e~  178 (262)
                      +...|+      .+||++..+++..+...+..+.+|+..     +.++ +  ..  .++...++|  .++++|++||+|+
T Consensus       118 l~~~yp------~~KR~t~~~~~~lG~~~g~~~l~g~~A-----v~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~  186 (286)
T PRK12895        118 LFIIDP------FLKRYTAWRHIYMGSIIGLGVLAGYLA-----VIPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEY  186 (286)
T ss_pred             HHHHHH------HHHhCccccHHHHHHHHHhHHHHHHHH-----HcCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence            677787      489999999988888777655555532     3333 2  11  222233333  4566999999999


Q ss_pred             hHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHH-HHHH
Q 044153          179 DKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAI-LSFY  257 (262)
Q Consensus       179 D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~-~~f~  257 (262)
                      |++.|+||+|+++|++++.++...+..++.....+.+....    ..++.++..+.+..+.+|++.+|.+|+++| +.||
T Consensus       187 D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~----~~~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F  262 (286)
T PRK12895        187 DKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR----TLWYLAALIIIYTLVIYQHLIIDPRNPINKRMSFF  262 (286)
T ss_pred             HHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            99999999999999999987777777777766666664432    235667778888999999999999999999 6766


Q ss_pred             H
Q 044153          258 R  258 (262)
Q Consensus       258 ~  258 (262)
                      +
T Consensus       263 ~  263 (286)
T PRK12895        263 N  263 (286)
T ss_pred             H
Confidence            4

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.2e-32  Score=245.06  Aligned_cols=216  Identities=17%  Similarity=0.166  Sum_probs=167.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 044153           27 GLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWF  104 (262)
Q Consensus        27 ~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~  104 (262)
                      .+++++++.+++++++|++|||+|+|+|++|+  |+||+|+|++|++|++.++..+..+++.++...|+.++..+. .++
T Consensus        40 ~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~-~~~  118 (284)
T PRK12888         40 DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAP-LAV  118 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHH
Confidence            35678899999999999999999999999987  899999999999999999888888888888778877776664 456


Q ss_pred             HHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-h-h-HHHHHHHHHHH--HHhhhcCCChhhh
Q 044153          105 VLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-K-T-YRVFKNIDVCS--GCQVLDMPDVDGD  179 (262)
Q Consensus       105 ~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~-~-~~~~~~~~~~~--~~~~~~~~D~e~D  179 (262)
                      +....|++      .||++..+++..+...+..+..|+..     +.|+ + . .......++|.  +.++|++||+|+|
T Consensus       119 ~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g~~a-----~~g~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D  187 (284)
T PRK12888        119 APLVVYPY------AKRFTNFPHAILGLAQAVGPVGAWIA-----VTGTWSWPAVLLGLAVGLWIGGFDLIYACQDAEVD  187 (284)
T ss_pred             HHHHHHHH------hhcccchhhHHHHHHHHHHHHHHHHH-----HcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            66789984      79999999998888777655555432     2233 2 2 22222333443  4459999999999


Q ss_pred             HHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHH-HHH
Q 044153          180 KEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAIL-SFY  257 (262)
Q Consensus       180 ~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~-~f~  257 (262)
                      ++.|+||+|+++|+|++.++...+..++++...+.+.....++   ++..+..+....+.+|++.+|.+|++.|. .||
T Consensus       188 ~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff  263 (284)
T PRK12888        188 RRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGA---LWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFF  263 (284)
T ss_pred             HHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence            9999999999999999988777777777766666655544443   45556677788899999999999988776 665

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=100.00  E-value=1.7e-32  Score=244.34  Aligned_cols=215  Identities=22%  Similarity=0.226  Sum_probs=167.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 044153           28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFV  105 (262)
Q Consensus        28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~  105 (262)
                      .++++++.+++++++|++||++|+|+|++|+  |+||+|+|++|++|++.+..++.++++.+.+..|+.++..+. .+++
T Consensus        47 l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~  125 (289)
T PLN02809         47 LALFGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGA-SSLL  125 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHH
Confidence            4678899999999999999999999999864  799999999999999999999999999998888887777765 5677


Q ss_pred             HHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-h-hHH--HHHHHHHHH--HHhhhcCCChhhh
Q 044153          106 LSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-K-TYR--VFKNIDVCS--GCQVLDMPDVDGD  179 (262)
Q Consensus       106 ~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~-~~~--~~~~~~~~~--~~~~~~~~D~e~D  179 (262)
                      ....||.      +||++..+++..+...+..+..|+..     +.+. + ...  ++...++|.  +.+++++||+|+|
T Consensus       126 ~~~~Y~~------~KR~t~~~~~~lg~~~~~~~l~g~~a-----v~g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D  194 (289)
T PLN02809        126 LVFTYPL------MKRFTFWPQAFLGLTFNWGALLGWAA-----VKGSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDD  194 (289)
T ss_pred             HHHHHhH------HHhcCcchHHHHHHHHHHHHHHHHHH-----HhCCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhH
Confidence            7899994      89999999988877776655555422     3343 2 222  222223333  4559999999999


Q ss_pred             HHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHH
Q 044153          180 KEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYR  258 (262)
Q Consensus       180 ~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~  258 (262)
                      +|.|+||+|+++|+++...++ .+..+++..+...+.....+.   .+.+++......+.+|++.+|.+|+++|.+.|+
T Consensus       195 ~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~  269 (289)
T PLN02809        195 LKVGVKSTALRFGDDTKLWLT-GFGAASIGGLALSGYNAGLGW---PYYAGLAAAAGHLAWQIQTVDLSSRADCNRKFV  269 (289)
T ss_pred             HhCCCcccchhhcHHHHHHHH-HHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            999999999999999665554 466666666656665444332   344577888889999999999999999988875

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=1.6e-32  Score=244.42  Aligned_cols=217  Identities=18%  Similarity=0.229  Sum_probs=166.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhchhhhhcC--CCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 044153           27 GLLKAIVPGLLVNIYEVGVNQLYDVEIDKIN--KPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWF  104 (262)
Q Consensus        27 ~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n--~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~  104 (262)
                      ..++++++.+++++++|++|||+|+|+|++|  +|+||+|+|++|++|++.++.++.++++.++..+|+.+..++. .+.
T Consensus        37 ~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~  115 (282)
T TIGR01475        37 TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILSLALFLSASYFLNPLAFILSP-LVL  115 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHH
Confidence            3567888999999999999999999999997  6999999999999999999888887788888777877766554 456


Q ss_pred             HHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-h--h--HHHHHHHHHHHH--HhhhcCCChh
Q 044153          105 VLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-K--T--YRVFKNIDVCSG--CQVLDMPDVD  177 (262)
Q Consensus       105 ~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~--~--~~~~~~~~~~~~--~~~~~~~D~e  177 (262)
                      +..+.||.      +||++..+++..+...+.++..|+..     +.+. +  .  .......+++..  .++|++||+|
T Consensus       116 ~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~a-----~~g~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e  184 (282)
T TIGR01475       116 LVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWVA-----VIGTISFFLVAWLLGIGVGFWIAGFDLIYAIQDYE  184 (282)
T ss_pred             HHHHHHhh------HhccccccHHHHHHHHHHHHHHHHHH-----HhCCccchHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            67889994      89999999999888777665566533     2222 2  1  122233344443  3499999999


Q ss_pred             hhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHH-H
Q 044153          178 GDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILS-F  256 (262)
Q Consensus       178 ~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~-f  256 (262)
                      +|+++|+||+|+++|+|++++....+..+++....+.+.....++   .+.++..+....+.++.+..|.+|+++|++ |
T Consensus       185 ~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f  261 (282)
T TIGR01475       185 FDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGY---IALLALILIGLILAYEHYIVDPGDQSKIQRAF  261 (282)
T ss_pred             hHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            999999999999999999988888877777777766665544333   344455555677888888889999988876 5


Q ss_pred             HH
Q 044153          257 YR  258 (262)
Q Consensus       257 ~~  258 (262)
                      +.
T Consensus       262 f~  263 (282)
T TIGR01475       262 FY  263 (282)
T ss_pred             HH
Confidence            44

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=100.00  E-value=4e-32  Score=242.74  Aligned_cols=221  Identities=27%  Similarity=0.369  Sum_probs=177.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCC--CCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 044153           25 FIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKP--DLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIM  102 (262)
Q Consensus        25 ~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~--~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~  102 (262)
                      +...+++.+++++.++++|++||++|+|+||+|+|  +||+|||++|++|++.+..++.++++.+++.+|++++.+.+ .
T Consensus        46 ~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~-~  124 (289)
T COG0382          46 LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSL-A  124 (289)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-H
Confidence            66778889999999999999999999999999997  99999999999999999999999999999999988877664 6


Q ss_pred             HHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc---hhHHHHHHHHHHH--HHhhhcCCChh
Q 044153          103 WFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW---KTYRVFKNIDVCS--GCQVLDMPDVD  177 (262)
Q Consensus       103 ~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~D~e  177 (262)
                      +.++.+.|+      ++||.++.++++.+..++..+..|+..     ..++   +.+..+...++++  ++.+|+++|+|
T Consensus       125 ~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~~~~~g~~a-----~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e  193 (289)
T COG0382         125 ALVLALAYP------FLKRFTFLPQLVLGLAFGLGALAGAAA-----VGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIE  193 (289)
T ss_pred             HHHHHHHHH------HhhcCCchHHHHHHHHHHHHHHHHHHH-----HhCccchHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence            889999996      699999999999988888766666532     3332   2233333334444  44499999999


Q ss_pred             hhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHH
Q 044153          178 GDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFY  257 (262)
Q Consensus       178 ~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~  257 (262)
                      +|++.|+||+|+.+|++++..++.... ...+.+..++.....  ...++..++.+....+.++....|.+|++.|+.++
T Consensus       194 ~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (289)
T COG0382         194 GDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGL--LGLIYLLGLLVAALLLLYQILIVDVRDPPACFALF  270 (289)
T ss_pred             chHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Confidence            999999999999999999998887776 334334444433321  11356777788888999999999988999999988


Q ss_pred             Hhh
Q 044153          258 RFI  260 (262)
Q Consensus       258 ~~~  260 (262)
                      ..-
T Consensus       271 ~~~  273 (289)
T COG0382         271 DVN  273 (289)
T ss_pred             HHh
Confidence            753

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.5e-32  Score=240.63  Aligned_cols=221  Identities=17%  Similarity=0.193  Sum_probs=165.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 044153           25 FIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIM  102 (262)
Q Consensus        25 ~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~  102 (262)
                      +..+++..++.+.+++++|++||+.|+|+|++|+  |+||+|+|++|++|++.++.++.+.++.++..+|+.++..+. .
T Consensus        46 ~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~  124 (300)
T PRK12876         46 IKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-L  124 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-H
Confidence            4556788999999999999999999999999987  799999999999999999987777788888888988887775 5


Q ss_pred             HHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhHHHHH---------HHHHHHHHhhhc
Q 044153          103 WFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTYRVFK---------NIDVCSGCQVLD  172 (262)
Q Consensus       103 ~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~---------~~~~~~~~~~~~  172 (262)
                      +++....||.      +||+++.+++..+...+..+..++..     +.++ ..+..+.         ..+...++++|+
T Consensus       125 ~~~~~~iY~~------~KR~t~~~~~vLGl~~~~~~l~~~~A-----v~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa  193 (300)
T PRK12876        125 STLLMIIYPY------TKRVTFLCHWILGLVYYLAILMNFFA-----IIETPLSFSLFCMASLWGISFGMIIAANDIIYA  193 (300)
T ss_pred             HHHHHHHHHh------HhcCCchhHHHHHHHHHHHHHHHHHH-----HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677789994      99999999988877776544445432     2222 1111111         112224566999


Q ss_pred             CCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH--HHHHHHHHHhhcccCCCh
Q 044153          173 MPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHS--TLAFLLLQRARNVDVSSQ  250 (262)
Q Consensus       173 ~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~d~~~~  250 (262)
                      +||+|+|++.|+||+|+++|++++..+...+..++.+.+++.+.....++  .++..+..  .....+.+|.+.+|.+++
T Consensus       194 ~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~--~~y~~~~~~~~~~l~~~~~~~~~~~~~~  271 (300)
T PRK12876        194 IQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKK--IFYLCSLVPLTVILKTIKHYSLIDKKKS  271 (300)
T ss_pred             HcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence            99999999999999999999998877777777777776666665554443  23444443  223334666577777789


Q ss_pred             HHHHHHHHh
Q 044153          251 AAILSFYRF  259 (262)
Q Consensus       251 ~~~~~f~~~  259 (262)
                      +.|+.||+.
T Consensus       272 ~~~~~~F~~  280 (300)
T PRK12876        272 TLEQKFFLG  280 (300)
T ss_pred             HHHHHHHHh
Confidence            999999874

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.6e-32  Score=241.56  Aligned_cols=217  Identities=21%  Similarity=0.268  Sum_probs=158.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 044153           28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLS  107 (262)
Q Consensus        28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~  107 (262)
                      .++++++.++.++++|++|||+|+|+|++|+|+||+++|++|++|++.++.++.++++.+++..|+.++.++. .+.++.
T Consensus        40 ~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~-~~~~~~  118 (276)
T PRK12882         40 TGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLAIAL-FNSLLL  118 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHH
Confidence            5678889999999999999999999999999999999999999999999999999999998888877766654 566778


Q ss_pred             hhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc--hh--HHHHHHHHHHHHH--hhhcCCChhhhHH
Q 044153          108 SAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW--KT--YRVFKNIDVCSGC--QVLDMPDVDGDKE  181 (262)
Q Consensus       108 ~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~--~~--~~~~~~~~~~~~~--~~~~~~D~e~D~~  181 (262)
                      +.||.     |+||++..+++..+...|..+..|..      ..+.  +.  ...+...+++.+.  ++||+||+|+|++
T Consensus       119 ~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~------~~~~~~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~  187 (276)
T PRK12882        119 VLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGA------AVGTEGLLALLVLFALAALATLAREIIKDVEDIEGDRA  187 (276)
T ss_pred             HHHHH-----HHhcccchhHHHHHHHHHHHHHHHHH------HhcccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence            99996     89999988888776655543333322      1221  11  1222233444333  3999999999999


Q ss_pred             cCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH-HHHHHHHhhcccCCChHHHHHHHHh
Q 044153          182 HGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTL-AFLLLQRARNVDVSSQAAILSFYRF  259 (262)
Q Consensus       182 ~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~d~~~~~~~~~f~~~  259 (262)
                      +|+||+|+++|+|++.++...+.........+.......++   .|.+..... ...+....+..|.+|++.|+++|++
T Consensus       188 ~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~  263 (276)
T PRK12882        188 EGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLSTFGL---WYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLKY  263 (276)
T ss_pred             cCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            99999999999999998877776555544433222222222   333333333 3344445666777888899888875

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=2.7e-31  Score=236.75  Aligned_cols=178  Identities=21%  Similarity=0.261  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHH
Q 044153           28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPP-LISTIIMWFVL  106 (262)
Q Consensus        28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~-~~~~~~~~~~~  106 (262)
                      ++.+++++.+.++++|.+|||+|+|+|++|+|+||+++|++|+++++.+..++..+++.++..++.+. ..++ ..+.+.
T Consensus        40 ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~-~~~~~~  118 (283)
T TIGR01476        40 LLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVLGNWLIVLFT-VVGIVL  118 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            44477899999999999999999999999999999999999999999999999999998888777666 3443 457778


Q ss_pred             HhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhHHH--HHHHHHHH--HHhhhcCCChhhhHH
Q 044153          107 SSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTYRV--FKNIDVCS--GCQVLDMPDVDGDKE  181 (262)
Q Consensus       107 ~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~--~~~~~~~~--~~~~~~~~D~e~D~~  181 (262)
                      +++||  .||+|+||+++.+++..+..++.....+.+.     ..+. +...+  .....++.  ....||+||+|+|++
T Consensus       119 ~~~Ys--~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~  191 (283)
T TIGR01476       119 AVIYS--MPPIKLKRNGWLGPPAVGLSYEGLPWMAGHA-----IFAPLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQ  191 (283)
T ss_pred             hheec--CchhhhccCCCccHHHHHHHHHHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHH
Confidence            99999  5999999999888888776554221111111     1122 12111  11112222  233999999999999


Q ss_pred             cCCcccceeechHHHHHHHHHHHHHHHHHHHH
Q 044153          182 HGIQTLSIALGKEKVLWLGVYMLLVVYGALVI  213 (262)
Q Consensus       182 ~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~  213 (262)
                      +|+||+|+++|+|++++++..+....+...+.
T Consensus       192 ~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~  223 (283)
T TIGR01476       192 LGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG  223 (283)
T ss_pred             cCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888877777765554

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=8.6e-32  Score=240.39  Aligned_cols=216  Identities=20%  Similarity=0.211  Sum_probs=163.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 044153           28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFV  105 (262)
Q Consensus        28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~  105 (262)
                      .++++++.+++++++|++|||+|+|+|++++  ++||+|+|++|++|+..++.++.++++.++..+|+.++.++. .+.+
T Consensus        48 ~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~  126 (290)
T PRK12870         48 VGIIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCV-AAVP  126 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHH
Confidence            4677889999999999999999999998743  589999999999999999999999999998888887777764 5667


Q ss_pred             HHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh--HHHHHHHHHHH--HHhhhcCCChhhhH
Q 044153          106 LSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT--YRVFKNIDVCS--GCQVLDMPDVDGDK  180 (262)
Q Consensus       106 ~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~--~~~~~~~~~~~--~~~~~~~~D~e~D~  180 (262)
                      ....||.      .||++..+++..+..++..+..|+..     ..++ +.  .......++|.  +.+.|++||+|+|+
T Consensus       127 ~~~~Y~~------~KR~t~~~~~~lg~~~~~~~l~g~~a-----~~g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~  195 (290)
T PRK12870        127 VIFLYPL------AKRVFPVPQLVLAIAWGFAVLISWSA-----VTGHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDL  195 (290)
T ss_pred             HHHHhhh------hhhccccceeeehHHHHhHHHHHHHH-----HcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHH
Confidence            7899994      79998888888777777655555432     2333 22  22223334444  34499999999999


Q ss_pred             HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcc--cCCChHHHHHHHH
Q 044153          181 EHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNV--DVSSQAAILSFYR  258 (262)
Q Consensus       181 ~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--d~~~~~~~~~f~~  258 (262)
                      +.|+||+|+++|++++.++.. +..+....+...+.....++   +|..+.......+.++..++  |.+|++.|++||+
T Consensus       196 ~~G~~slav~~G~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~  271 (290)
T PRK12870        196 RIGVNSSAIFFGRYAPEAIGL-FFALTVGFLAILGVLLELHL---PFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFL  271 (290)
T ss_pred             HCCCcchhHHhccccHHHHHH-HHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHH
Confidence            999999999999998876655 34444444444454443332   34456666677888888777  8788999999886


Q ss_pred             h
Q 044153          259 F  259 (262)
Q Consensus       259 ~  259 (262)
                      .
T Consensus       272 ~  272 (290)
T PRK12870        272 Q  272 (290)
T ss_pred             H
Confidence            3

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=1.3e-31  Score=238.39  Aligned_cols=216  Identities=20%  Similarity=0.275  Sum_probs=157.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 044153           27 GLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVL  106 (262)
Q Consensus        27 ~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~  106 (262)
                      ..++++++.++.++++|++|||+|+|+|++|+|+||+|+|++|++|++.++.++..+++.+++..|+.++..+. .+.+.
T Consensus        38 ~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~~  116 (279)
T PRK09573         38 GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIAL-LNSIL  116 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999888888887777664 56677


Q ss_pred             HhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhHHHHHHHHHHHHHh--hhcCCChhhhHHcC
Q 044153          107 SSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTYRVFKNIDVCSGCQ--VLDMPDVDGDKEHG  183 (262)
Q Consensus       107 ~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~D~e~D~~~G  183 (262)
                      .++||.     ++||++..+++..+...|..+..|+..     +.+. +....+...+++.+..  .||+||+|+|+++|
T Consensus       117 ~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~-----~~~~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G  186 (279)
T PRK09573        117 LYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLA-----VFNVLRIIILFLCAFFSTWSREIVKDIEDIEGDLKEN  186 (279)
T ss_pred             HHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHH-----HccchHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCC
Confidence            899995     689999989998888777655555432     2222 2223333445555444  79999999999999


Q ss_pred             CcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH-hhcccCCChHHHHHH
Q 044153          184 IQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQR-ARNVDVSSQAAILSF  256 (262)
Q Consensus       184 ~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~d~~~~~~~~~f  256 (262)
                      +||+|+++|+|++.++...+.........+.....   .....|.++..+....+.++ .+..+.+|++.|...
T Consensus       187 ~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  257 (279)
T PRK09573        187 VITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLG---IFGIYYLIVVIICDILFIIAMLILLKNPSIEGASKA  257 (279)
T ss_pred             CccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHH
Confidence            99999999999999887766655555444332222   12234444444444444444 333344556655544

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.4e-31  Score=236.56  Aligned_cols=217  Identities=17%  Similarity=0.255  Sum_probs=158.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 044153           26 IGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFV  105 (262)
Q Consensus        26 ~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~  105 (262)
                      ...++.+++.++.++++|++|||+|+|+|++|+|+||+++|++|+++++.++.++.++++.++..+|+..+...+ .+.+
T Consensus        37 ~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~  115 (279)
T PRK12884         37 DEALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVI-LVSV  115 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHH
Confidence            345677899999999999999999999999999999999999999999999999999999888888877766654 5777


Q ss_pred             HHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcch-h-HHHHHHHHHHHHH--hhhcCCChhhhHH
Q 044153          106 LSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAWK-T-YRVFKNIDVCSGC--QVLDMPDVDGDKE  181 (262)
Q Consensus       106 ~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~-~-~~~~~~~~~~~~~--~~~~~~D~e~D~~  181 (262)
                      .++.||.     ++||+++.++++.+..++.++..++..     ..+.+ . .......+++...  ..+|++|+|+|++
T Consensus       116 ~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~  185 (279)
T PRK12884        116 LGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA-----VGELNEAVILLAAMAFLMTLGREIMKDIEDVEGDRL  185 (279)
T ss_pred             HHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH-----hCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            8999996     689999888988887777554444322     11212 1 2222233444433  3999999999999


Q ss_pred             cCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHh-hcccCCChHHHHHH
Q 044153          182 HGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRA-RNVDVSSQAAILSF  256 (262)
Q Consensus       182 ~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~d~~~~~~~~~f  256 (262)
                      +|+||+|+++|+|++.++...+....++........+..++   .|.....+....+.++. +..+.+|++.++.+
T Consensus       186 ~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  258 (279)
T PRK12884        186 RGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNI---LYLAPVLVADLIFLYSAYSLLRSQDRETIRKV  258 (279)
T ss_pred             cCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            99999999999999998887777766665544443332232   34434344444444443 44455556655554

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.3e-31  Score=236.65  Aligned_cols=218  Identities=20%  Similarity=0.191  Sum_probs=162.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 044153           27 GLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWF  104 (262)
Q Consensus        27 ~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~  104 (262)
                      ..++++++.+++++++|++|||+|+|+|++|+  |+||+|+|++|++|++.+...+.+.++.+....|+++..++. .+.
T Consensus        43 ~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~  121 (291)
T PRK12886         43 QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PAL  121 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            35667889999999999999999999999976  799999999999999988766666666666677877777664 466


Q ss_pred             HHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc---hhHHHHHHHHHHH--HHhhhcCCChhhh
Q 044153          105 VLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW---KTYRVFKNIDVCS--GCQVLDMPDVDGD  179 (262)
Q Consensus       105 ~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~D~e~D  179 (262)
                      +....||.      .||++..+++..+...+.++..|+..     ..|+   ++...+...++|.  +.+.++++|+|+|
T Consensus       122 ~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~g~~a-----~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D  190 (291)
T PRK12886        122 FFLLLYSY------CKRFTALAHVVLGFCLALAPLGAWIA-----IRGTIELPAILLGLAVLFWVAGFDILYALQDLEFD  190 (291)
T ss_pred             HHHHHHhh------hhccccccHHHHHHHHHHHHHHHHHH-----HcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHhH
Confidence            67899994      79999999998888777655555432     2333   2222333344454  3348999999999


Q ss_pred             HHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCC-hHHHHHHHH
Q 044153          180 KEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSS-QAAILSFYR  258 (262)
Q Consensus       180 ~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~-~~~~~~f~~  258 (262)
                      +++|+||+|+++|++++.++...+..+.+...++.+.....++   .|.++..+....+.++.+..+.+| ++.|+++|+
T Consensus       191 ~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~  267 (291)
T PRK12886        191 RKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGP---WFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFN  267 (291)
T ss_pred             HHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence            9999999999999999988877777777766666655444333   344444455555667777778777 468888766


Q ss_pred             h
Q 044153          259 F  259 (262)
Q Consensus       259 ~  259 (262)
                      +
T Consensus       268 ~  268 (291)
T PRK12886        268 M  268 (291)
T ss_pred             H
Confidence            4

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.1e-31  Score=237.23  Aligned_cols=217  Identities=15%  Similarity=0.144  Sum_probs=162.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhchhhhhcC--CCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 044153           28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKIN--KPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFV  105 (262)
Q Consensus        28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n--~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~  105 (262)
                      .++++++.+++++++|++|||+|+|+|++|  +|+||+|+|++|++|++.+..++.+.++.+.+..|+.+...+. .+.+
T Consensus        51 l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~  129 (300)
T PRK13106         51 LILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVAL  129 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHH
Confidence            467788999999999999999999999997  5899999999999999998877777777777778887777664 4556


Q ss_pred             HHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHh--h-cc--hhHH-HHHHHHHHH--HHhhhcCCChh
Q 044153          106 LSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQV--R-AW--KTYR-VFKNIDVCS--GCQVLDMPDVD  177 (262)
Q Consensus       106 ~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~--~-~~--~~~~-~~~~~~~~~--~~~~~~~~D~e  177 (262)
                      ....||.      +||++..++++.+...+..+..|+........  . ..  +.+. ++...++|.  +.++|++||+|
T Consensus       130 ~~~~Y~~------~KR~t~~~~~~lg~~~~~~~~~G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e  203 (300)
T PRK13106        130 IAMSYPY------MKRYTAFANYHLASIQGLAVFSGAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAE  203 (300)
T ss_pred             HHHHHhH------HhcCCcchHHHHHHHHHHHHHHHHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchh
Confidence            6778994      89999999999888877655555532111000  0 00  1112 222233333  45599999999


Q ss_pred             hhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHH
Q 044153          178 GDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFY  257 (262)
Q Consensus       178 ~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~  257 (262)
                      +|+|.|+||+|+++| +++++++..+..++...+.+.+....+++   .|..+..+....+.+++...+.+  +.|...|
T Consensus       204 ~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg~---~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~F  277 (300)
T PRK13106        204 FDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLGP---IAIAATILHGLIMAYAYYLASKK--GDFGRAF  277 (300)
T ss_pred             hHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCc--hHHHHHH
Confidence            999999999999999 88888888888888887777766554443   45566667788888898888876  4454433

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=3.6e-31  Score=236.14  Aligned_cols=219  Identities=16%  Similarity=0.225  Sum_probs=162.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 044153           25 FIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIM  102 (262)
Q Consensus        25 ~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~  102 (262)
                      +...++++++.+++++++|++|||+|+|.|++|+  |+||+|+|++|++|++.++.++.++++.+.+..|+.++.++. .
T Consensus        44 ~~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~-~  122 (285)
T PRK12847         44 ISLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSF-I  122 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-H
Confidence            3446788899999999999999999999999744  799999999999999999999999999888888877777664 5


Q ss_pred             HHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh--HHHHHHHHHHHH--HhhhcCCChh
Q 044153          103 WFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT--YRVFKNIDVCSG--CQVLDMPDVD  177 (262)
Q Consensus       103 ~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~--~~~~~~~~~~~~--~~~~~~~D~e  177 (262)
                      +.+..+.||.      .||++..++++.+...+..+..++..     ..+. +.  ...+...+++..  ...+++||+|
T Consensus       123 ~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~l~~~~a-----~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e  191 (285)
T PRK12847        123 AVILIVLYPL------MKRFFYWPQLFLGFTFNMGILMAFAA-----VQNQLDIEAILLYIGCIFWTIGYDTIYAYQDKK  191 (285)
T ss_pred             HHHHHHhccc------cccCCcccHHHHHHHHHHHHHHHHHH-----HcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHh
Confidence            6777999994      79988888888877776554445432     2233 22  222333344443  3499999999


Q ss_pred             hhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHH
Q 044153          178 GDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFY  257 (262)
Q Consensus       178 ~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~  257 (262)
                      +|+++|+||+|+++|+|++.++........+...+........+   +++. +.......+.++....|.+|++.|++.|
T Consensus       192 ~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~y~-~~~~~~~~l~~~~~~~~~~~~~~~~~~f  267 (285)
T PRK12847        192 DDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHN---IFYL-AILAAAGIFYYQYKLLDFDNPANCMYAF  267 (285)
T ss_pred             hHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcH---HHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999999999999998887776655555444332222222   2232 3334455777788888888888888877


Q ss_pred             Hh
Q 044153          258 RF  259 (262)
Q Consensus       258 ~~  259 (262)
                      +.
T Consensus       268 ~~  269 (285)
T PRK12847        268 KA  269 (285)
T ss_pred             HH
Confidence            64

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4.3e-31  Score=235.80  Aligned_cols=218  Identities=18%  Similarity=0.227  Sum_probs=164.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 044153           26 IGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMW  103 (262)
Q Consensus        26 ~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~  103 (262)
                      ...+++.++.+++++++|++|||+|+|+|++|+  |+||+|||++|++|++.++.++.++++.+.+..|+.+...++ ..
T Consensus        47 ~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~-~~  125 (291)
T PRK12874         47 KLLILGILAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSF-PF  125 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HH
Confidence            345778889999999999999999999999976  899999999999999999988888888888888887777663 56


Q ss_pred             HHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh--HHHHHHHHHHHHH--hhhcCCChhh
Q 044153          104 FVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT--YRVFKNIDVCSGC--QVLDMPDVDG  178 (262)
Q Consensus       104 ~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~--~~~~~~~~~~~~~--~~~~~~D~e~  178 (262)
                      .+....||+      +||++..+++..+...+.++.+|+..     +.|. +.  ..++...++|...  +.|++||+|+
T Consensus       126 ~~~~~~Y~~------~KR~t~~~~~~~g~~~~~~~l~G~~a-----v~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~  194 (291)
T PRK12874        126 LIVLGGYSY------FKRFSSLAHLVLGLSLGLAPIAGVVA-----VLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEF  194 (291)
T ss_pred             HHHHHHHhh------hcccccccHHHHHHHHHHHHHHHHHH-----HcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            677889995      89999999999988888766666532     3333 22  2233333455443  3999999999


Q ss_pred             hHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHH
Q 044153          179 DKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYR  258 (262)
Q Consensus       179 D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~  258 (262)
                      |+++|+||+|+++|++++.+....+.....+.....+.....+   .++.++.......+.++.+..+.+|++.|+.||.
T Consensus       195 D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~  271 (291)
T PRK12874        195 DKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLG---LFAYLGVIVSALILLYEHYLVRKDFKKIDKAFFT  271 (291)
T ss_pred             HHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence            9999999999999999988776666555444444433322222   2344566666777888877777667778888765

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=4.5e-31  Score=234.94  Aligned_cols=216  Identities=19%  Similarity=0.282  Sum_probs=160.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 044153           28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFV  105 (262)
Q Consensus        28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~  105 (262)
                      .++++++.++.++++|++|||+|+|+|++|+  |+||+|+|++|++|++.++.++.++++.+++..|+.+..++. .+.+
T Consensus        42 ~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~  120 (281)
T TIGR01474        42 LGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGV-ASLA  120 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHH
Confidence            4667788899999999999999999998753  799999999999999999999999999998888887777764 6777


Q ss_pred             HHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh--HHHHHHHHHHHH--HhhhcCCChhhhH
Q 044153          106 LSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT--YRVFKNIDVCSG--CQVLDMPDVDGDK  180 (262)
Q Consensus       106 ~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~--~~~~~~~~~~~~--~~~~~~~D~e~D~  180 (262)
                      ..+.||.      .||++..+++..+...+..+..|+..     ..++ +.  ..++...+++..  ..+|++||+|+|+
T Consensus       121 ~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~a-----~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~  189 (281)
T TIGR01474       121 LVATYPF------MKRITYWPQLVLGLAFGWGALMGWAA-----VTGDLSTAAWVLYLANILWTLGYDTIYAMQDKEDDI  189 (281)
T ss_pred             HHHHhch------hcccccccHHHHHHHHHHHHHHHHHH-----HcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence            8999994      89999999988887777655556532     2333 22  222333344443  3499999999999


Q ss_pred             HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHh
Q 044153          181 EHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYRF  259 (262)
Q Consensus       181 ~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~  259 (262)
                      ++|+||+|+++|+|+++. ...+..+......+.......++   ++.++..+....+.++..+.|.+|++.|+++|+.
T Consensus       190 ~~G~~tlpv~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~  264 (281)
T TIGR01474       190 KIGVKSTALRFGDNTKPW-LGGLYALMILLLALAGLIAGLGP---VYYLGLAAAALLLIRQIATLDIRDPENCLKLFKA  264 (281)
T ss_pred             HcCCCcccHHhhhhhHHH-HHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999988654 33344333333333333333222   3445556667778888888888888889888875

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=1e-30  Score=236.74  Aligned_cols=186  Identities=22%  Similarity=0.308  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHH
Q 044153           29 LKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRS-------PPLISTII  101 (262)
Q Consensus        29 ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~-------~~~~~~~~  101 (262)
                      ...++.+.+..+++|++|||+|+|+|++|+|.||+++|++|++|++.+..++..+++.++..++.       +.+....+
T Consensus        53 ~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtRpl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~  132 (331)
T PRK12392         53 ALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSIL  132 (331)
T ss_pred             HHHHHHHHHHHHHHhHHhcceeecccccCCCCCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHH
Confidence            33455556677889999999999999999999999999999999999999888888777665542       22233224


Q ss_pred             HHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhH--HHHHHHHHHH--HHhhhcCCCh
Q 044153          102 MWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTY--RVFKNIDVCS--GCQVLDMPDV  176 (262)
Q Consensus       102 ~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~--~~~~~~~~~~--~~~~~~~~D~  176 (262)
                      .+++++++||  .||+++||+++.+++..+..++.....+..     ...++ +..  ......+++.  ..++||++|+
T Consensus       133 ~~l~l~~~YS--~~P~~lKr~~~~g~~~vGl~~~~~~~~~~~-----a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~  205 (331)
T PRK12392        133 AGLFVAYIYS--APPLKLKKNILTSAPAVGFSYGFITFLSAN-----ALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSV  205 (331)
T ss_pred             HHHHHhhhhc--CCchhhhccchhHHHHHHHHHHHHHHHHHH-----HHhcCCCHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            5678899999  599999999988887776666543332221     13333 222  2222223333  3349999999


Q ss_pred             hhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 044153          177 DGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFL  221 (262)
Q Consensus       177 e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~  221 (262)
                      |+|++.|+||+|+++|++++.++......++.+..+..+.....+
T Consensus       206 egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~  250 (331)
T PRK12392        206 EGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFT  250 (331)
T ss_pred             hhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999887766656666666655554444

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=7e-31  Score=233.87  Aligned_cols=215  Identities=19%  Similarity=0.221  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 044153           28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFV  105 (262)
Q Consensus        28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~  105 (262)
                      .++++++.++.++++|++|||+|+|+|++++  |+||+|||++|++|+..++.++..+++.+++.+|+.+..+++ .+.+
T Consensus        44 ~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~  122 (282)
T PRK12848         44 LVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSV-AALA  122 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHH
Confidence            4567788899999999999999999998744  689999999999999999999999998888888877777664 5667


Q ss_pred             HHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh--HHHHHHHHHHH--HHhhhcCCChhhhH
Q 044153          106 LSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT--YRVFKNIDVCS--GCQVLDMPDVDGDK  180 (262)
Q Consensus       106 ~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~--~~~~~~~~~~~--~~~~~~~~D~e~D~  180 (262)
                      ..+.||.      .||++..+++..+...+..+.+|+..     ..++ +.  ...+...+++.  ....+++||+|+|+
T Consensus       123 ~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~~~g~~a-----~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~  191 (282)
T PRK12848        123 LAWIYPF------MKRYTHLPQVVLGAAFGWGIPMAFAA-----VQGSVPLEAWLLFLANILWTVAYDTQYAMVDRDDDL  191 (282)
T ss_pred             HHHHHHh------HHhcCcccHHHHHHHHHHHHHHHHHH-----HhCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHH
Confidence            7899984      79988888888777777655556533     2233 22  22222223333  33489999999999


Q ss_pred             HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHH
Q 044153          181 EHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYR  258 (262)
Q Consensus       181 ~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~  258 (262)
                      ++|+||+|+++|+|++.+...... +......+.+.....+   ..|.++..+....+.++...+|.+|+++|+++|+
T Consensus       192 ~~G~~tlpv~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~  265 (282)
T PRK12848        192 KIGIKSTAILFGRYDKLIIGLLQL-ATLALLAWAGWLLGLG---WAYYWGLLVAAALFVYQQKLIRDREREACFKAFL  265 (282)
T ss_pred             HcCCccccHHhccccHHHHHHHHH-HHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            999999999999998877654333 3333333333332222   2345566677778888888999999888887774

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.98  E-value=1e-30  Score=235.64  Aligned_cols=217  Identities=16%  Similarity=0.165  Sum_probs=160.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 044153           27 GLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWF  104 (262)
Q Consensus        27 ~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~  104 (262)
                      ..++++++.+++++++|++|||+|+|+|++++  ++||+|+|++|++|++.+..++.++|+.+.+..|++++.+++ .+.
T Consensus        73 ~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~-~~~  151 (314)
T PRK12878         73 HLFLFFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGI-ASL  151 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHH
Confidence            46778899999999999999999999998744  799999999999999999999999999888888877777664 577


Q ss_pred             HHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-h-h-HHHHHHHHHHH--HHhhhcCCChhhh
Q 044153          105 VLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-K-T-YRVFKNIDVCS--GCQVLDMPDVDGD  179 (262)
Q Consensus       105 ~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~-~-~~~~~~~~~~~--~~~~~~~~D~e~D  179 (262)
                      +..+.||.      .||++..++...+...+..+..|++.     ..|+ + . ..++...+++.  ...++++||+|+|
T Consensus       152 ~~~~~Y~~------~KR~t~~~~~~~Gl~~~~~~l~g~~a-----~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D  220 (314)
T PRK12878        152 AIVAAYPF------MKRITWWPQFFLGLAFSWGALMGWAA-----HFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDD  220 (314)
T ss_pred             HHHHHHHH------HHhcCCcchHHHHHHHHHHHHHHHHH-----HhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhH
Confidence            77999994      89988887777776665555556543     2333 2 2 22223334444  3448999999999


Q ss_pred             HHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHh
Q 044153          180 KEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYRF  259 (262)
Q Consensus       180 ~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~  259 (262)
                      +++|+||+|+++|++++++......... ....+.......++   .+.++.......+.++..+.|.+|++.|+++|+.
T Consensus       221 ~~aGi~slpv~~G~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~  296 (314)
T PRK12878        221 ALIGVKSTARLFGDHTKTWLVLFYGLAV-LLMGLAFWLAGVPL---LALLGLLAAAAHLAWQIARLDIDDPDQCLRLFKS  296 (314)
T ss_pred             HHcCCcccchHhchhhHHHHHHHHHHHH-HHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHH
Confidence            9999999999999999987764443333 33333333333333   3334444445567888888888888889999874

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.98  E-value=1.2e-30  Score=235.54  Aligned_cols=177  Identities=20%  Similarity=0.266  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 044153           29 LKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSS  108 (262)
Q Consensus        29 ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~  108 (262)
                      +.++++..+.++++|++|||+|+|+|++|+|+||+++|++|+++++.+..++..+++.+++.+|++...+++ .+.+.++
T Consensus        68 l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l-~~~~~~~  146 (314)
T PRK07566         68 AGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAAL-LGLFLAW  146 (314)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHH-HHHHHHH
Confidence            456778888999999999999999999999999999999999999999999999999888888877666654 5777899


Q ss_pred             hccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhc-c-hhHHHHHH--HHHHH--HHhhhcCCChhhhHHc
Q 044153          109 AYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRA-W-KTYRVFKN--IDVCS--GCQVLDMPDVDGDKEH  182 (262)
Q Consensus       109 ~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~-~-~~~~~~~~--~~~~~--~~~~~~~~D~e~D~~~  182 (262)
                      +||  .||+++||+++.+++..+..++..+..+.+.    ...+ . +...++..  .+++.  ....||++|+|+|+++
T Consensus       147 ~Yt--~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~----~~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~a  220 (314)
T PRK07566        147 IYS--APPLRLKQNGWLGNYAVGLSYEGLPWWAGAA----AFGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQL  220 (314)
T ss_pred             Hhc--CCccccccccchhhHHHHHHHHHHHHHHHHH----HhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHc
Confidence            999  5999999999888888877665332222111    1211 1 11112111  11122  2339999999999999


Q ss_pred             CCcccceeechHHHHHHHHHHHHHHHHHHH
Q 044153          183 GIQTLSIALGKEKVLWLGVYMLLVVYGALV  212 (262)
Q Consensus       183 G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l  212 (262)
                      |+||+|+++|++++++++..++...++..+
T Consensus       221 G~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~  250 (314)
T PRK07566        221 GLRSLPVVFGEKNAARIACVVIDLFQLAVI  250 (314)
T ss_pred             CCcccceeEcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999888777777666553

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.97  E-value=9.5e-30  Score=228.91  Aligned_cols=224  Identities=23%  Similarity=0.253  Sum_probs=151.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHH
Q 044153           28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLR-------SPPLISTI  100 (262)
Q Consensus        28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~-------~~~~~~~~  100 (262)
                      .+.+++++.+.++++|.+|||+|+|.|++|+|+||+++|++|+++++..+..+..+++.++..+.       ++.+.++ 
T Consensus        56 ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~-  134 (306)
T TIGR02056        56 ALCMLLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLA-  134 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH-
Confidence            35556788999999999999999999999999999999999999999988888888777665542       2334444 


Q ss_pred             HHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh-HH-HHHHHHHHHHH--hhhcCCC
Q 044153          101 IMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT-YR-VFKNIDVCSGC--QVLDMPD  175 (262)
Q Consensus       101 ~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~--~~~~~~D  175 (262)
                      +.+++.+++||  .||+++||+++++++..+..++..+..+.+.     ..++ +. .. .....+++...  ..||+||
T Consensus       135 ~~~~~~~~~Yt--~gP~~lk~~g~~G~i~vg~~~~~~~~~~~~a-----~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D  207 (306)
T TIGR02056       135 LFGSFIAFIYS--APPLKLKQNGWLGNFALGASYIALPWWAGHA-----LFGELNPDIAVLTLIYSIAGLGIAIVNDFKS  207 (306)
T ss_pred             HHHHHHHHHHc--CChhhhhhcccHHHHHHHHHHHHHHHHHHHH-----HhCCCcHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            46778899999  5999999999888877665554322222111     2333 22 11 12222334433  3999999


Q ss_pred             hhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHH--HHHHHHHHHHHH-HHHHhhcccCCChH
Q 044153          176 VDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSP-FLESKL--ITIIGHSTLAFL-LLQRARNVDVSSQA  251 (262)
Q Consensus       176 ~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~~~--~~~~~~~~~~~~-l~~~~~~~d~~~~~  251 (262)
                      +|+|++.|+||+|+++|+|++++++..+...++...+....... .++..+  ....++...... +.++..+.|..-++
T Consensus       208 ~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~ll~~p~~~~~~~~~~~~~~~~~~~~~~  287 (306)
T TIGR02056       208 VEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLAIGENLYAAALVALIIPQITFQDKYFLKDPLKNDVKYQA  287 (306)
T ss_pred             hHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhChHhhCcchhh
Confidence            99999999999999999999999888777665654444332222 232211  122233332222 22233455666677


Q ss_pred             HHHHHHHh
Q 044153          252 AILSFYRF  259 (262)
Q Consensus       252 ~~~~f~~~  259 (262)
                      +.+.||..
T Consensus       288 ~~~~~~~~  295 (306)
T TIGR02056       288 SAQPFLVL  295 (306)
T ss_pred             hhhHHHHH
Confidence            88877753

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=4e-30  Score=228.72  Aligned_cols=217  Identities=19%  Similarity=0.125  Sum_probs=167.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHH
Q 044153           26 IGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIML----RSPPLIST   99 (262)
Q Consensus        26 ~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~----~~~~~~~~   99 (262)
                      ...++++++++++++++|++||+.|+|+|++|+  ++||+|+|++|++|++.+..++.++++.+.+.+    |+.++..+
T Consensus        44 ~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~  123 (294)
T PRK12873         44 LLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLA  123 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence            346788999999999999999999999999854  799999999999999999999999998887665    44566665


Q ss_pred             HHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-h--hHHHH--HHHHHHH--HHhhhc
Q 044153          100 IIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-K--TYRVF--KNIDVCS--GCQVLD  172 (262)
Q Consensus       100 ~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~--~~~~~--~~~~~~~--~~~~~~  172 (262)
                      . .+++....||.      +||++...+++.+...+.++.+|+-.     +.|+ +  ...++  ...++|.  +.++++
T Consensus       124 ~-~~~~~~~~Y~~------~KR~t~~~~~vlg~~~a~~~l~gw~A-----v~g~~~~~~~~l~l~~~~~~W~~~~d~iyA  191 (294)
T PRK12873        124 F-LALPPILIYPS------AKRWFAYPQAILALCWGFAVLIPWAA-----AEGSLNGGWPLLFCWLATLLWTFGFDTVYA  191 (294)
T ss_pred             H-HHHHHHHHHHH------HHhccccchHHHHHHHHhHHHHHHHH-----HhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 56667889994      89999999999888877666666532     3443 2  12222  2345555  455999


Q ss_pred             CCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCC--h
Q 044153          173 MPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSS--Q  250 (262)
Q Consensus       173 ~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~--~  250 (262)
                      ++|+|+|+++|+||+|+++|++ +......+..++.+.+..++.....++   +|.++....+..+.+|++.+|.+|  +
T Consensus       192 ~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~  267 (294)
T PRK12873        192 MADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALAAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQSI  267 (294)
T ss_pred             HHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccH
Confidence            9999999999999999999975 555667777777776777776655443   455666677788999999999887  4


Q ss_pred             HHHHHHHH
Q 044153          251 AAILSFYR  258 (262)
Q Consensus       251 ~~~~~f~~  258 (262)
                      ++|.++|+
T Consensus       268 ~~c~~~F~  275 (294)
T PRK12873        268 KTIGNHFS  275 (294)
T ss_pred             HHHHHHHH
Confidence            88877765

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.97  E-value=2e-29  Score=224.17  Aligned_cols=217  Identities=14%  Similarity=0.168  Sum_probs=149.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHH
Q 044153           28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIM-LRSPPLISTIIMWF  104 (262)
Q Consensus        28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~~  104 (262)
                      .++.++++++.++++|++|||+|+|+|++|+  |+||+|+|++|++|+..++..+..+++.++.. .|+.+.....+...
T Consensus        38 ~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~  117 (279)
T PRK12869         38 LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWF  117 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667888999999999999999999999966  89999999999999999999999999888877 77665433333455


Q ss_pred             HHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh--HHHHHHHHHHHHHh--hhcCCChhhh
Q 044153          105 VLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT--YRVFKNIDVCSGCQ--VLDMPDVDGD  179 (262)
Q Consensus       105 ~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~--~~~~~D~e~D  179 (262)
                      +..+.||.     ++||+++.+.+..+...+.++..|+..     ..++ +.  .......+++....  .++++|+|+|
T Consensus       118 ~~~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~~a-----~~g~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd  187 (279)
T PRK12869        118 FYAVVYTI-----WLKPRTWLNIVIGGFAGNAAALAGYAS-----GTGSLDLEAVLLSFLIYLWTPGHIWSLALKYREDY  187 (279)
T ss_pred             HHHhhhCc-----ccccCChHHHHHHHHHHHHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence            67889995     689999876666655554444444432     2233 22  22223334444333  4577999999


Q ss_pred             HHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH-HHHHHHHHhhcccCCChHHHHHHHH
Q 044153          180 KEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHST-LAFLLLQRARNVDVSSQAAILSFYR  258 (262)
Q Consensus       180 ~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~d~~~~~~~~~f~~  258 (262)
                      +++|+||+|+++|+|++.+....+..+.......... ...++   +|.++..+ ....+.++.+..+.+|++.|++.|+
T Consensus       188 ~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~~g~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~  263 (279)
T PRK12869        188 RRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YYIGL---IGLILVAILSAALMATSIRALLNPTKEEAWKMFK  263 (279)
T ss_pred             HHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hhccH---HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Confidence            9999999999999999988776666555544444333 22232   34333332 3334555555566566666766555

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=3.1e-29  Score=224.68  Aligned_cols=240  Identities=14%  Similarity=0.094  Sum_probs=159.8

Q ss_pred             hhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC-----CCCcccCCccCHHHHHHHHHHHHHHH
Q 044153           10 SLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK-----PDLPLASGDLSIGAGITITCTCLLMS   84 (262)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~-----~~RPl~sG~ls~~~a~~~~~~~~~l~   84 (262)
                      +++|.....++++   ..+++++++.+++++++|.+|||+|+|.|+.|+     |+||+++|++|++|++....++..++
T Consensus        27 ~a~a~~~~~~f~~---~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia  103 (296)
T PRK05951         27 IAYGYYLFRSFDP---LLGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIA  103 (296)
T ss_pred             HHHHHHhcCCcCH---HHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHH
Confidence            3444333345664   445788899999999999999999966555544     78999999999999998877766665


Q ss_pred             HHHH----HHhhhHHHHHHHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcchhHH-HH
Q 044153           85 LAIG----IMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAWKTYR-VF  159 (262)
Q Consensus        85 l~l~----~~~~~~~~~~~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~  159 (262)
                      +.++    ...+.+.+.++ +.+.+.++.||  .||+++|++++ |++.++..+|..+..|.+.. +....+..... -.
T Consensus       104 ~~~g~~l~~~~~~~~l~l~-~~~~~~~~~Yt--~~P~~lky~gl-Ge~~v~~~~g~~~vlg~~~~-~~~~~~~~~~~~sl  178 (296)
T PRK05951        104 LQLGWSLVLDRGIGAVTLA-LLGVFLWTCYM--GPPFFLKYRWL-GEHLVFYAWSHMLVMGLIYV-WLGNLSSPNLLAGV  178 (296)
T ss_pred             HHHHHHHHHhccHHHHHHH-HHHHHHHHHHc--CCCcccCCCCc-hHHHHHHHHHHHHHHHHHHH-HhCcccHHHHHHHH
Confidence            4332    22344444554 46888999999  59999998876 68877777775444443321 11111101111 11


Q ss_pred             HHHHHHHHH-hhhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 044153          160 KNIDVCSGC-QVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLL  238 (262)
Q Consensus       160 ~~~~~~~~~-~~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  238 (262)
                      ...+..... ..||+||+|+|++.|+||+|+++|+|++ ++...+...+|+..+.....+..++..+++++++-.....+
T Consensus       179 ~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~  257 (296)
T PRK05951        179 PLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALC  257 (296)
T ss_pred             HHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            122222333 3999999999999999999999999999 66666777777766665555544554445555544444555


Q ss_pred             HHHhhcccCCChHHHHHHHH
Q 044153          239 LQRARNVDVSSQAAILSFYR  258 (262)
Q Consensus       239 ~~~~~~~d~~~~~~~~~f~~  258 (262)
                      .++.++.|.++.+.|..++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~  277 (296)
T PRK05951        258 LWQLRKFPPDPDEATVQLFM  277 (296)
T ss_pred             HHHHhhCcccccHHHHHHHH
Confidence            55666666666666666654

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.97  E-value=1.6e-29  Score=232.02  Aligned_cols=173  Identities=24%  Similarity=0.288  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHH
Q 044153           28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIML-------RSPPLISTI  100 (262)
Q Consensus        28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~-------~~~~~~~~~  100 (262)
                      .+++++++.+.++++|++|||+|+|+|++|+|+||+++|++++++++.....+..+++.+++.+       +++.+.++ 
T Consensus       125 ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~-  203 (375)
T PLN00012        125 IVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLA-  203 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH-
Confidence            4677888999999999999999999999999999999999999999987766666665555443       23334444 


Q ss_pred             HHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhHH--HHHHHHHHHHH--hhhcCCC
Q 044153          101 IMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTYR--VFKNIDVCSGC--QVLDMPD  175 (262)
Q Consensus       101 ~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~--~~~~~~~~~~~--~~~~~~D  175 (262)
                      +.+++++++||  .||+++||+++.+++..+..++..   +++. ++ ...+. +...  .....+++...  ..||+||
T Consensus       204 l~gi~l~~~YS--~pPl~lKr~~~~G~v~lG~~~~~l---p~~~-g~-a~~g~~s~~~illal~~~l~~lai~ivnd~~D  276 (375)
T PLN00012        204 LGGSLLSYIYS--APPLKLKQNGWIGNYALGASYISL---PWWA-GQ-ALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKS  276 (375)
T ss_pred             HHHHHHhhhhc--CCchhhhHhccHhHHHHHHHHHHH---HHHH-HH-HHcCCCCHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            35777899999  599999999998887765555422   2111 11 23343 2222  22223334433  3999999


Q ss_pred             hhhhHHcCCcccceeechHHHHHHHHHHHHHHH
Q 044153          176 VDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVY  208 (262)
Q Consensus       176 ~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~  208 (262)
                      +|+|++.|+||+||++|++++++++..++.+..
T Consensus       277 ie~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~  309 (375)
T PLN00012        277 IEGDRALGLQSLPVAFGVETAKWICVGSIDITQ  309 (375)
T ss_pred             hhhHHHcCCcccceeechHHHHHHHHHHHHHHH
Confidence            999999999999999999999988765444443

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.97  E-value=5.3e-29  Score=221.30  Aligned_cols=167  Identities=24%  Similarity=0.345  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 044153           28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLS  107 (262)
Q Consensus        28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~  107 (262)
                      .++++++.++.++++|++|||+|+|+|++|+|+||+++|++++++++.+..++.++|+.+++..|++++.+.. .+.+.+
T Consensus        39 ~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~-~~~~~~  117 (277)
T PRK12883         39 LILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFAL-GAYVLM  117 (277)
T ss_pred             HHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            4556778888899999999999999999999999999999999999999999999999888888887776664 566789


Q ss_pred             hhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh-HHHHHHHHHHHHH--hhhcCCChhhhHHcC
Q 044153          108 SAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT-YRVFKNIDVCSGC--QVLDMPDVDGDKEHG  183 (262)
Q Consensus       108 ~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~-~~~~~~~~~~~~~--~~~~~~D~e~D~~~G  183 (262)
                      +.||.     ++||.+..+++..+...|..+..|+..     . +. +. .......+++.+.  ..||+||+|+|+++|
T Consensus       118 ~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a-----~-~~~~~~~~~~~~~fl~~~~~~~~~~~~D~e~D~~~G  186 (277)
T PRK12883        118 FLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIA-----V-GRIGLAGYLAICAFLVNVAREIMKDIEDIEGDKAKG  186 (277)
T ss_pred             HHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHH-----h-ccccHHHHHHHHHHHHHHHHHHHhhhhhhccHHHcC
Confidence            99996     789988888888777776433334321     1 22 11 1112223334333  389999999999999


Q ss_pred             CcccceeechHHHHHHHHHHHHH
Q 044153          184 IQTLSIALGKEKVLWLGVYMLLV  206 (262)
Q Consensus       184 ~~Tlpv~~G~~~~~~~~~~l~~~  206 (262)
                      +||+|+++|+|++++....+...
T Consensus       187 ~~Tlpv~~G~~~a~~~~~~~~~~  209 (277)
T PRK12883        187 AKTLPIIIGKKRAAYIGAIFGVL  209 (277)
T ss_pred             CcCcChHhcHHHHHHHHHHHHHH
Confidence            99999999999998876655433

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.97  E-value=6.5e-29  Score=219.63  Aligned_cols=175  Identities=21%  Similarity=0.228  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHHH
Q 044153           29 LKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLM----SLAIGIMLRSPPLISTIIMWF  104 (262)
Q Consensus        29 ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l----~l~l~~~~~~~~~~~~~~~~~  104 (262)
                      ++++...+..+...|++|||+|+|+|++|+|+||+++|++|++|++.+...+...    ++.+++..|+.++.+.. ++.
T Consensus        50 ~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~-v~~  128 (292)
T PRK13595         50 PLLLYLTLPFNLLIYGLNDLADRETDAASPRKGGWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLL-LYA  128 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHH
Confidence            4555556677889999999999999999999999999999999998864444333    55666677776666654 677


Q ss_pred             HHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcch-hHHHHH--HHHHHHHHhhhcCCChhhhHH
Q 044153          105 VLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAWK-TYRVFK--NIDVCSGCQVLDMPDVDGDKE  181 (262)
Q Consensus       105 ~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~D~e~D~~  181 (262)
                      ++++.||  .||+|+|++|+.++++.. ..+.+  .++.    ..+.|.+ .+..+.  +.+...+..+++++|+|+||+
T Consensus       129 ~l~~~YS--~pPlRlK~rp~l~~l~~~-~~g~p--~~~~----~~~~g~~~~~~~l~a~~~w~~g~dii~ai~DiegDr~  199 (292)
T PRK13595        129 ALFVGYS--LPPLRFKARPFLDGLSNA-AYALP--LALP----ALALGAPVPWPPLLALMAWSVGKHAFDAAQDIPADRA  199 (292)
T ss_pred             HHHHHHc--cCccchhcCcchhHHHHH-HHHHH--HHHH----HHHcCCcchHHHHHHHHHHHHHHHHHHhccChHhHHH
Confidence            9999999  699999999999888763 33332  2221    1233432 222222  223334445999999999999


Q ss_pred             cCCcccceeechHHHHHHHHHHHHHHHHHHHH
Q 044153          182 HGIQTLSIALGKEKVLWLGVYMLLVVYGALVI  213 (262)
Q Consensus       182 ~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~  213 (262)
                      .|+||+|+++|+|++.+++..+.+++...+..
T Consensus       200 ~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~  231 (292)
T PRK13595        200 AGTRTVATTLGVRGTALYALAWFLLAGALLWP  231 (292)
T ss_pred             cCCeechHHhCcHhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988887766554443

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.97  E-value=1.3e-28  Score=220.64  Aligned_cols=221  Identities=15%  Similarity=0.099  Sum_probs=148.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHH
Q 044153           27 GLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIM-LRSPPLISTIIMW  103 (262)
Q Consensus        27 ~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~  103 (262)
                      ..++++++.++.++++|++|||+|+|+|++|+  |+||+|+|++|++|++.++.++.++++.+++. .|+.+..+..+..
T Consensus        45 ~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~  124 (296)
T PRK04375         45 LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGI  124 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            35678889999999999999999999999966  89999999999999999999999999887755 4655555543222


Q ss_pred             HHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh--HHHHHHHHHHHH--HhhhcCCChhh
Q 044153          104 FVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT--YRVFKNIDVCSG--CQVLDMPDVDG  178 (262)
Q Consensus       104 ~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~--~~~~~~~~~~~~--~~~~~~~D~e~  178 (262)
                      ......||.     ++||+++......+...+.++.+|+..     +.+. +.  ...+...++|..  ...++++|+|+
T Consensus       125 ~~~~~~Ys~-----~lKr~~~~~~~v~~~~g~~~~l~g~~a-----~~g~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D  194 (296)
T PRK04375        125 FFYVVVYTL-----WLKRRTPQNIVIGGAAGAMPPLIGWAA-----VTGSLSWEALILFLIIFLWTPPHFWALAIFRKDD  194 (296)
T ss_pred             HHHHHHhcc-----chhcCCccchHHHHHHHHhHHHHHHHH-----hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            335678995     699999754455444444444455532     2233 22  222223344432  33677999999


Q ss_pred             hHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHH
Q 044153          179 DKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYR  258 (262)
Q Consensus       179 D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~  258 (262)
                      |+++|+||+|+++|++++++.......+.....++.......++  .++..+.......+.++.+..+.+|++.|++.|+
T Consensus       195 ~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~  272 (296)
T PRK04375        195 YAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMAGL--LYLVVALLLGAWFLYYAWRLYRKDDRKWARKLFR  272 (296)
T ss_pred             HHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHH
Confidence            99999999999999999887666555444433333322222222  1222233344555666666667677777766665


Q ss_pred             h
Q 044153          259 F  259 (262)
Q Consensus       259 ~  259 (262)
                      +
T Consensus       273 ~  273 (296)
T PRK04375        273 Y  273 (296)
T ss_pred             H
Confidence            3

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.97  E-value=1.7e-28  Score=218.33  Aligned_cols=220  Identities=15%  Similarity=0.114  Sum_probs=149.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHH
Q 044153           26 IGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIG-IMLRSPPLISTIIM  102 (262)
Q Consensus        26 ~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~-~~~~~~~~~~~~~~  102 (262)
                      ..+++++++.++.++++|++|||+|+|.|++|+  |+||+++|++|++|++.++.++.++|+.+. ...|+....++. .
T Consensus        35 ~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~-~  113 (280)
T TIGR01473        35 PLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLGVAILAAFVNPLAALLGL-F  113 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-H
Confidence            345678889999999999999999999999855  899999999999999999999999988844 446766666554 4


Q ss_pred             HHH-HHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh-H-HHHHHHHHHHHH--hhhcCCCh
Q 044153          103 WFV-LSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT-Y-RVFKNIDVCSGC--QVLDMPDV  176 (262)
Q Consensus       103 ~~~-~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~-~-~~~~~~~~~~~~--~~~~~~D~  176 (262)
                      +.+ ..+.||.     .+||+++.+.+..+...+.++..|+..     ..++ +. . ......++|...  ...+++|+
T Consensus       114 ~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~~a-----~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~~~  183 (280)
T TIGR01473       114 GIFFYVIVYTI-----WLKRRTPQNTVIGGFAGAVPPLIGWAA-----VTGSISLGAWLLFAIIFLWQPPHFWALALKYK  183 (280)
T ss_pred             HHHHHHhhcCh-----hhccCCchhHHHHHHHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            444 4889994     589999886666665544444445432     2233 22 2 222233334322  25568999


Q ss_pred             hhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCC-ChHHHHH
Q 044153          177 DGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVS-SQAAILS  255 (262)
Q Consensus       177 e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~-~~~~~~~  255 (262)
                      |+|+++|+||+|+++|+|++.+..............+.......++  .++..+.......+.++.+..|.+ |++.|++
T Consensus       184 ~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  261 (280)
T TIGR01473       184 DDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTGW--LYLIVATLLGALFLYLAFKFYRDPTDRKKARK  261 (280)
T ss_pred             hhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            9999999999999999999887666555444443444333332232  222244444555666666666665 5666666


Q ss_pred             HHH
Q 044153          256 FYR  258 (262)
Q Consensus       256 f~~  258 (262)
                      .|+
T Consensus       262 ~f~  264 (280)
T TIGR01473       262 LFK  264 (280)
T ss_pred             HHH
Confidence            665

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.96  E-value=1.8e-27  Score=214.75  Aligned_cols=204  Identities=15%  Similarity=0.120  Sum_probs=146.5

Q ss_pred             hhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC----CCCcccCCccCHHHHHHHHHHHHHHH
Q 044153            9 VSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK----PDLPLASGDLSIGAGITITCTCLLMS   84 (262)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~----~~RPl~sG~ls~~~a~~~~~~~~~l~   84 (262)
                      ++++|......+++.   .+++++++.++.|.++|.+|||+|++.|+.++    |+|++++|.+|+++++..+..+..++
T Consensus        25 G~a~a~~~~~~~~~~---~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~~~v~~~~~~~~~ia  101 (317)
T PRK13387         25 GTLFSLYVAKIFDWL---LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVA  101 (317)
T ss_pred             HHHHHHHhCCCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCHHHHHHHHHHHHHHH
Confidence            334444333456643   45778888899999999999999998766654    78999999999999998877776666


Q ss_pred             HH----HHHHhhhHHHHHHHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhh-HHHHHHHHHhhcchhH---
Q 044153           85 LA----IGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPL-GYFMHIQAQVRAWKTY---  156 (262)
Q Consensus        85 l~----l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~---  156 (262)
                      .+    +.+..|++.+.++ +.+.+.++.||  .||+++||+| +|++.++..+|..+.. ++|.+  +...+ ...   
T Consensus       102 ~~~Gl~L~~~~g~~~l~ig-l~g~~~~~~Yt--~gP~~l~y~g-LGe~~v~i~~G~~~v~g~~yv~--t~~~~-~~~~~~  174 (317)
T PRK13387        102 AILGVYLCMNTSWLLLVIG-LICFAIGILYT--GGPLPLSRMP-LGEIFSGLTMGFGIFLLAVYIN--TNTIT-IESLLF  174 (317)
T ss_pred             HHHHHHHHHHhcHHHHHHH-HHHHHHhhhhc--CCCcccccCc-cHHHHHHHHHHHHHHHHHHHHh--cCCCc-hHHHHh
Confidence            55    5555565555555 46888999999  5999999999 5788887777755433 33332  11100 000   


Q ss_pred             -------------------HHHHHHHHHHHHh-hhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHh
Q 044153          157 -------------------RVFKNIDVCSGCQ-VLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGA  216 (262)
Q Consensus       157 -------------------~~~~~~~~~~~~~-~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~  216 (262)
                                         ..++..+...-.+ .||+||+|+|+++|+||+|+++|+|++.+++..+...+|+..+....
T Consensus       175 ~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~  254 (317)
T PRK13387        175 QGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVL  254 (317)
T ss_pred             cccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHH
Confidence                               0111222222223 99999999999999999999999999999999999999987776655


Q ss_pred             hcchhH
Q 044153          217 SSPFLE  222 (262)
Q Consensus       217 ~~~~~~  222 (262)
                      .+..|+
T Consensus       255 ~g~lp~  260 (317)
T PRK13387        255 MGYISP  260 (317)
T ss_pred             HHHhHH
Confidence            554454

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.96  E-value=1.9e-27  Score=212.90  Aligned_cols=189  Identities=16%  Similarity=0.143  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhch--hhhhc--CCCCCcccCCccCHHHHHHHHHHHHHHHHHHH----HHhhhHHHH
Q 044153           26 IGLLKAIVPGLLVNIYEVGVNQLYDV--EIDKI--NKPDLPLASGDLSIGAGITITCTCLLMSLAIG----IMLRSPPLI   97 (262)
Q Consensus        26 ~~~ll~~l~~~l~~~a~~~iNd~~D~--~~D~~--n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~----~~~~~~~~~   97 (262)
                      ..+++++++.++.++++|.+|||+|+  |.|++  ++|+||+++|++|++|++..+..+..+++.++    ...+.+.+.
T Consensus        38 ~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~  117 (293)
T PRK06080         38 LLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLL  117 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            34577888999999999999999999  46754  67999999999999999987777666554443    333554445


Q ss_pred             HHHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhHHHH--HHHHHHH--HHhhhc
Q 044153           98 STIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTYRVF--KNIDVCS--GCQVLD  172 (262)
Q Consensus        98 ~~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~--~~~~~~~--~~~~~~  172 (262)
                      .+ +.+.+.++.||  .||.++|++++ +++..+..+|.....+.+..    ..+. +...++  ...+++.  ....||
T Consensus       118 ~~-~~~~~~~~~Ys--~~p~~~~~~gl-ge~~~~~~~G~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~n~  189 (293)
T PRK06080        118 LG-LLCIAAAILYT--GGPKPYGYTGL-GELFVGVFFGLVIVLGTYYL----QAGTVDSAVFLPALPCGLLIGAVLLANN  189 (293)
T ss_pred             HH-HHHHHHhhhhc--CCCCccCCCCc-HHHHHHHHHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            44 35778899999  59999999886 67777777775444332221    1122 211221  1122222  334999


Q ss_pred             CCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 044153          173 MPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLE  222 (262)
Q Consensus       173 ~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~  222 (262)
                      +||+|+|+++|+||+|+++|+|++++++..+..++++..+........++
T Consensus       190 ~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~  239 (293)
T PRK06080        190 IRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASP  239 (293)
T ss_pred             CCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            99999999999999999999999999999999999988777666554454

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.96  E-value=6.6e-27  Score=210.10  Aligned_cols=169  Identities=19%  Similarity=0.237  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Q 044153           28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGI-MLRSPPLISTIIMWF  104 (262)
Q Consensus        28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~-~~~~~~~~~~~~~~~  104 (262)
                      .++++++..+.++++|++|||+|+|+|++++  ++||+|||++|++|++.++.++..+|+.+.. ..|+.......+...
T Consensus        49 ~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~  128 (306)
T PRK13362         49 MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYV  128 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4567789999999999999999999998743  7999999999999999999999989887654 456655544433333


Q ss_pred             HHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh--HHHHHHHHHHHHHh--hhcCCChhhh
Q 044153          105 VLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT--YRVFKNIDVCSGCQ--VLDMPDVDGD  179 (262)
Q Consensus       105 ~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~--~~~~~D~e~D  179 (262)
                      ...+.||.     ++||+++.+++..+...+.++.+|+..     +.|+ +.  ...+...++|....  ..+++|+|||
T Consensus       129 ~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~G~~a-----~~g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy  198 (306)
T PRK13362        129 VYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPVVGYCA-----VTGQFDAGALILLLMFSLWQMPHSYAIAIFRFNDY  198 (306)
T ss_pred             HHHHHHhH-----HHhccCcHhHHHHHHHHHHHHHHHHHH-----HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Confidence            46789995     699999999998887777666666643     2333 22  22233334444333  5778899999


Q ss_pred             HHcCCcccceeechHHHHHHHHHHHHH
Q 044153          180 KEHGIQTLSIALGKEKVLWLGVYMLLV  206 (262)
Q Consensus       180 ~~~G~~Tlpv~~G~~~~~~~~~~l~~~  206 (262)
                      +++|+||+|+++|+|++++.......+
T Consensus       199 ~~aG~~~lpv~~G~~~t~~~~~~~~~~  225 (306)
T PRK13362        199 AAAGIPVLPVARGIAKTKLHIVLYILV  225 (306)
T ss_pred             HHCCCeeeceecChHHHHHHHHHHHHH
Confidence            999999999999999888754444333

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.95  E-value=2.6e-27  Score=206.93  Aligned_cols=162  Identities=28%  Similarity=0.413  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhchhhhhc--CCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 044153           28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKI--NKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFV  105 (262)
Q Consensus        28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~--n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~  105 (262)
                      .....+..++.+.++|.+||+.|+|+|++  |||+||+++|+++++++...+.++.++++.+++..+++.+.+.. .+.+
T Consensus        25 ~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~~~~~~~~~~~~-~~~~  103 (257)
T PF01040_consen   25 FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLALLLGPWFLLILL-LGFL  103 (257)
T ss_pred             HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH-HHHH
Confidence            34555666689999999999999999999  89999999999999999999999999999888877877666654 5667


Q ss_pred             HHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhHHHH--HHHHHHHHHh--hhcCCChhhhH
Q 044153          106 LSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTYRVF--KNIDVCSGCQ--VLDMPDVDGDK  180 (262)
Q Consensus       106 ~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~--~~~~~D~e~D~  180 (262)
                      .++.||   ||+|+||+++.++++.+..++..+..+++.     ..+. +.....  ...++..+..  .+|++|+|+|+
T Consensus       104 ~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~  175 (257)
T PF01040_consen  104 LGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA-----AGGDPPPPPFLLAIFFFLLIFAIMFFNDIRDIEGDR  175 (257)
T ss_pred             HHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh-----cCCcccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            779999   888999999999999888877555555432     1122 122221  1112333332  77999999999


Q ss_pred             HcCCcccceeechHHHHH
Q 044153          181 EHGIQTLSIALGKEKVLW  198 (262)
Q Consensus       181 ~~G~~Tlpv~~G~~~~~~  198 (262)
                      +.|+||+|+++|+++++.
T Consensus       176 ~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  176 KAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HcCCcchHHHHHHHHHHH
Confidence            999999999999999987

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.95  E-value=1.5e-26  Score=205.54  Aligned_cols=179  Identities=21%  Similarity=0.100  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcc
Q 044153           32 IVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYS  111 (262)
Q Consensus        32 ~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys  111 (262)
                      ++.+.+...++|++|||+|+|+|++|+|+||.+    +++.+..++.+..++|+.+++..|++.  ++ +.+.+.+++||
T Consensus        64 ~~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l~-ll~~l~g~lYS  136 (307)
T PRK13591         64 CIAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--LA-FLPFITGYLYS  136 (307)
T ss_pred             HHHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--HH-HHHHHHHHHhc
Confidence            445567788999999999999999999999986    888999999999999999998877532  33 35777899999


Q ss_pred             CC----CCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc--hhHHHHHHHHHHHHH--hhhcCCChhhhHHcC
Q 044153          112 VD----LPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW--KTYRVFKNIDVCSGC--QVLDMPDVDGDKEHG  183 (262)
Q Consensus       112 ~~----~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~D~e~D~~~G  183 (262)
                      .|    ..|+|+|+.+..|++.++..+|..+..+.   + . ..+.  +....+.......+.  .+||++|+|||++.|
T Consensus       137 ~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~---g-~-~~~~~~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G  211 (307)
T PRK13591        137 KGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA---G-S-YCGSLIPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAG  211 (307)
T ss_pred             CCCCCCCccccccCCCchhHHHHHHHHHHHHHHHH---H-h-hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcC
Confidence            74    22458999999999999999885322110   0 0 1111  111111111112233  399999999999999


Q ss_pred             CcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 044153          184 IQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLE  222 (262)
Q Consensus       184 ~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~  222 (262)
                      +||+|+++|+++++++...+...+++..+.....+..++
T Consensus       212 ~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~  250 (307)
T PRK13591        212 IKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAF  250 (307)
T ss_pred             CeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999998888887776655544443

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.95  E-value=7.5e-26  Score=201.29  Aligned_cols=205  Identities=15%  Similarity=0.074  Sum_probs=142.7

Q ss_pred             hhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh--hhhcC--CCCCcccCCccCHHHHHHHHHHHHHHH
Q 044153            9 VSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVE--IDKIN--KPDLPLASGDLSIGAGITITCTCLLMS   84 (262)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~--~D~~n--~~~RPl~sG~ls~~~a~~~~~~~~~l~   84 (262)
                      ++++|... ..|+   +..+++++++.+++|.++|.+|||+|++  .|+.+  +|+|++++|.+++++++..+..+..++
T Consensus        15 G~ala~~~-~~f~---~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a   90 (284)
T TIGR00751        15 GTALAAWL-HAFV---WLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALG   90 (284)
T ss_pred             HHHHHHHc-CCcc---HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHH
Confidence            44444433 2555   4455788899999999999999999986  36542  488999999999999998777766654


Q ss_pred             HH----HHHHhhh-----HHHHHHHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcchh
Q 044153           85 LA----IGIMLRS-----PPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAWKT  155 (262)
Q Consensus        85 l~----l~~~~~~-----~~~~~~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~  155 (262)
                      ..    +.+..++     +.+....+.+.+.++.||  .||+++|++++ |++.++..+|..+..|.+.. ++...+ ..
T Consensus        91 ~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt--~gP~~l~y~gL-GE~~v~i~~G~l~v~g~~yv-q~~~~~-~~  165 (284)
T TIGR00751        91 ALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYT--VGSKPYGYAGL-GDISVLVFFGPLAVLGTQYL-QAHRVD-WV  165 (284)
T ss_pred             HHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhc--CCCCccccCch-HHHHHHHHHHHHHHHHHHHH-hcCCCC-HH
Confidence            43    4443343     133333346778899999  59999999996 78888888886544443321 111111 11


Q ss_pred             HH--HHHHHHHHHHHh-hhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 044153          156 YR--VFKNIDVCSGCQ-VLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLE  222 (262)
Q Consensus       156 ~~--~~~~~~~~~~~~-~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~  222 (262)
                      ..  ..+..+.....+ .||+||+|+|+++|+||+||++|+|+++++...++..+|+..++.......++
T Consensus       166 ~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~  235 (284)
T TIGR00751       166 GILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISW  235 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence            11  112223333333 99999999999999999999999999999999998888877766554444444

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=1.3e-26  Score=206.63  Aligned_cols=190  Identities=24%  Similarity=0.219  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Q 044153           28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIM-LRSPPLISTIIMWFVL  106 (262)
Q Consensus        28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~~~~  106 (262)
                      ....+++.++.+.++|++|||+|+|+|++|+|+||.++++...+....+..+...+++.+... .|++.+... +.+.+.
T Consensus        38 ~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~-~~~~~~  116 (285)
T PRK12872         38 SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIF-IIPLIL  116 (285)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHH
Confidence            345677888999999999999999999999999998854433333333444444444444332 355555554 457778


Q ss_pred             HhhccCCCCcc-cccccchhhhHHHHHHhhhhhhh-HHHHHHHHHhhcchhHHHHHHHHHHHHH--hhhcCCChhhhHHc
Q 044153          107 SSAYSVDLPFL-RWKRNPFLATMYGVLERGLAMPL-GYFMHIQAQVRAWKTYRVFKNIDVCSGC--QVLDMPDVDGDKEH  182 (262)
Q Consensus       107 ~~~Ys~~~pp~-rlKr~~~~~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~e~D~~~  182 (262)
                      ++.||.  ||. ++||.|..++++.+..+|..+.. +++.. + ...+..........+...+.  ..+|+||+|+|+++
T Consensus       117 ~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~-~-~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~  192 (285)
T PRK12872        117 GILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILGVYYY-Q-LTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKS  192 (285)
T ss_pred             HHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhc-c-cccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHc
Confidence            999994  554 68999999999999888854433 32221 0 00010111111222333333  39999999999999


Q ss_pred             CCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 044153          183 GIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLE  222 (262)
Q Consensus       183 G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~  222 (262)
                      |+||+|+++|+|+++++...+..+.++.++.....+..++
T Consensus       193 G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (285)
T PRK12872        193 GLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPL  232 (285)
T ss_pred             CCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Confidence            9999999999999999999988888887776555443444

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=1.5e-25  Score=200.62  Aligned_cols=212  Identities=15%  Similarity=0.160  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhchhhhhcC---------C--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhH---
Q 044153           29 LKAIVPGLLVNIYEVGVNQLYDVEIDKIN---------K--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSP---   94 (262)
Q Consensus        29 ll~~l~~~l~~~a~~~iNd~~D~~~D~~n---------~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~---   94 (262)
                      ++.++++.++.+++|++|||+|+|.|++|         |  ++||+++|++|++|++.+..++.++|+.++..++.+   
T Consensus        44 ~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~  123 (297)
T PRK12871         44 IKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSL  123 (297)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33345555556778999999999999864         2  589999999999999999999988888877665432   


Q ss_pred             -HHHHHHHHHHHHHhhccCCCCcccccccc---hhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhHHH--HHHHHHHHH
Q 044153           95 -PLISTIIMWFVLSSAYSVDLPFLRWKRNP---FLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTYRV--FKNIDVCSG  167 (262)
Q Consensus        95 -~~~~~~~~~~~~~~~Ys~~~pp~rlKr~~---~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~--~~~~~~~~~  167 (262)
                       .+.++ +.+.++++.|+.       ||++   +.+.+..+...+.++..+ +.     ..+. +...+  ....+++..
T Consensus       124 ~~~~l~-~~~~~~~~~Y~~-------~kr~~~~p~~~l~G~~~~~~~~~~g-~~-----~~g~~~~~~~ll~~~~~~w~~  189 (297)
T PRK12871        124 YVFVIM-LYSYGIEAFYQV-------KKRNQKYPVAQLLGRTDFTLFPAAG-YL-----CYGQPDMTALLYMVFFYPWTM  189 (297)
T ss_pred             HHHHHH-HHHHHHHHHHhc-------ccccccccHHHHHHHHHHHHHHHHH-HH-----HhCCCcHHHHHHHHHHHHHHH
Confidence             22222 345567788884       4431   122333322233222223 22     2233 22222  222344443


Q ss_pred             H--hhhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 044153          168 C--QVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNV  245 (262)
Q Consensus       168 ~--~~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  245 (262)
                      .  +.||++|+|+|++.|+||+|+++|++++++....+..+.+...+  +.....++  ..+..........+.++.+..
T Consensus       190 ~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~--~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~  265 (297)
T PRK12871        190 AHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI--FFLRELGP--IALYGFLAGFVLLAGANLYLW  265 (297)
T ss_pred             HHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH--HHHHHhhH--HHHHHHHHHHHHHHHHHHHHh
Confidence            3  39999999999999999999999999888665555544443332  22222222  223333355566788888888


Q ss_pred             cCCChHHHHHHHH
Q 044153          246 DVSSQAAILSFYR  258 (262)
Q Consensus       246 d~~~~~~~~~f~~  258 (262)
                      +.+|++.|.+-|+
T Consensus       266 ~~~~~~~~~~~f~  278 (297)
T PRK12871        266 KEKSQDAGMKILP  278 (297)
T ss_pred             cCCCHHHHHHHHH
Confidence            9999999877664

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.94  E-value=6.9e-25  Score=196.55  Aligned_cols=204  Identities=14%  Similarity=0.080  Sum_probs=139.5

Q ss_pred             hhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh--hhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHH-
Q 044153           10 SLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVE--IDKINKPDLPLASGDLSIGAGITITCTCLLMSLA-   86 (262)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~--~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~-   86 (262)
                      +++|.....++++   ..+++++++.++.|.++|.+|||+|++  .|+. +++ ...++..++++.+..+..+..+++. 
T Consensus        35 ~a~a~~~~~~f~~---~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~-~~~~~~~~~~~v~~~~~~~~~~a~~~  109 (304)
T PRK07419         35 TAWALGETGVFRL---DQFITFLLAAILILAWENLSNDVFDADTGIDKN-KFH-SVVNLTGNKSLVFWLANLFLLLGLLG  109 (304)
T ss_pred             HHHHHHcCCCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-CcccccCcHHHHHHHHHHHHHHHHHH
Confidence            3344333235664   445788899999999999999999998  6763 222 2334555788888776666555443 


Q ss_pred             ---HHHHhhhHHHHHHHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhh-HHHHHHHHHhhcchh-HHHHHH
Q 044153           87 ---IGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPL-GYFMHIQAQVRAWKT-YRVFKN  161 (262)
Q Consensus        87 ---l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~-~~~~~~  161 (262)
                         +.+..|++.+.++ +.+.+.+++||  .||+++|++++ |++.++..+|..+.. ++|..  +..+.... ...+..
T Consensus       110 Gl~L~~~~g~~~l~ig-~~g~~~~~~YT--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~yv~--t~~~~~~~~~~sl~~  183 (304)
T PRK07419        110 ILAIALQSDWTVLGLV-LLCCFLGYLYQ--GPPFRLGYQGL-GEPLCFLAFGPLAVAAALYSQ--TPSWSLIPLAASIIL  183 (304)
T ss_pred             HHHHHHhhcHHHHHHH-HHHHHHhhecc--CCCcccCCCCc-hHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHH
Confidence               4444455444444 46888999999  69999999996 788888888865444 33331  11111111 111222


Q ss_pred             HHHHHHHh-hhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 044153          162 IDVCSGCQ-VLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESK  224 (262)
Q Consensus       162 ~~~~~~~~-~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~  224 (262)
                      .+...-.+ .||+||+|+|+++|+||+||++|+|++++++..+...+|+..+........|+..
T Consensus       184 gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~~p~~~  247 (304)
T PRK07419        184 GLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPWTT  247 (304)
T ss_pred             HHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            23233333 9999999999999999999999999999999999999998887766655556543

>PLN02922 prenyltransferase

Probab=99.94  E-value=1.7e-24  Score=194.99  Aligned_cols=203  Identities=16%  Similarity=0.114  Sum_probs=137.4

Q ss_pred             hhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh--hhhcCCC--CCcccCCccCHHHHHHHHHHHHHHH
Q 044153            9 VSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVE--IDKINKP--DLPLASGDLSIGAGITITCTCLLMS   84 (262)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~--~D~~n~~--~RPl~sG~ls~~~a~~~~~~~~~l~   84 (262)
                      ++++|......+++.   .++++++++++.|.++|.+|||+|++  .|+.++.  .|+  .|  |+++.+.....+.+++
T Consensus        37 G~a~A~~~~g~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~--~~--s~~~v~~~~~~~~~la  109 (315)
T PLN02922         37 GAAAAYLQTGLFDAR---RYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVNL--VG--SRRGVLAAAIGCLALG  109 (315)
T ss_pred             HHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCCc--cc--CHHHHHHHHHHHHHHH
Confidence            444554443456644   45788999999999999999999987  5664332  233  34  8999887766666555


Q ss_pred             HHHHHHh----hhHHHHHHHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhc-------c
Q 044153           85 LAIGIML----RSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRA-------W  153 (262)
Q Consensus        85 l~l~~~~----~~~~~~~~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~-------~  153 (262)
                      +...+..    +.|.++...+.+++.+++||  .||+++|++++ |++.++..+|..+..+.+.. ++...+       .
T Consensus       110 ~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt--~gP~pl~y~gL-GE~~v~i~fG~l~v~g~y~~-~~~~~~~~~~~~~~  185 (315)
T PLN02922        110 AAGLVWASLVAGNIRVILLLAAAILCGYVYQ--CPPFRLSYKGL-GEPLCFAAFGPLATTAFYLA-LASGAGGSEMAILP  185 (315)
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHHh--cCCcccccCcc-hHHHHHHHHHHHHHHHHHHH-hccccccccccccc
Confidence            4322211    22434433357889999999  69999999997 68877888876544444332 111110       0


Q ss_pred             -hhHHH---HHHHHHHHHHh-hhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 044153          154 -KTYRV---FKNIDVCSGCQ-VLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLE  222 (262)
Q Consensus       154 -~~~~~---~~~~~~~~~~~-~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~  222 (262)
                       +...+   ++..+...-.+ .||+||+|+|+++|+||+||++|+|+++++..++...+|+..+........|+
T Consensus       186 ~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~  259 (315)
T PLN02922        186 LTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKALPL  259 (315)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence             11111   12223333333 99999999999999999999999999999999999999987777666555554

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.94  E-value=2e-24  Score=192.29  Aligned_cols=204  Identities=14%  Similarity=0.056  Sum_probs=138.0

Q ss_pred             hhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhh--hhcCCCCCcccCCccCHHHHHHHHHHHHHHHH-
Q 044153            9 VSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEI--DKINKPDLPLASGDLSIGAGITITCTCLLMSL-   85 (262)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~--D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l-   85 (262)
                      ++++|......|++..   +++++++.++.|.++|.+|||+|++.  |+.+..  ...++..++++.+....++..++. 
T Consensus        21 G~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~--~~~~~~~~~~~v~~~~~~~~~ia~~   95 (285)
T TIGR02235        21 GTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKLH--SIVNLTGSRSLVFWLANFFLLIGLV   95 (285)
T ss_pred             HHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccC--CcccccCcHHHHHHHHHHHHHHHHH
Confidence            4455544434576554   46788899999999999999999874  764321  122233467777766665555443 


Q ss_pred             ---HHHHHhhhHHHHHHHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhh-HHHHHHHHHhhcchhHHH--H
Q 044153           86 ---AIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPL-GYFMHIQAQVRAWKTYRV--F  159 (262)
Q Consensus        86 ---~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~--~  159 (262)
                         .+.+..+++.+.++ +.+++.++.||  .||+++|++++ |++.++..+|..+.. ++|.+  +..+. +....  +
T Consensus        96 ~g~~L~~~~~~~~l~lg-~~g~~~~~~Yt--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~yvq--t~~~~-~~~~l~sl  168 (285)
T TIGR02235        96 GIAALSWRWQITVLALV-GLCCFLGYLYQ--GPPFRLGYQGL-GEPICWLCFGPLAIAAALYAQ--SQSFS-LIPWKASI  168 (285)
T ss_pred             HHHHHHHHhhHHHHHHH-HHHHHHHHhhc--CCCcccCCCCc-cHHHHHHHHHHHHHHHHHHHh--CCcCc-HHHHHHHH
Confidence               34444453333344 46888999999  69999999997 788888888865444 34332  11111 11111  2


Q ss_pred             HHHHHHHHHh-hhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 044153          160 KNIDVCSGCQ-VLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESK  224 (262)
Q Consensus       160 ~~~~~~~~~~-~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~  224 (262)
                      +..+...-.+ .||+||+|+|+++|+||+||++|+|++.++...+...+|+..+........|+..
T Consensus       169 ~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~  234 (285)
T TIGR02235       169 LVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPWTT  234 (285)
T ss_pred             HHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            2223333333 9999999999999999999999999999999999999999877766655555543

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.94  E-value=1.8e-26  Score=197.65  Aligned_cols=232  Identities=18%  Similarity=0.144  Sum_probs=172.0

Q ss_pred             hhhhhhhh-hcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhc--CCCCCcccCCccCHHHHHHHHHHHHH
Q 044153            6 MTSVSLLA-PQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKI--NKPDLPLASGDLSIGAGITITCTCLL   82 (262)
Q Consensus         6 ~~~~~~~~-~~~~~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~--n~~~RPl~sG~ls~~~a~~~~~~~~~   82 (262)
                      +||++..| +++.+++.-     +-++-.+.+++++++|.|||..|+|+|++  +.+.||++||++|++++..+-.....
T Consensus        87 tWSIamaAdag~~p~~~m-----L~LFG~GAllMRgAGCtINDlwDkdlD~KVeRtklRPlAsG~ls~~qaI~fL~~ql~  161 (353)
T KOG1381|consen   87 TWSIAMAADAGLLPSIKM-----LALFGVGALLMRGAGCTINDLWDKDLDAKVERTKLRPLASGSLSPRQAIGFLGAQLS  161 (353)
T ss_pred             HHHHHhccCCCccchhHH-----HHHhcccHHHhccCCceehhhhhhhhhhhHhhhcccccccCCcchhHHHHHHHHHHH
Confidence            46666655 233333332     23567889999999999999999999988  45899999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc--hhHHHHH
Q 044153           83 MSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW--KTYRVFK  160 (262)
Q Consensus        83 l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~  160 (262)
                      +|+.+...+|+.+..++. .++...+.|+.      +||.++..++..+..+.....+|+-     +.-|+  |...+-+
T Consensus       162 ~gLgiLlqLn~ysi~lg~-~sl~~v~~ypl------~kr~TY~pq~vLgltfnwGAllGw~-----A~~g~~~~s~~~pl  229 (353)
T KOG1381|consen  162 LGLGILLQLNWYSIALGA-SSLALVITYPL------MKRFTYWPQLVLGLTFNWGALLGWC-----ALKGSLSPSAVLPL  229 (353)
T ss_pred             HhHHHHHhccHHHHHhcc-cccccEEEeeh------hhhcchhHHHHHhhhcchhhhhcch-----hhcCccChhhhhHH
Confidence            999999899988777663 57778889995      8999998877765443322233432     23343  2222222


Q ss_pred             H----HHHHHHHhhhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 044153          161 N----IDVCSGCQVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAF  236 (262)
Q Consensus       161 ~----~~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  236 (262)
                      +    .+...++++|++||.++|.+.|+|+.+.++|++...+ ...+-......+..+|......+   .+..+..+.+.
T Consensus       230 Yls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~w-l~gf~a~~ia~La~aG~~s~q~~---pyy~~lg~~~~  305 (353)
T KOG1381|consen  230 YLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPW-LSGFGAAQIASLAAAGIASDQTW---PYYAALGAVAA  305 (353)
T ss_pred             HHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchH-HhhhhHHHHHHHHHhhhccCCCc---hHHHHHHHHHH
Confidence            2    2444566799999999999999999999999886554 45555666666667777666544   23344677788


Q ss_pred             HHHHHhhcccCCChHHHHHHHH
Q 044153          237 LLLQRARNVDVSSQAAILSFYR  258 (262)
Q Consensus       237 ~l~~~~~~~d~~~~~~~~~f~~  258 (262)
                      ++.+|..++|.+|+++|+..|.
T Consensus       306 ~L~~~i~~vdiDnp~dC~k~f~  327 (353)
T KOG1381|consen  306 RLGSQIYKVDIDNPSDCWKKFK  327 (353)
T ss_pred             HHHhheeeeecCChHHHHHHHH
Confidence            9999999999999999998875

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.93  E-value=5e-25  Score=194.22  Aligned_cols=177  Identities=12%  Similarity=0.029  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 044153           25 FIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWF  104 (262)
Q Consensus        25 ~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~  104 (262)
                      ..+.++.++..++..+++|++|||+|+|+||+|+|+||+|||++|+++++.++.++.++++.+....     ... +...
T Consensus        45 ~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~-i~~~  118 (299)
T PRK13592         45 GIQEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNN-VGWF  118 (299)
T ss_pred             chHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHH
Confidence            3456677777888999999999999999999999999999999999999999988877776666544     111 1233


Q ss_pred             HHHhhc-----cCCCCcccccccchhhhHHHHHHhhhhhhhH--HHHHH-HHHhhcchh-----HHHHHHHHHHHHHh--
Q 044153          105 VLSSAY-----SVDLPFLRWKRNPFLATMYGVLERGLAMPLG--YFMHI-QAQVRAWKT-----YRVFKNIDVCSGCQ--  169 (262)
Q Consensus       105 ~~~~~Y-----s~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g--~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~--  169 (262)
                      +..+.|     +.     ++||.++.|++.++...+.++..+  ++... .....+.+.     .......|+..+++  
T Consensus       119 ~i~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~~~~~~~~l~l~afl~~l~rEI  193 (299)
T PRK13592        119 LFLYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPLLSLPTVLLAFTMYFPSLIWEV  193 (299)
T ss_pred             HHHHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence            445566     76     799999999998887777544222  22110 011222211     12223455556665  


Q ss_pred             hhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHH
Q 044153          170 VLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIA  214 (262)
Q Consensus       170 ~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~  214 (262)
                      .+|++| |||++ |.+|+|+.+|+|++.++...+..++.+...+.
T Consensus       194 ~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~s~lp  236 (299)
T PRK13592        194 CRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILTNFAL  236 (299)
T ss_pred             HHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHHHhhHH
Confidence            999999 88886 59999999999999999888877766654443

>PLN02776 prenyltransferase

Probab=99.93  E-value=1.8e-23  Score=188.79  Aligned_cols=217  Identities=15%  Similarity=0.064  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHH
Q 044153           27 GLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAI-GIMLRSPPLISTIIMW  103 (262)
Q Consensus        27 ~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l-~~~~~~~~~~~~~~~~  103 (262)
                      .+++++++++++++++|++||++|+|+|++++  ++||+|+|++|+++++.++.++.++|+.+ .+..|+.+..++.+..
T Consensus        30 ~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~  109 (341)
T PLN02776         30 GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNI  109 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            45677899999999999999999999998854  89999999999999999999999888854 4567877777664323


Q ss_pred             HHHHhhccCCCCcccccccchhhhHHHHHHhh-hhhhhHHHHHHHHHhhcc-h--hHHHHHHHHHHHH--HhhhcCCChh
Q 044153          104 FVLSSAYSVDLPFLRWKRNPFLATMYGVLERG-LAMPLGYFMHIQAQVRAW-K--TYRVFKNIDVCSG--CQVLDMPDVD  177 (262)
Q Consensus       104 ~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~-~~~~~g~~~~~~~~~~~~-~--~~~~~~~~~~~~~--~~~~~~~D~e  177 (262)
                      .+....||.      +||++... ...+...| .++.+||..     +.|. +  .+.++...++|..  .....++|+|
T Consensus       110 ~ly~~vYt~------lKR~t~~~-~~lG~~~Ga~ppL~Gw~A-----vtg~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~d  177 (341)
T PLN02776        110 LLYAFVYTP------LKQIHPAN-TWVGAVVGAIPPLMGWAA-----ASGQLDAGAMVLAAALYFWQMPHFMALAYMCRD  177 (341)
T ss_pred             HHHHHHHHh------HccCCchh-HHHHHHHHHHHHHHHHHH-----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            344679994      89999875 45555555 455556532     3343 2  2333444455554  3466677888


Q ss_pred             hhHHcCCcccceee--chHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHH
Q 044153          178 GDKEHGIQTLSIAL--GKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILS  255 (262)
Q Consensus       178 ~D~~~G~~Tlpv~~--G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~  255 (262)
                      +|+++|+|++|+.-  |++.++......+.+..+.++.... ...  ..+++..+.......+.+..+-.+.+|++..++
T Consensus       178 Dy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~-g~~--~~~~~~~a~~l~~~~l~~~~~~~~~~~~~~ar~  254 (341)
T PLN02776        178 DYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDW-GVT--SSPFALEAALLTAYLAASAASFYREPTNANARK  254 (341)
T ss_pred             HHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            99999999999976  4554544433333222222222111 111  122344444444555666666565556555544


Q ss_pred             HHH
Q 044153          256 FYR  258 (262)
Q Consensus       256 f~~  258 (262)
                      .|.
T Consensus       255 ~F~  257 (341)
T PLN02776        255 MFH  257 (341)
T ss_pred             HHH
Confidence            443

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.92  E-value=2e-23  Score=185.06  Aligned_cols=167  Identities=19%  Similarity=0.155  Sum_probs=109.8

Q ss_pred             HHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHH----HH-HHHHHHHHhhhHHHHHHHHHHHHHHhhccC
Q 044153           38 VNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTC----LL-MSLAIGIMLRSPPLISTIIMWFVLSSAYSV  112 (262)
Q Consensus        38 ~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~----~~-l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~  112 (262)
                      .+.+.|++|||+|+|.|+.|++++.. .|.++++|.+......    .. .++.+....+++.+.++ ..+++.++.|| 
T Consensus        46 ~n~am~~~Ndy~D~~~d~dn~r~~g~-~g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~-~~ai~~~~~YS-  122 (282)
T PRK13105         46 YNLAMYGINDVFDYESDLRNPRKGGV-EGAVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVL-AVSVFAVVAYS-  122 (282)
T ss_pred             HHHHHHhhhhhhhhhcCCCCcccCCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhc-
Confidence            34444677999999999999765443 4889999884432222    22 23333333344444444 47888999999 


Q ss_pred             CCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhHHHHHH--HHHHH--HHhhhcCCChhhhHHcCCccc
Q 044153          113 DLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTYRVFKN--IDVCS--GCQVLDMPDVDGDKEHGIQTL  187 (262)
Q Consensus       113 ~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~--~~~~~--~~~~~~~~D~e~D~~~G~~Tl  187 (262)
                       .||.|+|++|+.++++...........|.+.     ..+. +...+++.  .+++.  +..+||+||+|+||+.|+||+
T Consensus       123 -~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~-----~~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tl  196 (282)
T PRK13105        123 -APGLRFKERPFLDSLTSSTHFVSPALYGLVL-----AGAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASI  196 (282)
T ss_pred             -CCCccccccchHHHHHHHHHHHHHHHHHHHH-----hhccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccc
Confidence             5999999999988754433332122222211     1111 22112211  22222  334999999999999999999


Q ss_pred             ceeechHHHHHHHHHHHHHHHHHHHH
Q 044153          188 SIALGKEKVLWLGVYMLLVVYGALVI  213 (262)
Q Consensus       188 pv~~G~~~~~~~~~~l~~~~~~~~l~  213 (262)
                      |+++|+|++.+++..++.++++..+.
T Consensus       197 pv~lG~~~a~~~~~~l~~~a~~~~~~  222 (282)
T PRK13105        197 ATVLGARRTVRLAVGLYAAAAVLMLA  222 (282)
T ss_pred             hHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888876664

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.91  E-value=2.8e-22  Score=178.07  Aligned_cols=167  Identities=21%  Similarity=0.293  Sum_probs=104.0

Q ss_pred             HHHHHHHhhhhhchhhhhcCCCCCcccCCccCH--HHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCCC
Q 044153           38 VNIYEVGVNQLYDVEIDKINKPDLPLASGDLSI--GAGIT-ITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDL  114 (262)
Q Consensus        38 ~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~--~~a~~-~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~  114 (262)
                      .+...|++|||+|+|+|+.|+++|.  ++...+  +.+.. .......+++.+....++...... +.+++.++.||  .
T Consensus        57 ~Nl~~y~iND~~D~D~Dr~~prk~~--~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~l-l~~i~~~~~YS--~  131 (282)
T PRK12875         57 ANVFLYGVNDVFDADTDELNPKKDR--EREVRYRGDRRVLVAVALSGALALAFLLVLPPAAWPAL-LAFLVLSVEYS--A  131 (282)
T ss_pred             HHHHHhcchhhhhhhccccCCCccC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHc--C
Confidence            3455677999999999999886653  121221  11111 222223344444434343323332 45778899999  6


Q ss_pred             CcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhHHHHHHHHHHHHH--hhhcCCChhhhHHcCCcccceee
Q 044153          115 PFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTYRVFKNIDVCSGC--QVLDMPDVDGDKEHGIQTLSIAL  191 (262)
Q Consensus       115 pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~D~e~D~~~G~~Tlpv~~  191 (262)
                      ||+|+|++|+.+..+.+.. ..++..+++.     ..+. ++..++...+++...  .+|++||+|+|+++|+||+|+++
T Consensus       132 pP~rlk~~p~~~~~~~g~~-~~~~~~~y~~-----~tg~~~~~~l~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~l  205 (282)
T PRK12875        132 PPLRFKTTPVLDSLSNGLY-ILPGVAAYAL-----VSGSLPPLLAVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVL  205 (282)
T ss_pred             CCccchhccHHHHHHHHHH-HHHHHHHHHH-----HcCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhc
Confidence            9999999998765443321 1222334332     2233 333333333344433  38999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHH
Q 044153          192 GKEKVLWLGVYMLLVVYGALVIAG  215 (262)
Q Consensus       192 G~~~~~~~~~~l~~~~~~~~l~~~  215 (262)
                      |+|++++++..+..++.......+
T Consensus       206 G~~~a~~~~~~~~~~a~~~~~~~~  229 (282)
T PRK12875        206 GERRTYAYCAACWLLAAAAFAAVD  229 (282)
T ss_pred             cHhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999888888777766666544

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.91  E-value=5.6e-22  Score=174.85  Aligned_cols=204  Identities=14%  Similarity=0.096  Sum_probs=138.7

Q ss_pred             hhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh--hhhc----CCCCCcccCCccCHHHHHHHHHHHH
Q 044153            8 SVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVE--IDKI----NKPDLPLASGDLSIGAGITITCTCL   81 (262)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~--~D~~----n~~~RPl~sG~ls~~~a~~~~~~~~   81 (262)
                      .++++|......   ..++.++++++++.+.+..+|..|||+|++  .|.+    ++.++-+.+.+++++..+.....+.
T Consensus        29 ~G~a~A~~~~~~---f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~  105 (303)
T COG1575          29 VGTALAFWYGKS---FNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLL  105 (303)
T ss_pred             HHHHHHHHHccc---hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCHHHHHHHHHHHH
Confidence            355555555333   346778899999999999999999999986  5643    2344455556666776665554444


Q ss_pred             HHHH----HHHHHhhhHHHHHHHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhh-hhhHHHHHHHHHhhcchhH
Q 044153           82 LMSL----AIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLA-MPLGYFMHIQAQVRAWKTY  156 (262)
Q Consensus        82 ~l~l----~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~  156 (262)
                      ..+.    .+....++. ++....++.+.++.|+.  +|+++++.|+ |++.++..+|.. +..++|.+  +   +.-.+
T Consensus       106 ~g~~llg~~~~~~s~~~-~l~lG~l~~~~g~~YTg--Gp~PlgY~gL-GEi~~~vffG~l~v~g~~yiq--t---~~~~~  176 (303)
T COG1575         106 AGLALLGVILAALSDWL-VLLLGLLCIAAGILYTG--GPFPLGYMGL-GEIFVGVFFGPLIVLGAYYIQ--T---GRLSW  176 (303)
T ss_pred             HHHHHHHHHHHHHhhhH-HHHHHHHHHHheeeecc--CCcCcccCCH-HHHHHHHHHHHHHHHHHHHHh--c---ccchH
Confidence            3333    233333444 44444578899999994  8989999997 788888888864 34455442  1   11111


Q ss_pred             HHH----HHHHHHHHHh-hhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Q 044153          157 RVF----KNIDVCSGCQ-VLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLES  223 (262)
Q Consensus       157 ~~~----~~~~~~~~~~-~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~  223 (262)
                      ..+    .........+ .||+||+|+|+|+|++|+||++|+++++.+...++..+|+..++.......++.
T Consensus       177 ~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~~  248 (303)
T COG1575         177 AILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVW  248 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            121    1222233333 999999999999999999999999999999999998888877775555544443

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.1e-22  Score=177.12  Aligned_cols=219  Identities=14%  Similarity=0.146  Sum_probs=150.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhchhhhhc--CCCCCcccCCccCHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHH
Q 044153           25 FIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKI--NKPDLPLASGDLSIGAGITITCTCLLMSLAIG-IMLRSPPLISTII  101 (262)
Q Consensus        25 ~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~--n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~-~~~~~~~~~~~~~  101 (262)
                      ....+++++++.+..+++|++|+++|+|+|++  ++++||+++|+++++|++.++.++.++|+... +..|+.+..+.+.
T Consensus        51 ~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~  130 (304)
T COG0109          51 PLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLF  130 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33457789999999999999999999999999  56899999999999999999999999999887 5567666665555


Q ss_pred             HHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc---hhHHHHHHHHHHH----HHh-hhcC
Q 044153          102 MWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW---KTYRVFKNIDVCS----GCQ-VLDM  173 (262)
Q Consensus       102 ~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~-~~~~  173 (262)
                      ...+..+.||.     .+||++..+.+.++...+.++.+||.     ++.|+   ..+.++.+.|+|.    +.+ .+-.
T Consensus       131 gi~~Yv~vYT~-----~lKR~T~~NiviGg~aGa~PpliGwa-----Avtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~  200 (304)
T COG0109         131 GIFFYVVVYTL-----WLKRRTPQNIVIGGFAGAMPPLIGWA-----AVTGSISLGAILLFAIIFLWTPPHFWALALKYK  200 (304)
T ss_pred             HHHHHhhhhhh-----hccCCcccceeeeeccccccccceee-----eeeCCCCchHHHHHHHHHHhccHHHHHHHHHHH
Confidence            55567899997     79999987666666655566667763     25555   2344556667775    444 5555


Q ss_pred             CChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcc-cCCChHH
Q 044153          174 PDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNV-DVSSQAA  252 (262)
Q Consensus       174 ~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-d~~~~~~  252 (262)
                      +|+   +++|++.+|++-|++.+++.......+.....+.....+   ..+.+|.+...++...+.....+. .-+|++.
T Consensus       201 ~DY---~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~g---~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~  274 (304)
T COG0109         201 DDY---KAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALLG---YVGYLYLVVATLLGAWFLALAWKLYRKDDRKW  274 (304)
T ss_pred             HHH---HHcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHHHHHHHHHHhCccHHH
Confidence            566   899999999999999998765544444443333333322   222233333333333333333322 2256666


Q ss_pred             HHHHHHh
Q 044153          253 ILSFYRF  259 (262)
Q Consensus       253 ~~~f~~~  259 (262)
                      .++.|.+
T Consensus       275 A~klF~~  281 (304)
T COG0109         275 ARKLFKY  281 (304)
T ss_pred             HHHHHHH
Confidence            6666554

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.82  E-value=1.4e-18  Score=155.03  Aligned_cols=112  Identities=28%  Similarity=0.346  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcC--CCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 044153           24 FFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKIN--KPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTII  101 (262)
Q Consensus        24 ~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n--~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~  101 (262)
                      .+...++.+++.++.++++|++||++|+|+||+|  ||+||++||++|+++++.++.++..+|+.+++..|+...... .
T Consensus        44 ~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~-~  122 (295)
T PRK12324         44 ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVL-L  122 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            3555667777788899999999999999999995  799999999999999999999999999988888887665554 4


Q ss_pred             HHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhH
Q 044153          102 MWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLG  141 (262)
Q Consensus       102 ~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g  141 (262)
                      .+.+..+.||.     ++||++..+.+..+..++..+..|
T Consensus       123 ~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~~~G  157 (295)
T PRK12324        123 VYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRAIAG  157 (295)
T ss_pred             HHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHHHHH
Confidence            67788899996     899999998888877666444333

>PRK08238 hypothetical protein; Validated

Probab=99.81  E-value=4e-18  Score=161.62  Aligned_cols=152  Identities=22%  Similarity=0.234  Sum_probs=116.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcC--CCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 044153           21 TPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKIN--KPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLIS   98 (262)
Q Consensus        21 ~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n--~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~   98 (262)
                      ++..+...++.+++..++.+++|++||++|+|+||++  ||+||++||++|+++++.++.++.++|+.+++.+|+..+..
T Consensus       221 ~~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~  300 (479)
T PRK08238        221 DLQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLV  300 (479)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            3444666778888888999999999999999999996  69999999999999999999999999999998888744444


Q ss_pred             HHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhHHHHHHH--HHHHHHhhhcCCC
Q 044153           99 TIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTYRVFKNI--DVCSGCQVLDMPD  175 (262)
Q Consensus        99 ~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~D  175 (262)
                       .+.++++..+||.     ++||+++.++++.+..++..+..|...      .+. ++.+++...  +.++....|...|
T Consensus       301 -~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~~G~~a------~~~~~s~wll~~~~~~~l~la~~KR~~E  368 (479)
T PRK08238        301 -LLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRIIAGAAA------IGVALSFWLLAFSMFFFLSLALVKRYTE  368 (479)
T ss_pred             -HHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHHHHHHH------hccCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence             3467788999996     799999999988887776555555322      122 222332222  2233444888888


Q ss_pred             hhhhHHcCC
Q 044153          176 VDGDKEHGI  184 (262)
Q Consensus       176 ~e~D~~~G~  184 (262)
                      .+++++.|.
T Consensus       369 l~~~~~~~~  377 (479)
T PRK08238        369 LRRALQRGK  377 (479)
T ss_pred             HHHHHhcCC
Confidence            888888876

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.13  E-value=1.7e-10  Score=101.96  Aligned_cols=168  Identities=14%  Similarity=0.147  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhchhhhhc--CCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHH
Q 044153           27 GLLKAIVPGLLVNIYEVGVNQLYDVEIDKI--NKPDLPLASGDLSIGAGITITCTCLLMSLAIGIM-LRSPPLISTIIMW  103 (262)
Q Consensus        27 ~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~--n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~  103 (262)
                      .++.+.+|..+..++.|++||+++.+.|++  +++.||+++|++++.+|..++.+....|..+.++ .|+....++..=.
T Consensus       128 ~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rplv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni  207 (409)
T KOG1380|consen  128 TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRPLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNI  207 (409)
T ss_pred             hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccccccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcch
Confidence            456789999999999999999999999998  4589999999999999999999888888776655 5665555543223


Q ss_pred             HHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc--hhHHHHH-HHHHHHH----Hh-hhcCCC
Q 044153          104 FVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW--KTYRVFK-NIDVCSG----CQ-VLDMPD  175 (262)
Q Consensus       104 ~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~-~~~~~~~----~~-~~~~~D  175 (262)
                      .+.+.+|+      .+||......=.+++..+++..+||-.     ..|.  +..+++. +++.|-|    ++ .+--.|
T Consensus       208 ~LY~~vYT------PlKrihiinTWvGavVGAIPPLMGwAA-----asg~l~~ga~iLa~~LyaWQfPHFnaLS~~lR~D  276 (409)
T KOG1380|consen  208 FLYAGVYT------PLKRIHIINTWVGAVVGAIPPLMGWAA-----ASGLLDPGAMILAGILYAWQFPHFNALSWNLRND  276 (409)
T ss_pred             heeecccc------chhhhhhhhhHHHHHhccCCccchhhh-----hccCCCccHHHHHHHHHHhcccchhhhhhhhchh
Confidence            34678899      589976543222222223344566532     2232  2222222 2333432    12 222235


Q ss_pred             hhhhHHcCCcccceee---chHHHHHHHHHHHHHHH
Q 044153          176 VDGDKEHGIQTLSIAL---GKEKVLWLGVYMLLVVY  208 (262)
Q Consensus       176 ~e~D~~~G~~Tlpv~~---G~~~~~~~~~~l~~~~~  208 (262)
                      +   ++.|.|.+++.=   -++.+.+....++.++|
T Consensus       277 Y---s~~GY~Mma~~np~l~rr~alr~s~a~~~L~~  309 (409)
T KOG1380|consen  277 Y---SKAGYRMMAVTNPGLCRRVALRYSLAFLPLSY  309 (409)
T ss_pred             h---hhccEEEEEeeccchhhHHHHHHHHHHhhhhc
Confidence            5   899999998863   34445565555555544

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=98.88  E-value=1e-09  Score=92.95  Aligned_cols=181  Identities=18%  Similarity=0.125  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhch--hhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHH---HHHHHhhhH---HHHHHHH
Q 044153           30 KAIVPGLLVNIYEVGVNQLYDV--EIDKINKPDLPLASGDLSIGAGITITCTCLLMSL---AIGIMLRSP---PLISTII  101 (262)
Q Consensus        30 l~~l~~~l~~~a~~~iNd~~D~--~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l---~l~~~~~~~---~~~~~~~  101 (262)
                      ++-++.+.++.++|..|.|+|.  .+|++...+|.++.-.+.+.+...+..++...|.   +..+.+++.   -+.+...
T Consensus       103 l~a~avlavh~agnlvntyfdf~kgid~kkaddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyf  182 (359)
T KOG4581|consen  103 LCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYF  182 (359)
T ss_pred             HHHhhheeeecccchhhhhhhhhhccccccccchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhc
Confidence            4455667789999999999997  4888888899999999999998888777766543   222233321   1222223


Q ss_pred             HHHHHHhhccCCCCcccccccchhhhHHHHHHhhhh-hhhHHHHHHHHHhhcchhHHHHHHHHHHH-HHh-hhcCCChhh
Q 044153          102 MWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLA-MPLGYFMHIQAQVRAWKTYRVFKNIDVCS-GCQ-VLDMPDVDG  178 (262)
Q Consensus       102 ~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~D~e~  178 (262)
                      .++-.+.+|+.|   +.+|+..+ +.++..+.+|.+ +.+++-.  |.......+...-....+.+ ..+ .|+.||.|.
T Consensus       183 ggls~sflytgg---igfkyial-gdliili~fgpiavlfaf~~--q~g~l~~~~l~yaiplalnteailhsnntrd~dn  256 (359)
T KOG4581|consen  183 GGLSGSFLYTGG---IGFKYIAL-GDLIILILFGPIAVLFAFAI--QTGHLAIFPLGYAIPLALNTEAILHSNNTRDADN  256 (359)
T ss_pred             cCcccceeEecc---cceEEEec-cCEEEEEeechHHHHHHHHH--hcCceeEEeehheeeeccchHHHhccCCCccccc
Confidence            455678899964   47787765 344333333321 1122211  11000000100000011122 222 899999999


Q ss_pred             hHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHh
Q 044153          179 DKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGA  216 (262)
Q Consensus       179 D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~  216 (262)
                      ||++|+-|+++.+|+..+-.++..++.+.|.+..+.+.
T Consensus       257 dr~agivtlailig~t~s~ily~~llf~py~lf~i~~~  294 (359)
T KOG4581|consen  257 DREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFAL  294 (359)
T ss_pred             ccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998887888788888876665544

>PRK13591 ubiA prenyltransferase; Provisional

Probab=94.23  E-value=0.3  Score=44.14  Aligned_cols=66  Identities=20%  Similarity=0.275  Sum_probs=37.1

Q ss_pred             HhhhhhchhhhhcCC-CCCcccCCccCHHHHHHHHHHHHH-------HHHHHHHHh-hhHHHHHHHHHHHHHHhhccC
Q 044153           44 GVNQLYDVEIDKINK-PDLPLASGDLSIGAGITITCTCLL-------MSLAIGIML-RSPPLISTIIMWFVLSSAYSV  112 (262)
Q Consensus        44 ~iNd~~D~~~D~~n~-~~RPl~sG~ls~~~a~~~~~~~~~-------l~l~l~~~~-~~~~~~~~~~~~~~~~~~Ys~  112 (262)
                      .+||+.|.|.|+++. +.-|+.=|   ++.+..+...+.+       ++....+.. .+...+.+++.++...+.|+.
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG---~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLG---EQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEEC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence            579999999999865 44465434   4444332222211       122222221 122344456778888999995

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=93.88  E-value=0.26  Score=43.74  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=22.4

Q ss_pred             HHHHHHHHHhhhhhchhhhhcCC-CCCcccCCc
Q 044153           36 LLVNIYEVGVNQLYDVEIDKINK-PDLPLASGD   67 (262)
Q Consensus        36 ~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG~   67 (262)
                      ++....-+.+||.-|+|.|++++ +.=|..-|+
T Consensus       171 fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~  203 (285)
T PRK12872        171 FLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK  203 (285)
T ss_pred             HHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence            34455566889999999999854 555655453

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=93.72  E-value=0.28  Score=44.14  Aligned_cols=46  Identities=20%  Similarity=0.060  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHH
Q 044153           28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGIT   75 (262)
Q Consensus        28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~   75 (262)
                      .++.-++..+..+..+..|+..|.|+|++|+++.+..  ++..+.++.
T Consensus       178 ~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~  223 (303)
T COG1575         178 ILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARK  223 (303)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHH
Confidence            3455566667778888999999999999988765432  344444443

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=91.35  E-value=1.6  Score=39.73  Aligned_cols=49  Identities=14%  Similarity=0.096  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhchhhhhcCCCCC-cccCCccCHHHHHHHHHHHH
Q 044153           30 KAIVPGLLVNIYEVGVNQLYDVEIDKINKPDL-PLASGDLSIGAGITITCTCL   81 (262)
Q Consensus        30 l~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~R-Pl~sG~ls~~~a~~~~~~~~   81 (262)
                      +..+...+..+.....||+.|+|.|+++.++. |.   ++.++.+..+...+.
T Consensus       193 l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~  242 (317)
T PRK13387        193 VISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILF  242 (317)
T ss_pred             HHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHH
Confidence            34555566677778899999999999876443 33   345666555443333

>PLN00012 chlorophyll synthetase; Provisional

Probab=89.95  E-value=2.6  Score=39.30  Aligned_cols=31  Identities=26%  Similarity=0.262  Sum_probs=23.4

Q ss_pred             HHHHHHHHhhhhhchhhhhcC-CCCCcccCCc
Q 044153           37 LVNIYEVGVNQLYDVEIDKIN-KPDLPLASGD   67 (262)
Q Consensus        37 l~~~a~~~iNd~~D~~~D~~n-~~~RPl~sG~   67 (262)
                      +...+....||+-|+|.|++. ++.-|+.-|+
T Consensus       263 l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        263 IAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence            456667789999999999884 4666765554

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=89.78  E-value=1.3  Score=39.55  Aligned_cols=36  Identities=11%  Similarity=-0.024  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHhhhhhchhhhhcCC-CCCcccCCc
Q 044153           32 IVPGLLVNIYEVGVNQLYDVEIDKINK-PDLPLASGD   67 (262)
Q Consensus        32 ~l~~~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG~   67 (262)
                      .+..++.+..-...|++.|+|.|+++. |.-|..-|+
T Consensus       171 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~  207 (285)
T PRK12847        171 YIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN  207 (285)
T ss_pred             HHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence            344455666677789999999999854 666665553

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=89.72  E-value=2.7  Score=37.98  Aligned_cols=37  Identities=16%  Similarity=0.090  Sum_probs=25.4

Q ss_pred             HHHHHHHHhhhhhchhhhhcCCCCC-cccCCccCHHHHHHH
Q 044153           37 LVNIYEVGVNQLYDVEIDKINKPDL-PLASGDLSIGAGITI   76 (262)
Q Consensus        37 l~~~a~~~iNd~~D~~~D~~n~~~R-Pl~sG~ls~~~a~~~   76 (262)
                      +..+.....||+.|+|+|+++.++. |.   ++.++.+..+
T Consensus       185 ll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l  222 (304)
T PRK07419        185 LATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQL  222 (304)
T ss_pred             HHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHH
Confidence            5566777899999999999976543 32   3445555543

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=89.66  E-value=2.6  Score=37.71  Aligned_cols=56  Identities=16%  Similarity=0.123  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhhcCC-CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHh
Q 044153           33 VPGLLVNIYEVGVNQLYDVEIDKINK-PDLPLASGDLSIGAGITITCTCLLMSLAIGIML   91 (262)
Q Consensus        33 l~~~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~   91 (262)
                      ++..+...+...+|++-|+|.|++.+ +.-|.   ++.++.++.+...+.+++..+....
T Consensus       172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~~~~~  228 (282)
T PRK12875        172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAAFAAV  228 (282)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHHHHHH
Confidence            33456667778999999999999854 44443   3456666655555555554443333

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=89.46  E-value=1.5  Score=39.08  Aligned_cols=36  Identities=19%  Similarity=0.102  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHhhhhhchhhhhcC-CCCCcccCCc
Q 044153           32 IVPGLLVNIYEVGVNQLYDVEIDKIN-KPDLPLASGD   67 (262)
Q Consensus        32 ~l~~~l~~~a~~~iNd~~D~~~D~~n-~~~RPl~sG~   67 (262)
                      .++.++-+.+-..+|++.|+|.|++. .|.-|..-|+
T Consensus       166 ~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  202 (281)
T TIGR01474       166 YLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD  202 (281)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence            44555667778889999999999984 4666776664

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=89.37  E-value=2.7  Score=38.10  Aligned_cols=29  Identities=24%  Similarity=0.171  Sum_probs=21.6

Q ss_pred             HHHHHHHhhhhhchhhhhcC-CCCCcccCC
Q 044153           38 VNIYEVGVNQLYDVEIDKIN-KPDLPLASG   66 (262)
Q Consensus        38 ~~~a~~~iNd~~D~~~D~~n-~~~RPl~sG   66 (262)
                      ...+....||+.|+|.|+++ ++.-|+.-|
T Consensus       201 ~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G  230 (314)
T PRK07566        201 GAHGIMTLNDFKSVEGDRQLGLRSLPVVFG  230 (314)
T ss_pred             HHHHHHHHHHHHHhHhHHHcCCcccceeEc
Confidence            45556789999999999985 455666545

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=89.06  E-value=3.4  Score=36.92  Aligned_cols=58  Identities=10%  Similarity=0.082  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHhhhhhchhhhhcCCC-CCcccCCccCHHHHHHHHHHHHHHHHHHHHHhh
Q 044153           32 IVPGLLVNIYEVGVNQLYDVEIDKINKP-DLPLASGDLSIGAGITITCTCLLMSLAIGIMLR   92 (262)
Q Consensus        32 ~l~~~l~~~a~~~iNd~~D~~~D~~n~~-~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~   92 (262)
                      ..+..+...+...+||+-|.|.||++.+ .=|.   ++.++.+..+...+..++.+.....+
T Consensus       166 ~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        166 LAAFFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455778889999999999998553 3342   45677777766666666554443333

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=88.89  E-value=2.3  Score=38.92  Aligned_cols=32  Identities=25%  Similarity=0.282  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHhhhhhchhhhhcCC-CCCcccCC
Q 044153           35 GLLVNIYEVGVNQLYDVEIDKINK-PDLPLASG   66 (262)
Q Consensus        35 ~~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG   66 (262)
                      .++...+...+||+.|+|.|++.. +.-|+.=|
T Consensus       189 ~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G  221 (331)
T PRK12392        189 NFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIG  221 (331)
T ss_pred             HHHHHHHHHHHHcccchhhHHHcCCeeeEeEEc
Confidence            345566777789999999999854 44455433

>PLN02922 prenyltransferase

Probab=88.18  E-value=3.3  Score=37.64  Aligned_cols=46  Identities=20%  Similarity=0.117  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHH
Q 044153           29 LKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITI   76 (262)
Q Consensus        29 ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~   76 (262)
                      ++..+...+..+.....||+.|+|.|+++.++...  =++.++.+..+
T Consensus       191 ~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~--v~lG~~~a~~l  236 (315)
T PLN02922        191 LSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPL--VRLGTEKGSRV  236 (315)
T ss_pred             HHHHHHHHHHHHHHHHHccCcchhhHHHcCcccee--eEEChHHHHHH
Confidence            34445555677778889999999999997655422  23455555543

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=87.72  E-value=1.6  Score=38.79  Aligned_cols=33  Identities=18%  Similarity=0.012  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHhhhhhchhhhhcC-CCCCcccCC
Q 044153           34 PGLLVNIYEVGVNQLYDVEIDKIN-KPDLPLASG   66 (262)
Q Consensus        34 ~~~l~~~a~~~iNd~~D~~~D~~n-~~~RPl~sG   66 (262)
                      ..++-+..-..+||..|+|.|++. .|.-|+.-|
T Consensus       166 ~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G  199 (282)
T TIGR01475       166 GVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFG  199 (282)
T ss_pred             HHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhc
Confidence            344455566779999999999874 466677666

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=87.47  E-value=4.6  Score=36.43  Aligned_cols=36  Identities=31%  Similarity=0.276  Sum_probs=23.8

Q ss_pred             HHHHHHHhhhhhchhhhhcCC-CCCcccCCccCHHHHHHH
Q 044153           38 VNIYEVGVNQLYDVEIDKINK-PDLPLASGDLSIGAGITI   76 (262)
Q Consensus        38 ~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG~ls~~~a~~~   76 (262)
                      ...+....||+.|+|.|+++. +.-|..-|   ++.+...
T Consensus       195 ~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG---~~~a~~~  231 (306)
T TIGR02056       195 AGLGIAIVNDFKSVEGDRALGLQSLPVAFG---IETAAWI  231 (306)
T ss_pred             HHHHHHHHHHccChHHHHHcCCcCcchhcC---hHHHHHH
Confidence            455666899999999999854 44455444   4444433

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=87.21  E-value=2.2  Score=38.19  Aligned_cols=40  Identities=15%  Similarity=0.050  Sum_probs=25.9

Q ss_pred             HHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHH
Q 044153           37 LVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITC   78 (262)
Q Consensus        37 l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~   78 (262)
                      +........||..|+|.|+++.++...  -++.++.++.+..
T Consensus       175 ~l~~~il~~Nn~~D~~~D~~~Gk~Tl~--v~lG~~~a~~l~~  214 (284)
T TIGR00751       175 LLACAVLNINNLRDIPTDARAGKNTLA--VRLGDARTRMYHQ  214 (284)
T ss_pred             HHHHHHHHHcCcccchhHHHcCCEeeh--hhcchHhHHHHHH
Confidence            344667779999999999986544321  2455666654433

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=86.61  E-value=5  Score=35.46  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHhhhhhchhhhhcCC-CCCcccCCc
Q 044153           34 PGLLVNIYEVGVNQLYDVEIDKINK-PDLPLASGD   67 (262)
Q Consensus        34 ~~~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG~   67 (262)
                      ..++....-...||+.|+|.|+++. +.-|..-|+
T Consensus       163 ~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~  197 (279)
T PRK12884        163 MAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGE  197 (279)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcH
Confidence            3345555678899999999998854 555654443

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=85.94  E-value=3.3  Score=37.15  Aligned_cols=32  Identities=22%  Similarity=0.133  Sum_probs=22.3

Q ss_pred             HHHHHHHHHhhhhhchhhhhcC-CCCCcccCCc
Q 044153           36 LLVNIYEVGVNQLYDVEIDKIN-KPDLPLASGD   67 (262)
Q Consensus        36 ~l~~~a~~~iNd~~D~~~D~~n-~~~RPl~sG~   67 (262)
                      ++-+.+-..+|++.|+|.|++. .|.-|+.-|+
T Consensus       172 ~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~  204 (291)
T PRK12886        172 LFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV  204 (291)
T ss_pred             HHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence            3334445567888999999874 4777776665

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=85.90  E-value=5.5  Score=35.33  Aligned_cols=36  Identities=19%  Similarity=0.183  Sum_probs=23.9

Q ss_pred             HHHHHHHhhhhhchhhhhcCC-CCCcccCCccCHHHHHHH
Q 044153           38 VNIYEVGVNQLYDVEIDKINK-PDLPLASGDLSIGAGITI   76 (262)
Q Consensus        38 ~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG~ls~~~a~~~   76 (262)
                      ...+....||+.|.|.|+++. +.-|..=|   ++.+..+
T Consensus       173 ~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG---~~~a~~l  209 (283)
T TIGR01476       173 GAHGIMTLNDFKSVEGDRQLGLRSLPVMIG---VKRAAIV  209 (283)
T ss_pred             HHHHHHHHHhccchhhHHHcCCcCcceEEc---HHHHHHH
Confidence            355567899999999999854 44555444   4444443

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=85.77  E-value=5.4  Score=35.69  Aligned_cols=55  Identities=11%  Similarity=-0.054  Sum_probs=33.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCC-cccCCccCHHHHHHHHHH
Q 044153           18 ADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDL-PLASGDLSIGAGITITCT   79 (262)
Q Consensus        18 ~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~R-Pl~sG~ls~~~a~~~~~~   79 (262)
                      ..+++..+.   . .+...+...+....||+.|+|+|+++.++. |.   ++.++.+..+...
T Consensus       157 ~~~~~~~~l---~-sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~  212 (285)
T TIGR02235       157 QSFSLIPWK---A-SILVGLATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPW  212 (285)
T ss_pred             CcCcHHHHH---H-HHHHHHHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHH
Confidence            456665553   1 222235566777899999999999865443 32   4556665544333

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=85.65  E-value=3.6  Score=36.78  Aligned_cols=34  Identities=18%  Similarity=-0.090  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHhhhhhchhhhhcCC-CCCcccCCc
Q 044153           34 PGLLVNIYEVGVNQLYDVEIDKINK-PDLPLASGD   67 (262)
Q Consensus        34 ~~~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG~   67 (262)
                      ...+-+.+-..+|++.|+|.|++.. |.-|..-|+
T Consensus       167 ~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~  201 (284)
T PRK12888        167 AVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV  201 (284)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence            3444566678999999999999854 666665453

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=85.43  E-value=4  Score=36.34  Aligned_cols=46  Identities=9%  Similarity=0.015  Sum_probs=30.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC-CCCcccCCc
Q 044153           18 ADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK-PDLPLASGD   67 (262)
Q Consensus        18 ~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG~   67 (262)
                      .+++...+    +..+..++-+..-...|++.|+|.|++++ |.-|+.-|+
T Consensus       158 ~~~~~~~~----~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  204 (282)
T PRK12848        158 GSVPLEAW----LLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR  204 (282)
T ss_pred             CCCcHHHH----HHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcc
Confidence            34554443    23344455566667789999999999854 666776554

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=85.37  E-value=5.6  Score=35.41  Aligned_cols=45  Identities=20%  Similarity=0.175  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHhhhhhchhhhhcCC-CCCcccCCccCHHHHHHHHHH
Q 044153           32 IVPGLLVNIYEVGVNQLYDVEIDKINK-PDLPLASGDLSIGAGITITCT   79 (262)
Q Consensus        32 ~l~~~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG~ls~~~a~~~~~~   79 (262)
                      .+...+........||+.|+|.|+++. +.-|.   ++.++.+..+...
T Consensus       174 ~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v---~lG~~~a~~~~~~  219 (293)
T PRK06080        174 ALPCGLLIGAVLLANNIRDIETDRENGKNTLAV---RLGDKNARRLHAA  219 (293)
T ss_pred             HHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEe---eECcHhHHHHHHH
Confidence            333445566677899999999999865 33343   3445555444333

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=83.93  E-value=4.4  Score=36.27  Aligned_cols=46  Identities=13%  Similarity=-0.048  Sum_probs=30.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC-CCCcccCCc
Q 044153           18 ADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK-PDLPLASGD   67 (262)
Q Consensus        18 ~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG~   67 (262)
                      +++++..+    +..+..++-+.+-..+|++.|+|.|++.. |.-|+.-|+
T Consensus       162 g~~~~~~~----~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~  208 (290)
T PRK12870        162 GHLDLGTW----LLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGR  208 (290)
T ss_pred             CCCCHHHH----HHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhcc
Confidence            34555443    22345566777788899999999999854 655654443

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=83.55  E-value=5.8  Score=35.78  Aligned_cols=35  Identities=17%  Similarity=0.134  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHhhhhhchhhhhcCC-CCCcccCC
Q 044153           32 IVPGLLVNIYEVGVNQLYDVEIDKINK-PDLPLASG   66 (262)
Q Consensus        32 ~l~~~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG   66 (262)
                      .++.++-..+-..+|++-|+|.|++.. +.-|+.=|
T Consensus       183 ~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G  218 (300)
T PRK13106        183 VIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG  218 (300)
T ss_pred             HHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence            445566667778899999999998754 66666444

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=83.46  E-value=8.4  Score=34.03  Aligned_cols=31  Identities=23%  Similarity=0.349  Sum_probs=22.9

Q ss_pred             HHHHHHHHHhhhhhchhhhhcCC-CCCcccCC
Q 044153           36 LLVNIYEVGVNQLYDVEIDKINK-PDLPLASG   66 (262)
Q Consensus        36 ~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG   66 (262)
                      ++...+-..+||+-|.|.|++++ |.-|..-|
T Consensus       167 fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G  198 (276)
T PRK12882        167 ALATLAREIIKDVEDIEGDRAEGARTLPILIG  198 (276)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHcCCccccHHhh
Confidence            34556678899999999999854 66666545

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=83.22  E-value=4.4  Score=36.32  Aligned_cols=35  Identities=20%  Similarity=0.121  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhhcC-CCCCcccCCc
Q 044153           33 VPGLLVNIYEVGVNQLYDVEIDKIN-KPDLPLASGD   67 (262)
Q Consensus        33 l~~~l~~~a~~~iNd~~D~~~D~~n-~~~RPl~sG~   67 (262)
                      +..++-+.+-..+|++.|+|.|++. .|.-|..-|+
T Consensus       174 ~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~  209 (291)
T PRK12874        174 LGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE  209 (291)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence            3445666677789999999999874 4766766554

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=82.60  E-value=7.9  Score=34.28  Aligned_cols=31  Identities=23%  Similarity=0.262  Sum_probs=22.1

Q ss_pred             HHHHHHHHHhhhhhchhhhhcCC-CCCcccCC
Q 044153           36 LLVNIYEVGVNQLYDVEIDKINK-PDLPLASG   66 (262)
Q Consensus        36 ~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG   66 (262)
                      ++.+.+-..+||+-|+|.|+++. |.-|..-|
T Consensus       164 f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G  195 (279)
T PRK09573        164 FFSTWSREIVKDIEDIEGDLKENVITLPIKYG  195 (279)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHCCCccccHHhh
Confidence            34445566779999999999744 66676555

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=82.38  E-value=12  Score=33.69  Aligned_cols=35  Identities=20%  Similarity=0.240  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhhcC-CCCCcccCCc
Q 044153           33 VPGLLVNIYEVGVNQLYDVEIDKIN-KPDLPLASGD   67 (262)
Q Consensus        33 l~~~l~~~a~~~iNd~~D~~~D~~n-~~~RPl~sG~   67 (262)
                      +..++-+..-...||+.|+|.|+++ .|.-|+.-|+
T Consensus       182 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~  217 (297)
T PRK12871        182 VFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM  217 (297)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence            3445556667889999999999985 4666776664

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=82.26  E-value=5.1  Score=35.68  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=19.0

Q ss_pred             hhcCCChhhhHHcCC-cccceeech
Q 044153          170 VLDMPDVDGDKEHGI-QTLSIALGK  193 (262)
Q Consensus       170 ~~~~~D~e~D~~~G~-~Tlpv~~G~  193 (262)
                      +||+.|+|-|+++-. |.-|..=|+
T Consensus        66 iND~~D~eiD~~n~rt~~RPl~sG~   90 (289)
T COG0382          66 INDLADREIDRINPRTKNRPLPSGR   90 (289)
T ss_pred             HHHHhhhhccCCCCCccCCCCCCCC
Confidence            999999999999865 455666563

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=81.53  E-value=8.1  Score=34.15  Aligned_cols=31  Identities=32%  Similarity=0.455  Sum_probs=22.1

Q ss_pred             HHHHHHHHhhhhhchhhhhcC-CCCCcccCCc
Q 044153           37 LVNIYEVGVNQLYDVEIDKIN-KPDLPLASGD   67 (262)
Q Consensus        37 l~~~a~~~iNd~~D~~~D~~n-~~~RPl~sG~   67 (262)
                      +...+-...||+.|+|.|++. .|.-|+.-|+
T Consensus       165 l~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~  196 (277)
T PRK12883        165 LVNVAREIMKDIEDIEGDKAKGAKTLPIIIGK  196 (277)
T ss_pred             HHHHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence            344456678999999999984 4666765553

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00