Citrus Sinensis ID: 044158

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890--
Protein Sequence
WVDESYSDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENRSSTEASTHDNEEDDNLIDMDSFYITFTVSSVIVILGIIGVLWANPYWRHRWFYLVEILITSCYYFVVHNLIP
Secondary Structure (PSIPRED)
ccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccHHccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccEEEcccccccccccccccEEEcccccccccccccHHHcccccccEEEccccccEEEccHHHHHccccccEEEcccccccccccccccccccccEEEccccEEEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEccccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEccccccEEEccccccccccccEEEccccccccccccHHHcccccccccccccccccccccccEEcccccccccEEEEEEEEcccEEEEccccccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccHHHHcccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEcccccEEEEEEcccccccccccccccHHcccHcccEEEccccccccccccccHHHHHccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHHccccccEEEccccccccccccHHHccccccEEEEcccccccccccccHHHcccccccEEEcccccccccccHHHcccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHHccccccEEEEEccccccccccHHHcccccccEEEEEEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHHcccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHHHHcccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHHHHHHEEEccccccccccccccccccccHHHccHHHHcccccccccccHccccccEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
wvdesysdccqwqSVLCNATTSRVIAIDLLSLNIASALYlnfslftpfqqlesldlsgnniagcvenegleklsglsnlkfldlshnsfnnSVLSSLAGLSSLKNLSLAYNRLegsinieeldslsnlegldmsdneidnlvvpkdyrglrklrfldlsglrirdgskvlhsigsfpslktlYLKSNNFAKTVTTTQGLCELAHLQELYIdhndfigsLPWCLANltslrvlhvpdnqltenlsssplmhlTSIELLILsnnhfqipmslepffnysklkifhgrenqifgeiesshssltpkfqltsislsdhgdsdggtipkflyHQHHLEFVIISdvnmrgefpswllenntNLRSIILAnnslsgpfrlptrsrknIIALDISYnklqghipveigkvlpnlgfltisfnafngsipssfgdmnSLIYLdlsnnqltgeipehlamGCFNLEYLLLSNnslqgqlfskkinltklkrlnldgnhfiggipeslsncsslqglyisdndisgsiptwmgnisfldaiimpdnhlegpipsefcqlDYLEILDlsknniagrplngafskCSYLLTLDLCnnrlngnipnwMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLdlshnnfsgqippcldntslhreegyydliptyrneydivsynvgpsmgeketidfttkersytykgqplesihgldlSCNKLIGEIPSRIGELIRIHTLnlsrnnltgtipvtfsnlrQVESLDLsynnltgkipprLVELNALAVFTVAHnnlsgkipERIAQFatfdedsyegnpflcgpplpkicnenrssteasthdneeddnlidmdsfYITFTVSSVIVILGIIGVlwanpywrhRWFYLVEILITSCYYFVVHNLIP
Flexible Loop (DISEMBL)
WVDESYSDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIdnlvvpkdyrglrKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANnslsgpfrlptRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHnnfsgqippcldntslHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENRSSTEasthdneeddnLIDMDSFYITFTVSSVIVILGIIGVLWANPYWRHRWFYLVEILITSCYYFVVHNLIP
Low Complexity Region (SEG)
WVDESYSDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFnnsvlsslaglsslknlslAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYlllsnnslqgqlFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPlrlcqlqklrlldlSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENRSSTEASTHDNEEDDNLIDMDSFYITFTvssvivilgiigvlWANPYWRHRWFYLVEILITSCYYFVVHNLIP
Disordered region (IsUnstruct)
*****YSDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEI**************************GTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLP**********************LIDMDSFYITFTVSSVIVILGIIGVLWANPYWRHRWFYLVEILITSCYYFVVHNLI*
Disordered Region (DISOPRED)
WVDESYSDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGP****************************MDSFYITFTVSSVIVILGIIGVLWANPYWRHRWFYLVEILITSCYYFVVHNLIP
Disordered Region (DISEMBL)
********CCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNE************EEDDNLIDMDSFYITFTVSSVIVILGIIGVLWANPYWRHRWFYLVEILITSCYYFVVHNLIP
Disordered Region (DISPRO)
*****YSDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENRSSTEAS***NEEDDNLIDMDSFYITFTVSSVIVILGIIGVLWANPYWRHRWFYLVEILITSCYYFVVHNLIP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
WVDESYSDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENRSSTEASTHDNEEDDNLIDMDSFYITFTVSSVIVILGIIGVLWANPYWRHRWFYLVEILITSCYYFVVHNLIP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	892	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.900	0.642	0.291	3e-73
Q9C9H7	847	Receptor-like protein 12	no	no	0.827	0.871	0.298	2e-70
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.785	0.559	0.298	6e-69
Q9FL28	1173	LRR receptor-like serine/	no	no	0.827	0.629	0.303	3e-65
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.775	0.573	0.297	2e-62
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.720	0.566	0.288	3e-62
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.783	0.579	0.296	3e-62
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.565	0.440	0.329	2e-59
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.665	0.496	0.316	1e-57
Q9LHP4	1141	Receptor-like protein kin	no	no	0.659	0.515	0.314	2e-57

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  277 bits (708), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 266/914 (29%), Positives = 423/914 (46%), Gaps = 111/914 (12%)

Query: 10  CQWQSVLCNATT-SRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCV--- 65
           C W  V C+ T   RVIA++L  L +  ++      F  F  L  LDLS NN+ G +   
Sbjct: 58  CSWTGVTCDNTGLFRVIALNLTGLGLTGSIS---PWFGRFDNLIHLDLSSNNLVGPIPTA 114

Query: 66  -----------------ENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSL 108
                              E   +L  L N++ L +  N     +  +L  L +L+ L+L
Sbjct: 115 LSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLAL 174

Query: 109 AYNRLEGSINIEELDSLSNLEGLDMSDNEID-----------------------NLVVPK 145
           A  RL G I   +L  L  ++ L + DN ++                       N  +P 
Sbjct: 175 ASCRLTGPIP-SQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPA 233

Query: 146 DYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHL 205
           +   L  L  L+L+   +    ++   +G    L+ L L +N     +  +  L +L +L
Sbjct: 234 ELGRLENLEILNLANNSLT--GEIPSQLGEMSQLQYLSLMANQLQGLIPKS--LADLGNL 289

Query: 206 QELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHF- 264
           Q L +  N+  G +P    N++ L  L + +N L+ +L  S   + T++E L+LS     
Sbjct: 290 QTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLS 349

Query: 265 -QIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIP 323
            +IP+ L    +  +L + +   N + G I  +   L    +LT + L  H ++  GT+ 
Sbjct: 350 GEIPVELSKCQSLKQLDLSN---NSLAGSIPEALFELV---ELTDLYL--HNNTLEGTLS 401

Query: 324 KFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIA 383
             + +  +L+++++   N+ G+ P   +     L  + L  N  SG       +  ++  
Sbjct: 402 PSISNLTNLQWLVLYHNNLEGKLPKE-ISALRKLEVLFLYENRFSGEIPQEIGNCTSLKM 460

Query: 384 LDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 443
           +D+  N  +G IP  IG+ L  L  L +  N   G +P+S G+ + L  LDL++NQL+G 
Sbjct: 461 IDMFGNHFEGEIPPSIGR-LKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGS 519

Query: 444 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSL 503
           IP         LE L+L NNSLQG L    I+L  L R+NL  N   G I   L   SS 
Sbjct: 520 IPSSFGF-LKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTI-HPLCGSSSY 577

Query: 504 QGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG 563
               +++N     IP  +GN   LD + +  N L G IP    ++  L +LD+S N + G
Sbjct: 578 LSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTG 637

Query: 564 R-PLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQ 622
             PL      C  L  +DL NN L+G IP W+G+LSQL  L L++N F   +P  L    
Sbjct: 638 TIPLQLVL--CKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCT 695

Query: 623 KLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETID 682
           KL +L L  N+ +G IP  + N       G  +++   +N++   S ++  +MG+     
Sbjct: 696 KLLVLSLDGNSLNGSIPQEIGNL------GALNVLNLDKNQF---SGSLPQAMGK----- 741

Query: 683 FTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHT-LNLSRNNLTGTIPVT 741
                         L  ++ L LS N L GEIP  IG+L  + + L+LS NN TG IP T
Sbjct: 742 --------------LSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPST 787

Query: 742 FSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSY 801
              L ++E+LDLS+N LTG++P  + ++ +L    V+ NNL GK+ +   QF+ +  DS+
Sbjct: 788 IGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKK---QFSRWPADSF 844

Query: 802 EGNPFLCGPPLPKICNENRSSTEASTHDNEEDDNLIDMDSFYITFTVSSVIVILGIIGVL 861
            GN  LCG PL + CN  RS+ +            +   S  I   +S++  I  +I V+
Sbjct: 845 LGNTGLCGSPLSR-CNRVRSNNKQQG---------LSARSVVIISAISALTAIGLMILVI 894

Query: 862 WANPYWRHRWFYLV 875
                 RH +F  V
Sbjct: 895 ALFFKQRHDFFKKV 908

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  268 bits (684), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 265/888 (29%), Positives = 406/888 (45%), Gaps = 150/888 (16%)

Query: 7   SDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVE 66
           +DCC W  V CN  + +VI++D+ +  + + L  N SLF   Q L  LDL+  N+ G + 
Sbjct: 69  TDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFK-LQYLRHLDLTNCNLYGEIP 127

Query: 67  NEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLS 126
           +     L  LS+L  ++L  N F   + +S+  L+ L++L LA N L G I    L +LS
Sbjct: 128 S----SLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIP-SSLGNLS 182

Query: 127 NLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKS 186
            L  L++  N                           R   K+  SIG    L+ L L S
Sbjct: 183 RLVNLELFSN---------------------------RLVGKIPDSIGDLKQLRNLSLAS 215

Query: 187 NNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSS 246
           NN    + ++ G   L++L  L + HN  +G +P  + NL  LRV+   +N L+ N    
Sbjct: 216 NNLIGEIPSSLG--NLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGN---- 269

Query: 247 PLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQL 306
                              IP+S   F N +KL IF    N                   
Sbjct: 270 -------------------IPIS---FANLTKLSIFVLSSNNF----------------- 290

Query: 307 TSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNS 366
                         T P  +   H+LE+  +S  +  G FP  LL    +L SI L  N 
Sbjct: 291 ------------TSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLI-PSLESIYLQENQ 337

Query: 367 LSGPFRLP-TRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFG 425
            +GP     T S   +  L +  N+L G IP  I ++L NL  L IS N F G+IP +  
Sbjct: 338 FTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLL-NLEELDISHNNFTGAIPPTIS 396

Query: 426 DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTK----LKR 481
            + +L++LDLS N L GE+P  L    + L  ++LS+NS     FS   N ++    ++ 
Sbjct: 397 KLVNLLHLDLSKNNLEGEVPACL----WRLNTMVLSHNS-----FSSFENTSQEEALIEE 447

Query: 482 LNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNIS-FLDAIIMPDNHLEGP 540
           L+L+ N F G IP  +   SSL  L +S+N  SGSIP+ + N S  +  + + DN+  G 
Sbjct: 448 LDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGT 507

Query: 541 IPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQL 600
           +P  F +   L  LD+S N + G+    +   C  L  +++ +N++    P+W+  L  L
Sbjct: 508 LPDIFSKATELVSLDVSHNQLEGK-FPKSLINCKALELVNVESNKIKDIFPSWLESLPSL 566

Query: 601 RYLILANNNFEGEVPLRLCQL--QKLRLLDLSHNNFSGQIPPCL-----DNTSLHRE--- 650
             L L +N F G +  R   +  Q LR++D+SHNNFSG +PP       D T+L  E   
Sbjct: 567 HVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQ 626

Query: 651 --EGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCN 708
               ++    +Y +E ++V+  V  S  E+   DF                   +D S N
Sbjct: 627 YMTEFWRYADSYYHEMEMVNKGVDMSF-ERIRRDF-----------------RAIDFSGN 668

Query: 709 KLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVE 768
           K+ G IP  +G L  +  LNLS N  T  IP   +NL ++E+LD+S N L+G+IP  L  
Sbjct: 669 KINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAA 728

Query: 769 LNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENRS---STEA 825
           L+ L+    +HN L G +P R  QF      S+  NP L G  L  IC +  +   +++ 
Sbjct: 729 LSFLSYMNFSHNLLQGPVP-RGTQFQRQKCSSFLDNPGLYG--LEDICRDTGALNPTSQL 785

Query: 826 STHDNEEDDNLIDMDSFYITFTVSSVIVILG-IIGVLWANPYWRHRWF 872
               +E ++N+ +  +  I +      V+ G +IG  + +    H WF
Sbjct: 786 PEDLSEAEENMFNWVAAAIAYGPG---VLCGLVIGHFYTSH--NHEWF 828

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  263 bits (671), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 235/787 (29%), Positives = 377/787 (47%), Gaps = 86/787 (10%)

Query: 45  FTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLK 104
           F     L+ L L+   + G + +    +   L  L+ L L  N     + + +   +SL 
Sbjct: 164 FGNLVNLQMLALASCRLTGLIPS----RFGRLVQLQTLILQDNELEGPIPAEIGNCTSLA 219

Query: 105 NLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIR 164
             + A+NRL GS+   EL+ L NL+ L++ DN      +P     L  +++L+L G +++
Sbjct: 220 LFAAAFNRLNGSLP-AELNRLKNLQTLNLGDNSFSG-EIPSQLGDLVSIQYLNLIGNQLQ 277

Query: 165 DGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCL- 223
               +   +    +L+TL L SNN    +   +    +  L+ L +  N   GSLP  + 
Sbjct: 278 --GLIPKRLTELANLQTLDLSSNNLTGVIH--EEFWRMNQLEFLVLAKNRLSGSLPKTIC 333

Query: 224 ANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHF--QIPMSLEPFFNYSKLKI 281
           +N TSL+ L + + QL+  + +  + +  S++LL LSNN    QIP SL   F   +L  
Sbjct: 334 SNNTSLKQLFLSETQLSGEIPAE-ISNCQSLKLLDLSNNTLTGQIPDSL---FQLVELTN 389

Query: 282 FHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVN 341
            +   N + G + SS S+LT                    + +F  + ++LE  +  ++ 
Sbjct: 390 LYLNNNSLEGTLSSSISNLT-------------------NLQEFTLYHNNLEGKVPKEIG 430

Query: 342 MRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGK 401
             G+           L  + L  N  SG   +   +   +  +D   N+L G IP  IG+
Sbjct: 431 FLGK-----------LEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGR 479

Query: 402 VLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS 461
            L +L  L +  N   G+IP+S G+ + +  +DL++NQL+G IP         LE  ++ 
Sbjct: 480 -LKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGF-LTALELFMIY 537

Query: 462 NNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWM 521
           NNSLQG L    INL  L R+N   N F G I   L   SS     +++N   G IP  +
Sbjct: 538 NNSLQGNLPDSLINLKNLTRINFSSNKFNGSI-SPLCGSSSYLSFDVTENGFEGDIPLEL 596

Query: 522 GNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR-PLNGAFSKCSYLLTLD 580
           G  + LD + +  N   G IP  F ++  L +LD+S+N+++G  P+      C  L  +D
Sbjct: 597 GKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVE--LGLCKKLTHID 654

Query: 581 LCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPP 640
           L NN L+G IP W+G+L  L  L L++N F G +P  +  L  +  L L  N+ +G IP 
Sbjct: 655 LNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIP- 713

Query: 641 CLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESI 700
                   +E G    +     E + +S  +  ++G+                   L  +
Sbjct: 714 --------QEIGNLQALNALNLEENQLSGPLPSTIGK-------------------LSKL 746

Query: 701 HGLDLSCNKLIGEIPSRIGELIRIHT-LNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLT 759
             L LS N L GEIP  IG+L  + + L+LS NN TG IP T S L ++ESLDLS+N L 
Sbjct: 747 FELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLV 806

Query: 760 GKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNEN 819
           G++P ++ ++ +L    +++NNL GK+ +   QF+ +  D++ GN  LCG PL   CN  
Sbjct: 807 GEVPGQIGDMKSLGYLNLSYNNLEGKLKK---QFSRWQADAFVGNAGLCGSPLSH-CNRA 862

Query: 820 RSSTEAS 826
            S  + S
Sbjct: 863 GSKNQRS 869

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  250 bits (639), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 249/821 (30%), Positives = 370/821 (45%), Gaps = 83/821 (10%)

Query: 10  CQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEG 69
           C W  + C++T   V+++ LL   +   L    +  T    L+ LDL+ N+  G +  E 
Sbjct: 61  CNWTGITCDST-GHVVSVSLLEKQLEGVLSPAIANLT---YLQVLDLTSNSFTGKIPAE- 115

Query: 70  LEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLE 129
              +  L+ L  L L  N F+ S+ S +  L ++  L L  N L G +  EE+   S+L 
Sbjct: 116 ---IGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVP-EEICKTSSLV 171

Query: 130 GLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 189
            +    N +    +P+    L  L+    +G  +     V  SIG+  +L  L L  N  
Sbjct: 172 LIGFDYNNLTG-KIPECLGDLVHLQMFVAAGNHLTGSIPV--SIGTLANLTDLDLSGNQL 228

Query: 190 AKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLM 249
              +    G   L +LQ L +  N   G +P  + N +SL  L + DNQLT         
Sbjct: 229 TGKIPRDFG--NLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTG-------- 278

Query: 250 HLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSI 309
                          +IP  L        L+I+   +N++   I SS   LT   QLT +
Sbjct: 279 ---------------KIPAELGNLVQLQALRIY---KNKLTSSIPSSLFRLT---QLTHL 317

Query: 310 SLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSG 369
            LS++     G I + +     LE + +   N  GEFP  +  N  NL  + +  N++SG
Sbjct: 318 GLSENHLV--GPISEEIGFLESLEVLTLHSNNFTGEFPQSI-TNLRNLTVLTVGFNNISG 374

Query: 370 PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNS 429
                     N+  L    N L G IP  I      L  L +S N   G IP  FG MN 
Sbjct: 375 ELPADLGLLTNLRNLSAHDNLLTGPIPSSISNC-TGLKLLDLSHNQMTGEIPRGFGRMN- 432

Query: 430 LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHF 489
           L ++ +  N  TGEIP+ +   C NLE L +++N+L G L      L KL+ L +  N  
Sbjct: 433 LTFISIGRNHFTGEIPDDI-FNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSL 491

Query: 490 IGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLD 549
            G IP  + N   L  LY+  N  +G IP  M N++ L  + M  N LEGPIP E   + 
Sbjct: 492 TGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMK 551

Query: 550 YLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNN 609
            L +LDLS N  +G+ +   FSK   L  L L  N+ NG+IP  +  LS L    +++N 
Sbjct: 552 LLSVLDLSNNKFSGQ-IPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNL 610

Query: 610 FEGEVPLRL-CQLQKLRL-LDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIV 667
             G +P  L   L+ ++L L+ S+N  +G IP         +E G  +++       ++ 
Sbjct: 611 LTGTIPGELLASLKNMQLYLNFSNNLLTGTIP---------KELGKLEMVQEIDLSNNLF 661

Query: 668 SYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGE-LIRIHT 726
           S ++  S+                   Q  +++  LD S N L G IP  + + +  I +
Sbjct: 662 SGSIPRSL-------------------QACKNVFTLDFSQNNLSGHIPDEVFQGMDMIIS 702

Query: 727 LNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKI 786
           LNLSRN+ +G IP +F N+  + SLDLS NNLTG+IP  L  L+ L    +A NNL G +
Sbjct: 703 LNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHV 762

Query: 787 PERIAQFATFDEDSYEGNPFLCGPPLP-KICNENRSSTEAS 826
           PE    F   +     GN  LCG   P K C   + S+  S
Sbjct: 763 PES-GVFKNINASDLMGNTDLCGSKKPLKPCTIKQKSSHFS 802

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  241 bits (615), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 252/847 (29%), Positives = 369/847 (43%), Gaps = 155/847 (18%)

Query: 10  CQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEG 69
           C +  V C    SRV +IDL +  ++    L  S   P   LESL L   N++G +    
Sbjct: 71  CSFTGVSCK--NSRVSSIDLSNTFLSVDFSLVTSYLLPLSNLESLVLKNANLSGSL---- 124

Query: 70  LEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI-NIEELDSLSNL 128
                                 S   S  G++ L ++ LA N + G I +I      SNL
Sbjct: 125 ---------------------TSAAKSQCGVT-LDSIDLAENTISGPISDISSFGVCSNL 162

Query: 129 EGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNN 188
           + L++S N                  FLD  G  +                    LK+  
Sbjct: 163 KSLNLSKN------------------FLDPPGKEM--------------------LKAAT 184

Query: 189 FAKTVTTTQGLCELAHLQELYIDHNDFIGS--LPWCLA-NLTSLRVLHVPDNQLTENLSS 245
           F+              LQ L + +N+  G    PW  +     L    +  N+L     S
Sbjct: 185 FS--------------LQVLDLSYNNISGFNLFPWVSSMGFVELEFFSLKGNKLA---GS 227

Query: 246 SPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQ 305
            P +   ++  L LS N+F        F + S L+      N+ +G+I SS SS     +
Sbjct: 228 IPELDFKNLSYLDLSANNFST--VFPSFKDCSNLQHLDLSSNKFYGDIGSSLSSCG---K 282

Query: 306 LTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANN 365
           L+ ++L++  +   G +PK       L+++ +   + +G +P+ L +    +  + L+ N
Sbjct: 283 LSFLNLTN--NQFVGLVPKL--PSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYN 338

Query: 366 SLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFG 425
           + SG          ++  +DISYN   G +PV+    L N+  + +SFN F G +P SF 
Sbjct: 339 NFSGMVPESLGECSSLELVDISYNNFSGKLPVDTLSKLSNIKTMVLSFNKFVGGLPDSFS 398

Query: 426 DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLD 485
           ++  L  LD+S+N LTG IP  +                        K  +  LK L L 
Sbjct: 399 NLLKLETLDMSSNNLTGVIPSGIC-----------------------KDPMNNLKVLYLQ 435

Query: 486 GNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEF 545
            N F G IP+SLSNCS L  L +S N ++GSIP+ +G++S L  +I+  N L G IP E 
Sbjct: 436 NNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQEL 495

Query: 546 CQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLIL 605
             L  LE L L  N++ G P+  + S C+ L  + L NN+L+G IP  +GRLS L  L L
Sbjct: 496 MYLQALENLILDFNDLTG-PIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKL 554

Query: 606 ANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCL--------------------DNT 645
            NN+  G +P  L   Q L  LDL+ N  +G IPP L                     N 
Sbjct: 555 GNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYIKND 614

Query: 646 SLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHG--- 702
                 G  +L+     E+  +       +  +   +FT   R  T   QP  + +G   
Sbjct: 615 GSKECHGAGNLL-----EFGGIRQEQLDRISTRHPCNFTRVYRGIT---QPTFNHNGSMI 666

Query: 703 -LDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGK 761
            LDLS NKL G IP  +G +  +  LNL  N+L+G IP     L+ V  LDLSYN   G 
Sbjct: 667 FLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGT 726

Query: 762 IPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENRS 821
           IP  L  L  L    +++NNLSG IPE  A F TF +  +  N  LCG PLP  C+    
Sbjct: 727 IPNSLTSLTLLGEIDLSNNNLSGMIPES-APFDTFPDYRFANNS-LCGYPLPIPCSSGPK 784

Query: 822 STEASTH 828
           S +A+ H
Sbjct: 785 S-DANQH 790

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  240 bits (613), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 214/741 (28%), Positives = 342/741 (46%), Gaps = 98/741 (13%)

Query: 142 VVPKDYRGL--RKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGL 199
             P D+RG+     R  ++   R++   ++   I     L+ L L+SN+F  T+ T+   
Sbjct: 55  AAPCDWRGVGCTNHRVTEIRLPRLQLSGRISDRISGLRMLRKLSLRSNSFNGTIPTSLAY 114

Query: 200 CELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLIL 259
           C    L  +++ +N   G LP  + NLTSL V +V  N+L+  +   P+   +S++ L +
Sbjct: 115 C--TRLLSVFLQYNSLSGKLPPAMRNLTSLEVFNVAGNRLSGEI---PVGLPSSLQFLDI 169

Query: 260 SNNHF--QIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTP------KFQLTS--- 308
           S+N F  QIP  L        L + +   NQ+ GEI +S  +L         F L     
Sbjct: 170 SSNTFSGQIPSGLANLTQLQLLNLSY---NQLTGEIPASLGNLQSLQYLWLDFNLLQGTL 226

Query: 309 ----------ISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLR 358
                     + LS   +  GG IP        LE + +S+ N  G  P + L  NT+L 
Sbjct: 227 PSAISNCSSLVHLSASENEIGGVIPAAYGALPKLEVLSLSNNNFSGTVP-FSLFCNTSLT 285

Query: 359 SIILANNSLSGPFRLPTRS--RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAF 416
            + L  N+ S   R  T +  R  +  LD+  N++ G  P+ +  +L +L  L +S N F
Sbjct: 286 IVQLGFNAFSDIVRPETTANCRTGLQVLDLQENRISGRFPLWLTNIL-SLKNLDVSGNLF 344

Query: 417 NGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINL 476
           +G IP   G++  L  L L+NN LTGEIP  +   C +L+ L    NSL+GQ+      +
Sbjct: 345 SGEIPPDIGNLKRLEELKLANNSLTGEIPVEIKQ-CGSLDVLDFEGNSLKGQIPEFLGYM 403

Query: 477 TKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNH 536
             LK L+L  N F G +P S+ N   L+ L + +N+++GS P  +  ++ L  + +  N 
Sbjct: 404 KALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNR 463

Query: 537 LEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGR 596
             G +P     L  L  L+LS N  +G  +  +      L  LDL    ++G +P  +  
Sbjct: 464 FSGAVPVSISNLSNLSFLNLSGNGFSGE-IPASVGNLFKLTALDLSKQNMSGEVPVELSG 522

Query: 597 LSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDL 656
           L  ++ + L  NNF G VP     L  LR ++LS N+FSG+IP            G+  L
Sbjct: 523 LPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTF---------GFLRL 573

Query: 657 IPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPS 716
           + +     + +S ++ P +G    ++                    L+L  N+L+G IP+
Sbjct: 574 LVSLSLSDNHISGSIPPEIGNCSALEV-------------------LELRSNRLMGHIPA 614

Query: 717 RIGELIRIHTLNLSRNNL------------------------TGTIPVTFSNLRQVESLD 752
            +  L R+  L+L +NNL                        +G IP +FS L  +  +D
Sbjct: 615 DLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMD 674

Query: 753 LSYNNLTGKIPPRLVELNA-LAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPP 811
           LS NNLTG+IP  L  +++ L  F V+ NNL G+IP  +      +   + GN  LCG P
Sbjct: 675 LSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRIN-NTSEFSGNTELCGKP 733

Query: 812 LPKICNENRSSTEASTHDNEE 832
           L + C       E+ST + ++
Sbjct: 734 LNRRC-------ESSTAEGKK 747

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  240 bits (613), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 252/850 (29%), Positives = 368/850 (43%), Gaps = 151/850 (17%)

Query: 5   SYSDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGC 64
           S +D C +  V C    SRV +IDL +  ++    L  S   P   LESL L   N++G 
Sbjct: 66  SSTDPCSFTGVSCK--NSRVSSIDLSNTFLSVDFSLVTSYLLPLSNLESLVLKNANLSGS 123

Query: 65  VENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI-NIEELD 123
           +                          S   S  G++ L ++ LA N + G I +I    
Sbjct: 124 L-------------------------TSAAKSQCGVT-LDSIDLAENTISGPISDISSFG 157

Query: 124 SLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLY 183
             SNL+ L++S N                  FLD  G  +  G+          SL+ L 
Sbjct: 158 VCSNLKSLNLSKN------------------FLDPPGKEMLKGATF--------SLQVLD 191

Query: 184 LKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLA-NLTSLRVLHVPDNQLTEN 242
           L  NN +                             PW  +     L    +  N+L   
Sbjct: 192 LSYNNISG------------------------FNLFPWVSSMGFVELEFFSIKGNKLA-- 225

Query: 243 LSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTP 302
             S P +   ++  L LS N+F        F + S L+      N+ +G+I SS SS   
Sbjct: 226 -GSIPELDFKNLSYLDLSANNFST--VFPSFKDCSNLQHLDLSSNKFYGDIGSSLSSCG- 281

Query: 303 KFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIIL 362
             +L+ ++L++  +   G +PK       L+++ +   + +G +P+ L +    +  + L
Sbjct: 282 --KLSFLNLTN--NQFVGLVPKL--PSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDL 335

Query: 363 ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPS 422
           + N+ SG          ++  +DIS N   G +PV+    L N+  + +SFN F G +P 
Sbjct: 336 SYNNFSGMVPESLGECSSLELVDISNNNFSGKLPVDTLLKLSNIKTMVLSFNKFVGGLPD 395

Query: 423 SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRL 482
           SF ++  L  LD+S+N LTG IP  +                        K  +  LK L
Sbjct: 396 SFSNLPKLETLDMSSNNLTGIIPSGIC-----------------------KDPMNNLKVL 432

Query: 483 NLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIP 542
            L  N F G IP+SLSNCS L  L +S N ++GSIP+ +G++S L  +I+  N L G IP
Sbjct: 433 YLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIP 492

Query: 543 SEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRY 602
            E   L  LE L L  N++ G P+  + S C+ L  + L NN+L+G IP  +GRLS L  
Sbjct: 493 QELMYLQALENLILDFNDLTG-PIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAI 551

Query: 603 LILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCL-------------------- 642
           L L NN+  G +P  L   Q L  LDL+ N  +G IPP L                    
Sbjct: 552 LKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYI 611

Query: 643 DNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHG 702
            N       G  +L+     E+  +       +  +   +FT   R  T   QP  + +G
Sbjct: 612 KNDGSKECHGAGNLL-----EFGGIRQEQLDRISTRHPCNFTRVYRGIT---QPTFNHNG 663

Query: 703 ----LDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNL 758
               LDLS NKL G IP  +G +  +  LNL  N+L+G IP     L+ V  LDLSYN  
Sbjct: 664 SMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRF 723

Query: 759 TGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNE 818
            G IP  L  L  L    +++NNLSG IPE  A F TF +  +  N  LCG PLP  C+ 
Sbjct: 724 NGTIPNSLTSLTLLGEIDLSNNNLSGMIPES-APFDTFPDYRFANNS-LCGYPLPLPCSS 781

Query: 819 NRSSTEASTH 828
              S +A+ H
Sbjct: 782 GPKS-DANQH 790

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  231 bits (589), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 185/561 (32%), Positives = 269/561 (47%), Gaps = 57/561 (10%)

Query: 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLT 410
           L N TNL+S+ L+ N+  G         K + +LD+S+N+L G IP EIG    +L  L 
Sbjct: 224 LINCTNLKSLNLSYNNFDGQIPKSFGELKLLQSLDLSHNRLTGWIPPEIGDTCRSLQNLR 283

Query: 411 ISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLF 470
           +S+N F G IP S    + L  LDLSNN ++G  P  +     +L+ LLLSNN + G  F
Sbjct: 284 LSYNNFTGVIPESLSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQILLLSNNLISGD-F 342

Query: 471 SKKINLTK--------------------------LKRLNLDGNHFIGGIPESLSNCSSLQ 504
              I+  K                          L+ L L  N   G IP ++S CS L+
Sbjct: 343 PTSISACKSLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELR 402

Query: 505 GLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR 564
            + +S N ++G+IP  +GN+  L+  I   N++ G IP E  +L  L+ L L+ N + G 
Sbjct: 403 TIDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGE 462

Query: 565 PLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKL 624
            +   F  CS +  +   +NRL G +P   G LS+L  L L NNNF GE+P  L +   L
Sbjct: 463 -IPPEFFNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPELGKCTTL 521

Query: 625 RLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPS-MGEKETIDF 683
             LDL+ N+ +G+IPP      L R+ G   L             NVG S  G    ++F
Sbjct: 522 VWLDLNTNHLTGEIPP-----RLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEF 576

Query: 684 T--TKER------------SYTYKGQPL------ESIHGLDLSCNKLIGEIPSRIGELIR 723
           +    ER            +  Y G  L      ++I  LDLS N+L G+IP  IGE+I 
Sbjct: 577 SGIRPERLLQIPSLKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIA 636

Query: 724 IHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
           +  L LS N L+G IP T   L+ +   D S N L G+IP     L+ L    +++N L+
Sbjct: 637 LQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELT 696

Query: 784 GKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENRSSTEASTHDNEEDDNLIDMDSFY 843
           G IP+R  Q +T     Y  NP LCG PLP+ C    +   A T + +   +     S+ 
Sbjct: 697 GPIPQR-GQLSTLPATQYANNPGLCGVPLPE-CKNGNNQLPAGTEEGKRAKHGTRAASWA 754

Query: 844 ITFTVSSVIVILGI-IGVLWA 863
            +  +  +I    + I ++WA
Sbjct: 755 NSIVLGVLISAASVCILIVWA 775

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  225 bits (574), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 211/666 (31%), Positives = 306/666 (45%), Gaps = 72/666 (10%)

Query: 203 AHLQELYIDHNDFIGSLPW--CLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILS 260
           A L  L +  N   G +     L + + L+ L+V  N L      S  + L S+E+L LS
Sbjct: 122 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 181

Query: 261 NNHFQIPMSLEPFFN--YSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSD 318
            N       +    +    +LK      N+I G+++ S         L  + +S +  S 
Sbjct: 182 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC-----VNLEFLDVSSNNFST 236

Query: 319 GGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSR 378
           G  IP FL     L+ + IS   + G+F S  +   T L+ + +++N   GP  +P    
Sbjct: 237 G--IP-FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPL 290

Query: 379 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFG------------- 425
           K++  L ++ NK  G IP  +      L  L +S N F G++P  FG             
Sbjct: 291 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 350

Query: 426 ------------DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKK 473
                        M  L  LDLS N+ +GE+PE L     +L  L LS+N+  G +    
Sbjct: 351 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 410

Query: 474 INLTK--LKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAII 531
               K  L+ L L  N F G IP +LSNCS L  L++S N +SG+IP+ +G++S L  + 
Sbjct: 411 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 470

Query: 532 MPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP 591
           +  N LEG IP E   +  LE L L  N++ G   +G  S C+ L  + L NNRL G IP
Sbjct: 471 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIP 529

Query: 592 NWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREE 651
            W+GRL  L  L L+NN+F G +P  L   + L  LDL+ N F+G IP      ++ ++ 
Sbjct: 530 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP-----AAMFKQS 584

Query: 652 G--YYDLIPTYRNEYDIVSYNVGPSMGEKETIDFT-----------------TKERSYTY 692
           G    + I   R  Y           G    ++F                     R Y  
Sbjct: 585 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 644

Query: 693 KGQPLESIHG----LDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQV 748
              P    +G    LD+S N L G IP  IG +  +  LNL  N+++G+IP    +LR +
Sbjct: 645 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 704

Query: 749 ESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLC 808
             LDLS N L G+IP  +  L  L    +++NNLSG IPE + QF TF    +  NP LC
Sbjct: 705 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLC 763

Query: 809 GPPLPK 814
           G PLP+
Sbjct: 764 GYPLPR 769

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  224 bits (572), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 201/639 (31%), Positives = 307/639 (48%), Gaps = 51/639 (7%)

Query: 175 SFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHV 234
           +F SL+ L +   N   T+  + G C    L+ L +  N  +G +PW L+ L +L  L +
Sbjct: 103 AFRSLQKLTISGANLTGTLPESLGDC--LGLKVLDLSSNGLVGDIPWSLSKLRNLETLIL 160

Query: 235 PDNQLTENLSSSPLMHLTSIELLILSNNHF--QIPMSLEPFFNYSKLKIFHGRENQIFGE 292
             NQLT  +    +   + ++ LIL +N     IP  L        ++I  G   +I G+
Sbjct: 161 NSNQLTGKIPPD-ISKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIRI--GGNKEISGQ 217

Query: 293 IESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLE 352
           I S     +    LT + L++   S  G +P  L     LE + I    + GE PS L  
Sbjct: 218 IPSEIGDCS---NLTVLGLAETSVS--GNLPSSLGKLKKLETLSIYTTMISGEIPSDL-G 271

Query: 353 NNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTIS 412
           N + L  + L  NSLSG           +  L +  N L G IP EIG    NL  + +S
Sbjct: 272 NCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNC-SNLKMIDLS 330

Query: 413 FNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSK 472
            N  +GSIPSS G ++ L    +S+N+ +G IP  ++  C +L  L L  N + G + S+
Sbjct: 331 LNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTIS-NCSSLVQLQLDKNQISGLIPSE 389

Query: 473 KINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIM 532
              LTKL       N   G IP  L++C+ LQ L +S N ++G+IP+ +  +  L  +++
Sbjct: 390 LGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLL 449

Query: 533 PDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNG--AFSKCSYLLTLDLCNNRLNGNI 590
             N L G IP E      L  L L  N I G   +G  +  K ++L   D  +NRL+G +
Sbjct: 450 ISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFL---DFSSNRLHGKV 506

Query: 591 PNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHRE 650
           P+ +G  S+L+ + L+NN+ EG +P  +  L  L++LD+S N FSG+IP      SL R 
Sbjct: 507 PDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIP-----ASLGRL 561

Query: 651 EGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKL 710
                LI +     ++ S ++  S+G    +                     LDL  N+L
Sbjct: 562 VSLNKLILSK----NLFSGSIPTSLGMCSGLQL-------------------LDLGSNEL 598

Query: 711 IGEIPSRIGELIRIH-TLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVEL 769
            GEIPS +G++  +   LNLS N LTG IP   ++L ++  LDLS+N L G + P L  +
Sbjct: 599 SGEIPSELGDIENLEIALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEGDLAP-LANI 657

Query: 770 NALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLC 808
             L    +++N+ SG +P+    F        EGN  LC
Sbjct: 658 ENLVSLNISYNSFSGYLPDN-KLFRQLSPQDLEGNKKLC 695

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	892
255581263	912	serine-threonine protein kinase, plant-t	0.931	0.911	0.485	0.0
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.979	0.596	0.442	0.0
224073436	1014	predicted protein [Populus trichocarpa]	0.980	0.862	0.422	1e-180
224134891	953	predicted protein [Populus trichocarpa]	0.950	0.889	0.417	1e-177
224142481	781	predicted protein [Populus trichocarpa]	0.839	0.959	0.48	1e-176
224123984	1016	predicted protein [Populus trichocarpa]	0.986	0.866	0.415	1e-173
224112245	876	predicted protein [Populus trichocarpa]	0.892	0.908	0.422	1e-173
359482745	1026	PREDICTED: leucine-rich repeat receptor	0.991	0.861	0.401	1e-172
224073422	969	predicted protein [Populus trichocarpa]	0.960	0.884	0.409	1e-171
359483099	1231	PREDICTED: probable LRR receptor-like se	0.974	0.705	0.395	1e-170

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/900 (48%), Positives = 573/900 (63%), Gaps = 69/900 (7%)

Query: 8   DCCQWQSVLCNATTSRVIAIDLLSLNIASA---LYLNFSLFTPFQQLESLDLSGNNIAGC 64
           DCCQW+ V C++ T RV  +DL +     +    YLN SLF PF++L+SL L GN+I  C
Sbjct: 55  DCCQWERVECSSITGRVTRLDLDTTRAYQSSRNWYLNASLFLPFEELKSLSLKGNSIVDC 114

Query: 65  VENEGLEKLSG-LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELD 123
           VENEG E+LS  LS+L+ LDLS+NSFN S+LSSL+  SSLK+L+L +N  E  I  ++L 
Sbjct: 115 VENEGFERLSTRLSSLEVLDLSYNSFNESILSSLSEFSSLKSLNLGFNPFEVPIQAQDLP 174

Query: 124 SLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLY 183
           +  NLE L +   E++N                             L ++G   SLK L 
Sbjct: 175 NFENLEELYLDKIELEN---------------------------SFLQTVGVMTSLKVLS 207

Query: 184 LKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENL 243
           L        +   QGLCEL HL+ L +  N+F G LPWCL+NLTSL++L +  NQ   ++
Sbjct: 208 LSGCGLTGALPNVQGLCELIHLRVLDVSSNEFHGILPWCLSNLTSLQLLDLSSNQFVGDI 267

Query: 244 SSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPK 303
           S+SPL  L S+  L +SNNHFQ+P SL PFFN+S LK   G+ N I+ E E  HS+  P+
Sbjct: 268 SNSPLKILKSLVDLDVSNNHFQVPFSLGPFFNHSNLKHIRGQNNAIYLEAEL-HSA--PR 324

Query: 304 FQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILA 363
           FQL SI  S +G    GT P FLYHQ++L+FV +S ++++GEFP+WLL NNT L  + L 
Sbjct: 325 FQLISIIFSGYGIC--GTFPNFLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLV 382

Query: 364 NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSS 423
           NNSLSG  +LP     N++ALDIS N +  HIP+EIG  LP L  L +S N F+GSIPSS
Sbjct: 383 NNSLSGHLQLPLHPHVNLLALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSS 442

Query: 424 FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLN 483
           FG+MNSL  LDLSNNQL+G IPEHLA GCF+L  L+LSNNSLQGQ+FSK+ NLT L  L 
Sbjct: 443 FGNMNSLRILDLSNNQLSGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLE 502

Query: 484 LDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPS 543
           LD NHF G IP+SLS  S+L  + +SDN +SG IP W+GN+S+L  +I+ +N L+GPIP 
Sbjct: 503 LDKNHFSGRIPKSLSK-SALSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPV 561

Query: 544 EFCQLDYLEILDLSKNNIAG----------------------RPLNGAFSKCSYLLTLDL 581
           EFCQL YLE+LDL+ N+++G                       P   AFS   +L+TLDL
Sbjct: 562 EFCQLHYLEVLDLANNSVSGILPSCLSPSSIIHVHLSQNMIEGPWTNAFSGSHFLVTLDL 621

Query: 582 CNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPC 641
            +NR+ G IP  +G ++ LR L L +N F+GE+P ++C L +L L+ L+ NN SG IP C
Sbjct: 622 SSNRITGRIPTLIGGINALRILNLKSNRFDGEIPAQICGLYQLSLIVLADNNLSGSIPSC 681

Query: 642 LDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIH 701
           L    L + +    L P      + ++    P       + FTTK RSY+Y+G+ L  I 
Sbjct: 682 LQ---LDQSD---SLAPDVPPVPNPLNPYYLP----VRPMYFTTKRRSYSYQGKILSYIS 731

Query: 702 GLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGK 761
           G+D SCNKL GEIP  +G    I++LNLS N  TG IP TFSNL+Q+ESLDLSYNNL G 
Sbjct: 732 GIDFSCNKLTGEIPPEMGNHSAIYSLNLSYNRFTGPIPSTFSNLKQIESLDLSYNNLNGD 791

Query: 762 IPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENRS 821
           IP +L+EL  L+ F+VAHNNL GK P+R  QFATF+  SYEGNP LCG PLPK C E  +
Sbjct: 792 IPSQLLELKFLSYFSVAHNNLFGKTPKRTGQFATFEVSSYEGNPNLCGLPLPKSCTEREA 851

Query: 822 STEASTHDNEEDDNLIDMDSFYITFTVSSVIVILGIIGVLWANPYWRHRWFYLVEILITS 881
           S+       +E+ N +DM++FY +F VS   VI+G+  VL+ NP WR  WF  V+I I+S
Sbjct: 852 SSAPRASAMDEESNFLDMNTFYGSFIVSYTFVIIGMFLVLYINPQWRRAWFDFVDICISS 911

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/978 (44%), Positives = 571/978 (58%), Gaps = 104/978 (10%)

Query: 1    WVDESYSDCCQWQSVLCNATTSRVIAIDLLSLNIASA--LYLNFSLFTPFQQLESLDLSG 58
            W DE  SDCC W+ V C+ TT RV+ + L +   +S   LYLN SLF PF +L+ L+LS 
Sbjct: 494  WEDEE-SDCCGWERVECSNTTGRVLKLFLNNTRESSQEDLYLNASLFIPFVELKILNLST 552

Query: 59   NNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN 118
            N +    +++G E+   L+NL+ LDLS+N+ + S+L+SL  LSSLK+LSL  N LEGSI 
Sbjct: 553  NMLVTLGDDDGSERPFKLNNLELLDLSNNTLDISILASLTELSSLKSLSLGTNILEGSI- 611

Query: 119  IEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFL---------------------- 156
             +EL +L NLE LD+S N++++ +     + LRKLR L                      
Sbjct: 612  -QELAALHNLEELDLSKNDLESFITTTGLKSLRKLRVLHLETNDFNISTLKSLGRLSLLK 670

Query: 157  -------------------DLSGLRIRD------GSKVLHSIGSFPSLKTLYLKSNNFAK 191
                               +L  L + D       S +L  +    SLK L L+SN    
Sbjct: 671  ELYLGGNKLEGSVTLRELNNLRNLEVLDLSSTNISSSILQIVEVMTSLKALSLRSNGING 730

Query: 192  TVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHL 251
            + T  QGLC+L +LQEL +  N F GS+  CL NLTSLR L +  N+ + NL SS    L
Sbjct: 731  SQTALQGLCKLKNLQELDLSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDSSLFAGL 790

Query: 252  TSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGE----IESSHSSLTPKFQLT 307
              +E L LS+N FQ    +  F  +SKL++     + I G     +ES   +  P FQL 
Sbjct: 791  MKLEFLSLSHNVFQTFPPISSFAKHSKLEVL----DLICGNNTLLLESEDQTWVPSFQLK 846

Query: 308  SISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSL 367
               LS       G+IP FL++QH L  V +S+ ++  +FP+WL++NNT L  + L NNSL
Sbjct: 847  VFRLSS-CILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNSL 905

Query: 368  SGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDM 427
            +G F LP R      A+DIS N LQG +P  I   LPNL FL +S N+F GSIPS FG M
Sbjct: 906  TGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSIPS-FGGM 964

Query: 428  NSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGN 487
              L++LDLSNN  TG IPE LAMGC +LEYL+LS N L GQ+F +  NL  L+ L LD N
Sbjct: 965  RKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDDN 1024

Query: 488  HFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQ 547
            HF G IP+ LSN S L+ LY+S N ISG +P W+GN+S L A++MP+N LEGPIP EFC 
Sbjct: 1025 HFSGKIPD-LSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCS 1083

Query: 548  LDYLEILDLSKNNIAGR----------------------PLNGAFSKCSYLLTLDLCNNR 585
            LD LE+LDLS NN++G                       PL  AF++   L TLD+ NN 
Sbjct: 1084 LDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPLTKAFTRSMDLATLDIRNNN 1143

Query: 586  LNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNT 645
            L+G IP+W+   S L  L+L  N+F+G++P +LCQL K+ +LDLS+N+ SG IP CL+  
Sbjct: 1144 LSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSKITILDLSYNSLSGHIPSCLNKI 1203

Query: 646  SLHR--EEGYYDLIPTYRN-------------EYDIVSYNVGPSMGEKETIDFTTKERSY 690
                    G + +I  + +             E   V+ N  P   +K   +FTTK R+ 
Sbjct: 1204 QFRTGFRSGKFSIISYFPSPGFSSYLYHSQHIELSQVNVNSYPIAYDKAMAEFTTKNRTD 1263

Query: 691  TYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVES 750
             YKG  L S+ G+DLS NKL G IP  IG L ++H LNLS N LTG IP  FS L+ +ES
Sbjct: 1264 FYKGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQVHALNLSHNILTGPIPAAFSGLKSIES 1323

Query: 751  LDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGP 810
            LDLSYNNLTG IP  L EL  LAVF+VA+NNLSGKIPE  AQF TF E+SY GNP+LCG 
Sbjct: 1324 LDLSYNNLTGTIPGELTELTNLAVFSVAYNNLSGKIPEMTAQFGTFLENSYVGNPYLCGS 1383

Query: 811  PLPKICNENRSSTEASTHDNEEDDNLIDMDSFYITFTVSSVIVILGIIGVLWANPYWRHR 870
             L K C    S  E      E +  L D D FY++F  S V+V+LG+  VL+ N  WR +
Sbjct: 1384 LLRKNC----SRAEEEAEIEEGEKGLTDRDIFYVSFGASYVVVLLGVAAVLYINGGWRKK 1439

Query: 871  WFYLVEILITSCYYFVVH 888
            WF+++++LIT C  FV+H
Sbjct: 1440 WFHVIDVLITCCCNFVMH 1457

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 409/967 (42%), Positives = 560/967 (57%), Gaps = 92/967 (9%)

Query: 1    WVDESYSDCCQWQSVLCNATTSRVIAIDLLSLNIAS--ALYLNFSLFTPFQQLESLDLSG 58
            WVD S  +CC+W  + C+ TT RVI + L      S     LN SLF PF++L+SL+L  
Sbjct: 49   WVDSS--NCCEWDGIECDNTTRRVIELSLSGARDQSFGDWVLNASLFLPFKELQSLELRF 106

Query: 59   NNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNN--SVLSSLAGLSSLKNLSLAYNRLEGS 116
            N + GC+ENEG E LS  SNL+ LDLS N FNN  S+LS + GLS+LK+L L+ N L GS
Sbjct: 107  NGLVGCLENEGFEVLS--SNLRNLDLSDNRFNNDKSILSCMTGLSTLKSLDLSGNGLTGS 164

Query: 117  INIEELDS-LSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKV------ 169
               E + S L  L+ LD+S N I N  +    RGL  L+ L+LSG  +   + V      
Sbjct: 165  -GFEIISSHLEKLDNLDLSYN-IFNDSILSHLRGLSYLKSLNLSGNMLLGSTTVNGTFFN 222

Query: 170  ------------------LHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYID 211
                              L +IG+ P LK L +   +   T+   QG CEL +L++L + 
Sbjct: 223  SSTLEELYLDRTSLPINFLQNIGALPDLKVLSVAECDLHGTLPA-QGWCELKNLRQLDLS 281

Query: 212  HNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLE 271
             N+  GSLP CL NL+SL++L V +NQ T N++S PL +LTS+E L LSNN F++P+S++
Sbjct: 282  GNNLGGSLPDCLGNLSSLQLLDVSENQFTGNIASGPLTNLTSLEFLSLSNNLFEVPISMK 341

Query: 272  PFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHH 331
            PF N+S LK F    N++  E  ++  +L PKFQL    LS   ++    IP FLY+Q+ 
Sbjct: 342  PFMNHSSLKFFSSENNKLVTE-PAAFDNLIPKFQLVFFRLSKTTEALNVKIPDFLYYQYD 400

Query: 332  LEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKL 391
            +  + +S  N+   FPSWLL+NNT L  + L+NNS  G  +L      N+  LDIS N +
Sbjct: 401  IRVLDLSHNNITAMFPSWLLKNNTRLEQLYLSNNSFVGTLQLQDHPYLNMTELDISNNNM 460

Query: 392  QGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMG 451
             G IP +I  + PN+  L ++ N F G IPS  G+++SL  LDLSNNQL+    E L   
Sbjct: 461  NGQIPKDICLIFPNMWSLRMANNGFTGCIPSCLGNISSLKILDLSNNQLSIVKLEQLT-- 518

Query: 452  CFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESL-SNCSSLQGLYISD 510
               + +L LSNN+L GQL +   N + L+ L L GN+F G I + L         L +SD
Sbjct: 519  --TIWFLKLSNNNLGGQLPTSVFNSSTLEYLYLHGNNFWGQISDFLLYGWKMWSTLDLSD 576

Query: 511  NDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR------ 564
            N  SG +P W+ N + L AI +  N+ +GPI  +FC+L+ LE LDLS+NN++G       
Sbjct: 577  NQFSGMLPRWLVNSTGLIAIDLSKNYFKGPILRDFCKLNQLEYLDLSENNLSGYIPSCFS 636

Query: 565  ----------------PLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANN 608
                            PL   F   S L+T+DL +N   G+ PNW+G LS L  L+L  N
Sbjct: 637  PPQITHVHLSENRLSGPLTYGFYNNSSLVTMDLRDNNFTGSFPNWIGNLSSLSVLLLRAN 696

Query: 609  NFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHR--EEGYYDLIPTYRNEYDI 666
            +F+GE+P++LC L++L +LD+S N  SG +P CL N +     ++   DL     +    
Sbjct: 697  HFDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTFKESSQKTLADLGADVLSRSIE 756

Query: 667  VSY--NVGPSMGE--------------KETIDFTTKERSYTYKGQPLESIHGLDLSCNKL 710
             +Y   +GP + E              +E I+FTTK   Y YKG+ L  + G+DLS N  
Sbjct: 757  KAYYETMGPPLVESMYNLRKGFLLNFTEEVIEFTTKNMYYRYKGKTLSYMSGIDLSNNNF 816

Query: 711  IGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELN 770
            +G IP   G+L +I +LNLS NNLTG+IP TFSNL+Q+ESLDLSYNNL G IPP+L ++ 
Sbjct: 817  VGAIPPEFGDLSKILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTDIT 876

Query: 771  ALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENR---------- 820
             L VF+VAHNNLSG  PER  QF TFDE  YEGNPFLCGPPL   C+E            
Sbjct: 877  TLEVFSVAHNNLSGNTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEAVPSQPVPSQP 936

Query: 821  SSTEASTHDNEEDDNLIDMDSFYITFTVSSVIVILGIIGVLWANPYWRHRWFYLVEILIT 880
              ++   +D + DD  IDM+ FYI F V   +V++ I+ VL+ +PYWR RW Y +E  I 
Sbjct: 937  VPSQPVPYDEQGDDGFIDMEFFYINFGVCYTVVVMIIVVVLYIDPYWRRRWSYFIEDCID 996

Query: 881  SCYYFVV 887
            +CYYFVV
Sbjct: 997  TCYYFVV 1003

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 390/934 (41%), Positives = 533/934 (57%), Gaps = 86/934 (9%)

Query: 1   WVDESYSDCCQWQSVLCNATTSRVIAIDLLSLNIASA--LYLNFSLFTPFQQLESLDLSG 58
           W+D + S CC+W  + C+ TT RVI + L      S     LN SLF PF++L+SLDL  
Sbjct: 48  WMDIN-SSCCEWDWIKCDNTTRRVIQLSLGGERDESLGDWVLNASLFQPFKELQSLDLGM 106

Query: 59  NNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNN--SVLSSLAG-LSSLKNLSLAYNRLEG 115
            ++ GC+ENEG E LS  S L+ LDLS N FNN  S+LS   G LS+LK+L L+ N L  
Sbjct: 107 TSLVGCLENEGFEVLS--SKLRNLDLSANGFNNDKSILSCFNGNLSTLKSLDLSANGLTA 164

Query: 116 SINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGS 175
                         G   + + ++ L             +LD + LRI      L +IG+
Sbjct: 165 G------------SGTFFNSSTLEEL-------------YLDNTSLRI----NFLQNIGA 195

Query: 176 FPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVP 235
            P+LK L +   +   T+   QG CEL +L++L +  N+F GSLP CL NL+SL++L V 
Sbjct: 196 LPALKVLSVAECDLHGTLPA-QGWCELKNLKQLDLARNNFGGSLPDCLGNLSSLQLLDVS 254

Query: 236 DNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIES 295
           +NQ T N +S PL +L S+E L+LSNN F++P+S++PF N+S LK F    N++  E   
Sbjct: 255 ENQFTGNFTSGPLTNLISLEFLLLSNNLFEVPISMKPFLNHSSLKFFSSENNRLVTE-PV 313

Query: 296 SHSSLTPKFQLTSISLSDHGDSDG-GTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENN 354
           +  +L PKFQL    LS    S+    IP FLY+Q  L  + +S  N+ G FPSWLL+NN
Sbjct: 314 AFDNLIPKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITGMFPSWLLKNN 373

Query: 355 TNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFN 414
           T L  + L+ N   G  +L      N++ LDIS N + G I  +I  + PNL  L ++ N
Sbjct: 374 TRLEQLYLSANFFVGTLQLQDHPYSNMVELDISNNNMSGQISKDICLIFPNLWTLRMAKN 433

Query: 415 AFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKI 474
            F G IPS  G+++SL++LDLSNNQL+    E L      +  L LSNNSL GQ+ +   
Sbjct: 434 GFTGCIPSCLGNISSLLFLDLSNNQLSTVQLEQLT-----IPVLKLSNNSLGGQIPTSVF 488

Query: 475 NLTKLKRLNLDGNHFIGGIPE-SLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMP 533
           N +  + L L+GN+F G I +  L     L  L +S+N  SG +P    N + L  + + 
Sbjct: 489 NSSTSQFLYLNGNNFSGQISDFPLYGWKELNVLDLSNNQFSGMLPRIFVNFTDLRVLDLS 548

Query: 534 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGR----------------------PLNGAFS 571
            NH +GPIP +FC+L  L+ LDLS+NN++G                       PL   F 
Sbjct: 549 KNHYKGPIPKDFCKLGRLQYLDLSENNLSGYIPSCFSPPPLTHVHLSKNRLSGPLTYGFF 608

Query: 572 KCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSH 631
             SYL+T+DL +N L G+IPNW+G  S L  L+L  N+F+GE+P++LC L++L +LD+S 
Sbjct: 609 NSSYLVTMDLRDNSLTGSIPNWIGNHSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQ 668

Query: 632 NNFSGQIPPCLDNTSLHR--EEGYYDLIPTYRNEYDIVSY--NVGPSMGE---------- 677
           N  SG +P CL N +     ++   DL  +   E    +Y   +GP + +          
Sbjct: 669 NQLSGPLPSCLGNLTFKESSQKARMDLGASIVLESMEKAYYKTMGPPLVDSVYLLGKDFR 728

Query: 678 ----KETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNN 733
               +E I+F TK   Y YKG  L  + G+DLS N   G IP   G L  I +LNLS NN
Sbjct: 729 LNFTEEVIEFRTKNMYYGYKGNILSYMSGIDLSNNNFGGAIPQEFGNLSEIRSLNLSHNN 788

Query: 734 LTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQF 793
            T +IP TFSNL+Q+ESLDLSYNNL G IPP+L E+  L VF+VAHNNLSG  PER  QF
Sbjct: 789 PTESIPATFSNLKQIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGWTPERKYQF 848

Query: 794 ATFDEDSYEGNPFLCGPPLPKICNENRSSTEASTHDNEEDDNLIDMDSFYITFTVSSVIV 853
            TFDE  YEGNPFLCGPPL   C+    S++    D + D   IDM+ FYI+F V   +V
Sbjct: 849 GTFDESCYEGNPFLCGPPLRNNCSVEPVSSQPVPDDEQGDVGFIDMEFFYISFGVCYTVV 908

Query: 854 ILGIIGVLWANPYWRHRWFYLVEILITSCYYFVV 887
           ++ I  VL+ NPYWR RW Y +E  I +CYYF+V
Sbjct: 909 VMTIAAVLYINPYWRRRWLYFIEDCIDTCYYFMV 942

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 372/775 (48%), Positives = 491/775 (63%), Gaps = 26/775 (3%)

Query: 131 LDMSDNEIDNLVVPKDY-RGLR--KLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSN 187
           L +  NEI N      + R LR  KL  L+LS  +I D +  L  +    SLK L L +N
Sbjct: 5   LRLGGNEIQNFATSTGFERSLRLNKLEILELSFNKINDST--LSFLEGLSSLKHLNLDNN 62

Query: 188 NFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSP 247
               ++   +GLCEL  LQEL I +ND  G LP CL NL +L+VL +  N  + N+S S 
Sbjct: 63  QLKGSIDM-KGLCELKQLQELDISYNDLNG-LPSCLTNLNNLQVLDISFNNFSGNISLSR 120

Query: 248 LMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLT 307
           +  LTSI  L LS+NHFQIP+SL PFFN S LK  +G  N+I+   E  H+ L P+FQL 
Sbjct: 121 IGSLTSIRDLKLSDNHFQIPISLGPFFNLSNLKNLNGDHNEIYESTELVHN-LIPRFQLQ 179

Query: 308 SISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSL 367
            +SL+ HG   GGT PKFLY+QH L+FV +S + + GEFPSWLL+NNT L ++ L N+SL
Sbjct: 180 RLSLACHGF--GGTFPKFLYYQHDLQFVDLSHIKIIGEFPSWLLQNNTKLEALYLVNSSL 237

Query: 368 SGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDM 427
           SG  +LP  S  N+  LDIS N +Q  IP +IG   P L FL +S N F+GSIPSS  +M
Sbjct: 238 SGSLQLPNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEFLNLSRNYFSGSIPSSISNM 297

Query: 428 NSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGN 487
           +SL  LDLSNN L+G IPE L  GC +L  L+LSNN L+GQ F +  NL  L  L L GN
Sbjct: 298 SSLGVLDLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQFFWRSFNLAYLTDLILSGN 357

Query: 488 HFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQ 547
              G +P SLSN S L+ L +S N++SG IP W+G +S L  + + +N+L G +PS FC 
Sbjct: 358 QLTGILPNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSLQYLDLSENNLYGSLPSSFCS 417

Query: 548 LDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILAN 607
              +  + LSKN + G  L GA   C  L  LDL +N   G IP  +G L +L +L+L  
Sbjct: 418 SRTMTEVYLSKNKLEGS-LIGALDGCLSLNRLDLSHNYFGGGIPESIGSLLELSFLLLGY 476

Query: 608 NNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPT-----YRN 662
           NN EG++P +LC+L+KL L+DLSHN+  G I PCL  TS  + E    L P+       N
Sbjct: 477 NNLEGKIPSQLCKLEKLSLIDLSHNHLFGHILPCLQPTSKWQRERETSLNPSGNSLGREN 536

Query: 663 EYDIVSYNV----GPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRI 718
               + + V     PSM   ++++FTTK  SY++KG  L+ I G+DLSCN L GEIP  +
Sbjct: 537 RGPQIVFPVPAVEDPSM--NKSVEFTTKSISYSFKGIILKYISGIDLSCNNLTGEIPVEL 594

Query: 719 GELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA 778
           G L  I  LNLS N+LTG IP TFSNL+++ESLDLSYNNL G+IP +L++LN L+ F+VA
Sbjct: 595 GNLSNIQVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNNLNGEIPRQLLDLNFLSAFSVA 654

Query: 779 HNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENRSST---EASTHDNEEDDN 835
           HNNLSGK PE +AQF+TF++  YEGNP LCGPPL + C      +    + TH  EE + 
Sbjct: 655 HNNLSGKTPEMVAQFSTFNKSCYEGNPLLCGPPLARNCTRALPPSPLPRSQTHKKEE-NG 713

Query: 836 LIDMDSFYITFTVSSVIVILGIIGVLWANPYWRHRWFYLVEILITSCYYFVVHNL 890
           +IDM++F +TF+V+ ++V+L I  VL+ NP WR  WFY +   I +CYYF+V NL
Sbjct: 714 VIDMEAFIVTFSVAYIMVLLTIGSVLYINPRWRRAWFYFIGESINNCYYFLVDNL 768

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  616 bits (1588), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 398/958 (41%), Positives = 541/958 (56%), Gaps = 78/958 (8%)

Query: 1    WVD--ESYSDCCQWQSVLCNATTSRVIAIDLLSLN--IASALYLNFSLFTPFQQLESLDL 56
            W+D  E   +CC+W  ++C+ TT RVI + L+           LN SLF PF++L+SLDL
Sbjct: 55   WMDNKEDIGNCCEWSGIVCDNTTRRVIQLSLMRARDFRLGDWVLNASLFLPFEELQSLDL 114

Query: 57   SGNNIAGCVENEGLEKLSG-LSNLKFLDLSHNSF-NNSVLSSLAGLSSLKNLSLAYNRLE 114
                + GC ENEG   LS  L  L  L LS+N F ++S+LS   GLSSLK+L L++N L 
Sbjct: 115  GETGLVGCSENEGFGTLSSKLRKLHVLGLSYNKFYSDSILSCFTGLSSLKSLDLSWNTLT 174

Query: 115  GSINIEELDSLSN----LEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIR------ 164
            GS N   L+ LS+    LE L +  N+ ++ +      G   L+ LDLS   +       
Sbjct: 175  GSANFYGLNVLSSRLKKLENLHLRGNQYNDSIF-SSLTGFSSLKSLDLSYNMLTGSTSIN 233

Query: 165  --------------DGSKV----LHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQ 206
                          DGS +    LH+IG  P+LK L     +   T+   QGLC L +L+
Sbjct: 234  GTFFNSTTLEELYLDGSSLPLNFLHNIGVLPALKVLSAGECDLNGTLPA-QGLCGLKNLE 292

Query: 207  ELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQI 266
            +L++  N+  GSLP C  NL+SL++L V  NQ   N++SSPL +L S+E + LSNNHFQ+
Sbjct: 293  QLFLSENNLEGSLPDCFKNLSSLQLLDVSRNQFIGNIASSPLTNLLSLEFISLSNNHFQV 352

Query: 267  PMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHG-DSDGGTIPKF 325
            P+S++PF N+S L+ F    N++  E  S H  L PKFQL   SLS    ++     P F
Sbjct: 353  PISMKPFMNHSSLRFFSSDNNRLVTEPMSFHD-LIPKFQLVFFSLSKSSSEALNVETPSF 411

Query: 326  LYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALD 385
            LY+QH L  + +S  +  G FPSWLL+NNT L  + L  NS  G  +L      ++ A+D
Sbjct: 412  LYNQHDLRVLDLSQNSFIGMFPSWLLKNNTRLEQLFLNENSFFGTLQLQDHPNPDMTAID 471

Query: 386  ISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIP 445
            IS N + G IP  I  +  NL  L ++ N   G IPS  G+ +SL  LDLSNNQL+    
Sbjct: 472  ISNNNMHGEIPKNICLIFSNLWTLRMAKNGLTGCIPSCLGNSSSLGVLDLSNNQLSMVEL 531

Query: 446  EHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQG 505
            E        L +L LSNN+L GQL +  +N ++L  L L  N+F G I +  S   ++  
Sbjct: 532  EQF----ITLTFLKLSNNNLGGQLPASMVNSSRLNYLYLSDNNFWGQISDFPSPIKTIWP 587

Query: 506  -LYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI--- 561
             L +S+N  SG +P W  N++ + AI +  NH  GPIP EFC+LD L+ LDLS NN+   
Sbjct: 588  VLDLSNNQFSGMLPRWFVNLTQIFAIDLSKNHFNGPIPVEFCKLDELKYLDLSDNNLFDS 647

Query: 562  -------------------AGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRY 602
                                  PL   F   S L+TLDL +N   G+I NW+G LS L  
Sbjct: 648  IPSCFNPPHITHVHLSKNRLSGPLTYGFYNSSSLVTLDLRDNNFTGSISNWIGNLSSLSV 707

Query: 603  LILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHR--EEGYYDL---- 656
            L+L  NNF+GE  ++LC L++L +LD+S N  SG +P CL N S     E+   D     
Sbjct: 708  LLLRANNFDGEFLVQLCLLEQLSILDVSQNQLSGPLPSCLGNLSFKESYEKASVDFGFHF 767

Query: 657  ----IPTYRNEYDIVSYNVGPS---MGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNK 709
                I     E++     +G S   +  +E I+FT K   Y YKG+ L  + G+DLS NK
Sbjct: 768  GSTPIEKAYYEFNQTRALLGSSYIPITTEEVIEFTAKSMYYGYKGKILSFMSGIDLSSNK 827

Query: 710  LIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVEL 769
              G IP  +G L  +  LNLS NNLTG+IP TFSNL+Q+ES DLSYNNL G IP +L E+
Sbjct: 828  FSGAIPPELGNLSELLALNLSHNNLTGSIPATFSNLKQIESFDLSYNNLDGVIPHKLYEI 887

Query: 770  NALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENRSSTEASTHD 829
              L VF+VAHNNLSG+ PER  QF TFDE SYEGNPFLCGPPL   C+E  S +    +D
Sbjct: 888  TTLEVFSVAHNNLSGETPERKYQFGTFDESSYEGNPFLCGPPLQNNCSEEESPSLPMPND 947

Query: 830  NEEDDNLIDMDSFYITFTVSSVIVILGIIGVLWANPYWRHRWFYLVEILITSCYYFVV 887
             +EDD  IDM+ FYI+  V  ++V++GI  VL+ NPYWR  WF  ++  I +C+ F++
Sbjct: 948  KQEDDGFIDMNFFYISLGVGYIVVVMGIAAVLYINPYWRCGWFNFIDYCIDTCFNFLL 1005

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112245|ref|XP_002332815.1| predicted protein [Populus trichocarpa] gi|222833209|gb|EEE71686.1| predicted protein [Populus trichocarpa]

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 382/904 (42%), Positives = 523/904 (57%), Gaps = 108/904 (11%)

Query: 1   WVDESYSDCCQWQSVLCNATTSRVIAIDLLSLNIASA--LYLNFSLFTPFQQLESLDLSG 58
           W+ +  + CC W+ + C+++T RVI + L S         Y N SLF PFQQLE L LS 
Sbjct: 52  WIKDD-AHCCDWEHIECSSSTGRVIELVLDSTRNEEVGDWYFNASLFRPFQQLEWLSLSY 110

Query: 59  NNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAY---NRLEG 115
           N IAG VE      + G +NL++L L + + N S    L+ L +  NL+  Y   N  +G
Sbjct: 111 NRIAGWVE------IKGPNNLRYLSLKNITTNGSSFQLLSSLGAFPNLTTVYLNDNDFKG 164

Query: 116 SINIEELDSLSNLEGLDMSDNEID--NLVVPKDYRGLRKLRFLDLSGLRIRDG------- 166
           +I   EL +LS+LE L ++   +D  ++ +      L+ L   ++SG+    G       
Sbjct: 165 TI--LELQNLSSLEKLYLNGCFLDENSIQILGALSSLKYLSLYEVSGIVPSQGFLNILKN 222

Query: 167 ------------SKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHND 214
                       + +L SIG+  SLK L L        +    GLC L +LQEL +  ND
Sbjct: 223 LEHLYSSNSTLDNSILQSIGTITSLKILELVKCRLNGQLPI--GLCNLNNLQELDMRDND 280

Query: 215 FIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFF 274
             G L  CLANLTSL+ L                          LS+NH +IPMSL P +
Sbjct: 281 ISGFLIPCLANLTSLQRLD-------------------------LSSNHLKIPMSLSPLY 315

Query: 275 NYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEF 334
           N SKLK FHG +N+I+ E E  H+ L+PKFQL S+ LS+HG       P+FLYHQ +L+ 
Sbjct: 316 NLSKLKSFHGLDNEIYAE-EDDHN-LSPKFQLQSLYLSNHGQG-ARAFPRFLYHQLNLQS 372

Query: 335 VIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGH 394
           + ++++ M+G+FP+WL+ENNT L+++ L N SLSGPF LP  S  N+  L IS N LQG 
Sbjct: 373 LDLTNIQMKGDFPNWLIENNTYLKNLYLENCSLSGPFLLPKNSHMNLSILSISMNYLQGQ 432

Query: 395 IPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFN 454
           IP EIG  LP L  L++S N FNGSIPSS  +M+ L  LDLSNN LTG IP+HL      
Sbjct: 433 IPSEIGAHLPRLTVLSMSHNGFNGSIPSSLSNMSLLRDLDLSNNVLTGRIPKHLTTSLCL 492

Query: 455 LEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDIS 514
             +L+LSNNSLQG                         IP+S+SNCSSLQ L +S+N++S
Sbjct: 493 FNFLILSNNSLQG------------------------AIPDSMSNCSSLQLLDVSNNNLS 528

Query: 515 GSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCS 574
             IP W+ ++SFLD + +  N+  GP+P        L  + LS+N + G  +  AF   S
Sbjct: 529 PRIPGWIWSMSFLDFLDLSRNNFSGPLPPTISTSSTLRYVYLSRNKLQGL-ITKAFYNFS 587

Query: 575 YLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNF 634
            LLTLDL +N L G IP W+G LS+LRYL+L+ N  EGE+P++LC+L  L L+DLSHN+ 
Sbjct: 588 TLLTLDLSHNNLIGTIPEWIGSLSKLRYLLLSYNKLEGEIPIQLCKLDGLTLIDLSHNHL 647

Query: 635 SGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKG 694
           SG I  C+  TSL       D          IV          ++ ++FTTK  S  Y+G
Sbjct: 648 SGNILSCM--TSLAPFSALTD--------ATIVE-------TSQQYLEFTTKNVSLIYRG 690

Query: 695 QPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLS 754
             ++   G+D SCN   G+IP  I  L +I  LNLS N+L G IP TFS L+++ESLDLS
Sbjct: 691 SIVKLFSGIDFSCNNFTGKIPPEIENLSKIKALNLSHNSLIGPIPPTFSRLKEIESLDLS 750

Query: 755 YNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPK 814
           +N L G+IPP+L EL +L +F+VAHNNLSGK P R+AQFATF+E  Y+ NPFLCG PLPK
Sbjct: 751 HNKLDGEIPPQLTELFSLEIFSVAHNNLSGKTPARVAQFATFEESCYKDNPFLCGEPLPK 810

Query: 815 ICNENRSSTEASTHDNEEDDNLIDMDSFYITFTVSSVIVILGIIGVLWANPYWRHRWFYL 874
           IC  +   +  S  +NE++   IDM+ FY++F ++ ++V++ I+ VL+ NPYWR  WF+ 
Sbjct: 811 ICGASMLPSPTSM-NNEDNGGFIDMEVFYVSFGIAYIMVLVVIVAVLYINPYWRRAWFHF 869

Query: 875 VEIL 878
            E L
Sbjct: 870 TEPL 873

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482745|ref|XP_003632825.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  613 bits (1581), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 389/969 (40%), Positives = 549/969 (56%), Gaps = 85/969 (8%)

Query: 1    WVDESYSDCCQWQSVLCNATTSRVIAI--------------DLLSLNIASALYLNFSLFT 46
            W+D + S+CC W+ V+CN TT RV  +              D           LN SLF 
Sbjct: 55   WIDNNTSECCNWERVICNPTTGRVKKLFLNDITRQQNFLEDDWYHYENVKFWLLNVSLFL 114

Query: 47   PFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNL 106
            PF++L  L+LS N+  G +ENEG + LS L  L+ LD+S N F+ S L SL  ++SLK L
Sbjct: 115  PFEELHHLNLSANSFDGFIENEGFKGLSSLKKLEILDISGNEFDKSALKSLGTITSLKTL 174

Query: 107  SLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDG 166
            ++    L GS +I EL SL NLE LD+S N++++  + +D+  L  L  LDLS   +  G
Sbjct: 175  AICSMGLNGSFSIRELASLRNLEVLDLSYNDLESFQLLQDFASLSNLELLDLS-YNLFSG 233

Query: 167  S--KVLHSIGSFPSLKTLYLKSNNFAKTV-----------------------TTTQGLCE 201
            S    +  + S  +L+ L L  N+F+  V                          QG C+
Sbjct: 234  SIPSSIRLMSSINNLEVLDLSGNSFSGIVPSSIRLLSSLKSLSLAGNHLNGSLANQGFCQ 293

Query: 202  LAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSN 261
            L  LQEL + +N F G LP CL NLTSLR+L +  N  + NLSS  L +LTS+E + LS 
Sbjct: 294  LNKLQELDLSYNLFQGILPPCLNNLTSLRLLDLSVNLFSGNLSSPLLPNLTSLEYIDLSY 353

Query: 262  NHFQIPMSLEPFFNYSKLKIFH-GRENQIFGEIESSHS-SLTPKFQLTSISLSDHGDSDG 319
            N F+   S   F N+SKL++   G  N  F E+E+ +     P FQL ++SL     +  
Sbjct: 354  NQFEGSFSFSSFANHSKLQMVKLGMNNNKF-EVETEYPIGWVPLFQLKALSLDSCKLT-- 410

Query: 320  GTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRK 379
            G +P FL +Q  L  V +S  N+ G FP+WLLENNT L+S++L NNSL G   LP     
Sbjct: 411  GDLPSFLQYQFRLVGVDLSHNNLTGSFPNWLLENNTRLKSLVLRNNSLMGQL-LPLERNT 469

Query: 380  NIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQ 439
             I +LDIS+N+L G +   +  ++PN+ +L +S N F G +PSS  ++ +L YLDLS N 
Sbjct: 470  RIHSLDISHNQLDGQLQENVAHMIPNMKYLNLSDNGFEGILPSSIVELRALWYLDLSTNN 529

Query: 440  LTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSN 499
             +GE+P+ L +   +L  L LSNN   G++FS+  NL +L+ L L  N   G +   +S 
Sbjct: 530  FSGEVPKQL-LAAKDLGVLKLSNNKFHGEIFSRDFNLIRLEVLYLGNNQLTGTLSNVISK 588

Query: 500  CSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKN 559
             S L  L +S+N +SG IP+ +GN+++L  +++ +N  +G +P E  QL  LE LD+S+N
Sbjct: 589  SSWLGVLDVSNNYMSGEIPSQIGNMTYLTTLVLGNNSFKGKLPPEISQLWGLEFLDVSQN 648

Query: 560  NIAGR-------------PLNG---------AFSKCSYLLTLDLCNNRLNGNIPNWMGRL 597
             ++G               L G          F   S+LLTLD+ +NRL G+IPN +  L
Sbjct: 649  ALSGSLPCLKTMESLKHLHLQGNMFTGLIPRDFLNSSHLLTLDMRDNRLFGSIPNSISAL 708

Query: 598  -SQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNT---SLHREEGY 653
              QLR  +L  N   G +P  LC L ++ L+DLS+N+FSG IP C  +     + +E+  
Sbjct: 709  LKQLRIFLLGGNLLSGFIPNHLCHLTEISLMDLSNNSFSGPIPKCFGHIRFGEMKKEDNV 768

Query: 654  YDLIPTYRNEYD--------IVSY--NVGPSMGEKETIDFTTKERSYTYKGQPLESIHGL 703
            +      R   D        +V Y  ++      K+ ++F TK R   Y+G  LE + GL
Sbjct: 769  FGQFIEIRYGMDSHLVYAGYLVKYWEDLSSVYKGKDEVEFVTKNRRDFYRGGILEFMSGL 828

Query: 704  DLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIP 763
            DLSCN L GEIP  +G L  I  LNLS N L G+IP +FS+L Q+ESLDLSYN L G+IP
Sbjct: 829  DLSCNNLTGEIPHELGMLSWIRALNLSHNQLNGSIPKSFSDLSQIESLDLSYNKLGGEIP 888

Query: 764  PRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENRSST 823
              LVELN LAVF+VA+NN+SG++P   AQFATFDE SYEGNPFLCG  L + CN +  S 
Sbjct: 889  LELVELNFLAVFSVAYNNISGRVPNAKAQFATFDESSYEGNPFLCGELLKRKCNTSIESP 948

Query: 824  EASTHDNEEDDNLIDMDS--FYITFTVSSVIVILGIIGVLWANPYWRHRWFYLVEILITS 881
             A +   E +    D++   F+ +FT S ++++LG + +L+ NPYWRHRWF  +E  + S
Sbjct: 949  CAPSQSFESETKWYDINHVVFFASFTTSYIMILLGFVTILYINPYWRHRWFNFIEECVYS 1008

Query: 882  CYYFVVHNL 890
            CYYFV  +L
Sbjct: 1009 CYYFVFDSL 1017

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  609 bits (1571), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 389/951 (40%), Positives = 536/951 (56%), Gaps = 94/951 (9%)

Query: 11  QWQSVLCNATTSRVIAIDLLSLN--IASALYLNFSLFTPFQQLESLDLSGNNIAGCVENE 68
           +W  + C+ TT RVI + L            LN SLF PF++L+SLDL  N + GC+ENE
Sbjct: 28  RWPRIECDNTTKRVIQLSLFDARDFRLGDWVLNASLFLPFKELQSLDLGYNGLVGCLENE 87

Query: 69  GLEKLSGLSNLKFLDLSHNSFNN--SVLSSLAGLS-------SLKNLSLAYNRLEGSINI 119
           G + LS  S L+ L LS N FNN  S+LS   GL         L+NL L+ N+   +I  
Sbjct: 88  GFQVLS--SKLRELGLSDNRFNNDKSILSCFNGLKVLSSRLKKLENLDLSGNQCNDTI-F 144

Query: 120 EELDSLSNLEGLDMSDNEIDNLVVPK-DY-RGLRKLRFLDLSGLRIRDGS---------- 167
             L   S+L+ LD+S N++    + K D+ + LR L+ L L    +  G+          
Sbjct: 145 PALTGFSSLKSLDLSGNQLTASGLRKLDFLQSLRSLKTLSLKDTNLSQGTFFNSSTLEEL 204

Query: 168 ---------KVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGS 218
                      L +  + P+LK L +   +   T+   QG CEL +L++L +  N+F G+
Sbjct: 205 HLDNTSLPINFLQNTRALPALKVLSVGECDLHGTLPA-QGWCELKNLKQLDLARNNFGGA 263

Query: 219 LPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSK 278
           LP CL NL+SL +L V +NQ T N+ S PL +L S+E L LSNN F++P S++PF N+S 
Sbjct: 264 LPDCLGNLSSLTLLDVSENQFTGNIVSGPLTNLVSLEFLSLSNNLFEVPTSMKPFMNHSS 323

Query: 279 LKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIIS 338
           LK F    N++  E  ++  +L PKFQL  +SL    ++    IP FLY+Q+ L  + +S
Sbjct: 324 LKFFSSENNRLVTE-PAAFDNLIPKFQLVFLSLLKTTEALNVHIPDFLYYQYDLRVLDLS 382

Query: 339 DVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVE 398
             N+ G FPSWLL+NNT +  + L++NS  G  +LP     N+  LDIS N +   IP +
Sbjct: 383 HNNITGMFPSWLLKNNTRMEQLDLSDNSFVGTLQLPDHPYPNMTKLDISNNNMNSQIPKD 442

Query: 399 IGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL 458
           I  +LPNL  L +  N F G IPS  G+++SL  LDLSNNQL+    E L      L +L
Sbjct: 443 ICLILPNLESLRMVKNGFTGCIPSCLGNISSLSVLDLSNNQLSTVKLELLT----TLMFL 498

Query: 459 LLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPE-SLSNCSSLQGLYISDNDISGSI 517
            LSNN+L GQ+     N + L+ L L+GN+F G I   SL        L +S+N  SG +
Sbjct: 499 KLSNNNLGGQIPISVFNSSTLEFLYLNGNNFCGQILYLSLYEQKMWFVLDLSNNQFSGML 558

Query: 518 PTWMGNISFLDAIIMPDNHLEGPIPSEF-CQLDYLEILDLSKNNIAGR------------ 564
           P W  N + L+AI +  NH +GPIP +F C+ D+LE LDLS+NN++G             
Sbjct: 559 PRWFVNSTVLEAIDLSKNHFKGPIPRDFFCKFDHLEYLDLSENNLSGYIPSCFSPPQITH 618

Query: 565 ----------PLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEV 614
                     PL   F   S L+T+DL +N    +IPNW+G LS L  L+L  N+F+   
Sbjct: 619 LHLSKNRLSGPLTYGFYNSSSLVTMDLQDNSFTDSIPNWIGNLSSLSVLLLRANHFD--- 675

Query: 615 PLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHR------------------EEGYYDL 656
                  ++L +LD+S N  SG +P CL N +                     E+ YY+ 
Sbjct: 676 -------EQLSILDVSQNQLSGPLPSCLGNLTFKESSQKAILDFVIFDISRSIEKTYYET 728

Query: 657 IPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPS 716
           +     +   +    G ++ E E I+FTTK+ SY YKG+ L  + G+DLS N  +G IP 
Sbjct: 729 MGPPLVDSVYLGKGFGLNLIE-EVIEFTTKKMSYGYKGKVLNYMSGIDLSNNNFVGAIPP 787

Query: 717 RIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFT 776
             G L  I +LNLS NNLTG+IP TFSNL+Q+ESLDLSYNNL G IPP+L E+  L VF+
Sbjct: 788 EFGNLSEILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTEITTLEVFS 847

Query: 777 VAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENRSSTEASTHDNEEDDNL 836
           VAHNNLSGK PER  QF TFDE  YEGNPFLCGPPL   C+E   S++   +D + DD  
Sbjct: 848 VAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEAVSSQPVPNDEQGDDGF 907

Query: 837 IDMDSFYITFTVSSVIVILGIIGVLWANPYWRHRWFYLVEILITSCYYFVV 887
           +DM+ FYI+F V   +V++ I  VL+ NPYWR RW + +E  I +CYYF V
Sbjct: 908 VDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWLFFIEDCIDTCYYFGV 958

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  607 bits (1564), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 386/976 (39%), Positives = 542/976 (55%), Gaps = 107/976 (10%)

Query: 1    WVDESYSDCCQWQSVLCNATTSRVIAIDL---------LSLNI-----ASALYLNFSLFT 46
            W+D + SDCC W+ V+CN TT RV  + L         L +N           LN SLF 
Sbjct: 55   WIDNNISDCCNWERVICNPTTGRVKKLSLNDIRQQQNMLEVNWYYYENVKFWLLNVSLFL 114

Query: 47   PFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNL 106
            PF++L  L+LS N+  G +ENEG + LS L  L+ LD+S N F+ S L SL  ++SLK L
Sbjct: 115  PFEELHHLNLSANSFDGFIENEGFKGLSSLKKLEILDISGNEFDKSALKSLGAITSLKTL 174

Query: 107  SLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDG 166
            ++    L+GS  I+EL S  NLE LD+S N++++  + +    L+KL  L +SG      
Sbjct: 175  AIRSMGLDGSFPIQELASSRNLEVLDLSYNDLESFQLVQGLLSLKKLEILAISGNEF--D 232

Query: 167  SKVLHSIGSFPSLKTLYL-------------------------KSNNFAKTVTTT----- 196
              V+ S+G+  SLKTL L                           N+F+  + ++     
Sbjct: 233  KSVIKSLGAITSLKTLVLCRIGLNGSFPIQDFASLSNLEILDLSYNSFSGILPSSIRLMS 292

Query: 197  ------------------QGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQ 238
                              QG C+L  LQEL ++ N F G LP CL NLTSLR+L +  N 
Sbjct: 293  SLKSLSLAGNQLNGSLPNQGFCQLNKLQELDLNSNFFQGILPPCLNNLTSLRLLDLSHNL 352

Query: 239  LTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKI-FHGRENQIFGEIESSH 297
             + N+SSS L  LTS+E + LS N F+ P S   F N+S L++  HG +N  F EIE+ +
Sbjct: 353  FSGNVSSSLLPSLTSLEYIDLSYNLFEGPFSFNSFANHSNLQVVIHGSDNNKF-EIETEY 411

Query: 298  S-SLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTN 356
                 P FQL  + LS++     G  P FL +Q  L  V +S  N+ G FP+WLLENNT 
Sbjct: 412  PVGWVPLFQLKVLVLSNYKLI--GDFPGFLRYQFRLTVVDLSHNNLTGSFPNWLLENNTR 469

Query: 357  LRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAF 416
            L  ++L NNSL G   LP R    I +LDIS N+L G +   +  ++PN+  L +S N F
Sbjct: 470  LEYLVLRNNSLMGQL-LPLRPNSRITSLDISDNRLVGELQQNVANMIPNIEHLNLSNNGF 528

Query: 417  NGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINL 476
             G +PSS  +M+SL  LDLS N  +GE+P+ L +   +LE+L LSNN   G++FS+  NL
Sbjct: 529  EGILPSSIAEMSSLWSLDLSANSFSGEVPKQLLVAK-DLEFLKLSNNKFHGEIFSRDFNL 587

Query: 477  TKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNH 536
            T L+ L+LD N F G +   +S  S L+ L +S+N++SG IP+W+GN++ L  +++ +N 
Sbjct: 588  TSLEFLHLDNNQFKGTLSNVISRSSWLRVLDVSNNNMSGEIPSWIGNMTDLTTLVLGNNS 647

Query: 537  LEGPIPSEFCQLDYLEILDLSKNNIAGR-------------PLNG---------AFSKCS 574
             +G +P E  QL  LE LD+S+N ++G               L G          F   S
Sbjct: 648  FKGKLPPEISQLQRLEFLDVSQNTLSGSLPSLKSIEYLKHLHLQGNMFTGLIPRDFLNSS 707

Query: 575  YLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNF 634
             LLTLD+ +NRL G+IPN + RL +LR  +L  N   G +P +LC L K+ L+DLS+NNF
Sbjct: 708  NLLTLDIRDNRLFGSIPNSISRLLELRIFLLRGNLLSGFIPNQLCHLTKISLMDLSNNNF 767

Query: 635  SGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVG-----------PSMGEKETIDF 683
            SG IP C  +      +  +++     N Y   S   G               E + ++F
Sbjct: 768  SGSIPKCFGHIQFGDFKTEHNVYKPMFNPYSFFSIYTGYLVKYLFFSTEAHRDEVDEVEF 827

Query: 684  TTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFS 743
             TK RS +Y G  L+ + GLDLSCN L GEIP  +G L  I  LNLS N L G++P +FS
Sbjct: 828  VTKNRSNSYGGGILDFMSGLDLSCNNLTGEIPRELGMLSSILALNLSHNQLKGSVPKSFS 887

Query: 744  NLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEG 803
             L Q+ESLDLSYN L+G+IPP  + LN L VF VAHNN+SG++P+   QF TF E SYE 
Sbjct: 888  KLSQIESLDLSYNKLSGEIPPEFIGLNFLEVFNVAHNNISGRVPDMKEQFGTFGESSYED 947

Query: 804  NPFLCGPPLPKICNENRSSTEASTHDNEEDDNL---IDMDSFYITFTVSSVIVILGIIGV 860
            NPFLCGP L + CN +  S  + +  ++E +     ID   F+ +F  S ++++LG   +
Sbjct: 948  NPFLCGPMLKRKCNTSIESPNSPSQPSQESEAKWYDIDHVVFFASFVASYIMILLGFAAI 1007

Query: 861  LWANPYWRHRWFYLVE 876
            L+ NPYWR RWF  +E
Sbjct: 1008 LYINPYWRQRWFNFIE 1023

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	892
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.949	0.905	0.328	6e-103
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.933	0.917	0.329	2.4e-99
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.934	0.834	0.300	8.9e-86
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.715	0.653	0.342	7.2e-84
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.930	0.931	0.304	9.7e-80
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.843	0.694	0.322	1.3e-77
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.738	0.682	0.325	5.5e-77
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.899	0.897	0.288	7.4e-66
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.900	0.839	0.290	3.2e-65
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.732	0.574	0.295	5e-65

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
 Identities = 302/920 (32%), Positives = 452/920 (49%)

Query:     1 WVDESYSDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLS--G 58
             W +++ SDCCQW  + CN T+ RVI + +  +    +  LN SL  PF+++ SL+LS  G
Sbjct:    44 WTNDTKSDCCQWDGIKCNRTSGRVIELSVGDMYFKESSPLNLSLLHPFEEVRSLNLSTEG 103

Query:    59 -NNIAGCVEN-EGLEKLSGLSNLKFLDLSHNSFXXXXXXXXXXXXXXXXXXXAYNRLEGS 116
              N   G  ++ EG   LSGL NLK +DLS N F                    YN ++G 
Sbjct:   104 YNEFNGFFDDVEGYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGP 163

Query:   117 INIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF 176
               I+ L  L+NLE LD+  N+++  +  ++   L+KL+ LDLS  +    S  L  + + 
Sbjct:   164 FPIKGLKDLTNLELLDLRANKLNGSM--QELIHLKKLKALDLSSNKF-SSSMELQELQNL 220

Query:   177 PSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPD 236
              +L+ L L  N+    +   +  C+L +L++L +  N F+G +P CL +L  LRVL +  
Sbjct:   221 INLEVLGLAQNHVDGPIPI-EVFCKLKNLRDLDLKGNHFVGQIPLCLGSLKKLRVLDLSS 279

Query:   237 NQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESS 296
             NQL+ +L SS    L S+E L LS+N+F    SL P  N + LK         F  +E  
Sbjct:   280 NQLSGDLPSS-FSSLESLEYLSLSDNNFDGSFSLNPLTNLTNLKFVVVLR---FCSLEKI 335

Query:   297 HSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQH-HLEFVIISDVNMRGEFPSWLLENNT 355
              S L  + +L  + LS +  S  G IP +L   +  LE + + + N    FP   + +N 
Sbjct:   336 PSFLLYQKKLRLVDLSSNNLS--GNIPTWLLTNNPELEVLQLQN-NSFTIFPIPTMVHNL 392

Query:   356 NLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNA 415
              +     ANN    P ++   +  N++ L+ S N  QG+ P  IG+ + N+ FL +S+N 
Sbjct:   393 QIFDFS-ANNIGKFPDKMD-HALPNLVRLNGSNNGFQGYFPTSIGE-MKNISFLDLSYNN 449

Query:   416 FNGSIPSSF--GDMNSLIYLDLSNNQLTGE-IPEHLAMGCFNLEYXXXXXXXXXXXXFSK 472
             F+G +P SF  G + S+++L LS+N+ +G  +P        +L+                
Sbjct:   450 FSGKLPRSFVTGCV-SIMFLKLSHNKFSGRFLPRETNFP--SLDVLRMDNNLFTGNIGGG 506

Query:   473 KINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIP-TWMGN--ISFLDA 529
               N T L+ L++  N   G IP  L     L  + IS+N + G+IP + +G   +SFLD 
Sbjct:   507 LSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDL 566

Query:   530 --------------------IIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR-PLNG 568
                                 + + +N+  GPIP     L  ++ILDL  N ++G  P   
Sbjct:   567 SGNQFSGALPSHVDSELGIYMFLHNNNFTGPIPDTL--LKSVQILDLRNNKLSGSIP--- 621

Query:   569 AFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPXXXXXXXXXXXXX 628
              F     +  L L  N L G+IP  +  LS +R L L++N   G +P             
Sbjct:   622 QFDDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGRL-- 679

Query:   629 XSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKER 688
                +  +  IPP    TSL  E         Y++ + +    V  S  ++  I F  K+R
Sbjct:   680 -QEDAMALNIPPSFLQTSLEME--------LYKSTFLVDKIEVDRSTYQETEIKFAAKQR 730

Query:   689 SYTYKGQP------LESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTF 742
               +Y G+       L  ++G+DLS N+L G IP+ +G+L+++ TLNLS N+L G+IP +F
Sbjct:   731 YDSYSGRSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSF 790

Query:   743 SNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYE 802
             S L  VESLDLS+N L G IP  L  L +LAVF V+ NNLSG IP+   QF TF+E+SY 
Sbjct:   791 SKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQG-RQFNTFEEESYL 849

Query:   803 GNPFLCGPPLPKICNENRSSTEASTHDNEEDDNL-IDMDSFYITFTXXXXXXXXXXXXXX 861
             GNP LCGPP  + C  N+S  EA     EEDD   IDM  FY +                
Sbjct:   850 GNPLLCGPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMVFYFSTASIYVTALIGVLVLM 909

Query:   862 WANPYWRHRWFYLVEILITS 881
               +  WR  W  +V+  I S
Sbjct:   910 CFDCPWRRAWLRIVDAFIAS 929

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
 Identities = 299/907 (32%), Positives = 435/907 (47%)

Query:    10 CQWQSVL---CNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVE 66
             C++ SVL    N T S     + +  N  S      SL+T +     L++S  N++    
Sbjct:    35 CEYDSVLPTWTNDTKSDCCQWENIKCNRTSRRLTGLSLYTSYY----LEISLLNLSLLHP 90

Query:    67 NEGLEKLSGLSNLKFLDLSHNSFXXXXXXXXXXXXXXXXXXXAYNRLEGSINIEELDSLS 126
              E +  L  LSN +   L  +                     + N    SI    L++ +
Sbjct:    91 FEEVRSLD-LSNSRLNGLVDD---VEGYKSLRRLRNLQILNFSSNEFNNSI-FPFLNAAT 145

Query:   127 NLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKS 186
             +L  L +  N +   +  K+ + L  L  LDLSG RI DGS  +        LK L L S
Sbjct:   146 SLTTLSLRRNNMYGPIPLKELKNLTNLELLDLSGNRI-DGSMPVREFPYLKKLKALDLSS 204

Query:   187 NNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSS 246
             N    ++   Q  CE+ +LQEL +   +F+G LP C  NL  LR L +  NQLT N+  S
Sbjct:   205 NGIYSSMEW-QVFCEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPS 263

Query:   247 PLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLK--IFHGRENQIFGEIESSHSSLTPKF 304
                 L S+E L LS+N F+   SL P  N +KLK  IF  +++ +  +IES+     P F
Sbjct:   264 -FSSLESLEYLSLSDNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQVKIESTWQ---PLF 319

Query:   305 QLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILAN 364
             QL+ + L          IP FL +Q +L  V +S   + G  P+WLLENN  L  + L N
Sbjct:   320 QLSVLVLRLCSLEK---IPNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKN 376

Query:   365 NSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSF 424
             NS +  F++PT S  N+  LD S N + G  P   G+VLPNL  +  S N F G+ PSS 
Sbjct:   377 NSFT-IFQMPT-SVHNLQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSM 434

Query:   425 GDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXXXXXFSKKINLTKLKRLNL 484
             G+M ++ +LDLS N L+GE+P+     CF+L                ++ N T L  L +
Sbjct:   435 GEMYNISFLDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRI 494

Query:   485 DGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWM------------GN--------- 523
             + N F G I   L     L  L +S+N + G +P  +            GN         
Sbjct:   495 NNNLFTGKIGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALPSH 554

Query:   524 ISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR-PLNGAFSKCSYLLTLDLC 582
             +S  + + + +N+  GPIP  F  L  ++ILDL  N ++G  P        S+LL   L 
Sbjct:   555 VSLDNVLFLHNNNFTGPIPDTF--LGSIQILDLRNNKLSGNIPQFVDTQDISFLL---LR 609

Query:   583 NNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPXXXXXXXXXXXXXXSHNNFSGQIPPCL 642
              N L G IP+ +   S++R L L++N   G +P                 N+   +   L
Sbjct:   610 GNSLTGYIPSTLCEFSKMRLLDLSDNKLNGFIPSCFNNLSFGLARKEEITNY--YVAVAL 667

Query:   643 DNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQ------P 696
                     E +Y  +  Y++ + + ++ +  S   +  + F TK+R  +Y G        
Sbjct:   668 --------ESFY--LGFYKSTFVVENFRLDYSNYFEIDVKFATKQRYDSYIGAFQFSEGT 717

Query:   697 LESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYN 756
             L S++GLDLS N+L G IP+ +G+L ++  LNLS N L+  IP +FS L+ +ESLDLSYN
Sbjct:   718 LNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYN 777

Query:   757 NLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKIC 816
              L G IP +L  L +LA+F V++NNLSG IP+   QF TFDE+SY GNP LCGPP    C
Sbjct:   778 MLQGSIPHQLTNLTSLAIFNVSYNNLSGIIPQG-KQFNTFDENSYLGNPLLCGPPTDTSC 836

Query:   817 NENRSSTEASTHDNEEDDN--LIDMDSFYITFTXXXXXXXXXXXXXXWANPYWRHRWFYL 874
              E + ++E + +  EEDD    IDM  FY +                  +  WR  W  L
Sbjct:   837 -ETKKNSEENANGGEEDDKEVAIDMLVFYWSTAGTYVTALIGILVLMCVDCSWRRAWLRL 895

Query:   875 VEILITS 881
             V+  I S
Sbjct:   896 VDAFIAS 902

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 268/893 (30%), Positives = 412/893 (46%)

Query:    18 NATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLS 77
             NA TS  +    L+ N   + +L    F     LE LDL GN   G +  +    L    
Sbjct:    93 NAATS--LTTLFLTYNNMHSPFL-VKEFKDLTNLEHLDLRGNRFNGSIPTQDYNSLRRFR 149

Query:    78 NLKFLDLSHNSFXXXXXXXXXXXXXXXXXXXAYNRLEGSINIEELDSLSNLEGLDMSDNE 137
              L+ LDLS N F                     N + G    +EL  L+N+E LD+S N 
Sbjct:   150 KLEILDLSDNLFNSRIFPFLNSATSLKSLSLWGNNMGGPFPAKELRDLTNVELLDLSRNR 209

Query:   138 IDNLVVPKDYRGLRKLRFLDLSGLRIRDG-------SKVLHSIGSFP--SLKTLYLKSNN 188
              +  +  +    LRKL+ LDLS              +K     G+ P  +++ L L +N 
Sbjct:   210 FNGSIPVRALFALRKLKALDLSDNEFSSSVELQGKFAKTKPLSGTCPWKNMEELKLSNNK 269

Query:   189 FAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPL 248
              A        L  L  L+ L +  N   G++P  LANL SL  L +  N      S   L
Sbjct:   270 LAGQFPLC--LTSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSLFGNNFEGFFSLGLL 327

Query:   249 MHLTSIELLILSNNHFQIPMSLEPFFNYS-KLKIFHGRENQIFGEIESSHSSLTPKFQLT 307
              +L+ +++L L +    + +  E  +    +L +   R   +  E +  H  L  K  L 
Sbjct:   328 ANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRSCNL--E-KVPHFLLHQK-DLH 383

Query:   308 SISLSDHGDSDGGTIPKFLYHQH-HLEFVIISDVNMRGEFPSWLLENNT-NLRSIILANN 365
              + LSD+     G  P +L   +  LE +++ +      F S+ L  +  NL  + ++ N
Sbjct:   384 HVDLSDN--QIHGNFPSWLLENNTKLEVLLLQN----NSFTSFQLPKSAHNLLFLNVSVN 437

Query:   366 SLSGPFRLPTRS--RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSS 423
               +  F L        +++ ++++YN  QG++P  +   + ++ FL +S N F+G +P  
Sbjct:   438 KFNHLF-LQNFGWILPHLVCVNLAYNGFQGNLPSSLDN-MKSIEFLDLSHNRFHGKLPRR 495

Query:   424 F--GDMNSLIYLDLSNNQLTGEI-PEHLAMGCFNLEYXXXXXXXXXXXXFSKKI-NLTKL 479
             F  G  N L  L LS+N+L+GE+ PE      F   +              K   +L  L
Sbjct:   496 FLKGCYN-LTILKLSHNKLSGEVFPE---AANFTRLWVMSMDNNLFTGNIGKGFRSLPSL 551

Query:   480 KRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEG 539
               L++  N   G IP  +     L  L +S+N + G IPT + NIS+L  + +  N L G
Sbjct:   552 NVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSG 611

Query:   540 PIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQ 599
              IP     + +  +L L  NN++G   +        ++ LDL NNRL+GN+P ++     
Sbjct:   612 DIPPHVSSIYHGAVLLLQNNNLSGVIPDTLLLN---VIVLDLRNNRLSGNLPEFINT-QN 667

Query:   600 LRYLILANNNFEGEVPXXXXXXXXXXXXXXSHNNFSGQIPPCLDNTSLHREEG---Y-YD 655
             +  L+L  NNF G++P              S+N F+G IP CL NTS    +G   Y YD
Sbjct:   668 ISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGDDSYRYD 727

Query:   656 LIPTYRNEYDIV---------SYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLS 706
             +   +    D V          +N+      +  I+F TK R   Y G  L+ + G+DLS
Sbjct:   728 VPSRFGTAKDPVYFESLLMIDEFNMVNETNSQTKIEFATKHRYDAYMGGNLKLLFGMDLS 787

Query:   707 CNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRL 766
              N+L GEIP  +G L+ +  LNLS NNL+G I  +FS L+ VESLDLS+N L G IP +L
Sbjct:   788 ENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQGPIPLQL 847

Query:   767 VELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENRSSTEAS 826
              ++ +LAVF V++NNLSG +P+   QF TF+  SY GNP LCG  +   C  N  +   +
Sbjct:   848 TDMISLAVFNVSYNNLSGIVPQG-RQFNTFETQSYFGNPLLCGKSIDISCASN--NFHPT 904

Query:   827 THDNEEDDNLIDMDSFYITFTXXXXXXXXXXXXXXWANPYWRHRWFYLVEILI 879
              +  E D++ +DM+SFY +F                 +  W   WFY+V+  +
Sbjct:   905 DNGVEADESTVDMESFYWSFVAAYVTILLGILASLSFDSPWSRAWFYIVDAFV 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
 Identities = 233/680 (34%), Positives = 345/680 (50%)

Query:     1 WVDESYSDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSG-- 58
             W +++ S+CC+W+ + CN T+ R+I + +   N   +  LN SL  PF++L SL+LSG  
Sbjct:    58 WTNDTKSNCCRWEGLKCNQTSGRIIELSIGQTNFKESSLLNLSLLHPFEELRSLNLSGEI 117

Query:    59 -NNIAGCVEN-EGLEKLSGLSNLKFLDLSHNSFXXXXXXXXXXXXXXXXXXXAYNRLEGS 116
              N   G  ++ EG E L  L NL+ LDLS NSF                     N + G 
Sbjct:   118 YNEFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNYIGGP 177

Query:   117 INIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKV--LHSIG 174
             + I+EL +L+ LE LD+S +   N  +P ++  L KL+ LDLS     D S +  L  + 
Sbjct:   178 LPIKELKNLTKLELLDLSRSGY-NGSIP-EFTHLEKLKALDLSA---NDFSSLVELQELK 232

Query:   175 SFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHV 234
                +L+ L L  N+    +   +  CE+ +L++L +  N F G LP CL NL  LRVL +
Sbjct:   233 VLTNLEVLGLAWNHLDGPIPK-EVFCEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDL 291

Query:   235 PDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIE 294
               NQL+ NL +S    L S+E L LS+N+F+   SL P  N +KLK+F         ++E
Sbjct:   292 SSNQLSGNLPAS-FNSLESLEYLSLSDNNFEGFFSLNPLANLTKLKVFRLSSTSEMLQVE 350

Query:   295 SSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENN 354
             +  S+  PKFQLT  +L        G IP FL +Q +L  V +S   + G+ P+WLLENN
Sbjct:   351 TE-SNWLPKFQLTVAALPF---CSLGKIPNFLVYQTNLRLVDLSSNRLSGDIPTWLLENN 406

Query:   355 TNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFN 414
               L+ + L NNS +  F++PT   K +  LD S N + G +P  IG VLP L  +  S N
Sbjct:   407 PELKVLQLKNNSFT-IFQIPTIVHK-LQVLDFSANDITGVLPDNIGHVLPRLLHMNGSHN 464

Query:   415 AFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXXXXXFSKKI 474
              F G++PSS G+MN + +LDLS N  +GE+P  L  GCF+L                 + 
Sbjct:   465 GFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQT 524

Query:   475 NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMG-NISFLDAIIMP 533
              LT L  L +  N F G I   L    +L     S+N ++G I + +  + S L  +++ 
Sbjct:   525 RLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIMLLLS 584

Query:   534 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGR-P---LNGAFSKCSYL----------LTL 579
             +N LEG +P     + +L  LDLS N ++G  P   +N  +    +L          +TL
Sbjct:   585 NNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFTGPLPVTL 644

Query:   580 -------DLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPXXXXXXXXXXXXXXSHN 632
                    DL NN+L+G+IP ++    ++  L+L  NN  G +P              S N
Sbjct:   645 LENAYILDLRNNKLSGSIPQFVNT-GKMITLLLRGNNLTGSIPRKLCDLTSIRLLDLSDN 703

Query:   633 NFSGQIPPCLDNTSLHREEG 652
               +G IPPCL++ S    EG
Sbjct:   704 KLNGVIPPCLNHLSTELGEG 723

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 279/916 (30%), Positives = 418/916 (45%)

Query:     9 CCQWQSVLCNATTSRVIAIDLL--SLNIASAL-YLNFSLFTPFQQLESLDLSGNNIAGCV 65
             CC W+ + C+ T+ RVI I L   S+     L  LN + F PF++L+SL+LS     G  
Sbjct:     7 CCHWRRIKCDITSKRVIGISLSLESIRPPDPLPQLNLTFFYPFEELQSLNLSSGYFKGWF 66

Query:    66 -ENEGLEKLSGLSNLKFLDLSHNSFXXXXXXXXXXXXXXXXXXXAYNRLEGSINIEELDS 124
              E +G + L  L NL+ LDL  N +                     N  +G   ++EL +
Sbjct:    67 DERKGGKGLGSLRNLETLDLGVNFYDTSVLPYLNEAVSLKTLILHDNLFKGGFPVQELIN 126

Query:   125 LSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYL 184
             L++LE LD+  N+    +  ++   LR LR LDLS  +   GS     I     L+ L L
Sbjct:   127 LTSLEVLDLKFNKFSGQLPTQELTNLRNLRALDLSNNKF-SGSLQKQGICRLEQLQELRL 185

Query:   185 KSNNFAKTVTTTQGLC--ELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTEN 242
               N F   +     LC    + L+ L +  N   G +P+ +++  S+  L + DN     
Sbjct:   186 SRNRFEGEIP----LCFSRFSKLRVLDLSSNHLSGKIPYFISDFKSMEYLSLLDNDFEGL 241

Query:   243 LSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSL-- 300
              S   +  LT +++  LS+    + + +E   N S      G ++Q+   I  SH +L  
Sbjct:   242 FSLGLITELTELKVFKLSSRSGMLQI-VET--NVSG-----GLQSQL-SSIMLSHCNLGK 292

Query:   301 TPKF-----QLTSISLSDHGDSDGGTIPKFLYHQH-HLEFVIISDVNMRG-EFPSWL--- 350
              P F     +L  I LS++  S  G  P +L   +  L+ +++ + + +    P  +   
Sbjct:   293 IPGFLWYQQELRVIDLSNNILS--GVFPTWLLENNTELQALLLQNNSFKTLTLPRTMRRL 350

Query:   351 --LE---NNTN-------------LRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQ 392
               L+   NN N             LR + L+NN   G         +NI  +D+SYN   
Sbjct:   351 QILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFS 410

Query:   393 GHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGC 452
             G +P  +     +L +L +S N F+G I     D  SLI L + NN  TG+IP  L    
Sbjct:   411 GKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTL---- 466

Query:   453 FNLEYXXXXXXXXX--XXXFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISD 510
              NL                  + +    L+ L +  N   G IP SL N   L  L +S 
Sbjct:   467 LNLRMLSVIDLSNNLLTGTIPRWLGNFFLEVLRISNNRLQGAIPPSLFNIPYLWLLDLSG 526

Query:   511 NDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDY-LEILDLSKNNIAGR-PLNG 568
             N +SGS+P    +  +   + + +N+L G IP     L Y L +LDL  N ++G  PL  
Sbjct:   527 NFLSGSLPL-RSSSDYGYILDLHNNNLTGSIPDT---LWYGLRLLDLRNNKLSGNIPLFR 582

Query:   569 AFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPXXXXXXXXXXXXX 628
             +    S +L   L  N L G IP  +  LS +R L  A+N     +P             
Sbjct:   583 STPSISVVL---LRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLSFGSG-- 637

Query:   629 XSHNNFSGQIPPC--LDN-TSLHREEGYYDLIPTYRNEYDI-VSYNVGPSMGEKETIDFT 684
               H+N      P   L N   ++ E  Y  LI + R   D  V +NV         ++F 
Sbjct:   638 -GHSNADSDWYPASLLSNFMEIYTEVYYESLIVSDRFSLDYSVDFNV--------QVEFA 688

Query:   685 TKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSN 744
              K+R   Y    L  + GLDLS N+L G IP  +G+L R+ +LNLSRN+L+G+IP +FSN
Sbjct:   689 VKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSN 748

Query:   745 LRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGN 804
             LR +ESLDLS+N L G IP +L  L +L VF V++NNLSG IP+   QF TF E SY GN
Sbjct:   749 LRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQG-KQFNTFGEKSYLGN 807

Query:   805 PFLCGPPLPKICNENRSSTEASTHDNEEDDNLIDMDSFYITF-TXXXXXXXXXXXXXXWA 863
               LCG P  + C     S+    ++++++  L+D+   + +  T              + 
Sbjct:   808 FLLCGSPTKRSCGGTTISS-GKEYEDDDESGLLDIVVLWWSLGTTYVTVMMGFLVFLCFD 866

Query:   864 NPYWRHRWFYLVEILI 879
             +P WR  WF LV+  I
Sbjct:   867 SP-WRRAWFCLVDTFI 881

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 263/815 (32%), Positives = 386/815 (47%)

Query:    22 SRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLE--KLSGLSNL 79
             S +  + +L+L   S  +L+    T F+ LE LDLS N +     +  L   KL  L +L
Sbjct:   157 SNMTNLRVLNLKDNSFSFLSSQGLTDFRDLEVLDLSFNGVNDSEASHSLSTAKLKTL-DL 215

Query:    80 KFLDLSHNSFXXXXXXXXXXXXXXXXXXXAYNRLEGSINIEELDSLSNLE----GLDMSD 135
              F  LS  S                     +N    +  +++L  L  L+    G    D
Sbjct:   216 NFNPLSDFS-QLKGLESLQELQVLKLRGNKFNHTLSTHVLKDLKMLQELDLSDNGFTNLD 274

Query:   136 N--EIDNLVVPK--DYRGL-RKLRFLDLSGLRIRDGSKVLH----SIGS-------FP-S 178
             +  ++D     K  D+R + +K+  L + GLR+     + H    ++G         P S
Sbjct:   275 HGRDVDESRSEKRFDFREVVQKVETLWI-GLRLSFQMSITHHKSVTVGGNGFLGLEIPTS 333

Query:   179 LKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQ 238
             L+ L  K N  + T     G+C L  L+EL +  N  + SLP+CL NLT LR L + +NQ
Sbjct:   334 LQVLDFKRNQLSLTHEGYLGICRLMKLRELDLSSNA-LTSLPYCLGNLTHLRTLDLSNNQ 392

Query:   239 LTENLSSSPLMHLTSI-ELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIE-SS 296
             L  NLSS  +  L S+ E L L +N+F          N ++L +F  + +   G I+  +
Sbjct:   393 LNGNLSSF-VSGLPSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVF--KLSSKVGVIQVQT 449

Query:   297 HSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTN 356
              SS  P FQL  + LS+   S G T+  FL HQ  L FV +S   + G FP+WL++NNT 
Sbjct:   450 ESSWAPLFQLKMLYLSNC--SLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTR 507

Query:   357 LRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAF 416
             L++I+L+ NSL+   +LP      +  LDIS N +   I  +IG V PNL F+  S N F
Sbjct:   508 LQTILLSGNSLT-KLQLPILVH-GLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHF 565

Query:   417 NGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXXXXXFSKKINL 476
              G+IPSS G+M SL  LD+S+N L G++P     GC++L              FSK  NL
Sbjct:   566 QGTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANL 625

Query:   477 TKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNH 536
             T L  L LDGN+F G + E L    +L  L ISDN  SG +P W+G IS L  + M  N 
Sbjct:   626 TGLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQ 685

Query:   537 LEGPIPSEFCQLDYLEILDLSKNNIAGR-PLNGAFSKCSYLLTLDLCNNRLNGNIPNWMG 595
             L+GP P    Q  ++E++D+S N+ +G  P N  F     L  L L NN   G +P  + 
Sbjct:   686 LKGPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFPS---LRELRLQNNEFTGLVPGNLF 741

Query:   596 RLSQLRYLILANNNFEGEVPXXXXXXXXXXXXXXSHNNFSGQIPPCLDNTSLHREEGYYD 655
             + + L  L L NNNF G++                +N+F   IP  +   S   E G  D
Sbjct:   742 KAAGLEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLS---EVGLLD 798

Query:   656 L--------IPTYRNEYDIVSYNVGPSMGEKETIDFT-TKERSYTYKGQPLESIHGLDLS 706
             L        IP+  ++    +     +M      DF+      +   G  L    G+   
Sbjct:   799 LSHNQFRGPIPSCFSKMSFGAEQNDRTMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNG 858

Query:   707 CNKLIGEI-----PSRI----GELIR-IHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYN 756
                    +      SR     G+++R +H L+LS N L+G IP+   +L+ + SL+LS N
Sbjct:   859 YQPKPATVVDFLTKSRYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSN 918

Query:   757 NLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIA 791
              LTG IP  + +L  L    +++N L G IP  +A
Sbjct:   919 RLTGSIPDSISKLKGLESLDLSNNKLDGSIPPALA 953

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 231/709 (32%), Positives = 347/709 (48%)

Query:   109 AYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSK 168
             A N+   SI    L + ++L  L +  N +D     K+ R L  L  LDLS  R  +GS 
Sbjct:   140 ASNKFNNSI-FHFLSAATSLTTLFLRSNNMDGSFPAKELRDLTNLELLDLSRNRF-NGSI 197

Query:   169 VLHSIGSFPSLKTLYLKSNNFAKTV------------TTTQGLCELAHLQELYIDHNDFI 216
              +  + S   LK L L  N F+ ++            +   G+CEL ++QEL +  N  +
Sbjct:   198 PIQELSSLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSGICELNNMQELDLSQNKLV 257

Query:   217 GSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNY 276
             G LP CL +LT LRVL +  N+LT  + SS L  L S+E L L +N F+   S     N 
Sbjct:   258 GHLPSCLTSLTGLRVLDLSSNKLTGTVPSS-LGSLQSLEYLSLFDNDFEGSFSFGSLANL 316

Query:   277 SKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVI 336
             S L +          ++  S SS  PKFQL+ I+L      +   +P FL HQ  L  V 
Sbjct:   317 SNLMVLKLCSKSSSLQV-LSESSWKPKFQLSVIALRS---CNMEKVPHFLLHQKDLRHVD 372

Query:   337 ISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIP 396
             +SD N+ G+ PSWLL NNT L+ ++L NN  +  F++P +S  N++ LD+S N      P
Sbjct:   373 LSDNNISGKLPSWLLANNTKLKVLLLQNNLFTS-FQIP-KSAHNLLFLDVSANDFNHLFP 430

Query:   397 VEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLE 456
               IG + P+L +L  S N F  ++PSS G+MN + Y+DLS N   G +P     GC+++ 
Sbjct:   431 ENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMA 490

Query:   457 YXXXXXXXXXXXXFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGS 516
                          F +  N T +  L +D N F G I + L +  +L+ L +S+N+++G 
Sbjct:   491 ILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGV 550

Query:   517 IPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYL 576
             IP+W+G +  L A+++ DN L+G IP        L++LDLS N+++G       S+   +
Sbjct:   551 IPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVV 610

Query:   577 LTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPXXXXXXXXXXXXXXSHNNFSG 636
             L L   +N+L+G IP+ +  L+ +  L L NN F G++P                NNF+G
Sbjct:   611 LLLQ--DNKLSGTIPDTL--LANVEILDLRNNRFSGKIPEFINIQNISILLLRG-NNFTG 665

Query:   637 QIPP--C-LDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYK 693
             QIP   C L N  L  +     L  T  +     S+  G      +  DF     S  + 
Sbjct:   666 QIPHQLCGLSNIQL-LDLSNNRLNGTIPSCLSNTSFGFGKECTSYD-YDFGISFPSDVFN 723

Query:   694 GQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFS---------- 743
             G    S+H  D S NK  G I  +   L+ +  L++     T T  + F+          
Sbjct:   724 GF---SLHQ-DFSSNKN-GGIYFK--SLLTLDPLSMDYKAATQT-KIEFATKHRYDAYMG 775

Query:   744 -NLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIA 791
              NL+ +  +DLS N L+G+IP     L  L    ++HNNLSG IP+ I+
Sbjct:   776 GNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSIS 824

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 253/876 (28%), Positives = 387/876 (44%)

Query:     7 SDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVE 66
             SDCC W+ V CNA +  VI ++L   ++    + N S+      L +LD S N+  G + 
Sbjct:    17 SDCCNWEGVTCNAKSGEVIELNLSCSSLHGRFHSNSSIRN-LHFLTTLDRSHNDFEGQIT 75

Query:    67 NEGLEKLSGLSNLKFLDLSHNSFXXXXXXXXXXXXXXXXXXXAYNRLEGSINIEELDSLS 126
             +     +  LS+L  LDLS+N F                   ++N+  G I    + +LS
Sbjct:    76 SS----IENLSHLTSLDLSYNRFSGQILNSIGNLSRLTSLDLSFNQFSGQIP-SSIGNLS 130

Query:   127 NLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKS 186
             +L  L +S N     + P     L  L FL LSG R     +   SIG   +L  L+L  
Sbjct:   131 HLTFLGLSGNRFFGQI-PSSIGNLSHLTFLGLSGNRFF--GQFPSSIGGLSNLTNLHLSY 187

Query:   187 NNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSS 246
             N ++  + ++ G   L+ L  LY+  N+F G +P    NL  L  L V  N+L  N  + 
Sbjct:   188 NKYSGQIPSSIG--NLSQLIVLYLSVNNFYGEIPSSFGNLNQLTRLDVSFNKLGGNFPNV 245

Query:   247 PLMHLTSIELLILSNNHFQIPMSLEP-FFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQ 305
              L++LT + ++ LSNN F    +L P   + S L  F+  +N   G   S    + P   
Sbjct:   246 -LLNLTGLSVVSLSNNKFT--GTLPPNITSLSNLMAFYASDNAFTGTFPS-FLFIIPS-- 299

Query:   306 LTSISLSDHGDSDGGTIPKF--LYHQHHLEFVIISDVNMRGEFPSWL--LEN-------- 353
             LT + LS  G+   GT+ +F  +    +L+++ I   N  G  PS +  L N        
Sbjct:   300 LTYLGLS--GNQLKGTL-EFGNISSPSNLQYLNIGSNNFIGPIPSSISKLINLQELGISH 356

Query:   354 -NTNLRSI---ILANNSLSGPFRLP--TRSR----------KNIIALDISYNKLQGHIPV 397
              NT  R +   I ++       RL   T +           K + +LD+S N +      
Sbjct:   357 LNTQCRPVDFSIFSHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDLSGNLVSATNKS 416

Query:   398 EIGKVLPNLGFLTISFNAFN-GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLE 456
              +    P+    ++  +       P      + L +LD+SNN++ G++P  L     NL 
Sbjct:   417 SVSSDPPSQSIQSLYLSGCGITDFPEILRTQHELGFLDVSNNKIKGQVPGWL-WTLPNLF 475

Query:   457 YXXXXXXXXXXXXFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGS 516
             Y               K   +    L    N+F G IP  +    SL  L +SDN+ SGS
Sbjct:   476 YLNLSNNTFIGFQRPTKPEPSMAYLLG-SNNNFTGKIPSFICELRSLYTLDLSDNNFSGS 534

Query:   517 IPTWMGNI-SFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSY 575
             IP  M N+ S L  + +  N+L G  P      + L  LD+  N + G+ L  +    S 
Sbjct:   535 IPRCMENLKSNLSELNLRQNNLSGGFPEHI--FESLRSLDVGHNQLVGK-LPRSLRFFSN 591

Query:   576 LLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPXXXXXXXXXXXXXXSHNNFS 635
             L  L++ +NR+N   P W+  L +L+ L+L +N F G  P              SHN+F+
Sbjct:   592 LEVLNVESNRINDMFPFWLSSLQKLQVLVLRSNAFHG--PINQALFPKLRIIDISHNHFN 649

Query:   636 GQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQ 695
             G +P     T    E      + TY +  + V+Y +G    +   +       S   +  
Sbjct:   650 GSLP-----TEYFVEWSRMSSLGTYEDGSN-VNY-LGSGYYQDSMVLMNKGVESELVR-- 700

Query:   696 PLESIH-GLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLS 754
              + +I+  +D S NK  GEIP  IG L  +H LNLS N  TG IP +  NL  +ESLD+S
Sbjct:   701 -ILTIYTAVDFSGNKFEGEIPKSIGLLKELHVLNLSNNAFTGHIPSSIGNLTALESLDVS 759

Query:   755 YNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPK 814
              N L G+IP  +  L+ L+    +HN L+G +P    QF T    S+EGN  L G  L +
Sbjct:   760 QNKLYGEIPQEIGNLSLLSYMNFSHNQLTGLVPGG-QQFLTQRCSSFEGNLGLFGSSLEE 818

Query:   815 ICNENR---SSTEAST-HDNEEDDNLIDMDSFYITF 846
             +C +     S  +  T    EED++LI   +  I F
Sbjct:   819 VCRDIHTPASHQQFETPQTEEEDEDLISWIAAAIGF 854

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 254/875 (29%), Positives = 396/875 (45%)

Query:     7 SDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVE 66
             SDCC W+ V CNA +  VI +DL   ++    + N S+      L +LDLS N+  G + 
Sbjct:    80 SDCCNWEGVTCNAKSGEVIELDLSCSSLHGRFHSNSSIRN-LHFLTTLDLSFNDFKGQIT 138

Query:    67 NEGLEKLSGLSNLKFLDLSHNSFXXXXXXXXXXXXXXXXXXXAYNRLEGSINIEELDSLS 126
             +     +  LS+L +LDLS N F                     N+  G      + +LS
Sbjct:   139 SS----IENLSHLTYLDLSSNHFSGQILNSIGNLSRLTYLNLFDNQFSGQAP-SSICNLS 193

Query:   127 NLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKS 186
             +L  LD+S N       P    GL  L  L L   +     ++  SIG+  +L TL L +
Sbjct:   194 HLTFLDLSYNRFFGQF-PSSIGGLSHLTTLSLFSNKF--SGQIPSSIGNLSNLTTLDLSN 250

Query:   187 NNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSS 246
             NNF+  + +  G   L+ L  L +  N+F+G +P    NL  L  L+V DN+L+ N  + 
Sbjct:   251 NNFSGQIPSFIG--NLSQLTFLGLFSNNFVGEIPSSFGNLNQLTRLYVDDNKLSGNFPNV 308

Query:   247 PLMHLTSIELLILSNNHFQIPMSLEP-FFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQ 305
              L++LT + LL LSNN F    +L P   + S L  F   +N   G   S   ++ P   
Sbjct:   309 -LLNLTGLSLLSLSNNKFT--GTLPPNITSLSNLMDFDASDNAFTGTFPSFLFTI-PS-- 362

Query:   306 LTSISLSDHGDSDGGTIPKF--LYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILA 363
             LT I L+  G+   GT+ +F  +    +L  + I + N  G  PS  +     L  + ++
Sbjct:   363 LTYIRLN--GNQLKGTL-EFGNISSPSNLYELDIGNNNFIGPIPS-SISKLVKLFRLDIS 418

Query:   364 NNSLSGPFRLPTRSR-KNIIALDISYNKLQGHIPVEIG-KVLPNLGFLTISFNAFNGSIP 421
             + +  GP      S  K+++ L+IS+      I +         L  L +S N  + +  
Sbjct:   419 HLNTQGPVDFSIFSHLKSLLDLNISHLNTTTRIDLNYFLSYFKRLLLLDLSGNHVSATNK 478

Query:   422 SSFGDMNS-LI------------------------YLDLSNNQLTGEIPEHLAMGCFNLE 456
             SS  D  S LI                        +LD+SNN++ G++P+ L      L 
Sbjct:   479 SSVSDPPSQLIQSLYLSGCGITEFPEFVRTQHELGFLDISNNKIKGQVPDWLWRLPI-LY 537

Query:   457 YXXXXXXXXXXXXFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGS 516
             Y               K   + L  L    N+FIG IP  +    SL  L +SDN+ +GS
Sbjct:   538 YVNLSNNTLIGFQRPSKPEPSLLYLLG-SNNNFIGKIPSFICGLRSLNTLDLSDNNFNGS 596

Query:   517 IPTWMGNI-SFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSY 575
             IP  MG++ S L  + +  NHL G +P +  ++  L  LD+  N + G+ L  + S  S 
Sbjct:   597 IPRCMGHLKSTLSVLNLRQNHLSGGLPKQIFEI--LRSLDVGHNQLVGK-LPRSLSFFST 653

Query:   576 LLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPXXXXXXXXXXXXXXSHNNFS 635
             L  L++ +NR+N   P W+  L +L+ L+L +N F G  P              SHN F+
Sbjct:   654 LEVLNVESNRINDTFPFWLSSLPKLQVLVLRSNAFHG--PIHEATFPELRIIDISHNRFN 711

Query:   636 GQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQ 695
             G +P     T    +  +  +    +NE       +G  +  ++++    K  +     +
Sbjct:   712 GTLP-----TEYFVK--WSAMSSLGKNEDQSNEKYMGSGLYYQDSMVLMNKGVAMELV-R 763

Query:   696 PLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSY 755
              L     +D S N+  GEIP  IG L  +  L+LS N  +G +P +  NL  +ESLD+S 
Sbjct:   764 ILTIYTAVDFSGNRFEGEIPKSIGLLKELLVLSLSNNAFSGHMPSSMGNLTALESLDVSK 823

Query:   756 NNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKI 815
             N LTG+IP  L +L+ LA    +HN L+G +P    QF T +  ++E N  L G  L ++
Sbjct:   824 NKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGG-QQFLTQNCSAFEDNLGLFGSSLEEV 882

Query:   816 CNENR---SSTEASTHDNEEDD-NLIDMDSFYITF 846
             C +     S  +  T + EE+D +LI   +  I F
Sbjct:   883 CRDIHTPASHQQFETPETEEEDEDLISWIAAAIGF 917

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 670 (240.9 bits), Expect = 5.0e-65, P = 5.0e-65
 Identities = 209/708 (29%), Positives = 334/708 (47%)

Query:   144 PKDYRGL--RKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCE 201
             P D+RG+     R  ++   R++   ++   I     L+ L L+SN+F  T+ T+   C 
Sbjct:    57 PCDWRGVGCTNHRVTEIRLPRLQLSGRISDRISGLRMLRKLSLRSNSFNGTIPTSLAYC- 115

Query:   202 LAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSN 261
                L  +++ +N   G LP  + NLTSL V +V  N+L+  +   P+   +S++ L +S+
Sbjct:   116 -TRLLSVFLQYNSLSGKLPPAMRNLTSLEVFNVAGNRLSGEI---PVGLPSSLQFLDISS 171

Query:   262 NHF--QIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTP------KFQL------T 307
             N F  QIP  L    N ++L++ +   NQ+ GEI +S  +L         F L      +
Sbjct:   172 NTFSGQIPSGLA---NLTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPS 228

Query:   308 SIS-------LSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSI 360
             +IS       LS   +  GG IP        LE + +S+ N  G  P + L  NT+L  +
Sbjct:   229 AISNCSSLVHLSASENEIGGVIPAAYGALPKLEVLSLSNNNFSGTVP-FSLFCNTSLTIV 287

Query:   361 ILANNSLSGPFRLPTRS--RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNG 418
              L  N+ S   R  T +  R  +  LD+  N++ G  P+ +  +L +L  L +S N F+G
Sbjct:   288 QLGFNAFSDIVRPETTANCRTGLQVLDLQENRISGRFPLWLTNIL-SLKNLDVSGNLFSG 346

Query:   419 SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXXXXXFSKKINLTK 478
              IP   G++  L  L L+NN LTGEIP  +   C +L+                   +  
Sbjct:   347 EIPPDIGNLKRLEELKLANNSLTGEIPVEIKQ-CGSLDVLDFEGNSLKGQIPEFLGYMKA 405

Query:   479 LKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLE 538
             LK L+L  N F G +P S+ N   L+ L + +N+++GS P  +  ++ L  + +  N   
Sbjct:   406 LKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFS 465

Query:   539 GPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLS 598
             G +P     L  L  L+LS N  +G  +  +      L  LDL    ++G +P  +  L 
Sbjct:   466 GAVPVSISNLSNLSFLNLSGNGFSGE-IPASVGNLFKLTALDLSKQNMSGEVPVELSGLP 524

Query:   599 QLRYLILANNNFEGEVPXXXXXXXXXXXXXXSHNNFSGQIPPCLDNTSLHREEGYYDLIP 658
              ++ + L  NNF G VP              S N+FSG+IP            G+  L+ 
Sbjct:   525 NVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTF---------GFLRLLV 575

Query:   659 TYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQ-P-----LESIHGLDLSCNKLIG 712
             +     + +S ++ P +G    ++   + RS    G  P     L  +  LDL  N L G
Sbjct:   576 SLSLSDNHISGSIPPEIGNCSALE-VLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSG 634

Query:   713 EIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNA- 771
             EIP  I +   +++L+L  N+L+G IP +FS L  +  +DLS NNLTG+IP  L  +++ 
Sbjct:   635 EIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSN 694

Query:   772 LAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNEN 819
             L  F V+ NNL G+IP  +      +   + GN  LCG PL + C  +
Sbjct:   695 LVYFNVSSNNLKGEIPASLGSRIN-NTSEFSGNTELCGKPLNRRCESS 741

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_III000165 hypothetical protein (1014 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	892
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-57
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-47
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-44
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-32
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.004
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  214 bits (546), Expect = 1e-57
 Identities = 171/567 (30%), Positives = 263/567 (46%), Gaps = 45/567 (7%)

Query: 245 SSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKF 304
           SS +  L  I+ + LSNN    P+  + F   S L+  +   N   G I           
Sbjct: 86  SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETL 145

Query: 305 QLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILAN 364
            L++  LS       G IP  +     L+ + +    + G+ P+ L  N T+L  + LA+
Sbjct: 146 DLSNNMLS-------GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLAS 197

Query: 365 NSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSF 424
           N L G         K++  + + YN L G IP EIG  L +L  L + +N   G IPSS 
Sbjct: 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSL 256

Query: 425 GDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNL 484
           G++ +L YL L  N+L+G IP  +      L  L LS+NSL G++    I L  L+ L+L
Sbjct: 257 GNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315

Query: 485 DGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSE 544
             N+F G IP +L++   LQ L +  N  SG IP  +G  + L  + +  N+L G IP  
Sbjct: 316 FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Query: 545 FCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLI 604
            C    L  L L  N++ G  +  +   C  L  + L +N  +G +P+   +L  + +L 
Sbjct: 376 LCSSGNLFKLILFSNSLEGE-IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434

Query: 605 LANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEY 664
           ++NNN +G +  R   +  L++L L+ N F G +P    +  L                 
Sbjct: 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRL----------------- 477

Query: 665 DIVSYNVGPSMGEKETIDFTTKERSYTY--KGQPLESIHGLDLSCNKLIGEIPSRIGELI 722
                         E +D +  + S     K   L  +  L LS NKL GEIP  +    
Sbjct: 478 --------------ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK 523

Query: 723 RIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNL 782
           ++ +L+LS N L+G IP +FS +  +  LDLS N L+G+IP  L  + +L    ++HN+L
Sbjct: 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Query: 783 SGKIPERIAQFATFDEDSYEGNPFLCG 809
            G +P   A F   +  +  GN  LCG
Sbjct: 584 HGSLPSTGA-FLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  183 bits (466), Expect = 1e-47
 Identities = 184/638 (28%), Positives = 281/638 (44%), Gaps = 129/638 (20%)

Query: 5   SYSDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNF---------------------- 42
           S +D C WQ + CN  +SRV++IDL   NI+  +                          
Sbjct: 53  SSADVCLWQGITCN-NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPD 111

Query: 43  SLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSS 102
            +FT    L  L+LS NN  G +          + NL+ LDLS+N  +  + + +   SS
Sbjct: 112 DIFTTSSSLRYLNLSNNNFTGSIPR------GSIPNLETLDLSNNMLSGEIPNDIGSFSS 165

Query: 103 LKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLR 162
           LK L L  N L G I    L +L++LE L ++ N+                    L G  
Sbjct: 166 LKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQ--------------------LVG-- 202

Query: 163 IRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQG-LCELAHLQELYIDHNDFIGSLPW 221
                ++   +G   SLK +YL  NN +  +    G L  L HL  +Y   N+  G +P 
Sbjct: 203 -----QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY---NNLTGPIPS 254

Query: 222 CLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKI 281
            L NL +L+ L +  N+L+                         IP S+   F+  K   
Sbjct: 255 SLGNLKNLQYLFLYQNKLSG-----------------------PIPPSI---FSLQK--- 285

Query: 282 FHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVN 341
                                   L S+ LSD  +S  G IP+ +    +LE + +   N
Sbjct: 286 ------------------------LISLDLSD--NSLSGEIPELVIQLQNLEILHLFSNN 319

Query: 342 MRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGK 401
             G+ P   L +   L+ + L +N  SG          N+  LD+S N L G IP    +
Sbjct: 320 FTGKIPV-ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP----E 374

Query: 402 VLPNLGFLT--ISF-NAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL 458
            L + G L   I F N+  G IP S G   SL  + L +N  +GE+P         L Y 
Sbjct: 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK--LPLVYF 432

Query: 459 L-LSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSI 517
           L +SNN+LQG++ S+K ++  L+ L+L  N F GG+P+S      L+ L +S N  SG++
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAV 491

Query: 518 PTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLL 577
           P  +G++S L  + + +N L G IP E      L  LDLS N ++G+ +  +FS+   L 
Sbjct: 492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ-IPASFSEMPVLS 550

Query: 578 TLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVP 615
            LDL  N+L+G IP  +G +  L  + +++N+  G +P
Sbjct: 551 QLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  173 bits (439), Expect = 3e-44
 Identities = 144/432 (33%), Positives = 216/432 (50%), Gaps = 34/432 (7%)

Query: 381 IIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSS-FGDMNSLIYLDLSNNQ 439
           ++++D+S   + G I   I + LP +  + +S N  +G IP   F   +SL YL+LSNN 
Sbjct: 71  VVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN 129

Query: 440 LTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSN 499
            TG IP        NLE L LSNN L G++ +   + + LK L+L GN  +G IP SL+N
Sbjct: 130 FTGSIPRGSI---PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186

Query: 500 CSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKN 559
            +SL+ L ++ N + G IP  +G +  L  I +  N+L G IP E   L  L  LDL  N
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246

Query: 560 NIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLC 619
           N+ G P+  +      L  L L  N+L+G IP  +  L +L  L L++N+  GE+P  + 
Sbjct: 247 NLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305

Query: 620 QLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKE 679
           QLQ L +L L  NNF+G+IP  L  TSL R +    ++  + N++   S  +  ++G   
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVAL--TSLPRLQ----VLQLWSNKF---SGEIPKNLG--- 353

Query: 680 TIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIP 739
                 K  + T           LDLS N L GEIP  +     +  L L  N+L G IP
Sbjct: 354 ------KHNNLTV----------LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397

Query: 740 VTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDED 799
            +    R +  + L  N+ +G++P    +L  +    +++NNL G+I  R     +    
Sbjct: 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML 457

Query: 800 SYEGNPFLCGPP 811
           S   N F  G P
Sbjct: 458 SLARNKFFGGLP 469

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  140 bits (354), Expect = 6e-34
 Identities = 96/295 (32%), Positives = 143/295 (48%), Gaps = 32/295 (10%)

Query: 498 SNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDY-LEILDL 556
           +N S +  + +S  +ISG I + +  + ++  I + +N L GPIP +       L  L+L
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 557 SKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPL 616
           S NN  G  +         L TLDL NN L+G IPN +G  S L+ L L  N   G++P 
Sbjct: 126 SNNNFTG-SIPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182

Query: 617 RLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMG 676
            L  L  L  L L+ N   GQIP         RE G    +      Y+ +S  +   +G
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIP---------RELGQMKSLKWIYLGYNNLSGEIPYEIG 233

Query: 677 EKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTG 736
                               L S++ LDL  N L G IPS +G L  +  L L +N L+G
Sbjct: 234 G-------------------LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274

Query: 737 TIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIA 791
            IP +  +L+++ SLDLS N+L+G+IP  +++L  L +  +  NN +GKIP  + 
Sbjct: 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  136 bits (343), Expect = 1e-32
 Identities = 90/300 (30%), Positives = 139/300 (46%), Gaps = 44/300 (14%)

Query: 507 YISDNDISGSIPTWMG----NISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIA 562
           Y+S+ + S  +  W G    N S + +I +   ++ G I S   +L Y++ ++LS N ++
Sbjct: 47  YLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106

Query: 563 GRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQ 622
           G   +  F+  S L  L+L NN   G+IP   G +  L  L L+NN   GE+P  +    
Sbjct: 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFS 164

Query: 623 KLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETID 682
            L++LDL  N   G+IP  L N +                                 +++
Sbjct: 165 SLKVLDLGGNVLVGKIPNSLTNLT---------------------------------SLE 191

Query: 683 FTTKERSYTYKGQPLE-----SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGT 737
           F T   +      P E     S+  + L  N L GEIP  IG L  ++ L+L  NNLTG 
Sbjct: 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251

Query: 738 IPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFD 797
           IP +  NL+ ++ L L  N L+G IPP +  L  L    ++ N+LSG+IPE + Q    +
Sbjct: 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 83.3 bits (206), Expect = 2e-16
 Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 27/175 (15%)

Query: 700 IHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLT 759
           I GL L    L G IP+ I +L  + ++NLS N++ G IP +  ++  +E LDLSYN+  
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 760 GKIPPRLVELNALAVFTVAHNNLSGKIPE----RIAQFATFDEDSYEGNPFLCGPPLPKI 815
           G IP  L +L +L +  +  N+LSG++P     R+   A+F+   +  N  LCG P  + 
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLRA 536

Query: 816 CNENRSSTEASTHDNEEDDNLIDMDSFYITFTVSSVIVILGIIGVLWANPYWRHR 870
           C  + S                      I F VS   + L I  + W    W+ R
Sbjct: 537 CGPHLSVGA----------------KIGIAFGVSVAFLFLVICAMCW----WKRR 571

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.3 bits (154), Expect = 4e-10
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 16/112 (14%)

Query: 458 LLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSI 517
           L L N  L+G + +    L  L+ +NL GN   G IP SL + +SL+ L +S N  +GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 518 PTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGA 569
           P  +G ++ L  + +  N L G +P+                 + GR L+ A
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAA----------------LGGRLLHRA 518

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.3 bits (154), Expect = 4e-10
 Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNR 585
           F+D + + +  L G IP++  +L +L+ ++LS N+I G  +  +    + L  LDL  N 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNS 477

Query: 586 LNGNIPNWMGRLSQLRYLILANNNFEGEVP 615
            NG+IP  +G+L+ LR L L  N+  G VP
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 2e-09
 Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 7/110 (6%)

Query: 546 CQLD------YLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQ 599
           CQ D      +++ L L    + G  +    SK  +L +++L  N + GNIP  +G ++ 
Sbjct: 409 CQFDSTKGKWFIDGLGLDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS 467

Query: 600 LRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHR 649
           L  L L+ N+F G +P  L QL  LR+L+L+ N+ SG++P  L    LHR
Sbjct: 468 LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR 517

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 5e-09
 Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 362 LANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIP 421
           L N  L G         +++ ++++S N ++G+IP  +G +  +L  L +S+N+FNGSIP
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGSIP 483

Query: 422 SSFGDMNSLIYLDLSNNQLTGEIPEHL 448
            S G + SL  L+L+ N L+G +P  L
Sbjct: 484 ESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 2e-08
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 48  FQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLS 107
            + L+S++LSGN+I G +       L  +++L+ LDLS+NSFN S+  SL  L+SL+ L+
Sbjct: 441 LRHLQSINLSGNSIRGNIP----PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 108 LAYNRLEGSI 117
           L  N L G +
Sbjct: 497 LNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 1e-07
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 433 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGG 492
           L L N  L G IP  ++    +L+ + LS NS++G +     ++T L+ L+L  N F G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 493 IPESLSNCSSLQGLYISDNDISGSIPTWMG 522
           IPESL   +SL+ L ++ N +SG +P  +G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 68/240 (28%), Positives = 92/240 (38%), Gaps = 48/240 (20%)

Query: 46  TPFQQLESLDLSGNNIAGCVEN-----EGLEKLSGLSNLKFLDLSHNSF---NNSVLSSL 97
            P   L+ L LS N             +GL K  GL  L   DLS N+       VL SL
Sbjct: 48  RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQEL---DLSDNALGPDGCGVLESL 104

Query: 98  AGLSSLKNLSLAYNRLEGS---INIEEL-DSLSNLEGLDMSDNEIDNLVVPKDYRGLRKL 153
              SSL+ L L  N L      +  + L D    LE L +  N                 
Sbjct: 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR---------------- 148

Query: 154 RFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF--AKTVTTTQGLCELAHLQELYID 211
               L G      +K L +      LK L L +N    A      +GL    +L+ L ++
Sbjct: 149 ----LEGASCEALAKALRANRD---LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN 201

Query: 212 HNDF----IGSLPWCLANLTSLRVLHVPDNQLTE----NLSSSPLMHLTSIELLILSNNH 263
           +N        +L   LA+L SL VL++ DN LT+     L+S+ L    S+  L LS N 
Sbjct: 202 NNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.2 bits (117), Expect = 6e-06
 Identities = 62/209 (29%), Positives = 92/209 (44%), Gaps = 8/209 (3%)

Query: 426 DMNSLIYLDLSNNQLTGEIPEHLAMGC-FNLEYLLLSNNSLQGQLFSKKINLTKLKRLNL 484
            ++ L+ LDL +      +     +     L  L L+ N L+  +      LT L  L+L
Sbjct: 65  SLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDL 123

Query: 485 DGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSE 544
           D N+     P      S+L+ L +SDN I  S+P+ + N+  L  + +  N L   +P  
Sbjct: 124 DNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKL 181

Query: 545 FCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLI 604
              L  L  LDLS N I    L       S L  LDL NN +   + + +  L  L  L 
Sbjct: 182 LSNLSNLNNLDLSGNKI--SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLE 238

Query: 605 LANNNFEGEVPLRLCQLQKLRLLDLSHNN 633
           L+NN  E ++P  +  L  L  LDLS+N 
Sbjct: 239 LSNNKLE-DLPESIGNLSNLETLDLSNNQ 266

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.4 bits (115), Expect = 1e-05
 Identities = 67/233 (28%), Positives = 102/233 (43%), Gaps = 34/233 (14%)

Query: 50  QLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLA 109
            L SLDL+ N +        + +L  L+NL  LDL +N+  +         S+LK L L+
Sbjct: 94  PLPSLDLNLNRLRSN-----ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLS 148

Query: 110 YNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRD---- 165
            N++E       L +L NL+ LD+S N++ +L  PK    L  L  LDLSG +I D    
Sbjct: 149 DNKIE--SLPSPLRNLPNLKNLDLSFNDLSDL--PKLLSNLSNLNNLDLSGNKISDLPPE 204

Query: 166 ----------------GSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELY 209
                             ++L S+ +  +L  L L +N       +   L     L+ L 
Sbjct: 205 IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN---LETLD 261

Query: 210 IDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNN 262
           + +N  I S+   L +LT+LR L +  N L+  L    L+ L    LL L   
Sbjct: 262 LSNN-QISSIS-SLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLT 312

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 405 NLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNS 464
           NL  L +S N        +F  + +L  LDLS N LT  I      G  +L  L LS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 465 L 465
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 6e-05
 Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 551 LEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNF 610
           L+ LDLS N +   P +GAF     L  LDL  N L    P     L  LR L L+ NN 
Sbjct: 2   LKSLDLSNNRLTVIP-DGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 8e-05
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 50  QLESLDLSGNNIAGCVENEGLEK--LSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLS 107
            L+SLDLS N +        +      GL NLK LDLS N+  +    + +GL SL++L 
Sbjct: 1   NLKSLDLSNNRL------TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLD 54

Query: 108 LAYNRL 113
           L+ N L
Sbjct: 55  LSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 1e-04
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 342 MRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGK 401
           +RG  P+  +    +L+SI L+ NS+ G       S  ++  LD+SYN   G IP  +G+
Sbjct: 430 LRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488

Query: 402 VLPNLGFLTISFNAFNGSIPSSFG 425
            L +L  L ++ N+ +G +P++ G
Sbjct: 489 -LTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 6/77 (7%)

Query: 65  VENEGL-----EKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINI 119
           ++N+GL       +S L +L+ ++LS NS   ++  SL  ++SL+ L L+YN   GSI  
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP- 483

Query: 120 EELDSLSNLEGLDMSDN 136
           E L  L++L  L+++ N
Sbjct: 484 ESLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 52/137 (37%)

Query: 603 LILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRN 662
           L L N    G +P  + +L+ L+ ++LS N+  G IPP L + +                
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT---------------- 466

Query: 663 EYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELI 722
                                               S+  LDLS N   G IP  +G+L 
Sbjct: 467 ------------------------------------SLEVLDLSYNSFNGSIPESLGQLT 490

Query: 723 RIHTLNLSRNNLTGTIP 739
            +  LNL+ N+L+G +P
Sbjct: 491 SLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 26/56 (46%), Positives = 30/56 (53%)

Query: 703 LDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNL 758
           LDLS N+L          L  +  L+LS NNLT   P  FS L  + SLDLS NNL
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.0 bits (104), Expect = 4e-04
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 29/119 (24%)

Query: 128 LEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSN 187
           ++GL + DN+     +P D   LR L+ ++LSG  IR    +  S+GS  SL+ L L   
Sbjct: 420 IDGLGL-DNQGLRGFIPNDISKLRHLQSINLSGNSIRGN--IPPSLGSITSLEVLDLS-- 474

Query: 188 NFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSS 246
                                   +N F GS+P  L  LTSLR+L++  N L+  + ++
Sbjct: 475 ------------------------YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 723 RIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPR-LVELNALAVFTVAHNN 781
            + +L+LS N LT      F  L  ++ LDLS NNLT  I P     L +L    ++ NN
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGNN 59

Query: 782 L 782
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 23/57 (40%), Positives = 26/57 (45%)

Query: 578 TLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNF 634
           +LDL NNRL          L  L+ L L+ NN     P     L  LR LDLS NN 
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.0 bits (101), Expect = 6e-04
 Identities = 62/212 (29%), Positives = 94/212 (44%), Gaps = 30/212 (14%)

Query: 403 LPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSN 462
           L  L  L ++ N    +I        +L  LDL NN +T +IP  + +   NL+ L LS+
Sbjct: 92  LLPLPSLDLNLNRLRSNISELLEL-TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSD 149

Query: 463 NSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMG 522
           N ++  L S   NL  LK L+L  N  +  +P+ LSN S+L  L +S N IS  +P  + 
Sbjct: 150 NKIE-SLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE 206

Query: 523 NISFLDAIIMPDNHL----------------------EGPIPSEFCQLDYLEILDLSKNN 560
            +S L+ + + +N +                         +P     L  LE LDLS N 
Sbjct: 207 LLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ 266

Query: 561 IAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPN 592
           I+     G+ +    L  LDL  N L+  +P 
Sbjct: 267 ISSISSLGSLTN---LRELDLSGNSLSNALPL 295

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 78  NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNE 137
           NLK LDLS+N        +  GL +LK L L+ N L  SI+ E    L +L  LD+S N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 138 I 138
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 7/64 (10%)

Query: 429 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG---QLFSKKINLTKLKRLNLD 485
           +L  LDLSNN+LT  IP+    G  NL+ L LS N+L     + FS    L  L+ L+L 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS---GLPSLRSLDLS 56

Query: 486 GNHF 489
           GN+ 
Sbjct: 57  GNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 454 NLEYLLLSNNSLQG---QLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISD 510
           NL+ L LSNN L       F     L  LK L+L GN+     PE+ S   SL+ L +S 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFK---GLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57

Query: 511 NDI 513
           N++
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 58/294 (19%), Positives = 97/294 (32%), Gaps = 56/294 (19%)

Query: 376 RSRKNIIALDISYNKLQGHIPVEIGKVL---PNLGFLTISFN------AFNGSIPSSFGD 426
                +  L +  N L       +   L   P+L  L +S N          S+      
Sbjct: 20  PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79

Query: 427 MNSLIYLDLSNNQLTGEIPEHLA--MGCFNLEYLLLSNNSLQGQLFSKKI-----NLTKL 479
              L  LDLS+N L  +    L   +   +L+ L L+NN L  +               L
Sbjct: 80  GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPAL 139

Query: 480 KRLNLDGNHFIGGIPESLSN----CSSLQGLYISDNDISGS-IPTWMGNISFLDAIIMPD 534
           ++L L  N   G   E+L+        L+ L +++N I  + I           A  +  
Sbjct: 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRAL--------AEGLKA 191

Query: 535 NHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNW- 593
           N          C L+ L++ +    +     L    +    L  L+L +N    N+ +  
Sbjct: 192 N----------CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN----NLTDAG 237

Query: 594 --------MGRLSQLRYLILANNNFEGEVPLRLCQLQK----LRLLDLSHNNFS 635
                   +     L  L L+ N+   +    L ++      L  LDL  N F 
Sbjct: 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 102 SLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSG 160
           +LK+L L+ NRL   I       L NL+ LD+S N +   + P+ + GL  LR LDLSG
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNL-TSISPEAFSGLPSLRSLDLSG 57

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	892
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
PLN03150	623	hypothetical protein; Provisional	99.62
PLN03150	623	hypothetical protein; Provisional	99.3
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.29
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.26
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.23
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.19
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.18
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.08
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.03
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.02
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.02
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.98
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.93
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.8
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.77
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.73
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.64
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.48
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.44
KOG4341	483	consensus F-box protein containing LRR [General fu	98.41
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.36
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.36
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.34
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.33
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.29
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.11
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.08
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.94
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.91
KOG4341	483	consensus F-box protein containing LRR [General fu	97.91
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.78
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.77
PRK15386	426	type III secretion protein GogB; Provisional	97.76
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.75
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.73
PRK15386	426	type III secretion protein GogB; Provisional	97.62
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.58
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.49
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.44
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.43
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.23
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.76
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.6
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.58
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.35
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	95.71
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.48
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.32
KOG4308	478	consensus LRR-containing protein [Function unknown	93.05
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.99
KOG4308	478	consensus LRR-containing protein [Function unknown	89.98
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.05
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.63
smart00370	26	LRR Leucine-rich repeats, outliers.	87.5
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.5
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.06
smart00370	26	LRR Leucine-rich repeats, outliers.	86.97
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.97
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.49
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.18

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.9e-67  Score=646.49  Aligned_cols=558  Identities=34%  Similarity=0.523  Sum_probs=375.8

Q ss_pred             CCCCCcccceeEecCCCCcEEEEEcCCCccccccccCcccCCCCCCCcEEeCCCCccCCccccccccccCCCCCCCEEeC
Q 044158            5 SYSDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDL   84 (892)
Q Consensus         5 ~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~s~f~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~L   84 (892)
                      .++|||.|.||+|++ .++|+.|||+++.+.+.                           .+    ..|..+++|++|+|
T Consensus        53 ~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~---------------------------~~----~~~~~l~~L~~L~L  100 (968)
T PLN00113         53 SSADVCLWQGITCNN-SSRVVSIDLSGKNISGK---------------------------IS----SAIFRLPYIQTINL  100 (968)
T ss_pred             CCCCCCcCcceecCC-CCcEEEEEecCCCcccc---------------------------CC----hHHhCCCCCCEEEC
Confidence            367899999999985 57899999886533321                           11    22556666677777


Q ss_pred             CCCCCCCccccccc-CCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcC
Q 044158           85 SHNSFNNSVLSSLA-GLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRI  163 (892)
Q Consensus        85 s~n~i~~~~~~~l~-~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i  163 (892)
                      ++|.+++.+|..+. ++++|++|+|++|.+++.+|.   +.+++|++|+|++|.+++.                      
T Consensus       101 s~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~----------------------  155 (968)
T PLN00113        101 SNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGE----------------------  155 (968)
T ss_pred             CCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCccccc----------------------
Confidence            77666655555433 667777777777766655543   2345555555555555433                      


Q ss_pred             CCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCccCccccccCCCCCcEEeCCCCCccccc
Q 044158          164 RDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENL  243 (892)
Q Consensus       164 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  243 (892)
                           .+..++.+++|++|++++|.+.+..+.  .++++++|++|++++|.+.+.+|..++++++|+.|++++|.+.+.+
T Consensus       156 -----~p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  228 (968)
T PLN00113        156 -----IPNDIGSFSSLKVLDLGGNVLVGKIPN--SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI  228 (968)
T ss_pred             -----CChHHhcCCCCCEEECccCcccccCCh--hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC
Confidence                 223333333444444444433333332  3444444555555555444444444444445555554444443322


Q ss_pred             CCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCC
Q 044158          244 SSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIP  323 (892)
Q Consensus       244 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  323 (892)
                       +..+                                                                           
T Consensus       229 -p~~l---------------------------------------------------------------------------  232 (968)
T PLN00113        229 -PYEI---------------------------------------------------------------------------  232 (968)
T ss_pred             -ChhH---------------------------------------------------------------------------
Confidence             2222                                                                           


Q ss_pred             ccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcC
Q 044158          324 KFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVL  403 (892)
Q Consensus       324 ~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l  403 (892)
                                                  +++++|++|++++|.+++..+..+..+++|++|++++|++.+.+|..+.. +
T Consensus       233 ----------------------------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l  283 (968)
T PLN00113        233 ----------------------------GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-L  283 (968)
T ss_pred             ----------------------------hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh-c
Confidence                                        22333333333333333222223333444555555555555555544433 4


Q ss_pred             CCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEe
Q 044158          404 PNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLN  483 (892)
Q Consensus       404 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  483 (892)
                      ++|++|++++|.+.+.+|..+.+++                         +|+.|++++|.+.+..|..+..+++|+.|+
T Consensus       284 ~~L~~L~Ls~n~l~~~~p~~~~~l~-------------------------~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  338 (968)
T PLN00113        284 QKLISLDLSDNSLSGEIPELVIQLQ-------------------------NLEILHLFSNNFTGKIPVALTSLPRLQVLQ  338 (968)
T ss_pred             cCcCEEECcCCeeccCCChhHcCCC-------------------------CCcEEECCCCccCCcCChhHhcCCCCCEEE
Confidence            5555555555555544444444444                         455555555555444555555566666666


Q ss_pred             ecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCC
Q 044158          484 LDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG  563 (892)
Q Consensus       484 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  563 (892)
                      +++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++
T Consensus       339 L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~  418 (968)
T PLN00113        339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG  418 (968)
T ss_pred             CcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence            66666666666666666677777777777766666666666777777777777777777777777777777777777776


Q ss_pred             CcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCcccc
Q 044158          564 RPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLD  643 (892)
Q Consensus       564 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~  643 (892)
                       .+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|+++|.+|..+.
T Consensus       419 -~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~  496 (968)
T PLN00113        419 -ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLG  496 (968)
T ss_pred             -ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhh
Confidence             567777778888888888888888888777788888888888888888777755 458899999999999988887665


Q ss_pred             CCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCC
Q 044158          644 NTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIR  723 (892)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  723 (892)
                      ++                                                    +.|+.|++++|.+++.+|..++.+++
T Consensus       497 ~l----------------------------------------------------~~L~~L~Ls~N~l~~~~p~~~~~l~~  524 (968)
T PLN00113        497 SL----------------------------------------------------SELMQLKLSENKLSGEIPDELSSCKK  524 (968)
T ss_pred             hh----------------------------------------------------hccCEEECcCCcceeeCChHHcCccC
Confidence            43                                                    35888999999999999999999999


Q ss_pred             CCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCccccccCCCCcccccC
Q 044158          724 IHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEG  803 (892)
Q Consensus       724 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~g  803 (892)
                      |++|+|++|.++|.+|..++++++|+.|||++|+++|.+|..+..+++|+.+++++|+++|.+|. .+++.++...++.|
T Consensus       525 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~  603 (968)
T PLN00113        525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAG  603 (968)
T ss_pred             CCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC-cchhcccChhhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999998 68888999999999


Q ss_pred             CCCCCCCC
Q 044158          804 NPFLCGPP  811 (892)
Q Consensus       804 N~~lc~~~  811 (892)
                      ||.+||.+
T Consensus       604 n~~lc~~~  611 (968)
T PLN00113        604 NIDLCGGD  611 (968)
T ss_pred             CccccCCc
Confidence            99999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.4e-58  Score=568.01  Aligned_cols=518  Identities=31%  Similarity=0.505  Sum_probs=444.1

Q ss_pred             CCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCccCcccccc-CCCCCcEEeCCCCCcccccCCCcccccccCcE
Q 044158          178 SLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLA-NLTSLRVLHVPDNQLTENLSSSPLMHLTSIEL  256 (892)
Q Consensus       178 ~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  256 (892)
                      +++.|++++|.+.+..+.  .+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+++.+ +  .+.+++|++
T Consensus        70 ~v~~L~L~~~~i~~~~~~--~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~-p--~~~l~~L~~  144 (968)
T PLN00113         70 RVVSIDLSGKNISGKISS--AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI-P--RGSIPNLET  144 (968)
T ss_pred             cEEEEEecCCCccccCCh--HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccccc-C--ccccCCCCE
Confidence            455555555555554433  455555555555555555555544433 5555555555555555433 1  123444555


Q ss_pred             EeccCccccCCCCchhhcCCCCccEEEccCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEE
Q 044158          257 LILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVI  336 (892)
Q Consensus       257 L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~  336 (892)
                      |++++|.+.+                                                      .+|..+..+++|++|+
T Consensus       145 L~Ls~n~~~~------------------------------------------------------~~p~~~~~l~~L~~L~  170 (968)
T PLN00113        145 LDLSNNMLSG------------------------------------------------------EIPNDIGSFSSLKVLD  170 (968)
T ss_pred             EECcCCcccc------------------------------------------------------cCChHHhcCCCCCEEE
Confidence            5555444332                                                      3455556677788888


Q ss_pred             ccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcC
Q 044158          337 ISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAF  416 (892)
Q Consensus       337 l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~  416 (892)
                      +++|.+.+.+|.. ++++++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+
T Consensus       171 L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l  248 (968)
T PLN00113        171 LGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNL  248 (968)
T ss_pred             CccCcccccCChh-hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCcee
Confidence            8888888888876 678999999999999998888888899999999999999999899988876 89999999999999


Q ss_pred             CccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcc
Q 044158          417 NGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPES  496 (892)
Q Consensus       417 ~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~  496 (892)
                      .+.+|..++++++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..
T Consensus       249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~  327 (968)
T PLN00113        249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA  327 (968)
T ss_pred             ccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence            999999999999999999999999988888774 7899999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCc
Q 044158          497 LSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYL  576 (892)
Q Consensus       497 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L  576 (892)
                      +..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++++.+|..+..+++|+.|++++|++.+ .+|..+..+++|
T Consensus       328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~~~~L  406 (968)
T PLN00113        328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG-EIPKSLGACRSL  406 (968)
T ss_pred             HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecc-cCCHHHhCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999998 778899999999


Q ss_pred             cEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccccccccccc
Q 044158          577 LTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDL  656 (892)
Q Consensus       577 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~  656 (892)
                      +.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++.|.+|..+.             
T Consensus       407 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-------------  473 (968)
T PLN00113        407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-------------  473 (968)
T ss_pred             CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-------------
Confidence            9999999999999999999999999999999999999999999999999999999999988876432             


Q ss_pred             ccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCc
Q 044158          657 IPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTG  736 (892)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  736 (892)
                                                              ..+|+.||+++|++++.+|..+..+++|+.|+|++|++++
T Consensus       474 ----------------------------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  513 (968)
T PLN00113        474 ----------------------------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG  513 (968)
T ss_pred             ----------------------------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCccee
Confidence                                                    1258899999999999999999999999999999999999


Q ss_pred             cccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCccccccCCCCcccccCCCCCCCCC
Q 044158          737 TIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPP  811 (892)
Q Consensus       737 ~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~  811 (892)
                      .+|..++++++|++|+|++|+++|.+|..+..+++|+.||+++|+++|.+|..+..+..+...++.+|+..+..|
T Consensus       514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            999999999999999999999999999999999999999999999999999988888888889999999876444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-38  Score=327.15  Aligned_cols=376  Identities=26%  Similarity=0.270  Sum_probs=286.6

Q ss_pred             CccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEE
Q 044158          380 NIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLL  459 (892)
Q Consensus       380 ~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~  459 (892)
                      .-+.||+++|++. .+....+..+++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+ ++...-...++.|+.||
T Consensus        79 ~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   79 QTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD  155 (873)
T ss_pred             ceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence            3456777777777 455455555777777777777776 56654444555777888877777 55555445677778888


Q ss_pred             ccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccC
Q 044158          460 LSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEG  539 (892)
Q Consensus       460 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  539 (892)
                      |+.|.++.+....|..-.++++|+|++|+|+..-...|.++.+|.+|.|++|+++...+..|.++++|+.|+|..|++.-
T Consensus       156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence            88887777666666666778888888888877666777777888888888888887777777778888888888888764


Q ss_pred             CCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCcccc
Q 044158          540 PIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLC  619 (892)
Q Consensus       540 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~  619 (892)
                      .---.|.++++|+.|.|..|.+..+. .++|..+.++++|+|+.|++...-..|+.++++|+.|++|+|.|..+.++.+.
T Consensus       236 ve~ltFqgL~Sl~nlklqrN~I~kL~-DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws  314 (873)
T KOG4194|consen  236 VEGLTFQGLPSLQNLKLQRNDISKLD-DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS  314 (873)
T ss_pred             ehhhhhcCchhhhhhhhhhcCccccc-Ccceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence            44556888888888888888887643 56788888888888888888877777888888888888888888877788888


Q ss_pred             CCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCc
Q 044158          620 QLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLES  699 (892)
Q Consensus       620 ~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  699 (892)
                      .+++|++|||++|+++..-+..+.                                                    .+..
T Consensus       315 ftqkL~~LdLs~N~i~~l~~~sf~----------------------------------------------------~L~~  342 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLDEGSFR----------------------------------------------------VLSQ  342 (873)
T ss_pred             hcccceeEeccccccccCChhHHH----------------------------------------------------HHHH
Confidence            888888888888888732222222                                                    2346


Q ss_pred             cceeeccCccccccCCccccccCCCCEEEccCccCCccccc---cccCCCCCCEEECCCCcCcccCCccccCCCCCCEEE
Q 044158          700 IHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPV---TFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFT  776 (892)
Q Consensus       700 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~  776 (892)
                      |+.|+|++|.+...--..|..+++|++|||++|.+++.|.+   .|..|++|+.|+|-+|+|..+-..+|.++..|+.||
T Consensus       343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld  422 (873)
T KOG4194|consen  343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD  422 (873)
T ss_pred             hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence            88888888888866666788888899999999988877764   377788999999999998865566888889999999


Q ss_pred             ccCCcccccCCccccccCCCCcccccCCCCCCCCCC
Q 044158          777 VAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPL  812 (892)
Q Consensus       777 ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~l  812 (892)
                      |.+|.+...-|+.+.++ .++...+..-.++|+|.+
T Consensus       423 L~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql  457 (873)
T KOG4194|consen  423 LGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQL  457 (873)
T ss_pred             CCCCcceeecccccccc-hhhhhhhcccceEEeccH
Confidence            99998888777766666 666666666778898865

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-37  Score=319.67  Aligned_cols=365  Identities=23%  Similarity=0.229  Sum_probs=238.3

Q ss_pred             CEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcC
Q 044158          358 RSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSN  437 (892)
Q Consensus       358 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~  437 (892)
                      +.|++++|.+...-...|..+++|+.+++.+|.++ .||..... ...|+.|+|.+|.|+....+++..++.|+.||||.
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            45666666666555555566666666666666666 66654332 44567777777776666666666667777777777


Q ss_pred             CcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCc
Q 044158          438 NQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSI  517 (892)
Q Consensus       438 n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  517 (892)
                      |.|+ ++|...|..-.++++|+|++|+|+..-.+.|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|++.-.-
T Consensus       159 N~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  159 NLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             chhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence            7766 666655555556777777777776666666666677777777777776555566666777777777777665333


Q ss_pred             cccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcC
Q 044158          518 PTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRL  597 (892)
Q Consensus       518 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l  597 (892)
                      --.|..+++|+.|.|..|++...-...|..+.++++|+|+.|+++... .+++.++++|+.|+|++|.|..+-++.+.-+
T Consensus       238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn-~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN-EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT  316 (873)
T ss_pred             hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh-cccccccchhhhhccchhhhheeecchhhhc
Confidence            445666777777777777776666666667777777777777766522 4456667777777777777766666666666


Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCC
Q 044158          598 SQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGE  677 (892)
Q Consensus       598 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (892)
                      ++|++|+|++|+++...+..|..+..|+.|.|++|.++..--..|                                   
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af-----------------------------------  361 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF-----------------------------------  361 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH-----------------------------------
Confidence            777777777777776666666667777777777776651000000                                   


Q ss_pred             cceeEeeecccccccCCCCcCccceeeccCccccccCCcc---ccccCCCCEEEccCccCCccccccccCCCCCCEEECC
Q 044158          678 KETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSR---IGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLS  754 (892)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs  754 (892)
                                       ..+.+|+.|||++|.+++.|-+.   |..+++|+.|+|.+|++.......|.++.+||.|||-
T Consensus       362 -----------------~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~  424 (873)
T KOG4194|consen  362 -----------------VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG  424 (873)
T ss_pred             -----------------HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCC
Confidence                             12345667777777776655432   6667777777777777775555667777777777777


Q ss_pred             CCcCcccCCccccCCCCCCEEEccC
Q 044158          755 YNNLTGKIPPRLVELNALAVFTVAH  779 (892)
Q Consensus       755 ~N~l~g~ip~~l~~l~~L~~l~ls~  779 (892)
                      +|.|..+-|.+|..+ .|+.|-+..
T Consensus       425 ~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  425 DNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             CCcceeecccccccc-hhhhhhhcc
Confidence            777777777777776 566665543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.2e-39  Score=323.54  Aligned_cols=338  Identities=28%  Similarity=0.413  Sum_probs=219.0

Q ss_pred             CCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcE
Q 044158          378 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY  457 (892)
Q Consensus       378 ~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~  457 (892)
                      ++.|+++|...|-+. .+|.+++. +.+|..|++..|++. ..| .|.++..|++|+++.|++. .+|+.....+.++.+
T Consensus       182 m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~v  256 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLV  256 (565)
T ss_pred             HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhccccccee
Confidence            344444444444444 56666654 566666666666665 344 5666666666666666665 666666556666666


Q ss_pred             EEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCC---CcEEE---
Q 044158          458 LLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISF---LDAII---  531 (892)
Q Consensus       458 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~---L~~L~---  531 (892)
                      ||+..|+++ ..|+.+.-+++|++||+++|.++ ..|..++++ +|+.|.+.+|.+.. +...+-+...   |++|.   
T Consensus       257 LDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~  332 (565)
T KOG0472|consen  257 LDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKI  332 (565)
T ss_pred             eeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhh
Confidence            666666666 34555666666666666666665 345556666 66666666666531 1111111100   00000   


Q ss_pred             ----CCCCc---------ccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCC--CccEEEccCCccCccCChhhhc
Q 044158          532 ----MPDNH---------LEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCS--YLLTLDLCNNRLNGNIPNWMGR  596 (892)
Q Consensus       532 ----L~~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~--~L~~L~L~~n~l~~~~p~~~~~  596 (892)
                          ++...         ..+..| ......+.+.|++++-+++..+ .+.|....  -....++++|++. .+|..+..
T Consensus       333 ~~dglS~se~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt~VP-dEVfea~~~~~Vt~VnfskNqL~-elPk~L~~  409 (565)
T KOG0472|consen  333 KDDGLSQSEGGTETAMTLPSESFP-DIYAIITTKILDVSDKQLTLVP-DEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVE  409 (565)
T ss_pred             ccCCCCCCcccccccCCCCCCccc-chhhhhhhhhhcccccccccCC-HHHHHHhhhcceEEEecccchHh-hhhhhhHH
Confidence                00000         001111 2234556788888888887533 22333221  2678888899887 67877766


Q ss_pred             CCCCCE-EecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCC
Q 044158          597 LSQLRY-LILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSM  675 (892)
Q Consensus       597 l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  675 (892)
                      +..+.+ +.+++|.+. .+|..++.+++|..|+|++|.+. .+|..++.+.                             
T Consensus       410 lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv-----------------------------  458 (565)
T KOG0472|consen  410 LKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLV-----------------------------  458 (565)
T ss_pred             HHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhh-----------------------------
Confidence            666554 445555554 78888888899999999888875 6666554332                             


Q ss_pred             CCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCC
Q 044158          676 GEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSY  755 (892)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~  755 (892)
                                             .|+.||+|+|.|. .+|..+..+..++.+-.++|++....|+.+.+|.+|..|||.+
T Consensus       459 -----------------------~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n  514 (565)
T KOG0472|consen  459 -----------------------RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN  514 (565)
T ss_pred             -----------------------hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence                                   4888999999887 7888888888888888888999877777799999999999999


Q ss_pred             CcCcccCCccccCCCCCCEEEccCCccc
Q 044158          756 NNLTGKIPPRLVELNALAVFTVAHNNLS  783 (892)
Q Consensus       756 N~l~g~ip~~l~~l~~L~~l~ls~N~l~  783 (892)
                      |.+. .||..++++++|++|++++|+++
T Consensus       515 Ndlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  515 NDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             Cchh-hCChhhccccceeEEEecCCccC
Confidence            9998 78889999999999999999997

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=5.7e-39  Score=318.65  Aligned_cols=479  Identities=24%  Similarity=0.301  Sum_probs=325.7

Q ss_pred             CCCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCC
Q 044158           48 FQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSN  127 (892)
Q Consensus        48 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~  127 (892)
                      -.-|+.|++++|.+....+     .+.++..|++|++++|++. ..|++++.+..++.|+.++|.+. .+|. ++..+.+
T Consensus        44 qv~l~~lils~N~l~~l~~-----dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~  115 (565)
T KOG0472|consen   44 QVDLQKLILSHNDLEVLRE-----DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLIS  115 (565)
T ss_pred             hcchhhhhhccCchhhccH-----hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhh
Confidence            3456778888887765443     3677888888888888887 56788888888888888888887 6776 7888888


Q ss_pred             CCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcE
Q 044158          128 LEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQE  207 (892)
Q Consensus       128 L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~  207 (892)
                      |++|+.++|.+...  +..++.+..|..++..+|++..   .|.++..+.+|..+++.+|++....+.  .+ .++.|++
T Consensus       116 l~~l~~s~n~~~el--~~~i~~~~~l~dl~~~~N~i~s---lp~~~~~~~~l~~l~~~~n~l~~l~~~--~i-~m~~L~~  187 (565)
T KOG0472|consen  116 LVKLDCSSNELKEL--PDSIGRLLDLEDLDATNNQISS---LPEDMVNLSKLSKLDLEGNKLKALPEN--HI-AMKRLKH  187 (565)
T ss_pred             hhhhhccccceeec--CchHHHHhhhhhhhcccccccc---CchHHHHHHHHHHhhccccchhhCCHH--HH-HHHHHHh
Confidence            88888888888776  3447788888888888888876   566777777888888888877665554  23 3777777


Q ss_pred             EEccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCc
Q 044158          208 LYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGREN  287 (892)
Q Consensus       208 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~  287 (892)
                      ||...|.+. .+|..++.+.+|..|++..|++..   ...|..|..|++++++.|.+.                      
T Consensus       188 ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~---lPef~gcs~L~Elh~g~N~i~----------------------  241 (565)
T KOG0472|consen  188 LDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF---LPEFPGCSLLKELHVGENQIE----------------------  241 (565)
T ss_pred             cccchhhhh-cCChhhcchhhhHHHHhhhccccc---CCCCCccHHHHHHHhcccHHH----------------------
Confidence            777777654 556667777777777777777753   225566666666666655443                      


Q ss_pred             cccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcC
Q 044158          288 QIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSL  367 (892)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l  367 (892)
                                                                               .+|+....+++++..|+++.|++
T Consensus       242 ---------------------------------------------------------~lpae~~~~L~~l~vLDLRdNkl  264 (565)
T KOG0472|consen  242 ---------------------------------------------------------MLPAEHLKHLNSLLVLDLRDNKL  264 (565)
T ss_pred             ---------------------------------------------------------hhHHHHhcccccceeeecccccc
Confidence                                                                     23333344455555555555554


Q ss_pred             cCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCC---CcEE-------ECcC
Q 044158          368 SGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNS---LIYL-------DLSN  437 (892)
Q Consensus       368 ~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~---L~~L-------~L~~  437 (892)
                      +. .|..+..+++|++||+++|.++ .+|..+++ + .|+.|.+.+|.+..+-. .+-+...   |++|       -++.
T Consensus       265 ke-~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn-l-hL~~L~leGNPlrTiRr-~ii~~gT~~vLKyLrs~~~~dglS~  339 (565)
T KOG0472|consen  265 KE-VPDEICLLRSLERLDLSNNDIS-SLPYSLGN-L-HLKFLALEGNPLRTIRR-EIISKGTQEVLKYLRSKIKDDGLSQ  339 (565)
T ss_pred             cc-CchHHHHhhhhhhhcccCCccc-cCCccccc-c-eeeehhhcCCchHHHHH-HHHcccHHHHHHHHHHhhccCCCCC
Confidence            42 2233334455556666666665 55555554 4 66666666665542111 1100000   0000       0000


Q ss_pred             Cc----CccccchhHh---hcCccCcEEEccCCccccccccccccc--CCCcEEeecCccCcCCCCcccccCCCCcEEEc
Q 044158          438 NQ----LTGEIPEHLA---MGCFNLEYLLLSNNSLQGQLFSKKINL--TKLKRLNLDGNHFIGGIPESLSNCSSLQGLYI  508 (892)
Q Consensus       438 n~----l~~~i~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L  508 (892)
                      ..    -.+..+...|   ....+.+.|+++.-+++....+.|..-  .-....+++.|++. ++|..+..++.+.+.-+
T Consensus       340 se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~  418 (565)
T KOG0472|consen  340 SEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLV  418 (565)
T ss_pred             CcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHH
Confidence            00    0000011111   123456777777777775444444322  23678888888887 67777777766655444


Q ss_pred             cCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCc
Q 044158          509 SDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNG  588 (892)
Q Consensus       509 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  588 (892)
                      ..|+..+-+|..+..+++|..|+|++|-+. .+|..++.+..|+.|+++.|++.  .+|..+..+..++.+-.++|++..
T Consensus       419 lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr--~lP~~~y~lq~lEtllas~nqi~~  495 (565)
T KOG0472|consen  419 LSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR--MLPECLYELQTLETLLASNNQIGS  495 (565)
T ss_pred             hhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc--cchHHHhhHHHHHHHHhccccccc
Confidence            444444478888899999999999999887 78889999999999999999987  457777777888888888899987


Q ss_pred             cCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCC
Q 044158          589 NIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS  635 (892)
Q Consensus       589 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  635 (892)
                      ..|+.+.++.+|++|||.+|.+. .+|..++++.+|++|++++|+|+
T Consensus       496 vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  496 VDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            77778999999999999999998 78999999999999999999997

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=4.5e-35  Score=320.40  Aligned_cols=201  Identities=26%  Similarity=0.326  Sum_probs=101.0

Q ss_pred             CCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEc
Q 044158          429 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYI  508 (892)
Q Consensus       429 ~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L  508 (892)
                      +|+++++++|+++ .+|+++ ..+.+|+.++..+|.++ .+|..+...++|+.|.+..|.+. .+|.....+++|++|+|
T Consensus       242 nl~~~dis~n~l~-~lp~wi-~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  242 NLQYLDISHNNLS-NLPEWI-GACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             cceeeecchhhhh-cchHHH-HhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence            4444444444444 444322 23444444444444442 33344444455555555555544 34444445555555555


Q ss_pred             cCCcCCCCccccccCCCC-CcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccC
Q 044158          509 SDNDISGSIPTWMGNISF-LDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLN  587 (892)
Q Consensus       509 ~~n~l~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~  587 (892)
                      ..|++....+..+..... |+.+..+.|++.....-.=...+.|+.|++.+|.++. ...+.+.+.+.|+.|+|++|++.
T Consensus       318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd-~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD-SCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc-cchhhhccccceeeeeecccccc
Confidence            555555332222222222 4444444444442211111123456666666666666 33335566666666666666665


Q ss_pred             ccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCC
Q 044158          588 GNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS  635 (892)
Q Consensus       588 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  635 (892)
                      ......+.++..|+.|+||+|+++ .+|..+..++.|++|...+|++.
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~  443 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL  443 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence            322235566666666666666666 55666666666666655555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=5e-35  Score=320.06  Aligned_cols=487  Identities=24%  Similarity=0.283  Sum_probs=328.2

Q ss_pred             CCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCC
Q 044158           50 QLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLE  129 (892)
Q Consensus        50 ~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~  129 (892)
                      .++.|+++.|.+-..+    ++...+.-+|+.||+++|.+. ..|..+..+++|+.|+++.|.+. .+|. ...++.+|+
T Consensus        22 ~~~~ln~~~N~~l~~p----l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~-s~~~~~~l~   94 (1081)
T KOG0618|consen   22 ALQILNLRRNSLLSRP----LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPS-SCSNMRNLQ   94 (1081)
T ss_pred             HHHhhhccccccccCc----hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCch-hhhhhhcch
Confidence            3777888877664433    234455556888888888776 45777888888888888888877 5664 777888888


Q ss_pred             EEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEE
Q 044158          130 GLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELY  209 (892)
Q Consensus       130 ~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~  209 (892)
                      +|.|.+|.+...  |..+..+++|++|+++.|.+..   +|..+..+..++.+..++|....      .++... ++.++
T Consensus        95 ~lnL~~n~l~~l--P~~~~~lknl~~LdlS~N~f~~---~Pl~i~~lt~~~~~~~s~N~~~~------~lg~~~-ik~~~  162 (1081)
T KOG0618|consen   95 YLNLKNNRLQSL--PASISELKNLQYLDLSFNHFGP---IPLVIEVLTAEEELAASNNEKIQ------RLGQTS-IKKLD  162 (1081)
T ss_pred             hheeccchhhcC--chhHHhhhcccccccchhccCC---CchhHHhhhHHHHHhhhcchhhh------hhcccc-chhhh
Confidence            888888877765  4457888888888888888765   56667777777777777772111      122222 77777


Q ss_pred             ccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCccc
Q 044158          210 IDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQI  289 (892)
Q Consensus       210 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~  289 (892)
                      +..|.+.+.++..+..++.  .|+|++|.+.    ...+..+++|+.|....|++..-     -..-++           
T Consensus       163 l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~----~~dls~~~~l~~l~c~rn~ls~l-----~~~g~~-----------  220 (1081)
T KOG0618|consen  163 LRLNVLGGSFLIDIYNLTH--QLDLRYNEME----VLDLSNLANLEVLHCERNQLSEL-----EISGPS-----------  220 (1081)
T ss_pred             hhhhhcccchhcchhhhhe--eeecccchhh----hhhhhhccchhhhhhhhcccceE-----EecCcc-----------
Confidence            7777777777766666666  6778777764    23456666777777666655410     011222           


Q ss_pred             cccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcC
Q 044158          290 FGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSG  369 (892)
Q Consensus       290 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~  369 (892)
                                                                ++.|+...|.+....+..   ...+|++++++.|.+++
T Consensus       221 ------------------------------------------l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l~~  255 (1081)
T KOG0618|consen  221 ------------------------------------------LTALYADHNPLTTLDVHP---VPLNLQYLDISHNNLSN  255 (1081)
T ss_pred             ------------------------------------------hheeeeccCcceeecccc---ccccceeeecchhhhhc
Confidence                                                      333333333333222111   23345666666666655


Q ss_pred             CCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHh
Q 044158          370 PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLA  449 (892)
Q Consensus       370 ~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~  449 (892)
                      .. .....+.+|+.++..+|+++ .+|..++. ..+|+.|.+..|.+. -+|...+.++.|++|+|..|++. .+|+.++
T Consensus       256 lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l  330 (1081)
T KOG0618|consen  256 LP-EWIGACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFL  330 (1081)
T ss_pred             ch-HHHHhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHH
Confidence            43 55556667777777777775 77777776 678888888888876 55666777888888888888887 7777666


Q ss_pred             hcCcc-CcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCc
Q 044158          450 MGCFN-LEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLD  528 (892)
Q Consensus       450 ~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~  528 (892)
                      .-... |..|+.+.|++.......=...+.|+.|++.+|.++...-+.+.+.++|+.|+|++|++.......+.+++.|+
T Consensus       331 ~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Le  410 (1081)
T KOG0618|consen  331 AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELE  410 (1081)
T ss_pred             hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhH
Confidence            54443 67777777777644322223456788888888888777666777788888888888888765556777888888


Q ss_pred             EEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccC-ChhhhcCCCCCEEeccc
Q 044158          529 AIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNI-PNWMGRLSQLRYLILAN  607 (892)
Q Consensus       529 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~  607 (892)
                      .|+|++|+++ .+|..+.++..|++|...+|++..  +| .+..++.|+.+|++.|+++... |.... -++|++||+++
T Consensus       411 eL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~--fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSG  485 (1081)
T KOG0618|consen  411 ELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS--FP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSG  485 (1081)
T ss_pred             HHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee--ch-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccC
Confidence            8888888887 567778888888888888888874  34 6777888888888888877442 32222 26888888888


Q ss_pred             ccccccCCccccCCCCCCEEEcCCC
Q 044158          608 NNFEGEVPLRLCQLQKLRLLDLSHN  632 (892)
Q Consensus       608 n~l~~~~~~~~~~l~~L~~L~Ls~N  632 (892)
                      |.-....-..+..++.+...++.-|
T Consensus       486 N~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  486 NTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             CcccccchhhhHHhhhhhheecccC
Confidence            8754344455666666666666655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.7e-34  Score=299.56  Aligned_cols=365  Identities=26%  Similarity=0.337  Sum_probs=209.3

Q ss_pred             CCccEEEccCCcCc-cccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcE
Q 044158          330 HHLEFVIISDVNMR-GEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGF  408 (892)
Q Consensus       330 ~~L~~L~l~~~~~~-~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~  408 (892)
                      +-.+-.++++|.+. +.+|.. ...++.++.|.|....+.. .|..++.+.+|++|.+++|++. .+..++.. +|.|+.
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~-v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~-Lp~LRs   82 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHD-VEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLI-SVHGELSD-LPRLRS   82 (1255)
T ss_pred             ceeecccccCCcCCCCcCchh-HHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhH-hhhhhhcc-chhhHH
Confidence            34455677777777 456655 4566777777776666552 3445556666666666666665 44444433 566666


Q ss_pred             EECcCCcCCc-cCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCc
Q 044158          409 LTISFNAFNG-SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGN  487 (892)
Q Consensus       409 L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  487 (892)
                      +.+..|++.. -+|..+..+..|+.||||+|++. ++|..+ ....++-+|+||+|+|..+.-..|.+++.|-.|||++|
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence            6666666542 34555556666666666666666 666655 34556666666666666555555566666666666666


Q ss_pred             cCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCccc-CCCcccccCCCCCcEEeCCCCccCCCcc
Q 044158          488 HFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLE-GPIPSEFCQLDYLEILDLSKNNIAGRPL  566 (892)
Q Consensus       488 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  566 (892)
                      ++. .+|+.+..+..|++|+|++|.+...-...+..+++|++|.+++.+=+ ..+|.++..+.+|..+|+|.|.+.  ..
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp--~v  237 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP--IV  237 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC--cc
Confidence            655 44555666666666666666655333333444555556666554321 245555556666666666666655  34


Q ss_pred             cccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCC-CCCCccccCC
Q 044158          567 NGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS-GQIPPCLDNT  645 (892)
Q Consensus       567 ~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-g~~p~~~~~~  645 (892)
                      |+.+.++++|+.|+|++|+++ .+.-..+...+|++|++|.|+++ .+|+.+++++.|+.|.+.+|+++ .-||+.++. 
T Consensus       238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK-  314 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK-  314 (1255)
T ss_pred             hHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhh-
Confidence            555556666666666666655 23333344455666666666665 55666666666666666666554 123333322 


Q ss_pred             cccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCC
Q 044158          646 SLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIH  725 (892)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  725 (892)
                                                                         +..|+.+..++|.+. ..|+.+..+..|+
T Consensus       315 ---------------------------------------------------L~~Levf~aanN~LE-lVPEglcRC~kL~  342 (1255)
T KOG0444|consen  315 ---------------------------------------------------LIQLEVFHAANNKLE-LVPEGLCRCVKLQ  342 (1255)
T ss_pred             ---------------------------------------------------hhhhHHHHhhccccc-cCchhhhhhHHHH
Confidence                                                               223555555555554 5555566666666


Q ss_pred             EEEccCccCCccccccccCCCCCCEEECCCCcCc
Q 044158          726 TLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLT  759 (892)
Q Consensus       726 ~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  759 (892)
                      .|.|++|++. ..|+.+.-++.|+.||+..|.--
T Consensus       343 kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  343 KLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             Hhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            6666666655 45556666666666666655443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.9e-33  Score=293.29  Aligned_cols=326  Identities=26%  Similarity=0.356  Sum_probs=271.2

Q ss_pred             hhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCC-CCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCC
Q 044158          351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQ-GHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNS  429 (892)
Q Consensus       351 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~  429 (892)
                      ++.+.+|++|.+.+|++... ...++.++.|+.+++..|++. ..||.++|. +..|..|||++|++. ..|..+..-++
T Consensus        51 L~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn  127 (1255)
T KOG0444|consen   51 LSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIVRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKN  127 (1255)
T ss_pred             HHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhhhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcC
Confidence            44555555555555555432 233455666777777777664 258999998 899999999999998 68888999999


Q ss_pred             CcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEcc
Q 044158          430 LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYIS  509 (892)
Q Consensus       430 L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~  509 (892)
                      +-.|+||+|+|. .||..+|.+++.|-.||||+|++. .+|+....+..|++|+|++|++.-.--..+..+++|++|.++
T Consensus       128 ~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms  205 (1255)
T KOG0444|consen  128 SIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS  205 (1255)
T ss_pred             cEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence            999999999998 999999999999999999999998 567788899999999999999864434556678889999999


Q ss_pred             CCcCC-CCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCc
Q 044158          510 DNDIS-GSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNG  588 (892)
Q Consensus       510 ~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  588 (892)
                      +.+-+ ..+|..+..+.+|..++++.|.+. ..|+.+.++++|++|+||+|+|+.+.  .......+|++|+++.|+++ 
T Consensus       206 ~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~--~~~~~W~~lEtLNlSrNQLt-  281 (1255)
T KOG0444|consen  206 NTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELN--MTEGEWENLETLNLSRNQLT-  281 (1255)
T ss_pred             cccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeee--ccHHHHhhhhhhccccchhc-
Confidence            87655 568999999999999999999998 78999999999999999999998644  34455679999999999998 


Q ss_pred             cCChhhhcCCCCCEEecccccccc-cCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccc
Q 044158          589 NIPNWMGRLSQLRYLILANNNFEG-EVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIV  667 (892)
Q Consensus       589 ~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  667 (892)
                      .+|+.+..++.|+.|.+.+|+++- -+|..++++..|+.+..++|.+. .+|+.++.+.                     
T Consensus       282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~---------------------  339 (1255)
T KOG0444|consen  282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCV---------------------  339 (1255)
T ss_pred             cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhH---------------------
Confidence            899999999999999999998762 37999999999999999999986 6777665443                     


Q ss_pred             cccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCcccc
Q 044158          668 SYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIP  739 (892)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  739 (892)
                                                     .|+.|.|++|.+. .+|+.+.-++.|+.|||..|.---..|
T Consensus       340 -------------------------------kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  340 -------------------------------KLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             -------------------------------HHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence                                           5888999999998 799999999999999999996442444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=9.1e-27  Score=232.03  Aligned_cols=388  Identities=24%  Similarity=0.286  Sum_probs=266.4

Q ss_pred             CCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcC-CcCccccchhHhhc
Q 044158          373 LPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSN-NQLTGEIPEHLAMG  451 (892)
Q Consensus       373 ~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~-n~l~~~i~~~~~~~  451 (892)
                      .+-.-.+..+.++|..|+|+ .||...|+.+++|+.|||++|+|+.+.|.+|.++++|..|-+.+ |+|+ .+|...|.+
T Consensus        61 VP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~g  138 (498)
T KOG4237|consen   61 VPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGG  138 (498)
T ss_pred             CcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhh
Confidence            33334456788999999998 89999999999999999999999999999999999988887766 8998 999999999


Q ss_pred             CccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCC------------CCccc
Q 044158          452 CFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDIS------------GSIPT  519 (892)
Q Consensus       452 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~  519 (892)
                      +..|+.|.+.-|++.....+.|..+++|..|.+++|.+.......|..+.+++.+.+..|.+.            ...|.
T Consensus       139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i  218 (498)
T KOG4237|consen  139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI  218 (498)
T ss_pred             HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence            999999999999999999999999999999999999988554458888999999988887731            11111


Q ss_pred             cccCCC-------------------------CCcEEECCCCcccCCCc-ccccCCCCCcEEeCCCCccCCCcccccccCC
Q 044158          520 WMGNIS-------------------------FLDAIIMPDNHLEGPIP-SEFCQLDYLEILDLSKNNIAGRPLNGAFSKC  573 (892)
Q Consensus       520 ~~~~~~-------------------------~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  573 (892)
                      .++...                         .+..-..+.+...+..| ..|..+++|++|+|++|+++++. +.+|.+.
T Consensus       219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~-~~aFe~~  297 (498)
T KOG4237|consen  219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE-DGAFEGA  297 (498)
T ss_pred             hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh-hhhhcch
Confidence            121111                         11111122233333333 35888999999999999999844 7899999


Q ss_pred             CCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCC-----ccccCCccc
Q 044158          574 SYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIP-----PCLDNTSLH  648 (892)
Q Consensus       574 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p-----~~~~~~~~~  648 (892)
                      ..+++|.|..|++...-...|.++..|+.|+|.+|+|+..-|..|..+.+|..|.+-.|++-..--     +|+..-...
T Consensus       298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~  377 (498)
T KOG4237|consen  298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVV  377 (498)
T ss_pred             hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCC
Confidence            999999999999987767788999999999999999998889999999999999999888752110     011100000


Q ss_pred             cc-----ccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccc-eeeccCccccccCCccccccC
Q 044158          649 RE-----EGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIH-GLDLSCNKLIGEIPSRIGELI  722 (892)
Q Consensus       649 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~  722 (892)
                      ..     ..+...++..+..+.-.... ++     +......    ...-....+.+. ....|+..+. .+|..+..  
T Consensus       378 ~~~~Cq~p~~~~~~~~~dv~~~~~~c~-~~-----ee~~~~~----s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP~--  444 (498)
T KOG4237|consen  378 GNPRCQSPGFVRQIPISDVAFGDFRCG-GP-----EELGCLT----SSPCPPPCTCLDTVVRCSNKLLK-LLPRGIPV--  444 (498)
T ss_pred             CCCCCCCCchhccccchhccccccccC-Cc-----cccCCCC----CCCCCCCcchhhhhHhhcccchh-hcCCCCCc--
Confidence            00     00000000000000000000 00     0000000    000001122222 3445555554 55554432  


Q ss_pred             CCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCC
Q 044158          723 RIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHN  780 (892)
Q Consensus       723 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N  780 (892)
                      ..++|++.+|.++ .+|.+  .+.+| .+|+|+|+++..--..|.++++|.+|-+|+|
T Consensus       445 d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  445 DVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            4567888888888 66666  56777 7888888888666677888888888888876

>PLN03210 Resistant to P

Probab=99.90  E-value=1.3e-22  Score=251.19  Aligned_cols=342  Identities=22%  Similarity=0.211  Sum_probs=237.7

Q ss_pred             cchhhhhcCCCCCEEEccCCcCc------CCCCCCCCCC-CCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCc
Q 044158          346 FPSWLLENNTNLRSIILANNSLS------GPFRLPTRSR-KNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNG  418 (892)
Q Consensus       346 ~p~~~~~~~~~L~~L~L~~n~l~------~~~~~~~~~~-~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~  418 (892)
                      +....|..+++|+.|.+..+...      ...+..+..+ .+|+.|++.++.+. .+|..+.  +.+|+.|++.+|.+. 
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~--~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR--PENLVKLQMQGSKLE-  624 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCC--ccCCcEEECcCcccc-
Confidence            33444778888888888655322      1223334333 46888888888776 7776652  678888888888876 


Q ss_pred             cCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccc
Q 044158          419 SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLS  498 (892)
Q Consensus       419 ~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~  498 (892)
                      .+|..+..+++|+.|+++++...+.+|.  +..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ 
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-  701 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-  701 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence            4666677788888888887754447775  3457888888888887666777888888888888888877666777655 


Q ss_pred             cCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCC-----c-ccccccC
Q 044158          499 NCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR-----P-LNGAFSK  572 (892)
Q Consensus       499 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~-~~~~~~~  572 (892)
                      ++++|+.|++++|...+.+|..   .++|+.|++++|.+. .+|..+ .+++|++|++.++....+     . .+..+..
T Consensus       702 ~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~  776 (1153)
T PLN03210        702 NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTML  776 (1153)
T ss_pred             CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhc
Confidence            6788888888888665555542   356788888888876 455544 567777777776432110     0 1112233


Q ss_pred             CCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccccccc
Q 044158          573 CSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEG  652 (892)
Q Consensus       573 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~  652 (892)
                      +++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..           
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-----------  844 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI-----------  844 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----------
Confidence            5678888888887777788888888888888888876555667655 6778888888877544333321           


Q ss_pred             ccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCc
Q 044158          653 YYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRN  732 (892)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  732 (892)
                                                                  .++++.|+|++|.++ .+|..+..+++|+.|+|++|
T Consensus       845 --------------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        845 --------------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             --------------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence                                                        124777888888887 57888888888888888874


Q ss_pred             -cCCccccccccCCCCCCEEECCCCc
Q 044158          733 -NLTGTIPVTFSNLRQVESLDLSYNN  757 (892)
Q Consensus       733 -~l~~~~p~~~~~l~~L~~LdLs~N~  757 (892)
                       +++ .+|..+..+++|+.+++++|.
T Consensus       880 ~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        880 NNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCcC-ccCcccccccCCCeeecCCCc
Confidence             454 577777888888888888774

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=1.8e-22  Score=249.93  Aligned_cols=341  Identities=20%  Similarity=0.257  Sum_probs=266.0

Q ss_pred             CCCCCCCCCccEEEccCCc------CCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccc
Q 044158          372 RLPTRSRKNIIALDISYNK------LQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIP  445 (892)
Q Consensus       372 ~~~~~~~~~L~~L~l~~n~------l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~  445 (892)
                      ...|..+++|+.|.+..+.      +...+|..+....++|+.|++.++.+. .+|..| ...+|++|++.+|++. .++
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~  627 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW  627 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence            3456778999999987654      233466666554467999999999886 567666 5689999999999987 777


Q ss_pred             hhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCC
Q 044158          446 EHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNIS  525 (892)
Q Consensus       446 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  525 (892)
                      ..+ ..+++|+.|+++++.....+| .+..+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+ +++
T Consensus       628 ~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~  704 (1153)
T PLN03210        628 DGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK  704 (1153)
T ss_pred             ccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence            665 478999999999886555666 47789999999999998888899999999999999999987666777765 789


Q ss_pred             CCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccC-------ccCChhhhcCC
Q 044158          526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLN-------GNIPNWMGRLS  598 (892)
Q Consensus       526 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~p~~~~~l~  598 (892)
                      +|+.|++++|...+.+|..   ..+|++|++++|.+..  +|..+ .+++|++|++.++...       ...+......+
T Consensus       705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~--lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE--FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc--ccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence            9999999999766666643   4578999999999875  34433 5788888888875321       11222333457


Q ss_pred             CCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCc
Q 044158          599 QLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEK  678 (892)
Q Consensus       599 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (892)
                      +|+.|++++|...+.+|..++++++|+.|++++|+..+.+|..+                                    
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------------------------------  822 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------------------------------  822 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC------------------------------------
Confidence            89999999998888899999999999999999987655666432                                    


Q ss_pred             ceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcC
Q 044158          679 ETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNL  758 (892)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l  758 (892)
                                       .+++|+.|++++|.....+|..   ..+|+.|+|++|.++ .+|.++..+++|+.|+|++|+-
T Consensus       823 -----------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~  881 (1153)
T PLN03210        823 -----------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNN  881 (1153)
T ss_pred             -----------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCC
Confidence                             1346888999987665566653   357899999999998 6888999999999999998543


Q ss_pred             cccCCccccCCCCCCEEEccCCc
Q 044158          759 TGKIPPRLVELNALAVFTVAHNN  781 (892)
Q Consensus       759 ~g~ip~~l~~l~~L~~l~ls~N~  781 (892)
                      -..+|..+..++.|+.++++++.
T Consensus       882 L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        882 LQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cCccCcccccccCCCeeecCCCc
Confidence            33688888899999999999874

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=2e-21  Score=222.02  Aligned_cols=40  Identities=28%  Similarity=0.412  Sum_probs=18.9

Q ss_pred             CCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCc
Q 044158          748 VESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPE  788 (892)
Q Consensus       748 L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~  788 (892)
                      |+.|++++|+|+ .+|..+.+++.|+.+++++|+|+|.+|.
T Consensus       424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            344444444444 3444444444444444444444444443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=3.4e-21  Score=220.18  Aligned_cols=65  Identities=26%  Similarity=0.368  Sum_probs=44.1

Q ss_pred             ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccC
Q 044158          699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVE  768 (892)
Q Consensus       699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~  768 (892)
                      .|+.|++++|.+++ +|...   .+|+.|++++|+|+ .+|..+.++++|+.|+|++|+|+|.+|..+..
T Consensus       403 ~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        403 ELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             CCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            35567777777763 55432   34666777777777 56777777777777777777777777766544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=1.5e-23  Score=209.20  Aligned_cols=218  Identities=25%  Similarity=0.218  Sum_probs=142.6

Q ss_pred             CCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCccccccc
Q 044158          391 LQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLF  470 (892)
Q Consensus       391 l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~  470 (892)
                      ..+.-|...|+.+++|++|++++|+++++.+.+|.+...+++|.|..|++. .+....|.++..|+.|+|.+|+|+...|
T Consensus       261 ~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~  339 (498)
T KOG4237|consen  261 PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAP  339 (498)
T ss_pred             cCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEec
Confidence            444678888888999999999999999999999999999999999999998 8888999999999999999999999999


Q ss_pred             ccccccCCCcEEeecCccCcCCC-----Cccc-----------ccCCCCcEEEccCCcCCCC---ccccccCCCCCcEEE
Q 044158          471 SKKINLTKLKRLNLDGNHFIGGI-----PESL-----------SNCSSLQGLYISDNDISGS---IPTWMGNISFLDAII  531 (892)
Q Consensus       471 ~~~~~l~~L~~L~L~~n~~~~~~-----~~~~-----------~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~L~  531 (892)
                      ..|..+..|.+|++-.|.+.-.-     .+++           .+-..++.+.+++..+...   .|+..+-        
T Consensus       340 ~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~--------  411 (498)
T KOG4237|consen  340 GAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGC--------  411 (498)
T ss_pred             ccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCC--------
Confidence            99999999999999888763110     0111           1112344444544433211   1111000        


Q ss_pred             CCCCcccCCCcccccCCCCCcEE-eCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccc
Q 044158          532 MPDNHLEGPIPSEFCQLDYLEIL-DLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNF  610 (892)
Q Consensus       532 L~~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l  610 (892)
                          .-++.-|   ..++-+.++ ..|+..++  .+|..+  ...-.++.+.+|.++ .+|..  .+.+| .+++++|++
T Consensus       412 ----~~s~~cP---~~c~c~~tVvRcSnk~lk--~lp~~i--P~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i  476 (498)
T KOG4237|consen  412 ----LTSSPCP---PPCTCLDTVVRCSNKLLK--LLPRGI--PVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRI  476 (498)
T ss_pred             ----CCCCCCC---CCcchhhhhHhhcccchh--hcCCCC--CchhHHHhcccchhc-ccCHH--HHhhh-hcccccCce
Confidence                0000001   122223222 22222332  222221  134567777777777 55554  44566 778888887


Q ss_pred             cccCCccccCCCCCCEEEcCCC
Q 044158          611 EGEVPLRLCQLQKLRLLDLSHN  632 (892)
Q Consensus       611 ~~~~~~~~~~l~~L~~L~Ls~N  632 (892)
                      ...--..|.++..|.+|-|+.|
T Consensus       477 ~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  477 SSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             ehhhcccccchhhhheeEEecC
Confidence            7555566777777777777765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=1.4e-19  Score=208.81  Aligned_cols=96  Identities=26%  Similarity=0.335  Sum_probs=42.2

Q ss_pred             CCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECc
Q 044158          357 LRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLS  436 (892)
Q Consensus       357 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~  436 (892)
                      ...|+++++.++... ..+  .+.++.|++++|+++ .+|..++   ++|++|++++|+++ .+|..+.  ++|+.|+++
T Consensus       180 ~~~L~L~~~~LtsLP-~~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        180 KTELRLKILGLTTIP-ACI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             ceEEEeCCCCcCcCC-ccc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            445555555554321 111  234555555555555 4444332   34555555555544 2333222  244555555


Q ss_pred             CCcCccccchhHhhcCccCcEEEccCCccc
Q 044158          437 NNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ  466 (892)
Q Consensus       437 ~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~  466 (892)
                      +|++. .+|..+.   .+|+.|++++|+++
T Consensus       250 ~N~L~-~LP~~l~---s~L~~L~Ls~N~L~  275 (754)
T PRK15370        250 INRIT-ELPERLP---SALQSLDLFHNKIS  275 (754)
T ss_pred             CCccC-cCChhHh---CCCCEEECcCCccC
Confidence            55544 4444331   23444444444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=3.3e-19  Score=205.61  Aligned_cols=202  Identities=25%  Similarity=0.351  Sum_probs=100.9

Q ss_pred             CccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEE
Q 044158          380 NIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLL  459 (892)
Q Consensus       380 ~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~  459 (892)
                      +.+.|+++++.++ .+|..+   .+.|+.|++++|+++. +|..+.  ++|+.|++++|+++ .+|..+.   .+|+.|+
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~  247 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEME  247 (754)
T ss_pred             CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEE
Confidence            4566777777776 566544   3467777777777763 444333  36777777777666 5665432   3566666


Q ss_pred             ccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccC
Q 044158          460 LSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEG  539 (892)
Q Consensus       460 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  539 (892)
                      +++|.+. .+|..+.  .+|+.|++++|++. .+|..+.  ++|+.|++++|++++                        
T Consensus       248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~------------------------  297 (754)
T PRK15370        248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT------------------------  297 (754)
T ss_pred             CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc------------------------
Confidence            6666555 2333321  34555555555544 2333222  244444444444442                        


Q ss_pred             CCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCcccc
Q 044158          540 PIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLC  619 (892)
Q Consensus       540 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~  619 (892)
                       +|..+.  ++|+.|++++|.++.+  |..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+ 
T Consensus       298 -LP~~lp--~sL~~L~Ls~N~Lt~L--P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l-  365 (754)
T PRK15370        298 -LPAHLP--SGITHLNVQSNSLTAL--PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL-  365 (754)
T ss_pred             -Ccccch--hhHHHHHhcCCccccC--Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh-
Confidence             222111  2345555555555432  2111  1345555555555542 343332  45555555555554 344333 


Q ss_pred             CCCCCCEEEcCCCcCC
Q 044158          620 QLQKLRLLDLSHNNFS  635 (892)
Q Consensus       620 ~l~~L~~L~Ls~N~l~  635 (892)
                       .++|+.|++++|+++
T Consensus       366 -p~~L~~LdLs~N~Lt  380 (754)
T PRK15370        366 -PPTITTLDVSRNALT  380 (754)
T ss_pred             -cCCcCEEECCCCcCC
Confidence             235555555555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=1.7e-19  Score=194.70  Aligned_cols=84  Identities=29%  Similarity=0.249  Sum_probs=43.0

Q ss_pred             EEECcCCcCccccchhHhhcCccCcEEEccCCccccc----ccccccccCCCcEEeecCccCcC------CCCcccccCC
Q 044158          432 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQ----LFSKKINLTKLKRLNLDGNHFIG------GIPESLSNCS  501 (892)
Q Consensus       432 ~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~------~~~~~~~~l~  501 (892)
                      .|+|..+.+++.--...+..+.+|+.|+++++.++..    ++..+...++++.++++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4566666665333333444556677777777766432    23334445556666666655442      1122344444


Q ss_pred             CCcEEEccCCcCCC
Q 044158          502 SLQGLYISDNDISG  515 (892)
Q Consensus       502 ~L~~L~L~~n~l~~  515 (892)
                      +|+.|++++|.+.+
T Consensus        82 ~L~~L~l~~~~~~~   95 (319)
T cd00116          82 GLQELDLSDNALGP   95 (319)
T ss_pred             ceeEEEccCCCCCh
Confidence            55555555555443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=1.6e-18  Score=187.14  Aligned_cols=211  Identities=25%  Similarity=0.307  Sum_probs=115.3

Q ss_pred             hccCCCCCcEEECcCCcCccccchhHhhcCcc---CcEEEccCCcccc----ccccccccc-CCCcEEeecCccCcCC--
Q 044158          423 SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFN---LEYLLLSNNSLQG----QLFSKKINL-TKLKRLNLDGNHFIGG--  492 (892)
Q Consensus       423 ~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~n~~~~~--  492 (892)
                      .+..+++|+.|++++|.+.+..+..+ ..+..   |+.|++++|.+++    .+...+..+ ++|+.|++++|.+++.  
T Consensus        76 ~l~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  154 (319)
T cd00116          76 GLTKGCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC  154 (319)
T ss_pred             HHHhcCceeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence            34445555555555555543222222 12222   5555555555542    122233344 5666666666666532  


Q ss_pred             --CCcccccCCCCcEEEccCCcCCCC----ccccccCCCCCcEEECCCCcccCC----CcccccCCCCCcEEeCCCCccC
Q 044158          493 --IPESLSNCSSLQGLYISDNDISGS----IPTWMGNISFLDAIIMPDNHLEGP----IPSEFCQLDYLEILDLSKNNIA  562 (892)
Q Consensus       493 --~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~  562 (892)
                        ++..+..+++|++|++++|.+++.    ++..+...++|+.|++++|.+++.    ++..+..+++|++|++++|.++
T Consensus       155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence              223445556677777777666632    223344455677777776666532    2334556677777777777776


Q ss_pred             CCccccccc----CCCCccEEEccCCccCc----cCChhhhcCCCCCEEeccccccccc----CCccccCC-CCCCEEEc
Q 044158          563 GRPLNGAFS----KCSYLLTLDLCNNRLNG----NIPNWMGRLSQLRYLILANNNFEGE----VPLRLCQL-QKLRLLDL  629 (892)
Q Consensus       563 ~~~~~~~~~----~~~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L  629 (892)
                      +..+.....    ..+.|+.|++++|.++.    .+...+..+++|+++++++|.+...    ....+... +.|+.+++
T Consensus       235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~  314 (319)
T cd00116         235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWV  314 (319)
T ss_pred             hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhccc
Confidence            422111111    23678888888887762    2334455667788888888887743    33333334 67778887


Q ss_pred             CCCcC
Q 044158          630 SHNNF  634 (892)
Q Consensus       630 s~N~l  634 (892)
                      .+|++
T Consensus       315 ~~~~~  319 (319)
T cd00116         315 KDDSF  319 (319)
T ss_pred             CCCCC
Confidence            77754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=1.7e-18  Score=153.20  Aligned_cols=166  Identities=30%  Similarity=0.496  Sum_probs=131.0

Q ss_pred             ccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEE
Q 044158          475 NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEIL  554 (892)
Q Consensus       475 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  554 (892)
                      .+..++.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|..+..+++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            4556666677777766 45556777777777777777776 56667777777777777777776 678888888888888


Q ss_pred             eCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcC
Q 044158          555 DLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNF  634 (892)
Q Consensus       555 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  634 (892)
                      |+.+|++..-.+|+-|..++.|+-|.|++|.+. .+|..++++++|+.|.++.|.+. ..|..++.+..|+.|.+.+|++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            888888887778888888888888888888887 77888888889999999888887 6888888888899999999988


Q ss_pred             CCCCCccccCCc
Q 044158          635 SGQIPPCLDNTS  646 (892)
Q Consensus       635 ~g~~p~~~~~~~  646 (892)
                      + .+|+.++++.
T Consensus       186 ~-vlppel~~l~  196 (264)
T KOG0617|consen  186 T-VLPPELANLD  196 (264)
T ss_pred             e-ecChhhhhhh
Confidence            7 7777777654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=6.8e-18  Score=149.41  Aligned_cols=167  Identities=26%  Similarity=0.464  Sum_probs=132.8

Q ss_pred             ccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCC
Q 044158          545 FCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKL  624 (892)
Q Consensus       545 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  624 (892)
                      +.++...+.|.||+|+++.  +|+.++.+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.++.|
T Consensus        29 Lf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             ccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            3455667788888888874  4667788888888888888887 67778888888888888888887 788888889999


Q ss_pred             CEEEcCCCcCCCC-CCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCcccee
Q 044158          625 RLLDLSHNNFSGQ-IPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGL  703 (892)
Q Consensus       625 ~~L~Ls~N~l~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  703 (892)
                      +.|||+.|+++.. +|..|.                                                    .++.|+.|
T Consensus       105 evldltynnl~e~~lpgnff----------------------------------------------------~m~tlral  132 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFF----------------------------------------------------YMTTLRAL  132 (264)
T ss_pred             hhhhccccccccccCCcchh----------------------------------------------------HHHHHHHH
Confidence            9999988887632 232221                                                    13357788


Q ss_pred             eccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCC
Q 044158          704 DLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELN  770 (892)
Q Consensus       704 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~  770 (892)
                      +|+.|.+. .+|.+++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+|+++ .+|..++++.
T Consensus       133 yl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~  196 (264)
T KOG0617|consen  133 YLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD  196 (264)
T ss_pred             HhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence            99999987 78889999999999999999887 78889999999999999999998 6777766543

>PLN03150 hypothetical protein; Provisional

Probab=99.62  E-value=1.7e-15  Score=175.06  Aligned_cols=119  Identities=34%  Similarity=0.606  Sum_probs=107.6

Q ss_pred             ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 044158          699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA  778 (892)
Q Consensus       699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls  778 (892)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+.++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCcccccc-CCCCcccccCCCCCCCCCCCCCCC
Q 044158          779 HNNLSGKIPERIAQF-ATFDEDSYEGNPFLCGPPLPKICN  817 (892)
Q Consensus       779 ~N~l~g~ip~~~~~~-~~~~~~~~~gN~~lc~~~l~~~c~  817 (892)
                      +|+++|.+|..++.. ......++.+|+++|+.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999865442 344567899999999977555664

>PLN03150 hypothetical protein; Provisional

Probab=99.30  E-value=7.2e-12  Score=145.06  Aligned_cols=114  Identities=28%  Similarity=0.475  Sum_probs=101.3

Q ss_pred             CCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccce
Q 044158          623 KLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHG  702 (892)
Q Consensus       623 ~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  702 (892)
                      .++.|+|++|.++|.+|..+..+                                                    ++|+.
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L----------------------------------------------------~~L~~  446 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKL----------------------------------------------------RHLQS  446 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCC----------------------------------------------------CCCCE
Confidence            46789999999999998876543                                                    36899


Q ss_pred             eeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCC-CCCCEEEccCCc
Q 044158          703 LDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVEL-NALAVFTVAHNN  781 (892)
Q Consensus       703 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~l~ls~N~  781 (892)
                      |+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..+..+ ..+..+++++|.
T Consensus       447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999998764 467889999998


Q ss_pred             ccccCCc
Q 044158          782 LSGKIPE  788 (892)
Q Consensus       782 l~g~ip~  788 (892)
                      ..+.+|.
T Consensus       527 ~lc~~p~  533 (623)
T PLN03150        527 GLCGIPG  533 (623)
T ss_pred             cccCCCC
Confidence            6655553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.29  E-value=1.1e-13  Score=145.74  Aligned_cols=177  Identities=29%  Similarity=0.476  Sum_probs=152.4

Q ss_pred             CCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCE
Q 044158          547 QLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRL  626 (892)
Q Consensus       547 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  626 (892)
                      .+.--...|++.|++..  +|..+..+..|+.+.|..|.+. .+|..+.++..|++|+|+.|+++ ..|..++.++ |+.
T Consensus        73 ~ltdt~~aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFSE--LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV  147 (722)
T ss_pred             cccchhhhhcccccccc--CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence            34445678999999984  5677788889999999999987 78999999999999999999998 7888898886 899


Q ss_pred             EEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeecc
Q 044158          627 LDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLS  706 (892)
Q Consensus       627 L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  706 (892)
                      |-+++|+++ .+|..++.                                                    ...|..||.|
T Consensus       148 li~sNNkl~-~lp~~ig~----------------------------------------------------~~tl~~ld~s  174 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGL----------------------------------------------------LPTLAHLDVS  174 (722)
T ss_pred             EEEecCccc-cCCccccc----------------------------------------------------chhHHHhhhh
Confidence            999999997 77766652                                                    2257789999


Q ss_pred             CccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCccccc
Q 044158          707 CNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGK  785 (892)
Q Consensus       707 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~  785 (892)
                      .|++. .+|..++.+.+|+.|++..|++. ..|.++..| .|..||+|+|+++ .||..|.+|+.|++|-|.+|+|..+
T Consensus       175 ~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  175 KNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             hhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence            99998 78999999999999999999999 566677755 4889999999999 8999999999999999999999854

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.26  E-value=1.2e-13  Score=145.27  Aligned_cols=188  Identities=27%  Similarity=0.450  Sum_probs=113.2

Q ss_pred             EccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCcc
Q 044158          507 YISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRL  586 (892)
Q Consensus       507 ~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l  586 (892)
                      |++.|++. .+|..+..+..|+.+.|..|.+. .+|..++++..|..|||+.|+++.  +|..+..|+ |+.|-+++|++
T Consensus        81 DlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-Lkvli~sNNkl  155 (722)
T KOG0532|consen   81 DLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH--LPDGLCDLP-LKVLIVSNNKL  155 (722)
T ss_pred             hccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc--CChhhhcCc-ceeEEEecCcc
Confidence            33333333 33333333333444444444443 445555555555555665555553  233333332 56666666666


Q ss_pred             CccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccccccccccccccccccccc
Q 044158          587 NGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDI  666 (892)
Q Consensus       587 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (892)
                      + .+|..++.+..|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|+.+..++                    
T Consensus       156 ~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp--------------------  212 (722)
T KOG0532|consen  156 T-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP--------------------  212 (722)
T ss_pred             c-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc--------------------
Confidence            5 55666666666667777777666 56666777777777777777765 4555444332                    


Q ss_pred             ccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccc---c
Q 044158          667 VSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTF---S  743 (892)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~  743 (892)
                                                       |..||+|+|+++ .||.+|.+|+.|++|-|.+|.|. ..|..+   |
T Consensus       213 ---------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kG  257 (722)
T KOG0532|consen  213 ---------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKG  257 (722)
T ss_pred             ---------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhcc
Confidence                                             667888888887 78888888888888888888888 566654   3


Q ss_pred             CCCCCCEEECCCCc
Q 044158          744 NLRQVESLDLSYNN  757 (892)
Q Consensus       744 ~l~~L~~LdLs~N~  757 (892)
                      ...-.++|+...++
T Consensus       258 kVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  258 KVHIFKYLSTQACQ  271 (722)
T ss_pred             ceeeeeeecchhcc
Confidence            33445667776664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.23  E-value=1.9e-11  Score=135.77  Aligned_cols=181  Identities=35%  Similarity=0.539  Sum_probs=104.9

Q ss_pred             CCCCCcEEeCCCCccCCCcccccccCCC-CccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCC
Q 044158          547 QLDYLEILDLSKNNIAGRPLNGAFSKCS-YLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLR  625 (892)
Q Consensus       547 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  625 (892)
                      .++.++.|++.+|.++.  ++....... +|+.|++++|++. .+|..++.+++|+.|++++|++. .+|...+..+.|+
T Consensus       114 ~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~  189 (394)
T COG4886         114 ELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN  189 (394)
T ss_pred             cccceeEEecCCccccc--Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence            33555666666666653  233333332 5666666666665 34455566666666666666666 4444444566666


Q ss_pred             EEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeec
Q 044158          626 LLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDL  705 (892)
Q Consensus       626 ~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  705 (892)
                      .|++++|+++ .+|....                                                    ....|+.+++
T Consensus       190 ~L~ls~N~i~-~l~~~~~----------------------------------------------------~~~~L~~l~~  216 (394)
T COG4886         190 NLDLSGNKIS-DLPPEIE----------------------------------------------------LLSALEELDL  216 (394)
T ss_pred             heeccCCccc-cCchhhh----------------------------------------------------hhhhhhhhhh
Confidence            6666666665 3333211                                                    0113556666


Q ss_pred             cCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCccccc
Q 044158          706 SCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGK  785 (892)
Q Consensus       706 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~  785 (892)
                      ++|.+. .++..+..+..+..|.+++|++. .++..++.+++++.|++++|+++ .++. +..+..++.|++++|.++..
T Consensus       217 ~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         217 SNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             cCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCcccccc
Confidence            666433 45556666666666666666665 33556666667777777777776 3333 66666777777777776655


Q ss_pred             CCc
Q 044158          786 IPE  788 (892)
Q Consensus       786 ip~  788 (892)
                      .|.
T Consensus       293 ~~~  295 (394)
T COG4886         293 LPL  295 (394)
T ss_pred             chh
Confidence            554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.19  E-value=1.4e-11  Score=115.92  Aligned_cols=129  Identities=36%  Similarity=0.459  Sum_probs=38.7

Q ss_pred             CCCCCcEEeCCCCccCCccccccccccC-CCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCC
Q 044158           47 PFQQLESLDLSGNNIAGCVENEGLEKLS-GLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSL  125 (892)
Q Consensus        47 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l  125 (892)
                      +..++++|+|++|.|+.+.      .++ .+.+|+.|+|++|.|+..  +.+..+++|++|++++|.++ .++......+
T Consensus        17 n~~~~~~L~L~~n~I~~Ie------~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~l   87 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE------NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNL   87 (175)
T ss_dssp             -------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-
T ss_pred             ccccccccccccccccccc------chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhC
Confidence            4445677777777665432      233 456677777777776642  34666677777777777766 4543122346


Q ss_pred             CCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccc-cccccCCCCCCEEEC
Q 044158          126 SNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKV-LHSIGSFPSLKTLYL  184 (892)
Q Consensus       126 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~l~~l~~L~~L~L  184 (892)
                      ++|++|++++|+|.....-..+..+++|++|++.+|.++..... ...+..+|+|+.||-
T Consensus        88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            66777777777666544333455666666666666666543111 122344555555543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=3.4e-12  Score=130.63  Aligned_cols=216  Identities=23%  Similarity=0.275  Sum_probs=136.6

Q ss_pred             CCCCCCCEEeCCCCCCCCccc-ccccCCCCCCEEecCCcccccCCCh-hhhcCCCCCCEEeCCCCCCCCccccccccCCC
Q 044158           74 SGLSNLKFLDLSHNSFNNSVL-SSLAGLSSLKNLSLAYNRLEGSINI-EELDSLSNLEGLDMSDNEIDNLVVPKDYRGLR  151 (892)
Q Consensus        74 ~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~Ls~n~l~~~i~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~  151 (892)
                      +++.+|+...|.++.+..... .....|++++.||||.|-+..--+. .....+++|+.|+|+.|++........-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            567778888887777653222 3556778888888888766532222 23456788888888888776543333334567


Q ss_pred             CCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCccCc-cccccCCCCCc
Q 044158          152 KLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSL-PWCLANLTSLR  230 (892)
Q Consensus       152 ~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~  230 (892)
                      .|+.|.++.|.++.. .+...+..+|+|+.|.|.+|........  ...-+..|++|||++|++.... -...+.++.|+
T Consensus       198 ~lK~L~l~~CGls~k-~V~~~~~~fPsl~~L~L~~N~~~~~~~~--~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWK-DVQWILLTFPSLEVLYLEANEIILIKAT--STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhheEEeccCCCCHH-HHHHHHHhCCcHHHhhhhcccccceecc--hhhhhhHHhhccccCCcccccccccccccccchh
Confidence            788888888887732 2334455678888888888752222211  3344567888888888765432 13456778888


Q ss_pred             EEeCCCCCcccccCCCc-----ccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCcccccc
Q 044158          231 VLHVPDNQLTENLSSSP-----LMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGE  292 (892)
Q Consensus       231 ~L~L~~n~l~~~~~~~~-----l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~  292 (892)
                      .|+++.+.+.+...++.     ...+++|++|++..|++..--....+..+++|+.+.+..+.+..+
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            88888887765322222     356778888888888775433444555666777777666666543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.15  E-value=5.9e-11  Score=131.78  Aligned_cols=180  Identities=34%  Similarity=0.532  Sum_probs=103.5

Q ss_pred             CCCcEEECCCCcccCCCcccccCCC-CCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEE
Q 044158          525 SFLDAIIMPDNHLEGPIPSEFCQLD-YLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYL  603 (892)
Q Consensus       525 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  603 (892)
                      +.++.+++.+|.++ .++....... +|+.|++++|++..  +|..+..+++|+.|++++|+++ .+|...+..++|+.|
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL  191 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence            34444444444444 2333333442 56666666666553  2234556666666666666665 344444455666666


Q ss_pred             ecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEe
Q 044158          604 ILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDF  683 (892)
Q Consensus       604 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (892)
                      ++++|++. .+|........|++|.+++|++. .++..+.+                                       
T Consensus       192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~---------------------------------------  230 (394)
T COG4886         192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN---------------------------------------  230 (394)
T ss_pred             eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhh---------------------------------------
Confidence            66666666 45554444555666666666422 12222211                                       


Q ss_pred             eecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCC
Q 044158          684 TTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIP  763 (892)
Q Consensus       684 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip  763 (892)
                                   +..+..+.+++|++. .+|..++.+++++.|++++|.++. ++. ++.+.+++.||+++|.++...|
T Consensus       231 -------------~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         231 -------------LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             -------------cccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccch
Confidence                         123444556666665 236667777778888888888873 333 7788888888888888886655


Q ss_pred             cc
Q 044158          764 PR  765 (892)
Q Consensus       764 ~~  765 (892)
                      ..
T Consensus       295 ~~  296 (394)
T COG4886         295 LI  296 (394)
T ss_pred             hh
Confidence            54

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=2.5e-11  Score=124.32  Aligned_cols=64  Identities=30%  Similarity=0.356  Sum_probs=28.8

Q ss_pred             cCCCCCEEEccCCcCcCCCC-CCCCCCCCccEEEccCCcCCCCCc-hhhhhcCCCCcEEECcCCcC
Q 044158          353 NNTNLRSIILANNSLSGPFR-LPTRSRKNIIALDISYNKLQGHIP-VEIGKVLPNLGFLTISFNAF  416 (892)
Q Consensus       353 ~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~i~-~~~~~~l~~L~~L~L~~n~~  416 (892)
                      ++.+|+++.|+++....... .....+++++.|||+.|-+....+ ..+...+|+|+.|+++.|.+
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl  184 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL  184 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc
Confidence            45556666666665543221 123344555555555554432111 12233344555555554444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.03  E-value=1.5e-11  Score=122.72  Aligned_cols=191  Identities=22%  Similarity=0.231  Sum_probs=85.5

Q ss_pred             CCCCCCEEecCCcccccCCCh---hhhcCCCCCCEEeCCCCCCCCccc------------cccccCCCCCcEEeCCCCcC
Q 044158           99 GLSSLKNLSLAYNRLEGSINI---EELDSLSNLEGLDMSDNEIDNLVV------------PKDYRGLRKLRFLDLSGLRI  163 (892)
Q Consensus        99 ~l~~L~~L~Ls~n~l~~~i~~---~~l~~l~~L~~L~L~~n~i~~~~~------------~~~~~~l~~L~~L~L~~n~i  163 (892)
                      .+++|++||||+|.+.-.-+.   ..+++++.|++|.|.+|.+.....            ......-++||++...+|++
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            444555555555544311111   123445555555555554432210            11123334566666666665


Q ss_pred             CCCc--cccccccCCCCCCEEECCCCCCCCc--cCCcccccCCCCCcEEEccCCcCccC----ccccccCCCCCcEEeCC
Q 044158          164 RDGS--KVLHSIGSFPSLKTLYLKSNNFAKT--VTTTQGLCELAHLQELYIDHNDFIGS----LPWCLANLTSLRVLHVP  235 (892)
Q Consensus       164 ~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~  235 (892)
                      .+..  .+...+...+.|+.+.++.|.+...  .....++..+++|++|||.+|.++..    +...+..+++|+.|+++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            5432  1233445555666666666554321  11122445556666666666655432    22334445556666666


Q ss_pred             CCCcccccCCC----cccccccCcEEeccCccccCC---CCchhhcCCCCccEEEccCccc
Q 044158          236 DNQLTENLSSS----PLMHLTSIELLILSNNHFQIP---MSLEPFFNYSKLKIFHGRENQI  289 (892)
Q Consensus       236 ~n~l~~~~~~~----~l~~l~~L~~L~L~~n~l~~~---~~~~~~~~l~~L~~l~l~~~~~  289 (892)
                      +|.+...-...    .-...++|+.|.+.+|.++..   .........+.|+.|++++|.+
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            66554311000    011245566666666554411   1111223344555555555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.02  E-value=1.4e-11  Score=122.97  Aligned_cols=241  Identities=22%  Similarity=0.265  Sum_probs=174.5

Q ss_pred             CcEEEEEcCCCcccc-ccccCcccCCCCCCCcEEeCCCCccCCccccc-------cccccCCCCCCCEEeCCCCCCCCcc
Q 044158           22 SRVIAIDLLSLNIAS-ALYLNFSLFTPFQQLESLDLSGNNIAGCVENE-------GLEKLSGLSNLKFLDLSHNSFNNSV   93 (892)
Q Consensus        22 ~~v~~l~L~~~~~~~-~~~~~~s~f~~~~~L~~L~Ls~n~i~~~~~~~-------~~~~~~~l~~L~~L~Ls~n~i~~~~   93 (892)
                      ..++.|+|+|+.+.- ....-...+++-++|+..++|.-. +|-....       ...++..+++|++||||+|-+....
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            469999999986531 122223456778899999998753 3322211       1134567889999999999886544


Q ss_pred             cc----cccCCCCCCEEecCCcccccCCChh-------------hhcCCCCCCEEeCCCCCCCCccc---cccccCCCCC
Q 044158           94 LS----SLAGLSSLKNLSLAYNRLEGSINIE-------------ELDSLSNLEGLDMSDNEIDNLVV---PKDYRGLRKL  153 (892)
Q Consensus        94 ~~----~l~~l~~L~~L~Ls~n~l~~~i~~~-------------~l~~l~~L~~L~L~~n~i~~~~~---~~~~~~l~~L  153 (892)
                      +.    .+..+..|++|.|.+|.+. .....             ..+.-++|+++....|++.....   ...|...+.|
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l  187 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL  187 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence            43    3568999999999999875 22111             23456899999999999876432   3457788999


Q ss_pred             cEEeCCCCcCCCCc--cccccccCCCCCCEEECCCCCCCCc--cCCcccccCCCCCcEEEccCCcCccCccccc-----c
Q 044158          154 RFLDLSGLRIRDGS--KVLHSIGSFPSLKTLYLKSNNFAKT--VTTTQGLCELAHLQELYIDHNDFIGSLPWCL-----A  224 (892)
Q Consensus       154 ~~L~L~~n~i~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-----~  224 (892)
                      +.+.++.|.|....  .....+..+++|++|||.+|.++..  ......++.+++|++|++++|.+.......+     .
T Consensus       188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~  267 (382)
T KOG1909|consen  188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE  267 (382)
T ss_pred             ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence            99999999986542  2446788999999999999988643  2223357788999999999999876544333     2


Q ss_pred             CCCCCcEEeCCCCCccccc---CCCcccccccCcEEeccCccc
Q 044158          225 NLTSLRVLHVPDNQLTENL---SSSPLMHLTSIELLILSNNHF  264 (892)
Q Consensus       225 ~l~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~L~L~~n~l  264 (892)
                      ..|+|++|.+.+|.++..-   ....+...+.|+.|+|++|.+
T Consensus       268 ~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  268 SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            3689999999999987421   122445689999999999988

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.02  E-value=3.6e-10  Score=106.43  Aligned_cols=83  Identities=28%  Similarity=0.319  Sum_probs=25.4

Q ss_pred             ccCCCCCcEEeCCCCccCCCcccccc-cCCCCccEEEccCCccCccCC-hhhhcCCCCCEEecccccccccC---Ccccc
Q 044158          545 FCQLDYLEILDLSKNNIAGRPLNGAF-SKCSYLLTLDLCNNRLNGNIP-NWMGRLSQLRYLILANNNFEGEV---PLRLC  619 (892)
Q Consensus       545 ~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~---~~~~~  619 (892)
                      +..++.|++|++++|+++.+  .+.+ ..+++|++|++++|++...-. ..+..+++|+.|+|.+|++...-   ...+.
T Consensus        60 l~~L~~L~~L~L~~N~I~~i--~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~  137 (175)
T PF14580_consen   60 LPGLPRLKTLDLSNNRISSI--SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIY  137 (175)
T ss_dssp             ----TT--EEE--SS---S---CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHH
T ss_pred             ccChhhhhhcccCCCCCCcc--ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHH
Confidence            33444455555555555432  1122 234555555555555543211 33445555666666666555221   11244


Q ss_pred             CCCCCCEEEc
Q 044158          620 QLQKLRLLDL  629 (892)
Q Consensus       620 ~l~~L~~L~L  629 (892)
                      .+|+|+.||-
T Consensus       138 ~lP~Lk~LD~  147 (175)
T PF14580_consen  138 KLPSLKVLDG  147 (175)
T ss_dssp             H-TT-SEETT
T ss_pred             HcChhheeCC
Confidence            5666666653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.98  E-value=1.6e-10  Score=112.30  Aligned_cols=60  Identities=35%  Similarity=0.435  Sum_probs=45.0

Q ss_pred             CCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCC
Q 044158          573 CSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS  635 (892)
Q Consensus       573 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  635 (892)
                      ...|+++||++|.|+ .+.+.+.-.|.++.|++|+|.+...  +.+..+++|+.||||+|.++
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH
Confidence            456778888888777 5566666678888888888888732  23777888888888888776

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.93  E-value=2.3e-10  Score=111.25  Aligned_cols=134  Identities=29%  Similarity=0.307  Sum_probs=86.0

Q ss_pred             hcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccC
Q 044158          122 LDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCE  201 (892)
Q Consensus       122 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~  201 (892)
                      +.....|+++||++|.|+.+  .+...-.|+++.|+++.|.+...    ..+..+++|++|||++|.++...-.   -.+
T Consensus       280 ~dTWq~LtelDLS~N~I~~i--DESvKL~Pkir~L~lS~N~i~~v----~nLa~L~~L~~LDLS~N~Ls~~~Gw---h~K  350 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQI--DESVKLAPKLRRLILSQNRIRTV----QNLAELPQLQLLDLSGNLLAECVGW---HLK  350 (490)
T ss_pred             cchHhhhhhccccccchhhh--hhhhhhccceeEEeccccceeee----hhhhhcccceEeecccchhHhhhhh---Hhh
Confidence            34456677777777777765  34466667777777777777643    4466677777777777766544322   334


Q ss_pred             CCCCcEEEccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccC
Q 044158          202 LAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQI  266 (892)
Q Consensus       202 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~  266 (892)
                      +.+++.|.|+.|.+.+.  ..++++-+|..||+++|+|..--....++++|-|+.+.+.+|.+.+
T Consensus       351 LGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  351 LGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            56677777777765422  2456666777777777776542223456667777777777776654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.80  E-value=7.9e-10  Score=122.73  Aligned_cols=225  Identities=25%  Similarity=0.244  Sum_probs=122.3

Q ss_pred             cccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCc
Q 044158          497 LSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYL  576 (892)
Q Consensus       497 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L  576 (892)
                      +..+++|+.|++.+|++... ...+..+++|++|++++|.|+...  .+..++.|+.|++++|.++.+.   .+..++.|
T Consensus        91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~---~~~~l~~L  164 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDIS---GLESLKSL  164 (414)
T ss_pred             cccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhcc---CCccchhh
Confidence            33444444444444444422 111334444555555555444322  2344445666666666666532   44456667


Q ss_pred             cEEEccCCccCccCC-hhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccc
Q 044158          577 LTLDLCNNRLNGNIP-NWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYD  655 (892)
Q Consensus       577 ~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~  655 (892)
                      +.+++++|++...-+ . ...+.+++.+.+.+|.+..  ...+..+..+..+++..|.++-.-+.               
T Consensus       165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~l---------------  226 (414)
T KOG0531|consen  165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEGL---------------  226 (414)
T ss_pred             hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccCc---------------
Confidence            777777776664333 2 4556677777777777652  22333444455556666666511000               


Q ss_pred             cccccccccccccccCCCCCCCcceeEeeecccccccCCCCcC--ccceeeccCccccccCCccccccCCCCEEEccCcc
Q 044158          656 LIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLE--SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNN  733 (892)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  733 (892)
                                                             ..+.  +|+.+++++|.+. .++..+..+..+..|+++.|+
T Consensus       227 ---------------------------------------~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~  266 (414)
T KOG0531|consen  227 ---------------------------------------NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNR  266 (414)
T ss_pred             ---------------------------------------ccchhHHHHHHhcccCccc-cccccccccccccccchhhcc
Confidence                                                   0001  2667777777776 344556667777778888777


Q ss_pred             CCccccccccCCCCCCEEECCCCcCccc---CCcc-ccCCCCCCEEEccCCcccccCC
Q 044158          734 LTGTIPVTFSNLRQVESLDLSYNNLTGK---IPPR-LVELNALAVFTVAHNNLSGKIP  787 (892)
Q Consensus       734 l~~~~p~~~~~l~~L~~LdLs~N~l~g~---ip~~-l~~l~~L~~l~ls~N~l~g~ip  787 (892)
                      +...-  .+.....+..+.++.|.+...   .... ....+.+....+.+|+.....+
T Consensus       267 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  267 ISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            76332  234556666677777766521   1111 4556677778888887766554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.77  E-value=7.7e-10  Score=122.81  Aligned_cols=219  Identities=28%  Similarity=0.322  Sum_probs=153.7

Q ss_pred             ccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCcc
Q 044158          498 SNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLL  577 (892)
Q Consensus       498 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~  577 (892)
                      ..+..++.+.+..|.+.. +-..+..+.+|+.+++.+|++.+.. ..+..+++|++|++++|.|+.+.   .+..++.|+
T Consensus        69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~---~l~~l~~L~  143 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE---GLSTLTLLK  143 (414)
T ss_pred             HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheecccccccccc---chhhccchh
Confidence            345566666677777763 3345677888999999999987543 22677888999999999988744   566777799


Q ss_pred             EEEccCCccCccCChhhhcCCCCCEEecccccccccCC-ccccCCCCCCEEEcCCCcCCCCCCccccCCccccccccccc
Q 044158          578 TLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVP-LRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDL  656 (892)
Q Consensus       578 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~  656 (892)
                      .|++++|.+...  ..+..++.|+.+++++|++...-+ . ...+.+++.+++++|.+.-.-.  +.             
T Consensus       144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~-------------  205 (414)
T KOG0531|consen  144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LD-------------  205 (414)
T ss_pred             hheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hH-------------
Confidence            999999988732  345558889999999998885433 2 4677888888888888751100  00             


Q ss_pred             ccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCC--CCEEEccCccC
Q 044158          657 IPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIR--IHTLNLSRNNL  734 (892)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l  734 (892)
                                                             .+..+..+++..|.++-.-+  +..+..  |+.+++++|.+
T Consensus       206 ---------------------------------------~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i  244 (414)
T KOG0531|consen  206 ---------------------------------------LLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRI  244 (414)
T ss_pred             ---------------------------------------HHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcc
Confidence                                                   01134445778888763322  223333  88999999999


Q ss_pred             CccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCccc
Q 044158          735 TGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS  783 (892)
Q Consensus       735 ~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~  783 (892)
                      . .++..+..+..+..||+++|++...  ..+.....+..+....|.+.
T Consensus       245 ~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  245 S-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             c-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence            8 4446777889999999999998854  23455667777788888765

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.77  E-value=6.5e-09  Score=122.97  Aligned_cols=87  Identities=28%  Similarity=0.290  Sum_probs=48.8

Q ss_pred             cCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCC
Q 044158           73 LSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRK  152 (892)
Q Consensus        73 ~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~  152 (892)
                      |..++.|++||||+|.--+.+|.+++.+-+||+|+++++.+. .+|. .++++.+|.+|++..+.-.... +.....+++
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~  643 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVTGRLESI-PGILLELQS  643 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHHHhhheeccccccccccc-cchhhhccc
Confidence            555666666666665544456666666666666666666655 4555 5666666666666655433222 333444556


Q ss_pred             CcEEeCCCCc
Q 044158          153 LRFLDLSGLR  162 (892)
Q Consensus       153 L~~L~L~~n~  162 (892)
                      ||+|.+....
T Consensus       644 Lr~L~l~~s~  653 (889)
T KOG4658|consen  644 LRVLRLPRSA  653 (889)
T ss_pred             ccEEEeeccc
Confidence            6666555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.76  E-value=5.1e-09  Score=80.93  Aligned_cols=59  Identities=42%  Similarity=0.594  Sum_probs=28.5

Q ss_pred             CCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCc
Q 044158          723 RIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNN  781 (892)
Q Consensus       723 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~  781 (892)
                      +|++|++++|+++...+..|.++++|++||+++|+++...|..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444444444443333444445555555555555544444444555555555555544

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.73  E-value=8.9e-09  Score=79.56  Aligned_cols=60  Identities=48%  Similarity=0.617  Sum_probs=56.1

Q ss_pred             ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcC
Q 044158          699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNL  758 (892)
Q Consensus       699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l  758 (892)
                      +|+.|++++|+++...+..|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            588999999999977667899999999999999999988889999999999999999986

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.64  E-value=6.9e-08  Score=114.40  Aligned_cols=273  Identities=22%  Similarity=0.237  Sum_probs=165.9

Q ss_pred             CCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCc--CCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCc
Q 044158          354 NTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNK--LQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLI  431 (892)
Q Consensus       354 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~--l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~  431 (892)
                      ....+.+.+-+|.+....  .-..+++|++|-+..|.  +. .++..+|..+|.|+.|||++|.-.+..|..++.+-+|+
T Consensus       522 ~~~~rr~s~~~~~~~~~~--~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEHIA--GSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             hhheeEEEEeccchhhcc--CCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            355667777666654321  12234478888888886  44 77777777789999999998887778899999999999


Q ss_pred             EEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCc--CCCCcccccCCCCcEEEcc
Q 044158          432 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFI--GGIPESLSNCSSLQGLYIS  509 (892)
Q Consensus       432 ~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~L~  509 (892)
                      +|++++..+. .+|..+ .++..|.+|++..+.-...++.....+.+|++|.+..-...  ...-..+.++.+|+.+...
T Consensus       599 yL~L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  599 YLDLSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             cccccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            9999999988 888887 47888999999888766666667777889999988765422  1112334555666666554


Q ss_pred             CCcCCCCccccccCCCCCc----EEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCccccccc-----C-CCCccEE
Q 044158          510 DNDISGSIPTWMGNISFLD----AIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFS-----K-CSYLLTL  579 (892)
Q Consensus       510 ~n~l~~~~~~~~~~~~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----~-~~~L~~L  579 (892)
                      ....  .+-..+..++.|.    .+.+..+... ..+..+..+.+|+.|.+.++.+..... ....     . ++++..+
T Consensus       677 ~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~-~~~~~~~~~~~f~~l~~~  752 (889)
T KOG4658|consen  677 ISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVI-EWEESLIVLLCFPNLSKV  752 (889)
T ss_pred             cchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhc-ccccccchhhhHHHHHHH
Confidence            3332  1111122222222    2333232222 334456677788888888877754211 0100     0 1223333


Q ss_pred             EccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCC
Q 044158          580 DLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSG  636 (892)
Q Consensus       580 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g  636 (892)
                      ...++..- ..+.|..-.++|+.|.+..+.....+......+..+..+-+..+.+.+
T Consensus       753 ~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~  808 (889)
T KOG4658|consen  753 SILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG  808 (889)
T ss_pred             Hhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence            33333222 234444556778888887777665555555555555555555555554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=2.5e-09  Score=104.33  Aligned_cols=16  Identities=25%  Similarity=0.146  Sum_probs=6.8

Q ss_pred             cCCCCCCEEECCCCCC
Q 044158          174 GSFPSLKTLYLKSNNF  189 (892)
Q Consensus       174 ~~l~~L~~L~L~~n~l  189 (892)
                      .+|+.|..|++++|.+
T Consensus       257 ~scs~L~~LNlsWc~l  272 (419)
T KOG2120|consen  257 SSCSRLDELNLSWCFL  272 (419)
T ss_pred             HhhhhHhhcCchHhhc
Confidence            3344444444444433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.44  E-value=2.8e-08  Score=97.14  Aligned_cols=109  Identities=27%  Similarity=0.291  Sum_probs=68.3

Q ss_pred             CCcEEeCCCCccCCcccccccccc-CCCCCCCEEeCCCCCCCCc--ccccccCCCCCCEEecCCcccccCCChhhh-cCC
Q 044158           50 QLESLDLSGNNIAGCVENEGLEKL-SGLSNLKFLDLSHNSFNNS--VLSSLAGLSSLKNLSLAYNRLEGSINIEEL-DSL  125 (892)
Q Consensus        50 ~L~~L~Ls~n~i~~~~~~~~~~~~-~~l~~L~~L~Ls~n~i~~~--~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l-~~l  125 (892)
                      .++.|-+.++.|......   ..| +..++++.|||.+|.|++-  +..-+.++|+|++|+|+.|.+...|.  .+ ..+
T Consensus        46 a~ellvln~~~id~~gd~---~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~p~  120 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDV---MLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPLPL  120 (418)
T ss_pred             chhhheecCCCCCcchhH---HHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc--cCcccc
Confidence            444555556665433221   223 3567788888888888752  34445688888888888888774443  23 355


Q ss_pred             CCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcC
Q 044158          126 SNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRI  163 (892)
Q Consensus       126 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i  163 (892)
                      .+|++|-|.+..+.-......+..+|++++|.++.|.+
T Consensus       121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            67788877777665443344466777777777777644

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.41  E-value=1e-08  Score=105.05  Aligned_cols=237  Identities=21%  Similarity=0.147  Sum_probs=130.5

Q ss_pred             CCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCC-CCCccccccc-CCCCCCEEecCCcc-cccCCChhhhcCC
Q 044158           49 QQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNS-FNNSVLSSLA-GLSSLKNLSLAYNR-LEGSINIEELDSL  125 (892)
Q Consensus        49 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~l~-~l~~L~~L~Ls~n~-l~~~i~~~~l~~l  125 (892)
                      ..|+.|.+.++.-.+.....  ..-..++++++|++.++. +++....+++ .+++|++|++..|. ++...-......+
T Consensus       138 g~lk~LSlrG~r~v~~sslr--t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC  215 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLR--TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC  215 (483)
T ss_pred             cccccccccccccCCcchhh--HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence            35777777776543322110  123478888888888884 4544444443 67888888888743 3321111133567


Q ss_pred             CCCCEEeCCCCC-CCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCC
Q 044158          126 SNLEGLDMSDNE-IDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAH  204 (892)
Q Consensus       126 ~~L~~L~L~~n~-i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~  204 (892)
                      ++|++|+++.|. |++-.....+.+++.++.+.+.++.-...+.+...-+.+..+.++++..|...........-..+..
T Consensus       216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~  295 (483)
T KOG4341|consen  216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA  295 (483)
T ss_pred             hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence            888888888774 5543333446777777777777654433322222334455667777666643332222222345677


Q ss_pred             CcEEEccCCcCccC-ccccc-cCCCCCcEEeCCCCCcccccCCCcc-cccccCcEEeccCccccCCCCc-hhhcCCCCcc
Q 044158          205 LQELYIDHNDFIGS-LPWCL-ANLTSLRVLHVPDNQLTENLSSSPL-MHLTSIELLILSNNHFQIPMSL-EPFFNYSKLK  280 (892)
Q Consensus       205 L~~L~L~~n~l~~~-~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~  280 (892)
                      |+.|+.+++...+. .-..+ .+..+|+.+.++.++--+......+ .+++.|+.+++..+........ ..-.+++.|+
T Consensus       296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr  375 (483)
T KOG4341|consen  296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR  375 (483)
T ss_pred             hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence            88888877643222 22233 3467888888887763222222222 2566777777776643322111 1223455555


Q ss_pred             EEEccCc
Q 044158          281 IFHGREN  287 (892)
Q Consensus       281 ~l~l~~~  287 (892)
                      .+.++.+
T Consensus       376 ~lslshc  382 (483)
T KOG4341|consen  376 VLSLSHC  382 (483)
T ss_pred             cCChhhh
Confidence            5555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.36  E-value=1.9e-08  Score=86.74  Aligned_cols=85  Identities=21%  Similarity=0.317  Sum_probs=46.6

Q ss_pred             cceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccC
Q 044158          700 IHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAH  779 (892)
Q Consensus       700 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~  779 (892)
                      ++.+++++|+++ .+|.++..++.|+.||++.|.+. ..|..+..+.++..||..+|.+. +||..+---+.....++.+
T Consensus        79 ~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgn  155 (177)
T KOG4579|consen   79 ATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGN  155 (177)
T ss_pred             hhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcC
Confidence            555666666665 45666666666666666666665 44555555666666666666655 4544433323333334444


Q ss_pred             CcccccCC
Q 044158          780 NNLSGKIP  787 (892)
Q Consensus       780 N~l~g~ip  787 (892)
                      +++.+..|
T Consensus       156 epl~~~~~  163 (177)
T KOG4579|consen  156 EPLGDETK  163 (177)
T ss_pred             CcccccCc
Confidence            44444444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=2.9e-08  Score=96.99  Aligned_cols=159  Identities=18%  Similarity=0.189  Sum_probs=90.2

Q ss_pred             CCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCC-cCCCCCchhhhhcCCCCcE
Q 044158          330 HHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYN-KLQGHIPVEIGKVLPNLGF  408 (892)
Q Consensus       330 ~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~i~~~~~~~l~~L~~  408 (892)
                      +.++.+|++...++..--..++..|.+|+.|.+.++++.+.+...+....+|+.|+++.+ .++..--..++..++.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            357777887777766555566778888888888888887766666777777888888765 3442223344555777777


Q ss_pred             EECcCCcCCccCchh-ccC-CCCCcEEECcCCcC--ccccchhHhhcCccCcEEEccCC-cccccccccccccCCCcEEe
Q 044158          409 LTISFNAFNGSIPSS-FGD-MNSLIYLDLSNNQL--TGEIPEHLAMGCFNLEYLLLSNN-SLQGQLFSKKINLTKLKRLN  483 (892)
Q Consensus       409 L~L~~n~~~~~~p~~-~~~-l~~L~~L~L~~n~l--~~~i~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  483 (892)
                      |+++.|.+....... +.. -++|+.|+|+++.-  ...--+.+...+++|..|||+.| .++......|..++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            777777654322111 111 13566666666521  11111122234555666665544 23332333344445555555


Q ss_pred             ecCcc
Q 044158          484 LDGNH  488 (892)
Q Consensus       484 L~~n~  488 (892)
                      ++.|-
T Consensus       345 lsRCY  349 (419)
T KOG2120|consen  345 LSRCY  349 (419)
T ss_pred             hhhhc
Confidence            55543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.34  E-value=1.5e-08  Score=110.46  Aligned_cols=198  Identities=22%  Similarity=0.174  Sum_probs=125.6

Q ss_pred             CCCccEEEccCCcCCCCC-chhhhhcCCCCcEEECcCCcCCccCchhccCC-CCCcEEECcCCcCc----------cccc
Q 044158          378 RKNIIALDISYNKLQGHI-PVEIGKVLPNLGFLTISFNAFNGSIPSSFGDM-NSLIYLDLSNNQLT----------GEIP  445 (892)
Q Consensus       378 ~~~L~~L~l~~n~l~~~i-~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l-~~L~~L~L~~n~l~----------~~i~  445 (892)
                      +++++.|.+-.-.-.+.. |..++. +.+|+.|.+.+|.+...  ..+..+ ..|++|. .+|.+.          |.+.
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifp-F~sLr~LElrg~~L~~~--~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~  158 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFP-FRSLRVLELRGCDLSTA--KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDIS  158 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceecc-ccceeeEEecCcchhhh--hhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccc
Confidence            344455554433222222 556665 78999999999887631  111111 1233332 122221          1111


Q ss_pred             hhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCC
Q 044158          446 EHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNIS  525 (892)
Q Consensus       446 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  525 (892)
                      ....  .-.|...+.++|.+. .....+.-++.|+.|+|++|+++..  +.+..|++|++|||+.|.+....--....+.
T Consensus       159 ns~~--Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~  233 (1096)
T KOG1859|consen  159 NSPV--WNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK  233 (1096)
T ss_pred             cchh--hhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh
Confidence            1110  125777788888877 3445666788899999999998754  3788889999999999988743332334444


Q ss_pred             CCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccC
Q 044158          526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLN  587 (892)
Q Consensus       526 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~  587 (892)
                       |..|.+++|.++..  ..+.++.+|+.||+++|-+.+..--..+..+..|+.|+|.+|.+-
T Consensus       234 -L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  234 -LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             -heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence             88899999988743  357788888999999998876544445666778888888888764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=8.1e-08  Score=93.93  Aligned_cols=65  Identities=17%  Similarity=0.219  Sum_probs=37.7

Q ss_pred             CCCCCEEEccCCcCcCCC-CCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCc
Q 044158          354 NTNLRSIILANNSLSGPF-RLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNG  418 (892)
Q Consensus       354 ~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~  418 (892)
                      ++++..+.+..|.+.... ...+..++.+..|+|+.++|...-..+..+.++.|+.|.++++.+.+
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            456666677777654322 22334455566677777776644444444456777777777776553

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.29  E-value=2e-08  Score=109.42  Aligned_cols=128  Identities=26%  Similarity=0.275  Sum_probs=84.2

Q ss_pred             CCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCc
Q 044158          127 NLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQ  206 (892)
Q Consensus       127 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~  206 (892)
                      .|.+.+.++|.+..+  ...+.-++.|+.|+|++|+++..    +.+..+++|++|||++|.+......  ....+. |+
T Consensus       165 ~L~~a~fsyN~L~~m--D~SLqll~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsyN~L~~vp~l--~~~gc~-L~  235 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLM--DESLQLLPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSYNCLRHVPQL--SMVGCK-LQ  235 (1096)
T ss_pred             hHhhhhcchhhHHhH--HHHHHHHHHhhhhccchhhhhhh----HHHHhcccccccccccchhcccccc--chhhhh-he
Confidence            456666677776654  44566677777778887777754    4667777777777777777654333  223333 77


Q ss_pred             EEEccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCcccc
Q 044158          207 ELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQ  265 (892)
Q Consensus       207 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~  265 (892)
                      .|.+++|.++..  ..+.++++|+.||++.|-+.+.-....+..+..|+.|.|.+|.+-
T Consensus       236 ~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  236 LLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            777777766533  235677777777777777766444455666677777777777654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.11  E-value=6.1e-07  Score=86.79  Aligned_cols=218  Identities=22%  Similarity=0.233  Sum_probs=103.5

Q ss_pred             CCCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCC---CCc-------ccccccCCCCCCEEecCCcccccCC
Q 044158           48 FQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSF---NNS-------VLSSLAGLSSLKNLSLAYNRLEGSI  117 (892)
Q Consensus        48 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i---~~~-------~~~~l~~l~~L~~L~Ls~n~l~~~i  117 (892)
                      +..+..+|||+|.|..-.....-..+.+-++|+..++|.--.   .+.       +..++.+|++|+..+||.|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            445555666666554322211122344455555555554311   111       1233445666666666666554333


Q ss_pred             Ch---hhhcCCCCCCEEeCCCCCCCCcccc------------ccccCCCCCcEEeCCCCcCCCCccc--cccccCCCCCC
Q 044158          118 NI---EELDSLSNLEGLDMSDNEIDNLVVP------------KDYRGLRKLRFLDLSGLRIRDGSKV--LHSIGSFPSLK  180 (892)
Q Consensus       118 ~~---~~l~~l~~L~~L~L~~n~i~~~~~~------------~~~~~l~~L~~L~L~~n~i~~~~~~--~~~l~~l~~L~  180 (892)
                      |.   ..+++-+.|++|.+++|.+-.+...            .....-|.|+......|++......  ...+.....|+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            32   2344556666666666654322110            1123446677777777776654221  12233345677


Q ss_pred             EEECCCCCCCCccC---CcccccCCCCCcEEEccCCcCccCcc----ccccCCCCCcEEeCCCCCcccccCCCcc-----
Q 044158          181 TLYLKSNNFAKTVT---TTQGLCELAHLQELYIDHNDFIGSLP----WCLANLTSLRVLHVPDNQLTENLSSSPL-----  248 (892)
Q Consensus       181 ~L~L~~n~l~~~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~l-----  248 (892)
                      ++.+..|.+...-.   ....+..+.+|+.||+.+|.++-...    ..+..-+.|+.|.+.+|-++..-....+     
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e  268 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE  268 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence            77777765532200   01133455667777777776653322    2233334566666666655432111111     


Q ss_pred             cccccCcEEeccCcccc
Q 044158          249 MHLTSIELLILSNNHFQ  265 (892)
Q Consensus       249 ~~l~~L~~L~L~~n~l~  265 (892)
                      ...++|..|...+|...
T Consensus       269 ~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         269 KFVPNLMPLPGDYNERR  285 (388)
T ss_pred             hcCCCccccccchhhhc
Confidence            12345555555555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.08  E-value=3.7e-07  Score=88.29  Aligned_cols=243  Identities=18%  Similarity=0.152  Sum_probs=164.8

Q ss_pred             CcEEEEEcCCCccccc-cccCcccCCCCCCCcEEeCCCCccCCcccc------ccccccCCCCCCCEEeCCCCCCCCccc
Q 044158           22 SRVIAIDLLSLNIASA-LYLNFSLFTPFQQLESLDLSGNNIAGCVEN------EGLEKLSGLSNLKFLDLSHNSFNNSVL   94 (892)
Q Consensus        22 ~~v~~l~L~~~~~~~~-~~~~~s~f~~~~~L~~L~Ls~n~i~~~~~~------~~~~~~~~l~~L~~L~Ls~n~i~~~~~   94 (892)
                      ..++.+||+|+.+.-. ...-...+++-++|+..++|.-........      -.+.++.+|++|+..+||+|.|....|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            4689999999965321 222234567788999999987543221110      122456899999999999999876655


Q ss_pred             c----cccCCCCCCEEecCCcccccCCChhh-------------hcCCCCCCEEeCCCCCCCCccc---cccccCCCCCc
Q 044158           95 S----SLAGLSSLKNLSLAYNRLEGSINIEE-------------LDSLSNLEGLDMSDNEIDNLVV---PKDYRGLRKLR  154 (892)
Q Consensus        95 ~----~l~~l~~L~~L~Ls~n~l~~~i~~~~-------------l~~l~~L~~L~L~~n~i~~~~~---~~~~~~l~~L~  154 (892)
                      +    .+++-+.|++|.+++|.+. .+....             ..+-+.|++.....|++.....   ...+..-.+|+
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            4    4567899999999999875 333222             2355899999999999875421   12244447999


Q ss_pred             EEeCCCCcCCCCcc---ccccccCCCCCCEEECCCCCCCCccC--CcccccCCCCCcEEEccCCcCccCccccc------
Q 044158          155 FLDLSGLRIRDGSK---VLHSIGSFPSLKTLYLKSNNFAKTVT--TTQGLCELAHLQELYIDHNDFIGSLPWCL------  223 (892)
Q Consensus       155 ~L~L~~n~i~~~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~l------  223 (892)
                      ++.+..|.|.....   ....+..+.+|+.|++..|.++..-.  ...+++..+.|++|.+.+|-++.....++      
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e  268 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE  268 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence            99999999875311   12334568999999999998764321  22356667789999999998775544332      


Q ss_pred             cCCCCCcEEeCCCCCcccccCCC------cccccccCcEEeccCcccc
Q 044158          224 ANLTSLRVLHVPDNQLTENLSSS------PLMHLTSIELLILSNNHFQ  265 (892)
Q Consensus       224 ~~l~~L~~L~L~~n~l~~~~~~~------~l~~l~~L~~L~L~~n~l~  265 (892)
                      ...|+|+.|....|...+.+...      .-..+|-|..|.+.+|++.
T Consensus       269 ~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         269 KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            23588999999998876543221      1134666777777777665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.94  E-value=1.7e-05  Score=73.85  Aligned_cols=84  Identities=29%  Similarity=0.388  Sum_probs=39.5

Q ss_pred             CCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEe
Q 044158           78 NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLD  157 (892)
Q Consensus        78 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~  157 (892)
                      ....+||++|.+..  ...|.+++.|.+|.|++|+|+ .|...--.-+++|+.|.|.+|.|..+..-.-+..+++|++|.
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            34455555555532  234455555555555555555 344322233344555555555544433222244444555555


Q ss_pred             CCCCcCC
Q 044158          158 LSGLRIR  164 (892)
Q Consensus       158 L~~n~i~  164 (892)
                      +-+|.++
T Consensus       120 ll~Npv~  126 (233)
T KOG1644|consen  120 LLGNPVE  126 (233)
T ss_pred             ecCCchh
Confidence            5444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.91  E-value=7.2e-07  Score=77.24  Aligned_cols=113  Identities=23%  Similarity=0.299  Sum_probs=65.8

Q ss_pred             CCcEEECCCCcccCCCcccc-cCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEe
Q 044158          526 FLDAIIMPDNHLEGPIPSEF-CQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLI  604 (892)
Q Consensus       526 ~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  604 (892)
                      .|+..+|++|.+.. .|..| ..++.++.|++++|.++.  +|..+..++.|+.|+++.|.+. ..|..+..+.+|-.|+
T Consensus        54 el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   54 ELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             eEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            34444555555543 23333 334566677777777763  4556777777777777777776 4566666677777777


Q ss_pred             cccccccccCCccccCCCCCCEEEcCCCcCCCCCCcccc
Q 044158          605 LANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLD  643 (892)
Q Consensus       605 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~  643 (892)
                      ..+|.+. .+|..+..-......++.++++.+.-|..+.
T Consensus       130 s~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq  167 (177)
T KOG4579|consen  130 SPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ  167 (177)
T ss_pred             CCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence            7777766 3444333323333445566777665554433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.91  E-value=4.5e-07  Score=93.24  Aligned_cols=110  Identities=18%  Similarity=0.134  Sum_probs=58.3

Q ss_pred             hhhcCCCCcEEECcCCcCCcc--CchhccCCCCCcEEECcCCcCccccc----hhHhhcCccCcEEEccCCccc-ccccc
Q 044158          399 IGKVLPNLGFLTISFNAFNGS--IPSSFGDMNSLIYLDLSNNQLTGEIP----EHLAMGCFNLEYLLLSNNSLQ-GQLFS  471 (892)
Q Consensus       399 ~~~~l~~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~L~~n~l~~~i~----~~~~~~~~~L~~L~L~~n~l~-~~~~~  471 (892)
                      ++.+.+.|+.+++..+.....  +...-.+++.|+.+.++++.....-.    .....+...|+.+.|+++... ....+
T Consensus       341 l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le  420 (483)
T KOG4341|consen  341 LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE  420 (483)
T ss_pred             hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence            444456666666666643211  11112356667777777664321110    011123456777888877543 33445


Q ss_pred             cccccCCCcEEeecCccCcCC--CCcccccCCCCcEEEc
Q 044158          472 KKINLTKLKRLNLDGNHFIGG--IPESLSNCSSLQGLYI  508 (892)
Q Consensus       472 ~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~L  508 (892)
                      .+..+++|+.+++.+++-...  +...-.+++++++.-+
T Consensus       421 ~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  421 HLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             HHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence            566788899888888864322  1122345666665443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.78  E-value=2.1e-05  Score=55.34  Aligned_cols=36  Identities=39%  Similarity=0.660  Sum_probs=16.5

Q ss_pred             CCCEEEccCccCCccccccccCCCCCCEEECCCCcCc
Q 044158          723 RIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLT  759 (892)
Q Consensus       723 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  759 (892)
                      +|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3445555555554 33334455555555555555444

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.77  E-value=5.6e-06  Score=95.83  Aligned_cols=16  Identities=31%  Similarity=0.549  Sum_probs=8.9

Q ss_pred             CCCCcEEeCCCCCccc
Q 044158          226 LTSLRVLHVPDNQLTE  241 (892)
Q Consensus       226 l~~L~~L~L~~n~l~~  241 (892)
                      +|+|+.||.+++.+.+
T Consensus       249 LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  249 LPELRFLDCSGTDINE  264 (699)
T ss_pred             CccccEEecCCcchhH
Confidence            4555555555555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.76  E-value=8.1e-05  Score=79.23  Aligned_cols=76  Identities=13%  Similarity=0.107  Sum_probs=54.4

Q ss_pred             ccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccc-cccccCCccccCCCC
Q 044158          545 FCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANN-NFEGEVPLRLCQLQK  623 (892)
Q Consensus       545 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~  623 (892)
                      +..+.+++.|++++|.++.+  |   .-..+|++|.+++|.-...+|+.+.  ++|+.|++++| .+. .+|.      +
T Consensus        48 ~~~~~~l~~L~Is~c~L~sL--P---~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESL--P---VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------S  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCccc--C---CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------c
Confidence            44568899999999988864  3   1235799999998654456776553  58999999998 444 4553      5


Q ss_pred             CCEEEcCCCcC
Q 044158          624 LRLLDLSHNNF  634 (892)
Q Consensus       624 L~~L~Ls~N~l  634 (892)
                      |+.|+++++..
T Consensus       114 Le~L~L~~n~~  124 (426)
T PRK15386        114 VRSLEIKGSAT  124 (426)
T ss_pred             cceEEeCCCCC
Confidence            77777776654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.75  E-value=5e-05  Score=70.87  Aligned_cols=130  Identities=25%  Similarity=0.270  Sum_probs=92.4

Q ss_pred             EEEEEcCCCccccccccCcccCCCCCCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCC
Q 044158           24 VIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSL  103 (892)
Q Consensus        24 v~~l~L~~~~~~~~~~~~~s~f~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L  103 (892)
                      =++++|.+.++.....+-    .-..+...+||+.|++...      ..|..++.|..|.|++|.|+.+.|.--..+++|
T Consensus        21 e~e~~LR~lkip~ienlg----~~~d~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l   90 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLG----ATLDQFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNL   90 (233)
T ss_pred             ccccccccccccchhhcc----ccccccceecccccchhhc------ccCCCccccceEEecCCcceeeccchhhhcccc
Confidence            345666665443222110    1244667899999998654      348899999999999999998777666678899


Q ss_pred             CEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccc--cccccCCCCCcEEeCCCCcC
Q 044158          104 KNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVV--PKDYRGLRKLRFLDLSGLRI  163 (892)
Q Consensus       104 ~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~--~~~~~~l~~L~~L~L~~n~i  163 (892)
                      ..|.|.+|.+..--....+..+++|++|.+-+|.++...-  ...+..+++|+.||+.....
T Consensus        91 ~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen   91 KTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             ceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            9999999987632233468889999999999998876421  12356677777777766544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.73  E-value=2.6e-05  Score=54.87  Aligned_cols=37  Identities=38%  Similarity=0.688  Sum_probs=32.4

Q ss_pred             CCCCEEECCCCcCcccCCccccCCCCCCEEEccCCccc
Q 044158          746 RQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS  783 (892)
Q Consensus       746 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~  783 (892)
                      ++|++|++++|+|+ .+|..+.++++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            47999999999999 67878999999999999999987

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.62  E-value=0.00022  Score=76.02  Aligned_cols=54  Identities=22%  Similarity=0.177  Sum_probs=25.6

Q ss_pred             CCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCC
Q 044158          403 LPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN  463 (892)
Q Consensus       403 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n  463 (892)
                      +.+++.|++++|.++ .+|.   -.++|++|.++++.-...+|..+   ..+|+.|++++|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence            456666666666555 2331   12246666665542222444322   234444554444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.58  E-value=3.7e-05  Score=89.14  Aligned_cols=155  Identities=21%  Similarity=0.237  Sum_probs=104.9

Q ss_pred             CCCCCEEeCCCCCC-CCccccccc-CCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCC
Q 044158           76 LSNLKFLDLSHNSF-NNSVLSSLA-GLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKL  153 (892)
Q Consensus        76 l~~L~~L~Ls~n~i-~~~~~~~l~-~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L  153 (892)
                      -.+|++||+++... ...-+..++ .+|+|++|.+++-.+...=-.....++++|..||+|+.+++.+   ..++++++|
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknL  197 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNL  197 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccH
Confidence            36899999988753 323344444 6899999999886654210012567889999999999998876   348899999


Q ss_pred             cEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCC----cccccCCCCCcEEEccCCcCccCcccc-ccCCCC
Q 044158          154 RFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTT----TQGLCELAHLQELYIDHNDFIGSLPWC-LANLTS  228 (892)
Q Consensus       154 ~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~  228 (892)
                      +.|.+.+-.+.... ....+..+++|++||+|..........    .+.-..+|+|+.||.+++.+...+-+. +...++
T Consensus       198 q~L~mrnLe~e~~~-~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~  276 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQ-DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN  276 (699)
T ss_pred             HHHhccCCCCCchh-hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence            99999988887632 234567799999999988765433210    112234889999999998876554333 233455


Q ss_pred             CcEEeC
Q 044158          229 LRVLHV  234 (892)
Q Consensus       229 L~~L~L  234 (892)
                      |+.+..
T Consensus       277 L~~i~~  282 (699)
T KOG3665|consen  277 LQQIAA  282 (699)
T ss_pred             Hhhhhh
Confidence            555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.49  E-value=0.00019  Score=65.34  Aligned_cols=87  Identities=16%  Similarity=0.145  Sum_probs=31.8

Q ss_pred             chhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccC
Q 044158          347 PSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGD  426 (892)
Q Consensus       347 p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~  426 (892)
                      +...|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +. .++...+..+++++.+.+.. .+.......|..
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccc
Confidence            334455566666666553 343333444444444555555443 32 34444444344445444433 222222333444


Q ss_pred             CCCCcEEECcC
Q 044158          427 MNSLIYLDLSN  437 (892)
Q Consensus       427 l~~L~~L~L~~  437 (892)
                      +++|+.+++..
T Consensus        80 ~~~l~~i~~~~   90 (129)
T PF13306_consen   80 CTNLKNIDIPS   90 (129)
T ss_dssp             -TTECEEEETT
T ss_pred             cccccccccCc
Confidence            44444444433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.44  E-value=5.6e-05  Score=73.89  Aligned_cols=89  Identities=28%  Similarity=0.367  Sum_probs=36.6

Q ss_pred             ccCCCCCCEEecCCc--ccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCcccc-ccc
Q 044158           97 LAGLSSLKNLSLAYN--RLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVL-HSI  173 (892)
Q Consensus        97 l~~l~~L~~L~Ls~n--~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~l  173 (892)
                      |..+++|++|.++.|  ++.+.++. ....+++|++|++++|+|..+.-...+..+.+|..|++.+|..+.....- ..+
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf  139 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF  139 (260)
T ss_pred             CCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence            334444444444444  22222222 22333444444444444443221122344445555555555444321111 223


Q ss_pred             cCCCCCCEEECCC
Q 044158          174 GSFPSLKTLYLKS  186 (892)
Q Consensus       174 ~~l~~L~~L~L~~  186 (892)
                      .-+++|++|+-..
T Consensus       140 ~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  140 LLLPSLKYLDGCD  152 (260)
T ss_pred             HHhhhhccccccc
Confidence            4456666665443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.43  E-value=0.00024  Score=64.74  Aligned_cols=79  Identities=25%  Similarity=0.306  Sum_probs=26.6

Q ss_pred             CCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEE
Q 044158          403 LPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRL  482 (892)
Q Consensus       403 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  482 (892)
                      +++|+.+.+.. .+.......|.++++|+.+++.++ +. .++...|.++.+++.+.+.+ .+.......|..+++|+.+
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            34444444432 233333334444444444444442 33 44444444444444444433 2222222333344444444


Q ss_pred             eec
Q 044158          483 NLD  485 (892)
Q Consensus       483 ~L~  485 (892)
                      ++.
T Consensus        87 ~~~   89 (129)
T PF13306_consen   87 DIP   89 (129)
T ss_dssp             EET
T ss_pred             ccC
Confidence            443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.23  E-value=0.00013  Score=71.47  Aligned_cols=106  Identities=27%  Similarity=0.350  Sum_probs=48.0

Q ss_pred             CCCCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCC--CCCCcccccccCCCCCCEEecCCcccccCCChhhhcC
Q 044158           47 PFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHN--SFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDS  124 (892)
Q Consensus        47 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~  124 (892)
                      .+..|+.|++.+..++..      ..|..+++|++|.+|.|  .+.+.++.....+++|++|++++|++.-.-....+..
T Consensus        41 ~~~~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~  114 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE  114 (260)
T ss_pred             cccchhhhhhhccceeec------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence            344444444444444322      12445555555555555  3443333333444555555555555541101123444


Q ss_pred             CCCCCEEeCCCCCCCCccc--cccccCCCCCcEEeC
Q 044158          125 LSNLEGLDMSDNEIDNLVV--PKDYRGLRKLRFLDL  158 (892)
Q Consensus       125 l~~L~~L~L~~n~i~~~~~--~~~~~~l~~L~~L~L  158 (892)
                      +.+|..|++.+|..+...-  ...|.-+++|++|+=
T Consensus       115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            5555555555555443211  112444455555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.76  E-value=5.2e-05  Score=74.07  Aligned_cols=82  Identities=27%  Similarity=0.374  Sum_probs=36.0

Q ss_pred             CCCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCC-hhhhcCCC
Q 044158           48 FQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN-IEELDSLS  126 (892)
Q Consensus        48 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~-~~~l~~l~  126 (892)
                      +.+.+.|+.-++.++.+      ..+.+++.|++|.||-|+|+.  .+.+.+|++|+.|+|..|.|. ++. ..-+.+++
T Consensus        18 l~~vkKLNcwg~~L~DI------sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~-sldEL~YLknlp   88 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI------SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLP   88 (388)
T ss_pred             HHHhhhhcccCCCccHH------HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCc
Confidence            33444455555544322      123445555555555555543  233445555555555555443 221 11234444


Q ss_pred             CCCEEeCCCCCC
Q 044158          127 NLEGLDMSDNEI  138 (892)
Q Consensus       127 ~L~~L~L~~n~i  138 (892)
                      +|+.|-|..|..
T Consensus        89 sLr~LWL~ENPC  100 (388)
T KOG2123|consen   89 SLRTLWLDENPC  100 (388)
T ss_pred             hhhhHhhccCCc
Confidence            444444444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.60  E-value=7.9e-05  Score=72.81  Aligned_cols=84  Identities=27%  Similarity=0.279  Sum_probs=51.5

Q ss_pred             CCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCC
Q 044158           74 SGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKL  153 (892)
Q Consensus        74 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L  153 (892)
                      +.+.+.+.|++-+|.++++  .-..+++.|+.|.||-|.|+ ++.  .+..|++|++|+|..|.|.++.-...+.++++|
T Consensus        16 sdl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL   90 (388)
T KOG2123|consen   16 SDLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSL   90 (388)
T ss_pred             hHHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence            3455667777777777652  33456777777777777766 333  466677777777777776665333334555555


Q ss_pred             cEEeCCCCc
Q 044158          154 RFLDLSGLR  162 (892)
Q Consensus       154 ~~L~L~~n~  162 (892)
                      +.|.|..|.
T Consensus        91 r~LWL~ENP   99 (388)
T KOG2123|consen   91 RTLWLDENP   99 (388)
T ss_pred             hhHhhccCC
Confidence            555555543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.58  E-value=0.00039  Score=79.76  Aligned_cols=65  Identities=31%  Similarity=0.258  Sum_probs=30.5

Q ss_pred             CCCCCCEEecCCcccccCCChhhhcC-CCCCCEEeCCCCC-CCCccccccccCCCCCcEEeCCCCcC
Q 044158           99 GLSSLKNLSLAYNRLEGSINIEELDS-LSNLEGLDMSDNE-IDNLVVPKDYRGLRKLRFLDLSGLRI  163 (892)
Q Consensus        99 ~l~~L~~L~Ls~n~l~~~i~~~~l~~-l~~L~~L~L~~n~-i~~~~~~~~~~~l~~L~~L~L~~n~i  163 (892)
                      .+++|+.|+++++...+.+....+.. +++|++|.+.+|. +++........+++.|++|+++.+..
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            44555555555554211222222222 5555555555554 44443333344555555555555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.35  E-value=0.0008  Score=77.22  Aligned_cols=36  Identities=25%  Similarity=0.210  Sum_probs=18.6

Q ss_pred             ccEEEccCCccCcc-CChhhhc-CCCCCEEeccccccc
Q 044158          576 LLTLDLCNNRLNGN-IPNWMGR-LSQLRYLILANNNFE  611 (892)
Q Consensus       576 L~~L~L~~n~l~~~-~p~~~~~-l~~L~~L~L~~n~l~  611 (892)
                      ++.|+++.+..... .-..... +..++.+++.++...
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI  440 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence            67777777654311 1111122 556666777666543

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.71  E-value=0.0048  Score=43.25  Aligned_cols=17  Identities=47%  Similarity=1.116  Sum_probs=10.4

Q ss_pred             CCCCC-CCCCcccceeEec
Q 044158            1 WVDES-YSDCCQWQSVLCN   18 (892)
Q Consensus         1 w~~~~-~~~~c~w~gv~c~   18 (892)
                      |+ .. .++||.|.||+|+
T Consensus        26 W~-~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen   26 WN-PSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             ---TT--S-CCCSTTEEE-
T ss_pred             CC-CcCCCCCeeeccEEeC
Confidence            56 33 3799999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.48  E-value=0.0045  Score=36.04  Aligned_cols=12  Identities=58%  Similarity=0.744  Sum_probs=5.2

Q ss_pred             CCEEEccCccCC
Q 044158          724 IHTLNLSRNNLT  735 (892)
Q Consensus       724 L~~L~Ls~N~l~  735 (892)
                      |+.|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.32  E-value=0.0081  Score=34.95  Aligned_cols=19  Identities=58%  Similarity=0.726  Sum_probs=10.6

Q ss_pred             CCEEECCCCcCcccCCcccc
Q 044158          748 VESLDLSYNNLTGKIPPRLV  767 (892)
Q Consensus       748 L~~LdLs~N~l~g~ip~~l~  767 (892)
                      |++|||++|+++ .+|.+|.
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            555666666665 5555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.05  E-value=0.00078  Score=74.92  Aligned_cols=186  Identities=25%  Similarity=0.265  Sum_probs=90.3

Q ss_pred             CCEEeCCCCCCCCc----ccccccCCCCCCEEecCCcccccCCChh----hhcCC-CCCCEEeCCCCCCCCccc---ccc
Q 044158           79 LKFLDLSHNSFNNS----VLSSLAGLSSLKNLSLAYNRLEGSINIE----ELDSL-SNLEGLDMSDNEIDNLVV---PKD  146 (892)
Q Consensus        79 L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~Ls~n~l~~~i~~~----~l~~l-~~L~~L~L~~n~i~~~~~---~~~  146 (892)
                      +.+|.|.+|.+...    +...+...+.|..|++++|.+.. -...    .+... ..|++|++..|.++....   ...
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~-~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGD-EGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCcc-HhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            55555555555432    22233445555555555555441 1110    11111 334555555555544321   122


Q ss_pred             ccCCCCCcEEeCCCCcCCCCc--ccccccc----CCCCCCEEECCCCCCCCcc--CCcccccCCCC-CcEEEccCCcCcc
Q 044158          147 YRGLRKLRFLDLSGLRIRDGS--KVLHSIG----SFPSLKTLYLKSNNFAKTV--TTTQGLCELAH-LQELYIDHNDFIG  217 (892)
Q Consensus       147 ~~~l~~L~~L~L~~n~i~~~~--~~~~~l~----~l~~L~~L~L~~n~l~~~~--~~~~~l~~l~~-L~~L~L~~n~l~~  217 (892)
                      +.....++.++++.|.+....  .+...+.    ...++++|++++|.++...  .....+...++ +..|++..|.+.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            344555555666655553210  0112222    3556666777666654211  11112333444 5567777776654


Q ss_pred             C----ccccccCC-CCCcEEeCCCCCcccccC---CCcccccccCcEEeccCcccc
Q 044158          218 S----LPWCLANL-TSLRVLHVPDNQLTENLS---SSPLMHLTSIELLILSNNHFQ  265 (892)
Q Consensus       218 ~----~~~~l~~l-~~L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~L~~n~l~  265 (892)
                      .    ....+..+ ..++.++++.|.+++.-.   ...+..++.++++.++.|.+.
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            3    22334444 567788888887765220   123445667888888888665

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.99  E-value=0.12  Score=27.75  Aligned_cols=11  Identities=55%  Similarity=0.767  Sum_probs=3.2

Q ss_pred             CCEEECCCCcC
Q 044158          748 VESLDLSYNNL  758 (892)
Q Consensus       748 L~~LdLs~N~l  758 (892)
                      |+.|++++|+|
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33344444333

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=89.98  E-value=0.0042  Score=69.24  Aligned_cols=190  Identities=26%  Similarity=0.246  Sum_probs=126.2

Q ss_pred             CcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCccccc----ccCC-CCCCEEecCCcccccC----CChhh
Q 044158           51 LESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSS----LAGL-SSLKNLSLAYNRLEGS----INIEE  121 (892)
Q Consensus        51 L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----l~~l-~~L~~L~Ls~n~l~~~----i~~~~  121 (892)
                      +..|.|.+|.+..-....-...+...++|..|++++|.+.+.....    +... ..|++|++..|.+++.    +. ..
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~-~~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLA-AV  167 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHH-HH
Confidence            7788888888765443333455677888888999998887543332    3333 5677788888877632    22 24


Q ss_pred             hcCCCCCCEEeCCCCCCCCcc---ccccc----cCCCCCcEEeCCCCcCCCCc--cccccccCCCC-CCEEECCCCCCCC
Q 044158          122 LDSLSNLEGLDMSDNEIDNLV---VPKDY----RGLRKLRFLDLSGLRIRDGS--KVLHSIGSFPS-LKTLYLKSNNFAK  191 (892)
Q Consensus       122 l~~l~~L~~L~L~~n~i~~~~---~~~~~----~~l~~L~~L~L~~n~i~~~~--~~~~~l~~l~~-L~~L~L~~n~l~~  191 (892)
                      +.....++.++++.|.+....   ....+    ....++++|.++++.++...  .+...+...+. +.+|++..|.+.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            556788888888888775322   11223    34678899999998887431  12234555566 7779999887753


Q ss_pred             c--cCCcccccCC-CCCcEEEccCCcCccCc----cccccCCCCCcEEeCCCCCccc
Q 044158          192 T--VTTTQGLCEL-AHLQELYIDHNDFIGSL----PWCLANLTSLRVLHVPDNQLTE  241 (892)
Q Consensus       192 ~--~~~~~~l~~l-~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~  241 (892)
                      .  ......+..+ ..+++++++.|.++...    ...+..++.++++.+..|.+..
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            3  1111233444 67899999999987654    3456677899999999999865

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.05  E-value=0.049  Score=51.53  Aligned_cols=83  Identities=30%  Similarity=0.312  Sum_probs=50.6

Q ss_pred             CCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhc-CCCCCCEEeCCCCC-CCCccccccccCCCCCcE
Q 044158           78 NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELD-SLSNLEGLDMSDNE-IDNLVVPKDYRGLRKLRF  155 (892)
Q Consensus        78 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~-~l~~L~~L~L~~n~-i~~~~~~~~~~~l~~L~~  155 (892)
                      .++.+|-+++.|..+..+.+.+++.++.|.+.+|.--+.--.+-++ -.++|+.|++++|. |++.... .+..+++|+.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhhhhHH
Confidence            4567777777777777777777778888877776522111111111 23677788888764 5554332 3666677777


Q ss_pred             EeCCCC
Q 044158          156 LDLSGL  161 (892)
Q Consensus       156 L~L~~n  161 (892)
                      |.+.+-
T Consensus       181 L~l~~l  186 (221)
T KOG3864|consen  181 LHLYDL  186 (221)
T ss_pred             HHhcCc
Confidence            766653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.63  E-value=0.011  Score=56.74  Aligned_cols=84  Identities=20%  Similarity=0.173  Sum_probs=39.6

Q ss_pred             CCCCCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCC
Q 044158           46 TPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSL  125 (892)
Q Consensus        46 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l  125 (892)
                      +.++..+.||++.|.+.....     .|+.++.|..||++.|.+. ..|..++....++.+++..|..+ ..|. .++..
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~-----n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~k~  110 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGK-----NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQKKE  110 (326)
T ss_pred             hccceeeeehhhhhHHHhhcc-----chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-ccccc
Confidence            344555555555554432221     2444445555555555544 33445555555555555555444 3343 44444


Q ss_pred             CCCCEEeCCCCC
Q 044158          126 SNLEGLDMSDNE  137 (892)
Q Consensus       126 ~~L~~L~L~~n~  137 (892)
                      ++++++++.++.
T Consensus       111 ~~~k~~e~k~~~  122 (326)
T KOG0473|consen  111 PHPKKNEQKKTE  122 (326)
T ss_pred             CCcchhhhccCc
Confidence            444444444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.50  E-value=0.56  Score=28.45  Aligned_cols=19  Identities=32%  Similarity=0.480  Sum_probs=9.4

Q ss_pred             CCCCEEecCCcccccCCChh
Q 044158          101 SSLKNLSLAYNRLEGSINIE  120 (892)
Q Consensus       101 ~~L~~L~Ls~n~l~~~i~~~  120 (892)
                      ++|++|+|++|.+. .+|..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            34555555555554 44443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.50  E-value=0.56  Score=28.45  Aligned_cols=19  Identities=32%  Similarity=0.480  Sum_probs=9.4

Q ss_pred             CCCCEEecCCcccccCCChh
Q 044158          101 SSLKNLSLAYNRLEGSINIE  120 (892)
Q Consensus       101 ~~L~~L~Ls~n~l~~~i~~~  120 (892)
                      ++|++|+|++|.+. .+|..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            34555555555554 44443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.06  E-value=0.024  Score=54.55  Aligned_cols=83  Identities=20%  Similarity=0.255  Sum_probs=69.0

Q ss_pred             CccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEc
Q 044158          698 ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTV  777 (892)
Q Consensus       698 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~l  777 (892)
                      ...+.||++.|++. ..-..|.-++.+..|+++.|++. ..|..++.+..+..+++..|.++ ..|.++..++.++++++
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            35678999999886 34456777888889999999887 77888888888999999999888 77888999999999999


Q ss_pred             cCCccc
Q 044158          778 AHNNLS  783 (892)
Q Consensus       778 s~N~l~  783 (892)
                      -.|.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            888764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.97  E-value=0.63  Score=28.22  Aligned_cols=21  Identities=48%  Similarity=0.553  Sum_probs=13.7

Q ss_pred             CCCcEEECcCCcCccccchhHh
Q 044158          428 NSLIYLDLSNNQLTGEIPEHLA  449 (892)
Q Consensus       428 ~~L~~L~L~~n~l~~~i~~~~~  449 (892)
                      ++|+.|+|++|++. .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            46667777777766 6666554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.97  E-value=0.63  Score=28.22  Aligned_cols=21  Identities=48%  Similarity=0.553  Sum_probs=13.7

Q ss_pred             CCCcEEECcCCcCccccchhHh
Q 044158          428 NSLIYLDLSNNQLTGEIPEHLA  449 (892)
Q Consensus       428 ~~L~~L~L~~n~l~~~i~~~~~  449 (892)
                      ++|+.|+|++|++. .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            46667777777766 6666554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.49  E-value=0.23  Score=47.15  Aligned_cols=81  Identities=20%  Similarity=0.158  Sum_probs=35.5

Q ss_pred             CcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCC-cccccccCCCCccEEEccCC-ccCccCChhhhcCCCCCEEe
Q 044158          527 LDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR-PLNGAFSKCSYLLTLDLCNN-RLNGNIPNWMGRLSQLRYLI  604 (892)
Q Consensus       527 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~  604 (892)
                      ++.++-++..+..+--+.+.+++.++.|.+.+|.--+- -+...-+..++|+.|++++| +|+..--.++..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            34444444444433333444444555555544431110 00000012356666666655 34433334555566666665


Q ss_pred             ccc
Q 044158          605 LAN  607 (892)
Q Consensus       605 L~~  607 (892)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.18  E-value=0.23  Score=29.47  Aligned_cols=13  Identities=54%  Similarity=0.792  Sum_probs=5.1

Q ss_pred             CCCEEECCCCcCc
Q 044158          747 QVESLDLSYNNLT  759 (892)
Q Consensus       747 ~L~~LdLs~N~l~  759 (892)
                      +|+.|||++|+|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4444444444444

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	892
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-54
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-28
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-54
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		9e-28
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-11
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		7e-09
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		2e-08

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  209 bits (533), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 209/696 (30%), Positives = 322/696 (46%), Gaps = 72/696 (10%)
Query: 147 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQ 206
           ++    L  LDLS   +      L S+GS   LK L + SN        + GL +L  L+
Sbjct: 93  FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLE 151
Query: 207 ELYIDHNDFIGS--LPWCLAN-LTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNH 263
            L +  N   G+  + W L++    L+ L +  N+++ ++  S  ++L   E L +S+N+
Sbjct: 152 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNL---EFLDVSSNN 208
Query: 264 FQIPMSLEPFF-NYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTI 322
           F   +   PF  + S L+      N++ G+   + S+ T + +L +IS +       G I
Sbjct: 209 FSTGI---PFLGDCSALQHLDISGNKLSGDFSRAISTCT-ELKLLNISSNQFV----GPI 260
Query: 323 PKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNII 382
           P        L+++ +++    GE P +L      L  + L+ N   G       S   + 
Sbjct: 261 PPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 383 ALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMN-SLIYLDLSNNQLT 441
           +L +S N   G +P++    +  L  L +SFN F+G +P S  +++ SL+ LDLS+N  +
Sbjct: 319 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
Query: 442 GEIPEHLAMGCFNLEYXXXXXXXXXXXXFSKKINLTKLKRLNLDGNHFIGGIPESLSNCS 501
           G I  +L   C N +                      L+ L L  N F G IP +LSNCS
Sbjct: 379 GPILPNL---CQNPK--------------------NTLQELYLQNNGFTGKIPPTLSNCS 415
Query: 502 SLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 561
            L  L++S N +SG+IP+ +G++S L  + +  N LEG IP E   +  LE L L  N++
Sbjct: 416 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 475
Query: 562 AGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPXXXXXX 621
            G   +G  S C+ L  + L NNRL G IP W+GRL  L  L L+NN+F G +P      
Sbjct: 476 TGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 622 XXXXXXXXSHNNFSGQIPPCLDNTSLHREEG--YYDLIPTYRNEYDIVSYNVGPSMGEKE 679
                   + N F+G IP      ++ ++ G    + I   R  Y           G   
Sbjct: 535 RSLIWLDLNTNLFNGTIP-----AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 680 TIDFT-----------------TKERSYTYKGQPLESIHG----LDLSCNKLIGEIPSRI 718
            ++F                     R Y     P    +G    LD+S N L G IP  I
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 719 GELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA 778
           G +  +  LNL  N+++G+IP    +LR +  LDLS N L G+IP  +  L  L    ++
Sbjct: 650 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 709
Query: 779 HNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPK 814
           +NNLSG IPE + QF TF    +  NP LCG PLP+
Sbjct: 710 NNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPR 744

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  122 bits (307), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 152/509 (29%), Positives = 227/509 (44%), Gaps = 72/509 (14%)
Query: 293 IESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISD--VNMRGEFPSWL 350
           I  S S       LTS+ LS +  S   T    L     L+F+ +S   ++  G+    L
Sbjct: 86  INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 145
Query: 351 LENNTNLRSIILANNSLSGPFRLP---TRSRKNIIALDISYNKLQGHIPVEIGKVLPNLG 407
             N+  L  + L+ NS+SG   +    +     +  L IS NK+ G   V++ + + NL 
Sbjct: 146 KLNS--LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCV-NLE 200
Query: 408 FLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXXX 467
           FL +S N F+  IP   GD ++L +LD+S N+L+G+                        
Sbjct: 201 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD------------------------ 235
Query: 468 XXFSKKIN-LTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWM-GNIS 525
             FS+ I+  T+LK LN+  N F+G IP       SLQ L +++N  +G IP ++ G   
Sbjct: 236 --FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD 291
Query: 526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNR 585
            L  + +  NH  G +P  F     LE L LS NN +G        K   L  LDL  N 
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 586 LNGNIPNWMGRLS-QLRYLILANNNFEGEV-PXXXXXXXXXXXXXXSHNN-FSGQIPPCL 642
            +G +P  +  LS  L  L L++NNF G + P                NN F+G+IPP L
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 643 DNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHG 702
            N S        +L+  +   ++ +S  +  S+G                    L  +  
Sbjct: 412 SNCS--------ELVSLHL-SFNYLSGTIPSSLGS-------------------LSKLRD 443
Query: 703 LDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKI 762
           L L  N L GEIP  +  +  + TL L  N+LTG IP   SN   +  + LS N LTG+I
Sbjct: 444 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 503
Query: 763 PPRLVELNALAVFTVAHNNLSGKIPERIA 791
           P  +  L  LA+  +++N+ SG IP  + 
Sbjct: 504 PKWIGRLENLAILKLSNNSFSGNIPAELG 532

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  209 bits (532), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 209/696 (30%), Positives = 322/696 (46%), Gaps = 72/696 (10%)
Query: 147 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQ 206
           ++    L  LDLS   +      L S+GS   LK L + SN        + GL +L  L+
Sbjct: 96  FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLE 154
Query: 207 ELYIDHNDFIGS--LPWCLAN-LTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNH 263
            L +  N   G+  + W L++    L+ L +  N+++ ++  S  ++L   E L +S+N+
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNL---EFLDVSSNN 211
Query: 264 FQIPMSLEPFF-NYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTI 322
           F   +   PF  + S L+      N++ G+   + S+ T + +L +IS +       G I
Sbjct: 212 FSTGI---PFLGDCSALQHLDISGNKLSGDFSRAISTCT-ELKLLNISSNQFV----GPI 263
Query: 323 PKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNII 382
           P        L+++ +++    GE P +L      L  + L+ N   G       S   + 
Sbjct: 264 PPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 383 ALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMN-SLIYLDLSNNQLT 441
           +L +S N   G +P++    +  L  L +SFN F+G +P S  +++ SL+ LDLS+N  +
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Query: 442 GEIPEHLAMGCFNLEYXXXXXXXXXXXXFSKKINLTKLKRLNLDGNHFIGGIPESLSNCS 501
           G I  +L   C N +                      L+ L L  N F G IP +LSNCS
Sbjct: 382 GPILPNL---CQNPK--------------------NTLQELYLQNNGFTGKIPPTLSNCS 418
Query: 502 SLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 561
            L  L++S N +SG+IP+ +G++S L  + +  N LEG IP E   +  LE L L  N++
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478
Query: 562 AGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPXXXXXX 621
            G   +G  S C+ L  + L NNRL G IP W+GRL  L  L L+NN+F G +P      
Sbjct: 479 TGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 622 XXXXXXXXSHNNFSGQIPPCLDNTSLHREEG--YYDLIPTYRNEYDIVSYNVGPSMGEKE 679
                   + N F+G IP      ++ ++ G    + I   R  Y           G   
Sbjct: 538 RSLIWLDLNTNLFNGTIP-----AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 680 TIDF-----------------TTKERSYTYKGQPLESIHG----LDLSCNKLIGEIPSRI 718
            ++F                     R Y     P    +G    LD+S N L G IP  I
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Query: 719 GELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA 778
           G +  +  LNL  N+++G+IP    +LR +  LDLS N L G+IP  +  L  L    ++
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712
Query: 779 HNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPK 814
           +NNLSG IPE + QF TF    +  NP LCG PLP+
Sbjct: 713 NNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPR 747

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  122 bits (306), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 152/509 (29%), Positives = 227/509 (44%), Gaps = 72/509 (14%)
Query: 293 IESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISD--VNMRGEFPSWL 350
           I  S S       LTS+ LS +  S   T    L     L+F+ +S   ++  G+    L
Sbjct: 89  INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148
Query: 351 LENNTNLRSIILANNSLSGPFRLP---TRSRKNIIALDISYNKLQGHIPVEIGKVLPNLG 407
             N+  L  + L+ NS+SG   +    +     +  L IS NK+ G   V++ + + NL 
Sbjct: 149 KLNS--LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCV-NLE 203
Query: 408 FLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXXX 467
           FL +S N F+  IP   GD ++L +LD+S N+L+G+                        
Sbjct: 204 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD------------------------ 238
Query: 468 XXFSKKIN-LTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWM-GNIS 525
             FS+ I+  T+LK LN+  N F+G IP       SLQ L +++N  +G IP ++ G   
Sbjct: 239 --FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD 294
Query: 526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNR 585
            L  + +  NH  G +P  F     LE L LS NN +G        K   L  LDL  N 
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 586 LNGNIPNWMGRLS-QLRYLILANNNFEGEV-PXXXXXXXXXXXXXXSHNN-FSGQIPPCL 642
            +G +P  +  LS  L  L L++NNF G + P                NN F+G+IPP L
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 643 DNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHG 702
            N S        +L+  +   ++ +S  +  S+G                    L  +  
Sbjct: 415 SNCS--------ELVSLHL-SFNYLSGTIPSSLGS-------------------LSKLRD 446
Query: 703 LDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKI 762
           L L  N L GEIP  +  +  + TL L  N+LTG IP   SN   +  + LS N LTG+I
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Query: 763 PPRLVELNALAVFTVAHNNLSGKIPERIA 791
           P  +  L  LA+  +++N+ SG IP  + 
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELG 535

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 105/226 (46%), Gaps = 11/226 (4%)
Query: 517 IPTWMGNISFLDAIIMPD-NHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSY 575
           IP+ + N+ +L+ + +   N+L GPIP    +L  L  L ++  N++G  +    S+   
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKT 126
Query: 576 LLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPXXXXXXXXX-XXXXXSHNNF 634
           L+TLD   N L+G +P  +  L  L  +    N   G +P               S N  
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 635 SGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKG 694
           +G+IPP   N +L     + DL    RN  +  +  +  S    + I       ++    
Sbjct: 187 TGKIPPTFANLNL----AFVDL---SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239
Query: 695 QPL-ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIP 739
             L ++++GLDL  N++ G +P  + +L  +H+LN+S NNL G IP
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 124/312 (39%), Gaps = 55/312 (17%)
Query: 519 TWMGNISFLDAIIMPDNHLE---------GPIPSEFCQLDYLEILDLSKNNIAGRPLNGA 569
           TW+G +   D      N+L+          PIPS    L YL  L      I G      
Sbjct: 37  TWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL-----YIGGI----- 86
Query: 570 FSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPXXXXXXXXXXXXXX 629
                         N L G IP  + +L+QL YL + + N  G +P              
Sbjct: 87  --------------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 630 SHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGE--KETIDFTTKE 687
           S+N  SG +PP +  +SL    G      T+  + + +S  +  S G   K     T   
Sbjct: 133 SYNALSGTLPPSI--SSLPNLVGI-----TF--DGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 688 RSYTYKGQPLES---IHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLT---GTIPVT 741
              T K  P  +   +  +DLS N L G+     G       ++L++N+L    G + ++
Sbjct: 184 NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243
Query: 742 FSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSY 801
               + +  LDL  N + G +P  L +L  L    V+ NNL G+IP+       FD  +Y
Sbjct: 244 ----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298
Query: 802 EGNPFLCGPPLP 813
             N  LCG PLP
Sbjct: 299 ANNKCLCGSPLP 310

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 64/130 (49%)
Query: 708 NKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLV 767
           N L+G IP  I +L ++H L ++  N++G IP   S ++ + +LD SYN L+G +PP + 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 768 ELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENRSSTEAST 827
            L  L   T   N +SG IP+    F+            L G   P   N N +  + S 
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206
Query: 828 HDNEEDDNLI 837
           +  E D +++
Sbjct: 207 NMLEGDASVL 216

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 21/181 (11%)
Query: 109 AYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSK 168
           A+N   G   IE +  L+NL GL++ DN+I +L      + L K+  L+LSG  +++ S 
Sbjct: 54  AFNT--GVTTIEGIQYLNNLIGLELKDNQITDLT---PLKNLTKITELELSGNPLKNVS- 107
Query: 169 VLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTS 228
              +I    S+KTL L S      +T    L  L++LQ LY+D N      P  LA LT+
Sbjct: 108 ---AIAGLQSIKTLDLTSTQ----ITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTN 158
Query: 229 LRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQ 288
           L+ L + +NQ+ +    +PL +L+ +  L   +N       + P  +   L   H ++NQ
Sbjct: 159 LQYLSIGNNQVND---LTPLANLSKLTTLRADDNKIS---DISPLASLPNLIEVHLKDNQ 212
Query: 289 I 289
           I
Sbjct: 213 I 213

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 19/175 (10%)
Query: 115 GSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIG 174
           G   IE +  L+NL GL++ DN+I +L      + L K+  L+LSG  +++    + +I 
Sbjct: 52  GVTTIEGVQYLNNLIGLELKDNQITDLA---PLKNLTKITELELSGNPLKN----VSAIA 104
Query: 175 SFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHV 234
              S+KTL L S      +T    L  L++LQ LY+D N      P  LA LT+L+ L +
Sbjct: 105 GLQSIKTLDLTSTQ----ITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI 158
Query: 235 PDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQI 289
            + Q+++    +PL +L+ +  L   +N       + P  +   L   H + NQI
Sbjct: 159 GNAQVSD---LTPLANLSKLTTLKADDNKIS---DISPLASLPNLIEVHLKNNQI 207

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	892
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-54
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-75
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-63
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-45
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-67
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-65
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-64
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-60
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-53
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-64
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-40
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-60
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-33
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-60
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-58
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-52
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-50
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-48
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-45
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-28
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-28
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-27
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-26
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-26
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-26
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-23
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-23
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-19
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-12
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-12
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-10
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  541 bits (1396), Expect = 0.0
 Identities = 222/835 (26%), Positives = 343/835 (41%), Gaps = 113/835 (13%)

Query: 7   SDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVE 66
            + C +  V C     +V +IDL S  +        S       LESL LS ++I G   
Sbjct: 37  KNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING--- 91

Query: 67  NEGLEKLSGLSNLKFLDLSHNSFNNSV--LSSLAGLSSLKNLSLAYNRLEGSINIEELDS 124
              +      ++L  LDLS NS +  V  L+SL   S LK L+++ N L+    +     
Sbjct: 92  --SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 149

Query: 125 LSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYL 184
           L++LE LD+S N                     +SG                  LK L +
Sbjct: 150 LNSLEVLDLSAN--------------------SISG----ANVVGWVLSDGCGELKHLAI 185

Query: 185 KSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLS 244
             N  +  V     +    +L+ L +  N+F   +P+ L + ++L+ L +  N+L+ + S
Sbjct: 186 SGNKISGDV----DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS 240

Query: 245 SSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKF 304
            + +   T ++LL +S+N F  P+   P      L+     EN+  GEI    S      
Sbjct: 241 RA-ISTCTELKLLNISSNQFVGPI---PPLPLKSLQYLSLAENKFTGEIPDFLSGACDT- 295

Query: 305 QLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILAN 364
            LT + LS +     G +P F      LE + +S  N  GE P   L     L+ + L+ 
Sbjct: 296 -LTGLDLSGNHFY--GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352

Query: 365 NSLSGPFRLPT---RSRKNIIALDISYNKLQGHIPVEIGKV-LPNLGFLTISFNAFNGSI 420
           N  SG   LP        +++ LD+S N   G I   + +     L  L +  N F G I
Sbjct: 353 NEFSGE--LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410

Query: 421 PSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLK 480
           P +  + + L+ L LS N L+G IP  L      L  L L  N L+G++  + + +  L+
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLE 469

Query: 481 RLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGP 540
            L LD N   G IP  LSNC++L  + +S+N ++G IP W+G +  L  + + +N   G 
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529

Query: 541 IPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQL 600
           IP+E      L  LDL+ N       NG      +  +  +  N + G    ++      
Sbjct: 530 IPAELGDCRSLIWLDLNTNL-----FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584

Query: 601 RYLILANN--NFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIP 658
           +    A N   F+G    +L +L      +++   + G   P  DN              
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN-------------- 630

Query: 659 TYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRI 718
                                                   S+  LD+S N L G IP  I
Sbjct: 631 --------------------------------------NGSMMFLDMSYNMLSGYIPKEI 652

Query: 719 GELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA 778
           G +  +  LNL  N+++G+IP    +LR +  LDLS N L G+IP  +  L  L    ++
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712

Query: 779 HNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENRSSTEASTHDNEED 833
           +NNLSG IPE + QF TF    +  NP LCG PLP+    N          +   
Sbjct: 713 NNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  282 bits (724), Expect = 6e-84
 Identities = 135/765 (17%), Positives = 232/765 (30%), Gaps = 144/765 (18%)

Query: 48  FQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLS 107
              +  L+L+ N +            +  S L  LD+  N+ +         L  LK L+
Sbjct: 24  PTNITVLNLTHNQLRRLPAAN----FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 108 LAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGS 167
           L +N L   ++ +     +NL  L +  N I  +     +   + L  LDLS   +    
Sbjct: 80  LQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIK-NNPFVKQKNLITLDLSHNGLSSTK 137

Query: 168 KVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLT 227
             L +     +L+ L L +N      +    +   + L++L +  N      P C   + 
Sbjct: 138 --LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 228 SLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGREN 287
            L  L + + QL  +                       +   L      + ++      +
Sbjct: 196 RLFGLFLNNVQLGPS-----------------------LTEKLCLELANTSIRNLSLSNS 232

Query: 288 QIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFP 347
           Q+     ++   L     LT + LS +  +              LE+  +   N++  F 
Sbjct: 233 QLSTTSNTTFLGL-KWTNLTMLDLSYNNLN--VVGNDSFAWLPQLEYFFLEYNNIQHLFS 289

Query: 348 SWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLG 407
             L     N+R + L  +                    IS   L           L  L 
Sbjct: 290 HSL-HGLFNVRYLNLKRSFTK---------------QSISLASLPKIDDFSFQW-LKCLE 332

Query: 408 FLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG 467
            L +  N   G   + F  + +L YL LSN+  +                  L+N +   
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT---------------LTNETFVS 377

Query: 468 QLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFL 527
                 +  + L  LNL  N       ++ S    L+ L +  N+I   +          
Sbjct: 378 ------LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT--------- 422

Query: 528 DAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLN 587
                           E+  L+ +  + LS N         +F+    L  L L    L 
Sbjct: 423 --------------GQEWRGLENIFEIYLSYNKYLQLT-RNSFALVPSLQRLMLRRVALK 467

Query: 588 G--NIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNT 645
              + P+    L  L  L L+NNN        L  L+KL +LDL HNN +          
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA---------- 517

Query: 646 SLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDL 705
                                              +          Y  + L  +H L+L
Sbjct: 518 ----------------------------------RLWKHANPGGPIYFLKGLSHLHILNL 543

Query: 706 SCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPR 765
             N           +L  +  ++L  NNL       F+N   ++SL+L  N +T      
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

Query: 766 L-VELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCG 809
                  L    +  N       E IA F  +  +++   P L  
Sbjct: 604 FGPAFRNLTELDMRFNPFDC-TCESIAWFVNWINETHTNIPELSS 647

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  251 bits (643), Expect = 1e-72
 Identities = 112/614 (18%), Positives = 212/614 (34%), Gaps = 60/614 (9%)

Query: 45  FTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLK 104
                 L+ L+L  N ++   +       +  +NL  L L  NS      +      +L 
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKT----FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124

Query: 105 NLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLV-VPKDYRGLRKLRFLDLSGLRI 163
            L L++N L  S  +     L NL+ L +S+N+I  L     D      L+ L+LS  +I
Sbjct: 125 TLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 164 RDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGL-CELAHLQELYIDHNDFIGSLPWC 222
           ++ S       +   L  L+L +     ++T    L      ++ L + ++    +    
Sbjct: 184 KEFSP--GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 223 LANL--TSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEP--FFNYSK 278
              L  T+L +L +  N L   + +     L  +E   L  N+ Q    L          
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQ---HLFSHSLHGLFN 297

Query: 279 LKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIIS 338
           ++  + + +     I  +         L  I                      LE + + 
Sbjct: 298 VRYLNLKRSFTKQSISLA--------SLPKI------------DDFSFQWLKCLEHLNME 337

Query: 339 DVNMRGEFPSWLLENNTNLRSIILANNSLSG----PFRLPTRSRKNIIALDISYNKLQGH 394
           D N      S +     NL+ + L+N+  S          + +   +  L+++ NK+   
Sbjct: 338 D-NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396

Query: 395 IPVEIGKVLPNLGFLTISFNAFNGSIP-SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF 453
                   L +L  L +  N     +    +  + ++  + LS N+         A    
Sbjct: 397 ESDAFSW-LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVP 454

Query: 454 NLEYLLLSNNSLQGQLFSKKI--NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDN 511
           +L+ L+L   +L+    S      L  L  L+L  N+      + L     L+ L +  N
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514

Query: 512 DIS--------GSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG 563
           +++        G    ++  +S L  + +  N  +      F  L  L+I+DL  NN+  
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 564 RPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGR-LSQLRYLILANNNFEGEVPLRLCQLQ 622
            P    F+    L +L+L  N +        G     L  L +  N F+           
Sbjct: 575 LP-ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES---IAW 630

Query: 623 KLRLLDLSHNNFSG 636
            +  ++ +H N   
Sbjct: 631 FVNWINETHTNIPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  209 bits (535), Expect = 8e-58
 Identities = 99/565 (17%), Positives = 187/565 (33%), Gaps = 88/565 (15%)

Query: 252 TSIELLILSNNHF-QIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSIS 310
            S E+   S+    Q+P  L      + + + +   NQ+     ++ +  +   QLTS+ 
Sbjct: 4   VSHEVADCSHLKLTQVPDDLP-----TNITVLNLTHNQLRRLPAANFTRYS---QLTSLD 55

Query: 311 LSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGP 370
           +  +  S     P+       L+ + +    +            TNL  + L +NS+   
Sbjct: 56  VGFNTIS--KLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKI 112

Query: 371 FRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMN-- 428
              P   +KN+I LD+S+N L         + L NL  L +S N                
Sbjct: 113 KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANS 171

Query: 429 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQL---FSKKINLTKLKRLNLD 485
           SL  L+LS+NQ+    P         L  L L+N  L   L      ++  T ++ L+L 
Sbjct: 172 SLKKLELSSNQIKEFSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 486 GNHFIGGIPESLSNC--SSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPS 543
            +        +      ++L  L +S N+++         +  L+   +  N+++     
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

Query: 544 EFCQLDYLEILDLSKNNIAG--------RPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMG 595
               L  +  L+L ++            +  + +F     L  L++ +N + G   N   
Sbjct: 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350

Query: 596 RLSQLRYLILANNNFEGEVP----LRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREE 651
            L  L+YL L+N+                   L +L+L+ N  S                
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW------- 403

Query: 652 GYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLI 711
                                                        L  +  LDL  N++ 
Sbjct: 404 ---------------------------------------------LGHLEVLDLGLNEIG 418

Query: 712 GEIPSR-IGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG--KIPPRLVE 768
            E+  +    L  I  + LS N        +F+ +  ++ L L    L      P     
Sbjct: 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478

Query: 769 LNALAVFTVAHNNLSGKIPERIAQF 793
           L  L +  +++NN++    + +   
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGL 503

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  199 bits (509), Expect = 2e-54
 Identities = 85/445 (19%), Positives = 158/445 (35%), Gaps = 36/445 (8%)

Query: 354 NTNLRSIILANNSLSG-PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTIS 412
             +      ++  L+  P  LPT    NI  L++++N+L+        +    L  L + 
Sbjct: 3   TVSHEVADCSHLKLTQVPDDLPT----NITVLNLTHNQLRRLPAANFTR-YSQLTSLDVG 57

Query: 413 FNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSK 472
           FN  +   P     +  L  L+L +N+L+    +  A  C NL  L L +NS+Q    + 
Sbjct: 58  FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKNNP 116

Query: 473 KINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNI--SFLDAI 530
            +    L  L+L  N        +     +LQ L +S+N I       +     S L  +
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 531 IMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKC--SYLLTLDLCNNRLNG 588
            +  N ++   P  F  +  L  L L+   +          +   + +  L L N++L+ 
Sbjct: 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236

Query: 589 NIPNWMG--RLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTS 646
                    + + L  L L+ NN           L +L    L +NN        L    
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296

Query: 647 LHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLS 706
                            Y  +  +       K++I   +  +   +  Q L+ +  L++ 
Sbjct: 297 --------------NVRYLNLKRSF-----TKQSISLASLPKIDDFSFQWLKCLEHLNME 337

Query: 707 CNKLIGEIPSRIGELIRIHTLNLSRNNLTGT--IPVTFSNLRQV--ESLDLSYNNLTGKI 762
            N + G   +    LI +  L+LS +  +       TF +L       L+L+ N ++   
Sbjct: 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397

Query: 763 PPRLVELNALAVFTVAHNNLSGKIP 787
                 L  L V  +  N +  ++ 
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELT 422

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  180 bits (459), Expect = 7e-48
 Identities = 94/498 (18%), Positives = 166/498 (33%), Gaps = 59/498 (11%)

Query: 27  IDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSH 86
           + L ++ +  +L     L      + +L LS + ++    +         +NL  LDLS+
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST--TSNTTFLGLKWTNLTMLDLSY 257

Query: 87  NSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI--------NIEELDSLSNLEGLDMSDNEI 138
           N+ N     S A L  L+   L YN ++           N+  L+   +     +S   +
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317

Query: 139 DNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQG 198
             +     ++ L+ L  L++    I       +      +LK L L ++  +    T + 
Sbjct: 318 PKI-DDFSFQWLKCLEHLNMEDNDIPGIKS--NMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 199 LCELAH--LQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIEL 256
              LAH  L  L +  N          + L  L VL +  N++ + L+      L +I  
Sbjct: 375 FVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFE 434

Query: 257 LILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGD 316
           + LS N +   ++   F     L+    R   +   ++SS S   P   LT + LS+   
Sbjct: 435 IYLSYNKYLQ-LTRNSFALVPSLQRLMLRRVALKN-VDSSPSPFQPLRNLTILDLSN--- 489

Query: 317 SDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLS-------- 368
                                   N        +LE    L  + L +N+L+        
Sbjct: 490 ------------------------NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 525

Query: 369 GPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMN 428
           G      +   ++  L++  N             L  L  + +  N  N    S F +  
Sbjct: 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD-LFELKIIDLGLNNLNTLPASVFNNQV 584

Query: 429 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG-----QLFSKKINLTKLKRLN 483
           SL  L+L  N +T    +       NL  L +  N           F   IN T      
Sbjct: 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPE 644

Query: 484 LDGNHFIGGIPESLSNCS 501
           L  +H++   P       
Sbjct: 645 LS-SHYLCNTPPHYHGFP 661

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.9 bits (195), Expect = 4e-15
 Identities = 35/223 (15%), Positives = 65/223 (29%), Gaps = 56/223 (25%)

Query: 572 KCS-YLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLS 630
           KC+      D  + +L   +P+ +   + +  L L +N           +  +L  LD+ 
Sbjct: 1   KCTVSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 631 HNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSY 690
            N  S   P                                                   
Sbjct: 58  FNTISKLEPELCQK---------------------------------------------- 71

Query: 691 TYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVES 750
                 L  +  L+L  N+L             +  L+L  N++       F   + + +
Sbjct: 72  ------LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125

Query: 751 LDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQF 793
           LDLS+N L+       V+L  L    +++N +     E +  F
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  256 bits (655), Expect = 7e-75
 Identities = 120/608 (19%), Positives = 208/608 (34%), Gaps = 54/608 (8%)

Query: 51  LESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAY 110
            ++LDLS N +                 L+ LDLS          +   LS L  L L  
Sbjct: 30  TKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 111 NRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVL 170
           N ++          LS+L+ L   +  + +L        L+ L+ L+++   I+   K+ 
Sbjct: 86  NPIQSLAL-GAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQ-SFKLP 142

Query: 171 HSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQ----ELYIDHNDFIGSLPWCLANL 226
               +  +L+ L L SN           L  L  +      L +  N      P     +
Sbjct: 143 EYFSNLTNLEHLDLSSNKI--QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 227 TSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRE 286
             L  L + +N  + N+  + +  L  +E+  L    F+   +LE F             
Sbjct: 201 -RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF------------- 246

Query: 287 NQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEF 346
                 +E   +    +F+L  +            I        ++    +  V +    
Sbjct: 247 --DKSALEGLCNLTIEEFRLAYLDYY------LDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 347 PSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNL 406
                  N   + + L N         PT   K++  L  + NK            LP+L
Sbjct: 299 D---FSYNFGWQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKGGNAFS---EVDLPSL 349

Query: 407 GFLTISFNAFN--GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNS 464
            FL +S N  +  G    S     SL YLDLS N +         +G   LE+L   +++
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSN 407

Query: 465 LQGQL-FSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSI-PTWMG 522
           L+    FS  ++L  L  L++   H         +  SSL+ L ++ N    +  P    
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 523 NISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLC 582
            +  L  + +    LE   P+ F  L  L++L++S NN         +   + L  LD  
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSLQVLDYS 526

Query: 583 NNRLNGNIPNWMGRL-SQLRYLILANNNFEGEVPLR--LCQLQKLRLLDLSHNNFSGQIP 639
            N +  +    +    S L +L L  N+F      +  L  ++  R L +         P
Sbjct: 527 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 586

Query: 640 PCLDNTSL 647
                  +
Sbjct: 587 SDKQGMPV 594

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  223 bits (571), Expect = 3e-63
 Identities = 115/650 (17%), Positives = 211/650 (32%), Gaps = 97/650 (14%)

Query: 126 SNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLK 185
            + + LD+S N + +L     +    +L+ LDLS   I+       +  S   L TL L 
Sbjct: 28  FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIED--GAYQSLSHLSTLILT 84

Query: 186 SNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSS 245
            N              L+ LQ+L     +      + + +L +L+ L+V  N +      
Sbjct: 85  GNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 246 SPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQ 305
               +LT++E L LS+N  Q            ++ + +   +     +         + +
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 306 LTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNT--NLRSIILA 363
           L  ++L ++ DS    +   +     LE   +     R E      + +    L ++ + 
Sbjct: 202 LHKLTLRNNFDS-LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 364 NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSS 423
              L+               LD   + +           L N+   ++           S
Sbjct: 261 EFRLAY--------------LDYYLDDIIDLF-----NCLTNVSSFSLVSVTIERVKDFS 301

Query: 424 FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLN 483
           +       +L+L N +        L           L+  S +G     +++L  L+ L+
Sbjct: 302 Y--NFGWQHLELVNCKFGQFPTLKL------KSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353

Query: 484 LDGNH--FIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPI 541
           L  N   F G   +S    +SL+ L +S N +      ++G    L+ +    ++L+   
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ-LEHLDFQHSNLKQMS 412

Query: 542 P-SEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNI-PNWMGRLSQ 599
             S F  L  L  LD+S  +      NG F+  S L  L +  N    N  P+    L  
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471

Query: 600 LRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPT 659
           L +L L+    E   P     L  L++L++SHNNF                         
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--------------- 516

Query: 660 YRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIG 719
                                                L S+  LD S N ++      + 
Sbjct: 517 -------------------------------------LNSLQVLDYSLNHIMTSKKQELQ 539

Query: 720 ELIR-IHTLNLSRNNLTGTIPVT--FSNLRQVESLDLSYNNLTGKIPPRL 766
                +  LNL++N+   T         ++    L +    +    P   
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  212 bits (543), Expect = 2e-59
 Identities = 102/634 (16%), Positives = 184/634 (29%), Gaps = 94/634 (14%)

Query: 176 FPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVP 235
             S K L L  N        +        LQ L +   +          +L+ L  L + 
Sbjct: 27  PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 236 DNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIES 295
            N +  +L+      L+S++ L+    +    +   P  +   LK  +   N I      
Sbjct: 85  GNPIQ-SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 296 SHSSLTPKFQ---LTSISLSDHGDSDGGTIPKFLYHQHHLEFVIIS---DVNMRGEFPSW 349
            + S     +   L+S  +              L   H +  + +S    +N        
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQ-------SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 350 LLENNTNLRSIILANNSLSG---PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNL 406
                  L  + L NN  S       +   +   +  L +   + +G++       L  L
Sbjct: 196 AF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 407 GFLTISFNAFN------GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLL 460
             LTI              I   F  + ++    L +  +            F  ++L L
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLEL 311

Query: 461 SNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDIS--GSIP 518
            N         K  +L +L   +  G         S  +  SL+ L +S N +S  G   
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 519 TWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLT 578
                 + L  + +  N +   + S F  L+ LE LD   +N+        F     L+ 
Sbjct: 367 QSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 579 LDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLR-LCQLQKLRLLDLSHNNFSGQ 637
           LD+ +             LS L  L +A N+F+         +L+ L  LDLS       
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 638 IPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPL 697
            P   ++                                                    L
Sbjct: 486 SPTAFNS----------------------------------------------------L 493

Query: 698 ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNL-RQVESLDLSYN 756
            S+  L++S N            L  +  L+ S N++  +      +    +  L+L+ N
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

Query: 757 NLTGKIPPR--LVELNALAVFTVAHNNLSGKIPE 788
           +       +  L  +       V    +    P 
Sbjct: 554 DFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 587

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  187 bits (476), Expect = 2e-50
 Identities = 82/458 (17%), Positives = 150/458 (32%), Gaps = 36/458 (7%)

Query: 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLT 410
           +E   N+    +  N    P  LP     +   LD+S+N L+           P L  L 
Sbjct: 4   VEVVPNITYQCMELNFYKIPDNLPF----STKNLDLSFNPLRHLGSYSFFS-FPELQVLD 58

Query: 411 ISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLF 470
           +S          ++  ++ L  L L+ N +        + G  +L+ L+    +L     
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLEN 117

Query: 471 SKKINLTKLKRLNLDGNHFIGG-IPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDA 529
               +L  LK LN+  N      +PE  SN ++L+ L +S N I     T +  +  +  
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 530 IIMP----DNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNR 585
           + +      N +    P  F ++  L  L L  N  +   +       + L    L    
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 586 LNGN------IPNWMGRLSQLRYLILA---NNNFEGEVPLRLCQLQKLRLLDLSHNNFSG 636
                       + +  L  L          + +  ++      L  +    L       
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE- 295

Query: 637 QIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQP 696
           ++     N        + +L      ++         S+   + + FT+ +    +    
Sbjct: 296 RVKDFSYNFGWQ----HLEL---VNCKFGQFPTLKLKSL---KRLTFTSNKGGNAFSEVD 345

Query: 697 LESIHGLDLSCNKL--IGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLS 754
           L S+  LDLS N L   G           +  L+LS N +  T+   F  L Q+E LD  
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 404

Query: 755 YNNLTGKIPPR-LVELNALAVFTVAHNNLSGKIPERIA 791
           ++NL         + L  L    ++H +          
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  186 bits (474), Expect = 3e-50
 Identities = 96/595 (16%), Positives = 174/595 (29%), Gaps = 119/595 (20%)

Query: 43  SLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSS 102
                 + L+ L+++ N I      E     S L+NL+ LDLS N   +   + L  L  
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEY---FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 103 LKN----LSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDL 158
           +      L L+ N +              L  L + +N     V+    +GL  L    L
Sbjct: 175 MPLLNLSLDLSLNPMNFI--QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 159 SGLRIRDGSKVLH-SIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIG 217
                R+   +      +   L  L ++    A                      + ++ 
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY--------------------LDYYLD 272

Query: 218 SLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYS 277
            +      LT++    +    +      S       +EL+      F          +  
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF----PTLKLKSLK 328

Query: 278 KLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVII 337
           +L     +    F E++           L  + LS +G S  G                 
Sbjct: 329 RLTFTSNKGGNAFSEVDLPS--------LEFLDLSRNGLSFKGCCS-------------- 366

Query: 338 SDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPV 397
                            T+L+ + L+ N +           + +  LD  ++ L+     
Sbjct: 367 -----------QSDFGTTSLKYLDLSFNGVITMSSNFLGL-EQLEHLDFQHSNLKQMSEF 414

Query: 398 EIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY 457
            +   L NL +L IS      +    F  ++SL  L ++ N         +     NL +
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 458 LLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSI 517
           L LS   L+                           P + ++ SSLQ L +S N+     
Sbjct: 475 LDLSQCQLEQL------------------------SPTAFNSLSSLQVLNMSHNNFFSLD 510

Query: 518 PTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLL 577
                                      +  L+ L++LD S N+I            S L 
Sbjct: 511 TFP------------------------YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 546

Query: 578 TLDLCNNRLNGNIPN-WMGR-LSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLS 630
            L+L  N       +    + +   R L++     E   P    Q   +  L+++
Sbjct: 547 FLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK-QGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  172 bits (438), Expect = 1e-45
 Identities = 90/563 (15%), Positives = 159/563 (28%), Gaps = 94/563 (16%)

Query: 250 HLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSI 309
            + +I    +  N ++IP +L         K      N +      S  S     +L  +
Sbjct: 6   VVPNITYQCMELNFYKIPDNLPF-----STKNLDLSFNPLRHLGSYSFFSFP---ELQVL 57

Query: 310 SLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSG 369
            LS                  HL  +I++   ++           ++L+ ++    +L+ 
Sbjct: 58  DLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLAS 114

Query: 370 PFRLPTRSRKNIIALDISYNKLQG-HIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMN 428
               P    K +  L++++N +Q   +P      L NL  L +S N       +    ++
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 429 SL----IYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKI-NLTKLKRLN 483
            +    + LDLS N +    P         L  L L NN     +    I  L  L+   
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 484 LDGNHFIGGI---PESLSNCSSLQGLYISDNDIS------GSIPTWMGNISFLDAIIMPD 534
           L    F           S    L  L I +  ++        I      ++ + +  +  
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 535 NHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWM 594
             +E      +      + L+L        P      K   L  L   +N+         
Sbjct: 292 VTIERVKDFSYNFG--WQHLELVNCKFGQFP----TLKLKSLKRLTFTSNKGGNAFSEV- 344

Query: 595 GRLSQLRYLILANN--NFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEG 652
             L  L +L L+ N  +F+G           L+ LDLS N         L    L     
Sbjct: 345 -DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH--- 400

Query: 653 YYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIG 712
                                                             LD   + L  
Sbjct: 401 --------------------------------------------------LDFQHSNLKQ 410

Query: 713 EIPSRI-GELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPR-LVELN 770
                +   L  +  L++S  +        F+ L  +E L ++ N+      P    EL 
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 771 ALAVFTVAHNNLSGKIPERIAQF 793
            L    ++   L    P      
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSL 493

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  166 bits (423), Expect = 1e-43
 Identities = 96/561 (17%), Positives = 165/561 (29%), Gaps = 125/561 (22%)

Query: 242 NLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLT 301
           N    P     S + L LS N  +  +    FF++ +L++      +I    + ++ SL+
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76

Query: 302 PKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSII 361
                                        HL  +I++   ++           ++L+ ++
Sbjct: 77  -----------------------------HLSTLILTGNPIQSLALGA-FSGLSSLQKLV 106

Query: 362 LANNSLSGPFRLPTRSRKNIIALDISYNKLQG-HIPVEIGKVLPNLGFLTISFNAFNGSI 420
               +L+     P    K +  L++++N +Q   +P      L NL  L +S N      
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIY 165

Query: 421 PSSFGDMNSL----IYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKI-N 475
            +    ++ +    + LDLS N +    P         L  L L NN     +    I  
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQG 223

Query: 476 LTKLKRLNLDGNHFIGGI---PESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIM 532
           L  L+   L    F           S    L  L I +  ++                  
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL---------------- 267

Query: 533 PDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPN 592
             ++    I   F  L  +    L    I        FS       L+L N +       
Sbjct: 268 --DYYLDDIIDLFNCLTNVSSFSLVSVTIERVK---DFSYNFGWQHLELVNCKFGQFPTL 322

Query: 593 WMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHN--NFSGQIPPCLDNTSLHRE 650
            +  L +L +      N           L  L  LDLS N  +F G              
Sbjct: 323 KLKSLKRLTFTSNKGGN-----AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG------ 371

Query: 651 EGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKL 710
                                                           S+  LDLS N +
Sbjct: 372 ----------------------------------------------TTSLKYLDLSFNGV 385

Query: 711 IGEIPSRIGELIRIHTLNLSRNNLTGTIPV-TFSNLRQVESLDLSYNNLTGKIPPRLVEL 769
           I  + S    L ++  L+   +NL        F +LR +  LD+S+ +           L
Sbjct: 386 IT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 770 NALAVFTVAHNNLSGKIPERI 790
           ++L V  +A N+        I
Sbjct: 445 SSLEVLKMAGNSFQENFLPDI 465

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  234 bits (600), Expect = 5e-67
 Identities = 96/677 (14%), Positives = 188/677 (27%), Gaps = 142/677 (20%)

Query: 121 ELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSG--LRIRDGSKVLHSIGSFPS 178
            L+S   + GL +         VP     L +L  L L     ++ +       I +  S
Sbjct: 76  SLNSNGRVTGLSLEGFGASG-RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 179 LKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQ 238
            +       ++ KT        + + L +  I+ +    S+            +    N 
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 239 LTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHS 298
           +T  +S + +M LT +    + N+                 +  +    Q +   +    
Sbjct: 195 ITF-VSKA-VMRLTKLRQFYMGNS------PFVAENICEAWENENSEYAQQYKTEDLKWD 246

Query: 299 SLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLR 358
           +L     LT + + +  +     +P FL                              ++
Sbjct: 247 NLK---DLTDVEVYNCPNL--TKLPTFLK-------------------------ALPEMQ 276

Query: 359 SIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAF-N 417
            I +A N      +L                        +       +  + I +N    
Sbjct: 277 LINVACNRGISGEQLK----------------DDWQALADAPV-GEKIQIIYIGYNNLKT 319

Query: 418 GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLT 477
             + +S   M  L  L+   NQL G++P         L  L L+ N +     +      
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKLPA-FG-SEIKLASLNLAYNQITEIPANFCGFTE 377

Query: 478 KLKRLNLDGNHFIGGIPESLS--NCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDN 535
           +++ L+   N  +  IP      + S +  +  S N+I          +           
Sbjct: 378 QVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL----------- 425

Query: 536 HLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNG------- 588
                      +   +  ++LS N I+  P    FS  S L +++L  N L         
Sbjct: 426 ------DPTPFKGINVSSINLSNNQISKFP-KELFSTGSPLSSINLMGNMLTEIPKNSLK 478

Query: 589 NIPNWMGRLSQLRYLILANNNFEG-EVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDN-TS 646
           +          L  + L  N         R   L  L  +DLS+N+FS   P    N ++
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSST 537

Query: 647 LHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLS 706
           L                                               +     +  D  
Sbjct: 538 L-----------------------------------------------KGFGIRNQRDAQ 550

Query: 707 CNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRL 766
            N+ + E P  I     +  L +  N++         N+     LD+  N         +
Sbjct: 551 GNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPNISIDLSYV 607

Query: 767 VELNALAVFTVAHNNLS 783
                  ++ + ++   
Sbjct: 608 CPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  233 bits (596), Expect = 2e-66
 Identities = 88/582 (15%), Positives = 180/582 (30%), Gaps = 81/582 (13%)

Query: 83  DLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLV 142
           +   + +      SL     +  LSL      G +  + +  L+ LE L +  +      
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVP-DAIGQLTELEVLALGSHG----- 116

Query: 143 VPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCEL 202
                              ++ +       I +  S +       ++ KT        + 
Sbjct: 117 ------------------EKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158

Query: 203 AHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNN 262
           + L +  I+ +    S+            +    N +T  +S + +M LT +    + N+
Sbjct: 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA-VMRLTKLRQFYMGNS 216

Query: 263 HFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTI 322
                            +  +    Q +   +    +L     LT + + +  +     +
Sbjct: 217 ------PFVAENICEAWENENSEYAQQYKTEDLKWDNLK---DLTDVEVYNCPNL--TKL 265

Query: 323 PKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNII 382
           P FL     ++ + ++                    S     +        P    + I 
Sbjct: 266 PTFLKALPEMQLINVA---------------CNRGISGEQLKDDWQALADAP--VGEKIQ 308

Query: 383 ALDISYNKLQ-GHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLT 441
            + I YN L+   +   + K +  LG L   +N   G +P +FG    L  L+L+ NQ+T
Sbjct: 309 IIYIGYNNLKTFPVETSLQK-MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT 366

Query: 442 GEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKI-NLTKLKRLNLDGNHF-------IGGI 493
             IP +       +E L  ++N L+         +++ +  ++   N            +
Sbjct: 367 E-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

Query: 494 PESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEG-------PIPSEFC 546
             +     ++  + +S+N IS          S L +I +  N L              F 
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485

Query: 547 QLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYL--- 603
               L  +DL  N +     +   +   YL+ +DL  N  +   P      S L+     
Sbjct: 486 NTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544

Query: 604 ---ILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCL 642
                  N    E P  +     L  L +  N+    +   +
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI 585

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  230 bits (588), Expect = 2e-65
 Identities = 75/625 (12%), Positives = 168/625 (26%), Gaps = 125/625 (20%)

Query: 201 ELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSP---LMHLTSIELL 257
               +  L ++     G +P  +  LT L VL +  +    N        +    S E  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 258 ILSNNHFQIPM-SLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGD 316
                H+Q      +P  ++S L       +     I+ S        + T I       
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL---KDTQIGQLS--- 192

Query: 317 SDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTR 376
                                   N        ++   T LR   + N+           
Sbjct: 193 ------------------------NNITFVSKAVM-RLTKLRQFYMGNSPFVAENIC--- 224

Query: 377 SRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLS 436
             +     +  Y +      ++    L +L  + +        +P+    +  +  ++++
Sbjct: 225 --EAWENENSEYAQQYKTEDLKWDN-LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281

Query: 437 NNQLTGEIPEHLAMG-------CFNLEYLLLSNNSLQ-GQLFSKKINLTKLKRLNLDGNH 488
            N+                      ++ + +  N+L+   + +    + KL  L    N 
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341

Query: 489 FIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEG-PIPSEFCQ 547
             G    +  +   L  L ++ N I+     + G    ++ +    N L+  P   +   
Sbjct: 342 LEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS 400

Query: 548 LDYLEILDLSKNNIAGRPLNG------AFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLR 601
           +  +  +D S N I                K   + +++L NN+++          S L 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 602 YLILANNNFEG-------EVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYY 654
            + L  N           +          L  +DL  N  +  +      T+L       
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTL------- 512

Query: 655 DLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEI 714
                                                        + G+DLS N    + 
Sbjct: 513 -------------------------------------------PYLVGIDLSYNSF-SKF 528

Query: 715 PSRIGELIRI------HTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVE 768
           P++      +      +  +   N      P   +    +  L +  N++   +  ++  
Sbjct: 529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI-- 585

Query: 769 LNALAVFTVAHNNLSGKIPERIAQF 793
              ++V  +  N         +  +
Sbjct: 586 TPNISVLDIKDNPNISIDLSYVCPY 610

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  223 bits (570), Expect = 8e-63
 Identities = 97/635 (15%), Positives = 187/635 (29%), Gaps = 108/635 (17%)

Query: 7   SDCCQWQS---VLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAG 63
            +   W +   V  N+   RV  + L     +  +       T   +LE L L  +    
Sbjct: 64  KELDMWGAQPGVSLNSNG-RVTGLSLEGFGASGRVPDAIGQLT---ELEVLALGSHGEKV 119

Query: 64  CVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGL--SSLKNLSLAYNRLEGSINIEE 121
                G + +S   + +        +  + +        S L    +  +  + SI    
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

Query: 122 LDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKT 181
             +L + + +    N I  +   K    L KLR   +              +        
Sbjct: 180 RITLKDTQ-IGQLSNNITFV--SKAVMRLTKLRQFYMGNSPF---------VAENICEAW 227

Query: 182 LYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTE 241
               S    +  T       L  L ++ + +   +  LP  L  L  +++++V  N+   
Sbjct: 228 ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

Query: 242 NLSS-------SPLMHLTSIELLILSNNHFQ---IPMSLEPFFNYSKLKIFHGRENQIFG 291
                      +       I+++ +  N+ +   +  S        KL +     NQ+ G
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS---LQKMKKLGMLECLYNQLEG 344

Query: 292 EIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLL 351
           ++  +  S     +L S++L+                            N   E P+   
Sbjct: 345 KLP-AFGSEI---KLASLNLAY---------------------------NQITEIPANFC 373

Query: 352 ENNTNLRSIILANNSLSG-PFRLPTRSRKNIIALDISYNKLQG-------HIPVEIGKVL 403
                + ++  A+N L   P     +S   + A+D SYN++          +     K  
Sbjct: 374 GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK-G 432

Query: 404 PNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAM------GCFNLEY 457
            N+  + +S N  +      F   + L  ++L  N LT      L          + L  
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492

Query: 458 LLLSNNSLQGQLFSKKI---NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDIS 514
           + L  N L     S       L  L  ++L  N F    P    N S+L+G  I +    
Sbjct: 493 IDLRFNKLTK--LSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQ--- 546

Query: 515 GSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCS 574
                               N      P        L  L +  N+I             
Sbjct: 547 ---------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE----KITP 587

Query: 575 YLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNN 609
            +  LD+ +N       +++    +    +L  + 
Sbjct: 588 NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  174 bits (444), Expect = 5e-46
 Identities = 54/387 (13%), Positives = 110/387 (28%), Gaps = 63/387 (16%)

Query: 412 SFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQ--- 468
             + +      S      +  L L     +G +P+ +      LE L L ++  +     
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVNERL 123

Query: 469 -LFSKKINLTKLKRLNLDGNHFIGGIPESLS--NCSSLQGLYISDNDISGSIPTWMGNIS 525
                       ++      H+     +     + S L    I+ +    SI        
Sbjct: 124 FGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183

Query: 526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNR 585
               I    N++   +     +L  L    +  +      +      C      +    +
Sbjct: 184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQ 236

Query: 586 LNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNT 645
                      L  L  + + N     ++P  L  L +++L++++ N          D  
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296

Query: 646 SLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDL 705
           +L                                                  E I  + +
Sbjct: 297 AL-------------------------ADAPV-------------------GEKIQIIYI 312

Query: 706 SCNKLI-GEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPP 764
             N L    + + + ++ ++  L    N L G +P  F +  ++ SL+L+YN +T  IP 
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPA 370

Query: 765 RLVE-LNALAVFTVAHNNLSGKIPERI 790
                   +   + AHN L   IP   
Sbjct: 371 NFCGFTEQVENLSFAHNKLKY-IPNIF 396

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  106 bits (266), Expect = 8e-24
 Identities = 26/294 (8%), Positives = 72/294 (24%), Gaps = 50/294 (17%)

Query: 514 SGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLN---GAF 570
                  + +   +  + +      G +P    QL  LE+L L  +              
Sbjct: 70  GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI 129

Query: 571 SKCSYLLTLDLCNNRLNGNIPNWMGRL--SQLRYLILANNNFEGEVPLRLCQLQKLRLLD 628
           S                    ++  R   S L    + ++  +  +        K   + 
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189

Query: 629 LSHNNFSGQIPPCLDN-TSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKE 687
              NN +  +   +   T L                   +  +            F  + 
Sbjct: 190 QLSNNITF-VSKAVMRLTKL---------------RQFYMGNS-----------PFVAEN 222

Query: 688 RSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQ 747
                     E+    +    +       +   L  +  + +        +P     L +
Sbjct: 223 --------ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274

Query: 748 VESLDLSYNNLT--------GKIPPRLVELNALAVFTVAHNNL-SGKIPERIAQ 792
           ++ ++++ N            +          + +  + +NNL +  +   + +
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 87.0 bits (216), Expect = 9e-18
 Identities = 38/212 (17%), Positives = 68/212 (32%), Gaps = 22/212 (10%)

Query: 48  FQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFN-------NSVLSSLAGL 100
              + S++LS N I+   +       S  S L  ++L  N               +    
Sbjct: 432 GINVSSINLSNNQISKFPKEL----FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 101 SSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSG 160
             L ++ L +N+L    +     +L  L G+D+S N       P        L+   +  
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF--PTQPLNSSTLKGFGIRN 545

Query: 161 LRIRDGSKVLH----SIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFI 216
            R   G++ L      I   PSL  L + SN+  K            ++  L I  N  I
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI-----TPNISVLDIKDNPNI 600

Query: 217 GSLPWCLANLTSLRVLHVPDNQLTENLSSSPL 248
                 +       +  +  ++  +      L
Sbjct: 601 SIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 13/114 (11%), Positives = 31/114 (27%), Gaps = 6/114 (5%)

Query: 704 DLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG--- 760
           +   +    +    +    R+  L+L     +G +P     L ++E L L  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 761 -KIPPRLVELNALAVFTVAHNNLSGKIPERIA--QFATFDEDSYEGNPFLCGPP 811
              P  +    +         +      +      F+   +D    +P      
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 10/65 (15%), Positives = 22/65 (33%)

Query: 726 TLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGK 785
             N   +       V+ ++  +V  L L     +G++P  + +L  L V  +  +     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 786 IPERI 790
                
Sbjct: 121 ERLFG 125

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  227 bits (580), Expect = 2e-64
 Identities = 108/592 (18%), Positives = 187/592 (31%), Gaps = 71/592 (11%)

Query: 51  LESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAY 110
            E L+ S N +            S L NL FLDL+          +      L  L L  
Sbjct: 35  TECLEFSFNVLPTIQNTT----FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 111 NRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVL 170
           N L   +    L     L+ L      I ++         + L  L L    I      L
Sbjct: 91  NPLI-FMAETALSGPKALKHLFFIQTGISSI-DFIPLHNQKTLESLYLGSNHISSIK--L 146

Query: 171 HSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHND-FIGSLPWCLANLTSL 229
                   LK L  ++N       + + +  L     L ++ N   I  +     +    
Sbjct: 147 PKGFPTEKLKVLDFQNNAI--HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204

Query: 230 RVLHVPDNQLT-ENLSSSPLMHLTSIELLILSNNHF-QIPMSLEPFFNYSKLKIFHGREN 287
           + L+    Q             + S+ L    +     I  ++        ++  + +++
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

Query: 288 QIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFP 347
             F    ++    +    L  + L+                                E P
Sbjct: 265 YFFNISSNTFHCFS---GLQELDLTA---------------------------THLSELP 294

Query: 348 SWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLG 407
           S  L   + L+ ++L+ N      ++   +  ++  L I  N  +  +     + L NL 
Sbjct: 295 SG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353

Query: 408 FLTISFNAFNGS--IPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSL 465
            L +S +    S        +++ L  L+LS N+      E     C  LE L L+   L
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRL 412

Query: 466 QG-QLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNI 524
           +     S   NL  LK LNL  +       +      +LQ L +  N             
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI------ 466

Query: 525 SFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNN 584
                             +    L  LEIL LS  +++      AF+    +  +DL +N
Sbjct: 467 ---------------QKTNSLQTLGRLEILVLSFCDLSSID-QHAFTSLKMMNHVDLSHN 510

Query: 585 RLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSG 636
           RL  +    +  L  + YL LA+N+    +P  L  L + R ++L  N    
Sbjct: 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  216 bits (553), Expect = 7e-61
 Identities = 103/574 (17%), Positives = 193/574 (33%), Gaps = 48/574 (8%)

Query: 80  KFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEID 139
           K  +  +   N  +  +L   +S + L  ++N L  +I       L NL  LD++  +I 
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIY 70

Query: 140 NLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGL 199
            +     ++   +L  L L+   +   ++   ++    +LK L+      +        L
Sbjct: 71  WIH-EDTFQSQHRLDTLVLTANPLIFMAE--TALSGPKALKHLFFIQTGISSIDFIP--L 125

Query: 200 CELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLIL 259
                L+ LY+  N               L+VL   +N +   LS   +  L     L L
Sbjct: 126 HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSL 184

Query: 260 SNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDG 319
           + N   I       F+ +  +  +    Q    I     + T +  L   +  D      
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ-SLWLGTFED------ 237

Query: 320 GTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLEN--NTNLRSIILANNSLSGPFRLPTRS 377
                                    +    + E     ++ SI L  +            
Sbjct: 238 ---------------------MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276

Query: 378 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSN 437
              +  LD++   L   +P  +   L  L  L +S N F      S  +  SL +L +  
Sbjct: 277 FSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334

Query: 438 NQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKI--NLTKLKRLNLDGNHFIGGIPE 495
           N    E+         NL  L LS++ ++          NL+ L+ LNL  N  +    E
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394

Query: 496 SLSNCSSLQGLYISDNDISGSIP-TWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEIL 554
           +   C  L+ L ++   +      +   N+  L  + +  + L+      F  L  L+ L
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454

Query: 555 DLSKNNIAGRPL--NGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEG 612
           +L  N+     +    +      L  L L    L+    +    L  + ++ L++N    
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514

Query: 613 EVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTS 646
                L  L+ +  L+L+ N+ S  +P  L   S
Sbjct: 515 SSIEALSHLKGIY-LNLASNHISIILPSLLPILS 547

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  214 bits (547), Expect = 6e-60
 Identities = 107/617 (17%), Positives = 198/617 (32%), Gaps = 99/617 (16%)

Query: 153 LRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDH 212
              L+ S   +        +     +L  L L                    L  L +  
Sbjct: 35  TECLEFSFNVLPTIQN--TTFSRLINLTFLDLTRCQI--YWIHEDTFQSQHRLDTLVLTA 90

Query: 213 NDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEP 272
           N  I      L+   +L+ L      ++  +   PL +  ++E L L +NH    + L  
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISS-IKLPK 148

Query: 273 FFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHL 332
            F   KLK+   + N I    +   SSL    Q T++SL +   +D   I    +     
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQ---QATNLSL-NLNGNDIAGIEPGAFDSAVF 204

Query: 333 EFVIISDVNMRGEFPSWLLENN-TNLRSIILANNSLSGPFRLPTR--SRKNIIALDISYN 389
           + +              L  +   +L      +                 ++ ++++  +
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

Query: 390 KLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLA 449
                I          L  L ++    +  +PS    +++L  L LS N+    + +  A
Sbjct: 265 YFFN-ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN-LCQISA 321

Query: 450 MGCFNLEYLLLSNNSLQGQLFSKKI-NLTKLKRLNLDGNH--FIGGIPESLSNCSSLQGL 506
               +L +L +  N+ + +L +  + NL  L+ L+L  +           L N S LQ L
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381

Query: 507 YISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPL 566
            +S N+                                F +   LE+LDL+   +  +  
Sbjct: 382 NLSYNEPLSLKTEA------------------------FKECPQLELLDLAFTRLKVKDA 417

Query: 567 NGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLR---LCQLQK 623
              F     L  L+L ++ L+ +       L  L++L L  N+F      +   L  L +
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477

Query: 624 LRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDF 683
           L +L LS  + S        +                                       
Sbjct: 478 LEILVLSFCDLSSIDQHAFTS--------------------------------------- 498

Query: 684 TTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFS 743
                        L+ ++ +DLS N+L       +  L  I  LNL+ N+++  +P    
Sbjct: 499 -------------LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP 544

Query: 744 NLRQVESLDLSYNNLTG 760
            L Q  +++L  N L  
Sbjct: 545 ILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  197 bits (502), Expect = 6e-54
 Identities = 97/620 (15%), Positives = 176/620 (28%), Gaps = 99/620 (15%)

Query: 204 HLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNH 263
             + L    N          + L +L  L +   Q+   +          ++ L+L+ N 
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANP 92

Query: 264 FQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIP 323
               M+         LK     +  I         +      L S+ L            
Sbjct: 93  LIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQK---TLESLYLGS---------- 138

Query: 324 KFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSG--PFRLPTRSRKNI 381
                            N               L+ +   NN++       + +  +   
Sbjct: 139 -----------------NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181

Query: 382 IALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPS--SFGDMNSLIYLDLSNNQ 439
           ++L+++ N +   I             L          I        + SL      +  
Sbjct: 182 LSLNLNGNDIA-GIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239

Query: 440 LTGEIPEHLAMGCF-NLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLS 498
                P      C  ++E + L  +       +     + L+ L+L   H +  +P  L 
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLV 298

Query: 499 NCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSE-FCQLDYLEILDLS 557
             S+L+ L +S N           N   L  + +  N     + +     L+ L  LDLS
Sbjct: 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358

Query: 558 KNNIAGRPL-NGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPL 616
            ++I      N      S+L +L+L  N              QL  L LA    + +   
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418

Query: 617 R-LCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSM 675
                L  L++L+LSH+          D                                
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDISSEQLFDG------------------------------- 447

Query: 676 GEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIG---ELIRIHTLNLSRN 732
                                L ++  L+L  N        +      L R+  L LS  
Sbjct: 448 ---------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486

Query: 733 NLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQ 792
           +L+      F++L+ +  +DLS+N LT      L  L  +    +A N++S  +P  +  
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPI 545

Query: 793 FATFDEDSYEGNPFLCGPPL 812
            +     +   NP  C    
Sbjct: 546 LSQQRTINLRQNPLDCTCSN 565

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  194 bits (496), Expect = 4e-53
 Identities = 105/599 (17%), Positives = 192/599 (32%), Gaps = 99/599 (16%)

Query: 43  SLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSS 102
           +  +  + L+ L      I+          L     L+ L L  N  ++  L        
Sbjct: 99  TALSGPKALKHLFFIQTGISSIDFIP----LHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 103 LKNLSLAYNRLEGSINIEELDSLSNLEG--LDMSDNEIDNLVVPKDYRGLRKLRFLDLSG 160
           LK L    N +   ++ E++ SL       L+++ N+I  +            + L+  G
Sbjct: 155 LKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGI--EPGAFDSAVFQSLNFGG 211

Query: 161 LRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP 220
            +            +  SL     +  +                ++ + +  + F     
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271

Query: 221 WCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLK 280
                 + L+ L +    L+E  S   L+ L++++ L+LS N F+               
Sbjct: 272 NTFHCFSGLQELDLTATHLSELPSG--LVGLSTLKKLVLSANKFE--------------- 314

Query: 281 IFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDV 340
                        + S S+      LT +S+  +                          
Sbjct: 315 ----------NLCQISASNFP---SLTHLSIKGN-------------------------- 335

Query: 341 NMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIG 400
             R E  +  LEN  NLR + L+++ +                 D    +L+        
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIET--------------SDCCNLQLRN------- 374

Query: 401 KVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLL 460
             L +L  L +S+N        +F +   L  LDL+  +L  +  +        L+ L L
Sbjct: 375 --LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

Query: 461 SNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGI---PESLSNCSSLQGLYISDNDISGSI 517
           S++ L          L  L+ LNL GNHF  G      SL     L+ L +S  D+S   
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492

Query: 518 PTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLL 577
                ++  ++ + +  N L          L  +  L+L+ N+I+    +      S   
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS-LLPILSQQR 550

Query: 578 TLDLCNNRLNGNIPN-WMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635
           T++L  N L+    N +      L +        E            LR + LS    S
Sbjct: 551 TINLRQNPLDCTCSNIYF-----LEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  160 bits (408), Expect = 1e-41
 Identities = 78/444 (17%), Positives = 140/444 (31%), Gaps = 43/444 (9%)

Query: 355 TNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFN 414
            +   +  + N L            N+  LD++  ++   I  +  +    L  L ++ N
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTAN 91

Query: 415 AFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKI 474
                  ++     +L +L      ++      L      LE L L +N +      K  
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH-NQKTLESLYLGSNHISSIKLPKGF 150

Query: 475 NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYI--SDNDISGSIPTWMGNISFLDAIIM 532
              KLK L+   N       E +S+      L +  + NDI+  I     + +   ++  
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNF 209

Query: 533 PDNHLEGPIPSE--FCQLDYLEILDLSKNNIAGRPLNGAFSKCS--YLLTLDLCNNRLNG 588
                   I        +  L +      +         F       + +++L  +    
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE-DISPAVFEGLCEMSVESINLQKHYFFN 268

Query: 589 NIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDN-TSL 647
              N     S L+ L L   +   E+P  L  L  L+ L LS N F         N  SL
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 648 HREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSC 707
                +  +             N          +             + LE++  LDLS 
Sbjct: 328 T----HLSI-----------KGNTKRLELGTGCL-------------ENLENLRELDLSH 359

Query: 708 NKL--IGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPR 765
           + +        ++  L  + +LNLS N         F    Q+E LDL++  L  K    
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

Query: 766 -LVELNALAVFTVAHNNLSGKIPE 788
               L+ L V  ++H+ L     +
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQ 443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  157 bits (398), Expect = 2e-40
 Identities = 66/357 (18%), Positives = 114/357 (31%), Gaps = 14/357 (3%)

Query: 433 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGG 492
            +  N  L  EIP  L     + E L  S N L     +    L  L  L+L        
Sbjct: 17  YNCENLGLN-EIPGTLPN---STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 493 IPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE 552
             ++  +   L  L ++ N +     T +     L  +      +             LE
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 553 ILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILA-NNNFE 611
            L L  N+I+   L         L  LD  NN ++      M  L Q   L L  N N  
Sbjct: 133 SLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 612 GEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHR-EEGYYDLIPTYRNEYDIVSYN 670
             +          + L+         I   L N+++     G ++ +        +    
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 671 VGPSMGEKETIDFTTKERSYTYKG--QPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLN 728
              S+   E+I+                   +  LDL+    + E+PS +  L  +  L 
Sbjct: 252 CEMSV---ESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLV 307

Query: 729 LSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVE-LNALAVFTVAHNNLSG 784
           LS N       ++ SN   +  L +  N    ++    +E L  L    ++H+++  
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  141 bits (357), Expect = 4e-35
 Identities = 96/504 (19%), Positives = 175/504 (34%), Gaps = 94/504 (18%)

Query: 39  YLNFSLFTPFQQLE--SLDLSGNNI----AGCVENEGLEKL-----------------SG 75
           YL+    +  QQ    SL+L+GN+I     G  ++   + L                 S 
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226

Query: 76  LSNLKFLDLSHNSFNNSVLSSLAGLS--SLKNLSLAYNRLEGSINIEELDSLSNLEGLDM 133
           + +L           +   +   GL   S+++++L  +    +I+       S L+ LD+
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDL 285

Query: 134 SDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTV 193
           +   +  L  P    GL  L+ L LS  +  +  +   S  +FPSL  L +K N   +  
Sbjct: 286 TATHLSEL--PSGLVGLSTLKKLVLSANKFENLCQ--ISASNFPSLTHLSIKGNTK-RLE 340

Query: 194 TTTQGLCELAHLQELYIDHND--FIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHL 251
             T  L  L +L+EL + H+D          L NL+ L+ L++  N+   +L +      
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKEC 399

Query: 252 TSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISL 311
             +ELL L+    ++  +  PF N   LK+ +   + +    E     L     L  ++L
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP---ALQHLNL 456

Query: 312 SDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPF 371
                                                     N   +  I   NSL    
Sbjct: 457 Q----------------------------------------GNHFPKGNIQKTNSLQTL- 475

Query: 372 RLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLI 431
                    +  L +S+  L   I       L  +  + +S N    S   +   +  + 
Sbjct: 476 -------GRLEILVLSFCDLS-SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI- 526

Query: 432 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIG 491
           YL+L++N ++  +P  L         + L  N L         +         +    + 
Sbjct: 527 YLNLASNHISIILPSLLP-ILSQQRTINLRQNPLDC-----TCSNIYFLEWYKENMQKLE 580

Query: 492 GIPESL-SNCSSLQGLYISDNDIS 514
              ++L  N   L+G+ +SD  +S
Sbjct: 581 DTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  132 bits (334), Expect = 3e-32
 Identities = 68/413 (16%), Positives = 137/413 (33%), Gaps = 60/413 (14%)

Query: 30  LSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSF 89
                   +       +  Q L        +      +  + +     +++ ++L  + F
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED--ISPAVFEGLCEMSVESINLQKHYF 266

Query: 90  NNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRG 149
            N   ++    S L+ L L    L   +    L  LS L+ L +S N+ +NL        
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLS-ELP-SGLVGLSTLKKLVLSANKFENL-CQISASN 323

Query: 150 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELY 209
              L  L + G   R        + +  +L+ L L  ++   +      L  L+HLQ L 
Sbjct: 324 FPSLTHLSIKGNTKR-LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382

Query: 210 IDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMS 269
           + +N+ +            L +L +   +L    + SP  +L  +++L LS++   I  S
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SS 441

Query: 270 LEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQ 329
            + F     L+  + + N          +S                              
Sbjct: 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNS------------------------------ 471

Query: 330 HHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYN 389
                                L+    L  ++L+   LS   +    S K +  +D+S+N
Sbjct: 472 ---------------------LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510

Query: 390 KLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTG 442
           +L     +E    L  + +L ++ N  +  +PS    ++    ++L  N L  
Sbjct: 511 RLT-SSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.4 bits (186), Expect = 4e-14
 Identities = 28/261 (10%), Positives = 56/261 (21%), Gaps = 57/261 (21%)

Query: 552 EILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE 611
           +  +     +   P        +    L+   N L         RL  L +L L      
Sbjct: 15  KTYNCENLGLNEIPGTLP----NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 612 GEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNV 671
                      +L  L L+ N         L                             
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSG--------------------------- 103

Query: 672 GPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSR 731
                                     +++  L      +       +     + +L L  
Sbjct: 104 -------------------------PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138

Query: 732 NNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA-HNNLSGKIPERI 790
           N+++           +++ LD   N +       +  L      ++  + N    I    
Sbjct: 139 NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198

Query: 791 AQFATFDEDSYEGNPFLCGPP 811
              A F   ++ G   L    
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIF 219

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  217 bits (556), Expect = 3e-64
 Identities = 79/335 (23%), Positives = 129/335 (38%), Gaps = 52/335 (15%)

Query: 493 IPESLSNCSSLQ----GLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEG--PIPSEFC 546
           I + L N ++L          +    G +         ++ + +   +L    PIPS   
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 547 QLDYLEILDLSK-NNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLIL 605
            L YL  L +   NN+ G P+  A +K + L  L + +  ++G IP+++ ++  L  L  
Sbjct: 74  NLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 606 ANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDN-TSLHREEGYYDLIPTYRNEY 664
           + N   G +P  +  L  L  +    N  SG IP    + + L        +        
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT---SMTI-------- 181

Query: 665 DIVSYN--VGPSMGEKETIDFTTKERSYTYKGQPLE----SIHGLDLSCNKLIGEIPSRI 718
              S N   G        I              P      ++  +DLS N L G+     
Sbjct: 182 ---SRNRLTGK-------I--------------PPTFANLNLAFVDLSRNMLEGDASVLF 217

Query: 719 GELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA 778
           G       ++L++N+L   +       + +  LDL  N + G +P  L +L  L    V+
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 779 HNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLP 813
            NNL G+IP+       FD  +Y  N  LCG PLP
Sbjct: 277 FNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  196 bits (500), Expect = 2e-56
 Identities = 79/355 (22%), Positives = 139/355 (39%), Gaps = 66/355 (18%)

Query: 419 SIPSSFGDMNSL----IYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQL-FSKK 473
            I    G+  +L       D  N    G + +      + +  L LS  +L         
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSS 71

Query: 474 I-NLTKLKRLNL-DGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAII 531
           + NL  L  L +   N+ +G IP +++  + L  LYI+  ++SG+IP ++  I  L  + 
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 532 MPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLT-LDLCNNRLNGNI 590
              N L G +P     L  L  +    N I+G  +  ++   S L T + +  NRL G I
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISG-AIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 591 PNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHRE 650
           P     L+ L ++ L+ N  EG+  +     +  + + L+ N+ +  +            
Sbjct: 191 PPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL------------ 237

Query: 651 EGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKL 710
                                   +G                     ++++GLDL  N++
Sbjct: 238 ----------------------GKVGL-------------------SKNLNGLDLRNNRI 256

Query: 711 IGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNN-LTGKIPP 764
            G +P  + +L  +H+LN+S NNL G IP    NL++ +    + N  L G   P
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  190 bits (485), Expect = 2e-54
 Identities = 83/380 (21%), Positives = 126/380 (33%), Gaps = 110/380 (28%)

Query: 364 NNSLSGPFRLPTRSRKNIIALDISYNKLQG--HIPVEIGKVLPNLGFLTIS-FNAFNGSI 420
           N +  G           +  LD+S   L     IP  +   LP L FL I   N   G I
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPI 93

Query: 421 PSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLK 480
           P +   +  L YL +++  ++G IP+ L+                          +  L 
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLS-------------------------QIKTLV 128

Query: 481 RLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLD-AIIMPDNHLEG 539
            L+   N   G +P S+S+  +L G+    N ISG+IP   G+ S L  ++ +  N L G
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188

Query: 540 PIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQ 599
            IP  F  L+                          L  +DL  N L G+     G    
Sbjct: 189 KIPPTFANLN--------------------------LAFVDLSRNMLEGDASVLFGSDKN 222

Query: 600 LRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPT 659
            + + LA N+   ++  ++   + L  LDL +N   G +P  L                 
Sbjct: 223 TQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ--------------- 266

Query: 660 YRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIG 719
                                                L+ +H L++S N L GEIP   G
Sbjct: 267 -------------------------------------LKFLHSLNVSFNNLCGEIPQ-GG 288

Query: 720 ELIRIHTLNLSRNNLTGTIP 739
            L R      + N      P
Sbjct: 289 NLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  181 bits (463), Expect = 2e-51
 Identities = 67/332 (20%), Positives = 124/332 (37%), Gaps = 69/332 (20%)

Query: 320 GTIPKFLYHQHHLEFVIISDVNMRGEFP-SWLLENNTNLRSIILAN-NSLSGPF-----R 372
           G +       + +  + +S +N+   +P    L N   L  + +   N+L GP      +
Sbjct: 40  GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99

Query: 373 LPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIY 432
           L       +  L I++  + G IP  + + +  L  L  S+NA +G++P S   + +L+ 
Sbjct: 100 L-----TQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 433 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKR-LNLDGNHFIG 491
           +    N+++G IP+                            + +KL   + +  N   G
Sbjct: 154 ITFDGNRISGAIPDSYG-------------------------SFSKLFTSMTISRNRLTG 188

Query: 492 GIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYL 551
            IP + +N  +L  + +S N + G      G+      I +  N L   +          
Sbjct: 189 KIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-------- 239

Query: 552 EILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE 611
                                   L  LDL NNR+ G +P  + +L  L  L ++ NN  
Sbjct: 240 ------------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 612 GEVPLRLCQLQKLRLLDLSHNNF--SGQIPPC 641
           GE+P +   LQ+  +   ++N       +P C
Sbjct: 282 GEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  149 bits (380), Expect = 3e-40
 Identities = 71/343 (20%), Positives = 117/343 (34%), Gaps = 77/343 (22%)

Query: 212 HNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSP-LMHLTSIELLILSN-NHF--QIP 267
           +  ++G L         +  L +    L +       L +L  +  L +   N+    IP
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 268 MSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLY 327
            ++      ++L   +     + G I    S +     L ++  S               
Sbjct: 95  PAI---AKLTQLHYLYITHTNVSGAIPDFLSQIK---TLVTLDFS--------------- 133

Query: 328 HQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGP-----FRLPTRSRKNII 382
                                                N+LSG        LP     N++
Sbjct: 134 ------------------------------------YNALSGTLPPSISSLP-----NLV 152

Query: 383 ALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTG 442
            +    N++ G IP   G        +TIS N   G IP +F ++N L ++DLS N L G
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211

Query: 443 EIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSS 502
           +          N + + L+ NSL   L  K      L  L+L  N   G +P+ L+    
Sbjct: 212 DASVLFGS-DKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 503 LQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHL--EGPIPS 543
           L  L +S N++ G IP   GN+   D     +N      P+P+
Sbjct: 270 LHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  113 bits (285), Expect = 1e-27
 Identities = 65/299 (21%), Positives = 112/299 (37%), Gaps = 47/299 (15%)

Query: 1   WVDESYSDCCQWQSVLCNATT--SRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSG 58
           W+  +      W  VLC+  T   RV  +DL  LN+     +  SL      L  L + G
Sbjct: 27  WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGG 85

Query: 59  -NNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI 117
            NN+ G +       ++ L+ L +L ++H + + ++   L+ + +L  L  +YN L G++
Sbjct: 86  INNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 118 NIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFP 177
               + SL NL G+    N                     +SG        +  S GSF 
Sbjct: 142 -PPSISSLPNLVGITFDGNR--------------------ISG-------AIPDSYGSFS 173

Query: 178 SLKT-LYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPD 236
            L T + +  N     +  T       +L  + +  N   G       +  + + +H+  
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANL---NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 237 NQLTENLSSSPLMHLTSIELLILSNNHF--QIPMSLEPFFNYSKLKIFHGRENQIFGEI 293
           N L  +L    +    ++  L L NN     +P  L        L   +   N + GEI
Sbjct: 231 NSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLT---QLKFLHSLNVSFNNLCGEI 284

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.0 bits (149), Expect = 4e-10
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 49  QQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSL 108
           +  + + L+ N++A       L K+    NL  LDL +N    ++   L  L  L +L++
Sbjct: 221 KNTQKIHLAKNSLAF-----DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 109 AYNRLEGSINIEELDSLSNLEGLDMSDN 136
           ++N L G   I +  +L   +    ++N
Sbjct: 276 SFNNLCGE--IPQGGNLQRFDVSAYANN 301

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  216 bits (552), Expect = 1e-60
 Identities = 115/596 (19%), Positives = 207/596 (34%), Gaps = 76/596 (12%)

Query: 48  FQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLS 107
               +++DLS N +            S  S L++LDLS          +  GL  L NL 
Sbjct: 31  PSSTKNIDLSFNPLKILKSYS----FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 108 LAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGS 167
           L  N ++ S +      L++LE L   + ++ +L        L  L+ L+++   I    
Sbjct: 87  LTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLE-SFPIGQLITLKKLNVAHNFIH-SC 143

Query: 168 KVLHSIGSFPSLKTLYLKSNNFAK-TVTTTQGLCEL-AHLQELYIDHNDFIGSLPWCLAN 225
           K+     +  +L  + L  N     TV   Q L E       L +  N  I  +      
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQAFQ 202

Query: 226 LTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGR 285
              L  L +  N  + N+  + L +L  + +  L    F          +   L+IF   
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF---------KDERNLEIF--- 250

Query: 286 ENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGE 345
                       S +     +T         +D        +   ++  + ++ V+++  
Sbjct: 251 ----------EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300

Query: 346 FPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPN 405
                +  +   +S+ +    L      PT     + +L ++ NK            LP+
Sbjct: 301 ED---VPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGSISFK---KVALPS 351

Query: 406 LGFLTISFNAFNGSIPSSFGDMN--SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN 463
           L +L +S NA + S   S+ D+   SL +LDLS N     I     MG   L++L   ++
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDFQHS 409

Query: 464 SLQG----QLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPT 519
           +L+       F    +L KL  L++   +            +SL  L ++ N    +   
Sbjct: 410 TLKRVTEFSAFL---SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL- 465

Query: 520 WMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTL 579
                                  + F     L  LDLSK  +      G F     L  L
Sbjct: 466 ----------------------SNVFANTTNLTFLDLSKCQLEQIS-WGVFDTLHRLQLL 502

Query: 580 DLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635
           ++ +N L     +   +L  L  L  + N  E    +     + L   +L++N+ +
Sbjct: 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  210 bits (536), Expect = 2e-58
 Identities = 111/559 (19%), Positives = 194/559 (34%), Gaps = 58/559 (10%)

Query: 40  LNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAG 99
           L    F+ F +L+ LDLS   I   +E++      GL +L  L L+ N   +    S +G
Sbjct: 47  LKSYSFSNFSELQWLDLSRCEIET-IEDKA---WHGLHHLSNLILTGNPIQSFSPGSFSG 102

Query: 100 LSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLS 159
           L+SL+NL     +L    +   +  L  L+ L+++ N I +  +P  +  L  L  +DLS
Sbjct: 103 LTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161

Query: 160 GLRIR--DGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIG 217
              I+    + +     +     +L +  N             +   L EL +  N    
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPID---FIQDQAFQGIKLHELTLRGNFNSS 218

Query: 218 SLPW-CLANLTSLRVLHVPDNQLTEN-----LSSSPLMHLTSIELLILSNNHFQI-PMSL 270
           ++   CL NL  L V  +   +  +         S +  L  + +      +       +
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278

Query: 271 EPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQH 330
             F   + +         I          +   F+  S+S+                   
Sbjct: 279 VKFHCLANVSAMSLAGVSI-----KYLEDVPKHFKWQSLSIIR----------------- 316

Query: 331 HLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNK 390
                         +FP+  L     L+S+ L  N  S  F+    +  ++  LD+S N 
Sbjct: 317 ----------CQLKQFPTLDL---PFLKSLTLTMNKGSISFKK--VALPSLSYLDLSRNA 361

Query: 391 LQG-HIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLA 449
           L              +L  L +SFN     + ++F  +  L +LD  ++ L         
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 450 MGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPES-LSNCSSLQGLYI 508
           +    L YL +S  + +       + LT L  L + GN F      +  +N ++L  L +
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

Query: 509 SDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNG 568
           S   +          +  L  + M  N+L     S + QL  L  LD S N I       
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK-GI 539

Query: 569 AFSKCSYLLTLDLCNNRLN 587
                  L   +L NN + 
Sbjct: 540 LQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  178 bits (453), Expect = 2e-47
 Identities = 99/597 (16%), Positives = 191/597 (31%), Gaps = 86/597 (14%)

Query: 203 AHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNN 262
           +  + + +  N       +  +N + L+ L +   ++   +       L  +  LIL+ N
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGN 90

Query: 263 HFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTI 322
             Q   S   F   + L+     E ++          L     L  ++++          
Sbjct: 91  PIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLI---TLKKLNVA---------- 136

Query: 323 PKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSG----PFRLPTRSR 378
                         I    +   F      N TNL  + L+ N +        +    + 
Sbjct: 137 -----------HNFIHSCKLPAYFS-----NLTNLVHVDLSYNYIQTITVNDLQFLRENP 180

Query: 379 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPS-SFGDMNSLIYLDLSN 437
           +  ++LD+S N +   I  +  +    L  LT+  N  + +I      ++  L    L  
Sbjct: 181 QVNLSLDMSLNPID-FIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238

Query: 438 NQLTGE-----IPEHLAMGCFNL--EYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFI 490
            +   E         +  G  ++  +   L+  +       K   L  +  ++L G    
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI- 297

Query: 491 GGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDY 550
               E +      Q L I    +       +  +  L    +  N     I  +   L  
Sbjct: 298 -KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT---LTMNKGS--ISFKKVALPS 351

Query: 551 LEILDLSKNNIAGRPLNGAFS--KCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANN 608
           L  LDLS+N ++      ++S    + L  LDL  N     +      L +L++L   ++
Sbjct: 352 LSYLDLSRNALSFSG-CCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHS 409

Query: 609 NFEGEVPLR-LCQLQKLRLLDLSHNNFSGQIPPCLDN-TSLHREEGYYDLIPTYRNEYDI 666
             +          L+KL  LD+S+ N            TSL+       +          
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN----TLKM---------- 455

Query: 667 VSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHT 726
            + N                            ++  LDLS  +L          L R+  
Sbjct: 456 -AGNSFKDNTLSNVF-------------ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501

Query: 727 LNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
           LN+S NNL       ++ L  + +LD S+N +            +LA F + +N+++
Sbjct: 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  159 bits (405), Expect = 3e-41
 Identities = 72/452 (15%), Positives = 142/452 (31%), Gaps = 36/452 (7%)

Query: 354 NTNLRSIILANNSLSG-PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTIS 412
                +    +  LS  P  +P+    +   +D+S+N L+  +          L +L +S
Sbjct: 10  VVPNITYQCMDQKLSKVPDDIPS----STKNIDLSFNPLK-ILKSYSFSNFSELQWLDLS 64

Query: 413 FNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSK 472
                     ++  ++ L  L L+ N +    P   + G  +LE L+     L       
Sbjct: 65  RCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS-GLTSLENLVAVETKLASLESFP 123

Query: 473 KINLTKLKRLNLDGNHFIG-GIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAII 531
              L  LK+LN+  N      +P   SN ++L  + +S N I       +  +     + 
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 532 MP----DNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLN 587
           +      N ++      F  +  L  L L  N  +   +       + L    L      
Sbjct: 184 LSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 588 GNI------PNWMGRLSQLRYLIL--ANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIP 639
                    P+ M  L  +          N   +  ++   L  +  + L+  +    + 
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE 301

Query: 640 PCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLES 699
               +            +                 +   +++  T  + S ++K   L S
Sbjct: 302 DVPKHFKWQSLSIIRCQL----------KQFPTLDLPFLKSLTLTMNKGSISFKKVALPS 351

Query: 700 IHGLDLSCNKL--IGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNN 757
           +  LDLS N L   G           +  L+LS N     +   F  L +++ LD  ++ 
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHST 410

Query: 758 LTGKIPPR-LVELNALAVFTVAHNNLSGKIPE 788
           L         + L  L    +++ N       
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  146 bits (371), Expect = 6e-37
 Identities = 77/454 (16%), Positives = 138/454 (30%), Gaps = 75/454 (16%)

Query: 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLT 410
                +L ++IL  N +            ++  L     KL       IG+ L  L  L 
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ-LITLKKLN 134

Query: 411 ISFNAFNG-SIPSSFGDMNSLIYLDLSNNQLTGEIPEH---LAMGCFNLEYLLLSNNSLQ 466
           ++ N  +   +P+ F ++ +L+++DLS N +          L         L +S N + 
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194

Query: 467 GQLFSKKINLTKLKRLNLDGNHFIGGIPE-SLSNCSSLQGLYISDNDISGSIPTWMGNIS 525
             +  +     KL  L L GN     I +  L N + L    +   +        +   S
Sbjct: 195 -FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253

Query: 526 FLDAII--------MPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLL 577
            ++ +         +   +       +F  L  +  + L+  +I          K     
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE---DVPKHFKWQ 310

Query: 578 TLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQ 637
           +L +   +L          L  L+ L L  N   G +  +   L  L  LDLS N  S  
Sbjct: 311 SLSIIRCQLKQFPTLD---LPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFS 365

Query: 638 IPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPL 697
                 +   +                                                 
Sbjct: 366 GCCSYSDLGTN------------------------------------------------- 376

Query: 698 ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPV-TFSNLRQVESLDLSYN 756
            S+  LDLS N  I  + +    L  +  L+   + L        F +L ++  LD+SY 
Sbjct: 377 -SLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 757 NLTGKIPPRLVELNALAVFTVAHNNLSGKIPERI 790
           N         + L +L    +A N+        +
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  135 bits (343), Expect = 2e-33
 Identities = 60/375 (16%), Positives = 117/375 (31%), Gaps = 63/375 (16%)

Query: 418 GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLT 477
           GS+      + ++      + +L+ ++P+ +     + + + LS N L+        N +
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIPS---STKNIDLSFNPLKILKSYSFSNFS 56

Query: 478 KLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHL 537
           +L+ L+L          ++      L  L ++ N I    P     ++ L+ ++  +  L
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 538 EGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRL 597
                    QL  L+ L+++ N I    L   FS  + L+ +DL  N +     N +  L
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 598 SQLR----YLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPP--CLDNTSLHREE 651
            +       L ++ N  +  +  +  Q  KL  L L  N  S  I      +   LH   
Sbjct: 177 RENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV-- 233

Query: 652 GYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLI 711
                                                           I G       L 
Sbjct: 234 ---------------------------------------------HRLILGEFKDERNLE 248

Query: 712 GEIPSRIGELIRIHT--LNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVEL 769
              PS +  L  +      L+  N      V F  L  V ++ L+  ++       + + 
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKH 306

Query: 770 NALAVFTVAHNNLSG 784
                 ++    L  
Sbjct: 307 FKWQSLSIIRCQLKQ 321

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  122 bits (309), Expect = 4e-29
 Identities = 66/344 (19%), Positives = 112/344 (32%), Gaps = 50/344 (14%)

Query: 27  IDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSH 86
           ID   L   +    +   F     + ++ L+G +I      + LE +      + L +  
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI------KYLEDVPKHFKWQSLSIIR 316

Query: 87  NSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVV-PK 145
                        L  LK+L+L  N+        +  +L +L  LD+S N +        
Sbjct: 317 CQLKQ---FPTLDLPFLKSLTLTMNKGSI---SFKKVALPSLSYLDLSRNALSFSGCCSY 370

Query: 146 DYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHL 205
              G   LR LDLS       S    +      L+ L  + +   K VT       L  L
Sbjct: 371 SDLGTNSLRHLDLSFNGAIIMS---ANFMGLEELQHLDFQHSTL-KRVTEFSAFLSLEKL 426

Query: 206 QELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQ 265
             L I + +           LTSL  L +  N   +N  S+   + T++  L LS    +
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 266 -IPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPK 324
            I   +  F    +L++ +   N +     S ++ L     L+++  S            
Sbjct: 487 QISWGV--FDTLHRLQLLNMSHNNLLFLDSSHYNQLY---SLSTLDCSF----------- 530

Query: 325 FLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLS 368
                           N        L     +L    L NNS++
Sbjct: 531 ----------------NRIETSKGILQHFPKSLAFFNLTNNSVA 558

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  218 bits (557), Expect = 9e-60
 Identities = 87/630 (13%), Positives = 183/630 (29%), Gaps = 110/630 (17%)

Query: 50  QLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLA 109
           ++  L L+G    G V +     +  L+ LK L    +S   S         +       
Sbjct: 324 RVTGLSLAGFGAKGRVPDA----IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 110 YNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKV 169
            +R+        LD    L   D+  + I+      + + ++K   + L   +I + +  
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN---PEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 170 LHSI----GSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLAN 225
           +  I         L+ +Y  ++ F                ++   D+     +     +N
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFT-------YDNIAVDWEDANSDYAKQYENEELSWSN 489

Query: 226 LTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGR 285
           L  L  + + +      L    L  L  ++ L ++ N                       
Sbjct: 490 LKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACN----------------------- 525

Query: 286 ENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGE 345
                              +  S +      +D   +         ++   +   N+   
Sbjct: 526 -------------------RGISAA---QLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563

Query: 346 FPSWLLENNTNLRSIILANNSLSGPFRLPTRSR-KNIIALDISYNKLQGHIPVEIGKVLP 404
             S  L+    L  +   +N +     L        +  L + YN+++  IP +      
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVRH---LEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTD 619

Query: 405 NLGFLTISFNAFNGSIPS--SFGDMNSLIYLDLSNNQLTGEIPEHLA----MGCFNLEYL 458
            +  L  S N     IP+  +   +  +  +D S N++  E              N   +
Sbjct: 620 QVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 459 LLSNNSLQGQLFSKKINLTKLKRLNLDGNHF-------IGGIPESLSNCSSLQGLYISDN 511
            LS N +Q          + +  + L  N         +     +  N   L  + +  N
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

Query: 512 DISGSIPT--WMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGA 569
            ++ S+        + +L  + +  N      P++      L+   +             
Sbjct: 739 KLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ---------- 786

Query: 570 FSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDL 629
                     D   NR+    P  +     L  L + +N+   +V  +L    +L +LD+
Sbjct: 787 ---------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDI 834

Query: 630 SHN-NFSGQIPPCLDNTSLHREEGYYDLIP 658
           + N N S  +               YD   
Sbjct: 835 ADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  213 bits (545), Expect = 3e-58
 Identities = 85/612 (13%), Positives = 167/612 (27%), Gaps = 117/612 (19%)

Query: 199 LCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLI 258
           L     +  L +      G +P  +  LT L+VL    +  T    S  L     +   +
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSET---VSGRLFGDEELTPDM 375

Query: 259 LSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSD 318
                 +I M  +  F            +Q     +    ++    ++  I         
Sbjct: 376 SEERKHRIRMHYKKMF---------LDYDQRLNLSDLLQDAINRNPEMKPIKKDSR---- 422

Query: 319 GGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSR 378
                        L+   I ++  R  F S  ++  T L+ I  AN+  +          
Sbjct: 423 -----------ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY---DNIAVD 468

Query: 379 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNN 438
                 +  Y K   +  +     L +L  + +        +P    D+  L  L+++ N
Sbjct: 469 WED--ANSDYAKQYENEELSWSN-LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525

Query: 439 QLTGEIPEHLAM--------GCFNLEYLLLSNNSLQGQLFSKKI-NLTKLKRLNLDGNHF 489
           +                       ++   +  N+L+    S  +  + KL  L+   N  
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV 585

Query: 490 IGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEG-PIPSEFCQL 548
                E+      L  L +  N I      +      ++ +    N L+  P       +
Sbjct: 586 --RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV 643

Query: 549 DYLEILDLSKNNIAGRPLNGAFS----KCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLI 604
             +  +D S N I     N + S    K     T+ L  N +           S +  +I
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 605 LANNNFE-------GEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLI 657
           L+NN                      L  +DL  N  +  +      T+L          
Sbjct: 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTL---------- 752

Query: 658 PTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSR 717
                                                     +  +D+S N      P++
Sbjct: 753 ----------------------------------------PYLSNMDVSYNCF-SSFPTQ 771

Query: 718 IGELIRIHTLNLSR------NNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNA 771
                ++    +        N +    P   +    +  L +  N++  K+  +L     
Sbjct: 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQ 828

Query: 772 LAVFTVAHNNLS 783
           L +  +A N   
Sbjct: 829 LYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  210 bits (537), Expect = 4e-57
 Identities = 77/584 (13%), Positives = 164/584 (28%), Gaps = 89/584 (15%)

Query: 72  KLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGL 131
            L     +  L L+       V  ++  L+ LK LS   +    S  +   + L+  +  
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT-PDMS 376

Query: 132 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAK 191
           +   + I            ++L   DL    I         +        + LK      
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP----EMKPIKKDSRISLKDTQI-- 430

Query: 192 TVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHL 251
                              +  + I  +   +  LT L++++  ++  T       +   
Sbjct: 431 ------------------GNLTNRITFISKAIQRLTKLQIIYFANSPFT----YDNIAVD 468

Query: 252 TSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISL 311
                   +  +    +S   + N   L            ++      L    +L S+++
Sbjct: 469 WEDANSDYAKQYENEELS---WSNLKDLTDVELYNCPNMTQLPDFLYDLP---ELQSLNI 522

Query: 312 SDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSG-P 370
           +                      +  + +       +   +    ++   +  N+L   P
Sbjct: 523 A------------------CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564

Query: 371 FRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSL 430
                +    +  LD  +NK++ H+    G     L  L + +N             + +
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVR-HLE-AFGT-NVKLTDLKLDYNQIEEIPEDFCAFTDQV 621

Query: 431 IYLDLSNNQLTGEIPEHLAMG-CFNLEYLLLSNNSLQGQ-----LFSKKINLTKLKRLNL 484
             L  S+N+L   IP        + +  +  S N +  +                  + L
Sbjct: 622 EGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680

Query: 485 DGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSE 544
             N       E  +  S +  + +S+N ++ SIP                 +   P    
Sbjct: 681 SYNEIQKFPTELFATGSPISTIILSNNLMT-SIP----------------ENSLKPKDGN 723

Query: 545 FCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYL- 603
           +     L  +DL  N +     +   +   YL  +D+  N  +   P      SQL+   
Sbjct: 724 YKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFG 782

Query: 604 -----ILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCL 642
                    N    + P  +     L  L +  N+    +   L
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  200 bits (509), Expect = 2e-53
 Identities = 96/646 (14%), Positives = 180/646 (27%), Gaps = 131/646 (20%)

Query: 7   SDCCQWQSVLCNA--TTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGC 64
            +   W            RV  + L        +           +L+ L    ++    
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP---DAIGQLTELKVLSFGTHSETVS 362

Query: 65  VENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDS 124
               G E+L+   + +        +    L     L+    L  A NR      I++   
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 125 LS-NLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSG-----------------LRIRDG 166
           +S     +    N I  +   K  + L KL+ +  +                     +  
Sbjct: 423 ISLKDTQIGNLTNRITFI--SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480

Query: 167 SKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIG--------- 217
                S  +   L  + L +      +     L +L  LQ L I  N  I          
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQL--PDFLYDLPELQSLNIACNRGISAAQLKADWT 538

Query: 218 SLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYS 277
            L         +++ ++  N L E  +S+ L  +  + LL   +N  +    LE F    
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR---HLEAFGTNV 595

Query: 278 KLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVII 337
           KL       NQI  EI     + T   Q+  +  S                         
Sbjct: 596 KLTDLKLDYNQI-EEIPEDFCAFTD--QVEGLGFSH------------------------ 628

Query: 338 SDVNMRGEFPSWL-LENNTNLRSIILANNSLSG-----PFRLPTRSRKNIIALDISYNKL 391
              N     P+    ++   + S+  + N +          +      N   + +SYN++
Sbjct: 629 ---NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685

Query: 392 QGHIPVEIGKVLPNLGFLTISFNAF-------NGSIPSSFGDMNSLIYLDLSNNQLTGEI 444
           Q   P E+      +  + +S N               ++ +   L  +DL  N+LT  +
Sbjct: 686 QK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL 743

Query: 445 PEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQ 504
            +                             L  L  +++  N F    P    N S L+
Sbjct: 744 SDDFRAT-----------------------TLPYLSNMDVSYNCF-SSFPTQPLNSSQLK 779

Query: 505 GLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR 564
              I     +                    N +    P+       L  L +  N+I   
Sbjct: 780 AFGIRHQRDAEG------------------NRILRQWPTGITTCPSLIQLQIGSNDIRKV 821

Query: 565 PLNGAFSKCSYLLTLDLCNNRL-NGNIPNWMGRLSQLRYLILANNN 609
                      L  LD+ +N   + ++ +    +    Y++L +  
Sbjct: 822 D----EKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  191 bits (486), Expect = 2e-50
 Identities = 75/545 (13%), Positives = 156/545 (28%), Gaps = 97/545 (17%)

Query: 306 LTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANN 365
             + + +   D  G      L +   +  + ++    +G  P   +   T L+ +    +
Sbjct: 299 SLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD-AIGQLTELKVLSFGTH 357

Query: 366 SLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNG------- 418
           S +   RL           +   ++++ H           L    +  +A N        
Sbjct: 358 SETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417

Query: 419 ---------------------SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY 457
                                 I  +   +  L  +  +N+  T +          + E 
Sbjct: 418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA------VDWED 471

Query: 458 LLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISG-- 515
                            NL  L  + L     +  +P+ L +   LQ L I+ N      
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 516 -------SIPTWMGNISFLDAIIMPDNHLEG-PIPSEFCQLDYLEILDLSKNNIAGRPLN 567
                   +         +    M  N+LE  P  +   ++  L +LD   N +      
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-- 589

Query: 568 GAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEG-EVPLRLCQLQKLRL 626
            AF     L  L L  N++     ++     Q+  L  ++N  +          +  +  
Sbjct: 590 -AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648

Query: 627 LDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYN----VGPSMGEKETID 682
           +D S+N    +      +   ++      +          +SYN        +       
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVT---------LSYNEIQKFPTELFAT---- 695

Query: 683 FTTKERSYTYKGQPLESIHGLDLSCNKL-------IGEIPSRIGELIRIHTLNLSRNNLT 735
                            I  + LS N +       +            + T++L  N LT
Sbjct: 696 --------------GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741

Query: 736 GTIP--VTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAH------NNLSGKIP 787
            ++      + L  + ++D+SYN  +   P + +  + L  F + H      N +  + P
Sbjct: 742 -SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799

Query: 788 ERIAQ 792
             I  
Sbjct: 800 TGITT 804

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  119 bits (300), Expect = 9e-28
 Identities = 47/370 (12%), Positives = 111/370 (30%), Gaps = 50/370 (13%)

Query: 433 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGG 492
           + +   +    I ++ A+     E L   N        +  I+       N + + +   
Sbjct: 257 VPIQLKETAEYIKDYKALKAI-WEALDGKNWRYYSGTINNTIHSLNWN-FNKELDMWGDQ 314

Query: 493 IPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE 552
               L N   + GL ++     G +P  +G ++ L  +    +           +    +
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 553 ILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGN---IPNWMGRLSQLRYLILAN-N 608
           + +  K+ I              L   DL  + +N N    P        L+   + N  
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT 434

Query: 609 NFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVS 668
           N    +   + +L KL+++  +++ F+          +       Y+             
Sbjct: 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE---------- 484

Query: 669 YNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLN 728
                S                      L+ +  ++L     + ++P  + +L  + +LN
Sbjct: 485 ----LSWSN-------------------LKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521

Query: 729 LSRNNLTG---------TIPVTFSNLRQVESLDLSYNNLTG-KIPPRLVELNALAVFTVA 778
           ++ N              +        +++   + YNNL        L ++  L +    
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581

Query: 779 HNNLSGKIPE 788
           HN +   +  
Sbjct: 582 HNKVR-HLEA 590

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  110 bits (276), Expect = 7e-25
 Identities = 54/350 (15%), Positives = 97/350 (27%), Gaps = 64/350 (18%)

Query: 49  QQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSL 108
            +L  LD   N +        LE       L  L L +N          A    ++ L  
Sbjct: 573 VKLGLLDCVHNKV------RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626

Query: 109 AYNRLEGSINIEELDSLSNLEGLDMSDNEI----DNLVVPKDYRGLRKLRFLDLSGLRIR 164
           ++N+L+   NI    S+  +  +D S N+I     N+    D         + LS   I+
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686

Query: 165 DGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLA 224
                     +   + T+ L +N                 +  +     + +        
Sbjct: 687 --KFPTELFATGSPISTIILSNNL----------------MTSI---PENSLKPKDGNYK 725

Query: 225 NLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQ-IPMSLEPFFNYSKLKIFH 283
           N   L  + +  N+LT          L  +  + +S N F   P       N S+LK F 
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQP---LNSSQLKAFG 782

Query: 284 GRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMR 343
            R  +         + +                      P  +     L  + I   N  
Sbjct: 783 IRHQRDA-----EGNRIL------------------RQWPTGITTCPSLIQLQIGS-NDI 818

Query: 344 GEFPSWLLENNTNLRSIILANNSLSG--PFRLPTRSRKNIIALDISYNKL 391
            +    L      L  + +A+N         +       +  L     + 
Sbjct: 819 RKVDEKLT---PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  196 bits (500), Expect = 2e-52
 Identities = 112/588 (19%), Positives = 199/588 (33%), Gaps = 92/588 (15%)

Query: 74  SGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDM 133
             L+  + L LS N       SS   L  L+ L L       +I+ E   +L NL  LD+
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 134 SDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTV 193
             ++I  L  P  ++GL  L  L L    + D         +  +L  L L  N   +++
Sbjct: 81  GSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI-RSL 138

Query: 194 TTTQGLCELAHLQELYIDHNDFIGSLPWCLANLT--SLRVLHVPDNQLTENLSSSPLMHL 251
                  +L  L+ +    N         L  L   +L    +  N L   +S      +
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 252 TSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISL 311
                ++L                           N    +I  + S+   K Q  S+ L
Sbjct: 199 NPFRNMVLEILDV--------------------SGNGWTVDITGNFSNAISKSQAFSLIL 238

Query: 312 SDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPF 371
                                                       ++       +++  P 
Sbjct: 239 ------------------------------------------AHHIMGAGFGFHNIKDPD 256

Query: 372 R--LPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNS 429
           +      +R ++  LD+S+  +   +   + + L +L  L +++N  N     +F  +++
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315

Query: 430 LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKINLTKLKRLNLDG 486
           L  L+LS N L  E+      G   + Y+ L  N    +Q Q F     L KL+ L+L  
Sbjct: 316 LQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK---FLEKLQTLDLRD 371

Query: 487 NHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEG-PIPSEF 545
           N        ++    S+  +++S N +       +      + I + +N LE   I    
Sbjct: 372 NAL-----TTIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFL 422

Query: 546 CQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNI-----PNWMGRLSQL 600
            ++ +L+IL L++N  +    +   S+   L  L L  N L          +    LS L
Sbjct: 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482

Query: 601 RYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLH 648
           + L L +N      P     L  LR L L+ N  +  +       +L 
Sbjct: 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLE 529

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  187 bits (476), Expect = 2e-49
 Identities = 110/604 (18%), Positives = 205/604 (33%), Gaps = 72/604 (11%)

Query: 43  SLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSV-LSSLAGLS 101
            +       E L LS N I              L  L+ L+L       ++   +   L 
Sbjct: 18  QVPQVLNTTERLLLSFNYI----RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 102 SLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDY-RGLRKLRFLDLSG 160
           +L+ L L  +++   ++ +    L +L  L +    + + V+   Y R L+ L  LDLS 
Sbjct: 74  NLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 161 LRIRDGSKVLHSIGSFPSLKTLYLKSNNFAK-TVTTTQGLCELAHLQELYIDHNDFIGSL 219
            +IR    +  S G   SLK++   SN          + L     L    +  N     +
Sbjct: 133 NQIRSL-YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-TLSFFSLAANSLYSRV 190

Query: 220 PWCLANL------TSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPF 273
                          L +L V  N  T +++ +    ++  +   L   H          
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH---------- 240

Query: 274 FNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLE 333
                +       + I  + + +  +   +  +  + LS           +       L+
Sbjct: 241 ----HIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLN--SRVFETLKDLK 293

Query: 334 FVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQG 393
            + ++   +  +          NL+ + L+ N L   +         +  +D+  N +  
Sbjct: 294 VLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA- 351

Query: 394 HIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF 453
            I  +  K L  L  L +  NA      ++   + S+  + LS N+L       L     
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLV-----TLPKINL 401

Query: 454 NLEYLLLSNNSLQG-QLFSKKINLTKLKRLNLDGNHFIGGIPESL-SNCSSLQGLYISDN 511
               + LS N L+   +    + +  L+ L L+ N F     +   S   SL+ L++ +N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 512 DISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFS 571
            +  +  T                         F  L +L++L L+ N +   P  G FS
Sbjct: 462 MLQLAWET-------------------ELCWDVFEGLSHLQVLYLNHNYLNSLP-PGVFS 501

Query: 572 KCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSH 631
             + L  L L +NRL     N +   + L  L ++ N               L +LD++H
Sbjct: 502 HLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLA---PNPDVFVSLSVLDITH 556

Query: 632 NNFS 635
           N F 
Sbjct: 557 NKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  146 bits (371), Expect = 2e-36
 Identities = 98/514 (19%), Positives = 177/514 (34%), Gaps = 77/514 (14%)

Query: 30  LSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSF 89
           L     S   L    F   + L  LDLS N I     +        L++LK +D S N  
Sbjct: 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS---FGKLNSLKSIDFSSNQI 160

Query: 90  NNSVLSSLAGLS--SLKNLSLAYNRLEGSINIEELDSLS-----NLEGLDMSDNEIDNLV 142
                  L  L   +L   SLA N L   ++++    ++      LE LD+S N     +
Sbjct: 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI 220

Query: 143 VPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAK-TVTTTQGLCE 201
                  + K +   L                    +       +N       T  GL  
Sbjct: 221 TGNFSNAISKSQAFSLILA---------------HHIMGAGFGFHNIKDPDQNTFAGLAR 265

Query: 202 LAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSN 261
              ++ L + H             L  L+VL++  N++ + ++      L ++++L LS 
Sbjct: 266 S-SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSY 323

Query: 262 NHFQ-IPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGG 320
           N    +  S   F+   K+     ++N I                   I           
Sbjct: 324 NLLGELYSSN--FYGLPKVAYIDLQKNHI-----------------AIIQ---------- 354

Query: 321 TIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKN 380
              +       L+ + + D  +        +    ++  I L+ N L    ++   +   
Sbjct: 355 --DQTFKFLEKLQTLDLRDNALTT------IHFIPSIPDIFLSGNKLVTLPKINLTANL- 405

Query: 381 IIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNG-SIPSSFGDMNSLIYLDLSNNQ 439
              + +S N+L+    +     +P+L  L ++ N F+  S   +  +  SL  L L  N 
Sbjct: 406 ---IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

Query: 440 LTGEIPEHLAMGCF----NLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPE 495
           L       L    F    +L+ L L++N L         +LT L+ L+L+ N  +  +  
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR-LTVLSH 521

Query: 496 SLSNCSSLQGLYISDNDISGSIPTWMGNISFLDA 529
           +    ++L+ L IS N +    P    ++S LD 
Sbjct: 522 N-DLPANLEILDISRNQLLAPNPDVFVSLSVLDI 554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  146 bits (371), Expect = 2e-36
 Identities = 121/730 (16%), Positives = 220/730 (30%), Gaps = 160/730 (21%)

Query: 202 LAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSN 261
           L   + L +  N            L  L++L +        +      +L ++ +L L +
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 262 NHFQ-IPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGG 320
           +    +      F     L         +                           SD  
Sbjct: 83  SKIYFLHPDA--FQGLFHLFELRLYFCGL---------------------------SDAV 113

Query: 321 TIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFR--LPTRSR 378
               +  +   L  + +S   +R  +         +L+SI  ++N +       L     
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173

Query: 379 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLTIS-----------------FNAFNGSIP 421
           K +    ++ N L   + V+ GK +     + +                   NA + S  
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233

Query: 422 SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF--NLEYLLLSNN---SLQGQLFSKKINL 476
            S    + ++      + +  +  ++   G    ++ +L LS+    SL  ++F     L
Sbjct: 234 FSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE---TL 289

Query: 477 TKLKRLNLDGNHFIGGIPE-SLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDN 535
             LK LNL  N  I  I + +     +LQ L +S N +   + +                
Sbjct: 290 KDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLG-ELYSSN-------------- 333

Query: 536 HLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMG 595
                    F  L  +  +DL KN+IA    +  F     L TLDL +N L   I     
Sbjct: 334 ---------FYGLPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNALT-TIHF--- 379

Query: 596 RLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYD 655
            +  +  + L+ N       + L       L+ LS N     +        +        
Sbjct: 380 -IPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLE-NLDILYFLLRVPH------ 427

Query: 656 LIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIP 715
                  +  I++ N            F++     T       S+  L L  N L     
Sbjct: 428 ------LQILILNQN-----------RFSSCSGDQTPSE--NPSLEQLFLGENMLQLAWE 468

Query: 716 SRIGE-----LIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLT----GKIPPRL 766
           + +       L  +  L L+ N L    P  FS+L  +  L L+ N LT      +P  L
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANL 528

Query: 767 VELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLC------------------ 808
             L+      ++ N L    P+    F +        N F+C                  
Sbjct: 529 EILD------ISRNQLLAPNPD---VFVSLSVLDITHNKFICECELSTFINWLNHTNVTI 579

Query: 809 -GPPLPKICNENRSSTE---ASTHDNEEDDNLIDMDSFYITFTVSSVIVILGIIGVLWAN 864
            GPP    C    S +     S      D+  +     +  F V +V + L ++ +L   
Sbjct: 580 AGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVT 639

Query: 865 PYWRHRWFYL 874
            +    +   
Sbjct: 640 KFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  131 bits (331), Expect = 2e-31
 Identities = 75/384 (19%), Positives = 135/384 (35%), Gaps = 51/384 (13%)

Query: 411 ISFNAFNG--SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQ 468
           I+F  F     +P     +N+   L LS N +   +          L+ L L +      
Sbjct: 8   IAFYRFCNLTQVPQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 469 LFSKKI-NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFL 527
           +  +   NL  L+ L+L  +      P++      L  L +    +S ++          
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK-------- 115

Query: 528 DAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLN 587
                            F  L  L  LDLSKN I    L+ +F K + L ++D  +N++ 
Sbjct: 116 --------------DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

Query: 588 GNIPNWMGRLSQ--LRYLILANNNFEGEVPLRLCQLQK------LRLLDLSHNNFSGQIP 639
               + +  L    L +  LA N+    V +   +         L +LD+S N ++  I 
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221

Query: 640 PCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLES 699
               N     +   + LI  +        ++           +    +++ T+ G    S
Sbjct: 222 GNFSNAISKSQA--FSLILAHHIMGAGFGFH-----------NIKDPDQN-TFAGLARSS 267

Query: 700 IHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLT 759
           +  LDLS   +          L  +  LNL+ N +       F  L  ++ L+LSYN L 
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

Query: 760 GKIPPRLVELNALAVFTVAHNNLS 783
                    L  +A   +  N+++
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIA 351

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  184 bits (470), Expect = 6e-50
 Identities = 114/568 (20%), Positives = 204/568 (35%), Gaps = 69/568 (12%)

Query: 48  FQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLS 107
               ++LDLS N +                 L+ LDLS          +   LS L  L 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 108 LAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGS 167
           L  N ++ S+ +     LS+L+ L   +  + +L        L+ L+ L+++   I+   
Sbjct: 83  LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSF- 139

Query: 168 KVLHSIGSFPSLKTLYLKSNNFAK-TVTTTQGLCEL-AHLQELYIDHNDFIGSLPWCLAN 225
           K+     +  +L+ L L SN       T  + L ++      L +  N  +  +      
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFK 198

Query: 226 LTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGR 285
              L  L + +N  + N+  + +  L  +E+  L    F+   +LE              
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE-------------- 244

Query: 286 ENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGE 345
                 + + S         +    L+ + D     I        ++    +  V +   
Sbjct: 245 ------KFDKSALEGLCNLTIEEFRLA-YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 346 FPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPN 405
                   N   + + L N       + PT   K++  L  + NK   +   E+   LP+
Sbjct: 298 KD---FSYNFGWQHLELVNCKFG---QFPTLKLKSLKRLTFTSNKGG-NAFSEVD--LPS 348

Query: 406 LGFLTISFNAFN--GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN 463
           L FL +S N  +  G    S     SL YLDLS N +   +  +  +G   LE+L   ++
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF-LGLEQLEHLDFQHS 406

Query: 464 SLQG-QLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMG 522
           +L+    FS  ++L  L  L++   H         +  SSL+ L ++ N    +      
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL---- 462

Query: 523 NISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLC 582
                              P  F +L  L  LDLS+  +       AF+  S L  L++ 
Sbjct: 463 -------------------PDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMA 502

Query: 583 NNRLNGNIPNWMGRLSQLRYLILANNNF 610
           +N+L         RL+ L+ + L  N +
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  179 bits (457), Expect = 3e-48
 Identities = 95/520 (18%), Positives = 178/520 (34%), Gaps = 26/520 (5%)

Query: 126 SNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLK 185
            + + LD+S N + +L     +    +L+ LDLS   I+       +  S   L TL L 
Sbjct: 28  FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIED--GAYQSLSHLSTLILT 84

Query: 186 SNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSS 245
            N              L+ LQ+L     +      + + +L +L+ L+V  N +      
Sbjct: 85  GNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 246 SPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQ 305
               +LT++E L LS+N  Q  +         ++ + +   +     +         + +
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 306 LTSISLSDHGDSDGGTIPKFLY----HQHHLEFVIISDVNMRGEFPSWLLENNTNLRSII 361
           L  ++L ++ DS                H L      +     +F    LE   NL    
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 362 LANNSLSGPFRLPTRSRKNIIAL---DISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNG 418
                L             +  +    +    ++            +L  +   F  F  
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF-- 319

Query: 419 SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKI--NL 476
                   + SL  L  ++N+      E   +   +LE+L LS N L  +    +     
Sbjct: 320 ----PTLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 477 TKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWM-GNISFLDAIIMPDN 535
           T LK L+L  N  +  +  +      L+ L    +++       +  ++  L  + +   
Sbjct: 373 TSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 536 HLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMG 595
           H        F  L  LE+L ++ N+     L   F++   L  LDL   +L    P    
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 596 RLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635
            LS L+ L +A+N  +        +L  L+ + L  N + 
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  144 bits (365), Expect = 2e-36
 Identities = 89/489 (18%), Positives = 153/489 (31%), Gaps = 78/489 (15%)

Query: 40  LNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAG 99
           L        + L+ L+++ N I      E     S L+NL+ LDLS N   +   + L  
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEY---FSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 100 LSSLKN----LSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRF 155
           L  +      L L+ N +   I       +  L  L + +N     V+    +GL  L  
Sbjct: 172 LHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 156 LDLSGLRIRDGSKVLH-SIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHND 214
             L     R+   +      +   L  L ++                   L  L    +D
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR----------------LAYLDYYLDD 273

Query: 215 FIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFF 274
            I         LT++    +    +      S       +EL+      F       P  
Sbjct: 274 IIDLFN----CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF-------PTL 322

Query: 275 NYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEF 334
               LK      N+       +  S      L  + LS                 + L F
Sbjct: 323 KLKSLKRLTFTSNKG-----GNAFSEVDLPSLEFLDLSR----------------NGLSF 361

Query: 335 VIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPT--RSRKNIIALDISYNKLQ 392
                        S      T+L+ + L+ N +     + +     + +  LD  ++ L+
Sbjct: 362 K---------GCCSQSDFGTTSLKYLDLSFNGVI---TMSSNFLGLEQLEHLDFQHSNLK 409

Query: 393 GHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGC 452
                 +   L NL +L IS      +    F  ++SL  L ++ N         +    
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 453 FNLEYLLLSNNSLQG---QLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYIS 509
            NL +L LS   L+      F+   +L+ L+ LN+  N             +SLQ +++ 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFN---SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526

Query: 510 DNDISGSIP 518
            N    S P
Sbjct: 527 TNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  138 bits (350), Expect = 2e-34
 Identities = 79/432 (18%), Positives = 146/432 (33%), Gaps = 38/432 (8%)

Query: 370 PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNS 429
           P  LP     +   LD+S+N L+ H+        P L  L +S          ++  ++ 
Sbjct: 23  PDNLPF----STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 430 LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHF 489
           L  L L+ N +   +      G  +L+ L+    +L         +L  LK LN+  N  
Sbjct: 78  LSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 490 -IGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMP----DNHLEGPIPSE 544
               +PE  SN ++L+ L +S N I     T +  +  +  + +      N +    P  
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 545 FCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLC------NNRLNGNIPNWMGRLS 598
           F ++  L  L L  N  +   +       + L    L          L     + +  L 
Sbjct: 197 FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 599 QLRYLIL---ANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYD 655
            L          + +  ++      L  +    L       ++     N           
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQH------ 308

Query: 656 LIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKL--IGE 713
            +     ++          +   + + FT+ +    +    L S+  LDLS N L   G 
Sbjct: 309 -LELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 714 IPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPR--LVELNA 771
                     +  L+LS N +  T+   F  L Q+E LD  ++NL  ++      + L  
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRN 422

Query: 772 LAVFTVAHNNLS 783
           L    ++H +  
Sbjct: 423 LIYLDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  122 bits (308), Expect = 4e-29
 Identities = 75/461 (16%), Positives = 150/461 (32%), Gaps = 41/461 (8%)

Query: 345 EFPSWLLENNTNLRSIILANNSLSGPFRLPT---RSRKNIIALDISYNKLQGHIPVEIGK 401
              S+   +   L+ + L+   +     +     +S  ++  L ++ N +Q  + +    
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFS 97

Query: 402 VLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS 461
            L +L  L               G + +L  L++++N +             NLE+L LS
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 462 NNSLQG---QLFSKKINLTKLK-RLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSI 517
           +N +Q            +  L   L+L  N  +  I         L  L + +N  S ++
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLHKLTLRNNFDSLNV 216

Query: 518 P-------TWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEI--LDLSKNNIAGRPLNG 568
                     +     +      + +LE    S    L  L I    L+  +     +  
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276

Query: 569 AFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLD 628
            F+  + + +  L +  +   + ++       ++L L N  F         +L+ L+ L 
Sbjct: 277 LFNCLTNVSSFSLVSVTIE-RVKDFSY-NFGWQHLELVNCKFGQ---FPTLKLKSLKRLT 331

Query: 629 LSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEK--ETIDFTTK 686
            + N         +D  SL     + DL    RN             G    + +D +  
Sbjct: 332 FTSNKGGN-AFSEVDLPSLE----FLDL---SRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 687 ERSYTYKG-QPLESIHGLDLSCNKLIGEIPSRI--GELIRIHTLNLSRNNLTGTIPVTFS 743
                      LE +  LD   + L  ++        L  +  L++S  +        F+
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

Query: 744 NLRQVESLDLSYNNLTGKIPPR-LVELNALAVFTVAHNNLS 783
            L  +E L ++ N+      P    EL  L    ++   L 
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  120 bits (303), Expect = 2e-28
 Identities = 99/565 (17%), Positives = 176/565 (31%), Gaps = 98/565 (17%)

Query: 242 NLSSSPLMHLTSIELLILSNNHFQIPMSLEP--FFNYSKLKIFHGRENQIFGEIESSHSS 299
           N    P     S + L LS N  +    L    FF++ +L++      +I          
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSRCEI---------- 64

Query: 300 LTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRS 359
                   +I                     HL  +I++  N             ++L+ 
Sbjct: 65  -------QTIE------------DGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQK 104

Query: 360 IILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGS 419
           ++    +L+     P    K +  L++++N +Q     E    L NL  L +S N     
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 420 IPSSFGDMNSL----IYLDLSNNQLTGEIPEHLAMGCF---NLEYLLLSNNSLQGQLFSK 472
             +    ++ +    + LDLS N +       +  G F    L  L L NN     +   
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMN-----FIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 473 KI-NLTKLKRLNLDGNHF-----IGGIPES-LSNCSSLQGLYISDNDISGSIPTWMG--- 522
            I  L  L+   L    F     +    +S L    +L         +   +   +    
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 523 NISFLDAIIMPDNHLEG-PIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDL 581
            ++ + +  +    +E     S      +LE+++          L         L  L  
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS-------LKRLTF 332

Query: 582 CNNRLNGNIPNWMGRLSQLRYLILANN--NFEGEVPLRLCQLQKLRLLDLSHNNFSGQIP 639
            +N+   N  + +  L  L +L L+ N  +F+G           L+ LDLS N       
Sbjct: 333 TSNKGG-NAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390

Query: 640 PCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLES 699
             L    L     + D             ++           +         +    L +
Sbjct: 391 NFLGLEQLE----HLDF-----------QHS-----------NLKQMSEFSVFLS--LRN 422

Query: 700 IHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTI-PVTFSNLRQVESLDLSYNNL 758
           +  LD+S              L  +  L ++ N+      P  F+ LR +  LDLS   L
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 759 TGKIPPRLVELNALAVFTVAHNNLS 783
               P     L++L V  +A N L 
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  108 bits (272), Expect = 1e-24
 Identities = 59/360 (16%), Positives = 109/360 (30%), Gaps = 22/360 (6%)

Query: 434 DLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGI 493
                    +IP++L     + + L LS N L+        +  +L+ L+L         
Sbjct: 13  QCMELNFY-KIPDNLPF---STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 494 PESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEI 553
             +  + S L  L ++ N I          +S L  ++  + +L          L  L+ 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 554 LDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILA---NNNF 610
           L+++ N I    L   FS  + L  LDL +N++       +  L Q+  L L+   + N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 611 EGEVPLRLCQLQKLRLLDLSHNNFSGQIPP--CLDNTSLHREEGYYDLIPTYRNEYDIVS 668
              +     +  +L  L L +N  S  +          L              N      
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF-D 247

Query: 669 YNVGPSMGEKETIDF-----TTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIR 723
            +    +      +F                  L ++    L     I  +         
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSY-NFG 305

Query: 724 IHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
              L L               L+ ++ L  + N          V+L +L    ++ N LS
Sbjct: 306 WQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLS 360

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 97.1 bits (242), Expect = 6e-21
 Identities = 62/298 (20%), Positives = 101/298 (33%), Gaps = 38/298 (12%)

Query: 39  YLNFSLFTPFQQL--ESLDLSGNNIAG-------------------CVENEGLEKLSGLS 77
             + S       L  E   L+  +                       V  E ++  S   
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

Query: 78  NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNE 137
             + L+L +  F      +L  L SLK L+   N+     N      L +LE LD+S N 
Sbjct: 305 GWQHLELVNCKFGQ--FPTL-KLKSLKRLTFTSNKG---GNAFSEVDLPSLEFLDLSRNG 358

Query: 138 IDNLVVPKDY-RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTT 196
           +           G   L++LDLS   +     +  +      L+ L  + +N  K ++  
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGV---ITMSSNFLGLEQLEHLDFQHSNL-KQMSEF 414

Query: 197 QGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIEL 256
                L +L  L I H     +       L+SL VL +  N   EN        L ++  
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 257 LILSNNHFQ-IPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSD 313
           L LS    + +  +   F + S L++ +   NQ+    +     LT    L  I L  
Sbjct: 475 LDLSQCQLEQLSPT--AFNSLSSLQVLNMASNQLKSVPDGIFDRLT---SLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 93.6 bits (233), Expect = 7e-20
 Identities = 55/238 (23%), Positives = 90/238 (37%), Gaps = 34/238 (14%)

Query: 29  LLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNS 88
           L  L   S    N         LE LDLS N ++   +    +   G ++LK+LDLS N 
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS--FKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 89  FNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYR 148
              ++ S+  GL  L++L   ++ L+         SL NL  LD+S            + 
Sbjct: 385 V-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFN 442

Query: 149 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQEL 208
           GL  L  L ++G                          + F +          L +L  L
Sbjct: 443 GLSSLEVLKMAGNSF-----------------QENFLPDIFTE----------LRNLTFL 475

Query: 209 YIDHNDFIGSLPW-CLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQ 265
            +     +  L      +L+SL+VL++  NQL  ++       LTS++ + L  N + 
Sbjct: 476 DLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 531

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  169 bits (431), Expect = 6e-45
 Identities = 102/566 (18%), Positives = 186/566 (32%), Gaps = 88/566 (15%)

Query: 76  LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSD 135
            + +K LDLS N         L   ++L+ L L  +R+  +I  +   SL +LE LD+SD
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSD 83

Query: 136 NEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTT 195
           N + +L     +  L  L++L+L G   +          +  +L+TL + +      +  
Sbjct: 84  NHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVT-SLFPNLTNLQTLRIGNVETFSEI-R 140

Query: 196 TQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIE 255
                 L  L EL I            L ++  +  L +  ++    L       L+S+ 
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVR 199

Query: 256 LLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHG 315
            L L + +                        +            +   +  +   S   
Sbjct: 200 YLELRDTNL----------------------ARFQFSPLPVDEVSS-PMKKLAFRGSVLT 236

Query: 316 DSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPT 375
           D     + K L +   L                   ++ T         +       L  
Sbjct: 237 DESFNELLKLLRYILEL--------------SEVEFDDCTLNGLGDFNPSESDVVSELGK 282

Query: 376 RSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDL 435
                I  L I    L  +    +  +L  +  +T+  +       S    + SL +LDL
Sbjct: 283 VETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL 341

Query: 436 SNNQLTGEIPEHLAM--GCFNLEYLLLSNNSLQ-----GQLFSKKINLTKLKRLNLDGNH 488
           S N +  E  ++ A      +L+ L+LS N L+     G++      L  L  L++  N 
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL---TLKNLTSLDISRNT 398

Query: 489 FIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQL 548
               +P+S      ++ L +S   I   + T                          C  
Sbjct: 399 -FHPMPDSCQWPEKMRFLNLSSTGIR-VVKT--------------------------CIP 430

Query: 549 DYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANN 608
             LE+LD+S NN+    L         L  L +  N+L   +P+       L  + ++ N
Sbjct: 431 QTLEVLDVSNNNLDSFSLFL-----PRLQELYISRNKLK-TLPDASL-FPVLLVMKISRN 483

Query: 609 NFEGEVPLRLCQLQKLRLLDLSHNNF 634
             +        +L  L+ + L  N +
Sbjct: 484 QLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  159 bits (405), Expect = 1e-41
 Identities = 102/567 (17%), Positives = 185/567 (32%), Gaps = 93/567 (16%)

Query: 77  SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDN 136
                 D    SF  S+ S L   +++K+L L++N++   I   +L + +NL+ L +  +
Sbjct: 5   DASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSS 60

Query: 137 EIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTT 196
            I+ +     +  L  L  LDLS   +   S      G   SLK L L  N + +T+  T
Sbjct: 61  RINTIE-GDAFYSLGSLEHLDLSDNHLSSLSS--SWFGPLSSLKYLNLMGNPY-QTLGVT 116

Query: 197 QGLCELAHLQELYIDHNDFIGSLP-WCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIE 255
                L +LQ L I + +    +     A LTSL  L +    L     S  L  +  I 
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQSQSLKSIRDIH 175

Query: 256 LLILSNNHFQ--IPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSD 313
            L L  +     + +  +   +   L++      +            +   +  +   S 
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS-PMKKLAFRGSV 234

Query: 314 HGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRL 373
             D     + K L +   L  V   D  + G     L + N +   ++     +      
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNG-----LGDFNPSESDVVSELGKVE----- 284

Query: 374 PTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYL 433
                                           +  L I        + + +  +  +  +
Sbjct: 285 -----------------------------TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315

Query: 434 DLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKI---NLTKLKRLNLDGNHF- 489
            + N+++   +P   +    +LE+L LS N +  +             L+ L L  NH  
Sbjct: 316 TVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

Query: 490 -IGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQL 548
            +    E L    +L  L IS N                            P+P      
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTFH-------------------------PMPDSCQWP 409

Query: 549 DYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANN 608
           + +  L+LS   I              L  LD+ NN L+ +       L +L+ L ++ N
Sbjct: 410 EKMRFLNLSSTGIRVVK-TCIPQT---LEVLDVSNNNLD-SFSL---FLPRLQELYISRN 461

Query: 609 NFEGEVPLRLCQLQKLRLLDLSHNNFS 635
             +  +P        L ++ +S N   
Sbjct: 462 KLK-TLP-DASLFPVLLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  140 bits (354), Expect = 4e-35
 Identities = 87/489 (17%), Positives = 166/489 (33%), Gaps = 63/489 (12%)

Query: 40  LNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNN-SVLSSLA 98
           +    F     LE LDLS N++     +        LS+LK+L+L  N +    V S   
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHL----SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 99  GLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDL 158
            L++L+ L +        I   +   L++L  L++    + N    +  + +R +  L L
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY-QSQSLKSIRDIHHLTL 179

Query: 159 SGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAK------TVTTTQGLCELAHLQELYIDH 212
                    ++        S++ L L+  N A+       V       +    +   +  
Sbjct: 180 HLSESAFLLEIFAD--ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 213 NDF--IGSLPWCLANLTSLRVLHVPDNQLTE--NLSSSPLMHLTSIELLILSNNHF-QIP 267
             F  +  L   +  L+ +       N L +     S  +  L  +E + +   H  Q  
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

Query: 268 MSLEP---FFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPK 324
           +  +    +    K+K      +++F    S    L     L  + LS++          
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK---SLEFLDLSENL--------- 345

Query: 325 FLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLS--GPFRLPTRSRKNII 382
                       + +  ++    S       +L++++L+ N L           + KN+ 
Sbjct: 346 ------------MVEEYLK---NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390

Query: 383 ALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTG 442
           +LDIS N     +P         + FL +S       + +      +L  LD+SNN L  
Sbjct: 391 SLDISRNTFH-PMPDSCQW-PEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLD- 444

Query: 443 EIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSS 502
                L      L+ L +S N L+            L  + +  N             +S
Sbjct: 445 SFSLFL----PRLQELYISRNKLKT--LPDASLFPVLLVMKISRNQLKSVPDGIFDRLTS 498

Query: 503 LQGLYISDN 511
           LQ +++  N
Sbjct: 499 LQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  139 bits (351), Expect = 1e-34
 Identities = 92/561 (16%), Positives = 176/561 (31%), Gaps = 80/561 (14%)

Query: 202 LAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSN 261
            A ++ L +  N         L    +L+VL +  +++   +       L S+E L LS+
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSD 83

Query: 262 NHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGT 321
           NH    +S   F   S LK  +   N                    ++            
Sbjct: 84  NHLSS-LSSSWFGPLSSLKYLNLMGNPY-----------------QTLG----------- 114

Query: 322 IPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNI 381
           +     +  +L+ + I +V    E         T+L  + +   SL        +S ++I
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174

Query: 382 IALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLT 441
             L +  ++    +      +L ++ +L +          S          +     + +
Sbjct: 175 HHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233

Query: 442 GEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCS 501
             + +        L   +L  + ++         L  L   N   +  +  +        
Sbjct: 234 -VLTDESFNELLKLLRYILELSEVE----FDDCTLNGLGDFNPSESDVVSEL--GKVETV 286

Query: 502 SLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 561
           +++ L+I    +   + T    +  +  I + ++ +     S    L  LE LDLS+N +
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346

Query: 562 AGRPL--NGAFSKCSYLLTLDLCNNRLN--GNIPNWMGRLSQLRYLILANNNFEGEVPLR 617
               L  +        L TL L  N L         +  L  L  L ++ N F   +P  
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS 405

Query: 618 LCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGE 677
               +K+R L+LS       +  C+   +L               E   VS N       
Sbjct: 406 CQWPEKMRFLNLSSTGIR-VVKTCI-PQTL---------------EVLDVSNN------- 441

Query: 678 KETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGT 737
                      +       L  +  L +S NKL   +P        +  + +SRN L   
Sbjct: 442 -----------NLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSV 488

Query: 738 IPVTFSNLRQVESLDLSYNNL 758
               F  L  ++ + L  N  
Sbjct: 489 PDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  125 bits (315), Expect = 5e-30
 Identities = 68/407 (16%), Positives = 127/407 (31%), Gaps = 49/407 (12%)

Query: 384 LDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 443
            D         IP  +      +  L +SFN              +L  L L ++++   
Sbjct: 10  CDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-T 64

Query: 444 IPEHLAMGCFNLEYLLLSNNSLQ---GQLFSKKINLTKLKRLNLDGNHFIG-GIPESLSN 499
           I         +LE+L LS+N L       F     L+ LK LNL GN +   G+     N
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG---PLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 500 CSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKN 559
            ++LQ L I + +    I                          +F  L  L  L++   
Sbjct: 122 LTNLQTLRIGNVETFSEIR-----------------------RIDFAGLTSLNELEIKAL 158

Query: 560 NIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLC 619
           ++     + +      +  L L  +     +  +   LS +RYL L + N        L 
Sbjct: 159 SLRNYQ-SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP 217

Query: 620 QLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKE 679
             +    +          +     N  L       +L      E+D  + N         
Sbjct: 218 VDEVSSPMKKLAFR-GSVLTDESFNELLKLLRYILELSE---VEFDDCTLN------GLG 267

Query: 680 TIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIP 739
             + +  +           +I  L +    L  ++ +    L ++  + +  + +     
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC 327

Query: 740 VTFSNLRQVESLDLSYNNLTGKIPPRLVELNALA---VFTVAHNNLS 783
               +L+ +E LDLS N +  +         A        ++ N+L 
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  120 bits (302), Expect = 2e-28
 Identities = 74/458 (16%), Positives = 147/458 (32%), Gaps = 76/458 (16%)

Query: 347 PSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNL 406
               L    NL+ +IL ++ ++        S  ++  LD+S N L   +       L +L
Sbjct: 42  GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSL 100

Query: 407 GFLTISFNAFNG-SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSL 465
            +L +  N +    + S F ++ +L  L + N +   EI      G  +L  L +   SL
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160

Query: 466 QGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNIS 525
           +        ++  +  L L  +     +       SS++ L + D +++    + +    
Sbjct: 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220

Query: 526 FLDAIIMPDNHLEGPIPSEFC----------QLDYLEILDLSKNNIAGRPLN-------G 568
               +              F           +L  +E  D + N +     +        
Sbjct: 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280

Query: 569 AFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQ-LQKLRLL 627
              +   +  L +    L  ++      L +++ + + N+     VP    Q L+ L  L
Sbjct: 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFL 339

Query: 628 DLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKE 687
           DLS N                                             K +       
Sbjct: 340 DLSENLMV--------------------------------------EEYLKNSACKGA-- 359

Query: 688 RSYTYKGQPLESIHGLDLSCNKL--IGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNL 745
                      S+  L LS N L  + +    +  L  + +L++SRN     +P +    
Sbjct: 360 ---------WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409

Query: 746 RQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
            ++  L+LS   +   +   +     L V  V++NNL 
Sbjct: 410 EKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  105 bits (265), Expect = 7e-24
 Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 24/256 (9%)

Query: 14  SVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKL 73
            V+        + I  L +      Y   ++++  ++++ + +  + +            
Sbjct: 275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV----FLVPCSFS 330

Query: 74  SGLSNLKFLDLSHNSFNNSVL---SSLAGLSSLKNLSLAYNRLEG-SINIEELDSLSNLE 129
             L +L+FLDLS N      L   +      SL+ L L+ N L       E L +L NL 
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390

Query: 130 GLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 189
            LD+S N    +  P   +   K+RFL+LS   IR             +L+ L + +NN 
Sbjct: 391 SLDISRNTFHPM--PDSCQWPEKMRFLNLSSTGIRVVKT-----CIPQTLEVLDVSNNNL 443

Query: 190 AKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLM 249
                       L  LQELYI  N  + +LP   +    L V+ +  NQL  ++      
Sbjct: 444 DSFSL------FLPRLQELYISRN-KLKTLPDA-SLFPVLLVMKISRNQLK-SVPDGIFD 494

Query: 250 HLTSIELLILSNNHFQ 265
            LTS++ + L  N + 
Sbjct: 495 RLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 86.7 bits (215), Expect = 8e-18
 Identities = 53/314 (16%), Positives = 113/314 (35%), Gaps = 59/314 (18%)

Query: 30  LSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEG-------------------- 69
           L+L+++ + +L          +  L+L   N+A    +                      
Sbjct: 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236

Query: 70  ----------LEKLSGLSNLKFLDLSHN---SFNNSVLSSLAGLSSLKNLSLAYNRLEG- 115
                     L  +  LS ++F D + N    FN S    ++ L  ++ +++    +   
Sbjct: 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296

Query: 116 ---SINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHS 172
                       L  ++ + + ++++  +      + L+ L FLDLS   + +      +
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVENSKVFLV-PCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355

Query: 173 -IGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRV 231
             G++PSL+TL L  N+      T + L  L +L  L I  N     +P        +R 
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRF 414

Query: 232 LHVPDNQLTE------------NLSSSPL----MHLTSIELLILSNNHFQIPMSLEPFFN 275
           L++    +              ++S++ L    + L  ++ L +S N  +   +L     
Sbjct: 415 LNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK---TLPDASL 471

Query: 276 YSKLKIFHGRENQI 289
           +  L +     NQ+
Sbjct: 472 FPVLLVMKISRNQL 485

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  163 bits (415), Expect = 2e-43
 Identities = 104/514 (20%), Positives = 195/514 (37%), Gaps = 78/514 (15%)

Query: 29  LLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNS 88
            +   +      +    T   Q+ +L      I      + ++ +  L+NL  ++ S+N 
Sbjct: 26  KMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGI------KSIDGVEYLNNLTQINFSNNQ 79

Query: 89  FNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYR 148
             +  ++ L  L+ L ++ +  N++    +I  L +L+NL GL + +N+I ++      +
Sbjct: 80  LTD--ITPLKNLTKLVDILMNNNQIA---DITPLANLTNLTGLTLFNNQITDI---DPLK 131

Query: 149 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQEL 208
            L  L  L+LS   I D    + ++    SL+ L    N     VT  + L  L  L+ L
Sbjct: 132 NLTNLNRLELSSNTISD----ISALSGLTSLQQLSF-GNQ----VTDLKPLANLTTLERL 182

Query: 209 YIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPM 268
            I  N  +  +   LA LT+L  L   +NQ++     +PL  LT+++ L L+ N  +   
Sbjct: 183 DISSNK-VSDIS-VLAKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLK--- 234

Query: 269 SLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYH 328
            +    + + L       NQI     S+ + L+   +LT + L  +              
Sbjct: 235 DIGTLASLTNLTDLDLANNQI-----SNLAPLSGLTKLTELKLGANQ------------- 276

Query: 329 QHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISY 388
                   IS+++         L   T L ++ L  N L      P  + KN+  L + +
Sbjct: 277 --------ISNISP--------LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYF 318

Query: 389 NKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHL 448
           N +    PV     L  L  L    N  +    SS  ++ ++ +L   +NQ++   P   
Sbjct: 319 NNISDISPVS---SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA- 372

Query: 449 AMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYI 508
                 +  L L++ +      + K N++    +       I   P ++S+  S     I
Sbjct: 373 --NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDI 428

Query: 509 SDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIP 542
           + N  S          S    I        G + 
Sbjct: 429 TWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  162 bits (413), Expect = 3e-43
 Identities = 106/539 (19%), Positives = 183/539 (33%), Gaps = 106/539 (19%)

Query: 29  LLSLNIASALYLN-FSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHN 87
           L S  I     +N     T   +     L   N+            + L  +  L     
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNV------TDTVSQTDLDQVTTLQADRL 56

Query: 88  SFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDY 147
              +  +  +  L++L  ++ + N+L    +I  L +L+ L  + M++N+I ++      
Sbjct: 57  GIKS--IDGVEYLNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIADI---TPL 108

Query: 148 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQE 207
             L  L  L L   +I D    +  + +  +L  L L SN     ++    L  L  LQ+
Sbjct: 109 ANLTNLTGLTLFNNQITD----IDPLKNLTNLNRLELSSNT----ISDISALSGLTSLQQ 160

Query: 208 LYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIP 267
           L   +       P  LANLT+L  L +  N+++     S L  LT++E LI +NN     
Sbjct: 161 LSFGNQ-VTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQIS-- 212

Query: 268 MSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLY 327
             + P    + L       N                 QL  I                  
Sbjct: 213 -DITPLGILTNLDELSLNGN-----------------QLKDIGT---------------- 238

Query: 328 HQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDIS 387
                                  L + TNL  + LANN +S     P      +  L + 
Sbjct: 239 -----------------------LASLTNLTDLDLANNQISNL--APLSGLTKLTELKLG 273

Query: 388 YNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIP-E 446
            N++    P+     L  L  L ++ N      P    ++ +L YL L  N ++   P  
Sbjct: 274 ANQISNISPLAG---LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS 328

Query: 447 HLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGL 506
            L      L+ L   NN +     S   NLT +  L+   N  I  +   L+N + +  L
Sbjct: 329 SLT----KLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQL 380

Query: 507 YISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRP 565
            ++D   + +   +  N+S  + +      L    P+           D++ N  +   
Sbjct: 381 GLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSYTN 437

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  153 bits (389), Expect = 5e-40
 Identities = 102/532 (19%), Positives = 179/532 (33%), Gaps = 79/532 (14%)

Query: 84  LSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVV 143
                 N   + +   L+      L    +  +++  +   L  +  L      I ++  
Sbjct: 9   TQDTPINQ--IFTDTALAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGIKSI-- 61

Query: 144 PKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELA 203
                 L  L  ++ S  ++ D    +  + +   L  + + +N           L  L 
Sbjct: 62  -DGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQI----ADITPLANLT 112

Query: 204 HLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNH 263
           +L  L + +N      P  L NLT+L  L +  N ++     S L  LTS++ L   N  
Sbjct: 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS---DISALSGLTSLQQLSFGNQV 167

Query: 264 FQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIP 323
             +    +P  N + L+      N++        S ++   +LT+               
Sbjct: 168 TDL----KPLANLTTLERLDISSNKV--------SDISVLAKLTN--------------- 200

Query: 324 KFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIA 383
                   LE +I ++  +    P   L   TNL  + L  N L         S  N+  
Sbjct: 201 --------LESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTD 247

Query: 384 LDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 443
           LD++ N++    P+     L  L  L +  N  +   P     + +L  L+L+ NQL   
Sbjct: 248 LDLANNQISNLAPLS---GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 302

Query: 444 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSL 503
            P        NL YL L  N++         +LTKL+RL    N        SL+N +++
Sbjct: 303 SP---ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD--VSSLANLTNI 355

Query: 504 QGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG 563
             L    N IS   P  + N++ +  + + D        +       + I +  KN    
Sbjct: 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN---VSIPNTVKNVTGA 410

Query: 564 RPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVP 615
                  S        D+  N  +          SQ   +      F G V 
Sbjct: 411 LIAPATISDGGSYTEPDITWNLPSYT-NEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  149 bits (378), Expect = 1e-38
 Identities = 95/485 (19%), Positives = 167/485 (34%), Gaps = 74/485 (15%)

Query: 149 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQEL 208
            L +     L    + D      S      + TL          + +  G+  L +L ++
Sbjct: 22  ALAEKMKTVLGKTNVTD----TVSQTDLDQVTTLQADRLG----IKSIDGVEYLNNLTQI 73

Query: 209 YIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPM 268
              +N      P  L NLT L  + + +NQ+      +PL +LT++  L L NN      
Sbjct: 74  NFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGLTLFNNQIT--- 125

Query: 269 SLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYH 328
            ++P  N + L       N I     S  S+L+    L  +S  +               
Sbjct: 126 DIDPLKNLTNLNRLELSSNTI-----SDISALSGLTSLQQLSFGN--------------- 165

Query: 329 QHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISY 388
                        +    P   L N T L  + +++N +S    L      N+ +L  + 
Sbjct: 166 ------------QVTDLKP---LANLTTLERLDISSNKVSDISVLA--KLTNLESLIATN 208

Query: 389 NKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHL 448
           N++    P+    +L NL  L+++ N        +   + +L  LDL+NNQ++   P   
Sbjct: 209 NQISDITPLG---ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS- 262

Query: 449 AMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYI 508
             G   L  L L  N +     S    LT L  L L+ N         +SN  +L  L +
Sbjct: 263 --GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTL 316

Query: 509 SDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNG 568
             N+IS   P  + +++ L  +   +N +     S    L  +  L    N I+      
Sbjct: 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLT--- 369

Query: 569 AFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLD 628
             +  + +  L L +        N+   +S    +           P  +         D
Sbjct: 370 PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPD 427

Query: 629 LSHNN 633
           ++ N 
Sbjct: 428 ITWNL 432

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  138 bits (350), Expect = 6e-35
 Identities = 96/470 (20%), Positives = 170/470 (36%), Gaps = 71/470 (15%)

Query: 178 SLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDN 237
            L +  +  +     +        LA   +  +   +   ++     +L  +  L     
Sbjct: 2   PLGSATITQDT---PINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL 56

Query: 238 QLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSH 297
            +    S   + +L ++  +  SNN       + P  N +KL       NQI     +  
Sbjct: 57  GIK---SIDGVEYLNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQI-----ADI 105

Query: 298 SSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNL 357
           + L     LT ++L ++                      I+D++         L+N TNL
Sbjct: 106 TPLANLTNLTGLTLFNNQ---------------------ITDIDP--------LKNLTNL 136

Query: 358 RSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFN 417
             + L++N++S    L      ++  L    N++    P+     L  L  L IS N   
Sbjct: 137 NRLELSSNTISDISAL--SGLTSLQQLSFG-NQVTDLKPLA---NLTTLERLDISSNKV- 189

Query: 418 GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLT 477
            S  S    + +L  L  +NNQ++   P        NL+ L L+ N L+        +LT
Sbjct: 190 -SDISVLAKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGNQLKD--IGTLASLT 243

Query: 478 KLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHL 537
            L  L+L  N         LS  + L  L +  N IS   P  +  ++ L  + + +N L
Sbjct: 244 NLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 299

Query: 538 EGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRL 597
           E   P     L  L  L L  NNI+        S  + L  L   NN+++    + +  L
Sbjct: 300 EDISP--ISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFYNNKVSD--VSSLANL 352

Query: 598 SQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSL 647
           + + +L   +N      PL    L ++  L L+   ++        N S+
Sbjct: 353 TNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPVNYKANVSI 400

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  127 bits (320), Expect = 4e-31
 Identities = 90/439 (20%), Positives = 151/439 (34%), Gaps = 66/439 (15%)

Query: 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLT 410
                     +L   +++    +       +  L      ++      +   L NL  + 
Sbjct: 20  DTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIK--SIDGVEY-LNNLTQIN 74

Query: 411 ISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIP-EHLAMGCFNLEYLLLSNNSLQGQL 469
            S N      P    ++  L+ + ++NNQ+    P  +L     NL  L L NN +    
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT----NLTGLTLFNNQITD-- 126

Query: 470 FSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDA 529
                NLT L RL L  N        +LS  +SLQ L    N ++   P  + N++ L+ 
Sbjct: 127 IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLER 181

Query: 530 IIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGN 589
           + +  N +     S   +L  LE L  + N I+           + L  L L  N+L  +
Sbjct: 182 LDISSNKVSDI--SVLAKLTNLESLIATNNQISDIT---PLGILTNLDELSLNGNQLK-D 235

Query: 590 IPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHR 649
           I   +  L+ L  L LANN      PL    L KL  L L  N  S  I P    T+L  
Sbjct: 236 IGT-LASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISN-ISPLAGLTAL-- 289

Query: 650 EEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNK 709
                            ++ N      + E I   +           L+++  L L  N 
Sbjct: 290 -------------TNLELNEN------QLEDISPISN----------LKNLTYLTLYFNN 320

Query: 710 LIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVEL 769
           +    P  +  L ++  L    N ++     + +NL  +  L   +N ++   P  L  L
Sbjct: 321 ISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANL 374

Query: 770 NALAVFTVAHNNLSGKIPE 788
             +    +     +     
Sbjct: 375 TRITQLGLNDQAWTNAPVN 393

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  126 bits (318), Expect = 7e-31
 Identities = 98/457 (21%), Positives = 166/457 (36%), Gaps = 65/457 (14%)

Query: 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLT 410
           +E   NL  I  +NN L+     P ++   ++ + ++ N++    P+     L NL  LT
Sbjct: 64  VEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITPL---ANLTNLTGLT 118

Query: 411 ISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLF 470
           +  N      P    ++ +L  L+LS+N ++      L+ G  +L+ L   N     +  
Sbjct: 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALS-GLTSLQQLSFGNQVTDLKPL 173

Query: 471 SKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAI 530
           +   NLT L+RL++  N         L+  ++L+ L  ++N IS   P  +G ++ LD +
Sbjct: 174 A---NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226

Query: 531 IMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNI 590
            +  N L+         L  L  LDL+ N I+        S  + L  L L  N+++   
Sbjct: 227 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNIS 281

Query: 591 PNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHRE 650
           P  +  L+ L  L L  N  E   P+    L+ L  L L  NN S  I P    T L   
Sbjct: 282 P--LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISD-ISPVSSLTKL--- 333

Query: 651 EGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKL 710
                       +      N      +   +               L +I+ L    N++
Sbjct: 334 ------------QRLFFYNN------KVSDVSSLAN----------LTNINWLSAGHNQI 365

Query: 711 IGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPP-RLVEL 769
               P  +  L RI  L L+    T       +N+      +   N     I P  + + 
Sbjct: 366 SDLTP--LANLTRITQLGLNDQAWTNAPVNYKANV---SIPNTVKNVTGALIAPATISDG 420

Query: 770 NALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPF 806
            +     +  N  S    E    F+           F
Sbjct: 421 GSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTF 456

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  111 bits (280), Expect = 5e-26
 Identities = 83/426 (19%), Positives = 138/426 (32%), Gaps = 86/426 (20%)

Query: 359 SIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNG 418
           + I  +  ++  F     +    +   +    +   +       L  +  L         
Sbjct: 6   ATITQDTPINQIFTDT--ALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRL--GI 58

Query: 419 SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTK 478
                   +N+L  ++ SNNQLT   P  L      L  +L++NN +     +   NLT 
Sbjct: 59  KSIDGVEYLNNLTQINFSNNQLTDITP--LK-NLTKLVDILMNNNQIAD--ITPLANLTN 113

Query: 479 LKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLE 538
           L  L L  N       + L N ++L  L +S N IS                        
Sbjct: 114 LTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD----------------------- 148

Query: 539 GPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLS 598
               S    L  L+ L    N +         +  + L  LD+ +N+++ +I   + +L+
Sbjct: 149 ---ISALSGLTSLQQLSFG-NQVTDLK---PLANLTTLERLDISSNKVS-DISV-LAKLT 199

Query: 599 QLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIP 658
            L  LI  NN      PL    L  L  L L+ N     I      T+L   +   + I 
Sbjct: 200 NLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQI- 255

Query: 659 TYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRI 718
                                    +            L  +  L L  N++    P  +
Sbjct: 256 -------------------SNLAPLSG-----------LTKLTELKLGANQISNISP--L 283

Query: 719 GELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA 778
             L  +  L L+ N L    P   SNL+ +  L L +NN++   P  +  L  L      
Sbjct: 284 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339

Query: 779 HNNLSG 784
           +N +S 
Sbjct: 340 NNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  108 bits (271), Expect = 7e-25
 Identities = 71/366 (19%), Positives = 132/366 (36%), Gaps = 57/366 (15%)

Query: 422 SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKR 481
            +   +   +   L    +T  + +        +  L      ++         L  L +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKS--IDGVEYLNNLTQ 72

Query: 482 LNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPI 541
           +N   N  +  I   L N + L  + +++N I+   P  + N++ L  + + +N +    
Sbjct: 73  INFSNNQ-LTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128

Query: 542 PSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLR 601
           P     L  L  L+LS N I+      A S  + L  L   N  +    P  +  L+ L 
Sbjct: 129 P--LKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLE 180

Query: 602 YLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYR 661
            L +++N       L   +L  L  L  ++N  S  I P    T+L              
Sbjct: 181 RLDISSNKVSDISVL--AKLTNLESLIATNNQISD-ITPLGILTNL-------------- 223

Query: 662 NEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGEL 721
            +   ++ N      + + I               L ++  LDL+ N++    P  +  L
Sbjct: 224 -DELSLNGN------QLKDIGTLAS----------LTNLTDLDLANNQISNLAP--LSGL 264

Query: 722 IRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNN 781
            ++  L L  N ++   P   + L  + +L+L+ N L    P  +  L  L   T+  NN
Sbjct: 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320

Query: 782 LSGKIP 787
           +S   P
Sbjct: 321 ISDISP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 87.3 bits (217), Expect = 4e-18
 Identities = 61/330 (18%), Positives = 112/330 (33%), Gaps = 54/330 (16%)

Query: 458 LLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSI 517
            +  +  +  Q+F+    L +  +  L   +       S ++   +  L      I    
Sbjct: 7   TITQDTPIN-QIFTDT-ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK--S 60

Query: 518 PTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLL 577
              +  ++ L  I   +N L    P     L  L  + ++ N IA        +  + L 
Sbjct: 61  IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT---PLANLTNLT 115

Query: 578 TLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQ 637
            L L NN++    P  +  L+ L  L L++N       L    L  L+ L   +      
Sbjct: 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL--SGLTSLQQLSFGNQVTD-- 169

Query: 638 IPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPL 697
           + P  + T+L R +   + +                       I    K          L
Sbjct: 170 LKPLANLTTLERLDISSNKV---------------------SDISVLAK----------L 198

Query: 698 ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNN 757
            ++  L  + N++    P  +G L  +  L+L+ N L      T ++L  +  LDL+ N 
Sbjct: 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQ 254

Query: 758 LTGKIPPRLVELNALAVFTVAHNNLSGKIP 787
           ++   P  L  L  L    +  N +S   P
Sbjct: 255 ISNLAP--LSGLTKLTELKLGANQISNISP 282

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.4 bits (173), Expect = 1e-12
 Identities = 49/306 (16%), Positives = 97/306 (31%), Gaps = 73/306 (23%)

Query: 479 LKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLE 538
           L    +  +  I  I  + +  +      +   +++ ++                     
Sbjct: 3   LGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS-------------------- 41

Query: 539 GPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLS 598
                    LD +  L   +  I            + L  ++  NN+L    P  +  L+
Sbjct: 42  ------QTDLDQVTTLQADRLGIKSID---GVEYLNNLTQINFSNNQLTDITP--LKNLT 90

Query: 599 QLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIP 658
           +L  +++ NN      PL    L  L  L L +N  +  I P  + T+L           
Sbjct: 91  KLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQITD-IDPLKNLTNL----------- 136

Query: 659 TYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRI 718
                   +S N   ++ +   +               L S+  L    N++    P  +
Sbjct: 137 ----NRLELSSN---TISDISALSG-------------LTSLQQLSFG-NQVTDLKP--L 173

Query: 719 GELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA 778
             L  +  L++S N ++       + L  +ESL  + N ++   P  L  L  L   ++ 
Sbjct: 174 ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLN 229

Query: 779 HNNLSG 784
            N L  
Sbjct: 230 GNQLKD 235

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  145 bits (368), Expect = 3e-38
 Identities = 77/391 (19%), Positives = 162/391 (41%), Gaps = 46/391 (11%)

Query: 51  LESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAY 110
             +L      I        +   + L+      L   S  +  + +   L S+  L +A 
Sbjct: 2   AATLATLPAPI------NQIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAG 53

Query: 111 NRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVL 170
            ++    +I+ ++ L+NLE L+++ N+I ++        L KL  L +   +I D    +
Sbjct: 54  EKVA---SIQGIEYLTNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTNKITD----I 103

Query: 171 HSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLR 230
            ++ +  +L+ LYL  +N    ++    L  L  +  L +  N  +  L   L+N+T L 
Sbjct: 104 SALQNLTNLRELYLNEDN----ISDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLN 158

Query: 231 VLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIF 290
            L V ++++      +P+ +LT +  L L+ N  +    + P  + + L  F    NQI 
Sbjct: 159 YLTVTESKVK---DVTPIANLTDLYSLSLNYNQIE---DISPLASLTSLHYFTAYVNQI- 211

Query: 291 GEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWL 350
               +  + +    +L S+ + ++  +D       L +   L ++ I   N   +  +  
Sbjct: 212 ----TDITPVANMTRLNSLKIGNNKITD----LSPLANLSQLTWLEIGT-NQISDINA-- 260

Query: 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLT 410
           +++ T L+ + + +N +S    L   +   + +L ++ N+L       IG  L NL  L 
Sbjct: 261 VKDLTKLKMLNVGSNQISDISVL--NNLSQLNSLFLNNNQLGNEDMEVIGG-LTNLTTLF 317

Query: 411 ISFNAFNGSIPSSFGDMNSLIYLDLSNNQLT 441
           +S N      P     ++ +   D +N  + 
Sbjct: 318 LSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (349), Expect = 8e-36
 Identities = 90/436 (20%), Positives = 157/436 (36%), Gaps = 91/436 (20%)

Query: 79  LKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEI 138
              L       N   +   A L+      L    +   +  EE   L ++  L ++  ++
Sbjct: 2   AATLATLPAPINQ--IFPDADLAEGIRAVLQKASVTDVVTQEE---LESITKLVVAGEKV 56

Query: 139 DNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQG 198
            ++   +    L  L +L+L+G +I D    +  + +   L  LY+ +N     +T    
Sbjct: 57  ASI---QGIEYLTNLEYLNLNGNQITD----ISPLSNLVKLTNLYIGTNK----ITDISA 105

Query: 199 LCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLI 258
           L  L +L+ELY++ ++ I  +   LANLT +  L++  N    +L  SPL ++T +  L 
Sbjct: 106 LQNLTNLRELYLNEDN-ISDIS-PLANLTKMYSLNLGANHNLSDL--SPLSNMTGLNYLT 161

Query: 259 LSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSD 318
           ++ +  +    + P  N + L       NQI        S L     L   +   +    
Sbjct: 162 VTESKVK---DVTPIANLTDLYSLSLNYNQI-----EDISPLASLTSLHYFTAYVNQ--- 210

Query: 319 GGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSR 378
                             I+D+          + N T L S                   
Sbjct: 211 ------------------ITDITP--------VANMTRLNS------------------- 225

Query: 379 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNN 438
                L I  NK+    P+     L  L +L I  N  +    ++  D+  L  L++ +N
Sbjct: 226 -----LKIGNNKITDLSPLAN---LSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSN 275

Query: 439 QLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLS 498
           Q++      L      L  L L+NN L  +       LT L  L L  NH I  I   L+
Sbjct: 276 QISD--ISVLN-NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LA 330

Query: 499 NCSSLQGLYISDNDIS 514
           + S +     ++  I 
Sbjct: 331 SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  130 bits (330), Expect = 3e-33
 Identities = 82/432 (18%), Positives = 149/432 (34%), Gaps = 88/432 (20%)

Query: 205 LQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHF 264
              L       I  +    A+L       +    +T+         L SI  L+++    
Sbjct: 2   AATLATLPAP-INQIFP-DADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKV 56

Query: 265 QIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPK 324
               S++     + L+  +   NQI     +  S L+   +LT++ +  +          
Sbjct: 57  A---SIQGIEYLTNLEYLNLNGNQI-----TDISPLSNLVKLTNLYIGTNK--------- 99

Query: 325 FLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIAL 384
                       I+D++         L+N TNLR + L  +++S     P  +   + +L
Sbjct: 100 ------------ITDISA--------LQNLTNLRELYLNEDNISDI--SPLANLTKMYSL 137

Query: 385 DISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEI 444
           ++  N     +   +   +  L +LT++ +      P    ++  L  L L+ NQ+    
Sbjct: 138 NLGANHNLSDLS-PLSN-MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS 193

Query: 445 P-EHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSL 503
           P   L     +L Y     N +     +   N+T+L  L +  N         L+N S L
Sbjct: 194 PLASLT----SLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITD--LSPLANLSQL 245

Query: 504 QGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG 563
             L I  N IS                            +    L  L++L++  N I+ 
Sbjct: 246 TWLEIGTNQISD--------------------------INAVKDLTKLKMLNVGSNQISD 279

Query: 564 RPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQK 623
                  +  S L +L L NN+L       +G L+ L  L L+ N+     PL    L K
Sbjct: 280 IS---VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL--ASLSK 334

Query: 624 LRLLDLSHNNFS 635
           +   D ++    
Sbjct: 335 MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  127 bits (322), Expect = 3e-32
 Identities = 70/400 (17%), Positives = 147/400 (36%), Gaps = 58/400 (14%)

Query: 384 LDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 443
           L      +    P      L       +   +    +     ++ S+  L ++  ++   
Sbjct: 5   LATLPAPINQIFPDA---DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS- 58

Query: 444 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSL 503
             + +     NLEYL L+ N +     S   NL KL  L +  N        +L N ++L
Sbjct: 59  -IQGIE-YLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNL 112

Query: 504 QGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG 563
           + LY+++++IS   P  + N++ + ++ +  NH      S    +  L  L ++++ +  
Sbjct: 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKD 169

Query: 564 RPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQK 623
                  +  + L +L L  N++    P  +  L+ L Y     N      P+    + +
Sbjct: 170 VT---PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPV--ANMTR 222

Query: 624 LRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDF 683
           L  L + +N  +  + P  + + L                +  +  N      +   I+ 
Sbjct: 223 LNSLKIGNNKITD-LSPLANLSQL---------------TWLEIGTN------QISDINA 260

Query: 684 TTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFS 743
                        L  +  L++  N+ I +I   +  L ++++L L+ N L         
Sbjct: 261 VKD----------LTKLKMLNVGSNQ-ISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 744 NLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
            L  + +L LS N++T   P  L  L+ +     A+  + 
Sbjct: 309 GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  126 bits (318), Expect = 1e-31
 Identities = 73/364 (20%), Positives = 148/364 (40%), Gaps = 41/364 (11%)

Query: 29  LLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNS 88
            +   +  A   +       + +  L ++G  +        ++ +  L+NL++L+L+ N 
Sbjct: 24  GIRAVLQKASVTDVVTQEELESITKLVVAGEKV------ASIQGIEYLTNLEYLNLNGNQ 77

Query: 89  FNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYR 148
             +  +S L+ L  L NL +  N++    +I  L +L+NL  L ++++ I ++       
Sbjct: 78  ITD--ISPLSNLVKLTNLYIGTNKIT---DISALQNLTNLRELYLNEDNISDI---SPLA 129

Query: 149 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQEL 208
            L K+  L+L           L  + +   L  L +  +     V     +  L  L  L
Sbjct: 130 NLTKMYSLNLGANHN---LSDLSPLSNMTGLNYLTVTESK----VKDVTPIANLTDLYSL 182

Query: 209 YIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPM 268
            +++N      P  LA+LTSL       NQ+T     +P+ ++T +  L + NN      
Sbjct: 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQIT---DITPVANMTRLNSLKIGNNKIT--- 234

Query: 269 SLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYH 328
            L P  N S+L       NQI     S  +++    +L  +++  +  SD       L +
Sbjct: 235 DLSPLANLSQLTWLEIGTNQI-----SDINAVKDLTKLKMLNVGSNQISD----ISVLNN 285

Query: 329 QHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISY 388
              L  + +++  +  E     +   TNL ++ L+ N ++     P  S   + + D + 
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFLSQNHITDI--RPLASLSKMDSADFAN 342

Query: 389 NKLQ 392
             ++
Sbjct: 343 QVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  103 bits (259), Expect = 5e-24
 Identities = 40/197 (20%), Positives = 86/197 (43%), Gaps = 22/197 (11%)

Query: 45  FTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLK 104
                 L SL L+ N I      E +  L+ L++L +     N   +  ++ +A ++ L 
Sbjct: 173 IANLTDLYSLSLNYNQI------EDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLN 224

Query: 105 NLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIR 164
           +L +  N++    ++  L +LS L  L++  N+I ++      + L KL+ L++   +I 
Sbjct: 225 SLKIGNNKIT---DLSPLANLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQIS 278

Query: 165 DGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLA 224
           D    +  + +   L +L+L +N         + +  L +L  L++  N      P  LA
Sbjct: 279 D----ISVLNNLSQLNSLFLNNNQL--GNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330

Query: 225 NLTSLRVLHVPDNQLTE 241
           +L+ +      +  + +
Sbjct: 331 SLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 94.5 bits (236), Expect = 5e-21
 Identities = 54/310 (17%), Positives = 109/310 (35%), Gaps = 50/310 (16%)

Query: 475 NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPD 534
           +L +  R  L           +     S+  L ++   ++ SI   +  ++ L+ + +  
Sbjct: 20  DLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNG 75

Query: 535 NHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWM 594
           N +    P     L  L  L +  N I       A    + L  L L  + ++   P  +
Sbjct: 76  NQITDISP--LSNLVKLTNLYIGTNKITDIS---ALQNLTNLRELYLNEDNISDISP--L 128

Query: 595 GRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYY 654
             L+++  L L  N+   ++   L  +  L  L ++ +     + P  + T L+     Y
Sbjct: 129 ANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-VTPIANLTDLYSLSLNY 186

Query: 655 DLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEI 714
           + I                     E I               L S+H      N++    
Sbjct: 187 NQI---------------------EDISPLAS----------LTSLHYFTAYVNQITDIT 215

Query: 715 PSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAV 774
           P  +  + R+++L +  N +T   P   +NL Q+  L++  N ++      + +L  L +
Sbjct: 216 P--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKM 269

Query: 775 FTVAHNNLSG 784
             V  N +S 
Sbjct: 270 LNVGSNQISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.4 bits (176), Expect = 2e-13
 Identities = 45/241 (18%), Positives = 80/241 (33%), Gaps = 44/241 (18%)

Query: 547 QLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILA 606
            L       L K ++          +   +  L +   ++  +I   +  L+ L YL L 
Sbjct: 20  DLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLN 74

Query: 607 NNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDI 666
            N      PL    L KL  L +  N  +  I    + T+L       D I         
Sbjct: 75  GNQITDISPL--SNLVKLTNLYIGTNKIT-DISALQNLTNLRELYLNEDNI--------- 122

Query: 667 VSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHT 726
                         I               L  ++ L+L  N  + ++   +  +  ++ 
Sbjct: 123 ------------SDISPLAN----------LTKMYSLNLGANHNLSDLSP-LSNMTGLNY 159

Query: 727 LNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKI 786
           L ++ + +    P   +NL  + SL L+YN +    P  L  L +L  FT   N ++   
Sbjct: 160 LTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT 215

Query: 787 P 787
           P
Sbjct: 216 P 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.8 bits (138), Expect = 1e-08
 Identities = 35/212 (16%), Positives = 70/212 (33%), Gaps = 41/212 (19%)

Query: 576 LLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635
             TL      +N   P+    L++    +L   +    V     +L+ +  L ++    +
Sbjct: 2   AATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA 57

Query: 636 GQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQ 695
             I      T+L                               E ++    + +      
Sbjct: 58  -SIQGIEYLTNL-------------------------------EYLNLNGNQITDISPLS 85

Query: 696 PLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSY 755
            L  +  L +  NK+     S +  L  +  L L+ +N++   P   +NL ++ SL+L  
Sbjct: 86  NLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGA 141

Query: 756 NNLTGKIPPRLVELNALAVFTVAHNNLSGKIP 787
           N+    + P L  +  L   TV  + +    P
Sbjct: 142 NHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP 172

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  136 bits (343), Expect = 6e-34
 Identities = 58/377 (15%), Positives = 120/377 (31%), Gaps = 19/377 (5%)

Query: 384 LDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 443
             ++ + L+      + +   N+  L +S N  +    +       L  L+LS+N L  E
Sbjct: 15  EKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-E 72

Query: 444 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSL 503
             +  ++    L  L L+NN +Q +L         ++ L+   N+ I  +  S       
Sbjct: 73  TLDLESLS--TLRTLDLNNNYVQ-ELL----VGPSIETLHAANNN-ISRVSCS--RGQGK 122

Query: 504 QGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEG-PIPSEFCQLDYLEILDLSKNNIA 562
           + +Y+++N I+       G  S +  + +  N ++           D LE L+L  N I 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 563 GRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQ 622
                      + L TLDL +N+L   +       + + ++ L NN     +   L   Q
Sbjct: 183 DVK---GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237

Query: 623 KLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETID 682
            L   DL  N F         + +   +      +     + +                +
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

Query: 683 FTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTF 742
                 +        +    L    ++    +        R   ++  +      I    
Sbjct: 298 DLPAPFADRLIALKRKEHALLSGQGSE-TERLECERENQARQREIDALKEQYRTVIDQVT 356

Query: 743 SNLRQVESLDLSYNNLT 759
              +   +L+     L 
Sbjct: 357 LRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  131 bits (331), Expect = 2e-32
 Identities = 66/437 (15%), Positives = 142/437 (32%), Gaps = 36/437 (8%)

Query: 76  LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSD 135
            +  K   ++ +S   ++ S      ++K L L+ N L   I+  +L   + LE L++S 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 136 NEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTT 195
           N +       D   L  LR LDL+   ++        +   PS++TL+  +NN ++   +
Sbjct: 68  NVLYET---LDLESLSTLRTLDLNNNYVQ-------ELLVGPSIETLHAANNNISRVSCS 117

Query: 196 TQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIE 255
                     + +Y+ +N             + ++ L +  N++     +       ++E
Sbjct: 118 R-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 256 LLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHG 315
            L L  N       ++    ++KLK      N++   +     S      +T ISL ++ 
Sbjct: 173 HLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAA---GVTWISLRNNK 225

Query: 316 DSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPT 375
                 I K L    +LE   +                N  +++  +A  ++        
Sbjct: 226 LV---LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT--VAKQTVKKLTGQNE 280

Query: 376 RSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGS----IPSSFGDMNSLI 431
                           +  +P      L  L     +  +  GS    +     +     
Sbjct: 281 EECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQR 339

Query: 432 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNH--F 489
            +D    Q    + + + +       L     +L  Q+ + +    +L            
Sbjct: 340 EIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398

Query: 490 IGGIPESLSNCSSLQGL 506
           +    E  S    L+ +
Sbjct: 399 LQHATEEQSPLQLLRAI 415

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  119 bits (300), Expect = 1e-28
 Identities = 69/441 (15%), Positives = 137/441 (31%), Gaps = 31/441 (7%)

Query: 40  LNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAG 99
           ++ +   PF +LE L+LS N +           L  LS L+ LDL++N      +  L  
Sbjct: 49  ISAADLAPFTKLELLNLSSNVL------YETLDLESLSTLRTLDLNNNY-----VQELLV 97

Query: 100 LSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLS 159
             S++ L  A N +               + + +++N+I  L    D     ++++LDL 
Sbjct: 98  GPSIETLHAANNNISRV----SCSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLK 152

Query: 160 GLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSL 219
              I   +       S  +L+ L L+ N         +G    A L+ L +  N  +  +
Sbjct: 153 LNEIDTVNF-AELAASSDTLEHLNLQYNFI----YDVKGQVVFAKLKTLDLSSNK-LAFM 206

Query: 220 PWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKL 279
                +   +  + + +N+L   +  + L    ++E   L  N F      + F    ++
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264

Query: 280 KIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISD 339
           +    +  +          ++       +    D            L      E  ++S 
Sbjct: 265 QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP----FADRLIALKRKEHALLSG 320

Query: 340 VNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEI 399
                E      EN    R I              T  ++  I L+     L        
Sbjct: 321 QGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD-EQVSNG 379

Query: 400 GKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLL 459
            +    L             +  +  + + L  L     +      E  ++    +    
Sbjct: 380 RRAHAELDGTLQQAVG-QIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWD 438

Query: 460 LSNNSLQGQLFSKKINLTKLK 480
           +  +    QL  +   L KL 
Sbjct: 439 MYQHKET-QLAEENARLKKLN 458

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  118 bits (297), Expect = 4e-28
 Identities = 62/422 (14%), Positives = 123/422 (29%), Gaps = 77/422 (18%)

Query: 218 SLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYS 277
           ++     N    ++  V D+ L +   +S      +++ L LS N               
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGN--------------- 44

Query: 278 KLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVII 337
                                       L+ IS               L     LE + +
Sbjct: 45  ---------------------------PLSQIS------------AADLAPFTKLELLNL 65

Query: 338 SDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPV 397
           S  N+  E     LE+ + LR++ L NN +      P     +I  L  + N +   +  
Sbjct: 66  SS-NVLYETLD--LESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNIS-RVSC 116

Query: 398 EIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY 457
                      + ++ N          G  + + YLDL  N++       LA     LE+
Sbjct: 117 SR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 458 LLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSI 517
           L L  N +       ++   KLK L+L  N  +  +     + + +  + + +N +   I
Sbjct: 174 LNLQYNFIYD--VKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 518 PTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLL 577
              +     L+   +  N        +F       +  ++K  +          +C+   
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQ-NEEECTVPT 287

Query: 578 TLDLCNNRLNGNIPNWMGRLSQLRYLILA----NNNFEGEVPLRLCQLQKLRLLDLSHNN 633
                          +  RL  L+    A      +    +        + R +D     
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347

Query: 634 FS 635
           + 
Sbjct: 348 YR 349

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  114 bits (287), Expect = 7e-27
 Identities = 67/520 (12%), Positives = 147/520 (28%), Gaps = 107/520 (20%)

Query: 120 EELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSL 179
           E   + +  +   ++D+ +    +    +    ++ LDLSG  +   S     +  F  L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISA--ADLAPFTKL 60

Query: 180 KTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQL 239
           + L L SN        T  L  L+ L+ L +++N  +  L        S+  LH  +N +
Sbjct: 61  ELLNLSSNVL----YETLDLESLSTLRTLDLNNNY-VQELL----VGPSIETLHAANNNI 111

Query: 240 TENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSS 299
           +              + + L+NN   +   L+     S+++    + N+I          
Sbjct: 112 S----RVSCSRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEI---------- 156

Query: 300 LTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRS 359
                   +++ ++                                    L  ++  L  
Sbjct: 157 -------DTVNFAE------------------------------------LAASSDTLEH 173

Query: 360 IILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGS 419
           + L  N +                           +  ++      L  L +S N     
Sbjct: 174 LNLQYNFIY-------------------------DVKGQVV--FAKLKTLDLSSNKLA-F 205

Query: 420 IPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKL 479
           +   F     + ++ L NN+L   I + L     NLE+  L  N        +       
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH-CGTLRDFFSKNQ 262

Query: 480 KRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEG 539
           +   +          ++   C+     +            +   +  L          +G
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322

Query: 540 ----PIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMG 595
                +  E         +D  K        +    +    +TL+     L+  + N   
Sbjct: 323 SETERLECERENQARQREIDALKEQYRTVI-DQVTLRKQAKITLEQKKKALDEQVSNGRR 381

Query: 596 RLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635
             ++L   +      + E+     +   L+LL      + 
Sbjct: 382 AHAELDGTLQQAVG-QIELQHATEEQSPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 97.6 bits (243), Expect = 2e-21
 Identities = 53/293 (18%), Positives = 99/293 (33%), Gaps = 44/293 (15%)

Query: 492 GIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYL 551
            I E   N +  +   ++D+ +  ++ +   +   +  + +  N L     ++      L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 552 EILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE 611
           E+L+LS N +            S L TLDL NN +   +         +  L  ANNN  
Sbjct: 61  ELLNLSSNVLYETL---DLESLSTLRTLDLNNNYVQ-ELLV----GPSIETLHAANNNIS 112

Query: 612 GEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDN-TSLHREEGYYDLIPTYRNEYDIVSYN 670
             V       Q  + + L++N  +          + +     Y DL             N
Sbjct: 113 -RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQ----YLDL-----------KLN 154

Query: 671 VGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLS 730
                      +  T   +        +++  L+L  N +  ++  ++    ++ TL+LS
Sbjct: 155 -----------EIDTVNFAELAAS--SDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLS 199

Query: 731 RNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
            N L   +   F +   V  + L  N L   I   L     L  F +  N   
Sbjct: 200 SNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 68.3 bits (167), Expect = 4e-12
 Identities = 31/222 (13%), Positives = 66/222 (29%), Gaps = 40/222 (18%)

Query: 570 FSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDL 629
               +      + ++ L   + +       ++ L L+ N         L    KL LL+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 630 SHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERS 689
           S N    +       ++L                   ++ N        + +        
Sbjct: 66  SSNVLY-ETLDLESLSTL---------------RTLDLNNN------YVQEL-------- 95

Query: 690 YTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVE 749
                    SI  L  + N  I  +    G+  +   + L+ N +T    +      +V+
Sbjct: 96  -----LVGPSIETLHAANNN-ISRVSCSRGQGKK--NIYLANNKITMLRDLDEGCRSRVQ 147

Query: 750 SLDLSYNNLTGKIPPRLVE-LNALAVFTVAHNNLSGKIPERI 790
            LDL  N +       L    + L    + +N +   +  ++
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV 188

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 14/71 (19%), Positives = 25/71 (35%)

Query: 714 IPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALA 773
           I        R     ++ ++L   +     +   V+ LDLS N L+      L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 774 VFTVAHNNLSG 784
           +  ++ N L  
Sbjct: 62  LLNLSSNVLYE 72

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  125 bits (316), Expect = 1e-31
 Identities = 60/335 (17%), Positives = 116/335 (34%), Gaps = 28/335 (8%)

Query: 320 GTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSL-SGPFRLPTRSR 378
           G+     +H    E +          +   L    +  +    A+ +     +R    + 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQANSNN 57

Query: 379 KNIIALDISYNKLQGHIPVEIGK-VLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSN 437
             I     +   L+      +     P    L +         P     ++ L ++ +  
Sbjct: 58  PQI--ETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDA 113

Query: 438 NQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKI-NLTKLKRLNLDGNHFIGGIPES 496
             L  E+P+ +      LE L L+ N L+       I +L +L+ L++     +  +PE 
Sbjct: 114 AGLM-ELPDTMQ-QFAGLETLTLARNPLRA--LPASIASLNRLRELSIRACPELTELPEP 169

Query: 497 LSNCS---------SLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQ 547
           L++           +LQ L +    I  S+P  + N+  L ++ + ++ L   +      
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH 227

Query: 548 LDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILAN 607
           L  LE LDL     A R     F   + L  L L +      +P  + RL+QL  L L  
Sbjct: 228 LPKLEELDLRGCT-ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 608 NNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCL 642
                 +P  + QL    ++ +   +   Q+    
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  123 bits (311), Expect = 6e-31
 Identities = 48/360 (13%), Positives = 90/360 (25%), Gaps = 71/360 (19%)

Query: 419 SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFS-KKINLT 477
                          D +                 N +    +  +L+      +     
Sbjct: 27  PYHDVLSQWQRHYNADRNRWHSAWRQANSN-----NPQIETRTGRALKATADLLEDATQP 81

Query: 478 KLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHL 537
               L L     +   P+     S LQ + I    +   +P  M   + L+ + +  N L
Sbjct: 82  GRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL 139

Query: 538 EGPIPSEFCQLDYLEILDLSKNN--------IAGRPLNGAFSKCSYLLTLDLCNNRLNGN 589
              +P+    L+ L  L +            +A    +G       L +L L    +  +
Sbjct: 140 RA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-S 197

Query: 590 IPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHR 649
           +P  +  L  L+ L + N+     +   +  L KL  LDL         PP         
Sbjct: 198 LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGG----- 251

Query: 650 EEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNK 709
                                                             +  L L    
Sbjct: 252 -----------------------------------------------RAPLKRLILKDCS 264

Query: 710 LIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVEL 769
            +  +P  I  L ++  L+L        +P   + L     + +  +        R V  
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  112 bits (282), Expect = 3e-27
 Identities = 47/319 (14%), Positives = 92/319 (28%), Gaps = 54/319 (16%)

Query: 475 NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPD 534
           + +  + L   G+  +    + LS          +    +        N +         
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTG 65

Query: 535 NHLEG-PIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNW 593
             L+      E         L+L    +   P      + S+L  + +    L   +P+ 
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLPQFP--DQAFRLSHLQHMTIDAAGLM-ELPDT 122

Query: 594 MGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGY 653
           M + + L  L LA N     +P  +  L +LR L +       ++P  L +T    E   
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 654 YDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGE 713
                                                      L ++  L L    +   
Sbjct: 182 -------------------------------------------LVNLQSLRLEWTGIR-S 197

Query: 714 IPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALA 773
           +P+ I  L  + +L +  + L+  +     +L ++E LDL         PP       L 
Sbjct: 198 LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 774 VFTVAHNNLSGKIPERIAQ 792
              +   +    +P  I +
Sbjct: 257 RLILKDCSNLLTLPLDIHR 275

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 94.6 bits (236), Expect = 4e-21
 Identities = 41/223 (18%), Positives = 83/223 (37%), Gaps = 24/223 (10%)

Query: 49  QQLESLDLSGNNIAGCVENEGL-EKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLS 107
             L+ + +    +        L + +   + L+ L L+ N    ++ +S+A L+ L+ LS
Sbjct: 104 SHLQHMTIDAAGL------MELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELS 156

Query: 108 LAY-NRLE-------GSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLS 159
           +     L         +    E   L NL+ L +    I +L  P     L+ L+ L + 
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--PASIANLQNLKSLKIR 214

Query: 160 GLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSL 219
              +     +  +I   P L+ L L+     +           A L+ L +     + +L
Sbjct: 215 NSPLS---ALGPAIHHLPKLEELDLRGCTALRNYPPI--FGGRAPLKRLILKDCSNLLTL 269

Query: 220 PWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNN 262
           P  +  LT L  L +        L S  +  L +  ++++  +
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 94.2 bits (235), Expect = 5e-21
 Identities = 53/345 (15%), Positives = 108/345 (31%), Gaps = 37/345 (10%)

Query: 171 HSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLR 230
           H        + LY + +   +          L+  Q  Y    +      W  AN  + +
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHD-----VLSQWQRHYNADRNRW-HSAWRQANSNNPQ 59

Query: 231 VLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQ-IPMSLEPFFNYSKLKIFHGRENQI 289
           +       L                 L L +      P   +  F  S L+        +
Sbjct: 60  IETRTGRALKATADLLEDATQPGRVALELRSVPLPQFP---DQAFRLSHLQHMTIDAAGL 116

Query: 290 FGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSW 349
             E+  +         L +++L+    +    +P  +   + L  + I       E P  
Sbjct: 117 -MELPDTMQQFA---GLETLTLA---RNPLRALPASIASLNRLRELSIRACPELTELPEP 169

Query: 350 LLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFL 409
           L   + +     L                 N+ +L + +  ++  +P  I   L NL  L
Sbjct: 170 LASTDASGEHQGL----------------VNLQSLRLEWTGIR-SLPASIAN-LQNLKSL 211

Query: 410 TISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQL 469
            I  +  + ++  +   +  L  LDL         P     G   L+ L+L + S    L
Sbjct: 212 KIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTL 269

Query: 470 FSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDIS 514
                 LT+L++L+L G   +  +P  ++   +   + +  +  +
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.7 bits (231), Expect = 2e-20
 Identities = 50/348 (14%), Positives = 102/348 (29%), Gaps = 55/348 (15%)

Query: 202 LAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSN 261
            +  + LY   +  +         L+  +  +  D     +       +  + ++   + 
Sbjct: 11  SSGRENLYFQGSTALRPYH---DVLSQWQRHYNADRNRWHSAWRQA--NSNNPQIETRTG 65

Query: 262 NHFQ-IPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGG 320
              +     LE             R   +                               
Sbjct: 66  RALKATADLLE-DATQPGRVALELRSVPL------------------------------P 94

Query: 321 TIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPT--RSR 378
             P   +   HL+ + I    +  E P  + +    L ++ LA N L     LP    S 
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR---ALPASIASL 149

Query: 379 KNIIALDISYNKLQGHIPVEIGKV--------LPNLGFLTISFNAFNGSIPSSFGDMNSL 430
             +  L I        +P  +           L NL  L + +     S+P+S  ++ +L
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL 208

Query: 431 IYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFI 490
             L + N+ L+  +   +      LE L L   +              LKRL L     +
Sbjct: 209 KSLKIRNSPLS-ALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266

Query: 491 GGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLE 538
             +P  +   + L+ L +        +P+ +  +     I++P +   
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.0 bits (224), Expect = 1e-19
 Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 24/210 (11%)

Query: 48  FQQLESLDLSGNNIAGCVENEGL-EKLSGLSNLKFLDLSHNS---------FNNSVLSSL 97
           F  LE+L L+ N +        L   ++ L+ L+ L +              +       
Sbjct: 126 FAGLETLTLARNPL------RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 98  AGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLD 157
            GL +L++L L +  +  S+    + +L NL+ L + ++ +  L        L KL  LD
Sbjct: 180 QGLVNLQSLRLEWTGIR-SLP-ASIANLQNLKSLKIRNSPLSAL--GPAIHHLPKLEELD 235

Query: 158 LSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIG 217
           L G             G    LK L LK  +   T+     +  L  L++L +     + 
Sbjct: 236 LRGCTAL--RNYPPIFGGRAPLKRLILKDCSNLLTLP--LDIHRLTQLEKLDLRGCVNLS 291

Query: 218 SLPWCLANLTSLRVLHVPDNQLTENLSSSP 247
            LP  +A L +  ++ VP +   +     P
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQHRP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.8 bits (208), Expect = 1e-17
 Identities = 49/329 (14%), Positives = 108/329 (32%), Gaps = 39/329 (11%)

Query: 51  LESLDLSGNNIAGCVENEGLEKL-SGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLA 109
            E+L   G+          L      LS  +    +  +  +S     A  ++ +  +  
Sbjct: 14  RENLYFQGST--------ALRPYHDVLSQWQRHYNADRNRWHS-AWRQANSNNPQIETRT 64

Query: 110 YNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKV 169
              L+ + ++ E  +      L++    +     P     L  L+ + +    +    ++
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQF--PDQAFRLSHLQHMTIDAAGLM---EL 119

Query: 170 LHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP--------- 220
             ++  F  L+TL L  N           +  L  L+EL I     +  LP         
Sbjct: 120 PDTMQQFAGLETLTLARNPL---RALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 221 WCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHF-QIPMSLEPFFNYSKL 279
                L +L+ L +    +   L +S + +L +++ L + N+    +  ++    +  KL
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRS-LPAS-IANLQNLKSLKIRNSPLSALGPAIH---HLPKL 231

Query: 280 KIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISD 339
           +    R                    L  + L D   S+  T+P  ++    LE + +  
Sbjct: 232 EELDLRGCTALRNYPPIFGGRA---PLKRLILKDC--SNLLTLPLDIHRLTQLEKLDLRG 286

Query: 340 VNMRGEFPSWLLENNTNLRSIILANNSLS 368
                  PS  +        I++  +  +
Sbjct: 287 CVNLSRLPSL-IAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 703 LDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKI 762
           L+L    L  + P +   L  +  + +    L   +P T      +E+L L+ N L   +
Sbjct: 86  LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-AL 142

Query: 763 PPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDE 798
           P  +  LN L   ++       ++PE +A      E
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  125 bits (317), Expect = 3e-31
 Identities = 66/309 (21%), Positives = 122/309 (39%), Gaps = 25/309 (8%)

Query: 330 HHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRS---RKNIIALDI 386
           ++ + V   +  MR + P+ LL++   +  + L +  +     + T +      I  L +
Sbjct: 45  NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYM 100

Query: 387 SYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPE 446
            +N ++ ++P  + + +P L  L +  N  +      F +   L  L +SNN L   I +
Sbjct: 101 GFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIED 158

Query: 447 HLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGL 506
                  +L+ L LS+N L     S    +  L   N+  N        +L+   +++ L
Sbjct: 159 DTFQATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSYNLL-----STLAIPIAVEEL 210

Query: 507 YISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPL 566
             S N I+         ++ L    +  N+L     +       L  +DLS N +     
Sbjct: 211 DASHNSINVVRGPVNVELTILK---LQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM- 264

Query: 567 NGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRL 626
              F K   L  L + NNRL   +  +   +  L+ L L++N+    V     Q  +L  
Sbjct: 265 YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 322

Query: 627 LDLSHNNFS 635
           L L HN+  
Sbjct: 323 LYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  116 bits (292), Expect = 5e-28
 Identities = 75/417 (17%), Positives = 143/417 (34%), Gaps = 60/417 (14%)

Query: 402 VLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS 461
                  + I     +         +N+   +   N+ +  ++P  L      +E L L+
Sbjct: 19  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN 77

Query: 462 NN---SLQGQLFSKKINLTKLKRLNLDGNHFIGGIPES-LSNCSSLQGLYISDNDISGSI 517
           +     +    F+       +++L +  N  I  +P     N   L  L +  ND+S S+
Sbjct: 78  DLQIEEIDTYAFA---YAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLS-SL 132

Query: 518 PTWM-GNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYL 576
           P  +  N   L  + M +N+LE      F     L+ L LS N +    L         L
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL-SLIPS---L 188

Query: 577 LTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSG 636
              ++  N L+  +         +  L  ++N+      +R     +L +L L HNN + 
Sbjct: 189 FHANVSYNLLS-TLAI----PIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLT- 239

Query: 637 QIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQP 696
                L+   L       DL           SYN      E E I +    +        
Sbjct: 240 DTAWLLNYPGLV----EVDL-----------SYN------ELEKIMYHPFVK-------- 270

Query: 697 LESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYN 756
           ++ +  L +S N+ +  +      +  +  L+LS N+L   +        ++E+L L +N
Sbjct: 271 MQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 328

Query: 757 NLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLP 813
           ++   +       + L   T++HN+         A F      + +     C     
Sbjct: 329 SIV-TLKLST--HHTLKNLTLSHNDWDC--NSLRALFRNVARPAVDDADQHCKIDYQ 380

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  111 bits (279), Expect = 2e-26
 Identities = 72/410 (17%), Positives = 147/410 (35%), Gaps = 63/410 (15%)

Query: 204 HLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNH 263
              +++ID         +    L + +++   ++ + + L ++ L     +ELL L++  
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQ 80

Query: 264 F-QIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTI 322
             +I      F     ++  +   N I         ++     LT + L           
Sbjct: 81  IEEIDTYA--FAYAHTIQKLYMGFNAIRYLPPHVFQNVP---LLTVLVLER--------- 126

Query: 323 PKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPT---RSRK 379
                             N     P  +  N   L ++ ++NN+L    R+     ++  
Sbjct: 127 ------------------NDLSSLPRGIFHNTPKLTTLSMSNNNLE---RIEDDTFQATT 165

Query: 380 NIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQ 439
           ++  L +S N+L  H+ +    ++P+L    +S+N       S+     ++  LD S+N 
Sbjct: 166 SLQNLQLSSNRLT-HVDLS---LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNS 216

Query: 440 LTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSN 499
           +   +   +      L  L L +N+L     +  +N   L  ++L  N     +      
Sbjct: 217 IN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 270

Query: 500 CSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKN 559
              L+ LYIS+N +  ++  +   I  L  + +  NHL   +     Q D LE L L  N
Sbjct: 271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHN 328

Query: 560 NIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNN 609
           +I    L         L  L L +N  + N  +       +    + + +
Sbjct: 329 SIVTLKL-STHHT---LKNLTLSHNDWDCN--SLRALFRNVARPAVDDAD 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (272), Expect = 2e-25
 Identities = 77/453 (16%), Positives = 139/453 (30%), Gaps = 92/453 (20%)

Query: 76  LSNLKFLDLSHNSFNNSVLSSLA--GLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDM 133
             +  F D+  +     V        L++ K ++   + +   +    LDS   +E L++
Sbjct: 18  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNL 76

Query: 134 SDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTV 193
           +D +I+ +     +     ++ L +    IR      H   + P L  L L+ N+   + 
Sbjct: 77  NDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPP--HVFQNVPLLTVLVLERNDL--SS 131

Query: 194 TTTQGLCELAHLQELYIDHNDFIGSLPW-CLANLTSLRVLHVPDNQLTENLSSSPLMHLT 252
                      L  L + +N+ +  +        TSL+ L +  N+LT       L  + 
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT----HVDLSLIP 186

Query: 253 SIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKF--QLTSIS 310
           S+    +S N       L        ++      N I        + +      +LT + 
Sbjct: 187 SLFHANVSYNL------LSTLAIPIAVEELDASHNSI--------NVVRGPVNVELTILK 232

Query: 311 LSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGP 370
           L                             N   +     L N   L  + L+ N L   
Sbjct: 233 LQH---------------------------NNLTDTAW--LLNYPGLVEVDLSYNELE-- 261

Query: 371 FRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSL 430
                                   I       +  L  L IS N    ++      + +L
Sbjct: 262 -----------------------KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL 297

Query: 431 IYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFI 490
             LDLS+N L   +  +       LE L L +NS+     S       LK L L  N + 
Sbjct: 298 KVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTLKLS---THHTLKNLTLSHNDWD 352

Query: 491 GGIPESLSNCSSLQGLYISDNDISGSIPTWMGN 523
                +L    ++    + D D    I   + +
Sbjct: 353 CNSLRALF--RNVARPAVDDADQHCKIDYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  102 bits (255), Expect = 3e-23
 Identities = 49/363 (13%), Positives = 116/363 (31%), Gaps = 36/363 (9%)

Query: 30  LSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSF 89
           + +++ +               + +    + +           L     ++ L+L+    
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL----LDSFRQVELLNLNDLQI 81

Query: 90  NNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRG 149
                 + A   +++ L + +N +   +      ++  L  L +  N++ +L     +  
Sbjct: 82  EEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHN 139

Query: 150 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELY 209
             KL  L +S   +        +  +  SL+ L L SN       T   L  +  L    
Sbjct: 140 TPKLTTLSMSNNNLERIED--DTFQATTSLQNLQLSSNRL-----THVDLSLIPSLFHAN 192

Query: 210 IDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMS 269
           + +N  + +L        ++  L    N +   +     + LT    L L +N+      
Sbjct: 193 VSYN-LLSTLA----IPIAVEELDASHNSINV-VRGPVNVELTI---LKLQHNNLT---D 240

Query: 270 LEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQ 329
                NY  L       N++   +      +    +L  + +S++       +  +    
Sbjct: 241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ---RLERLYISNNRLVA---LNLYGQPI 294

Query: 330 HHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYN 389
             L+ + +S  N               L ++ L +NS+     L   +   +  L +S+N
Sbjct: 295 PTLKVLDLSH-NHLLHVERNQP-QFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHN 349

Query: 390 KLQ 392
              
Sbjct: 350 DWD 352

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  127 bits (321), Expect = 4e-31
 Identities = 105/530 (19%), Positives = 175/530 (33%), Gaps = 91/530 (17%)

Query: 126 SNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTL 182
                L++S N I  L    D   L KLR L +S  RI+     L     F     L+ L
Sbjct: 21  QKTTILNISQNYISELW-TSDILSLSKLRILIISHNRIQY----LDI-SVFKFNQELEYL 74

Query: 183 YLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWC--LANLTSLRVLHVPDNQLT 240
            L  N                +L+ L +  N F  +LP C    N++ L+ L +    L 
Sbjct: 75  DLSHNKL-----VKISCHPTVNLKHLDLSFNAF-DALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 241 ENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSL 300
              S  P+ HL   ++L++    +      E       L+ F+     I          +
Sbjct: 129 -KSSVLPIAHLNISKVLLVLGETYGEKEDPE------GLQDFNTESLHIVFPTNKEFHFI 181

Query: 301 TPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSI 360
                 T  +L                         + + N    F S L +  TN +  
Sbjct: 182 LDVSVKTVANLE------------------LSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223

Query: 361 ILANNSLSGPFRLPTR-----SRKNIIALDISYNKLQGHIPVE----IGKVLPNLGFLTI 411
            L  N++   +    R         +    IS  KLQG +        G  L  L    +
Sbjct: 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV 283

Query: 412 SFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF----NLEYLLLSNNSLQG 467
             + F       +   +++   + + +         + M C        +L  SNN L  
Sbjct: 284 VSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM-----VHMLCPSKISPFLHLDFSNNLLTD 338

Query: 468 QLFSKKINLTKLKRLNLDGNHF--IGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNIS 525
            +F    +LT+L+ L L  N    +  I E  +   SLQ L IS N +S           
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK------- 391

Query: 526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLT-LDLCNN 584
                             +      L  L++S N +     +  F      +  LDL +N
Sbjct: 392 ----------------KGDCSWTKSLLSLNMSSNILT----DTIFRCLPPRIKVLDLHSN 431

Query: 585 RLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNF 634
           ++  +IP  + +L  L+ L +A+N  +        +L  L+ + L  N +
Sbjct: 432 KIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  118 bits (296), Expect = 7e-28
 Identities = 77/485 (15%), Positives = 168/485 (34%), Gaps = 55/485 (11%)

Query: 40  LNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSL-- 97
           L  S      +L  L +S N I   ++    +       L++LDLSHN      L  +  
Sbjct: 36  LWTSDILSLSKLRILIISHNRIQ-YLDISVFKF---NQELEYLDLSHNK-----LVKISC 86

Query: 98  AGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLD 157
               +LK+L L++N  +     +E  ++S L+ L +S   ++          +  L    
Sbjct: 87  HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISK 142

Query: 158 LSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIG 217
           +  L + +               T                       L  ++  + +F  
Sbjct: 143 VL-LVLGETYGEKEDPEGLQDFNTE---------------------SLHIVFPTNKEFHF 180

Query: 218 SLPWCLANLTSLRVLHVPDNQ---LTENLSSSPLMHLTSIELLILSNNHFQIP----MSL 270
            L   +  + +L + ++             S      T+ +L  L+ N+ +      + +
Sbjct: 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240

Query: 271 EPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQH 330
                ++ +  F     ++ G+++      +    L ++S+        G    ++Y   
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT-SLKALSIHQVVSDVFGFPQSYIYEIF 299

Query: 331 HLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNK 390
               +    V+             +    +  +NN L+            +  L +  N+
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 391 LQGHIPVEIG--KVLPNLGFLTISFNAFNGSIPS-SFGDMNSLIYLDLSNNQLTGEIPEH 447
           L+  +         + +L  L IS N+ +            SL+ L++S+N LT  I   
Sbjct: 360 LK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418

Query: 448 LAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPE-SLSNCSSLQGL 506
           L      ++ L L +N ++  +  + + L  L+ LN+  N  +  +P+      +SLQ +
Sbjct: 419 LPP---RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKI 473

Query: 507 YISDN 511
           ++  N
Sbjct: 474 WLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 96.5 bits (240), Expect = 7e-21
 Identities = 76/416 (18%), Positives = 146/416 (35%), Gaps = 43/416 (10%)

Query: 384 LDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 443
           L+IS N +   +       L  L  L IS N       S F     L YLDLS+N+L   
Sbjct: 26  LNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84

Query: 444 IPEHLAMGCFNLEYLLLSNNSLQ----GQLFSKKINLTKLKRLNLDGNHFIGGIPESLSN 499
                     NL++L LS N+       + F    N+++LK L L   H        +++
Sbjct: 85  SCHPTV----NLKHLDLSFNAFDALPICKEFG---NMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 500 CSSLQGLYISDNDISGSIPT------WMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEI 553
            +  + L +                    ++  +       + +          L+   I
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 554 LDLSKNNIAGRPLNGAFS--KCSYLLTLDLCNNRLNGNIPNWMGRL---SQLRYLILANN 608
             + ++N     L+          L  L L N     N    + +L   + + Y  ++N 
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 609 NFEGEVPLRL-----CQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNE 663
             +G++  R        L+ L +  +  + F        +  S    + +        + 
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV------SG 311

Query: 664 YDIVSYNVGPSMGEKETIDFTTKERSYTYKGQP--LESIHGLDLSCNKL--IGEIPSRIG 719
             +V       +     +DF+    + T       L  +  L L  N+L  + +I     
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371

Query: 720 ELIRIHTLNLSRNNLTGTIP-VTFSNLRQVESLDLSYNNLT----GKIPPRLVELN 770
           ++  +  L++S+N+++        S  + + SL++S N LT      +PPR+  L+
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLD 427

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 89.9 bits (223), Expect = 9e-19
 Identities = 71/432 (16%), Positives = 139/432 (32%), Gaps = 32/432 (7%)

Query: 347 PSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNL 406
              + + N  L  + L++N L     +      N+  LD+S+N        +    +  L
Sbjct: 61  DISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 407 GFLTISFNAFNGSIPSSFGDMNSL-IYLDLSNNQLTGEIPEHLA-MGCFNLEYLLLSNNS 464
            FL +S      S       +N   + L L       E PE L      +L  +  +N  
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177

Query: 465 LQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCS-----------SLQGLYISDNDI 513
               L      +  L+  N+            LS  +           +L  +  + N  
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237

Query: 514 SGSIPT-WMGNISFLDAIIMPDNHLEGPIPSE-----FCQLDYLEILDLSKNNIAGRPLN 567
              +   W   + +     + +  L+G +           L  L I  +  +++ G P +
Sbjct: 238 IRILQLVWHTTVWYFS---ISNVKLQGQLDFRDFDYSGTSLKALSIHQVV-SDVFGFPQS 293

Query: 568 GAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLL 627
             +   S +   +   +           ++S   +L  +NN     V      L +L  L
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353

Query: 628 DLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEY-DIVSYNVGPSMGEKETIDFTTK 686
            L  N    ++    + T+  +     D+    +N                  +++ ++ 
Sbjct: 354 ILQMNQLK-ELSKIAEMTTQMKSLQQLDI---SQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

Query: 687 ERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLR 746
             + T        I  LDL  NK+   IP ++ +L  +  LN++ N L       F  L 
Sbjct: 410 ILTDTIFRCLPPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLT 468

Query: 747 QVESLDLSYNNL 758
            ++ + L  N  
Sbjct: 469 SLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 86.8 bits (215), Expect = 8e-18
 Identities = 65/405 (16%), Positives = 130/405 (32%), Gaps = 45/405 (11%)

Query: 380 NIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQ 439
           +   +D S N L  H+P ++         L IS N  +    S    ++ L  L +S+N+
Sbjct: 1   SEFLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNR 56

Query: 440 LTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIG-GIPESLS 498
           +   +   +      LEYL LS+N L             LK L+L  N F    I +   
Sbjct: 57  IQ-YLDISVFKFNQELEYLDLSHNKLVKISCHP---TVNLKHLDLSFNAFDALPICKEFG 112

Query: 499 NCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSK 558
           N S L+ L +S   +  S    + +++    +++                + L+  +   
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED-----PEGLQDFNTES 167

Query: 559 NNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRL 618
            +I   P N  F        LD+    +     + +  + +        +          
Sbjct: 168 LHIV-FPTNKEFHFI-----LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPK 221

Query: 619 CQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEK 678
                L  ++ + N+F  +I   + +T++            Y +  ++            
Sbjct: 222 LSNLTLNNIETTWNSFI-RILQLVWHTTV-----------WYFSISNV------------ 257

Query: 679 ETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTI 738
             +      R + Y G  L+++    +  +               ++  N + +      
Sbjct: 258 -KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 739 PVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
            +  S +     LD S N LT  +      L  L    +  N L 
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 81.8 bits (202), Expect = 3e-16
 Identities = 47/241 (19%), Positives = 88/241 (36%), Gaps = 37/241 (15%)

Query: 26  AIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLS 85
           A+ +  +      +    ++  F  +   + + +              S +S    LD S
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC----PSKISPFLHLDFS 332

Query: 86  HNSFNNSVLSSLAGLSSLKNLSLAYNRLEG-SINIEELDSLSNLEGLDMSDNEIDNLVVP 144
           +N   ++V  +   L+ L+ L L  N+L+  S   E    + +L+ LD+S N +      
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

Query: 145 KDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAH 204
            D    + L  L++S                          SN    T+      C    
Sbjct: 393 GDCSWTKSLLSLNMS--------------------------SNILTDTIFR----CLPPR 422

Query: 205 LQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHF 264
           ++ L +  N  I S+P  +  L +L+ L+V  NQL   +       LTS++ + L  N +
Sbjct: 423 IKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPW 480

Query: 265 Q 265
            
Sbjct: 481 D 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.4 bits (175), Expect = 6e-13
 Identities = 67/443 (15%), Positives = 131/443 (29%), Gaps = 76/443 (17%)

Query: 11  QWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGL 70
            + ++        +  +  L L+       +          + L + G       + EGL
Sbjct: 101 AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160

Query: 71  EKLSGLS-------NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELD 123
           +  +  S       N +F  +   S        L+ +  +   +     L     ++   
Sbjct: 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220

Query: 124 SLSNLE--GLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKT 181
            LSNL    ++ + N    ++          + +  +S ++++          S  SLK 
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLVW---HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277

Query: 182 LYLKSNNFAKTVTTTQGLC-ELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLT 240
           L +              +    +++       +        C + ++    L   +N LT
Sbjct: 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337

Query: 241 ENLSSSPLMHLTSIELLILSNNHFQ-IPMSLEPFFNYSKLKIFHGRENQI-FGEIESSHS 298
           +        HLT +E LIL  N  + +    E       L+     +N + + E +   S
Sbjct: 338 D-TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396

Query: 299 SLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLR 358
                  L S+++S                                              
Sbjct: 397 WTK---SLLSLNMSS--------------------------------------------- 408

Query: 359 SIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNG 418
                N      FR      K    LD+  NK++  IP ++ K L  L  L ++ N    
Sbjct: 409 -----NILTDTIFRCLPPRIKV---LDLHSNKIK-SIPKQVVK-LEALQELNVASNQLK- 457

Query: 419 SIP-SSFGDMNSLIYLDLSNNQL 440
           S+P   F  + SL  + L  N  
Sbjct: 458 SVPDGIFDRLTSLQKIWLHTNPW 480

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  126 bits (319), Expect = 6e-31
 Identities = 69/382 (18%), Positives = 125/382 (32%), Gaps = 72/382 (18%)

Query: 384 LDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 443
           +     +    +P  I         L +  N         F     L  L+L+ N ++  
Sbjct: 16  VLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-A 70

Query: 444 IPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKINLTKLKRLNLDGNHFIGGIPE-SLSN 499
           +        FNL  L L +N    +   +F+    L+ L +L++  N  I  + +    +
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT---GLSNLTKLDISENK-IVILLDYMFQD 126

Query: 500 CSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKN 559
             +L+ L + DND+   I                           F  L+ LE L L K 
Sbjct: 127 LYNLKSLEVGDNDLV-YIS-----------------------HRAFSGLNSLEQLTLEKC 162

Query: 560 NIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLC 619
           N+   P   A S    L+ L L +  +N        RL +L+ L +++  +   +     
Sbjct: 163 NLTSIP-TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 620 QLQKLRLLDLSHNNFSGQIPPCL--DNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGE 677
               L  L ++H N +  +P         L     + +L     N    +  ++      
Sbjct: 222 YGLNLTSLSITHCNLT-AVPYLAVRHLVYLR----FLNL---SYNPISTIEGSM------ 267

Query: 678 KETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRI-GELIRIHTLNLSRNNLTG 736
                              L  +  + L   + +  +       L  +  LN+S N LT 
Sbjct: 268 -----L-----------HELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTT 310

Query: 737 TIPVTFSNLRQVESLDLSYNNL 758
                F ++  +E+L L  N L
Sbjct: 311 LEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  124 bits (313), Expect = 3e-30
 Identities = 66/303 (21%), Positives = 107/303 (35%), Gaps = 19/303 (6%)

Query: 341 NMRGEFPSWLLENNTNLRSIILANNSLS----GPFRLPTRSRKNIIALDISYNKLQGHIP 396
           N           +  +L  + L  N +S    G F     +  N+  L +  N+L+  IP
Sbjct: 42  NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN----NLFNLRTLGLRSNRLK-LIP 96

Query: 397 VEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLE 456
           + +   L NL  L IS N     +   F D+ +L  L++ +N L   I      G  +LE
Sbjct: 97  LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLE 155

Query: 457 YLLLSNN---SLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDI 513
            L L      S+  +  S   +L  L  L L   +       S      L+ L IS    
Sbjct: 156 QLTLEKCNLTSIPTEALS---HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

Query: 514 SGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKC 573
             ++         L ++ +   +L          L YL  L+LS N I+         + 
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE-GSMLHEL 271

Query: 574 SYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQ-LQKLRLLDLSHN 632
             L  + L   +L    P     L+ LR L ++ N     +   +   +  L  L L  N
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSN 330

Query: 633 NFS 635
             +
Sbjct: 331 PLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  123 bits (310), Expect = 7e-30
 Identities = 62/292 (21%), Positives = 109/292 (37%), Gaps = 41/292 (14%)

Query: 354 NTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISF 413
           +   R+++           +P         LD+  N+++  +  +     P+L  L ++ 
Sbjct: 10  SAQDRAVLCHRKRFV---AVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNE 65

Query: 414 NAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLF 470
           N  +   P +F ++ +L  L L +N+L   IP  +  G  NL  L +S N    L   +F
Sbjct: 66  NIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMF 124

Query: 471 SKKINLTKLKRLNLDGNHFIGGIPE-SLSNCSSLQGLYISDNDISGSIPTWMGNISFLDA 529
               +L  LK L +  N  +  I   + S  +SL+ L +   +++ SIP           
Sbjct: 125 Q---DLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLT-SIP----------- 168

Query: 530 IIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGN 589
                             L  L +L L   NI     + +F +   L  L++ +      
Sbjct: 169 ------------TEALSHLHGLIVLRLRHLNINAIR-DYSFKRLYRLKVLEISHWPYLDT 215

Query: 590 IPNWMGRLSQLRYLILANNNFEGEVPLRLCQ-LQKLRLLDLSHNNFSGQIPP 640
           +         L  L + + N    VP    + L  LR L+LS+N  S  I  
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEG 265

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  118 bits (297), Expect = 4e-28
 Identities = 58/290 (20%), Positives = 116/290 (40%), Gaps = 19/290 (6%)

Query: 354 NTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISF 413
            T  R + L  N +    +    S  ++  L+++ N +   +       L NL  L +  
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89

Query: 414 NAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLF 470
           N         F  +++L  LD+S N++   + +++    +NL+ L + +N    +  + F
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148

Query: 471 SKKINLTKLKRLNLDGNHFIGGIP-ESLSNCSSLQGLYISDNDISGSIP----TWMGNIS 525
           S    L  L++L L+  + +  IP E+LS+   L  L +   +I+ +I       +  + 
Sbjct: 149 S---GLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLK 203

Query: 526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNR 585
            L+   +        +         L  L ++  N+   P   A     YL  L+L  N 
Sbjct: 204 VLE---ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP-YLAVRHLVYLRFLNLSYNP 259

Query: 586 LNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635
           ++    + +  L +L+ + L         P     L  LR+L++S N  +
Sbjct: 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  112 bits (282), Expect = 3e-26
 Identities = 57/252 (22%), Positives = 96/252 (38%), Gaps = 16/252 (6%)

Query: 40  LNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAG 99
           LN   F  F  LE L+L+ N ++  VE       + L NL+ L L  N      L    G
Sbjct: 47  LNQDEFASFPHLEELELNENIVSA-VEPGA---FNNLFNLRTLGLRSNRLKLIPLGVFTG 102

Query: 100 LSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLS 159
           LS+L  L ++ N++   +       L NL+ L++ DN++  +   + + GL  L  L L 
Sbjct: 103 LSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYI-SHRAFSGLNSLEQLTLE 160

Query: 160 GLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSL 219
              +        ++     L  L L+  N             L  L+ L I H  ++ ++
Sbjct: 161 KCNLTSIPT--EALSHLHGLIVLRLRHLNI--NAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 220 PWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEP--FFNYS 277
                   +L  L +    LT  +    + HL  +  L LS N      ++E        
Sbjct: 217 TPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPIS---TIEGSMLHELL 272

Query: 278 KLKIFHGRENQI 289
           +L+       Q+
Sbjct: 273 RLQEIQLVGGQL 284

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  112 bits (282), Expect = 3e-26
 Identities = 70/328 (21%), Positives = 132/328 (40%), Gaps = 32/328 (9%)

Query: 48  FQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLS 107
             +   LDL  N I    ++E     +   +L+ L+L+ N  +     +   L +L+ L 
Sbjct: 31  PTETRLLDLGKNRIKTLNQDE----FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86

Query: 108 LAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGS 167
           L  NRL+  I +     LSNL  LD+S+N+I  L +   ++ L  L+ L++    +    
Sbjct: 87  LRSNRLK-LIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDNDLV--- 141

Query: 168 KVLHSI--GSF---PSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWC 222
                I   +F    SL+ L L+  N   T   T+ L  L  L  L + H +      + 
Sbjct: 142 ----YISHRAFSGLNSLEQLTLEKCNL--TSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195

Query: 223 LANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQ-IPMSLEPFFNYSKLKI 281
              L  L+VL +      + ++ + L +  ++  L +++ +   +P       +   L+ 
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLA--VRHLVYLRF 252

Query: 282 FHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKF-LYHQHHLEFVIISDV 340
            +   N I   IE   S L    +L  I L          +  +     ++L  + +S  
Sbjct: 253 LNLSYNPI-STIEG--SMLHELLRLQEIQLV---GGQLAVVEPYAFRGLNYLRVLNVSGN 306

Query: 341 NMRGEFPSWLLENNTNLRSIILANNSLS 368
            +       +  +  NL ++IL +N L+
Sbjct: 307 QLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  109 bits (273), Expect = 4e-25
 Identities = 73/373 (19%), Positives = 124/373 (33%), Gaps = 79/373 (21%)

Query: 126 SNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTL 182
           +    LD+  N I  L    ++     L  L+L+   +      +   G+F    +L+TL
Sbjct: 32  TETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVSA----VEP-GAFNNLFNLRTL 85

Query: 183 YLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPW-CLANLTSLRVLHVPDNQLTE 241
            L+SN     +        L++L +L I  N  I  L      +L +L+ L V DN L  
Sbjct: 86  GLRSNRL--KLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVY 142

Query: 242 NLSSSPLMHLTSIELLILSNNHFQ-IPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSL 300
            +S      L S+E L L   +   IP       +   L +   R               
Sbjct: 143 -ISHRAFSGLNSLEQLTLEKCNLTSIPTEA--LSHLHGLIVLRLRHLN------------ 187

Query: 301 TPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSI 360
                + +I                    + L+ + IS            L    NL S+
Sbjct: 188 -----INAIR------------DYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSL 229

Query: 361 ILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSI 420
            + + +L+                          +P    + L  L FL +S+N  +   
Sbjct: 230 SITHCNLT-------------------------AVPYLAVRHLVYLRFLNLSYNPISTIE 264

Query: 421 PSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKINLT 477
            S   ++  L  + L   QL   +  +   G   L  L +S N   +L+  +F    ++ 
Sbjct: 265 GSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH---SVG 320

Query: 478 KLKRLNLDGNHFI 490
            L+ L LD N   
Sbjct: 321 NLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 82.8 bits (205), Expect = 1e-16
 Identities = 59/299 (19%), Positives = 108/299 (36%), Gaps = 47/299 (15%)

Query: 493 IPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE 552
           +PE +   +  + L +  N I  ++                          EF    +LE
Sbjct: 26  VPEGIP--TETRLLDLGKNRIK-TLN-----------------------QDEFASFPHLE 59

Query: 553 ILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWM-GRLSQLRYLILANNNFE 611
            L+L++N ++     GAF+    L TL L +NRL   IP  +   LS L  L ++ N   
Sbjct: 60  ELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV 117

Query: 612 GEVPLRLCQLQKLRLLDLSHNNFSGQIPP-CLDN-TSLHREEGYYDLIPTYRNEYDIVSY 669
             +      L  L+ L++  N+    I         SL +      L    +     +  
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQ----LTL---EKCNLTSIPT 169

Query: 670 NVGPSMGEKETIDFT----TKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIH 725
                +     +          R Y++K   L  +  L++S    +  +       + + 
Sbjct: 170 EALSHLHGLIVLRLRHLNINAIRDYSFKR--LYRLKVLEISHWPYLDTMTPNCLYGLNLT 227

Query: 726 TLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPR-LVELNALAVFTVAHNNLS 783
           +L+++  NLT    +   +L  +  L+LSYN ++  I    L EL  L    +    L+
Sbjct: 228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.4 bits (183), Expect = 6e-14
 Identities = 51/242 (21%), Positives = 88/242 (36%), Gaps = 38/242 (15%)

Query: 551 LEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNF 610
             +LDL KN I        F+   +L  L+L  N ++   P     L  LR L L +N  
Sbjct: 34  TRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 611 EGEVPLRLCQ-LQKLRLLDLSHNNFSGQIPPCL--DNTSLHREEGYYDLIPTYRNEYDIV 667
           +  +PL +   L  L  LD+S N     +   +  D  +L       ++     N+   +
Sbjct: 93  K-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLK----SLEV---GDNDLVYI 143

Query: 668 SYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRI-GELIRIHT 726
           S+             F             L S+  L L     +  IP+     L  +  
Sbjct: 144 SHRA-----------F-----------SGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIV 180

Query: 727 LNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKI 786
           L L   N+      +F  L +++ L++S+      + P  +    L   ++ H NL+  +
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AV 239

Query: 787 PE 788
           P 
Sbjct: 240 PY 241

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.8 bits (166), Expect = 7e-12
 Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 22/136 (16%)

Query: 45  FTPFQQLESLDLSGNNIAGCVENEGLEKLS--------------------GLSNLKFLDL 84
           F    +L+ L++S       +    L  L+                     L  L+FL+L
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255

Query: 85  SHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVP 144
           S+N  +    S L  L  L+ + L   +L   +       L+ L  L++S N++  L   
Sbjct: 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTL-EE 313

Query: 145 KDYRGLRKLRFLDLSG 160
             +  +  L  L L  
Sbjct: 314 SVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 699 SIHGLDLSCNKL-IGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNN 757
           S     + C++     +P  I        L+L +N +       F++   +E L+L+ N 
Sbjct: 10  SAQDRAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67

Query: 758 LTGKIPPR-LVELNALAVFTVAHNNLSGKIPERI 790
           ++  + P     L  L    +  N L   IP  +
Sbjct: 68  VS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGV 99

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  124 bits (313), Expect = 3e-30
 Identities = 93/524 (17%), Positives = 172/524 (32%), Gaps = 114/524 (21%)

Query: 48  FQQLESLDLSGNNIAGCVENEGLEKLS---------GLSNLKFLDLSHNSFNNSVLSSL- 97
            +       + +           E+                  L+L++       LSSL 
Sbjct: 33  VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-----LSSLP 87

Query: 98  AGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLD 157
                L++L  + N L   +  E   SL +L   + +   + +L           L +L 
Sbjct: 88  ELPPHLESLVASCNSLT-ELP-ELPQSLKSLLVDNNNLKALSDL--------PPLLEYLG 137

Query: 158 LSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIG 217
           +S  ++      L  + +   LK + + +N+  K             L+ +   +N  + 
Sbjct: 138 VSNNQLEK----LPELQNSSFLKIIDVDNNSLKKLPD------LPPSLEFIAAGNN-QLE 186

Query: 218 SLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYS 277
            LP  L NL  L  ++  +N L + L         S+E ++  NN  +    L    N  
Sbjct: 187 ELP-ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILE---ELPELQNLP 237

Query: 278 KLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVII 337
            L   +   N +                               T+P        LE + +
Sbjct: 238 FLTTIYADNNLL------------------------------KTLPDLP---PSLEALNV 264

Query: 338 SDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPV 397
            D N   + P        +L  + ++ N  SG   LP     N+  L+ S N+++     
Sbjct: 265 RD-NYLTDLPELP----QSLTFLDVSENIFSGLSELP----PNLYYLNASSNEIR----- 310

Query: 398 EIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY 457
            +  + P+L  L +S N     +P+       L  L  S N L  E+PE       NL+ 
Sbjct: 311 SLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQ----NLKQ 361

Query: 458 LLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSI 517
           L +  N L+ +      ++  L+  +      +  +PE   N   L+ L++  N +    
Sbjct: 362 LHVEYNPLR-EFPDIPESVEDLRMNSH-----LAEVPELPQN---LKQLHVETNPLR-EF 411

Query: 518 PTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 561
           P    ++  L    M    +  P        D LE      ++ 
Sbjct: 412 PDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  122 bits (308), Expect = 1e-29
 Identities = 96/538 (17%), Positives = 167/538 (31%), Gaps = 92/538 (17%)

Query: 98  AGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLD 157
              + L+      + L   +   E +++ +      + +E +    P +    R++    
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMP-VEAENVKSKTEYYNAWSEWERNAPPGNGE-QREMAVSR 64

Query: 158 LSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIG 217
           L     R                 L L +         +       HL+ L    N  + 
Sbjct: 65  LRDCLDR-------------QAHELELNNLGL------SSLPELPPHLESLVASCNS-LT 104

Query: 218 SLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYS 277
            LP    +L SL V +     L++            +E L +SNN  +    L    N S
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLE---KLPELQNSS 153

Query: 278 KLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVII 337
            LKI     N +  ++     SL       +  L          +P+   +   L  +  
Sbjct: 154 FLKIIDVDNNSL-KKLPDLPPSLE-FIAAGNNQLE--------ELPELQ-NLPFLTAIYA 202

Query: 338 SDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPV 397
            + N   + P        +L SI+  NN L     L   +   +  +    N L+  +P 
Sbjct: 203 DN-NSLKKLPDLP----LSLESIVAGNNILEELPELQ--NLPFLTTIYADNNLLK-TLPD 254

Query: 398 EIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY 457
                  +L  L +  N     +P       SL +LD+S N  +  + E       NL Y
Sbjct: 255 LPP----SLEALNVRDNYLT-DLPELPQ---SLTFLDVSENIFS-GLSELPP----NLYY 301

Query: 458 LLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSI 517
           L  S+N ++  L         L+ LN+  N  I  +P        L+ L  S N ++  +
Sbjct: 302 LNASSNEIR-SLCD---LPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHLA-EV 352

Query: 518 PTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLL 577
           P    N+  L    +  N L    P     ++ L +            L         L 
Sbjct: 353 PELPQNLKQLH---VEYNPLRE-FPDIPESVEDLRMNSH---------LAEVPELPQNLK 399

Query: 578 TLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635
            L +  N L    P+    +  LR   + +               KL      H++  
Sbjct: 400 QLHVETNPLR-EFPDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  114 bits (288), Expect = 4e-27
 Identities = 87/454 (19%), Positives = 158/454 (34%), Gaps = 83/454 (18%)

Query: 353 NNTNLRSIILANNSLSGPFRLPTRSR--KNIIALDISYNKLQGHIPVEIGKVL------- 403
           +NT L+  +  +++L+    +P  +   K+      ++++ + + P   G+         
Sbjct: 9   SNTFLQEPLRHSSNLT---EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 404 -----PNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL 458
                     L ++    + S+P        L  L  S N LT E+PE       +L   
Sbjct: 66  RDCLDRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQ-SLKSLLVD 119

Query: 459 LLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIP 518
             +  +L             L+ L +  N  +  +PE L N S L+ + + +N +   +P
Sbjct: 120 NNNLKALSD-------LPPLLEYLGVSNNQ-LEKLPE-LQNSSFLKIIDVDNNSLK-KLP 169

Query: 519 TWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLT 578
               ++ F+      +N LE     E   L +L  +    N++   P          L +
Sbjct: 170 DLPPSLEFIA---AGNNQLE--ELPELQNLPFLTAIYADNNSLKKLP-----DLPLSLES 219

Query: 579 LDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQI 638
           +   NN L       +  L  L  +   NN  +  +P     L+ L + D    +     
Sbjct: 220 IVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELP 276

Query: 639 PPCLDNTSLHREEGYYDLIPTYRN--EYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQP 696
                 T L   E  +  +        Y   S N   S+ +                   
Sbjct: 277 QSL---TFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL------------------ 315

Query: 697 LESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYN 756
             S+  L++S NKLI E+P+    L     L  S N+L   +P    NL+    L + YN
Sbjct: 316 PPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQNLK---QLHVEYN 367

Query: 757 NLTGKIPPRLVELNALAVFTVAHNNLSGKIPERI 790
            L  + P     +  L +     N+   ++PE  
Sbjct: 368 PLR-EFPDIPESVEDLRM-----NSHLAEVPELP 395

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  113 bits (285), Expect = 1e-26
 Identities = 104/590 (17%), Positives = 194/590 (32%), Gaps = 150/590 (25%)

Query: 200 CELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLIL 259
                LQE     ++ +  +P    N+ S    +   ++   N           + +  L
Sbjct: 8   VSNTFLQEPLRHSSN-LTEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRL 65

Query: 260 SNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDG 319
            +   +                                       Q   + L++ G S  
Sbjct: 66  RDCLDR---------------------------------------QAHELELNNLGLS-- 84

Query: 320 GTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRK 379
            ++P+   H   LE ++ S  N   E P        +L+S+++ NN+L     LP     
Sbjct: 85  -SLPELPPH---LESLVASC-NSLTELPELP----QSLKSLLVDNNNLKALSDLP----P 131

Query: 380 NIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQ 439
            +  L +S N+L+  +P E+      L  + +  N+    +P       SL ++   NNQ
Sbjct: 132 LLEYLGVSNNQLE-KLP-ELQN-SSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQ 184

Query: 440 LTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSN 499
           L  E+PE        L  +   NNSL+ +L         L+ +    N         L N
Sbjct: 185 LE-ELPEL--QNLPFLTAIYADNNSLK-KLPD---LPLSLESIVAGNNIL--EELPELQN 235

Query: 500 CSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKN 559
              L  +Y  +N +  ++P    ++  L+   + DN+L   +P     L +L++ +   +
Sbjct: 236 LPFLTTIYADNNLLK-TLPDLPPSLEALN---VRDNYLTD-LPELPQSLTFLDVSENIFS 290

Query: 560 NIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLC 619
            ++  P N        L  L+  +N +  ++         L  L ++NN    E+P    
Sbjct: 291 GLSELPPN--------LYYLNASSNEIR-SLC---DLPPSLEELNVSNNKLI-ELPALPP 337

Query: 620 QLQKLRLLDLSHNNFSGQIPPCLDN-TSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEK 678
           +L++L     S N+ + ++P    N   LH                  V YN        
Sbjct: 338 RLERL---IASFNHLA-EVPELPQNLKQLH------------------VEYN-------- 367

Query: 679 ETIDFTTKERSYTYKGQPLESIHGL-----DLSCNKLIGEIPSRIGELIRIHTLNLSRNN 733
                            PL     +     DL  N  + E+P     L     L++  N 
Sbjct: 368 -----------------PLREFPDIPESVEDLRMNSHLAEVPELPQNL---KQLHVETNP 407

Query: 734 LTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
           L    P    ++   E L ++   +           + L      H++  
Sbjct: 408 LR-EFPDIPESV---EDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  109 bits (275), Expect = 2e-25
 Identities = 85/471 (18%), Positives = 153/471 (32%), Gaps = 89/471 (18%)

Query: 47  PFQQLESLDLSGNNIAGCVENEGLEKL-SGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKN 105
             +Q   L+L+            L  L     +L+ L  S NS    +      L SL  
Sbjct: 69  LDRQAHELELNNLG---------LSSLPELPPHLESLVASCNSL-TELPELPQSLKSLLV 118

Query: 106 LSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRD 165
            +     L              LE L +S+N+++ L    + +    L+ +D+    ++ 
Sbjct: 119 DNNNLKALSDLP--------PLLEYLGVSNNQLEKL---PELQNSSFLKIIDVDNNSLKK 167

Query: 166 GSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLAN 225
                      PSL+ +   +N           L  L  L  +Y D+N  +  LP    +
Sbjct: 168 ------LPDLPPSLEFIAAGNNQL----EELPELQNLPFLTAIYADNNS-LKKLPDLPLS 216

Query: 226 LTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHF-QIPMSLEPFFNYSKLKIFHG 284
           L S+   +   N L E L    L +L  +  +   NN    +P           L+  + 
Sbjct: 217 LESIVAGN---NILEE-LPE--LQNLPFLTTIYADNNLLKTLPDLP------PSLEALNV 264

Query: 285 RENQIFGEIESSHSSLTPKF-QLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMR 343
           R+N +        + L      LT + +S++  S    + +      +L ++  S  N  
Sbjct: 265 RDNYL--------TDLPELPQSLTFLDVSENIFS---GLSELP---PNLYYLNASS-NEI 309

Query: 344 GEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVL 403
                       +L  + ++NN L     LP      +  L  S+N L   +P       
Sbjct: 310 RSLCDLP----PSLEELNVSNNKLI---ELPA-LPPRLERLIASFNHLA-EVPELPQ--- 357

Query: 404 PNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN 463
            NL  L + +N      P     +  L      N+ L  E+PE       NL+ L +  N
Sbjct: 358 -NLKQLHVEYNPLR-EFPDIPESVEDLR----MNSHLA-EVPELPQ----NLKQLHVETN 406

Query: 464 SLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDIS 514
                L         ++ L ++    +     +      L+      +   
Sbjct: 407 ----PLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 78.1 bits (193), Expect = 3e-15
 Identities = 54/332 (16%), Positives = 102/332 (30%), Gaps = 74/332 (22%)

Query: 474 INLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMP 533
           ++ T L+      ++ +  +P    N  S    Y + ++   + P   G    +    + 
Sbjct: 8   VSNTFLQEPLRHSSN-LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 534 DNHLEG------------PIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDL 581
           D                  +P       +LE L  S N++    L         LL  + 
Sbjct: 67  DCLDRQAHELELNNLGLSSLPEL---PPHLESLVASCNSL--TELPELPQSLKSLLVDNN 121

Query: 582 CNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPC 641
               L+   P        L YL ++NN  E ++P  L     L+++D+ +N+   ++P  
Sbjct: 122 NLKALSDLPPL-------LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDL 171

Query: 642 LDN-TSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESI 700
             +   +       + +P  +N                                  L  +
Sbjct: 172 PPSLEFIAAGNNQLEELPELQN----------------------------------LPFL 197

Query: 701 HGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG 760
             +    N L  ++P     L    ++    N L         NL  + ++    N L  
Sbjct: 198 TAIYADNNSLK-KLPDLPLSL---ESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK- 250

Query: 761 KIPPRLVELNALAVFTVAHNNLSGKIPERIAQ 792
            +P     L AL    V  N L+  +PE    
Sbjct: 251 TLPDLPPSLEAL---NVRDNYLT-DLPELPQS 278

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 71.2 bits (175), Expect = 5e-13
 Identities = 45/296 (15%), Positives = 94/296 (31%), Gaps = 66/296 (22%)

Query: 493 IPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE 552
           I     + + LQ      ++++  +P    N+          +  E   P    +   + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 553 ILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEG 612
           +  L                      L+L N  L+ ++P        L  L+ + N+   
Sbjct: 62  VSRLRDC------------LDRQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT- 104

Query: 613 EVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVG 672
           E+P     L+ L + + +    S  +PP L+   +              N+ + +     
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALS-DLPPLLEYLGVSN------------NQLEKL----- 146

Query: 673 PSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRN 732
           P +                        +  +D+  N L  ++P     L     +    N
Sbjct: 147 PELQN-------------------SSFLKIIDVDNNSLK-KLPDLPPSLE---FIAAGNN 183

Query: 733 NLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPE 788
            L   +P    NL  + ++    N+L  K+P   + L ++      +N L  ++PE
Sbjct: 184 QLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNILE-ELPE 232

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  117 bits (295), Expect = 5e-29
 Identities = 46/249 (18%), Positives = 95/249 (38%), Gaps = 15/249 (6%)

Query: 398 EIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY 457
           EI +         ++ ++   ++ S      ++  LDLS N L+ +I          LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 458 LLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSI 517
           L LS+N L         +L+ L+ L+L+ N+      + L    S++ L+ ++N+IS   
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVS 115

Query: 518 PTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLL 577
            +       +    + +N +      +      ++ LDL  N I         +    L 
Sbjct: 116 CSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 578 TLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQ 637
            L+L  N +  ++   +   ++L+ L L++N     +         +  + L +N     
Sbjct: 173 HLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-L 228

Query: 638 IPPCLDNTS 646
           I   L  + 
Sbjct: 229 IEKALRFSQ 237

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  115 bits (291), Expect = 2e-28
 Identities = 67/396 (16%), Positives = 114/396 (28%), Gaps = 95/396 (23%)

Query: 419 SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTK 478
           +I     + N      ++++ L  +    L    +N++ L LS N L     +     TK
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 479 LKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLE 538
           L+ LNL  N  +    + L + S+L+ L +++N +                         
Sbjct: 60  LELLNLSSNV-LYETLD-LESLSTLRTLDLNNNYVQ------------------------ 93

Query: 539 GPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLS 598
                E      +E L  + NNI+    +           + L NN++        G  S
Sbjct: 94  -----ELLVGPSIETLHAANNNISRVSCS-RGQG---KKNIYLANNKITMLRDLDEGCRS 144

Query: 599 QLRYLILANNNFEG-EVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLI 657
           +++YL L  N  +             L  L+L +N     +   +    L          
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKT-------- 195

Query: 658 PTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSR 717
                                                        LDLS NKL   +   
Sbjct: 196 ---------------------------------------------LDLSSNKLA-FMGPE 209

Query: 718 IGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTV 777
                 +  ++L  N L   I       + +E  DL  N        R        V TV
Sbjct: 210 FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTV 267

Query: 778 AHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLP 813
           A   +  K+  +  +  T     + G       P P
Sbjct: 268 AKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAP 302

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  115 bits (290), Expect = 3e-28
 Identities = 67/411 (16%), Positives = 119/411 (28%), Gaps = 102/411 (24%)

Query: 225 NLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHG 284
           N    ++  V D+ L +   +S      +++ L LS N                      
Sbjct: 8   NGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGN---------------------- 44

Query: 285 RENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRG 344
                                L+ IS               L     LE + +S  N+  
Sbjct: 45  --------------------PLSQIS------------AADLAPFTKLELLNLSS-NVLY 71

Query: 345 EFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLP 404
           E     LE+ + LR++ L NN +      P     +I  L  + N +   +         
Sbjct: 72  ETLD--LESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNIS-RVSCSR---GQ 120

Query: 405 NLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNS 464
               + ++ N          G  + + YLDL  N++       LA     LE+L L  N 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 465 LQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNI 524
           +       ++   KLK L+L  N  +  +     + + +  + + +N +           
Sbjct: 181 IYD--VKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVL--------- 228

Query: 525 SFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNN 584
                           I         LE  DL  N      L   FSK   + T+     
Sbjct: 229 ----------------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

Query: 585 RLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635
           +    +         +  L         ++P         RL+ L H++  
Sbjct: 273 K---KLTGQNEEECTVPTLGHYGAYCCEDLPAPFA----DRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (281), Expect = 3e-27
 Identities = 48/274 (17%), Positives = 101/274 (36%), Gaps = 24/274 (8%)

Query: 40  LNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAG 99
           ++ +   PF +LE L+LS N +           L  LS L+ LDL++N      +  L  
Sbjct: 49  ISAADLAPFTKLELLNLSSNVL------YETLDLESLSTLRTLDLNNNY-----VQELLV 97

Query: 100 LSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLS 159
             S++ L  A N +   +           + + +++N+I  L    D     ++++LDL 
Sbjct: 98  GPSIETLHAANNNIS-RV---SCSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLK 152

Query: 160 GLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSL 219
              I   +       S  +L+ L L+ N     +   +G    A L+ L +  N  +  +
Sbjct: 153 LNEIDTVNF-AELAASSDTLEHLNLQYNF----IYDVKGQVVFAKLKTLDLSSNK-LAFM 206

Query: 220 PWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKL 279
                +   +  + + +N+L   +  + L    ++E   L  N F      + F    ++
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264

Query: 280 KIFHGRENQIFGEIESSHSSLTPKFQLTSISLSD 313
           +    +  +          ++       +    D
Sbjct: 265 QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (263), Expect = 8e-25
 Identities = 50/267 (18%), Positives = 98/267 (36%), Gaps = 32/267 (11%)

Query: 49  QQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSL 108
            + +   ++ +++   + +          N+K LDLS N  +    + LA  + L+ L+L
Sbjct: 10  NRYKIEKVTDSSLKQALASL----RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 109 AYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSK 168
           + N L       +L+SLS L  LD+++N +  L           +  L  +   I     
Sbjct: 66  SSNVLY---ETLDLESLSTLRTLDLNNNYVQEL------LVGPSIETLHAANNNISRV-- 114

Query: 169 VLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIG-SLPWCLANLT 227
              S       K +YL +N    T+         + +Q L +  N+    +     A+  
Sbjct: 115 ---SCSRGQGKKNIYLANNKI--TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 228 SLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEP-FFNYSKLKIFHGRE 286
           +L  L++  N +         +    ++ L LS+N       + P F + + +     R 
Sbjct: 170 TLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLA---FMGPEFQSAAGVTWISLRN 223

Query: 287 NQIFGEIESSHSSLTPKFQLTSISLSD 313
           N++   IE +         L    L  
Sbjct: 224 NKL-VLIEKALRFSQ---NLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (252), Expect = 2e-23
 Identities = 53/292 (18%), Positives = 108/292 (36%), Gaps = 28/292 (9%)

Query: 76  LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSD 135
            +  K   ++ +S   ++ S      ++K L L+ N L   I+  +L   + LE L++S 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 136 NEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTT 195
           N +       D   L  LR LDL+   ++        +   PS++TL+  +NN ++   +
Sbjct: 68  NVLYET---LDLESLSTLRTLDLNNNYVQ-------ELLVGPSIETLHAANNNISRVSCS 117

Query: 196 TQGLCELAHLQELYIDHNDFIGSLPWC-LANLTSLRVLHVPDNQLTENLSSSPLMHLTSI 254
                     + +Y+ +N  I  L        + ++ L +  N++     +       ++
Sbjct: 118 R-----GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 255 ELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDH 314
           E L L  N       ++    ++KLK      N++   +     S      +T ISL ++
Sbjct: 172 EHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAA---GVTWISLRNN 224

Query: 315 GDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNS 366
                  I K L    +LE   +                N  ++++      
Sbjct: 225 KLV---LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 50/365 (13%), Positives = 111/365 (30%), Gaps = 77/365 (21%)

Query: 120 EELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSL 179
           E   + +  +   ++D+ +    +    +    ++ LDLSG  +   S     +  F  L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISA--ADLAPFTKL 60

Query: 180 KTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQL 239
           + L L SN        T  L  L+ L+ L +++N  +  L        S+  LH  +N +
Sbjct: 61  ELLNLSSNVL----YETLDLESLSTLRTLDLNNNY-VQELL----VGPSIETLHAANNNI 111

Query: 240 TENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSS 299
           +              + + L+NN   +   L+     S+++    + N+I          
Sbjct: 112 S----RVSCSRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEI---------- 156

Query: 300 LTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRS 359
                   +++                                     + L  ++  L  
Sbjct: 157 -------DTVN------------------------------------FAELAASSDTLEH 173

Query: 360 IILANNSLSGPFRLPTRSR-KNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNG 418
           + L  N +     +  +     +  LD+S NKL   +  E       + ++++  N    
Sbjct: 174 LNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQS-AAGVTWISLRNNKLV- 227

Query: 419 SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTK 478
            I  +     +L + DL  N                ++ +             ++  +  
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 479 LKRLN 483
           L    
Sbjct: 288 LGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 53/288 (18%), Positives = 93/288 (32%), Gaps = 28/288 (9%)

Query: 541 IPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQL 600
           I       +  +I  ++ +++              +  LDL  N L+      +   ++L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 601 RYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTY 660
             L L++N     + L    L  LR LDL++N    ++       +LH            
Sbjct: 61  ELLNLSSNVLYETLDLE--SLSTLRTLDLNNNYVQ-ELLVGPSIETLH----------AA 107

Query: 661 RNEYDIVSYNVGPSMGEKETIDFT----TKERSYTYKGQPLESIHGLDLSCNKLIG-EIP 715
            N    VS + G      + I       T  R           +  LDL  N++      
Sbjct: 108 NNNISRVSCSRGQGK---KNIYLANNKITMLRDLDEGC--RSRVQYLDLKLNEIDTVNFA 162

Query: 716 SRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVF 775
                   +  LNL  N +   +        ++++LDLS N L   + P       +   
Sbjct: 163 ELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI 219

Query: 776 TVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENRSST 823
           ++ +N L   I + +      +     GN F CG          R  T
Sbjct: 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  119 bits (301), Expect = 3e-28
 Identities = 95/457 (20%), Positives = 172/457 (37%), Gaps = 34/457 (7%)

Query: 77  SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDN 136
              K L LS NS +   +  ++ LS L+ L L++NR+  S++        +LE LD+S N
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110

Query: 137 EIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTLYLKSNNFAK-- 191
            + N+        +  LR LDLS         VL     F     L  L L +  F +  
Sbjct: 111 RLQNI--SCC--PMASLRHLDLSFNDF----DVLPVCKEFGNLTKLTFLGLSAAKFRQLD 162

Query: 192 --TVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLT--ENLSSSP 247
              V      C L  L   +I   +        + N T L ++  P++  +   N+S + 
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGET---ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNA 219

Query: 248 LMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLT 307
           L HL    + +   N  ++   L        L     +  +   +             + 
Sbjct: 220 LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279

Query: 308 SISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRG--EFPSWLLENNTNLRSIILANN 365
            +++ +   ++     +F Y +  L+ ++I  V  +        L      +   +L+ +
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339

Query: 366 SLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFG 425
                  +   S  +   L+ + N        +    L  L  L +  N    +      
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLK-NFFKVAL 397

Query: 426 ---DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLT-KLKR 481
              +M+SL  LD+S N L     +       ++  L LS+N L G +F     L  K+K 
Sbjct: 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC---LPPKVKV 454

Query: 482 LNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIP 518
           L+L  N  I  IP+ +++  +LQ L ++ N +  S+P
Sbjct: 455 LDLHNNR-IMSIPKDVTHLQALQELNVASNQLK-SVP 489

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  102 bits (256), Expect = 8e-23
 Identities = 95/493 (19%), Positives = 170/493 (34%), Gaps = 73/493 (14%)

Query: 40  LNFSLFTPFQQLESLDLSGNNIAGCVENEGLEK--LSGLSNLKFLDLSHNSFNNSVLSSL 97
           L     +   +L  L LS N I        L+        +L++LD+SHN      L ++
Sbjct: 67  LRMPDISFLSELRVLRLSHNRI------RSLDFHVFLFNQDLEYLDVSHNR-----LQNI 115

Query: 98  --AGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRF 155
               ++SL++L L++N  +     +E  +L+ L  L +S  +   L +            
Sbjct: 116 SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCIL 175

Query: 156 LDLSGLRIRDGSKVLHSIGSFPSLKTLYLK---SNNFAKTVTTTQGLCELAHLQELYIDH 212
           LDL    I+ G        S     T  L      N   +V     +  L HLQ   I  
Sbjct: 176 LDLVSYHIKGG-----ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230

Query: 213 NDF----IGSLPWCLANLTSLRVLHVPDNQLTENLSSSPL--MHLTSIELLILSNNHFQI 266
           ND     + +    L    +L  + +   + T   S           +E L + N     
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290

Query: 267 PMSLEPFFNYS----KLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTI 322
            +  E F         L I H +        E+ +S      ++    LS          
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA---EMNIKMLS---------- 337

Query: 323 PKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNII 382
                         ISD             + ++   +    N  +        + K + 
Sbjct: 338 --------------ISDTPF---IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ 380

Query: 383 ALDISYNKLQGHIPVEIGKV--LPNLGFLTISFNAF-NGSIPSSFGDMNSLIYLDLSNNQ 439
            L +  N L+ +          + +L  L +S N+  + +   +     S++ L+LS+N 
Sbjct: 381 TLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439

Query: 440 LTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPE-SLS 498
           LTG +   L      ++ L L NN +   +     +L  L+ LN+  N  +  +P+    
Sbjct: 440 LTGSVFRCLPP---KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ-LKSVPDGVFD 494

Query: 499 NCSSLQGLYISDN 511
             +SLQ +++ DN
Sbjct: 495 RLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 92.2 bits (229), Expect = 2e-19
 Identities = 78/450 (17%), Positives = 151/450 (33%), Gaps = 34/450 (7%)

Query: 203 AHLQELYIDHNDFIGSL-PWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSN 261
              + L +  N  I  L    ++ L+ LRVL +  N++   L     +    +E L +S+
Sbjct: 52  PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSH 109

Query: 262 NHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSH-SSLTPKFQLTSISLSD----HGD 316
           N  Q   ++      + L+      N            +LT   +LT + LS       D
Sbjct: 110 NRLQ---NI-SCCPMASLRHLDLSFNDFDVLPVCKEFGNLT---KLTFLGLSAAKFRQLD 162

Query: 317 SDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTR 376
                          L    I      GE  S  + N T L  +   N+  S    +   
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIK----GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN 218

Query: 377 SRKNIIALDISYNKLQ-GHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMN-----SL 430
           +  ++   +I  N      +   + ++      L ++      +   S           +
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278

Query: 431 IYLDLSNNQLTGEIPEHLAMGCFN----LEYLLLSNNSLQGQLFSKKINLTKLKRLNLDG 486
            YL++ N  +T  I              L    + N        +      ++    L  
Sbjct: 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338

Query: 487 NHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLE--GPIPSE 544
           +           + SS   L  + N  + S+      +  L  +I+  N L+    +   
Sbjct: 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM 398

Query: 545 FCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLI 604
              +  LE LD+S N++     +   +    +L L+L +N L G++   +    +++ L 
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLD 456

Query: 605 LANNNFEGEVPLRLCQLQKLRLLDLSHNNF 634
           L NN     +P  +  LQ L+ L+++ N  
Sbjct: 457 LHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 84.5 bits (209), Expect = 5e-17
 Identities = 76/430 (17%), Positives = 137/430 (31%), Gaps = 52/430 (12%)

Query: 347 PSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNL 406
              +   N +L  + +++N L     +      ++  LD+S+N        +    L  L
Sbjct: 92  DFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKL 148

Query: 407 GFLTISFNAFNGSIPSSFGDMN-SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSL 465
            FL +S   F          ++ S I LDL +  + G   E L +    + +L+   NSL
Sbjct: 149 TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208

Query: 466 QG-QLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCS---------SLQGLYISDNDISG 515
              Q+      L  L+  N+  N        +  +           +LQ +  +      
Sbjct: 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268

Query: 516 SIPT-WMGNISFLDAIIMPDNHLEGPIPSEF-----CQLDYLEILDLSKNNIAGRPLNGA 569
                W   + +L+   + +  +   I  E        L  L I  +             
Sbjct: 269 LFQFFWPRPVEYLN---IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK-EAL 324

Query: 570 FSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDL 629
           +S  + +    L  +             S   +L    N F   V      L++L+ L L
Sbjct: 325 YSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384

Query: 630 SHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERS 689
             N            T         D+           S N   S     T         
Sbjct: 385 QRNGLK-NFFKVALMTKNMSSLETLDV-----------SLNSLNSHAYDRTC-------- 424

Query: 690 YTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVE 749
                   ESI  L+LS N L G +   +    ++  L+L  N +  +IP   ++L+ ++
Sbjct: 425 -----AWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM-SIPKDVTHLQALQ 476

Query: 750 SLDLSYNNLT 759
            L+++ N L 
Sbjct: 477 ELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.1 bits (200), Expect = 5e-16
 Identities = 73/401 (18%), Positives = 134/401 (33%), Gaps = 47/401 (11%)

Query: 384 LDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 443
           +D S   L  H+P ++    P    L++S N+ +         ++ L  L LS+N++   
Sbjct: 36  VDYSNRNLT-HVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-S 90

Query: 444 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIG-GIPESLSNCSS 502
           +  H+ +   +LEYL +S+N LQ         +  L+ L+L  N F    + +   N + 
Sbjct: 91  LDFHVFLFNQDLEYLDVSHNRLQNISCCP---MASLRHLDLSFNDFDVLPVCKEFGNLTK 147

Query: 503 LQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIA 562
           L  L +S       +   +  ++ L                    L  +  LDL   +I 
Sbjct: 148 LTFLGLSAAKFR-QLD--LLPVAHL-------------------HLSCIL-LDLVSYHIK 184

Query: 563 GRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQ 622
           G          + +L L    N L     N    ++ L +L L+N     E   RL    
Sbjct: 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVN--MSVNALGHLQLSNIKLNDENCQRLMTFL 242

Query: 623 KLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETID 682
                  +  N + Q        S+   + ++     Y N Y++             TI 
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL-------------TIT 289

Query: 683 FTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTF 742
                  +TY    L+S+    +     +    +       ++   LS ++      V  
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP 349

Query: 743 SNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
            +      L+ + N  T  +      L  L    +  N L 
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 76.8 bits (189), Expect = 1e-14
 Identities = 75/427 (17%), Positives = 141/427 (33%), Gaps = 47/427 (11%)

Query: 384 LDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 443
           L +S N +   + +     L  L  L +S N         F     L YLD+S+N+L   
Sbjct: 57  LSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-N 114

Query: 444 IPEHLAMGCFNLEYLLLSNNSLQ----GQLFSKKINLTKLKRLNLDGNHFIGGIPESLSN 499
           I         +L +L LS N        + F    NLTKL  L L    F       +++
Sbjct: 115 ISCCPMA---SLRHLDLSFNDFDVLPVCKEFG---NLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 500 ------CSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEI 553
                    L   +I   +        + N + L  +  P++     +      L +L++
Sbjct: 169 LHLSCILLDLVSYHIKGGETESL---QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 554 LDLSKNNIAG---RPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRL---SQLRYLILAN 607
            ++  N+             ++   LL + L +          + +      + YL + N
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 608 NNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPT------YR 661
                 +        +  L  L   +         +   L  +E  Y +           
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVK-------NQVFLFSKEALYSVFAEMNIKMLSI 338

Query: 662 NEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQP--LESIHGLDLSCNKL--IGEIPSR 717
           ++   +     PS      ++FT    + +       L+ +  L L  N L    ++   
Sbjct: 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM 398

Query: 718 IGELIRIHTLNLSRNNLT-GTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFT 776
              +  + TL++S N+L       T +    +  L+LS N LTG +   L     + V  
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLD 456

Query: 777 VAHNNLS 783
           + +N + 
Sbjct: 457 LHNNRIM 463

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 74.5 bits (183), Expect = 6e-14
 Identities = 50/260 (19%), Positives = 101/260 (38%), Gaps = 45/260 (17%)

Query: 11  QWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNI----AGCVE 66
           +        + + + ++ +  +     L+   +L++ F ++    LS ++       C  
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC-- 348

Query: 67  NEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG-SINIEELDSL 125
                     S+  FL+ + N F +SV    + L  L+ L L  N L+          ++
Sbjct: 349 ------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM 402

Query: 126 SNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLK 185
           S+LE LD+S N +++    +       +  L+LS                          
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS-------------------------- 436

Query: 186 SNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSS 245
           SN    +V      C    ++ L + +N  I S+P  + +L +L+ L+V  NQL  ++  
Sbjct: 437 SNMLTGSVFR----CLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLK-SVPD 490

Query: 246 SPLMHLTSIELLILSNNHFQ 265
                LTS++ + L +N + 
Sbjct: 491 GVFDRLTSLQYIWLHDNPWD 510

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  119 bits (299), Expect = 5e-28
 Identities = 60/332 (18%), Positives = 121/332 (36%), Gaps = 39/332 (11%)

Query: 51  LESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAY 110
           +         I      + +      +     +L   S  +    +   L+S+  +    
Sbjct: 1   MGETITVSTPI------KQIFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANN 52

Query: 111 NRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVL 170
           + ++   +++ +  L N+  L ++ N++ ++   K    L+ L +L L   +I+D    L
Sbjct: 53  SDIK---SVQGIQYLPNVTKLFLNGNKLTDI---KPLTNLKNLGWLFLDENKIKD----L 102

Query: 171 HSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLR 230
            S+     LK+L L+ N     ++   GL  L  L+ LY+ +N  I  +   L+ LT L 
Sbjct: 103 SSLKDLKKLKSLSLEHNG----ISDINGLVHLPQLESLYLGNNK-ITDIT-VLSRLTKLD 156

Query: 231 VLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIF 290
            L + DNQ++      PL  LT ++ L LS NH      L        L +      +  
Sbjct: 157 TLSLEDNQIS---DIVPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECL 210

Query: 291 GEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWL 350
            +  +  S+L       ++  +D      G++          ++   +      EF + +
Sbjct: 211 NKPINHQSNLV---VPNTVKNTD------GSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 261

Query: 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNII 382
                   +I  A     G    P +    + 
Sbjct: 262 SFIFYQPVTIGKAKARFHGRVTQPLKEVYTVS 293

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  115 bits (290), Expect = 5e-27
 Identities = 50/255 (19%), Positives = 96/255 (37%), Gaps = 25/255 (9%)

Query: 29  LLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNS 88
            +  N+      +         ++ +  + ++I      + ++ +  L N+  L L+ N 
Sbjct: 23  TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI------KSVQGIQYLPNVTKLFLNGN- 75

Query: 89  FNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYR 148
              + +  L  L +L  L L  N+++   ++  L  L  L+ L +  N I ++       
Sbjct: 76  -KLTDIKPLTNLKNLGWLFLDENKIK---DLSSLKDLKKLKSLSLEHNGISDI---NGLV 128

Query: 149 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQEL 208
            L +L  L L   +I D    +  +     L TL L+ N     ++    L  L  LQ L
Sbjct: 129 HLPQLESLYLGNNKITD----ITVLSRLTKLDTLSLEDNQ----ISDIVPLAGLTKLQNL 180

Query: 209 YIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPM 268
           Y+  N  I  L   LA L +L VL +   +   N   +   +L     +  ++     P 
Sbjct: 181 YLSKNH-ISDLR-ALAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSLVTPE 237

Query: 269 SLEPFFNYSKLKIFH 283
            +    +Y K  +  
Sbjct: 238 IISDDGDYEKPNVKW 252

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  114 bits (287), Expect = 1e-26
 Identities = 54/300 (18%), Positives = 110/300 (36%), Gaps = 28/300 (9%)

Query: 48  FQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLS 107
           F +    +L   ++            + L+++  +  +++   +  +  +  L ++  L 
Sbjct: 20  FAETIKDNLKKKSV------TDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 71

Query: 108 LAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGS 167
           L  N+L    +I+ L +L NL  L + +N+I +L   KD   L+KL+ L L    I D  
Sbjct: 72  LNGNKLT---DIKPLTNLKNLGWLFLDENKIKDLSSLKD---LKKLKSLSLEHNGISD-- 123

Query: 168 KVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLT 227
             ++ +   P L++LYL +N     +T    L  L  L  L ++ N  I  +   LA LT
Sbjct: 124 --INGLVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQ-ISDIV-PLAGLT 175

Query: 228 SLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGREN 287
            L+ L++  N ++       L  L ++++L L +        +    N          + 
Sbjct: 176 KLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKP-INHQSNLVVPNTVKNTDG 231

Query: 288 QIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFP 347
            +      S      K  +         +            +    F       ++  + 
Sbjct: 232 SLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYT 291

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  109 bits (273), Expect = 7e-25
 Identities = 51/237 (21%), Positives = 88/237 (37%), Gaps = 22/237 (9%)

Query: 29  LLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNS 88
           +  +   ++   +         +  L L+GN +        ++ L+ L NL +L L  N 
Sbjct: 45  IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL------TDIKPLTNLKNLGWLFLDENK 98

Query: 89  FNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYR 148
             +  LSSL  L  LK+LSL +N +    +I  L  L  LE L + +N+I ++       
Sbjct: 99  IKD--LSSLKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDI---TVLS 150

Query: 149 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQEL 208
            L KL  L L   +I D    +  +     L+ LYL  N+    ++  + L  L +L  L
Sbjct: 151 RLTKLDTLSLEDNQISD----IVPLAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVL 202

Query: 209 YIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQ 265
            +   + +       +NL     +   D  L      S         +         
Sbjct: 203 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTN 259

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.2 bits (197), Expect = 1e-15
 Identities = 65/420 (15%), Positives = 127/420 (30%), Gaps = 38/420 (9%)

Query: 357 LRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAF 416
           +   I  +  +   F     +    I  ++    +   +       L ++  +  + +  
Sbjct: 1   MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDI 55

Query: 417 NGSIPSSFGDMNSLIYLDLSNNQLTGEIP-EHLAMGCFNLEYLLLSNNSLQGQLFSKKI- 474
             S+      + ++  L L+ N+LT   P  +L     NL +L L  N +      K + 
Sbjct: 56  K-SV-QGIQYLPNVTKLFLNGNKLTDIKPLTNLK----NLGWLFLDENKI------KDLS 103

Query: 475 ---NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAII 531
              +L KLK L+L+ N  I  I   L +   L+ LY+ +N I+  I   +  ++ LD + 
Sbjct: 104 SLKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLS 159

Query: 532 MPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP 591
           + DN +          L  L+ L LSKN+I+      A +    L  L+L +        
Sbjct: 160 LEDNQISDI--VPLAGLTKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECLNKPI 214

Query: 592 NWMGRLSQLRYLILANNNFEGEVPL-------RLCQLQKLRLLDLSHNNFSGQIPPCLDN 644
           N    L     +   + +      +       +      L       +    Q       
Sbjct: 215 NHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKA 274

Query: 645 TSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLD 704
            +         L   Y   YD+    +   +     I          Y  +   +     
Sbjct: 275 KARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGG 334

Query: 705 LSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPP 764
              N     +      L  +     +   +  T  V +             +N   +   
Sbjct: 335 HEWNFNTDYMSGNDFTLYAVFKAETTEKTVNLTRYVKYIRGNAGIYKLPREDNSLKQGTL 394

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.5 bits (172), Expect = 1e-12
 Identities = 43/205 (20%), Positives = 79/205 (38%), Gaps = 15/205 (7%)

Query: 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLT 410
           ++   N+  + L  N L+    L   + KN+  L +  NK++    ++    L  L  L+
Sbjct: 61  IQYLPNVTKLFLNGNKLTDIKPL--TNLKNLGWLFLDENKIKDLSSLKD---LKKLKSLS 115

Query: 411 ISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLF 470
           +  N  +  I +    +  L  L L NN++T      L+     L+ L L +N +     
Sbjct: 116 LEHNGIS-DI-NGLVHLPQLESLYLGNNKIT--DITVLS-RLTKLDTLSLEDNQISD--I 168

Query: 471 SKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAI 530
                LTKL+ L L  NH I  +  +L+   +L  L +   +          N+   + +
Sbjct: 169 VPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 531 IMPDNHLEGPIP-SEFCQLDYLEIL 554
              D  L  P   S+    +   + 
Sbjct: 227 KNTDGSLVTPEIISDDGDYEKPNVK 251

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.4 bits (143), Expect = 4e-09
 Identities = 51/349 (14%), Positives = 108/349 (30%), Gaps = 73/349 (20%)

Query: 479 LKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLE 538
           +          I  I       +      +    ++        +    +          
Sbjct: 1   MGETITVSTP-IKQI-FPDDAFAETIKDNLKKKSVT--------DAVTQN---------- 40

Query: 539 GPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLS 598
                   +L+ ++ +  + ++I  + + G       +  L L  N+L  +I   +  L 
Sbjct: 41  --------ELNSIDQIIANNSDI--KSVQG-IQYLPNVTKLFLNGNKLT-DIKP-LTNLK 87

Query: 599 QLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIP 658
            L +L L  N  +      L  L+KL+ L L HN  S  I   +    L           
Sbjct: 88  NLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-DINGLVHLPQL----------- 133

Query: 659 TYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRI 718
               E   +  N      +   I   ++          L  +  L L  N+ I +I   +
Sbjct: 134 ----ESLYLGNN------KITDITVLSR----------LTKLDTLSLEDNQ-ISDIVP-L 171

Query: 719 GELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA 778
             L ++  L LS+N+++       + L+ ++ L+L       K       L         
Sbjct: 172 AGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229

Query: 779 HNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENRSSTEAST 827
             +L    PE I+    +++ + + +       +  I  +  +  +A  
Sbjct: 230 DGSL--VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKA 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  114 bits (288), Expect = 7e-28
 Identities = 67/291 (23%), Positives = 118/291 (40%), Gaps = 31/291 (10%)

Query: 356 NLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNA 415
           +LR +  ++  L    ++P     +   LD+  NK+   I     K L NL  L +  N 
Sbjct: 32  HLRVVQCSDLGLE---KVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK 87

Query: 416 FNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF-NLEYLLLSNN---SLQGQLFS 471
            +   P +F  +  L  L LS NQL  E+PE +       L+ L +  N    ++  +F+
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM----PKTLQELRVHENEITKVRKSVFN 142

Query: 472 KKINLTKLKRLNLDGNHF-IGGIPE-SLSNCSSLQGLYISDNDISGSIPTWM-GNISFLD 528
               L ++  + L  N     GI   +      L  + I+D +I+ +IP  +  +++ L 
Sbjct: 143 ---GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELH 198

Query: 529 AIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNG 588
              +  N +     +    L+ L  L LS N+I+    NG+ +   +L  L L NN+L  
Sbjct: 199 ---LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNNKLV- 253

Query: 589 NIPNWMGRLSQLRYLILANNNFEG------EVPLRLCQLQKLRLLDLSHNN 633
            +P  +     ++ + L NNN           P    +      + L  N 
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  102 bits (257), Expect = 8e-24
 Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 22/224 (9%)

Query: 45  FTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAG--LSS 102
           F   + L +L L  N I+           + L  L+ L LS N      L  L      +
Sbjct: 72  FKNLKNLHTLILINNKISKISPGA----FAPLVKLERLYLSKNQ-----LKELPEKMPKT 122

Query: 103 LKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDY-RGLRKLRFLDLSGL 161
           L+ L +  N +   +     + L+ +  +++  N + +  +     +G++KL ++ ++  
Sbjct: 123 LQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 162 RIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPW 221
            I    +     G  PSL  L+L  N    T      L  L +L +L +  N        
Sbjct: 182 NITTIPQ-----GLPPSLTELHLDGNKI--TKVDAASLKGLNNLAKLGLSFNSISAVDNG 234

Query: 222 CLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQ 265
            LAN   LR LH+ +N+L +      L     I+++ L NN+  
Sbjct: 235 SLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  101 bits (253), Expect = 2e-23
 Identities = 43/249 (17%), Positives = 90/249 (36%), Gaps = 28/249 (11%)

Query: 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLT 410
                 L  + L+ N L     LP +  K +  L +  N++   +   +   L  +  + 
Sbjct: 96  FAPLVKLERLYLSKNQLK---ELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVE 151

Query: 411 ISFNAFNGSI--PSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF-NLEYLLLSNN---S 464
           +  N    S     +F  M  L Y+ +++  +T      +  G   +L  L L  N    
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-----TIPQGLPPSLTELHLDGNKITK 206

Query: 465 LQGQLFSKKINLTKLKRLNLDGNHFIGGIPE-SLSNCSSLQGLYISDNDISGSIPTWMGN 523
           +          L  L +L L  N  I  +   SL+N   L+ L++++N +   +P  + +
Sbjct: 207 VDAASLK---GLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261

Query: 524 ISFLDAIIMPDNHLEGPIPSEFCQ------LDYLEILDLSKNNIAGRPL-NGAFSKCSYL 576
             ++  + + +N++     ++FC             + L  N +    +    F      
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 577 LTLDLCNNR 585
             + L N +
Sbjct: 322 AAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 99.3 bits (248), Expect = 1e-22
 Identities = 73/347 (21%), Positives = 116/347 (33%), Gaps = 98/347 (28%)

Query: 429 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKINLTKLKRLNLD 485
               LDL NN++T EI +       NL  L+L NN    +    F+    L KL+RL L 
Sbjct: 53  DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFA---PLVKLERLYLS 108

Query: 486 GNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEF 545
            N  +  +PE +    +LQ L + +N+I+  +                         S F
Sbjct: 109 KNQ-LKELPEKMP--KTLQELRVHENEIT-KVR-----------------------KSVF 141

Query: 546 CQLDYLEILDLSKNNIAGRPL-NGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLI 604
             L+ + +++L  N +    + NGAF     L  + + +  +   IP   G    L  L 
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELH 198

Query: 605 LANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEY 664
           L  N         L  L  L  L LS N+ S      +DN SL                 
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSIS-----AVDNGSL----------------- 236

Query: 665 DIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRI 724
                                              +  L L+ NKL+ ++P  + +   I
Sbjct: 237 ------------------------------ANTPHLRELHLNNNKLV-KVPGGLADHKYI 265

Query: 725 HTLNLSRNNLTG------TIPVTFSNLRQVESLDLSYNNLT-GKIPP 764
             + L  NN++         P   +       + L  N +   +I P
Sbjct: 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 98.1 bits (245), Expect = 2e-22
 Identities = 59/295 (20%), Positives = 106/295 (35%), Gaps = 58/295 (19%)

Query: 355 TNLRSIILANNSLS----GPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLT 410
            NL ++IL NN +S    G F         +  L +S N+L+  +P +   +   L  L 
Sbjct: 76  KNLHTLILINNKISKISPGAFA----PLVKLERLYLSKNQLK-ELPEK---MPKTLQELR 127

Query: 411 ISFNAFNGSIPSSFGDMNSLIYLDLSNNQLT-GEIPEHLAMGCFNLEYLLLSNN---SLQ 466
           +  N       S F  +N +I ++L  N L    I      G   L Y+ +++    ++ 
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187

Query: 467 GQLFSKKINLTKLKRLNLDGNHFIGGIPE-SLSNCSSLQGLYISDNDISGSIPTWMGNIS 525
             L         L  L+LDGN  I  +   SL   ++L  L +S N IS ++        
Sbjct: 188 QGLPPS------LTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSIS-AVD------- 232

Query: 526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNR 585
                                   +L  L L+ N +   P  G  +   Y+  + L NN 
Sbjct: 233 ----------------NGSLANTPHLRELHLNNNKLVKVP--GGLADHKYIQVVYLHNNN 274

Query: 586 LNG------NIPNWMGRLSQLRYLILANNNFE-GEVPLRLCQ-LQKLRLLDLSHN 632
           ++         P +  + +    + L +N  +  E+     + +     + L + 
Sbjct: 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.4 bits (243), Expect = 4e-22
 Identities = 45/230 (19%), Positives = 86/230 (37%), Gaps = 35/230 (15%)

Query: 48  FQQLESLDLSGNNIAGCVENEGLEK--LSGLSNLKFLDLSHNSFNNSVLSSLA--GLSSL 103
            + L+ L +  N I        + K   +GL+ +  ++L  N   +S + + A  G+  L
Sbjct: 120 PKTLQELRVHENEI------TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173

Query: 104 KNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRI 163
             + +A   +  +I         +L  L +  N+I   V     +GL  L  L LS   I
Sbjct: 174 SYIRIADTNIT-TI---PQGLPPSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSI 228

Query: 164 RDGSKVLHSIGSF---PSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP 220
                 + + GS    P L+ L+L +N          GL +  ++Q +Y+ +N+ I ++ 
Sbjct: 229 SA----VDN-GSLANTPHLRELHLNNNKLV---KVPGGLADHKYIQVVYLHNNN-ISAIG 279

Query: 221 -------WCLANLTSLRVLHVPDNQLT-ENLSSSPLMHLTSIELLILSNN 262
                         S   + +  N +    +  S    +     + L N 
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 47/235 (20%), Positives = 85/235 (36%), Gaps = 33/235 (14%)

Query: 77  SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDN 136
            +   LDL +N            L +L  L L  N++   I+      L  LE L +S N
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 110

Query: 137 EIDNL-------------------VVPKD-YRGLRKLRFLDLSGLRIRDGSKVLHSIGSF 176
           ++  L                    V K  + GL ++  ++L    ++       +    
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 177 PSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP-WCLANLTSLRVLHVP 235
             L  + +   N     T  QGL     L EL++D N  I  +    L  L +L  L + 
Sbjct: 171 KKLSYIRIADTNIT---TIPQGL--PPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLS 224

Query: 236 DNQLTENLSSSPLMHLTSIELLILSNNHFQ-IPMSLEPFFNYSKLKIFHGRENQI 289
            N ++  + +  L +   +  L L+NN    +P       ++  +++ +   N I
Sbjct: 225 FNSIS-AVDNGSLANTPHLRELHLNNNKLVKVP---GGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.0 bits (203), Expect = 7e-17
 Identities = 59/349 (16%), Positives = 110/349 (31%), Gaps = 66/349 (18%)

Query: 153 LRFLDLSGLRIRDGSKVLHSI--GSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYI 210
           LR +  S L        L  +     P    L L++N    T         L +L  L +
Sbjct: 33  LRVVQCSDLG-------LEKVPKDLPPDTALLDLQNNKI--TEIKDGDFKNLKNLHTLIL 83

Query: 211 DHNDFIGSL-PWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQ-IPM 268
            +N  I  + P   A L  L  L++  NQL E     P     +++ L +  N    +  
Sbjct: 84  INNK-ISKISPGAFAPLVKLERLYLSKNQLKE----LPEKMPKTLQELRVHENEITKVRK 138

Query: 269 SLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYH 328
           S+  F   +++ +     N +                  S  +                 
Sbjct: 139 SV--FNGLNQMIVVELGTNPL-----------------KSSGIE----------NGAFQG 169

Query: 329 QHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRS---RKNIIALD 385
              L ++ I+D N+    P  L     +L  + L  N ++   ++   S     N+  L 
Sbjct: 170 MKKLSYIRIADTNIT-TIPQGLP---PSLTELHLDGNKIT---KVDAASLKGLNNLAKLG 222

Query: 386 ISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLT---- 441
           +S+N +   +        P+L  L ++ N     +P    D   +  + L NN ++    
Sbjct: 223 LSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 280

Query: 442 -GEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKI--NLTKLKRLNLDGN 487
               P        +   + L +N +Q           +     + L   
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 77.7 bits (192), Expect = 2e-15
 Identities = 56/309 (18%), Positives = 96/309 (31%), Gaps = 69/309 (22%)

Query: 479 LKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLE 538
           L+ +          +P+ L        L + +N I+  I                     
Sbjct: 33  LRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKIT-EIK-------------------- 68

Query: 539 GPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLS 598
                +F  L  L  L L  N I+     GAF+    L  L L  N+L   +P       
Sbjct: 69  ---DGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQLK-ELPE--KMPK 121

Query: 599 QLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNF-SGQIPPCL--DNTSLHREEGYYD 655
            L+ L +  N            L ++ +++L  N   S  I          L     Y  
Sbjct: 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS----YIR 177

Query: 656 LIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIP 715
           +          +   +                           S+  L L  NK I ++ 
Sbjct: 178 I---ADTNITTIPQGL-------------------------PPSLTELHLDGNK-ITKVD 208

Query: 716 SRI-GELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAV 774
           +     L  +  L LS N+++     + +N   +  L L+ N L  K+P  L +   + V
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV 267

Query: 775 FTVAHNNLS 783
             + +NN+S
Sbjct: 268 VYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 13/128 (10%)

Query: 40  LNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAG 99
           ++ +       L  L LS N+I+  V+N     L+   +L+ L L++N     V   LA 
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSIS-AVDNGS---LANTPHLRELHLNNNKL-VKVPGGLAD 261

Query: 100 LSSLKNLSLAYNRLEGSINIE------ELDSLSNLEGLDMSDNEIDNLVVPKD-YRGLRK 152
              ++ + L  N +  +I              ++  G+ +  N +    +    +R +  
Sbjct: 262 HKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320

Query: 153 LRFLDLSG 160
              + L  
Sbjct: 321 RAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 6/94 (6%)

Query: 698 ESIHGLDLSCNKLIGEIPSRI-GELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYN 756
                LDL  NK I EI       L  +HTL L  N ++   P  F+ L ++E L LS N
Sbjct: 52  PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 757 NLTGKIPPRLVELNALAVFTVAHNNLSGKIPERI 790
            L  ++P ++     L    V  N ++ K+ + +
Sbjct: 111 QLK-ELPEKM--PKTLQELRVHENEIT-KVRKSV 140

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 703 LDLSCNKLIGEIPSRI-GELIRIHTLNLSRNNLTGTI--PVTFSNLRQVESLDLSYNNLT 759
           L +  N+ I ++   +   L ++  + L  N L  +      F  ++++  + ++  N+T
Sbjct: 126 LRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184

Query: 760 GKIPPRLVELNALAVFTVAHNNLSGKIPE 788
             IP  L    +L    +  N ++ K+  
Sbjct: 185 -TIPQGL--PPSLTELHLDGNKIT-KVDA 209

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  115 bits (291), Expect = 1e-27
 Identities = 87/444 (19%), Positives = 143/444 (32%), Gaps = 77/444 (17%)

Query: 77  SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDN 136
           +++ ++DLS NS      +S + L  L+ L +        I       LS+L  L +  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 137 EIDNLVVPKD-YRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTLYLKSNNFAKT 192
           +   L      + GL  L  L L+   +     VL     F    SL+ L L+ NN  K 
Sbjct: 90  QFLQL--ETGAFNGLANLEVLTLTQCNLD--GAVLSG-NFFKPLTSLEMLVLRDNNI-KK 143

Query: 193 VTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLT 252
           +        +     L +  N         L N                       + L+
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL---------------LRLS 188

Query: 253 SIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLS 312
           SI L  ++             F  + +       N     +           ++ S+ LS
Sbjct: 189 SITLQDMNEYWLGWEKC-GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247

Query: 313 DHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFR 372
           +                           NM   F     ++  N     L  + +     
Sbjct: 248 NSY-------------------------NMGSSFGHTNFKDPDNFTFKGLEASGVK---- 278

Query: 373 LPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPS-SFGDMNSLI 431
                       D+S +K+   +   +     +L  LT++ N  N  I   +F  +  L+
Sbjct: 279 ----------TCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLL 326

Query: 432 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKINLTKLKRLNLDGNH 488
            L+LS N L   I   +      LE L LS N   +L  Q F     L  LK L LD N 
Sbjct: 327 KLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG---LPNLKELALDTNQ 382

Query: 489 FIGGIPES-LSNCSSLQGLYISDN 511
            +  +P+      +SLQ +++  N
Sbjct: 383 -LKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  109 bits (274), Expect = 2e-25
 Identities = 83/456 (18%), Positives = 153/456 (33%), Gaps = 99/456 (21%)

Query: 40  LNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAG 99
           LN + F+  Q L+ L +        + N       GLS+L  L L +N F      +  G
Sbjct: 45  LNETSFSRLQDLQFLKVEQQTPGLVIRNNT---FRGLSSLIILKLDYNQFLQLETGAFNG 101

Query: 100 LSSLKNLSLAYNRLEGSINIEE--LDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLD 157
           L++L+ L+L    L+    +       L++LE L + DN I  +     +  +R+   LD
Sbjct: 102 LANLEVLTLTQCNLD-GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160

Query: 158 LSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIG 217
           L+  +++                   +   +          L  L+ +    ++      
Sbjct: 161 LTFNKVKS------------------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 218 SLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYS 277
                    TS+  L +  N   E+++      +   ++  L  ++     S     N+ 
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 278 KLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVII 337
                   +N  F  +E+S         + +  LS                         
Sbjct: 263 DP------DNFTFKGLEAS--------GVKTCDLSK------------------------ 284

Query: 338 SDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPV 397
              +        +  + T+L  + LA N ++                          I  
Sbjct: 285 ---SKIFALLKSVFSHFTDLEQLTLAQNEIN-------------------------KIDD 316

Query: 398 EIGKVLPNLGFLTISFNAFNGSIPS-SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLE 456
                L +L  L +S N   GSI S  F +++ L  LDLS N +   + +   +G  NL+
Sbjct: 317 NAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLK 374

Query: 457 YLLLSNN---SLQGQLFSKKINLTKLKRLNLDGNHF 489
            L L  N   S+   +F     LT L+++ L  N +
Sbjct: 375 ELALDTNQLKSVPDGIFD---RLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  100 bits (252), Expect = 1e-22
 Identities = 72/371 (19%), Positives = 131/371 (35%), Gaps = 63/371 (16%)

Query: 432 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQL----FSKKINLTKLKRLNLDGN 487
           Y+DLS N +  E+ E       +L++L +   +    +    F     L+ L  L LD N
Sbjct: 34  YVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR---GLSSLIILKLDYN 89

Query: 488 HFIGGIPES-LSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSE-F 545
                +     +  ++L+ L ++  ++ G++                       +    F
Sbjct: 90  Q-FLQLETGAFNGLANLEVLTLTQCNLDGAV-----------------------LSGNFF 125

Query: 546 CQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPN---WMGRLSQLRY 602
             L  LE+L L  NNI        F        LDL  N++  +I        +      
Sbjct: 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTL 184

Query: 603 LILANNNFEGEVPLRLCQ--------LQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYY 654
           L L++   +      L             +  LDLS N F   +            + ++
Sbjct: 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA-----------KRFF 233

Query: 655 DLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEI 714
           D I   + +  I+S +         T        ++T+KG     +   DLS +K I  +
Sbjct: 234 DAIAGTKIQSLILSNSYNMGSSFGHTN--FKDPDNFTFKGLEASGVKTCDLSKSK-IFAL 290

Query: 715 PSRI-GELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRL-VELNAL 772
              +      +  L L++N +       F  L  +  L+LS N L   I  R+   L+ L
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKL 349

Query: 773 AVFTVAHNNLS 783
            V  +++N++ 
Sbjct: 350 EVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  100 bits (250), Expect = 2e-22
 Identities = 91/441 (20%), Positives = 154/441 (34%), Gaps = 74/441 (16%)

Query: 380 NIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPS-SFGDMNSLIYLDLSNN 438
           ++  +D+S N +   +       L +L FL +        I + +F  ++SLI L L  N
Sbjct: 31  HVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 439 QLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKI--NLTKLKRLNLDGNHFIGGIPES 496
           Q   ++      G  NLE L L+  +L G + S      LT L+ L L  N+     P S
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 497 L-SNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILD 555
              N      L ++ N +  SI         L+        L          L  + + D
Sbjct: 149 FFLNMRRFHVLDLTFNKVK-SIC----EEDLLNFQGKHFTLLR---------LSSITLQD 194

Query: 556 LSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWM---GRLSQLRYLILANNNFEG 612
           +++  +      G   K + + TLDL  N    ++          ++++ LIL+N+    
Sbjct: 195 MNEYWLGWEKC-GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY--- 250

Query: 613 EVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVG 672
                          D  +  F G     +    L +            ++   +  +V 
Sbjct: 251 ---NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK------------SKIFALLKSV- 294

Query: 673 PSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRI-GELIRIHTLNLSR 731
                     F                +  L L+ N+ I +I       L  +  LNLS+
Sbjct: 295 ----------F-----------SHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQ 332

Query: 732 NNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRL-VELNALAVFTVAHNNLSGKIPERI 790
           N L       F NL ++E LDLSYN++   +  +  + L  L    +  N L   +P+ I
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK-SVPDGI 390

Query: 791 AQFATFDEDSY---EGNPFLC 808
             F             NP+ C
Sbjct: 391 --FDRLTSLQKIWLHTNPWDC 409

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 96.7 bits (241), Expect = 3e-21
 Identities = 76/450 (16%), Positives = 144/450 (32%), Gaps = 90/450 (20%)

Query: 203 AHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNN 262
           AH+  + +  N          + L  L+ L V        + ++    L+S+ +L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 263 HFQIPMSLEP--FFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGG 320
            F     LE   F   + L++    +                   L    LS        
Sbjct: 90  QFL---QLETGAFNGLANLEVLTLTQCN-----------------LDGAVLS-------- 121

Query: 321 TIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKN 380
               F      LE +++ D N++   P+    N      + L  N +     +      N
Sbjct: 122 --GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK---SICEEDLLN 176

Query: 381 IIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQL 440
                 +  +L             ++    ++          +     S+  LDLS N  
Sbjct: 177 FQGKHFTLLRLS------------SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224

Query: 441 TGEIPEHLAMGCFN--LEYLLLSNNSLQGQLFS------------KKINLTKLKRLNLDG 486
              + +          ++ L+LSN+   G  F             K +  + +K  +L  
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284

Query: 487 NHFIGGIPESL-SNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEF 545
           +  I  + +S+ S+ + L+ L ++ N+I+  I                         + F
Sbjct: 285 SK-IFALLKSVFSHFTDLEQLTLAQNEIN-KID-----------------------DNAF 319

Query: 546 CQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWM-GRLSQLRYLI 604
             L +L  L+LS+N +     +  F     L  LDL  N +   + +     L  L+ L 
Sbjct: 320 WGLTHLLKLNLSQNFLGSID-SRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELA 377

Query: 605 LANNNFEGEVPLRLCQLQKLRLLDLSHNNF 634
           L  N  +        +L  L+ + L  N +
Sbjct: 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 93.3 bits (232), Expect = 4e-20
 Identities = 71/430 (16%), Positives = 139/430 (32%), Gaps = 104/430 (24%)

Query: 45  FTPFQQLESLDLSGNNIAGCVENEGLEK--LSGLSNLKFLDLSHNSFNNSVLS--SLAGL 100
           F     L  L L  N          LE    +GL+NL+ L L+  + + +VLS      L
Sbjct: 75  FRGLSSLIILKLDYNQF------LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL 128

Query: 101 SSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSG 160
           +SL+ L L  N ++         ++     LD++ N++ ++   ++         L+  G
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI--CEE-------DLLNFQG 179

Query: 161 LRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP 220
                                L L S                       ++         
Sbjct: 180 KH----------------FTLLRLSSI------------------TLQDMNEYWLGWEKC 205

Query: 221 WCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLK 280
                 TS+  L +  N   E+++      +   ++  L  ++     S     N+    
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP- 264

Query: 281 IFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDV 340
                +N  F  +E+S         + +  LS                            
Sbjct: 265 -----DNFTFKGLEAS--------GVKTCDLSK--------------------------- 284

Query: 341 NMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPT---RSRKNIIALDISYNKLQGHIPV 397
           +        +  + T+L  + LA N ++   ++         +++ L++S N L   I  
Sbjct: 285 SKIFALLKSVFSHFTDLEQLTLAQNEIN---KIDDNAFWGLTHLLKLNLSQNFLG-SIDS 340

Query: 398 EIGKVLPNLGFLTISFNAFNGSIPS-SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLE 456
            + + L  L  L +S+N    ++   SF  + +L  L L  NQL   +P+ +     +L+
Sbjct: 341 RMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQ 398

Query: 457 YLLLSNNSLQ 466
            + L  N   
Sbjct: 399 KIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 55/283 (19%), Positives = 94/283 (33%), Gaps = 32/283 (11%)

Query: 30  LSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSF 89
           L+        L+ + F P   LE L L  NNI   ++         +     LDL+ N  
Sbjct: 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASF--FLNMRRFHVLDLTFNKV 166

Query: 90  NNSVLSSLAGLSS--LKNLSLAYNRLE-------GSINIEELDSLSNLEGLDMSDNEIDN 140
            +     L          L L+   L+       G          +++  LD+S N    
Sbjct: 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226

Query: 141 LVVPKDYRGLR--KLRFLDLSGLRIRDGSKVLHSIGSFP----------SLKTLYLKSNN 188
            +  + +  +   K++ L LS       S    +                +KT  L  + 
Sbjct: 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286

Query: 189 FAKTVTTTQGLCELAHLQELYIDHNDFIGSLP-WCLANLTSLRVLHVPDNQLTENLSSSP 247
               + +         L++L +  N+ I  +       LT L  L++  N L   + S  
Sbjct: 287 IFALLKSV--FSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGS-IDSRM 342

Query: 248 LMHLTSIELLILSNNHFQ-IPMSLEPFFNYSKLKIFHGRENQI 289
             +L  +E+L LS NH + +      F     LK      NQ+
Sbjct: 343 FENLDKLEVLDLSYNHIRALGDQS--FLGLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 69.4 bits (170), Expect = 2e-12
 Identities = 47/250 (18%), Positives = 88/250 (35%), Gaps = 46/250 (18%)

Query: 29  LLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFL------ 82
           L  +N     +           + +LDLSGN        +        + ++ L      
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK-ESMAKRFFDAIAGTKIQSLILSNSY 250

Query: 83  ----DLSHNSFNNSVLSSLAGL--SSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDN 136
                  H +F +    +  GL  S +K   L+ +++  ++        ++LE L ++ N
Sbjct: 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQN 309

Query: 137 EIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTT 196
           EI+ +     + GL  L  L+LS   +                    + S  F       
Sbjct: 310 EINKID-DNAFWGLTHLLKLNLSQNFLGS------------------IDSRMFEN----- 345

Query: 197 QGLCELAHLQELYIDHNDFIGSLPWCL-ANLTSLRVLHVPDNQLTENLSSSPLMHLTSIE 255
                L  L+ L + +N  I +L       L +L+ L +  NQL  ++       LTS++
Sbjct: 346 -----LDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQ 398

Query: 256 LLILSNNHFQ 265
            + L  N + 
Sbjct: 399 KIWLHTNPWD 408

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  116 bits (291), Expect = 4e-27
 Identities = 62/303 (20%), Positives = 117/303 (38%), Gaps = 29/303 (9%)

Query: 339 DVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPT---RSRKNIIALDISYNKLQGHI 395
           D+  +  +  +      N + +   N+++    +LP     S + +  L+++  +++  I
Sbjct: 35  DMQTQDVYFGFEDITLNNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIE-EI 90

Query: 396 PVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNL 455
                     +  L + FNA     P  F ++  L  L L  N L+  +P  +      L
Sbjct: 91  DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL 149

Query: 456 EYLLLSNN---SLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDND 512
             L +SNN    ++   F      T L+ L L  N  +  +   LS   SL    +S N 
Sbjct: 150 TTLSMSNNNLERIEDDTFQ---ATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNL 203

Query: 513 ISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSK 572
           +S ++         ++ +    N +   +         L IL L  NN+           
Sbjct: 204 LS-TLA----IPIAVEELDASHNSINV-VRGPVNV--ELTILKLQHNNLTDTA---WLLN 252

Query: 573 CSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHN 632
              L+ +DL  N L   + +   ++ +L  L ++NN     + L    +  L++LDLSHN
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 311

Query: 633 NFS 635
           +  
Sbjct: 312 HLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  111 bits (280), Expect = 1e-25
 Identities = 72/380 (18%), Positives = 138/380 (36%), Gaps = 58/380 (15%)

Query: 409 LTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SL 465
           + I     +         +N+   +   N+ +  ++P  L      +E L L++     +
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEI 90

Query: 466 QGQLFSKKINLTKLKRLNLDGNHFIGGIPES-LSNCSSLQGLYISDNDISGSIPTWM-GN 523
               F+       +++L +  N  I  +P     N   L  L +  ND+S S+P  +  N
Sbjct: 91  DTYAFA---YAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHN 145

Query: 524 ISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCN 583
              L  + M +N+LE      F     L+ L LS N +    L         L   ++  
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL-SLIPS---LFHANVSY 201

Query: 584 NRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLD 643
           N L+  +         +  L  ++N+      +R     +L +L L HNN +      L+
Sbjct: 202 NLLS-TLAI----PIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLT-DTAWLLN 252

Query: 644 NTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGL 703
              L       DL           SYN      E E I +    +        ++ +  L
Sbjct: 253 YPGLV----EVDL-----------SYN------ELEKIMYHPFVK--------MQRLERL 283

Query: 704 DLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIP 763
            +S N+ +  +      +  +  L+LS N+L   +        ++E+L L +N++   + 
Sbjct: 284 YISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK 340

Query: 764 PRLVELNALAVFTVAHNNLS 783
                 + L   T++HN+  
Sbjct: 341 LST--HHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  111 bits (279), Expect = 2e-25
 Identities = 80/617 (12%), Positives = 182/617 (29%), Gaps = 65/617 (10%)

Query: 30  LSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSF 89
           + +++ +               + +    + +           L     ++ L+L+    
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL----LDSFRQVELLNLNDLQI 87

Query: 90  NNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRG 149
                 + A   +++ L + +N +   +      ++  L  L +  N++ +L     +  
Sbjct: 88  EEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHN 145

Query: 150 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELY 209
             KL  L +S   +        +  +  SL+ L L SN       T   L  +  L    
Sbjct: 146 TPKLTTLSMSNNNLERIED--DTFQATTSLQNLQLSSNRL-----THVDLSLIPSLFHAN 198

Query: 210 IDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMS 269
           + +N  + +L        ++  L    N +   +     + LT    L L +N+      
Sbjct: 199 VSYN-LLSTLA----IPIAVEELDASHNSINV-VRGPVNVELTI---LKLQHNNLT---D 246

Query: 270 LEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQ 329
                NY  L       N++  +I           +L  + +S++       +  +    
Sbjct: 247 TAWLLNYPGLVEVDLSYNEL-EKIMY--HPFVKMQRLERLYISNNRLVA---LNLYGQPI 300

Query: 330 HHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYN 389
             L+ + +S  N               L ++ L +NS+     L   +   +  L +S+N
Sbjct: 301 PTLKVLDLSH-NHLLHVERNQP-QFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHN 355

Query: 390 KLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGD-------MNSLIYLDLSNNQLTG 442
                    +  +  N+    +     +  I                 +   L    LT 
Sbjct: 356 DWD---CNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTS 412

Query: 443 --EIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGI----PES 496
             E  +     C   + +    +          + L   ++L  + N     +     E 
Sbjct: 413 VVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQ 472

Query: 497 LSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDL 556
           +     LQGL+   +               L    +P + L     +      +L+    
Sbjct: 473 IQQEQLLQGLHAEIDTN-------------LRRYRLPKDGLARSSDNLNKVFTHLKERQA 519

Query: 557 SKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPL 616
            K          A +K      L+  N  L   + N   + ++LR           ++  
Sbjct: 520 FKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579

Query: 617 RLCQLQKLRLLDLSHNN 633
           +  +    R +   H++
Sbjct: 580 KKNRNPDTRRVSHHHHH 596

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  109 bits (274), Expect = 6e-25
 Identities = 70/452 (15%), Positives = 160/452 (35%), Gaps = 91/452 (20%)

Query: 205 LQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHF 264
             +++ID         +    L + +++   ++ + + L ++ L     +ELL L++   
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQI 87

Query: 265 QIPMSLEP--FFNYSKLKIFHGRENQIFGEIESSH-SSLTPKFQLTSISLSDHGDSDGGT 321
           +    ++   F     ++  +   N I   +      ++     LT + L          
Sbjct: 88  E---EIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVP---LLTVLVLER-------- 132

Query: 322 IPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPT---RSR 378
                              N     P  +  N   L ++ ++NN+L    R+     ++ 
Sbjct: 133 -------------------NDLSSLPRGIFHNTPKLTTLSMSNNNLE---RIEDDTFQAT 170

Query: 379 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNN 438
            ++  L +S N+L  H+ +    ++P+L    +S+N       S+     ++  LD S+N
Sbjct: 171 TSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHN 221

Query: 439 QLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLS 498
            +   +   +      L  L L +N+L     +  +N   L  ++L  N     +     
Sbjct: 222 SIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275

Query: 499 NCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSK 558
               L+ LYIS+N +                           +      +  L++LDLS 
Sbjct: 276 KMQRLERLYISNNRLVA-------------------------LNLYGQPIPTLKVLDLSH 310

Query: 559 NNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRL 618
           N++    +     +   L  L L +N +   +   +     L+ L L++N+++      L
Sbjct: 311 NHL--LHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRAL 365

Query: 619 CQLQKLRLLDLSHNNFSGQIPPCLDNTSLHRE 650
              + +    +   +   +I   L++    +E
Sbjct: 366 --FRNVARPAVDDADQHCKIDYQLEHGLCCKE 395

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  105 bits (262), Expect = 2e-23
 Identities = 88/564 (15%), Positives = 166/564 (29%), Gaps = 101/564 (17%)

Query: 73  LSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLD 132
           L        + +   + +         L++ K ++   + +   +    LDS   +E L+
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 81

Query: 133 MSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKT 192
           ++D +I+ +     +     ++ L +    IR      H   + P L  L L+ N+   +
Sbjct: 82  LNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPP--HVFQNVPLLTVLVLERNDL--S 136

Query: 193 VTTTQGLCELAHLQELYIDHNDFIGSLPW-CLANLTSLRVLHVPDNQLTENLSSSPLMHL 251
                       L  L + +N+ +  +        TSL+ L +  N+LT       L  +
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT----HVDLSLI 191

Query: 252 TSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKF--QLTSI 309
            S+    +S N       L        ++      N I        + +      +LT +
Sbjct: 192 PSLFHANVSYNL------LSTLAIPIAVEELDASHNSI--------NVVRGPVNVELTIL 237

Query: 310 SLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSG 369
            L                             N   +     L N   L  + L+ N L  
Sbjct: 238 KLQH---------------------------NNLTDTAW--LLNYPGLVEVDLSYNELE- 267

Query: 370 PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNS 429
                                    I       +  L  L IS N    ++      + +
Sbjct: 268 ------------------------KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT 302

Query: 430 LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHF 489
           L  LDLS+N L   +  +       LE L L +NS+     S       LK L L  N +
Sbjct: 303 LKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTLKLS---THHTLKNLTLSHNDW 357

Query: 490 IGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLD 549
                 +L    ++    + D D    I   + +              E   P     L 
Sbjct: 358 DCNSLRALF--RNVARPAVDDADQHCKIDYQLEH---------GLCCKESDKPYLDRLLQ 406

Query: 550 YLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNN 609
           Y+ +  + +     +    A    + + +L     +  G       +L      + A   
Sbjct: 407 YIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQ 466

Query: 610 FEGEVPLRLCQLQKLRLLDLSHNN 633
                  ++ Q Q L+ L    + 
Sbjct: 467 --QLTNEQIQQEQLLQGLHAEIDT 488

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 98.5 bits (245), Expect = 2e-21
 Identities = 68/391 (17%), Positives = 125/391 (31%), Gaps = 80/391 (20%)

Query: 411 ISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF----NLEYLLLSNN--- 463
             +N           D N        +  +  +  +           N + +   N+   
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64

Query: 464 SLQGQLFSKKINLTKLKRLNLDGNHFIGGIP-ESLSNCSSLQGLYISDNDISGSIPTWMG 522
            L   L     +  +++ LNL+    I  I   + +   ++Q LY+  N I   +P    
Sbjct: 65  KLPAALLD---SFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIR-YLP---- 115

Query: 523 NISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLC 582
                              P  F  +  L +L L +N+++  P  G F     L TL + 
Sbjct: 116 -------------------PHVFQNVPLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMS 155

Query: 583 NNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCL 642
           NN L     +     + L+ L L++N     V L L  +  L   ++S+N  S  +   +
Sbjct: 156 NNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLS-TLAIPI 211

Query: 643 DNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHG 702
               L                    S+N          +                  +  
Sbjct: 212 AVEELD------------------ASHN------SINVVRGPV-----------NVELTI 236

Query: 703 LDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKI 762
           L L  N L  +    +     +  ++LS N L   +   F  ++++E L +S N L   +
Sbjct: 237 LKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-AL 293

Query: 763 PPRLVELNALAVFTVAHNNLSGKIPERIAQF 793
                 +  L V  ++HN+L   +     QF
Sbjct: 294 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 323

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  109 bits (275), Expect = 2e-26
 Identities = 56/254 (22%), Positives = 101/254 (39%), Gaps = 30/254 (11%)

Query: 48  FQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLS 107
                 +    +N+            + L  +  L           +  +  L++L  L 
Sbjct: 18  LANAIKIAAGKSNV------TDTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 108 LAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGS 167
           L  N++    ++  L +L+ +  L++S N + N+       GL+ ++ LDL+  +I D  
Sbjct: 70  LKDNQIT---DLAPLKNLTKITELELSGNPLKNV---SAIAGLQSIKTLDLTSTQITD-- 121

Query: 168 KVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLT 227
             +  +    +L+ LYL  N     +T    L  L +LQ L I +   +  L   LANL+
Sbjct: 122 --VTPLAGLSNLQVLYLDLNQ----ITNISPLAGLTNLQYLSIGNAQ-VSDLT-PLANLS 173

Query: 228 SLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGREN 287
            L  L   DN+++     SPL  L ++  + L NN       + P  N S L I      
Sbjct: 174 KLTTLKADDNKIS---DISPLASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQ 227

Query: 288 QIFGEIESSHSSLT 301
            I  +    +++L 
Sbjct: 228 TITNQPVFYNNNLV 241

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  109 bits (274), Expect = 3e-26
 Identities = 52/254 (20%), Positives = 111/254 (43%), Gaps = 31/254 (12%)

Query: 28  DLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHN 87
           + + +    +   +         + +L   G  +        +E +  L+NL  L+L  N
Sbjct: 20  NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGV------TTIEGVQYLNNLIGLELKDN 73

Query: 88  SFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDY 147
              +  L+ L  L+ +  L L+ N L+   N+  +  L +++ LD++  +I ++      
Sbjct: 74  QITD--LAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITDV---TPL 125

Query: 148 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQE 207
            GL  L+ L L   +I +    +  +    +L+ L + +      V+    L  L+ L  
Sbjct: 126 AGLSNLQVLYLDLNQITN----ISPLAGLTNLQYLSIGNAQ----VSDLTPLANLSKLTT 177

Query: 208 LYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIP 267
           L  D N  I  +   LA+L +L  +H+ +NQ++     SPL + +++ ++ L+N      
Sbjct: 178 LKADDN-KISDIS-PLASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQ----T 228

Query: 268 MSLEPFFNYSKLKI 281
           ++ +P F  + L +
Sbjct: 229 ITNQPVFYNNNLVV 242

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  107 bits (269), Expect = 1e-25
 Identities = 63/244 (25%), Positives = 111/244 (45%), Gaps = 29/244 (11%)

Query: 70  LEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLE 129
           +     L+N   +    ++  +    + A L  +  LS     +     IE +  L+NL 
Sbjct: 12  IFPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLI 66

Query: 130 GLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 189
           GL++ DN+I +L      + L K+  L+LSG  +++    + +I    S+KTL L S   
Sbjct: 67  GLELKDNQITDL---APLKNLTKITELELSGNPLKN----VSAIAGLQSIKTLDLTSTQ- 118

Query: 190 AKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLM 249
              +T    L  L++LQ LY+D N  I ++   LA LT+L+ L + + Q++     +PL 
Sbjct: 119 ---ITDVTPLAGLSNLQVLYLDLNQ-ITNIS-PLAGLTNLQYLSIGNAQVS---DLTPLA 170

Query: 250 HLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSI 309
           +L+ +  L   +N       + P  +   L   H + NQI     S  S L     L  +
Sbjct: 171 NLSKLTTLKADDNKIS---DISPLASLPNLIEVHLKNNQI-----SDVSPLANTSNLFIV 222

Query: 310 SLSD 313
           +L++
Sbjct: 223 TLTN 226

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 78.6 bits (194), Expect = 7e-16
 Identities = 52/263 (19%), Positives = 98/263 (37%), Gaps = 26/263 (9%)

Query: 379 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNN 438
            N I +    + +   +       L  +  L+        +I      +N+LI L+L +N
Sbjct: 19  ANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDN 73

Query: 439 QLTGEIP-EHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESL 497
           Q+T   P ++L      +  L LS N L+    S    L  +K L+L     I  +   L
Sbjct: 74  QITDLAPLKNLT----KITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQ-ITDV-TPL 125

Query: 498 SNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLS 557
           +  S+LQ LY+  N I+   P  +  ++ L  + + +  +     +    L  L  L   
Sbjct: 126 AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKAD 181

Query: 558 KNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLR 617
            N I+        +    L+ + L NN+++ ++   +   S L  + L N     +    
Sbjct: 182 DNKISDIS---PLASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTNQTITNQPVFY 236

Query: 618 LCQLQKLRLLDLSHNNFSGQIPP 640
                 L + ++        I P
Sbjct: 237 ---NNNLVVPNVVKGPSGAPIAP 256

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.8 bits (179), Expect = 6e-14
 Identities = 49/260 (18%), Positives = 90/260 (34%), Gaps = 23/260 (8%)

Query: 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLT 410
                N   I    ++++    +       I  L      +     +E  + L NL  L 
Sbjct: 15  DPALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTT---IEGVQYLNNLIGLE 69

Query: 411 ISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTG-EIPEHLAMGCFNLEYLLLSNNSLQGQL 469
           +  N    +  +   ++  +  L+LS N L        L     +++ L L++  +    
Sbjct: 70  LKDNQI--TDLAPLKNLTKITELELSGNPLKNVSAIAGLQ----SIKTLDLTSTQITD-- 121

Query: 470 FSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDA 529
            +    L+ L+ L LD N  I  I   L+  ++LQ L I +  +S   P  + N+S L  
Sbjct: 122 VTPLAGLSNLQVLYLDLNQ-ITNI-SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTT 177

Query: 530 IIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGN 589
           +   DN +     S    L  L  + L  N I+        +  S L  + L N  +   
Sbjct: 178 LKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTITNQ 232

Query: 590 IPNWMGRLSQLRYLILANNN 609
              +   L     +   +  
Sbjct: 233 PVFYNNNLVVPNVVKGPSGA 252

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.3 bits (170), Expect = 8e-13
 Identities = 47/245 (19%), Positives = 88/245 (35%), Gaps = 43/245 (17%)

Query: 403 LPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSN 462
           L N   +    +        +  D++ +  L      +T  I E +     NL  L L +
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TI-EGVQ-YLNNLIGLELKD 72

Query: 463 NSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMG 522
           N +     +   NLTK+  L L GN  +  +  +++   S++ L ++   I+   P    
Sbjct: 73  NQITD--LAPLKNLTKITELELSGNP-LKNV-SAIAGLQSIKTLDLTSTQITDVTP---- 124

Query: 523 NISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLC 582
                                    L  L++L L  N I         +  + L  L + 
Sbjct: 125 ----------------------LAGLSNLQVLYLDLNQITNIS---PLAGLTNLQYLSIG 159

Query: 583 NNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCL 642
           N +++ ++   +  LS+L  L   +N      PL    L  L  + L +N  S  + P  
Sbjct: 160 NAQVS-DLTP-LANLSKLTTLKADDNKISDISPL--ASLPNLIEVHLKNNQIS-DVSPLA 214

Query: 643 DNTSL 647
           + ++L
Sbjct: 215 NTSNL 219

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 49/315 (15%), Positives = 100/315 (31%), Gaps = 78/315 (24%)

Query: 222 CLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKI 281
               L +   +    + +T    +     L  I  L           ++E     + L  
Sbjct: 14  PDPALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIG 67

Query: 282 FHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVN 341
              ++N                 Q+T ++                               
Sbjct: 68  LELKDN-----------------QITDLAP------------------------------ 80

Query: 342 MRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGK 401
                    L+N T +  + L+ N L     +     ++I  LD++  ++    P+    
Sbjct: 81  ---------LKNLTKITELELSGNPLKNVSAI--AGLQSIKTLDLTSTQITDVTPLAG-- 127

Query: 402 VLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIP-EHLAMGCFNLEYLLL 460
            L NL  L +  N    +  S    + +L YL + N Q++   P  +L+     L  L  
Sbjct: 128 -LSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTPLANLS----KLTTLKA 180

Query: 461 SNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTW 520
            +N +     S   +L  L  ++L  N  I  +   L+N S+L  + +++  I+     +
Sbjct: 181 DDNKISD--ISPLASLPNLIEVHLKNNQ-ISDV-SPLANTSNLFIVTLTNQTITNQPVFY 236

Query: 521 MGNISFLDAIIMPDN 535
             N+   + +  P  
Sbjct: 237 NNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 60/337 (17%), Positives = 103/337 (30%), Gaps = 84/337 (24%)

Query: 149 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQEL 208
            L     +      + D      +      + TL          VTT +G+  L +L  L
Sbjct: 17  ALANAIKIAAGKSNVTD----TVTQADLDGITTLSAFGTG----VTTIEGVQYLNNLIGL 68

Query: 209 YIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPM 268
            +  N  I  L   L NLT +  L +  N L    + S +  L SI+ L L++       
Sbjct: 69  ELKDNQ-ITDLA-PLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQIT--- 120

Query: 269 SLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYH 328
            + P    S L++ +   N                 Q+T+IS                  
Sbjct: 121 DVTPLAGLSNLQVLYLDLN-----------------QITNISP----------------- 146

Query: 329 QHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISY 388
                                 L   TNL+ + + N  +S     P  +   +  L    
Sbjct: 147 ----------------------LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADD 182

Query: 389 NKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHL 448
           NK+    P+     LPNL  + +  N    S  S   + ++L  + L+N  +T +   + 
Sbjct: 183 NKISDISPLA---SLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQTITNQPVFYN 237

Query: 449 AMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLD 485
                NL    +      G   +           + +
Sbjct: 238 ----NNLVVPNVVKG-PSGAPIAPATISDNGTYASPN 269

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 28/159 (17%), Positives = 59/159 (37%), Gaps = 13/159 (8%)

Query: 475 NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPD 534
            L    ++    ++       + ++   +  L      ++ +I   +  ++ L  + + D
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72

Query: 535 NHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWM 594
           N +     +    L  +  L+LS N +       A +    + TLDL + ++    P  +
Sbjct: 73  NQITDL--APLKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDLTSTQITDVTP--L 125

Query: 595 GRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNN 633
             LS L+ L L  N      P  L  L  L+ L + +  
Sbjct: 126 AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQ 162

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 40/237 (16%), Positives = 77/237 (32%), Gaps = 45/237 (18%)

Query: 547 QLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILA 606
            L     +   K+N+         +    + TL      +   I   +  L+ L  L L 
Sbjct: 17  ALANAIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELK 71

Query: 607 NNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDI 666
           +N      PL+   L K+  L+LS N     +       S+               +   
Sbjct: 72  DNQITDLAPLK--NLTKITELELSGNPLK-NVSAIAGLQSI---------------KTLD 113

Query: 667 VSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHT 726
           ++        +   +               L ++  L L  N+ I  I   +  L  +  
Sbjct: 114 LTST------QITDVTPLAG----------LSNLQVLYLDLNQ-ITNISP-LAGLTNLQY 155

Query: 727 LNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
           L++    ++   P   +NL ++ +L    N ++  I P L  L  L    + +N +S
Sbjct: 156 LSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQIS 208

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  109 bits (274), Expect = 3e-26
 Identities = 56/224 (25%), Positives = 92/224 (41%), Gaps = 20/224 (8%)

Query: 48  FQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLA--GLSSLKN 105
                 L+L  N +              L+ L  L LS N  +     S +  G +SLK 
Sbjct: 27  PSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 106 LSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRD 165
           L L++N +  +++      L  LE LD   + +  +     +  LR L +LD+S    R 
Sbjct: 83  LDLSFNGVI-TMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR- 139

Query: 166 GSKVLHSIGSF---PSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPW- 221
              V  + G F    SL+ L +  N+F +         EL +L  L +     +  L   
Sbjct: 140 ---VAFN-GIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQ-LEQLSPT 193

Query: 222 CLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQ 265
              +L+SL+VL++  N    +L + P   L S+++L  S NH  
Sbjct: 194 AFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  105 bits (264), Expect = 6e-25
 Identities = 55/258 (21%), Positives = 99/258 (38%), Gaps = 14/258 (5%)

Query: 384 LDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLT-G 442
           +  +   L   +P  I     +   L +  N         F  +  L  L LS+N L+  
Sbjct: 12  IRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 443 EIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPES--LSNC 500
                   G  +L+YL LS N +   + S  + L +L+ L+   ++ +  + E     + 
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSL 125

Query: 501 SSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSE-FCQLDYLEILDLSKN 559
            +L  L IS      +       +S L+ + M  N  +     + F +L  L  LDLS+ 
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 560 NIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLC 619
            +       AF+  S L  L++ +N            L+ L+ L  + N+       +  
Sbjct: 186 QLEQLS-PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQEL 243

Query: 620 Q--LQKLRLLDLSHNNFS 635
           Q     L  L+L+ N+F+
Sbjct: 244 QHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  101 bits (253), Expect = 1e-23
 Identities = 56/222 (25%), Positives = 88/222 (39%), Gaps = 9/222 (4%)

Query: 45  FTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLK 104
           F    QL  L LS N ++   +    +   G ++LK+LDLS N    ++ S+  GL  L+
Sbjct: 48  FDKLTQLTKLSLSSNGLS--FKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLE 104

Query: 105 NLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIR 164
           +L   ++ L+         SL NL  LD+S            + GL  L  L ++G   +
Sbjct: 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQ 163

Query: 165 DGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLA 224
           +            +L  L L          +      L+ LQ L + HN+F     +   
Sbjct: 164 ENFLP-DIFTELRNLTFLDLSQCQL--EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 225 NLTSLRVLHVPDNQLTENLSSSPLMHL-TSIELLILSNNHFQ 265
            L SL+VL    N +        L H  +S+  L L+ N F 
Sbjct: 221 CLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 98.2 bits (245), Expect = 2e-22
 Identities = 54/242 (22%), Positives = 95/242 (39%), Gaps = 17/242 (7%)

Query: 355 TNLRSIILANNSLSGPFRLPT---RSRKNIIALDISYNKLQ-GHIPVEIGKVLPNLGFLT 410
           ++   + L +N L     LP         +  L +S N L       +      +L +L 
Sbjct: 28  SSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 411 ISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLA-MGCFNLEYLLLSNN---SLQ 466
           +SFN    ++ S+F  +  L +LD  ++ L  ++ E    +   NL YL +S+       
Sbjct: 85  LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 467 GQLFSKKINLTKLKRLNLDGNHFIGGIPE-SLSNCSSLQGLYISDNDISGSIPTWMGNIS 525
             +F+    L+ L+ L + GN F         +   +L  L +S   +    PT   ++S
Sbjct: 143 NGIFN---GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199

Query: 526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNR 585
            L  + M  N+        +  L+ L++LD S N+I            S L  L+L  N 
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259

Query: 586 LN 587
             
Sbjct: 260 FA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.5 bits (233), Expect = 6e-21
 Identities = 50/214 (23%), Positives = 79/214 (36%), Gaps = 39/214 (18%)

Query: 433 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKINLTKLKRLNLDGNH- 488
           +  ++  LT  +P  +     +   L L +N   SL   +F     LT+L +L+L  N  
Sbjct: 12  IRCNSKGLT-SVPTGIPS---SATRLELESNKLQSLPHGVFD---KLTQLTKLSLSSNGL 64

Query: 489 -FIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQ 547
            F G   +S    +SL+ L +S N +                           + S F  
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVIT-------------------------MSSNFLG 99

Query: 548 LDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILAN 607
           L+ LE LD   +N+        F     L+ LD+ +             LS L  L +A 
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159

Query: 608 NNFEGEVPLR-LCQLQKLRLLDLSHNNFSGQIPP 640
           N+F+         +L+ L  LDLS      Q+ P
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.9 bits (221), Expect = 2e-19
 Identities = 45/216 (20%), Positives = 75/216 (34%), Gaps = 35/216 (16%)

Query: 77  SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLE-GSINIEELDSLSNLEGLDMSD 135
           S+   L+L  N   +        L+ L  LSL+ N L       +     ++L+ LD+S 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 136 NEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTT 195
           N +  +    ++ GL +L  LD     +    K +     F SL+               
Sbjct: 88  NGVITM--SSNFLGLEQLEHLDFQHSNL----KQMSEFSVFLSLR--------------- 126

Query: 196 TQGLCELAHLQELYIDHNDFIGSLPW-CLANLTSLRVLHVPDNQLTENLSSSPLMHLTSI 254
                   +L  L I H              L+SL VL +  N   EN        L ++
Sbjct: 127 --------NLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177

Query: 255 ELLILSNNHFQ-IPMSLEPFFNYSKLKIFHGRENQI 289
             L LS    + +  +   F + S L++ +   N  
Sbjct: 178 TFLDLSQCQLEQLSPTA--FNSLSSLQVLNMSHNNF 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 39/177 (22%), Positives = 67/177 (37%), Gaps = 12/177 (6%)

Query: 347 PSWLLENNTNLRSIILANNSLSGPFRLPTRSRK--NIIALDISYNKLQGHIPVEIGKVLP 404
            S      T+L+ + L+ N +     + +       +  LD  ++ L+      +   L 
Sbjct: 70  CSQSDFGTTSLKYLDLSFNGVI---TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126

Query: 405 NLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN- 463
           NL +L IS      +    F  ++SL  L ++ N         +     NL +L LS   
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 464 --SLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIP 518
              L    F+   +L+ L+ LN+  N+F           +SLQ L  S N I  +  
Sbjct: 187 LEQLSPTAFN---SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSK 239

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.5 bits (194), Expect = 7e-16
 Identities = 53/311 (17%), Positives = 104/311 (33%), Gaps = 66/311 (21%)

Query: 480 KRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEG 539
             +  +       +P  +   SS   L +  N +  S+P                     
Sbjct: 10  TEIRCNSKGLTS-VPTGIP--SSATRLELESNKLQ-SLP--------------------- 44

Query: 540 PIPSEFCQLDYLEILDLSKNNIAGRPL-NGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLS 598
                F +L  L  L LS N ++ +   + +    + L  LDL  N +   + +    L 
Sbjct: 45  --HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE 101

Query: 599 QLRYLILANNNFEGEVPLRLCQ-LQKLRLLDLSHNNFSGQIPP-CLDN-TSLHREEGYYD 655
           QL +L   ++N +      +   L+ L  LD+SH +          +  +SL        
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSL-------- 152

Query: 656 LIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIP 715
                  E   ++ N        +                 L ++  LDLS  + + ++ 
Sbjct: 153 -------EVLKMAGNSFQENFLPDIF-------------TELRNLTFLDLSQCQ-LEQLS 191

Query: 716 SRI-GELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVE--LNAL 772
                 L  +  LN+S NN        +  L  ++ LD S N++      + ++   ++L
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSL 250

Query: 773 AVFTVAHNNLS 783
           A   +  N+ +
Sbjct: 251 AFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.5 bits (194), Expect = 7e-16
 Identities = 49/295 (16%), Positives = 81/295 (27%), Gaps = 60/295 (20%)

Query: 174 GSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHND--FIGSLPWCLANLTSLRV 231
           G   S   L L+SN             +L  L +L +  N   F G         TSL+ 
Sbjct: 25  GIPSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 232 LHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFG 291
           L +  N +     SS  + L  +E L   +++ +       F +   L            
Sbjct: 83  LDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-- 138

Query: 292 EIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLL 351
                                                   LE + ++  + +  F   + 
Sbjct: 139 ---------------RVAF------------NGIFNGLSSLEVLKMAGNSFQENFLPDIF 171

Query: 352 ENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTI 411
               NL  + L+   L                           +       L +L  L +
Sbjct: 172 TELRNLTFLDLSQCQLE-------------------------QLSPTAFNSLSSLQVLNM 206

Query: 412 SFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ 466
           S N F       +  +NSL  LD S N +     + L     +L +L L+ N   
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 57/273 (20%), Positives = 96/273 (35%), Gaps = 47/273 (17%)

Query: 551 LEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLN--GNIPNWMGRLSQLRYLILANN 608
              L+L  N +   P +G F K + L  L L +N L+  G         + L+YL L+ N
Sbjct: 30  ATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 609 NFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPC---LDNTSLHREEGYYDLIPTYRNEYD 665
                +      L++L  LD  H+N   Q+      L   +L     Y D+         
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLI----YLDI---SHTHTR 139

Query: 666 IVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRI-GELIRI 724
           +    +           F             L S+  L ++ N         I  EL  +
Sbjct: 140 VAFNGI-----------F-----------NGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177

Query: 725 HTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPR-LVELNALAVFTVAHNNLS 783
             L+LS+  L    P  F++L  ++ L++S+NN    +       LN+L V   + N++ 
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM 236

Query: 784 GKIPERIAQFATFDED----SYEGNPFLCGPPL 812
               ++      F       +   N F C    
Sbjct: 237 -TSKKQE--LQHFPSSLAFLNLTQNDFACTCEH 266

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 38/220 (17%), Positives = 68/220 (30%), Gaps = 41/220 (18%)

Query: 571 SKCS-YLLTLDLCNNRLN---GNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRL 626
           S+CS     +   +  L      IP+          L L +N  +        +L +L  
Sbjct: 3   SRCSCSGTEIRCNSKGLTSVPTGIPSS------ATRLELESNKLQSLPHGVFDKLTQLTK 56

Query: 627 LDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTK 686
           L LS N  S +      +      + Y DL           S+N                
Sbjct: 57  LSLSSNGLSFKGCCSQSDFGTTSLK-YLDL-----------SFN---------------G 89

Query: 687 ERSYTYKGQPLESIHGLDLSCNKLIGEIPSR--IGELIRIHTLNLSRNNLTGTIPVTFSN 744
             + +     LE +  LD   +  + ++        L  +  L++S  +        F+ 
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 745 LRQVESLDLSYNNLTGKIPPR-LVELNALAVFTVAHNNLS 783
           L  +E L ++ N+      P    EL  L    ++   L 
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  113 bits (284), Expect = 4e-26
 Identities = 65/325 (20%), Positives = 112/325 (34%), Gaps = 52/325 (16%)

Query: 355 TNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGK------------- 401
            ++ ++++ +N+L+    LP      +  L++S N+L   +PV                 
Sbjct: 61  AHITTLVIPDNNLT---SLPA-LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH 115

Query: 402 ---VLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL 458
              +   L  L I  N    S+P        L  L +S+NQL   +P   +     L  L
Sbjct: 116 LPALPSGLCKLWIFGNQLT-SLPVLPP---GLQELSVSDNQLA-SLPALPS----ELCKL 166

Query: 459 LLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIP 518
              NN L   L       + L+ L++  N  +  +P   S    L  L+  +N ++ S+P
Sbjct: 167 WAYNNQLT-SLPM---LPSGLQELSVSDNQ-LASLPTLPSE---LYKLWAYNNRLT-SLP 217

Query: 519 TWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLT 578
                +  L    +  N L   +P    +L   + L +S N +   P        S LL+
Sbjct: 218 ALPSGLKELI---VSGNRLTS-LPVLPSEL---KELMVSGNRLTSLP-----MLPSGLLS 265

Query: 579 LDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQI 638
           L +  N+L   +P  +  LS    + L  N         L ++            F    
Sbjct: 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAG 324

Query: 639 PPCLDNTSLHREEGYYDLIPTYRNE 663
                 T          L+P    E
Sbjct: 325 ASAPRETRALHLAAADWLVPAREGE 349

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  109 bits (273), Expect = 1e-24
 Identities = 67/350 (19%), Positives = 120/350 (34%), Gaps = 84/350 (24%)

Query: 428 NSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGN 487
           N    L++  + LT  +P+ L     ++  L++ +N+L     S      +L+ L + GN
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPA---HITTLVIPDNNLT----SLPALPPELRTLEVSGN 91

Query: 488 HFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQ 547
             +  +P        L             +P     +  L    +  N L   +P     
Sbjct: 92  Q-LTSLPVLPPGLLELSIFSNPLT----HLPALPSGLCKLW---IFGNQLTS-LPVLPPG 142

Query: 548 LDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILAN 607
           L   + L +S N +A  P     +  S L  L   NN+L  ++P      S L+ L +++
Sbjct: 143 L---QELSVSDNQLASLP-----ALPSELCKLWAYNNQLT-SLPM---LPSGLQELSVSD 190

Query: 608 NNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDN-TSLHREEGYYDLIPTYRNEYDI 666
           N     +P    +L KL   +         +P        L                   
Sbjct: 191 NQLA-SLPTLPSELYKLWAYNNRLT----SLPALPSGLKELI------------------ 227

Query: 667 VSYN----VGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELI 722
           VS N    +     E                   L+    L +S N+L   +P     L+
Sbjct: 228 VSGNRLTSLPVLPSE-------------------LKE---LMVSGNRLT-SLPMLPSGLL 264

Query: 723 RIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNAL 772
               L++ RN LT  +P +  +L    +++L  N L+ +    L E+ + 
Sbjct: 265 S---LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  105 bits (263), Expect = 2e-23
 Identities = 68/356 (19%), Positives = 114/356 (32%), Gaps = 79/356 (22%)

Query: 405 NLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNS 464
               L +  +    ++P        +  L + +N LT  +P         L  L +S N 
Sbjct: 41  GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPP----ELRTLEVSGNQ 92

Query: 465 LQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNI 524
           L   L      L +L   +    H    +P   S    L  L+I  N ++ S+P     +
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTH----LPALPSG---LCKLWIFGNQLT-SLPVLPPGL 143

Query: 525 SFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNN 584
             L    + DN L   +P+   +L     L    N +   P+       S L  L + +N
Sbjct: 144 QELS---VSDNQLAS-LPALPSEL---CKLWAYNNQLTSLPML-----PSGLQELSVSDN 191

Query: 585 RLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDN 644
           +L  ++P       +L  L   NN     +P     L++L    +S N  +  +P     
Sbjct: 192 QLA-SLPTLPS---ELYKLWAYNNRLT-SLPALPSGLKEL---IVSGNRLT-SLPVLPSE 242

Query: 645 -TSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGL 703
              L                   VS N   S+                        +  L
Sbjct: 243 LKELM------------------VSGNRLTSLPML------------------PSGLLSL 266

Query: 704 DLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLT 759
            +  N+L   +P  +  L    T+NL  N L+     T   LR++ S       + 
Sbjct: 267 SVYRNQLT-RLPESLIHLSSETTVNLEGNPLS---ERTLQALREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (259), Expect = 5e-23
 Identities = 75/453 (16%), Positives = 138/453 (30%), Gaps = 88/453 (19%)

Query: 200 CELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLIL 259
           C       L +  +  + +LP CL     +  L +PDN LT  L +        +  L +
Sbjct: 37  CLNNGNAVLNVGESG-LTTLPDCL--PAHITTLVIPDNNLTS-LPAL----PPELRTLEV 88

Query: 260 SNNHFQ-IPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSD 318
           S N    +P+         +L IF      +                L  + +       
Sbjct: 89  SGNQLTSLPVLPP---GLLELSIFSNPLTHLPALPSG----------LCKLWIFG----- 130

Query: 319 GGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSR 378
                                 N     P         L+ + +++N L+    LP+   
Sbjct: 131 ----------------------NQLTSLPVLP----PGLQELSVSDNQLASLPALPS--- 161

Query: 379 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNN 438
             +  L    N+L   +P+        L  L++S N    S+P+       L  L   NN
Sbjct: 162 -ELCKLWAYNNQLT-SLPMLPS----GLQELSVSDNQLA-SLPTLPS---ELYKLWAYNN 211

Query: 439 QLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLS 498
           +LT  +P   +     L+ L++S N L   L       ++LK L + GN  +  +P   S
Sbjct: 212 RLT-SLPALPS----GLKELIVSGNRLT-SLPV---LPSELKELMVSGN-RLTSLPMLPS 261

Query: 499 NCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSK 558
               L  L +  N ++  +P  + ++S    + +  N L         ++          
Sbjct: 262 G---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPI 317

Query: 559 NNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYL-ILANNNFEGEVPLR 617
                   +      +      L     +  +P   G  +      +    +      L 
Sbjct: 318 IRFDMAGASAPRETRA------LHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLF 371

Query: 618 LCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHRE 650
           L +L +     +    F  QI   L   +    
Sbjct: 372 LDRLSETE-NFIKDAGFKAQISSWLAQLAEDEA 403

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.5 bits (240), Expect = 1e-20
 Identities = 69/451 (15%), Positives = 131/451 (29%), Gaps = 121/451 (26%)

Query: 76  LSNLKFLDLSHNSFNNSVLSSL--AGLSSLKNLSLAYNRLEGSINIEEL-DSLSNLEGLD 132
            +    L++  +      L++L     + +  L +  N L        L      L  L+
Sbjct: 39  NNGNAVLNVGESG-----LTTLPDCLPAHITTLVIPDNNLT------SLPALPPELRTLE 87

Query: 133 MSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKT 192
           +S N++ +L  P    GL +L         +               L  L++  N     
Sbjct: 88  VSGNQLTSL--PVLPPGLLELSIFSNPLTHLPA---------LPSGLCKLWIFGNQL--- 133

Query: 193 VTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLT 252
              T        LQEL +  N  + SLP   + L  L   +   NQLT  L        +
Sbjct: 134 ---TSLPVLPPGLQELSVSDN-QLASLPALPSELCKLWAYN---NQLTS-LPML----PS 181

Query: 253 SIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKF-QLTSISL 311
            ++ L +S+                         NQ+        +SL     +L  +  
Sbjct: 182 GLQELSVSD-------------------------NQL--------ASLPTLPSELYKLWA 208

Query: 312 SDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPF 371
            +                           N     P+      + L+ +I++ N L+   
Sbjct: 209 YN---------------------------NRLTSLPALP----SGLKELIVSGNRLT--- 234

Query: 372 RLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLI 431
            LP      +  L +S N+L   +P+        L  L++  N     +P S   ++S  
Sbjct: 235 SLPV-LPSELKELMVSGNRLT-SLPMLPS----GLLSLSVYRNQLT-RLPESLIHLSSET 287

Query: 432 YLDLSNNQLTGEIPEHLAMGCFNLEYL--LLSNNSLQGQLFSKKINLTKLKRLNLDGNHF 489
            ++L  N L+    + L        Y   ++  +        +   L       L     
Sbjct: 288 TVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPARE 347

Query: 490 IG----GIPESLSNCSSLQGLYISDNDISGS 516
                           +     +  + +S +
Sbjct: 348 GEPAPADRWHMFGQEDNADAFSLFLDRLSET 378

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.0 bits (218), Expect = 4e-18
 Identities = 64/442 (14%), Positives = 120/442 (27%), Gaps = 122/442 (27%)

Query: 50  QLESLDLSGNNIAGCVENEGLEKL--SGLSNLKFLDLSHNSFNNSVLSSL-AGLSSLKNL 106
               L++  +         GL  L     +++  L +  N+     L+SL A    L+ L
Sbjct: 41  GNAVLNVGES---------GLTTLPDCLPAHITTLVIPDNN-----LTSLPALPPELRTL 86

Query: 107 SLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDG 166
            ++ N+L  S+       L  L         +  L           L  L + G ++   
Sbjct: 87  EVSGNQLT-SLP-VLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLTSL 136

Query: 167 SKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANL 226
                     P L+ L +  N               + L +L+  +N  + SLP      
Sbjct: 137 PV------LPPGLQELSVSDNQL------ASLPALPSELCKLWAYNNQ-LTSLP---MLP 180

Query: 227 TSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRE 286
           + L+ L V DNQL   L + P   L    L   +N    +P         S LK      
Sbjct: 181 SGLQELSVSDNQLAS-LPTLPS-ELYK--LWAYNNRLTSLPALP------SGLKELIVSG 230

Query: 287 NQIFGEIESSHSSLTPKF-QLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGE 345
           N++        +SL     +L  + +S                            N    
Sbjct: 231 NRL--------TSLPVLPSELKELMVSG---------------------------NRLTS 255

Query: 346 FPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPN 405
            P       + L S+ +  N L+                          +P  +   L +
Sbjct: 256 LPMLP----SGLLSLSVYRNQLT-------------------------RLPESLIH-LSS 285

Query: 406 LGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSL 465
              + +  N  +         +  +      +  +        +         L + + L
Sbjct: 286 ETTVNLEGNPLS-ERTLQA--LREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342

Query: 466 QGQLFSKKINLTKLKRLNLDGN 487
                 +     +      + N
Sbjct: 343 VPAREGEPAPADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.1 bits (213), Expect = 2e-17
 Identities = 52/256 (20%), Positives = 86/256 (33%), Gaps = 56/256 (21%)

Query: 48  FQQLESLDLSGNNIAGCVENEGLEKL-SGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNL 106
              + +L +  NN         L  L +    L+ L++S N    S+     GL  L   
Sbjct: 60  PAHITTLVIPDNN---------LTSLPALPPELRTLEVSGNQL-TSLPVLPPGLLELSIF 109

Query: 107 SLAYNRLEGSI-NIEELD-----------SLSNLEGLDMSDNEIDNLVVPKDYRGLRKLR 154
           S     L      + +L                L+ L +SDN++ +L          +L 
Sbjct: 110 SNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASL-----PALPSELC 164

Query: 155 FLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHND 214
            L     ++               L+ L +  N  A   T        + L +L+  +N 
Sbjct: 165 KLWAYNNQLTSLPM------LPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNR 212

Query: 215 FIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHF-QIPMSLEPF 273
              SLP   A  + L+ L V  N+LT  L        + ++ L++S N    +PM     
Sbjct: 213 LT-SLP---ALPSGLKELIVSGNRLTS-LPVL----PSELKELMVSGNRLTSLPMLP--- 260

Query: 274 FNYSKLKIFHGRENQI 289
              S L       NQ+
Sbjct: 261 ---SGLLSLSVYRNQL 273

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 84.2 bits (208), Expect = 7e-17
 Identities = 64/260 (24%), Positives = 92/260 (35%), Gaps = 55/260 (21%)

Query: 44  LFTPFQQLESLDLSGNNIAGCVENEGLEKL-----------SGLSNLKFLDLSHNSFNNS 92
           L     +L        ++       GL KL                L+ L +S N     
Sbjct: 99  LPPGLLELSIFSNPLTHLP--ALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ---- 152

Query: 93  VLSSL-AGLSSLKNLSLAYNRLEGSINIEEL-DSLSNLEGLDMSDNEIDNLVVPKDYRGL 150
            L+SL A  S L  L    N+L        L    S L+ L +SDN++ +L  P     L
Sbjct: 153 -LASLPALPSELCKLWAYNNQL------TSLPMLPSGLQELSVSDNQLASL--PTLPSEL 203

Query: 151 RKLRFLDLSGLRIRDGSKVLHSI-GSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELY 209
            KL   +            L S+      LK L + S N   ++         + L+EL 
Sbjct: 204 YKLWAYNNR----------LTSLPALPSGLKELIV-SGNRLTSLP-----VLPSELKELM 247

Query: 210 IDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMS 269
           +  N  + SLP      + L  L V  NQLT  L  S L+HL+S   + L  N    P+S
Sbjct: 248 VSGN-RLTSLP---MLPSGLLSLSVYRNQLTR-LPES-LIHLSSETTVNLEGN----PLS 297

Query: 270 LEPFFNYSKLKIFHGRENQI 289
                   ++    G    I
Sbjct: 298 ERTLQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.5 bits (188), Expect = 2e-14
 Identities = 58/318 (18%), Positives = 99/318 (31%), Gaps = 95/318 (29%)

Query: 476 LTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDN 535
                 LN+  +  +  +P+ L   + +  L I DN+++ S+P     +  L+   +  N
Sbjct: 39  NNGNAVLNVGESG-LTTLPDCL--PAHITTLVIPDNNLT-SLPALPPELRTLE---VSGN 91

Query: 536 HLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMG 595
            L   +P     L  L I      ++   P          L  L +  N+L  ++P    
Sbjct: 92  QLTS-LPVLPPGLLELSIFSNPLTHLPALPSG--------LCKLWIFGNQLT-SLPV--- 138

Query: 596 RLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDN-TSLHREEGYY 654
                                       L+ L +S N  +  +P        L       
Sbjct: 139 ------------------------LPPGLQELSVSDNQLA-SLPALPSELCKLW------ 167

Query: 655 DLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEI 714
                          N             T+              +  L +S N+L   +
Sbjct: 168 ------------AYNN-----------QLTSLPML-------PSGLQELSVSDNQLA-SL 196

Query: 715 PSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAV 774
           P+   EL +   L    N LT ++P   S L+    L +S N LT  +P    EL  L  
Sbjct: 197 PTLPSELYK---LWAYNNRLT-SLPALPSGLK---ELIVSGNRLTS-LPVLPSELKEL-- 246

Query: 775 FTVAHNNLSGKIPERIAQ 792
             V+ N L+  +P   + 
Sbjct: 247 -MVSGNRLT-SLPMLPSG 262

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.8 bits (181), Expect = 1e-13
 Identities = 44/248 (17%), Positives = 84/248 (33%), Gaps = 63/248 (25%)

Query: 546 CQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLIL 605
           C  +   +L++ ++ +   P        +++ TL + +N L  ++P       +LR L +
Sbjct: 37  CLNNGNAVLNVGESGLTTLPDCL----PAHITTLVIPDNNLT-SLPA---LPPELRTLEV 88

Query: 606 ANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDN-TSLHREEGYYDLIPTYRNEY 664
           + N     +P+    L +L +           +P        L                 
Sbjct: 89  SGNQLT-SLPVLPPGLLELSIFSNPLT----HLPALPSGLCKLW---------------- 127

Query: 665 DIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRI 724
             +  N             T+              +  L +S N+L   +P+   EL + 
Sbjct: 128 --IFGN-----------QLTSLPVL-------PPGLQELSVSDNQL-ASLPALPSELCK- 165

Query: 725 HTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSG 784
             L    N LT ++P+  S L+    L +S N L   +P    EL  L      +N L+ 
Sbjct: 166 --LWAYNNQLT-SLPMLPSGLQ---ELSVSDNQLA-SLPTLPSELYKL---WAYNNRLT- 214

Query: 785 KIPERIAQ 792
            +P   + 
Sbjct: 215 SLPALPSG 222

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 29/179 (16%), Positives = 56/179 (31%), Gaps = 52/179 (29%)

Query: 616 LRLCQLQKLRLLDLSHNNFSGQIPPCLDN--TSLHREEGYYDLIPTYRNEYDIVSYNVGP 673
           +R C      +L++  +  +  +P CL    T+L   +     +P               
Sbjct: 34  MRACLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLPAL------------- 79

Query: 674 SMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNN 733
                                     +  L++S N+L   +P     L+ +   +    +
Sbjct: 80  -----------------------PPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH 115

Query: 734 LTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQ 792
           L        S L     L +  N LT  +P     L  L   +V+ N L+  +P   ++
Sbjct: 116 LPALP----SGLC---KLWIFGNQLT-SLPVLPPGLQEL---SVSDNQLA-SLPALPSE 162

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  109 bits (273), Expect = 4e-25
 Identities = 76/504 (15%), Positives = 145/504 (28%), Gaps = 83/504 (16%)

Query: 77  SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDN 136
            N      +      +   S   L++L +L    + +    ++  ++ L+ L  L  + N
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSN 74

Query: 137 EIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTT 196
            I  L    D      L +L     ++ +       +     L  L   +N       T 
Sbjct: 75  NITTL----DLSQNTNLTYLACDSNKLTN-----LDVTPLTKLTYLNCDTNKL-----TK 120

Query: 197 QGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIEL 256
             + +   L  L    N  +  +   +++ T L  L    N+    L    +   T +  
Sbjct: 121 LDVSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL---DVTPQTQLTT 174

Query: 257 LILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGD 316
           L  S N      +         L   +   N I  +++ + +      QLT +  S    
Sbjct: 175 LDCSFNKI----TELDVSQNKLLNRLNCDTNNIT-KLDLNQNI-----QLTFLDCSS--- 221

Query: 317 SDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTR 376
                               +++++         +   T L     + N L+    L   
Sbjct: 222 ------------------NKLTEID---------VTPLTQLTYFDCSVNPLT---ELDVS 251

Query: 377 SRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLS 436
           +   +  L      L   I      +  N   +                    L  LD  
Sbjct: 252 TLSKLTTLHCIQTDLL-EID-----LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQ 305

Query: 437 NNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPES 496
              +T E+          L YL L+N  L     S   + TKLK L+    H I      
Sbjct: 306 AAGIT-ELDLS---QNPKLVYLYLNNTELTELDVS---HNTKLKSLSCVNAH-IQDFSS- 356

Query: 497 LSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDL 556
           +    +L   + ++          + N S   A+    + L+        +     + D 
Sbjct: 357 VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAV--SPDLLDQFGNPMNIEPGDGGVYDQ 414

Query: 557 SKNNIAGRPLNGAFSKCSYLLTLD 580
           + N I    L+      +Y  T +
Sbjct: 415 ATNTITWENLSTDNPAVTYTFTSE 438

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  105 bits (265), Expect = 4e-24
 Identities = 76/485 (15%), Positives = 149/485 (30%), Gaps = 83/485 (17%)

Query: 45  FTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLK 104
                 L SLD   ++I        +  +  L+ L  L  + N+        L+  ++L 
Sbjct: 38  EEQLATLTSLDCHNSSI------TDMTGIEKLTGLTKLICTSNNITT---LDLSQNTNLT 88

Query: 105 NLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIR 164
            L+   N+L  ++++     L+ L  L+   N++  L    D      L +L+ +   + 
Sbjct: 89  YLACDSNKLT-NLDV---TPLTKLTYLNCDTNKLTKL----DVSQNPLLTYLNCARNTLT 140

Query: 165 DGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLA 224
           +       +     L  L    N       T   +     L  L    N  I  L   ++
Sbjct: 141 E-----IDVSHNTQLTELDCHLNKK----ITKLDVTPQTQLTTLDCSFNK-ITELD--VS 188

Query: 225 NLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHG 284
               L  L+   N +T       L     +  L  S+N       +      ++L  F  
Sbjct: 189 QNKLLNRLNCDTNNIT----KLDLNQNIQLTFLDCSSNKLT---EI-DVTPLTQLTYFDC 240

Query: 285 RENQIFGEIESSHSSLT----PKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDV 340
             N +     S+ S LT     +  L  I L+               H   L +      
Sbjct: 241 SVNPLTELDVSTLSKLTTLHCIQTDLLEIDLT---------------HNTQLIYFQAEGC 285

Query: 341 NMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIG 400
               +     + +NT L  +      ++    L       ++ L ++  +L   + V   
Sbjct: 286 R---KIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELDVSH- 337

Query: 401 KVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLL 460
                L  L+            S G + +L     +  Q               +    L
Sbjct: 338 --NTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI------------TMPKETL 381

Query: 461 SNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTW 520
           +NNSL   +    ++          G+   GG+ +  +N  + + L   +  ++ +  + 
Sbjct: 382 TNNSLTIAVSPDLLDQFGNPMNIEPGD---GGVYDQATNTITWENLSTDNPAVTYTFTSE 438

Query: 521 MGNIS 525
            G I 
Sbjct: 439 NGAIV 443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 94.8 bits (236), Expect = 1e-20
 Identities = 68/444 (15%), Positives = 129/444 (29%), Gaps = 76/444 (17%)

Query: 205 LQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHF 264
                    +   +       L +L  L   ++ +T     + +  LT +  LI ++N+ 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNNI 76

Query: 265 QIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPK 324
                       + L       N+                 LT++ ++            
Sbjct: 77  TTL----DLSQNTNLTYLACDSNK-----------------LTNLDVT------------ 103

Query: 325 FLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIAL 384
                  L ++     N   +     +  N  L  +  A N+L+    +       +  L
Sbjct: 104 ---PLTKLTYLNCDT-NKLTKLD---VSQNPLLTYLNCARNTLT---EIDVSHNTQLTEL 153

Query: 385 DISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEI 444
           D   NK    + V        L  L  SFN               L  L+   N +T ++
Sbjct: 154 DCHLNKKITKLDVT---PQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KL 206

Query: 445 PEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQ 504
             +       L +L  S+N L     +    LT+L   +   N  +  +   +S  S L 
Sbjct: 207 DLN---QNIQLTFLDCSSNKLTEIDVT---PLTQLTYFDCSVNP-LTELD--VSTLSKLT 257

Query: 505 GLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR 564
            L+    D+     T    + +  A              +      L +LD     I   
Sbjct: 258 TLHCIQTDLLEIDLTHNTQLIYFQA-----EGCRKIKELDVTHNTQLYLLDCQAAGIT-- 310

Query: 565 PLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKL 624
                 S+   L+ L L N  L   +   +   ++L+ L   N + + +    + ++  L
Sbjct: 311 --ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPAL 363

Query: 625 RLLDLSHNNFSGQIPPCLDNTSLH 648
                +           L N SL 
Sbjct: 364 NNNFEAEGQTITMPKETLTNNSLT 387

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 92.4 bits (230), Expect = 8e-20
 Identities = 78/468 (16%), Positives = 137/468 (29%), Gaps = 91/468 (19%)

Query: 177 PSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPD 236
            +  +    +       T T    +LA L  L   ++  I  +   +  LT L  L    
Sbjct: 18  DNFASEVAAAFE--MQATDTISEEQLATLTSLDCHNSS-ITDMT-GIEKLTGLTKLICTS 73

Query: 237 NQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESS 296
           N +T    +  L   T++  L   +N      +L      +KL   +   N++     S 
Sbjct: 74  NNIT----TLDLSQNTNLTYLACDSNKLT---NL-DVTPLTKLTYLNCDTNKLTKLDVSQ 125

Query: 297 HSSLT----PKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLE 352
           +  LT     +  LT I +S               H   L  +         +     + 
Sbjct: 126 NPLLTYLNCARNTLTEIDVS---------------HNTQLTELDCHLNKKITKLD---VT 167

Query: 353 NNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTIS 412
             T L ++  + N ++    L     K +  L+   N +   + +        L FL  S
Sbjct: 168 PQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLDLNQ---NIQLTFLDCS 220

Query: 413 FNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSK 472
            N     I      +  L Y D S N LT E+          L  L      L     + 
Sbjct: 221 SNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVS---TLSKLTTLHCIQTDLLEIDLT- 272

Query: 473 KINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIM 532
             + T+L     +G   I  +   +++ + L  L      I+  +               
Sbjct: 273 --HNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELD-------------- 313

Query: 533 PDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPN 592
                         Q   L  L L+   +    +    S  + L +L   N  +  +  +
Sbjct: 314 ------------LSQNPKLVYLYLNNTELTELDV----SHNTKLKSLSCVNAHIQ-DFSS 356

Query: 593 WMGRLSQLRYLILANNNF-----EGEVPLRLCQLQKLRLLDLSHNNFS 635
            +G++  L     A         E      L       LLD   N  +
Sbjct: 357 -VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 91.7 bits (228), Expect = 1e-19
 Identities = 74/430 (17%), Positives = 132/430 (30%), Gaps = 72/430 (16%)

Query: 354 NTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISF 413
           + N  S + A   +     +       + +LD   + +     +E    L  L  L  + 
Sbjct: 17  DDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE---KLTGLTKLICTS 73

Query: 414 NAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKK 473
           N    ++        +L YL   +N+LT      L      L YL    N L     S  
Sbjct: 74  NNIT-TLD--LSQNTNLTYLACDSNKLTNLDVTPLT----KLTYLNCDTNKLTKLDVS-- 124

Query: 474 INLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMP 533
                L  LN   N  +  I   +S+ + L  L    N     +   +   + L  +   
Sbjct: 125 -QNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCS 178

Query: 534 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNW 593
            N +      +  Q   L  L+   NNI         ++   L  LD  +N+L   I   
Sbjct: 179 FNKITE---LDVSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLT-EID-- 228

Query: 594 MGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGY 653
           +  L+QL Y   + N       L +  L KL  L     +        +D T   +   +
Sbjct: 229 VTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLL-----EIDLTHNTQLIYF 280

Query: 654 YDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGE 713
                    E D+                                 ++ LD     +  E
Sbjct: 281 QAEGCRKIKELDVTH----------------------------NTQLYLLDCQAAGIT-E 311

Query: 714 IPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALA 773
           +   + +  ++  L L+   LT  + V  S+  +++SL     ++       + ++ AL 
Sbjct: 312 LD--LSQNPKLVYLYLNNTELT-ELDV--SHNTKLKSLSCVNAHIQ-DFSS-VGKIPALN 364

Query: 774 VFTVAHNNLS 783
               A     
Sbjct: 365 NNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 83.6 bits (207), Expect = 6e-17
 Identities = 81/450 (18%), Positives = 132/450 (29%), Gaps = 73/450 (16%)

Query: 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLT 410
           +E  T L  +I  +N+++    L      N+  L    NKL  ++ V     L  L +L 
Sbjct: 60  IEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLT-NLDVTP---LTKLTYLN 112

Query: 411 ISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLF 470
              N               L YL+ + N LT EI          L  L    N    +L 
Sbjct: 113 CDTNKLT---KLDVSQNPLLTYLNCARNTLT-EIDVS---HNTQLTELDCHLNKKITKLD 165

Query: 471 SKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAI 530
                 T+L  L+   N         +S    L  L    N+I+  +   +     L  +
Sbjct: 166 VT--PQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFL 217

Query: 531 IMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNI 590
               N L      +   L  L   D S N +         S  S L TL      L   I
Sbjct: 218 DCSSNKLTE---IDVTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQTDLL-EI 269

Query: 591 PNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHRE 650
              +   +QL Y          E+ +      +L LLD      + ++     N  L   
Sbjct: 270 D--LTHNTQLIYFQAEGCRKIKELDV--THNTQLYLLDCQAAGIT-ELDLS-QNPKL--- 320

Query: 651 EGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKL 710
                        Y  ++        E   +D +               +  L       
Sbjct: 321 ------------VYLYLNNT------ELTELDVS-----------HNTKLKSLSCVNAH- 350

Query: 711 IGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG---KIPPRLV 767
           I +  S +G++  ++    +          T +N     ++     +  G    I P   
Sbjct: 351 IQDFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDG 409

Query: 768 ELNALAVFTVAHNNLSGKIPERIAQFATFD 797
            +   A  T+   NLS   P     F + +
Sbjct: 410 GVYDQATNTITWENLSTDNPAVTYTFTSEN 439

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 80.9 bits (200), Expect = 4e-16
 Identities = 64/398 (16%), Positives = 120/398 (30%), Gaps = 70/398 (17%)

Query: 389 NKLQGHIPVEIGKVLP--NLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPE 446
           N L+           P  N      +      +   S   + +L  LD  N+ +T ++  
Sbjct: 1   NTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG 59

Query: 447 HLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGL 506
                   L  L+ ++N++     S     T L  L  D N  +  +   ++  + L  L
Sbjct: 60  --IEKLTGLTKLICTSNNITTLDLS---QNTNLTYLACDSNK-LTNLD--VTPLTKLTYL 111

Query: 507 YISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPL 566
               N ++    +    +++L+      N L      +      L  LD   N    +  
Sbjct: 112 NCDTNKLTKLDVSQNPLLTYLN---CARNTLTEI---DVSHNTQLTELDCHLNKKITKL- 164

Query: 567 NGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRL 626
               +  + L TLD   N++   +   + +   L  L    NN      L L Q  +L  
Sbjct: 165 --DVTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNITK---LDLNQNIQLTF 216

Query: 627 LDLSHNNFSG-QIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTT 685
           LD S N  +   + P    T                      S N          +D +T
Sbjct: 217 LDCSSNKLTEIDVTPLTQLTYFD------------------CSVN------PLTELDVST 252

Query: 686 KERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNL 745
                      L  +  L      L+ EI   +    ++             +    ++ 
Sbjct: 253 -----------LSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELD--VTHN 296

Query: 746 RQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
            Q+  LD     +T ++   L +   L    + +  L+
Sbjct: 297 TQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT 331

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  108 bits (272), Expect = 4e-25
 Identities = 57/225 (25%), Positives = 95/225 (42%), Gaps = 16/225 (7%)

Query: 40  LNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAG 99
           +  + F   + LE L LS N+I            +GL+NL  L+L  N        +   
Sbjct: 79  IKVNSFKHLRHLEILQLSRNHIRTIEIG----AFNGLANLNTLELFDNRLTTIPNGAFVY 134

Query: 100 LSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSD-NEIDNLVVPKDYRGLRKLRFLDL 158
           LS LK L L  N +E SI     + + +L  LD+ +   +  +     + GL  LR+L+L
Sbjct: 135 LSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYI-SEGAFEGLSNLRYLNL 192

Query: 159 SGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGS 218
           +   +R+    + ++     L  L L  N+   +         L HLQ+L++  +  I  
Sbjct: 193 AMCNLRE----IPNLTPLIKLDELDLSGNHL--SAIRPGSFQGLMHLQKLWMIQSQ-IQV 245

Query: 219 LPWC-LANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNN 262
           +      NL SL  +++  N LT  L       L  +E + L +N
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  102 bits (257), Expect = 3e-23
 Identities = 61/237 (25%), Positives = 93/237 (39%), Gaps = 15/237 (6%)

Query: 404 PNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN 463
            N   L +  N       +SF  +  L  L LS N +   I      G  NL  L L +N
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122

Query: 464 ---SLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESL-SNCSSLQGLYISD-NDISGSIP 518
              ++    F     L+KLK L L  N  I  IP    +   SL+ L + +   +S  I 
Sbjct: 123 RLTTIPNGAFV---YLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLS-YIS 177

Query: 519 TWM-GNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLL 577
                 +S L  + +   +L   IP+    L  L+ LDLS N+++     G+F    +L 
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLRE-IPN-LTPLIKLDELDLSGNHLSAIR-PGSFQGLMHLQ 234

Query: 578 TLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNF 634
            L +  +++     N    L  L  + LA+NN           L  L  + L HN +
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 15/216 (6%)

Query: 77  SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDN 136
           +N + L+L  N      ++S   L  L+ L L+ N +  +I I   + L+NL  L++ DN
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122

Query: 137 EIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTLYLKSNNFAKTV 193
            +  +     +  L KL+ L L    I      + S  +F   PSL+ L L        +
Sbjct: 123 RLTTI-PNGAFVYLSKLKELWLRNNPIES----IPS-YAFNRIPSLRRLDLGELKRLSYI 176

Query: 194 TTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTS 253
            +      L++L+ L +   + +  +P  L  L  L  L +  N L+  +       L  
Sbjct: 177 -SEGAFEGLSNLRYLNLAMCN-LREIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMH 232

Query: 254 IELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQI 289
           ++ L +  +  Q+ +    F N   L   +   N +
Sbjct: 233 LQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.4 bits (222), Expect = 6e-19
 Identities = 55/239 (23%), Positives = 90/239 (37%), Gaps = 38/239 (15%)

Query: 351 LENNTNLRSIILANNSLSGPFRLPTRS---RKNIIALDISYNKLQGHIPVEIGKVLPNLG 407
            ++  +L  + L+ N +     +   +     N+  L++  N+L   IP      L  L 
Sbjct: 84  FKHLRHLEILQLSRNHIR---TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLK 139

Query: 408 FLTISFNAFNGSIPSSFGDMNSLIYLDLS-NNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ 466
            L +  N        +F  + SL  LDL    +L+  I E    G  NL YL L+  +L+
Sbjct: 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLR 198

Query: 467 G-QLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNIS 525
                +    L KL  L+L GNH     P S      LQ L++  + I   I        
Sbjct: 199 EIPNLT---PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIE------- 247

Query: 526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNN 584
                            + F  L  L  ++L+ NN+   P +  F+   +L  + L +N
Sbjct: 248 ----------------RNAFDNLQSLVEINLAHNNLTLLP-HDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 85.6 bits (212), Expect = 1e-17
 Identities = 54/293 (18%), Positives = 100/293 (34%), Gaps = 65/293 (22%)

Query: 176 FPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPW-CLANLTSLRVLHV 234
             + + L L  N     +        L HL+ L +  N  I ++       L +L  L +
Sbjct: 63  STNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLEL 119

Query: 235 PDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIE 294
            DN+LT  + +   ++L+ ++ L L NN                                
Sbjct: 120 FDNRLTT-IPNGAFVYLSKLKELWLRNN-------------------------------- 146

Query: 295 SSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENN 354
                      + SI                +     L+   + ++           E  
Sbjct: 147 ----------PIESIPSY---------AFNRIPSLRRLD---LGELKRLSYISEGAFEGL 184

Query: 355 TNLRSIILANNSLSGPFRLPT-RSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISF 413
           +NLR + LA  +L     +P       +  LD+S N L   I     + L +L  L +  
Sbjct: 185 SNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQ 240

Query: 414 NAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ 466
           +       ++F ++ SL+ ++L++N LT  +P  L     +LE + L +N   
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 69/298 (23%), Positives = 108/298 (36%), Gaps = 72/298 (24%)

Query: 493 IPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE 552
           +P+ +S  ++ + L + +N I   I                         + F  L +LE
Sbjct: 58  VPDGIS--TNTRLLNLHENQIQ-IIK-----------------------VNSFKHLRHLE 91

Query: 553 ILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEG 612
           IL LS+N+I      GAF+  + L TL+L +NRL          LS+L+ L L NN  E 
Sbjct: 92  ILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE- 149

Query: 613 EVPLRL-CQLQKLRLLDLSHNNFSGQIPP----CLDN-TSLHREEGYYDLIPTYRNEYDI 666
            +P     ++  LR LDL        I       L N   L+        IP        
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTP---- 205

Query: 667 VSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRI-GELIRIH 725
                                         L  +  LDLS N  +  I       L+ + 
Sbjct: 206 ------------------------------LIKLDELDLSGNH-LSAIRPGSFQGLMHLQ 234

Query: 726 TLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVE-LNALAVFTVAHNNL 782
            L + ++ +       F NL+ +  ++L++NNLT  +P  L   L+ L    + HN  
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.8 bits (197), Expect = 9e-16
 Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 9/147 (6%)

Query: 43  SLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSS 102
             F     L  LDL        +         GLSNL++L+L+  +     + +L  L  
Sbjct: 154 YAFNRIPSLRRLDLGELKRLSYISEGAF---EGLSNLRYLNLAMCNLRE--IPNLTPLIK 208

Query: 103 LKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLR 162
           L  L L+ N L  +I       L +L+ L M  ++I   +    +  L+ L  ++L+   
Sbjct: 209 LDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNN 266

Query: 163 IRDGSKVLHSIGSFPSLKTLYLKSNNF 189
           +               L+ ++L  N +
Sbjct: 267 LT--LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 695 QPLESIHGLDLSCNKLIGEIPSRI-GELIRIHTLNLSRNNLTGTIPV-TFSNLRQVESLD 752
             L  +  L L  N  I  IPS     +  +  L+L        I    F  L  +  L+
Sbjct: 133 VYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191

Query: 753 LSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
           L+  NL  +IP  L  L  L    ++ N+LS
Sbjct: 192 LAMCNLR-EIPN-LTPLIKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 695 QPLESIHGLDLSCNKLIGEIPSRI-GELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDL 753
           + L  +  L LS N  I  I       L  ++TL L  N LT      F  L +++ L L
Sbjct: 85  KHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143

Query: 754 SYNNLTGKIPPRL-VELNALAVFTVAHNNLSGKIPERI 790
             N +   IP      + +L    +        I E  
Sbjct: 144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 705 LSCNKL-IGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIP 763
           + C +  + E+P  I    R   LNL  N +      +F +LR +E L LS N++   I 
Sbjct: 48  VICVRKNLREVPDGISTNTR--LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIE 104

Query: 764 PR-LVELNALAVFTVAHNNLS 783
                 L  L    +  N L+
Sbjct: 105 IGAFNGLANLNTLELFDNRLT 125

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  107 bits (269), Expect = 1e-24
 Identities = 52/234 (22%), Positives = 97/234 (41%), Gaps = 34/234 (14%)

Query: 40  LNFSLFTPFQQLESLDLSGNNI----AGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLS 95
           +    F     LE L L  N+I     G          +GL++L  L+L  N      L+
Sbjct: 90  IQADTFRHLHHLEVLQLGRNSIRQIEVGA--------FNGLASLNTLELFDNW-----LT 136

Query: 96  SL-----AGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSD-NEIDNLVVPKDYRG 149
            +       LS L+ L L  N +E SI     + + +L  LD+ +  +++ +     + G
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYI-SEGAFEG 194

Query: 150 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELY 209
           L  L++L+L    I+D    + ++     L+ L +  N+F            L+ L++L+
Sbjct: 195 LFNLKYLNLGMCNIKD----MPNLTPLVGLEELEMSGNHF--PEIRPGSFHGLSSLKKLW 248

Query: 210 IDHNDFIGSLPWC-LANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNN 262
           + ++  +  +       L SL  L++  N L+ +L       L  +  L L +N
Sbjct: 249 VMNSQ-VSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  101 bits (254), Expect = 7e-23
 Identities = 55/236 (23%), Positives = 93/236 (39%), Gaps = 13/236 (5%)

Query: 404 PNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN 463
            N  +L +  N        +F  ++ L  L L  N +  +I      G  +L  L L +N
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN 133

Query: 464 ---SLQGQLFSKKINLTKLKRLNLDGNHFIGGIPE-SLSNCSSLQGLYISD-NDISGSIP 518
               +    F     L+KL+ L L  N  I  IP  + +   SL  L + +   +     
Sbjct: 134 WLTVIPSGAFE---YLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 519 TWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLT 578
                +  L  + +   +++  +P+    L  LE L++S N+       G+F   S L  
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKK 246

Query: 579 LDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNF 634
           L + N++++    N    L+ L  L LA+NN           L+ L  L L HN +
Sbjct: 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 48/216 (22%), Positives = 86/216 (39%), Gaps = 15/216 (6%)

Query: 77  SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDN 136
           SN ++L+L  N+       +   L  L+ L L  N +   I +   + L++L  L++ DN
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN 133

Query: 137 EIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTLYLKSNNFAKTV 193
            +  +     +  L KLR L L    I      + S  +F   PSL  L L      + +
Sbjct: 134 WLTVI-PSGAFEYLSKLRELWLRNNPIES----IPS-YAFNRVPSLMRLDLGELKKLEYI 187

Query: 194 TTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTS 253
            +      L +L+ L +   + I  +P  L  L  L  L +  N   E +       L+S
Sbjct: 188 -SEGAFEGLFNLKYLNLGMCN-IKDMPN-LTPLVGLEELEMSGNHFPE-IRPGSFHGLSS 243

Query: 254 IELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQI 289
           ++ L + N+   + +    F   + L   +   N +
Sbjct: 244 LKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.4 bits (222), Expect = 8e-19
 Identities = 60/248 (24%), Positives = 97/248 (39%), Gaps = 44/248 (17%)

Query: 345 EFPSWLLENNTNLRSIILANNSLS----GPFR-LPTRSRKNIIALDISYNKLQGHIPVEI 399
              +    +  +L  + L  NS+     G F  L      ++  L++  N L   IP   
Sbjct: 89  MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA-----SLNTLELFDNWLT-VIPSGA 142

Query: 400 GKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSN-NQLTGEIPEHLAMGCFNLEYL 458
            + L  L  L +  N        +F  + SL+ LDL    +L   I E    G FNL+YL
Sbjct: 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYL 201

Query: 459 LLSNNSLQG-QLFSKKINLTKLKRLNLDGNHFIGGIPE-SLSNCSSLQGLYISDNDISGS 516
            L   +++     +    L  L+ L + GNH    I   S    SSL+ L++ ++ +S  
Sbjct: 202 NLGMCNIKDMPNLT---PLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVS-L 256

Query: 517 IPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYL 576
           I                         + F  L  L  L+L+ NN++  P +  F+   YL
Sbjct: 257 IE-----------------------RNAFDGLASLVELNLAHNNLSSLP-HDLFTPLRYL 292

Query: 577 LTLDLCNN 584
           + L L +N
Sbjct: 293 VELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.8 bits (210), Expect = 3e-17
 Identities = 63/313 (20%), Positives = 103/313 (32%), Gaps = 73/313 (23%)

Query: 478 KLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHL 537
           +  ++          +P+ +   S+ + L + +N+I   I                    
Sbjct: 55  QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQ-MIQ------------------- 91

Query: 538 EGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRL 597
                  F  L +LE+L L +N+I      GAF+  + L TL+L +N L          L
Sbjct: 92  ----ADTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLTVIPSGAFEYL 146

Query: 598 SQLRYLILANNNFEGEVPLR-LCQLQKLRLLDLSHNNFSGQIPP----CLDN-TSLHREE 651
           S+LR L L NN  E  +P     ++  L  LDL        I       L N   L+   
Sbjct: 147 SKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205

Query: 652 GYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLI 711
                +P                                      L  +  L++S N   
Sbjct: 206 CNIKDMPNLTP----------------------------------LVGLEELEMSGNH-F 230

Query: 712 GEIPSR-IGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVE-L 769
            EI       L  +  L +  + ++      F  L  +  L+L++NNL+  +P  L   L
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPL 289

Query: 770 NALAVFTVAHNNL 782
             L    + HN  
Sbjct: 290 RYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.0 bits (208), Expect = 5e-17
 Identities = 52/293 (17%), Positives = 90/293 (30%), Gaps = 65/293 (22%)

Query: 176 FPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSL-PWCLANLTSLRVLHV 234
             + + L L  NN    +        L HL+ L +  N  I  +       L SL  L +
Sbjct: 74  PSNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLEL 130

Query: 235 PDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIE 294
            DN LT  + S    +L+ +  L L NN                                
Sbjct: 131 FDNWLTV-IPSGAFEYLSKLRELWLRNN-------------------------------- 157

Query: 295 SSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENN 354
                      + SI                      L  + + ++           E  
Sbjct: 158 ----------PIESIP------------SYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195

Query: 355 TNLRSIILANNSLSGPFRLPT-RSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISF 413
            NL+ + L   ++     +P       +  L++S N     I       L +L  L +  
Sbjct: 196 FNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMN 251

Query: 414 NAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ 466
           +  +    ++F  + SL+ L+L++N L+  +P  L      L  L L +N   
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.8 bits (197), Expect = 9e-16
 Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 9/147 (6%)

Query: 43  SLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSS 102
             F     L  LDL        +         GL NLK+L+L   +  +  + +L  L  
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISEGAF---EGLFNLKYLNLGMCNIKD--MPNLTPLVG 219

Query: 103 LKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLR 162
           L+ L ++ N     I       LS+L+ L + ++++   +    + GL  L  L+L+   
Sbjct: 220 LEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNN 277

Query: 163 IRDGSKVLHSIGSFPSLKTLYLKSNNF 189
           +   S           L  L+L  N +
Sbjct: 278 LS--SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.6 bits (116), Expect = 7e-06
 Identities = 43/215 (20%), Positives = 66/215 (30%), Gaps = 46/215 (21%)

Query: 576 LLTLDLCNNRLN---GNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHN 632
              +      L+     IP      S  RYL L  NN +         L  L +L L  N
Sbjct: 56  FSKVVCTRRGLSEVPQGIP------SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 633 NFSGQIPP-CLDN-TSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSY 690
           +   QI     +   SL+      +L   + N   ++               F       
Sbjct: 110 SIR-QIEVGAFNGLASLN----TLEL---FDNWLTVIPSGA-----------F------- 143

Query: 691 TYKGQPLESIHGLDLSCNKLIGEIPSRI-GELIRIHTLNLSRNNLTGTIPV-TFSNLRQV 748
               + L  +  L L  N  I  IPS     +  +  L+L        I    F  L  +
Sbjct: 144 ----EYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198

Query: 749 ESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
           + L+L   N+     P L  L  L    ++ N+  
Sbjct: 199 KYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFP 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 4/98 (4%)

Query: 695 QPLESIHGLDLSCNKLIGEIPSRI-GELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDL 753
           + L  +  L L  N  I +I       L  ++TL L  N LT      F  L ++  L L
Sbjct: 96  RHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154

Query: 754 SYNNLTGKIPPR-LVELNALAVFTVAHNNLSGKIPERI 790
             N +   IP      + +L    +        I E  
Sbjct: 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  105 bits (263), Expect = 1e-24
 Identities = 65/299 (21%), Positives = 113/299 (37%), Gaps = 33/299 (11%)

Query: 356 NLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNA 415
           +LR +  ++  L     +P     +   LD+  N +   +  +  K L +L  L +  N 
Sbjct: 34  HLRVVQCSDLGLK---AVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNK 89

Query: 416 FNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF-NLEYLLLSNN---SLQGQLFS 471
            +     +F  +  L  L +S N L  EIP +L      +L  L + +N    +   +FS
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL----PSSLVELRIHDNRIRKVPKGVFS 144

Query: 472 KKINLTKLKRLNLDGNHF-IGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAI 530
               L  +  + + GN     G      +   L  L IS+  ++  IP        L+ +
Sbjct: 145 ---GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPETLNEL 198

Query: 531 IMPDNHLEGPIPSE-FCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGN 589
            +  N ++  I  E   +   L  L L  N I     NG+ S    L  L L NN+L+  
Sbjct: 199 HLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIE-NGSLSFLPTLRELHLDNNKLS-R 255

Query: 590 IPNWMGRLSQLRYLILANNNFEGEVP-------LRLCQLQKLRLLDLSHNNFS-GQIPP 640
           +P  +  L  L+ + L  NN   +V            +      + L +N     ++ P
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (257), Expect = 6e-24
 Identities = 61/279 (21%), Positives = 105/279 (37%), Gaps = 22/279 (7%)

Query: 362 LANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIP 421
           L +   +     P     ++  +  S   L+  +P EI    P+   L +  N  +    
Sbjct: 16  LDSLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRK 71

Query: 422 SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKINLTK 478
             F  +  L  L L NN+++ +I E        L+ L +S N    +   L S       
Sbjct: 72  DDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS------ 124

Query: 479 LKRLNLDGNHFIGGIPE-SLSNCSSLQGLYISDNDI-SGSIPTWMGNISFLDAIIMPDNH 536
           L  L +  N  I  +P+   S   ++  + +  N + +        +   L+ + + +  
Sbjct: 125 LVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183

Query: 537 LEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGR 596
           L G IP +    + L  L L  N I          + S L  L L +N++       +  
Sbjct: 184 LTG-IPKDL--PETLNELHLDHNKIQAIE-LEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239

Query: 597 LSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635
           L  LR L L NN     VP  L  L+ L+++ L  NN +
Sbjct: 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 95.1 bits (237), Expect = 3e-21
 Identities = 54/248 (21%), Positives = 102/248 (41%), Gaps = 27/248 (10%)

Query: 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLT 410
                 L+ + ++ N L     +P     +++ L I  N+++  +P  +   L N+  + 
Sbjct: 98  FSPLRKLQKLYISKNHLV---EIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIE 153

Query: 411 ISFNAFNGSI--PSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ-- 466
           +  N    S   P +F  +  L YL +S  +LT  IP+ L      L  L L +N +Q  
Sbjct: 154 MGGNPLENSGFEPGAFDGLK-LNYLRISEAKLT-GIPKDLPE---TLNELHLDHNKIQAI 208

Query: 467 -GQLFSKKINLTKLKRLNLDGNHFIGGIPE-SLSNCSSLQGLYISDNDISGSIPTWMGNI 524
             +        +KL RL L  N  I  I   SLS   +L+ L++ +N +S  +P  + ++
Sbjct: 209 ELEDLL---RYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263

Query: 525 SFLDAIIMPDNHLEGPIPSEFCQLD------YLEILDLSKNNIAGRPL-NGAFSKCSYLL 577
             L  + +  N++     ++FC +       Y   + L  N +    +    F   +  L
Sbjct: 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

Query: 578 TLDLCNNR 585
            +   N +
Sbjct: 324 AIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.3 bits (235), Expect = 5e-21
 Identities = 59/273 (21%), Positives = 97/273 (35%), Gaps = 31/273 (11%)

Query: 351 LENNTNLRSIILANNSLS----GPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNL 406
            +   +L +++L NN +S      F       + +  L IS N L   IP     +  +L
Sbjct: 74  FKGLQHLYALVLVNNKISKIHEKAFS----PLRKLQKLYISKNHLV-EIPPN---LPSSL 125

Query: 407 GFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN--- 463
             L I  N         F  + ++  +++  N L     E  A     L YL +S     
Sbjct: 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185

Query: 464 SLQGQLFSKKINLTKLKRLNLDGNHFIGGIPE-SLSNCSSLQGLYISDNDISGSIPTWMG 522
            +   L         L  L+LD N  I  I    L   S L  L +  N I       + 
Sbjct: 186 GIPKDLPE------TLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238

Query: 523 NISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLN-----GAFSKCSYLL 577
            +  L  + + +N L   +P+    L  L+++ L  NNI    +N     G   K +Y  
Sbjct: 239 FLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297

Query: 578 TLDLCNNRL-NGNIPNWMGR-LSQLRYLILANN 608
            + L NN +    +     R ++    +   N 
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 81.6 bits (202), Expect = 1e-16
 Identities = 70/350 (20%), Positives = 109/350 (31%), Gaps = 84/350 (24%)

Query: 429 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKINLTKLKRLNLD 485
            L  +  S+  L   +P+ ++    +   L L NN    L+   F     L  L  L L 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISP---DTTLLDLQNNDISELRKDDFK---GLQHLYALVLV 86

Query: 486 GNHFIGGIPE-SLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSE 544
            N  I  I E + S    LQ LYIS N +                           IP  
Sbjct: 87  NNK-ISKIHEKAFSPLRKLQKLYISKNHLVE-------------------------IPPN 120

Query: 545 FCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRL-NGNIPNWMGRLSQLRYL 603
                 L  L +  N I   P  G FS    +  +++  N L N           +L YL
Sbjct: 121 --LPSSLVELRIHDNRIRKVP-KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL 177

Query: 604 ILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCL--DNTSLHREEGYYDLIPTYR 661
            ++       +P  L   + L  L L HN     I        + L+R      L     
Sbjct: 178 RISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYR----LGL---GH 226

Query: 662 NEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGEL 721
           N+  ++                             L ++  L L  NKL   +P+ + +L
Sbjct: 227 NQIRMIENGS-----------L-----------SFLPTLRELHLDNNKLS-RVPAGLPDL 263

Query: 722 IRIHTLNLSRNNLTGTIPVTFSNLR------QVESLDLSYNNLT-GKIPP 764
             +  + L  NN+T      F  +           + L  N +   ++ P
Sbjct: 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 49/237 (20%), Positives = 84/237 (35%), Gaps = 38/237 (16%)

Query: 77  SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDN 136
            +   LDL +N  +        GL  L  L L  N++   I+ +    L  L+ L +S N
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKN 112

Query: 137 EIDNL-------------------VVPKDY-RGLRKLRFLDLSGLRIRDGSKVLHSIGSF 176
            +  +                    VPK    GLR +  +++ G  + +        G+F
Sbjct: 113 HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG---FEPGAF 169

Query: 177 --PSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP-WCLANLTSLRVLH 233
               L  L +                    L EL++DHN  I ++    L   + L  L 
Sbjct: 170 DGLKLNYLRISEAKLTGIPKDL-----PETLNELHLDHNK-IQAIELEDLLRYSKLYRLG 223

Query: 234 VPDNQLTENLSSSPLMHLTSIELLILSNNHFQ-IPMSLEPFFNYSKLKIFHGRENQI 289
           +  NQ+   + +  L  L ++  L L NN    +P       +   L++ +   N I
Sbjct: 224 LGHNQIR-MIENGSLSFLPTLRELHLDNNKLSRVP---AGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 38/202 (18%), Positives = 77/202 (38%), Gaps = 17/202 (8%)

Query: 43  SLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSS 102
            +F+  + +  +++ GN +       G     GL  L +L +S       +   L    +
Sbjct: 141 GVFSGLRNMNCIEMGGNPLENSGFEPGA--FDGL-KLNYLRISEAKL-TGIPKDL--PET 194

Query: 103 LKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLR 162
           L  L L +N+++ +I +E+L   S L  L +  N+I  +        L  LR L L   +
Sbjct: 195 LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMI-ENGSLSFLPTLRELHLDNNK 252

Query: 163 IRDGSKVLHSIGSFPSLKTLYLKSNNF----AKTVTTTQGLCELAHLQELYIDHN--DFI 216
           +   S+V   +     L+ +YL +NN                + A+   + + +N   + 
Sbjct: 253 L---SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309

Query: 217 GSLPWCLANLTSLRVLHVPDNQ 238
              P     +T    +   + +
Sbjct: 310 EVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 57/291 (19%), Positives = 102/291 (35%), Gaps = 47/291 (16%)

Query: 498 SNCS-SLQGLYISDNDISGSIPTWM-GNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILD 555
             C   L+ +  SD  +  ++P  +  + + LD   + +N +      +F  L +L  L 
Sbjct: 29  FGCHCHLRVVQCSDLGLK-AVPKEISPDTTLLD---LQNNDISELRKDDFKGLQHLYALV 84

Query: 556 LSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVP 615
           L  N I+      AFS    L  L +  N L   IP      S L  L + +N       
Sbjct: 85  LVNNKISKIH-EKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIRKVPK 140

Query: 616 LRLCQLQKLRLLDLSHNNF-SGQIPP-CLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGP 673
                L+ +  +++  N   +    P   D   L+    Y  +      +   +  ++  
Sbjct: 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN----YLRI---SEAKLTGIPKDL-- 191

Query: 674 SMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRI-GELIRIHTLNLSRN 732
                                   E+++ L L  NK I  I         +++ L L  N
Sbjct: 192 -----------------------PETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHN 227

Query: 733 NLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
            +      + S L  +  L L  N L+ ++P  L +L  L V  +  NN++
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 67/398 (16%), Positives = 120/398 (30%), Gaps = 99/398 (24%)

Query: 69  GLEKLSGLSNLKFLDLSHNS--------FNNSVLSSLAGLSS--------LKNLSLAYNR 112
           G E  SG+ +L  L  ++++            V  S  GL +           L L  N 
Sbjct: 6   GAETTSGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNND 65

Query: 113 LEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHS 172
           +   +  ++   L +L  L + +N+I   +  K +  LRKL+ L +S   + +       
Sbjct: 66  IS-ELRKDDFKGLQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYISKNHLVEIPP---- 119

Query: 173 IGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVL 232
                SL  L +  N   K                  +    F        + L ++  +
Sbjct: 120 -NLPSSLVELRIHDNRIRK------------------VPKGVF--------SGLRNMNCI 152

Query: 233 HVPDNQLTENLSSSPLMHLTSIELLILSNNHF-QIPMSLEPFFNYSKLKIFHGRENQIFG 291
            +  N L  +           +  L +S      IP  L        L   H   N+I  
Sbjct: 153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL-----PETLNELHLDHNKI-- 205

Query: 292 EIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLL 351
                           +I L D            L     L  + +   N      +  L
Sbjct: 206 ---------------QAIELED------------LLRYSKLYRLGLGH-NQIRMIENGSL 237

Query: 352 ENNTNLRSIILANNSLSGPFRLPT--RSRKNIIALDISYNKLQGHIP------VEIGKVL 403
                LR + L NN LS   R+P      K +  + +  N +   +       V  G   
Sbjct: 238 SFLPTLRELHLDNNKLS---RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKR 293

Query: 404 PNLGFLTISFN--AFNGSIPSSFGDMNSLIYLDLSNNQ 439
                +++  N   +    P++F  +   + +   N +
Sbjct: 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  103 bits (259), Expect = 2e-24
 Identities = 50/232 (21%), Positives = 97/232 (41%), Gaps = 24/232 (10%)

Query: 70  LEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLE 129
           +      +     +L   S  +    +   L+S+  +    + ++   +++ +  L N+ 
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVT 71

Query: 130 GLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 189
            L ++ N++ ++   K    L+ L +L L   +++D    L S+     LK+L L+ N  
Sbjct: 72  KLFLNGNKLTDI---KPLANLKNLGWLFLDENKVKD----LSSLKDLKKLKSLSLEHNG- 123

Query: 190 AKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLM 249
              ++   GL  L  L+ LY+ +N  I  +   L+ LT L  L + DNQ++      PL 
Sbjct: 124 ---ISDINGLVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQIS---DIVPLA 175

Query: 250 HLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLT 301
            LT ++ L LS NH      L        L +      +   +  +  S+L 
Sbjct: 176 GLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLV 224

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  103 bits (258), Expect = 3e-24
 Identities = 51/253 (20%), Positives = 97/253 (38%), Gaps = 25/253 (9%)

Query: 29  LLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNS 88
            +  N+      +         ++ +  + ++I      + ++ +  L N+  L L+ N 
Sbjct: 26  TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI------KSVQGIQYLPNVTKLFLNGN- 78

Query: 89  FNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYR 148
              + +  LA L +L  L L  N+++   ++  L  L  L+ L +  N I ++       
Sbjct: 79  -KLTDIKPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGISDI---NGLV 131

Query: 149 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQEL 208
            L +L  L L   +I D    +  +     L TL L+ N     ++    L  L  LQ L
Sbjct: 132 HLPQLESLYLGNNKITD----ITVLSRLTKLDTLSLEDNQ----ISDIVPLAGLTKLQNL 183

Query: 209 YIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPM 268
           Y+  N  I  L   LA L +L VL +   +   N   +   +L     +  ++     P 
Sbjct: 184 YLSKNH-ISDLR-ALAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSLVTPE 240

Query: 269 SLEPFFNYSKLKI 281
            +    +Y K  +
Sbjct: 241 IISDDGDYEKPNV 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  100 bits (251), Expect = 2e-23
 Identities = 49/215 (22%), Positives = 97/215 (45%), Gaps = 27/215 (12%)

Query: 48  FQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLS 107
           F +    +L   ++            + L+++  +  +++   +  +  +  L ++  L 
Sbjct: 23  FAETIKDNLKKKSV------TDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 108 LAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGS 167
           L  N+L    +I+ L +L NL  L + +N++ +L   KD   L+KL+ L L    I D  
Sbjct: 75  LNGNKLT---DIKPLANLKNLGWLFLDENKVKDLSSLKD---LKKLKSLSLEHNGISD-- 126

Query: 168 KVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLT 227
             ++ +   P L++LYL +N     +T    L  L  L  L ++ N  I  +   LA LT
Sbjct: 127 --INGLVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQ-ISDIV-PLAGLT 178

Query: 228 SLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNN 262
            L+ L++  N ++       L  L ++++L L + 
Sbjct: 179 KLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQ 210

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.5 bits (186), Expect = 5e-15
 Identities = 50/253 (19%), Positives = 95/253 (37%), Gaps = 29/253 (11%)

Query: 118 NIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFP 177
            I   D+ +     ++    + + V   +   L  +  +  +   I+     +  I   P
Sbjct: 16  QIFSDDAFAETIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIKS----VQGIQYLP 68

Query: 178 SLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDN 237
           ++  L+L  N     +T  + L  L +L  L++D N  +  L   L +L  L+ L +  N
Sbjct: 69  NVTKLFLNGNK----LTDIKPLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSLEHN 122

Query: 238 QLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSH 297
            +++    + L+HL  +E L L NN       +      +KL      +NQI     S  
Sbjct: 123 GISDI---NGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQI-----SDI 171

Query: 298 SSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNL 357
             L    +L ++ LS +  SD     + L    +L+ + +         P     N    
Sbjct: 172 VPLAGLTKLQNLYLSKNHISD----LRALAGLKNLDVLELFS-QECLNKPINHQSNLVVP 226

Query: 358 RSIILANNSLSGP 370
            ++   + SL  P
Sbjct: 227 NTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 50/264 (18%), Positives = 90/264 (34%), Gaps = 51/264 (19%)

Query: 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLT 410
            +         L   S++           +I  +  + + ++    ++    LPN+  L 
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQ---YLPNVTKLF 74

Query: 411 ISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLF 470
           ++ N     I     ++ +L +L L  N++  ++   L      L+ L L +N +     
Sbjct: 75  LNGNKLT-DI-KPLANLKNLGWLFLDENKVK-DL-SSLK-DLKKLKSLSLEHNGI----- 124

Query: 471 SKKI----NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISF 526
              I    +L +L+ L L  N  I  I   LS  + L  L + DN IS        +I  
Sbjct: 125 -SDINGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQIS--------DIVP 173

Query: 527 LDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRL 586
           L                    L  L+ L LSKN+I+      A +    L  L+L +   
Sbjct: 174 LA------------------GLTKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQEC 212

Query: 587 NGNIPNWMGRLSQLRYLILANNNF 610
                N    L     +   + + 
Sbjct: 213 LNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 49/235 (20%), Positives = 86/235 (36%), Gaps = 42/235 (17%)

Query: 401 KVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLL 460
                     +   +       +  ++NS+  +  +N+ +   + + +     N+  L L
Sbjct: 21  DAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SV-QGIQ-YLPNVTKLFL 75

Query: 461 SNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTW 520
           + N L         NL  L  L LD N  +  +  SL +   L+ L +  N IS      
Sbjct: 76  NGNKLTD--IKPLANLKNLGWLFLDENK-VKDL-SSLKDLKKLKSLSLEHNGIS------ 125

Query: 521 MGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLD 580
             +I+ L                    L  LE L L  N I         S+ + L TL 
Sbjct: 126 --DINGLV------------------HLPQLESLYLGNNKITDIT---VLSRLTKLDTLS 162

Query: 581 LCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635
           L +N+++ +I    G L++L+ L L+ N+      L    L+ L +L+L      
Sbjct: 163 LEDNQIS-DIVPLAG-LTKLQNLYLSKNHISDLRALA--GLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 14/190 (7%)

Query: 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLT 410
           ++   N+  + L  N L+    L   + KN+  L +  NK++    ++    L  L  L+
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIKPL--ANLKNLGWLFLDENKVKDLSSLKD---LKKLKSLS 118

Query: 411 ISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLF 470
           +  N    S  +    +  L  L L NN++T      L+     L+ L L +N +     
Sbjct: 119 LEHNGI--SDINGLVHLPQLESLYLGNNKIT--DITVLS-RLTKLDTLSLEDNQISD--I 171

Query: 471 SKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAI 530
                LTKL+ L L  NH I  +  +L+   +L  L +   +          N+   + +
Sbjct: 172 VPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 531 IMPDNHLEGP 540
              D  L  P
Sbjct: 230 KNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 14/173 (8%)

Query: 475 NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPD 534
              +  + NL           + +  +S+  +  +++DI  S+   +  +  +  + +  
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 77

Query: 535 NHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWM 594
           N L          L  L  L L +N +  + L+        L +L L +N ++ +I   +
Sbjct: 78  NKLTDI--KPLANLKNLGWLFLDENKV--KDLSS-LKDLKKLKSLSLEHNGIS-DING-L 130

Query: 595 GRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSL 647
             L QL  L L NN       L   +L KL  L L  N  S  I P    T L
Sbjct: 131 VHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVPLAGLTKL 180

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 44/278 (15%), Positives = 88/278 (31%), Gaps = 69/278 (24%)

Query: 495 ESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEIL 554
            S    +      +    ++        +    +                  +L+ ++ +
Sbjct: 18  FSDDAFAETIKDNLKKKSVT--------DAVTQN------------------ELNSIDQI 51

Query: 555 DLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEV 614
             + ++I  + + G       +  L L  N+L  +I   +  L  L +L L  N  +   
Sbjct: 52  IANNSDI--KSVQG-IQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVKDLS 106

Query: 615 PLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPS 674
            L    L+KL+ L L HN  S  I   +    L               E   +  N    
Sbjct: 107 SL--KDLKKLKSLSLEHNGIS-DINGLVHLPQL---------------ESLYLGNN---- 144

Query: 675 MGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNL 734
             +   I   ++          L  +  L L  N+ I +I   +  L ++  L LS+N++
Sbjct: 145 --KITDITVLSR----------LTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHI 190

Query: 735 TGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNAL 772
           +       + L+ ++ L+L       K       L   
Sbjct: 191 SDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVP 226

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 35/213 (16%), Positives = 76/213 (35%), Gaps = 42/213 (19%)

Query: 571 SKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLS 630
              +  +  +L    +   +      L+ +  +I  N++ +    ++   L  +  L L+
Sbjct: 21  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLN 76

Query: 631 HNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSY 690
            N  +  I P  +  +L                +  +  N      + + +         
Sbjct: 77  GNKLT-DIKPLANLKNL---------------GWLFLDEN------KVKDLSSLKD---- 110

Query: 691 TYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVES 750
                 L+ +  L L  N  I +I   +  L ++ +L L  N +T       S L ++++
Sbjct: 111 ------LKKLKSLSLEHNG-ISDING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDT 160

Query: 751 LDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
           L L  N ++  I P L  L  L    ++ N++S
Sbjct: 161 LSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS 191

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  106 bits (267), Expect = 3e-24
 Identities = 54/302 (17%), Positives = 101/302 (33%), Gaps = 49/302 (16%)

Query: 358 RSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFN 417
           +  +   N       L          L ++   L   +P  +    P +  L I+ NA  
Sbjct: 38  KQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLP---PQITVLEITQNAL- 92

Query: 418 GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLT 477
            S+P       SL YLD  +N+L+  +PE  A    +L++L + NN L   +  +     
Sbjct: 93  ISLPELPA---SLEYLDACDNRLS-TLPELPA----SLKHLDVDNNQLT--MLPELP--A 140

Query: 478 KLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHL 537
            L+ +N D N  +  +PE  ++   L+ L + +N ++  +P    ++  LD      N L
Sbjct: 141 LLEYINADNNQ-LTMLPELPTS---LEVLSVRNNQLT-FLPELPESLEALDVS---TNLL 192

Query: 538 EGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRL 597
           E  +P+   +  + E                        +      NR+  +IP  +  L
Sbjct: 193 ES-LPAVPVRNHHSEET---------------------EIFFRCRENRIT-HIPENILSL 229

Query: 598 SQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLI 657
                +IL +N             Q  +        +        +       +      
Sbjct: 230 DPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWF 288

Query: 658 PT 659
           P 
Sbjct: 289 PE 290

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 89.3 bits (221), Expect = 1e-18
 Identities = 43/224 (19%), Positives = 83/224 (37%), Gaps = 43/224 (19%)

Query: 48  FQQLESLDLSGNNIAGCVENEGLEKL-SGLSNLKFLDLSHNSFNNSVLSSL-AGLSSLKN 105
             Q+  L+++ N          L  L    ++L++LD   N      LS+L    +SLK+
Sbjct: 79  PPQITVLEITQNA---------LISLPELPASLEYLDACDNR-----LSTLPELPASLKH 124

Query: 106 LSLAYNRLEGSINIEEL-DSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIR 164
           L +  N+L        L +  + LE ++  +N++  L  P+       L  L +   ++ 
Sbjct: 125 LDVDNNQL------TMLPELPALLEYINADNNQLTML--PEL---PTSLEVLSVRNNQLT 173

Query: 165 DGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQE----LYIDHNDFIGSLP 220
              ++        SL+ L + S N  +++          H +E         N  I  +P
Sbjct: 174 FLPELP------ESLEALDV-STNLLESL--PAVPVRNHHSEETEIFFRCRENR-ITHIP 223

Query: 221 WCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHF 264
             + +L     + + DN L+       L   T+         +F
Sbjct: 224 ENILSLDPTCTIILEDNPLSS-RIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.9 bits (207), Expect = 7e-17
 Identities = 70/366 (19%), Positives = 119/366 (32%), Gaps = 53/366 (14%)

Query: 29  LLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKL--SGLSNLKFLDLSH 86
               N  S  Y +   F+ + + E   L G N      NE +  L    ++    L L+ 
Sbjct: 16  NSFYNTISGTYAD--YFSAWDKWEKQALPGENR-----NEAVSLLKECLINQFSELQLNR 68

Query: 87  NSFNNSVLSSL--AGLSSLKNLSLAYNRLEGSINIEEL-DSLSNLEGLDMSDNEIDNLVV 143
            +     LSSL       +  L +  N L        L +  ++LE LD  DN +  L  
Sbjct: 69  LN-----LSSLPDNLPPQITVLEITQNAL------ISLPELPASLEYLDACDNRLSTL-- 115

Query: 144 PKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELA 203
           P+       L+ LD+   ++    +          L+ +   +N        T       
Sbjct: 116 PEL---PASLKHLDVDNNQLTMLPE------LPALLEYINADNNQL------TMLPELPT 160

Query: 204 HLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSP--LMHLTSIEL-LILS 260
            L+ L + +N  +  LP       SL  L V  N L   L + P    H    E+     
Sbjct: 161 SLEVLSVRNNQ-LTFLP---ELPESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCR 215

Query: 261 NNHF-QIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLS-DHGDSD 318
            N    IP ++    +          +N +   I  S S  T +       +     D  
Sbjct: 216 ENRITHIPENI---LSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272

Query: 319 GGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSR 378
             T+ + L       F      ++   + ++  E + N  S  L   S +   R  +  R
Sbjct: 273 QNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFR 332

Query: 379 KNIIAL 384
           + + A 
Sbjct: 333 EQVAAW 338

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 77.3 bits (190), Expect = 8e-15
 Identities = 55/336 (16%), Positives = 95/336 (28%), Gaps = 63/336 (18%)

Query: 355 TNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIG-------------- 400
                + L   +LS    LP      I  L+I+ N L   +P                  
Sbjct: 59  NQFSELQLNRLNLS---SLPDNLPPQITVLEITQNALI-SLPELPASLEYLDACDNRLST 114

Query: 401 --KVLPNLGFLTISFNAFNGSIPSSFG-----------------DMNSLIYLDLSNNQLT 441
             ++  +L  L +  N     +P                        SL  L + NNQLT
Sbjct: 115 LPELPASLKHLDVDNNQLT-MLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLT 173

Query: 442 GEIPEHLAMGCFNLEYLLLSNNSLQG--QLFSKKINLTKL-KRLNLDGNHFIGGIPESLS 498
             +PE       +LE L +S N L+    +  +  +  +         N  I  IPE++ 
Sbjct: 174 -FLPELPE----SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR-ITHIPENIL 227

Query: 499 NCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSE-----------FCQ 547
           +      + + DN +S  I   +   +       P  +       +              
Sbjct: 228 SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287

Query: 548 LDYLEILDLSK--NNIAGRPLNGAFSKCSYLL--TLDLCNNR-LNGNIPNWMGRLSQLRY 602
               +  D+S+  +          FS     L  T+   N       +  W+ +LS    
Sbjct: 288 FPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAE 347

Query: 603 LILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQI 638
           L   +     +          L   +L       Q 
Sbjct: 348 LRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQA 383

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.2 bits (187), Expect = 2e-14
 Identities = 58/407 (14%), Positives = 113/407 (27%), Gaps = 110/407 (27%)

Query: 428 NSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQL-FSKKINLTKLKRLNLDG 486
           N  +  +   N ++              E   L   +    +   K+  + +   L L+ 
Sbjct: 10  NFSLSQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNR 68

Query: 487 NHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFC 546
            + +  +P++L     +  L I+ N +  S+P    +                       
Sbjct: 69  LN-LSSLPDNL--PPQITVLEITQNALI-SLPELPAS----------------------- 101

Query: 547 QLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILA 606
                                        L  LD C+NRL+  +P      + L++L + 
Sbjct: 102 -----------------------------LEYLDACDNRLS-TLPE---LPASLKHLDVD 128

Query: 607 NNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDN-TSLHREEGYYDLIPTYRNEYD 665
           NN     +P     L+ +   +  +N  +  +P    +   L                  
Sbjct: 129 NNQLT-MLPELPALLEYI---NADNNQLT-MLPELPTSLEVLS----------------- 166

Query: 666 IVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIR-- 723
            V  N    + E                    ES+  LD+S N L   +P+         
Sbjct: 167 -VRNNQLTFLPEL------------------PESLEALDVSTNLLE-SLPAVPVRNHHSE 206

Query: 724 --IHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNN 781
                     N +T  IP    +L    ++ L  N L+ +I   L +  A   +      
Sbjct: 207 ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIY 265

Query: 782 LSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENRSSTEASTH 828
            S    ++        +      P      + +I +       A+T 
Sbjct: 266 FSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTF 312

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.4 bits (159), Expect = 5e-11
 Identities = 40/219 (18%), Positives = 78/219 (35%), Gaps = 36/219 (16%)

Query: 76  LSNLKFLDLSHNSFNNSVLSS----LAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGL 131
           L       LS NSF N++  +     +     +  +L       ++++ +   ++    L
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64

Query: 132 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAK 191
            ++   + +L  P +     ++  L+++   +      L       SL+ L    N    
Sbjct: 65  QLNRLNLSSL--PDN--LPPQITVLEITQNALIS----LPE--LPASLEYLDACDNRL-- 112

Query: 192 TVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHL 251
               +      A L+ L +D+N     LP        L  ++  +NQLT  L        
Sbjct: 113 ----STLPELPASLKHLDVDNNQLT-MLP---ELPALLEYINADNNQLTM-LPEL----P 159

Query: 252 TSIELLILSNNHF-QIPMSLEPFFNYSKLKIFHGRENQI 289
           TS+E+L + NN    +P   E       L+      N +
Sbjct: 160 TSLEVLSVRNNQLTFLPELPE------SLEALDVSTNLL 192

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  101 bits (254), Expect = 2e-23
 Identities = 56/278 (20%), Positives = 106/278 (38%), Gaps = 24/278 (8%)

Query: 370 PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPS-SFGDMN 428
           P  L       + +LD+S N++  +I     +   NL  L ++ N  N +I   SF  + 
Sbjct: 47  PSGLTE----AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLG 100

Query: 429 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ----GQLFSKKINLTKLKRLNL 484
           SL +LDLS N L+  +         +L +L L  N  +      LFS   +LTKL+ L +
Sbjct: 101 SLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS---HLTKLQILRV 156

Query: 485 DGNHFIGGIPE-SLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPS 543
                   I     +  + L+ L I  +D+    P  + +I  +  +I+        +  
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216

Query: 544 EFCQLDYLEILDLSKNNIAGRPLN-------GAFSKCSYLLTLDLCNNRLNGNIPNWMGR 596
                  +E L+L   ++     +        +  K      + + +  L   +   + +
Sbjct: 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQ 275

Query: 597 LSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNF 634
           +S L  L  + N  +        +L  L+ + L  N +
Sbjct: 276 ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 97.1 bits (242), Expect = 7e-22
 Identities = 46/246 (18%), Positives = 98/246 (39%), Gaps = 24/246 (9%)

Query: 419 SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKIN 475
           SIPS   +  ++  LDLSNN++T  I       C NL+ L+L++N   +++   FS   +
Sbjct: 45  SIPSGLTE--AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFS---S 98

Query: 476 LTKLKRLNLDGNHFIGGIPESL-SNCSSLQGLYISDNDISGSIP--TWMGNISFLDAIIM 532
           L  L+ L+L  N+ +  +  S     SSL  L +  N    ++   +   +++ L  + +
Sbjct: 99  LGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRV 156

Query: 533 PDNHLEGPIPSE-FCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP 591
            +      I  + F  L +LE L++  +++       +      +  L L   +    + 
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-PKSLKSIQNVSHLILHMKQHILLLE 215

Query: 592 NWMGRLSQLRYLILANNNFEGE--------VPLRLCQLQKLRLLDLSHNNFSGQIPPCLD 643
            ++   S +  L L + + +              L +    R + ++  +    +     
Sbjct: 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275

Query: 644 NTSLHR 649
            + L  
Sbjct: 276 ISGLLE 281

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 94.0 bits (234), Expect = 9e-21
 Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 16/229 (6%)

Query: 44  LFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNN-SVLSSLAGLSS 102
            F+    LE LDLS N ++    +        LS+L FL+L  N +      S  + L+ 
Sbjct: 95  SFSSLGSLEHLDLSYNYLSNL--SSSW--FKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150

Query: 103 LKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLR 162
           L+ L +        I  ++   L+ LE L++  +++ +   PK  + ++ +  L L   +
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-PKSLKSIQNVSHLILHMKQ 209

Query: 163 IRDGSKVLHSIGSFPSLKTLYLKSNNFAK------TVTTTQGLCELAHLQELYIDHNDFI 216
                 +   +    S++ L L+  +         +   T  L +    + + I     +
Sbjct: 210 HI--LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES-L 266

Query: 217 GSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQ 265
             +   L  ++ L  L    NQL  ++       LTS++ + L  N + 
Sbjct: 267 FQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 91.7 bits (228), Expect = 4e-20
 Identities = 54/274 (19%), Positives = 114/274 (41%), Gaps = 30/274 (10%)

Query: 355 TNLRSIILANNSLSGPFRLPT---RSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTI 411
             ++S+ L+NN ++    +     +   N+ AL ++ N +   I  +    L +L  L +
Sbjct: 52  EAVKSLDLSNNRIT---YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDL 107

Query: 412 SFNAFNGSIPSS-FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN----SLQ 466
           S+N    ++ SS F  ++SL +L+L  N         L      L+ L + N      +Q
Sbjct: 108 SYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 467 GQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWM-GNIS 525
            + F+    LT L+ L +D +      P+SL +  ++  L +        +        S
Sbjct: 167 RKDFA---GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTS 222

Query: 526 FLDAIIMPDNHLEGPIPSE--------FCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLL 577
            ++ + + D  L+    SE          +      + ++  ++    +    ++ S LL
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL--FQVMKLLNQISGLL 280

Query: 578 TLDLCNNRLNGNIPNWM-GRLSQLRYLILANNNF 610
            L+   N+L  ++P+ +  RL+ L+ + L  N +
Sbjct: 281 ELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 88.3 bits (219), Expect = 8e-19
 Identities = 75/336 (22%), Positives = 118/336 (35%), Gaps = 38/336 (11%)

Query: 37  ALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKL-SGL-SNLKFLDLSHNSFNNSVL 94
              +            SL    N I     +  L  + SGL   +K LDLS+N       
Sbjct: 11  LGVIISLSKEESSNQASLSCDRNGICKG-SSGSLNSIPSGLTEAVKSLDLSNNRITYISN 69

Query: 95  SSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLR 154
           S L    +L+ L L  N +  +I  +   SL +LE LD+S N + NL     ++ L  L 
Sbjct: 70  SDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLT 127

Query: 155 FLDLSGLRIRDGSKVLHSIGSFPSLKTLYLK--SNNFAKTVTTTQGLCELAHLQELYIDH 212
           FL+L G       K L     F  L  L +    N    T    +    L  L+EL ID 
Sbjct: 128 FLNLLGNPY----KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183

Query: 213 NDFIGSLPW-CLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLE 271
           +D + S     L ++ ++  L +   Q    L    +   +S+E L L +          
Sbjct: 184 SD-LQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLD------ 235

Query: 272 PFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHH 331
                                     +SL  KF   ++ ++   D     + K L     
Sbjct: 236 --------------TFHFSELSTGETNSLIKKFTFRNVKIT---DESLFQVMKLLNQISG 278

Query: 332 LEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSL 367
           L  +  S   ++   P  + +  T+L+ I L  N  
Sbjct: 279 LLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 6e-16
 Identities = 58/314 (18%), Positives = 109/314 (34%), Gaps = 53/314 (16%)

Query: 167 SKVLHSI--GSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPW-CL 223
           S  L+SI  G   ++K+L L +N       +   L    +LQ L +  N  I ++     
Sbjct: 40  SGSLNSIPSGLTEAVKSLDLSNNRITYISNSD--LQRCVNLQALVLTSNG-INTIEEDSF 96

Query: 224 ANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFH 283
           ++L SL  L +  N L+ NLSSS    L+S+  L L  N ++       F + +KL+I  
Sbjct: 97  SSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155

Query: 284 GRENQIFGEIESSH-SSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNM 342
                 F +I+    + LT    L  + +                             + 
Sbjct: 156 VGNMDTFTKIQRKDFAGLT---FLEELEIDA---------------------------SD 185

Query: 343 RGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIAL---DISYNKLQGHIPVEI 399
              +    L++  N+  +IL          L         ++   ++    L      E+
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHI---LLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242

Query: 400 GKV-------LPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGC 452
                           + I+  +    +      ++ L+ L+ S NQL   +P+ +    
Sbjct: 243 STGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRL 300

Query: 453 FNLEYLLLSNNSLQ 466
            +L+ + L  N   
Sbjct: 301 TSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 45/307 (14%), Positives = 93/307 (30%), Gaps = 80/307 (26%)

Query: 227 TSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEP--FFNYSKLKIFHG 284
            +++ L + +N++T  +S+S L    +++ L+L++N      ++E   F +   L+    
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLEHLDL 107

Query: 285 RENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRG 344
             N                  L+++                                   
Sbjct: 108 SYNY-----------------LSNL----------------------------------- 115

Query: 345 EFPSWLLENNTNLRSIILANNSLS-----GPFRLPTRSRKNIIALDISYNKLQGHIPVEI 399
              S   +  ++L  + L  N          F   T     +  L +        I  + 
Sbjct: 116 --SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT----KLQILRVGNMDTFTKIQRKD 169

Query: 400 GKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLL 459
              L  L  L I  +      P S   + ++ +L L   Q    + E       ++E L 
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLE 228

Query: 460 LSNNSLQGQ--------LFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDN 511
           L +  L             +  I     + + +     +  + + L+  S L  L  S N
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES-LFQVMKLLNQISGLLELEFSRN 287

Query: 512 DISGSIP 518
            +  S+P
Sbjct: 288 QLK-SVP 293

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.1 bits (164), Expect = 7e-12
 Identities = 54/322 (16%), Positives = 102/322 (31%), Gaps = 76/322 (23%)

Query: 477 TKLKRLNLDGNHFIGGIPES-LSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDN 535
             +K L+L  N  I  I  S L  C +LQ L ++ N I+ +I                  
Sbjct: 52  EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGIN-TIE----------------- 92

Query: 536 HLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPN-WM 594
                    F  L  LE LDLS N ++    +  F   S L  L+L  N           
Sbjct: 93  ------EDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTFLNLLGNPYKTLGETSLF 145

Query: 595 GRLSQLRYLILANNNFEGEVPLR-LCQLQKLRLLDLSHNNFSGQIPPCLDN----TSLHR 649
             L++L+ L + N +   ++  +    L  L  L++  ++     P  L +    + L  
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205

Query: 650 EEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNK 709
                     +  ++ ++                               S+  L+L    
Sbjct: 206 ----------HMKQHILLLEIFV----------------------DVTSSVECLELRDTD 233

Query: 710 LIGEIPSRI--------GELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGK 761
           L     S +         +      + ++  +L   +    + +  +  L+ S N L   
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS- 291

Query: 762 IPPRLVE-LNALAVFTVAHNNL 782
           +P  + + L +L    +  N  
Sbjct: 292 VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.7 bits (124), Expect = 6e-07
 Identities = 48/274 (17%), Positives = 80/274 (29%), Gaps = 67/274 (24%)

Query: 551 LEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNF 610
           ++ LDLS N I     N    +C  L  L L +N +N                 +  ++F
Sbjct: 54  VKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNGIN----------------TIEEDSF 96

Query: 611 EGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCL--DNTSLHREEGYYDLIPTYRNEYDIVS 668
                     L  L  LDLS+N  S  +        +SL     + +L     N Y  + 
Sbjct: 97  SS--------LGSLEHLDLSYNYLS-NLSSSWFKPLSSLT----FLNL---LGNPYKTLG 140

Query: 669 YNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRI-GELIRIHTL 727
                     ET  F             L  +  L +       +I  +    L  +  L
Sbjct: 141 ----------ETSLF-----------SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179

Query: 728 NLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPP---------RLVELNALAVFTVA 778
            +  ++L    P +  +++ V  L L        +             +EL    + T  
Sbjct: 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFH 238

Query: 779 HNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPL 812
            + LS      + +  TF               L
Sbjct: 239 FSELSTGETNSLIKKFTFRNVKITDESLFQVMKL 272

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 99.2 bits (247), Expect = 7e-23
 Identities = 50/246 (20%), Positives = 83/246 (33%), Gaps = 17/246 (6%)

Query: 403 LPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF-NLEYLLLS 461
           L  L        +           ++ L  L L N ++TG  P  L      +L  L L 
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129

Query: 462 NNSLQGQLFS----KKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSI 517
           N S   +       ++     LK L++   H +    E +    +L  L +SDN   G  
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 518 PTW----MGNISFLDAIIMPDNHLE---GPIPSEFCQLDYLEILDLSKNNIAGRPLNGAF 570
                        L  + + +  +E   G   +       L+ LDLS N++       + 
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 571 SKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLS 630
              S L +L+L    L           ++L  L L+ N  +   P    +L ++  L L 
Sbjct: 250 DWPSQLNSLNLSFTGLKQVPKGL---PAKLSVLDLSYNRLD-RNPSPD-ELPQVGNLSLK 304

Query: 631 HNNFSG 636
            N F  
Sbjct: 305 GNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.8 bits (207), Expect = 1e-17
 Identities = 51/277 (18%), Positives = 80/277 (28%), Gaps = 22/277 (7%)

Query: 253 SIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLS 312
           S+E L+   +                LK    R  +I   I      +     L  ++L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 313 DHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLE----NNTNLRSIILANNSLS 368
           +   +     P        L  + + +V+      +WL E        L+ + +A     
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 369 GPFRLPTRSRKNIIALDISYNKLQGHIPVE---IGKVLPNLGFLTISFNAFN---GSIPS 422
                  R    +  LD+S N   G   +         P L  L +         G   +
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 423 SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ---GQLFSKKINLTKL 479
                  L  LDLS+N L              L  L LS   L+     L +      KL
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA------KL 276

Query: 480 KRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGS 516
             L+L  N  +   P S      +  L +  N    S
Sbjct: 277 SVLDLSYNR-LDRNP-SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 80.3 bits (198), Expect = 2e-16
 Identities = 42/163 (25%), Positives = 58/163 (35%), Gaps = 11/163 (6%)

Query: 30  LSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSF 89
           LS+  A +L  +      F  L +LDLS N   G               L+ L L +   
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 90  N---NSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKD 146
                   +  A    L+ L L++N L  +      D  S L  L++S   +    VPK 
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VPKG 271

Query: 147 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 189
                KL  LDLS  R+             P +  L LK N F
Sbjct: 272 L--PAKLSVLDLSYNRLDRNPSPDE----LPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.9 bits (189), Expect = 3e-15
 Identities = 62/358 (17%), Positives = 98/358 (27%), Gaps = 82/358 (22%)

Query: 436 SNNQLTGEIPEHLAMGCFNLEYLLLS-NNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIP 494
           S     G     L  G  +LEYLL   +       F+  I    LKRL +        I 
Sbjct: 26  SAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRIL 85

Query: 495 ESLS---NCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYL 551
                    S LQ L + + +++G+ P  +   +                      L+ L
Sbjct: 86  FGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP-------------------DLNIL 126

Query: 552 EILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE 611
            + ++S                  L  L +            +     L  L L++N   
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186

Query: 612 GEVPLR----LCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIV 667
           GE  L       +   L++L L +         C    +                     
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA-------------------- 226

Query: 668 SYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGE-LIRIHT 726
                                           + GLDLS N L     +   +   ++++
Sbjct: 227 -----------------------------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 727 LNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSG 784
           LNLS   L        + L     LDLSYN L     P   EL  +   ++  N    
Sbjct: 258 LNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.2 bits (177), Expect = 8e-14
 Identities = 40/225 (17%), Positives = 69/225 (30%), Gaps = 14/225 (6%)

Query: 22  SRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKF 81
           S +  + L +L +           T    L  L+L   + A         +      LK 
Sbjct: 95  SGLQELTLENLEVTGTAPPPLLEAT-GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 82  LDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEE---LDSLSNLEGLDMSDNEI 138
           L ++     N     +    +L  L L+ N   G   +           L+ L + +  +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 139 DNL--VVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTT 196
           +    V         +L+ LDLS   +RD +           L +L L      K V   
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP-SQLNSLNLSFTGL-KQVPK- 270

Query: 197 QGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTE 241
                 A L  L + +N  +   P     L  +  L +  N   +
Sbjct: 271 ---GLPAKLSVLDLSYNR-LDRNPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.5 bits (175), Expect = 1e-13
 Identities = 42/225 (18%), Positives = 73/225 (32%), Gaps = 11/225 (4%)

Query: 50  QLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLA 109
            LE L    +  A   +   + K   L  L        S        + G+S L+ L+L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 110 YNRLEGSINIEELD-SLSNLEGLDMSDNEI---DNLVVPKDYRGLRKLRFLDLSGLRIRD 165
              + G+     L+ +  +L  L++ +      D  +          L+ L ++     +
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 166 GSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCE--LAHLQELYIDHNDF---IGSLP 220
            S     +  FP+L TL L  N           LC      LQ L + +       G   
Sbjct: 164 FS--CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221

Query: 221 WCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQ 265
              A    L+ L +  N L +   +      + +  L LS    +
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 54/310 (17%), Positives = 100/310 (32%), Gaps = 41/310 (13%)

Query: 115 GSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRD-GSKVLHSI 173
           G+ ++E      +LE L    +   +L    D      L+ L +   RI          +
Sbjct: 32  GAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRV 91

Query: 174 GSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHN------DFIGSLPWCLANLT 227
                L+ L L++     T            L  L + +        ++  L   L    
Sbjct: 92  LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL--KP 149

Query: 228 SLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGREN 287
            L+VL +       N S   +    ++  L LS+N       L       K         
Sbjct: 150 GLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP------- 201

Query: 288 QIFGEIESSHSSLTPKFQLTSISLSD-HGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEF 346
                             L  ++L +   ++  G        +  L+ + +S  ++R   
Sbjct: 202 -----------------TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244

Query: 347 PSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNL 406
            +   +  + L S+ L+   L    ++P      +  LD+SYN+L    P      LP +
Sbjct: 245 GAPSCDWPSQLNSLNLSFTGLK---QVPKGLPAKLSVLDLSYNRLD-RNPSPDE--LPQV 298

Query: 407 GFLTISFNAF 416
           G L++  N F
Sbjct: 299 GNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 9/123 (7%)

Query: 16  LCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSG 75
           LC      +  + L +  + +   +  +L     QL+ LDLS N++              
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS---CDW 251

Query: 76  LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSD 135
            S L  L+LS       V   L   + L  L L+YNRL+        D L  +  L +  
Sbjct: 252 PSQLNSLNLSFTGL-KQVPKGL--PAKLSVLDLSYNRLDR---NPSPDELPQVGNLSLKG 305

Query: 136 NEI 138
           N  
Sbjct: 306 NPF 308

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.1 bits (245), Expect = 1e-22
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 22/244 (9%)

Query: 51  LESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAY 110
            + + L GN I+               NL  L L  N       ++  GL+ L+ L L+ 
Sbjct: 34  SQRIFLHGNRISHVPAAS----FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 111 NRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKD-YRGLRKLRFLDLSGLRIRDGSKV 169
           N    S++      L  L  L +    +  L      +RGL  L++L L    ++     
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQEL--GPGLFRGLAALQYLYLQDNALQ----A 143

Query: 170 LHSIGSF---PSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP-WCLAN 225
           L    +F    +L  L+L  N    +    +    L  L  L +  N  +  +      +
Sbjct: 144 LPD-DTFRDLGNLTHLFLHGNRI--SSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRD 199

Query: 226 LTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGR 285
           L  L  L++  N L+  L +  L  L +++ L L++N +       P +    L+ F G 
Sbjct: 200 LGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA--WLQKFRGS 256

Query: 286 ENQI 289
            +++
Sbjct: 257 SSEV 260

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 97.8 bits (244), Expect = 1e-22
 Identities = 59/262 (22%), Positives = 92/262 (35%), Gaps = 39/262 (14%)

Query: 354 NTNLRSIILANNSLSG-PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTIS 412
           N    +       L   P  +P         + +  N++  H+P    +   NL  L + 
Sbjct: 10  NEPKVTTSCPQQGLQAVPVGIPA----ASQRIFLHGNRIS-HVPAASFRACRNLTILWLH 64

Query: 413 FNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQL 469
            N       ++F  +  L  LDLS+N     +      G   L  L L       L   L
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 470 FSKKINLTKLKRLNLDGNHFIGGIPE-SLSNCSSLQGLYISDNDISGSIPTWMGNISFLD 528
           F     L  L+ L L  N  +  +P+ +  +  +L  L++  N IS S+P          
Sbjct: 125 FR---GLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS-SVPERA------- 172

Query: 529 AIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNG 588
                           F  L  L+ L L +N +A      AF     L+TL L  N L+ 
Sbjct: 173 ----------------FRGLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSA 215

Query: 589 NIPNWMGRLSQLRYLILANNNF 610
                +  L  L+YL L +N +
Sbjct: 216 LPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.1 bits (224), Expect = 6e-20
 Identities = 48/190 (25%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 77  SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDN 136
           +  + + L  N  ++   +S     +L  L L  N L   I+      L+ LE LD+SDN
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90

Query: 137 EIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTLYLKSNNFAKTV 193
                V P  + GL +L  L L    +++    L   G F    +L+ LYL+ N      
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQE----LGP-GLFRGLAALQYLYLQDNAL--QA 143

Query: 194 TTTQGLCELAHLQELYIDHNDFIGSLPW-CLANLTSLRVLHVPDNQLTENLSSSPLMHLT 252
                  +L +L  L++  N  I S+P      L SL  L +  N++   +       L 
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLG 201

Query: 253 SIELLILSNN 262
            +  L L  N
Sbjct: 202 RLMTLYLFAN 211

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 55/190 (28%), Positives = 76/190 (40%), Gaps = 22/190 (11%)

Query: 45  FTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLK 104
           FT    LE LDLS N     V+        GL  L  L L              GL++L+
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPAT---FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 105 NLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIR 164
            L L  N L+ ++  +    L NL  L +  N I ++   + +RGL  L  L L   R+ 
Sbjct: 133 YLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNRVA 190

Query: 165 DGSKVLHSIGSF---PSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPW 221
                +H   +F     L TLYL +NN   +   T+ L  L  LQ L ++ N      PW
Sbjct: 191 ----HVHP-HAFRDLGRLMTLYLFANNL--SALPTEALAPLRALQYLRLNDN------PW 237

Query: 222 -CLANLTSLR 230
            C      L 
Sbjct: 238 VCDCRARPLW 247

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 42/269 (15%), Positives = 84/269 (31%), Gaps = 73/269 (27%)

Query: 227 TSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEP--FFNYSKLKIFHG 284
            + + + +  N+++ ++ ++      ++ +L L +N       ++   F   + L+    
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA---RIDAAAFTGLALLEQLDL 87

Query: 285 RENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRG 344
            +N                 QL S+                                   
Sbjct: 88  SDNA----------------QLRSV----------------------------------- 96

Query: 345 EFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIAL---DISYNKLQGHIPVEIGK 401
                       L ++ L    L     L     + + AL    +  N LQ  +P +  +
Sbjct: 97  --DPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 402 VLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS 461
            L NL  L +  N  +     +F  ++SL  L L  N++   +  H       L  L L 
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLF 209

Query: 462 NN---SLQGQLFSKKINLTKLKRLNLDGN 487
            N   +L  +  +    L  L+ L L+ N
Sbjct: 210 ANNLSALPTEALA---PLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.9 bits (169), Expect = 9e-13
 Identities = 53/237 (22%), Positives = 82/237 (34%), Gaps = 38/237 (16%)

Query: 551 LEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNF 610
            + + L  N I+  P   +F  C  L  L L +N L          L+ L  L L++N  
Sbjct: 34  SQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 611 EGEVPLR-LCQLQKLRLLDLSHNNFSGQIPPCL--DNTSLHREEGYYDLIPTYRNEYDIV 667
              V       L +L  L L       ++ P L     +L     Y  L     N    +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQ----YLYL---QDNALQAL 144

Query: 668 SYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRI-GELIRIHT 726
             +            F           + L ++  L L  N+ I  +P R    L  +  
Sbjct: 145 PDDT-----------F-----------RDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDR 181

Query: 727 LNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPR-LVELNALAVFTVAHNNL 782
           L L +N +    P  F +L ++ +L L  NNL+  +P   L  L AL    +  N  
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.9 bits (164), Expect = 4e-12
 Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 8/118 (6%)

Query: 44  LFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSL 103
           LF     L+ L L  N +      +       L NL  L L  N  ++    +  GL SL
Sbjct: 124 LFRGLAALQYLYLQDNALQ--ALPDDT--FRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179

Query: 104 KNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKD-YRGLRKLRFLDLSG 160
             L L  NR+   ++      L  L  L +  N +  L  P +    LR L++L L+ 
Sbjct: 180 DRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSAL--PTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 38/294 (12%), Positives = 78/294 (26%), Gaps = 89/294 (30%)

Query: 176 FPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPW-CLANLTSLRVLHV 234
             + + ++L  N    +           +L  L++  N  +  +       L  L  L +
Sbjct: 31  PAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDL 87

Query: 235 PDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEP--FFNYSKLKIFHGRENQIFGE 292
            DN    ++  +    L  +  L L     Q    L P  F   + L+  + ++N +   
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQYLYLQDNAL--- 141

Query: 293 IESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLE 352
                          ++                     +L  + +   N     P     
Sbjct: 142 --------------QALP------------DDTFRDLGNLTHLFLHG-NRISSVPERAFR 174

Query: 353 NNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTIS 412
              +L  ++L  N ++                                          + 
Sbjct: 175 GLHSLDRLLLHQNRVA-----------------------------------------HVH 193

Query: 413 FNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ 466
            +AF          +  L+ L L  N L+  +P         L+YL L++N   
Sbjct: 194 PHAFRD--------LGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 39  YLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLA 98
            L    F     L  L L GN I+   E        GL +L  L L  N   +    +  
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERA----FRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 99  GLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDN 136
            L  L  L L  N L  ++  E L  L  L+ L ++DN
Sbjct: 199 DLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 695 QPLESIHGLDLSCNKLIGEIPSRI-GELIRIHTLNLSRNNLTGTIPV-TFSNLRQVESLD 752
             L  +  LDLS N  +  +       L R+HTL+L R  L   +    F  L  ++ L 
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLY 135

Query: 753 LSYNNLTGKIPPR-LVELNALAVFTVAHNNLS 783
           L  N L   +P     +L  L    +  N +S
Sbjct: 136 LQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 695 QPLESIHGLDLSCNKLIGEIPSRI-GELIRIHTLNLSRNNLTGTIPV-TFSNLRQVESLD 752
             L  +H L L     + E+   +   L  +  L L  N L   +P  TF +L  +  L 
Sbjct: 102 HGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLF 159

Query: 753 LSYNNLTGKIPPR-LVELNALAVFTVAHNNLS 783
           L  N ++  +P R    L++L    +  N ++
Sbjct: 160 LHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 699 SIHGLDLSCNKLIGEIPSRI-GELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNN 757
           +   + L  N+ I  +P+        +  L L  N L       F+ L  +E LDLS N 
Sbjct: 33  ASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 758 LTGKIPPR-LVELNALAVFTVAHNNLSGKIPERI 790
               + P     L  L    +    L  ++   +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGL 124

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 92.8 bits (231), Expect = 5e-21
 Identities = 48/212 (22%), Positives = 92/212 (43%), Gaps = 26/212 (12%)

Query: 70  LEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLE 129
           +    GL+N    +L   S  +  L S   LS ++N +   + ++   ++  +   +NL+
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLK 66

Query: 130 GLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 189
            L +S N+I +L      + L KL  L ++  R+++ + +         L  L+L +N  
Sbjct: 67  ELHLSHNQISDL---SPLKDLTKLEELSVNRNRLKNLNGI-----PSACLSRLFLDNNE- 117

Query: 190 AKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLM 249
              +  T  L  L +L+ L I +N  + S+   L  L+ L VL +  N++T   ++  L 
Sbjct: 118 ---LRDTDSLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEIT---NTGGLT 169

Query: 250 HLTSIELLILSNNHFQIPMSLEPFFNYSKLKI 281
            L  +  + L+          EP     +L I
Sbjct: 170 RLKKVNWIDLTGQ----KCVNEPVKYQPELYI 197

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 92.8 bits (231), Expect = 5e-21
 Identities = 39/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 48  FQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLS 107
                  +L   ++        L     LS ++  +  +++  +  L+ +   ++LK L 
Sbjct: 18  LANAVKQNLGKQSV------TDLVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 108 LAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGS 167
           L++N++    ++  L  L+ LE L ++ N + NL           L  L L    +RD  
Sbjct: 70  LSHNQIS---DLSPLKDLTKLEELSVNRNRLKNLNGIP----SACLSRLFLDNNELRD-- 120

Query: 168 KVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLT 227
               S+    +L+ L +++N     + +   L  L+ L+ L +  N+ I +    L  L 
Sbjct: 121 --TDSLIHLKNLEILSIRNNK----LKSIVMLGFLSKLEVLDLHGNE-ITNTG-GLTRLK 172

Query: 228 SLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKI 281
            +  + +   +   N        L     +   +  +  P  +    +Y    +
Sbjct: 173 KVNWIDLTGQKCV-NEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCV 225

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 86.6 bits (215), Expect = 7e-19
 Identities = 46/218 (21%), Positives = 82/218 (37%), Gaps = 23/218 (10%)

Query: 29  LLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNS 88
            +  N+      +         +++ +   +NI      + L  +   +NLK L LSHN 
Sbjct: 21  AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNI------QSLAGMQFFTNLKELHLSHN- 73

Query: 89  FNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYR 148
              S LS L  L+ L+ LS+  NRL+   N+  + S   L  L + +NE+ +        
Sbjct: 74  -QISDLSPLKDLTKLEELSVNRNRLK---NLNGIPSA-CLSRLFLDNNELRDT---DSLI 125

Query: 149 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQEL 208
            L+ L  L +   +++     +  +G    L+ L L  N     +T T GL  L  +  +
Sbjct: 126 HLKNLEILSIRNNKLKS----IVMLGFLSKLEVLDLHGNE----ITNTGGLTRLKKVNWI 177

Query: 209 YIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSS 246
            +     +         L     +  PD +       S
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 81.2 bits (201), Expect = 5e-17
 Identities = 39/208 (18%), Positives = 77/208 (37%), Gaps = 23/208 (11%)

Query: 94  LSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKL 153
           +    GL++    +L    +    ++     LS ++  +  ++ I +L      +    L
Sbjct: 12  VFPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQSL---AGMQFFTNL 65

Query: 154 RFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHN 213
           + L LS  +I D    L  +     L+ L +  N     +    G+   A L  L++D+N
Sbjct: 66  KELHLSHNQISD----LSPLKDLTKLEELSVNRNR----LKNLNGI-PSACLSRLFLDNN 116

Query: 214 DFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPF 273
           + +      L +L +L +L + +N+L    S   L  L+ +E+L L  N      +    
Sbjct: 117 E-LRDTD-SLIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEIT---NTGGL 168

Query: 274 FNYSKLKIFHGRENQIFGEIESSHSSLT 301
               K+        +   E       L 
Sbjct: 169 TRLKKVNWIDLTGQKCVNEPVKYQPELY 196

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.4 bits (178), Expect = 4e-14
 Identities = 42/196 (21%), Positives = 86/196 (43%), Gaps = 25/196 (12%)

Query: 118 NIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFP 177
            +     L+N    ++    + +LV  K+   L  ++  +     I+     L  +  F 
Sbjct: 11  QVFPDPGLANAVKQNLGKQSVTDLVSQKE---LSGVQNFNGDNSNIQS----LAGMQFFT 63

Query: 178 SLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDN 237
           +LK L+L  N     ++    L +L  L+EL ++ N  + +L   + +   L  L + +N
Sbjct: 64  NLKELHLSHNQ----ISDLSPLKDLTKLEELSVNRNR-LKNLN-GIPSAC-LSRLFLDNN 116

Query: 238 QLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSH 297
           +L +      L+HL ++E+L + NN  ++  S+      SKL++     N+I     ++ 
Sbjct: 117 ELRDT---DSLIHLKNLEILSIRNN--KL-KSIVMLGFLSKLEVLDLHGNEI-----TNT 165

Query: 298 SSLTPKFQLTSISLSD 313
             LT   ++  I L+ 
Sbjct: 166 GGLTRLKKVNWIDLTG 181

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 37/212 (17%), Positives = 74/212 (34%), Gaps = 49/212 (23%)

Query: 426 DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKI----NLTKLKR 481
            + + +  +L    +T  + +        ++     N+++      + +      T LK 
Sbjct: 17  GLANAVKQNLGKQSVTDLVSQK---ELSGVQNFNGDNSNI------QSLAGMQFFTNLKE 67

Query: 482 LNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPI 541
           L+L  N  I  +   L + + L+ L ++ N +         N++ +              
Sbjct: 68  LHLSHNQ-ISDL-SPLKDLTKLEELSVNRNRLK--------NLNGIP------------- 104

Query: 542 PSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLR 601
                    L  L L  N +       +      L  L + NN+L  +I   +G LS+L 
Sbjct: 105 ------SACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLE 153

Query: 602 YLILANNNFEGEVPLRLCQLQKLRLLDLSHNN 633
            L L  N       L   +L+K+  +DL+   
Sbjct: 154 VLDLHGNEITNTGGLT--RLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 44/259 (16%), Positives = 79/259 (30%), Gaps = 66/259 (25%)

Query: 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLT 410
                N     L   S++       +    +   +   + +         + L  + F T
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQ--KELSGVQNFNGDNSNI---------QSLAGMQFFT 63

Query: 411 ISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLF 470
                             +L  L LS+NQ++ ++   L      LE L ++ N L+    
Sbjct: 64  ------------------NLKELHLSHNQIS-DL-SPLK-DLTKLEELSVNRNRLKN--- 99

Query: 471 SKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAI 530
              I    L RL LD N  +    +SL +  +L+ L I +N +         +I  L   
Sbjct: 100 LNGIPSACLSRLFLDNNE-LRDT-DSLIHLKNLEILSIRNNKLK--------SIVMLG-- 147

Query: 531 IMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNI 590
                            L  LE+LDL  N I         ++   +  +DL   +     
Sbjct: 148 ----------------FLSKLEVLDLHGNEITNTG---GLTRLKKVNWIDLTGQKCVNEP 188

Query: 591 PNWMGRLSQLRYLILANNN 609
             +   L     +   +  
Sbjct: 189 VKYQPELYITNTVKDPDGR 207

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 40/242 (16%), Positives = 84/242 (34%), Gaps = 52/242 (21%)

Query: 403 LPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSN 462
           L N     +     + +   S  +++ +   +  N+ +   +   +     NL+ L LS+
Sbjct: 18  LANAVKQNLGKQ--SVTDLVSQKELSGVQNFNGDNSNIQ-SL-AGMQ-FFTNLKELHLSH 72

Query: 463 NSLQGQLFSKKI----NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIP 518
           N +        +    +LTKL+ L+++ N  +  +   + +   L  L++ +N++     
Sbjct: 73  NQI------SDLSPLKDLTKLEELSVNRNR-LKNL-NGIPSA-CLSRLFLDNNELR---- 119

Query: 519 TWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLT 578
               +   L                    L  LEIL +  N +            S L  
Sbjct: 120 ----DTDSLI------------------HLKNLEILSIRNNKLKSIV---MLGFLSKLEV 154

Query: 579 LDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQI 638
           LDL  N +  N    + RL ++ ++ L        V   +    +L + +   +     I
Sbjct: 155 LDLHGNEIT-NTGG-LTRLKKVNWIDLTGQKC---VNEPVKYQPELYITNTVKDPDGRWI 209

Query: 639 PP 640
            P
Sbjct: 210 SP 211

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 37/204 (18%), Positives = 77/204 (37%), Gaps = 16/204 (7%)

Query: 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLT 410
            +  + +++    N+++     +  +   N+  L +S+N++    P++    L  L  L+
Sbjct: 37  QKELSGVQNFNGDNSNIQSLAGM--QFFTNLKELHLSHNQISDLSPLK---DLTKLEELS 91

Query: 411 ISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLF 470
           ++ N    ++  +      L  L L NN+L     + L     NLE L + NN L+    
Sbjct: 92  VNRNRLK-NL--NGIPSACLSRLFLDNNELRD--TDSLI-HLKNLEILSIRNNKLKS--I 143

Query: 471 SKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAI 530
                L+KL+ L+L GN  I      L+    +  + ++          +   +   + +
Sbjct: 144 VMLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

Query: 531 IMPDNHLEGPIP-SEFCQLDYLEI 553
             PD     P   S         +
Sbjct: 202 KDPDGRWISPYYISNGGSYVDGCV 225

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 15/174 (8%)

Query: 475 NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPD 534
            L    + NL     +  +  S    S +Q     +++I  S+   M   + L  + +  
Sbjct: 17  GLANAVKQNLGKQS-VTDL-VSQKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSH 72

Query: 535 NHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWM 594
           N +    P     L  LE L +++N +     N      + L  L L NN L  +  + +
Sbjct: 73  NQISDLSP--LKDLTKLEELSVNRNRLK----NLNGIPSACLSRLFLDNNELR-DTDS-L 124

Query: 595 GRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLH 648
             L  L  L + NN  +  V L    L KL +LDL  N  +           ++
Sbjct: 125 IHLKNLEILSIRNNKLKSIVMLG--FLSKLEVLDLHGNEIT-NTGGLTRLKKVN 175

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 39/226 (17%), Positives = 76/226 (33%), Gaps = 44/226 (19%)

Query: 547 QLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILA 606
            L      +L K ++       +  + S +   +  N+ +  ++   M   + L+ L L+
Sbjct: 17  GLANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLS 71

Query: 607 NNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDI 666
           +N      PL    L KL  L ++ N     +   + +  L                   
Sbjct: 72  HNQISDLSPL--KDLTKLEELSVNRNRLK-NLNG-IPSACL---------------SRLF 112

Query: 667 VSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHT 726
           +  N      E    D              L+++  L +  NK +  I   +G L ++  
Sbjct: 113 LDNN------ELRDTDSLIH----------LKNLEILSIRNNK-LKSIVM-LGFLSKLEV 154

Query: 727 LNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNAL 772
           L+L  N +T T     + L++V  +DL+      +      EL   
Sbjct: 155 LDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 93.5 bits (233), Expect = 4e-20
 Identities = 84/522 (16%), Positives = 166/522 (31%), Gaps = 122/522 (23%)

Query: 77  SNLKFLDLSHNSFNNSVLSSLA-GLSSLKNLSLAYNRL--EGSINI-EELDSLSNLEGLD 132
            +++ LD+     +++  + L   L   + + L    L      +I   L     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 133 MSDNEIDNLVVPKDYRGLR----KLRFLDLSGLRIRD-GSKVL-HSIGSFPSLKTLYLKS 186
           +  NE+ ++ V    +GL+    K++ L L    +   G  VL  ++ + P+L+ L+L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 187 NNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTE----N 242
           N          GL  L                    L     L  L +    L+      
Sbjct: 123 NLL-----GDAGLQLLCEGL----------------LDPQCRLEKLQLEYCSLSAASCEP 161

Query: 243 LSSSPLMHLTSIELLILSNNHFQ------IPMSLEPFFNYSKLKIFHGRENQIFGE-IES 295
           L+S  L      + L +SNN         +   L+   +  +L+        +  +    
Sbjct: 162 LASV-LRAKPDFKELTVSNNDINEAGVRVLCQGLK--DSPCQLEALKLESCGVTSDNCRD 218

Query: 296 SHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNT 355
               +  K  L  ++L  +   D G                +            LL  ++
Sbjct: 219 LCGIVASKASLRELALGSNKLGDVG-------------MAELCPG---------LLHPSS 256

Query: 356 NLRSIILANNSLS--GPFRLPT--RSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTI 411
            LR++ +    ++  G   L    R+++++  L ++ N+L       + + L   G    
Sbjct: 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPG---- 312

Query: 412 SFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLA---MGCFNLEYLLLSNNSLQG- 467
                             L  L + +   T     H +        L  L +SNN L+  
Sbjct: 313 ----------------CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356

Query: 468 --QLFSK--KINLTKLKRLNLDGNHF----IGGIPESLSNCSSLQGLYISDNDISGSIPT 519
             +   +      + L+ L L            +  +L    SL+ L +S+N +  +   
Sbjct: 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA--- 413

Query: 520 WMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 561
             G +  ++++  P                 LE L L     
Sbjct: 414 --GILQLVESVRQPGCL--------------LEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 85.8 bits (213), Expect = 1e-17
 Identities = 82/505 (16%), Positives = 153/505 (30%), Gaps = 98/505 (19%)

Query: 49  QQLESLDLSGNNIAGCVENEGLEKL-SGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLS 107
             ++SLD+    +     +    +L   L   + + L       +    ++         
Sbjct: 3   LDIQSLDIQCEEL----SDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS--------- 49

Query: 108 LAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLR----KLRFLDLSGLRI 163
                         L     L  L++  NE+ ++ V    +GL+    K++ L L    +
Sbjct: 50  ------------SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 97

Query: 164 RD-GSKVL-HSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPW 221
              G  VL  ++ + P+L+ L+L  N          GL  L                   
Sbjct: 98  TGAGCGVLSSTLRTLPTLQELHLSDNLL-----GDAGLQLLCEGL--------------- 137

Query: 222 CLANLTSLRVLHVPDNQLTE----NLSSSPLMHLTSIELLILSNNHFQ------IPMSLE 271
            L     L  L +    L+      L+S  L      + L +SNN         +   L+
Sbjct: 138 -LDPQCRLEKLQLEYCSLSAASCEPLASV-LRAKPDFKELTVSNNDINEAGVRVLCQGLK 195

Query: 272 PFFNYSKLKIFHGRENQIFGE-IESSHSSLTPKFQLTSISLSDHGDSDGGTI---PKFLY 327
              +  +L+        +  +        +  K  L  ++L  +   D G     P  L+
Sbjct: 196 --DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH 253

Query: 328 HQHHLEFVIISDVNMRGEFPSWL---LENNTNLRSIILANNSLSGP-----FRLPTRSRK 379
               L  + I +  +  +    L   L    +L+ + LA N L                 
Sbjct: 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 313

Query: 380 NIIALDISYNKLQGHIPVEIGKVL---PNLGFLTISFNAFNGSIPSSFGDM-----NSLI 431
            + +L +               VL     L  L IS N    +             + L 
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373

Query: 432 YLDLSNNQLTGEIPEHLA---MGCFNLEYLLLSNNSLQ---GQLFSK--KINLTKLKRLN 483
            L L++  ++      LA   +   +L  L LSNN L         +  +     L++L 
Sbjct: 374 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 433

Query: 484 LDGNHF----IGGIPESLSNCSSLQ 504
           L   ++       +     +  SL+
Sbjct: 434 LYDIYWSEEMEDRLQALEKDKPSLR 458

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 84.2 bits (209), Expect = 3e-17
 Identities = 82/475 (17%), Positives = 147/475 (30%), Gaps = 89/475 (18%)

Query: 43  SLFTPFQQLESLDLSGNNI--AGCVENEGL-EKLSGLSNLKFLDLSHNSFNNSVLSSLA- 98
            L    QQ + + L    +  A C   + +   L     L  L+L  N   +  +  +  
Sbjct: 22  ELLPLLQQCQVVRLDDCGLTEARC---KDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78

Query: 99  GLSS----LKNLSLAYNRL--EGSINI-EELDSLSNLEGLDMSDNEIDNLVVPKDYRGLR 151
           GL +    ++ LSL    L   G   +   L +L  L+ L +SDN + +  +     GL 
Sbjct: 79  GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138

Query: 152 ----KLRFLDLSGLRIRD-GSKVL-HSIGSFPSLKTLYLKSNNFAKTVTTTQGLCEL--- 202
               +L  L L    +     + L   + + P  K L + +N+        + LC+    
Sbjct: 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI--NEAGVRVLCQGLKD 196

Query: 203 --AHLQELYIDHNDF----IGSLPWCLANLTSLRVLHVPDNQLT----ENLSSSPLMHLT 252
               L+ L ++           L   +A+  SLR L +  N+L       L    L   +
Sbjct: 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS 256

Query: 253 SIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSH--SSLTPKFQLTSIS 310
            +  L +                                          L  K  L  +S
Sbjct: 257 RLRTLWIWECG--------------------------ITAKGCGDLCRVLRAKESLKELS 290

Query: 311 LSDH--GDSDGGTIPKFLYHQH-HLEFVIISDVNMRGEFPSWL---LENNTNLRSIILAN 364
           L+ +  GD     + + L      LE + +   +      S     L  N  L  + ++N
Sbjct: 291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350

Query: 365 NSLSGP-----FRLPTRSRKNIIALDISYNKLQGHIPVEIGKVL---PNLGFLTISFNAF 416
           N L         +   +    +  L ++   +       +   L    +L  L +S N  
Sbjct: 351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

Query: 417 NGS----IPSSFGDMNS-LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ 466
             +    +  S       L  L L +   + E           L+ L     SL+
Sbjct: 411 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEE-------MEDRLQALEKDKPSLR 458

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 80.4 bits (199), Expect = 6e-16
 Identities = 82/473 (17%), Positives = 146/473 (30%), Gaps = 108/473 (22%)

Query: 205 LQELYIDHNDFI-GSLPWCLANLTSLRVLHVPDNQLT----ENLSSSPLMHLTSIELLIL 259
           +Q L I   +         L  L   +V+ + D  LT    +++SS+ L    ++  L L
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNL 63

Query: 260 SNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDG 319
            +N     + +                  +   +++    +  K  L +  L+  G    
Sbjct: 64  RSNELG-DVGVH----------------CVLQGLQTPSCKIQ-KLSLQNCCLTGAGCGV- 104

Query: 320 GTIPKFLYHQHHLEFVIISDVNMRGE----FPSWLLENNTNLRSIILANNSLS----GPF 371
             +   L     L+ + +SD  +           LL+    L  + L   SLS     P 
Sbjct: 105 --LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162

Query: 372 RLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLI 431
               R++ +   L +S N +       + + L +                        L 
Sbjct: 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS--------------------PCQLE 202

Query: 432 YLDLSNNQLTGEIPEHLA---MGCFNLEYLLLSNNSLQG---QLFSK--KINLTKLKRLN 483
            L L +  +T +    L        +L  L L +N L                ++L+ L 
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 484 LDGNHF----IGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEG 539
           +          G +   L    SL+ L ++ N++        G     + ++ P   LE 
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE-----GARLLCETLLEPGCQLE- 316

Query: 540 PIPSEFCQLDYLEILDLSKNNI---AGRPLNGAFSKCSYLLTLDLCNNRLNGN------- 589
                         L +   +         +   ++  +LL L + NNRL          
Sbjct: 317 -------------SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 363

Query: 590 ---IPNWMGRLSQLRYLILANNNF--EGEVPLR--LCQLQKLRLLDLSHNNFS 635
               P      S LR L LA+ +        L   L     LR LDLS+N   
Sbjct: 364 GLGQPG-----SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 72.3 bits (178), Expect = 2e-13
 Identities = 62/267 (23%), Positives = 96/267 (35%), Gaps = 41/267 (15%)

Query: 31  SLNIASALYLNFSLFTPFQQLESLDLSGNNI--AGCVENEGL-EKLSGLSNLKFLDLSHN 87
            L       +   L TP  +++ L L    +  AGC     L   L  L  L+ L LS N
Sbjct: 67  ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC---GVLSSTLRTLPTLQELHLSDN 123

Query: 88  SFNNSVLSSLAGL-----SSLKNLSLAYNRL--EGSINI-EELDSLSNLEGLDMSDNEID 139
              ++ L  L          L+ L L Y  L       +   L +  + + L +S+N+I+
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Query: 140 NLVVPKDYRGLR----KLRFLDLSGLRIRD-GSKVLHS-IGSFPSLKTLYLKSNNFAKTV 193
              V    +GL+    +L  L L    +     + L   + S  SL+ L L SN      
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL---- 239

Query: 194 TTTQGLCELA--------HLQELYIDHNDF----IGSLPWCLANLTSLRVLHVPDNQLT- 240
               G+ EL          L+ L+I          G L   L    SL+ L +  N+L  
Sbjct: 240 -GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298

Query: 241 ---ENLSSSPLMHLTSIELLILSNNHF 264
                L  + L     +E L + +  F
Sbjct: 299 EGARLLCETLLEPGCQLESLWVKSCSF 325

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 71.9 bits (177), Expect = 3e-13
 Identities = 59/281 (20%), Positives = 100/281 (35%), Gaps = 35/281 (12%)

Query: 14  SVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNI--AGCVENEGL- 70
           S L    T + + +    L  A    L   L  P  +LE L L   ++  A C   E L 
Sbjct: 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC---EPLA 163

Query: 71  EKLSGLSNLKFLDLSHNSFNNSVLSSLAGL-----SSLKNLSLAYNRL--EGSINI-EEL 122
             L    + K L +S+N  N + +  L          L+ L L    +  +   ++   +
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 123 DSLSNLEGLDMSDNEIDNLVVPKDYRGLRK----LRFLDLSGLRIRD-GSKVL-HSIGSF 176
            S ++L  L +  N++ ++ + +   GL      LR L +    I   G   L   + + 
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283

Query: 177 PSLKTLYLKSNNFAKTVTTTQGLCEL-----AHLQELYIDHNDF----IGSLPWCLANLT 227
            SLK L L  N         + LCE        L+ L++    F           LA   
Sbjct: 284 ESLKELSLAGNEL--GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341

Query: 228 SLRVLHVPDNQLT----ENLSSSPLMHLTSIELLILSNNHF 264
            L  L + +N+L       L        + + +L L++   
Sbjct: 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 71.9 bits (177), Expect = 3e-13
 Identities = 59/315 (18%), Positives = 100/315 (31%), Gaps = 52/315 (16%)

Query: 354 NTNLRSIILANNSLSGP-FRLPTRSRKNIIALDISYNKLQGHIPVEIGKVL---PNLGFL 409
           + +++S+ +    LS   +       +    + +    L      +I   L   P L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 410 TISFNAFNGSIPSSFGDM-----NSLIYLDLSNNQLTGEIPEHLA---MGCFNLEYLLLS 461
            +  N                    +  L L N  LTG     L+        L+ L LS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 462 NNSLQG---QLFSKKI--NLTKLKRLNLDGNHF----IGGIPESLSNCSSLQGLYISDND 512
           +N L     QL  + +     +L++L L+           +   L      + L +S+ND
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 513 ISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI---AGRPLNGA 569
           I+ +     G       +                    LE L L    +     R L G 
Sbjct: 182 INEA-----GVRVLCQGLKDSPCQ--------------LEALKLESCGVTSDNCRDLCGI 222

Query: 570 FSKCSYLLTLDLCNNRLNGN-----IPNWMGRLSQLRYLILANNNF--EGEVPL--RLCQ 620
            +  + L  L L +N+L         P  +   S+LR L +       +G   L   L  
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282

Query: 621 LQKLRLLDLSHNNFS 635
            + L+ L L+ N   
Sbjct: 283 KESLKELSLAGNELG 297

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 69.2 bits (170), Expect = 2e-12
 Identities = 54/264 (20%), Positives = 89/264 (33%), Gaps = 46/264 (17%)

Query: 34  IASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGL-----SNLKFLDLSHNS 88
           ++S L            L+ L LS N +     + GL+ L          L+ L L + S
Sbjct: 105 LSSTLRTL-------PTLQELHLSDNLL----GDAGLQLLCEGLLDPQCRLEKLQLEYCS 153

Query: 89  FNNSVLSSLA----GLSSLKNLSLAYNRL--EGSINIEEL--DSLSNLEGLDMSDNEIDN 140
            + +    LA         K L+++ N +   G   + +   DS   LE L +    + +
Sbjct: 154 LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213

Query: 141 LVVPKDYRGLRK---LRFLDLSGLRIRD-GSKVLHSIGSFP--SLKTLYLKSNNF----A 190
                    +     LR L L   ++ D G   L      P   L+TL++          
Sbjct: 214 DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC 273

Query: 191 KTVTTTQGLCELAHLQELYIDHNDF--IGSLPWCLA---NLTSLRVLHVPDNQLT----E 241
             +   + L     L+EL +  N+    G+   C         L  L V     T     
Sbjct: 274 GDL--CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS 331

Query: 242 NLSSSPLMHLTSIELLILSNNHFQ 265
           + SS  L     +  L +SNN  +
Sbjct: 332 HFSSV-LAQNRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.3 bits (165), Expect = 9e-12
 Identities = 63/410 (15%), Positives = 116/410 (28%), Gaps = 115/410 (28%)

Query: 379 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFN----GSIPSSFGDMNSLIYLD 434
            +I +LDI   +L      E+  +L     + +            I S+     +L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 435 LSNNQLTGE----IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFI 490
           L +N+L       + + L      ++ L L N  L                         
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL--------------------TGAGC 102

Query: 491 GGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDY 550
           G +  +L    +LQ L++SDN +  +     G     + ++ P   LE            
Sbjct: 103 GVLSSTLRTLPTLQELHLSDNLLGDA-----GLQLLCEGLLDPQCRLE------------ 145

Query: 551 LEILDLSKNNI---AGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRL-----SQLRY 602
              L L   ++   +  PL            L + NN +N      + +       QL  
Sbjct: 146 --KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203

Query: 603 LILANNNFEGE----VPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIP 658
           L L +     +    +   +     LR L L  N                 + G  +L P
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG--------------DVGMAELCP 249

Query: 659 TYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRI 718
              +                                 P   +  L +    +  +    +
Sbjct: 250 GLLH---------------------------------PSSRLRTLWIWECGITAKGCGDL 276

Query: 719 GELIR----IHTLNLSRNNLTGT-----IPVTFSNLRQVESLDLSYNNLT 759
             ++R    +  L+L+ N L                 Q+ESL +   + T
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.6 bits (158), Expect = 6e-11
 Identities = 63/392 (16%), Positives = 112/392 (28%), Gaps = 97/392 (24%)

Query: 427 MN-SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ-------GQLFSKKINLT- 477
           M+  +  LD+   +L+      L       + + L +  L                 L  
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 478 -------------------------KLKRLNLDGNHF----IGGIPESLSNCSSLQGLYI 508
                                    K+++L+L          G +  +L    +LQ L++
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 509 SDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI---AGRP 565
           SDN +  +     G     + ++ P                 LE L L   ++   +  P
Sbjct: 121 SDNLLGDA-----GLQLLCEGLLDPQCR--------------LEKLQLEYCSLSAASCEP 161

Query: 566 LNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRL-----SQLRYLILANNNFEGE----VPL 616
           L            L + NN +N      + +       QL  L L +     +    +  
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221

Query: 617 RLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMG 676
            +     LR L L  N         L    LH         P+ R     +       + 
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLH---------PSSRLRTLWIWEC---GIT 269

Query: 677 EKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIR-----IHTLNLSR 731
            K   D     R+        ES+  L L+ N+L  E    + E +      + +L +  
Sbjct: 270 AKGCGDLCRVLRA-------KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322

Query: 732 NNLTGT----IPVTFSNLRQVESLDLSYNNLT 759
            + T           +  R +  L +S N L 
Sbjct: 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 86.9 bits (216), Expect = 1e-19
 Identities = 33/167 (19%), Positives = 70/167 (41%), Gaps = 13/167 (7%)

Query: 74  SGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDM 133
           + +++L ++ L++ +  +  L+ +    ++K+L++         N   +  LSNLE L +
Sbjct: 41  AQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRI 95

Query: 134 SDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTV 193
              ++ +  +P +  GL  L  LD+S     D    L  I + P + ++ L  N     +
Sbjct: 96  MGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSI--LTKINTLPKVNSIDLSYNGA---I 149

Query: 194 TTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLT 240
           T    L  L  L+ L I  +  +      + +   L  L+     + 
Sbjct: 150 TDIMPLKTLPELKSLNIQFDG-VHDYRG-IEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 26/187 (13%), Positives = 66/187 (35%), Gaps = 14/187 (7%)

Query: 77  SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDN 136
           S  K         +++   + A ++SL  ++LA   +    ++  ++   N++ L +++ 
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNI 76

Query: 137 EIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTT 196
              N        GL  L  L + G  +      + ++    SL  L +  +      +  
Sbjct: 77  HATNY---NPISGLSNLERLRIMGKDVTSDK--IPNLSGLTSLTLLDISHSAH--DDSIL 129

Query: 197 QGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIEL 256
             +  L  +  + + +N  I  +   L  L  L+ L++  + +        +     +  
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQ 185

Query: 257 LILSNNH 263
           L   +  
Sbjct: 186 LYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.5 bits (194), Expect = 1e-16
 Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 9/116 (7%)

Query: 50  QLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLA 109
            LE L + G ++     ++ +  LSGL++L  LD+SH++ ++S+L+ +  L  + ++ L+
Sbjct: 89  NLERLRIMGKDV----TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 110 YNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRD 165
           YN      +I  L +L  L+ L++  + + +    +      KL  L      I  
Sbjct: 145 YNGAIT--DIMPLKTLPELKSLNIQFDGVHDY---RGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 11/186 (5%)

Query: 404 PNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIP-EHLAMGCFNLEYLLLSN 462
                        + +   +   MNSL Y+ L+N  +T     E+      N++ L ++N
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAH----NIKDLTINN 75

Query: 463 NSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMG 522
                  ++    L+ L+RL + G         +LS  +SL  L IS +    SI T + 
Sbjct: 76  IHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 523 NISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLC 582
            +  +++I +  N     I      L  L+ L++  + +              L  L   
Sbjct: 134 TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAF 189

Query: 583 NNRLNG 588
           +  + G
Sbjct: 190 SQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 24/162 (14%), Positives = 56/162 (34%), Gaps = 8/162 (4%)

Query: 475 NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPD 534
            +  L  + L   + +  +   +    +++ L I++   +   P  +  +S L+ + +  
Sbjct: 42  QMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 535 NHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWM 594
             +          L  L +LD+S +      L    +    + ++DL  N    +I   +
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAITDIMP-L 155

Query: 595 GRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSG 636
             L +L+ L +  +       +      KL  L        G
Sbjct: 156 KTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.9 bits (164), Expect = 8e-13
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 8/102 (7%)

Query: 40  LNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAG 99
                 +    L  LD+S +      ++  L K++ L  +  +DLS+N    + +  L  
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAH----DDSILTKINTLPKVNSIDLSYNG-AITDIMPLKT 157

Query: 100 LSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNL 141
           L  LK+L++ ++ +    +   ++    L  L      I   
Sbjct: 158 LPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 28/167 (16%), Positives = 63/167 (37%), Gaps = 15/167 (8%)

Query: 123 DSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTL 182
            +        +  +   N+   +    +  L ++ L+ + + D    L  I    ++K L
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQ----MNSLTYITLANINVTD----LTGIEYAHNIKDL 71

Query: 183 YLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTEN 242
            + + +     T    +  L++L+ L I   D        L+ LTSL +L +  +    +
Sbjct: 72  TINNIH----ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD-D 126

Query: 243 LSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQI 289
              + +  L  +  + LS N   I   + P     +LK  + + + +
Sbjct: 127 SILTKINTLPKVNSIDLSYNG-AIT-DIMPLKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 8e-11
 Identities = 24/185 (12%), Positives = 61/185 (32%), Gaps = 12/185 (6%)

Query: 379 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNN 438
           K  +   +  +       +   + + +L ++T++       + +     +++  L ++N 
Sbjct: 23  KAYLNGLLGQSSTA---NITEAQ-MNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNI 76

Query: 439 QLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLS 498
             T      ++ G  NLE L +    +          LT L  L++  +     I   ++
Sbjct: 77  HATN--YNPIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 499 NCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSK 558
               +  + +S N     I   +  +  L ++ +  + +             L  L    
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190

Query: 559 NNIAG 563
             I G
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 21/173 (12%), Positives = 58/173 (33%), Gaps = 32/173 (18%)

Query: 475 NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPD 534
                    L  +     I  + +  +SL  + +++ +++        +++ ++      
Sbjct: 21  TFKAYLNGLLGQSS-TANI--TEAQMNSLTYITLANINVT--------DLTGIE------ 63

Query: 535 NHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWM 594
                           ++ L ++  +          S  S L  L +    +  +    +
Sbjct: 64  ------------YAHNIKDLTINNIHATN---YNPISGLSNLERLRIMGKDVTSDKIPNL 108

Query: 595 GRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSL 647
             L+ L  L ++++  +  +  ++  L K+  +DLS+N     I P      L
Sbjct: 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPEL 161

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 34/214 (15%), Positives = 63/214 (29%), Gaps = 60/214 (28%)

Query: 547 QLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILA 606
           Q++ L  + L+  N+    L G       +  L + N     N    +  LS L  L + 
Sbjct: 42  QMNSLTYITLANINVTD--LTG-IEYAHNIKDLTINNIHAT-NYNP-ISGLSNLERLRIM 96

Query: 607 NNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDI 666
             +   +    L  L  L LLD+SH+     I   ++                       
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT---------------------- 134

Query: 667 VSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHT 726
                                         L  ++ +DLS N  I +I   +  L  + +
Sbjct: 135 ------------------------------LPKVNSIDLSYNGAITDIMP-LKTLPELKS 163

Query: 727 LNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG 760
           LN+  + +         +  ++  L      + G
Sbjct: 164 LNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 697 LESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYN 756
           L ++  L +    +  +    +  L  +  L++S +    +I    + L +V S+DLSYN
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 757 NLTGKIPPRLVELNALAVFTVAHNNLS 783
                I P L  L  L    +  + + 
Sbjct: 147 GAITDIMP-LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 703 LDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKI 762
           L ++         + I  L  +  L +   ++T       S L  +  LD+S++     I
Sbjct: 71  LTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 763 PPRLVELNALAVFTVAHNNLSGKI 786
             ++  L  +    +++N     I
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 31/220 (14%), Positives = 66/220 (30%), Gaps = 64/220 (29%)

Query: 224 ANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFH 283
           A + SL  + + +  +T     + + +  +I+ L ++N H     +  P    S L+   
Sbjct: 41  AQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLR 94

Query: 284 GRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMR 343
                +                 TS  + +                              
Sbjct: 95  IMGKDV-----------------TSDKIPN------------------------------ 107

Query: 344 GEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVL 403
                  L   T+L  + +++++          +   + ++D+SYN     I   +   L
Sbjct: 108 -------LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKT-L 158

Query: 404 PNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 443
           P L  L I F+  +        D   L  L   +  + G+
Sbjct: 159 PELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 697 LESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYN 756
           + S+  + L+    + ++   I     I  L ++  + T   P   S L  +E L +   
Sbjct: 43  MNSLTYITLANIN-VTDLTG-IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK 98

Query: 757 NLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQ 792
           ++T    P L  L +L +  ++H+     I  +I  
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 86.0 bits (213), Expect = 3e-18
 Identities = 57/281 (20%), Positives = 97/281 (34%), Gaps = 38/281 (13%)

Query: 356 NLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNA 415
           + R  +   + ++    +P+   +N I L     KL+  I         +L  + IS N 
Sbjct: 10  SNRVFLCQESKVT---EIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQND 65

Query: 416 FNGSIPSS-FGDMNSLIYLDLSN-NQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKK 473
               I +  F ++  L  + +   N L   I         NL+YLL+SN  ++      K
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124

Query: 474 INLTKLKRLNLDGNHFIGGIPE-SLSNCSS-LQGLYISDNDISGSIPTWMGNISFLDAII 531
           I+  +   L++  N  I  I   S    S     L+++ N I   I              
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSA---------- 173

Query: 532 MPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP 591
                        F      E+     NN+   P N  F   S  + LD+   R++    
Sbjct: 174 -------------FNGTQLDELNLSDNNNLEELP-NDVFHGASGPVILDISRTRIHSLPS 219

Query: 592 NWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHN 632
             +  L +LR     N     ++P  L +L  L    L++ 
Sbjct: 220 YGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.9 bits (179), Expect = 9e-14
 Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 27/226 (11%)

Query: 45  FTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSL-----AG 99
           F+ F  LE +++S N++   +E +     S L  L  + +     NN  L  +       
Sbjct: 50  FSGFGDLEKIEISQNDVLEVIEADV---FSNLPKLHEIRIEKA--NN--LLYINPEAFQN 102

Query: 100 LSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLR-KLRFLDL 158
           L +L+ L ++   ++  +             LD+ DN   + +    + GL  +   L L
Sbjct: 103 LPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161

Query: 159 SGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGS 218
           +   I+   ++ +S  +   L  L L  NN  + +         +    L I     I S
Sbjct: 162 NKNGIQ---EIHNSAFNGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRTR-IHS 216

Query: 219 LP-WCLANLTSLRVLHVPDNQLTENLSSSP-LMHLTSIELLILSNN 262
           LP + L NL  LR         T NL   P L  L ++    L+  
Sbjct: 217 LPSYGLENLKKLRARS------TYNLKKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.8 bits (163), Expect = 8e-12
 Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 15/195 (7%)

Query: 77  SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSD- 135
            N   L             + +G   L+ + ++ N +   I  +   +L  L  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 136 NEIDNLVVPKDYRGLRKLRFLDLSGLRIR---DGSKVLHSIGSFPSLKTLYLKSNNFAKT 192
           N +  +  P+ ++ L  L++L +S   I+   D  K+            L ++ N    T
Sbjct: 90  NNLLYI-NPEAFQNLPNLQYLLISNTGIKHLPDVHKI-----HSLQKVLLDIQDNINIHT 143

Query: 193 VTTT--QGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMH 250
           +      GL        L+++ N  I  +     N T L  L++ DN   E L +     
Sbjct: 144 IERNSFVGLSFE--SVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200

Query: 251 LTSIELLILSNNHFQ 265
            +   +L +S     
Sbjct: 201 ASGPVILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 41/266 (15%), Positives = 76/266 (28%), Gaps = 55/266 (20%)

Query: 493 IPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE 552
           IP  L    +   L      +   I                           F     LE
Sbjct: 24  IPSDLP--RNAIELRFVLTKLR-VIQ-----------------------KGAFSGFGDLE 57

Query: 553 ILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWM-GRLSQLRYLILANNNFE 611
            +++S+N++        FS    L  + +        I       L  L+YL+++N   +
Sbjct: 58  KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117

Query: 612 GEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNV 671
               +      +  LLD+  N     I        L  E     L    +N    +    
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERNS-FVGLSFESVILWL---NKNGIQEIH--- 170

Query: 672 GPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRI-GELIRIHTLNLS 730
                            +  + G  L+    L+LS N  + E+P+ +         L++S
Sbjct: 171 -----------------NSAFNGTQLDE---LNLSDNNNLEELPNDVFHGASGPVILDIS 210

Query: 731 RNNLTGTIPVTFSNLRQVESLDLSYN 756
           R  +         NL+++ +      
Sbjct: 211 RTRIHSLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 49/386 (12%), Positives = 97/386 (25%), Gaps = 82/386 (21%)

Query: 203 AHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSN- 261
            +  EL               +    L  + +  N + E + +    +L  +  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 262 NHFQIPMSLEP--FFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDG 319
           N+      + P  F N   L+        I                              
Sbjct: 90  NNLL---YINPEAFQNLPNLQYLLISNTGI------------------------------ 116

Query: 320 GTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRK 379
             +P         + ++              +++N N+ +I    NS  G   L   S  
Sbjct: 117 KHLPDVHKIHSLQKVLLD-------------IQDNINIHTI--ERNSFVG---LSFESVI 158

Query: 380 NIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQ 439
               L ++ N +Q  I                  N         F   +  + LD+S  +
Sbjct: 159 ----LWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213

Query: 440 LTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSN 499
           +   +P +       L      N      L      L  L   +L             S+
Sbjct: 214 IH-SLPSYGLENLKKLRARSTYNLKKLPTLE----KLVALMEASLTYP----------SH 258

Query: 500 CSSL-------QGLYISDNDISG-SIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYL 551
           C +          L+   N         +M       + +  DN        +    ++ 
Sbjct: 259 CCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGFDMTYTEFD 318

Query: 552 EILDLSKNNIAGRPLNGAFSKCSYLL 577
             L     ++   P   AF+ C  ++
Sbjct: 319 YDLCNEVVDVTCSPKPDAFNPCEDIM 344

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 33/238 (13%), Positives = 60/238 (25%), Gaps = 59/238 (24%)

Query: 551 LEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWM-GRLSQLRYLILANNN 609
              L      +      GAFS    L  +++  N +   I   +   L +L  + +   N
Sbjct: 32  AIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 610 FEGEVPLRLCQ-LQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVS 668
               +     Q L  L+ L              + NT +         +P          
Sbjct: 91  NLLYINPEAFQNLPNLQYLL-------------ISNTGIKH-------LPDVHK------ 124

Query: 669 YNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRI--GELIRIHT 726
                                             LD+  N  I  I      G       
Sbjct: 125 --------------------------IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158

Query: 727 LNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPR-LVELNALAVFTVAHNNLS 783
           L L++N +       F+  +  E      NNL  ++P       +   +  ++   + 
Sbjct: 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH 215

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 41/220 (18%), Positives = 74/220 (33%), Gaps = 37/220 (16%)

Query: 429 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN----SLQGQLFSKKINLTKLKRLNL 484
           S   L L    L   IP H      N+  + +S +     L+   F    NL+K+  + +
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY---NLSKVTHIEI 87

Query: 485 DGNHFIGGIP-ESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPS 543
                +  I  ++L     L+ L I +  +    P                        +
Sbjct: 88  RNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD----------------------LT 124

Query: 544 EFCQLDYLEILDLSKNNIAGRPLNGAFSK-CSYLLTLDLCNNRLNGNIPNWMGRLSQLRY 602
           +    D   IL+++ N         AF   C+  LTL L NN    ++  +    ++L  
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDA 183

Query: 603 LILANNNFEGEVPLRLCQ--LQKLRLLDLSHNNFSGQIPP 640
           + L  N +   +             LLD+S  + +  +P 
Sbjct: 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 41/226 (18%), Positives = 77/226 (34%), Gaps = 34/226 (15%)

Query: 51  LESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSL-----AGLSSLKN 105
            ++L L   ++     +      S L N+  + +S +      L  L       LS + +
Sbjct: 33  TQTLKLIETHLRTIPSHA----FSNLPNISRIYVSIDV----TLQQLESHSFYNLSKVTH 84

Query: 106 LSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRD 165
           + +   R    I+ + L  L  L+ L + +  +                 L+++      
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEIT------ 138

Query: 166 GSKVLHSI--GSFPSL----KTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSL 219
            +  + SI   +F  L     TL L +N F    +          L  +Y++ N ++  +
Sbjct: 139 DNPYMTSIPVNAFQGLCNETLTLKLYNNGFT---SVQGYAFNGTKLDAVYLNKNKYLTVI 195

Query: 220 P-WCLANLTS-LRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNH 263
                  + S   +L V    +T  L S  L HL     LI  N  
Sbjct: 196 DKDAFGGVYSGPSLLDVSQTSVTA-LPSKGLEHLKE---LIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 71.6 bits (176), Expect = 6e-14
 Identities = 38/208 (18%), Positives = 84/208 (40%), Gaps = 9/208 (4%)

Query: 380 NIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPS-SFGDMNSLIYLDLSNN 438
           +   L +    L+  IP      LPN+  + +S +     + S SF +++ + ++++ N 
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 439 QLTGEIPEHLAMGCFNLEYLLLSNNSLQG-QLFSKKINLTKLKRLNLDGNHFIGGIPESL 497
           +    I          L++L + N  L+     +K  +      L +  N ++  IP + 
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 498 --SNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSE-FCQL-DYLEI 553
               C+    L + +N  + S+  +  N + LDA+ +  N     I  + F  +     +
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 554 LDLSKNNIAGRPLNGAFSKCSYLLTLDL 581
           LD+S+ ++   P +        L+  + 
Sbjct: 210 LDVSQTSVTALP-SKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 36/247 (14%), Positives = 81/247 (32%), Gaps = 37/247 (14%)

Query: 8   DCCQWQSVLCNATTSRVI--------AIDLLSLNIASALYLNFSLFTPFQQLESLDLSGN 59
           +C Q +         + I         + L+  ++ +   +    F+    +  + +S +
Sbjct: 9   ECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRT---IPSHAFSNLPNISRIYVSID 65

Query: 60  NIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSL-----AGLSSLKNLSLAYNRLE 114
                +E+        LS +  +++     N   L+ +       L  LK L +    L+
Sbjct: 66  VTLQQLESHS---FYNLSKVTHIEIR----NTRNLTYIDPDALKELPLLKFLGIFNTGLK 118

Query: 115 GSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRK-LRFLDLSGLRIRDGSKVLHSI 173
              ++ ++ S      L+++DN     +    ++GL      L L           +   
Sbjct: 119 MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT----SVQG- 173

Query: 174 GSF--PSLKTLYLKSNNFAKTVTTT--QGLCELAHLQELYIDHNDFIGSLP-WCLANLTS 228
            +F    L  +YL  N +   +      G+        L +     + +LP   L +L  
Sbjct: 174 YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG--PSLLDVSQTS-VTALPSKGLEHLKE 230

Query: 229 LRVLHVP 235
           L   +  
Sbjct: 231 LIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 25/144 (17%), Positives = 56/144 (38%), Gaps = 8/144 (5%)

Query: 500 CSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKN 559
           C   +   ++  DI   IP+   +   L    + + HL       F  L  +  + +S +
Sbjct: 10  CHQEEDFRVTCKDIQ-RIPSLPPSTQTLK---LIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 560 NIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP-NWMGRLSQLRYLILANNNFEGEVP--L 616
               +  + +F   S +  +++ N R    I  + +  L  L++L + N   +   P   
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLT 124

Query: 617 RLCQLQKLRLLDLSHNNFSGQIPP 640
           ++       +L+++ N +   IP 
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 4/128 (3%)

Query: 170 LHSIGSFP-SLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPW-CLANLT 227
           +  I S P S +TL L   +       +     L ++  +Y+  +  +  L      NL+
Sbjct: 23  IQRIPSLPPSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS 80

Query: 228 SLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGREN 287
            +  + + + +    +    L  L  ++ L + N   ++   L   ++     I    +N
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDN 140

Query: 288 QIFGEIES 295
                I  
Sbjct: 141 PYMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 30/240 (12%), Positives = 74/240 (30%), Gaps = 61/240 (25%)

Query: 551 LEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWM-GRLSQLRYLILANNN 609
            + L L + ++   P + AFS    +  + +  +     + +     LS++ ++ + N  
Sbjct: 33  TQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 610 FEGEVPLRLCQ-LQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVS 668
               +     + L  L+ L + +       P   D T ++                    
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFP---DLTKVY-------------------- 127

Query: 669 YNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRI--GELIRIHT 726
                                        +    L+++ N  +  IP     G      T
Sbjct: 128 ---------------------------STDIFFILEITDNPYMTSIPVNAFQGLCNETLT 160

Query: 727 LNLSRNNLTGTIPV-TFSNLRQVESLDLSYNNLTGKIPPRLVE--LNALAVFTVAHNNLS 783
           L L  N  T ++    F+   +++++ L+ N     I         +  ++  V+  +++
Sbjct: 161 LKLYNNGFT-SVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 30/161 (18%), Positives = 54/161 (33%), Gaps = 10/161 (6%)

Query: 330 HHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSG-PFRLPTRSRKNIIALDISY 388
             +  + I +           L+    L+ + + N  L   P      S      L+I+ 
Sbjct: 80  SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139

Query: 389 NKLQGHIPVEIGKVLPN-LGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEH 447
           N     IPV   + L N    L +  N F  S+     +   L  + L+ N+    I + 
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198

Query: 448 LAMGCFN-LEYLLLSNN---SLQGQLFSKKINLTKLKRLNL 484
              G ++    L +S     +L  +      +L +L   N 
Sbjct: 199 AFGGVYSGPSLLDVSQTSVTALPSKGLE---HLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 13/96 (13%), Positives = 31/96 (32%), Gaps = 5/96 (5%)

Query: 697 LESIHGLDLSCNKLIGEIPSRI-GELIRIHTLNLSRNNLTGTIPV-TFSNLRQVESLDLS 754
           L +I  + +S +  + ++ S     L ++  + +        I       L  ++ L + 
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 755 YNNLTGKIPPR--LVELNALAVFTVAHNNLSGKIPE 788
              L    P    +   +   +  +  N     IP 
Sbjct: 114 NTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 79.6 bits (197), Expect = 2e-16
 Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 33/228 (14%)

Query: 51  LESLDLSGNNIAGCVENEGLEK--LSGLSNLKFLDLSHNSFNNSVLSSL-----AGLSSL 103
            ++LDLS N +        L          L+ LDLS        + ++       LS L
Sbjct: 30  TKNLDLSFNPLR------HLGSYSFFSFPELQVLDLSRCE-----IQTIEDGAYQSLSHL 78

Query: 104 KNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRI 163
             L L  N ++ S+ +     LS+L+ L   +  + +L        L+ L+ L+++   I
Sbjct: 79  STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLI 136

Query: 164 RDGSKVLHSIGSF---PSLKTLYLKSNNFAKTVTTT--QGLCELAHLQ-ELYIDHNDFIG 217
               +       F    +L+ L L SN   +++  T  + L ++  L   L +  N  + 
Sbjct: 137 ----QSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNP-MN 190

Query: 218 SLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQ 265
            +         L+ L +  NQL  ++       LTS++ + L  N + 
Sbjct: 191 FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.5 bits (194), Expect = 5e-16
 Identities = 47/215 (21%), Positives = 77/215 (35%), Gaps = 38/215 (17%)

Query: 429 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKINLTKLKRLNLD 485
           S   LDLS N L   +  +       L+ L LS     +++   +    +L+ L  L L 
Sbjct: 29  STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ---SLSHLSTLILT 84

Query: 486 GNHFIGGIPESL-SNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSE 544
           GN  I  +     S  SSLQ L   + +++ S+                           
Sbjct: 85  GNP-IQSLALGAFSGLSSLQKLVAVETNLA-SLE-----------------------NFP 119

Query: 545 FCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRY-- 602
              L  L+ L+++ N I    L   FS  + L  LDL +N++       +  L Q+    
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 603 --LILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635
             L L+ N     +     +  +L+ L L  N   
Sbjct: 180 LSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 53/226 (23%), Positives = 90/226 (39%), Gaps = 25/226 (11%)

Query: 370 PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSS-FGDMN 428
           P  LP     +   LD+S+N L+ H+        P L  L +S      +I    +  ++
Sbjct: 23  PDNLPF----STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLS 76

Query: 429 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKINLTKLKRLNLD 485
            L  L L+ N +   +      G  +L+ L+       SL+        +L  LK LN+ 
Sbjct: 77  HLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIG---HLKTLKELNVA 132

Query: 486 GNHFIGGIPES--LSNCSSLQGLYISDNDISGSIP----TWMGNISFLDA-IIMPDNHLE 538
            N  I         SN ++L+ L +S N I  SI       +  +  L+  + +  N + 
Sbjct: 133 HNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 539 GPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNN 584
              P  F ++  L+ L L  N +   P +G F + + L  + L  N
Sbjct: 191 FIQPGAFKEIR-LKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 49/217 (22%), Positives = 81/217 (37%), Gaps = 29/217 (13%)

Query: 542 PSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLR 601
              F     L++LDLS+  I     +GA+   S+L TL L  N +          LS L+
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 602 YLILANNNFEGEVPLRLCQLQKLRLLDLSHNNF-SGQIPPCLDN-TSLHREEGYYDLIPT 659
            L+    N        +  L+ L+ L+++HN   S ++P    N T+L     + DL   
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE----HLDL--- 156

Query: 660 YRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIG 719
             N+   +       + +   ++ +                  LDLS N  +  I     
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLS------------------LDLSLNP-MNFIQPGAF 197

Query: 720 ELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYN 756
           + IR+  L L  N L       F  L  ++ + L  N
Sbjct: 198 KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 46/246 (18%), Positives = 88/246 (35%), Gaps = 45/246 (18%)

Query: 126 SNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTL 182
            + + LD+S N + +L     +    +L+ LDLS   I+     +   G++     L TL
Sbjct: 28  FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQT----IED-GAYQSLSHLSTL 81

Query: 183 YLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP-WCLANLTSLRVLHVPDNQLTE 241
            L  N              L+ LQ+L     + + SL  + + +L +L+ L+V  N +  
Sbjct: 82  ILTGNPIQSLALGA--FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 242 NLSSSPLMHLTSIELLILSNNHFQIPMSLEP--FFNYSKLKIFHGRENQIFGEIESSHSS 299
                   +LT++E L LS+N  Q   S+         ++ + +   +     +      
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQ---SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 300 LTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRS 359
              + +L  ++L                             N     P  + +  T+L+ 
Sbjct: 196 AFKEIRLKELALDT---------------------------NQLKSVPDGIFDRLTSLQK 228

Query: 360 IILANN 365
           I L  N
Sbjct: 229 IWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 48/275 (17%), Positives = 85/275 (30%), Gaps = 82/275 (29%)

Query: 227 TSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEP--FFNYSKLKIFHG 284
            S + L +  N L  +L S        +++L LS    Q   ++E   + + S L     
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLIL 83

Query: 285 RENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRG 344
             N                  + S+                                   
Sbjct: 84  TGNP-----------------IQSL----------------------------------- 91

Query: 345 EFPSWLLENNTNLRSIILANNSL----SGPFRLPTRSRKNIIALDISYNKLQGHIPVEIG 400
                     ++L+ ++    +L    + P       ++    L++++N +Q     E  
Sbjct: 92  --ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE----LNVAHNLIQSFKLPEYF 145

Query: 401 KVLPNLGFLTISFNAFNGSIPS-SFGDMNSLIY----LDLSNNQLTGEIPEHLAMGCFNL 455
             L NL  L +S N    SI       ++ +      LDLS N +   I    A     L
Sbjct: 146 SNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPG-AFKEIRL 202

Query: 456 EYLLLSNN---SLQGQLFSKKINLTKLKRLNLDGN 487
           + L L  N   S+   +F     LT L+++ L  N
Sbjct: 203 KELALDTNQLKSVPDGIFD---RLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 50/274 (18%), Positives = 86/274 (31%), Gaps = 80/274 (29%)

Query: 203 AHLQELYIDHNDFIGSL-PWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSN 261
              + L +  N  +  L  +   +   L+VL +   ++   +       L+ +  LIL+ 
Sbjct: 28  FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 262 NHFQIPMSLEP--FFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDG 319
           N  Q   SL    F   S L+     E                   L S+          
Sbjct: 86  NPIQ---SLALGAFSGLSSLQKLVAVETN-----------------LASL---------- 115

Query: 320 GTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLS-----GPF-RL 373
                                       ++ + +   L+ + +A+N +        F  L
Sbjct: 116 ---------------------------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 374 PTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGF----LTISFNAFNGSIPSSFGDMNS 429
                 N+  LD+S NK+Q  I     +VL  +      L +S N  N  I         
Sbjct: 149 T-----NLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR 201

Query: 430 LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN 463
           L  L L  NQL   +P+ +     +L+ + L  N
Sbjct: 202 LKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 81.0 bits (199), Expect = 6e-16
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 11/146 (7%)

Query: 38  LYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSL 97
           L  N  L   +  +  L L+  ++        L  L  L  +  LDLSHN    ++  +L
Sbjct: 430 LLENSVLKMEYADVRVLHLAHKDL------TVLCHLEQLLLVTHLDLSHNRLR-ALPPAL 482

Query: 98  AGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLD 157
           A L  L+ L  + N LE   N++ + +L  L+ L + +N +      +      +L  L+
Sbjct: 483 AALRCLEVLQASDNALE---NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539

Query: 158 LSGLRIRDGSKVLHSIGS-FPSLKTL 182
           L G  +     +   +    PS+ ++
Sbjct: 540 LQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.9 bits (178), Expect = 2e-13
 Identities = 36/221 (16%), Positives = 71/221 (32%), Gaps = 19/221 (8%)

Query: 45  FTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLK 104
               +QL   +LS              +L     L+ L+  +     +++  +  L  L 
Sbjct: 345 SATDEQLFRCELSVEKS-----TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 399

Query: 105 NLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIR 164
                         ++ +D +      D+    +              +R L L+   + 
Sbjct: 400 YEKETLQYFS---TLKAVDPMRAAYLDDLRSKFLLE--NSVLKMEYADVRVLHLAHKDLT 454

Query: 165 DGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLA 224
                L  +     +  L L  N           L  L  L+ L    N  + ++   +A
Sbjct: 455 V----LCHLEQLLLVTHLDLSHNRLR---ALPPALAALRCLEVLQASDN-ALENVD-GVA 505

Query: 225 NLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQ 265
           NL  L+ L + +N+L ++ +  PL+    + LL L  N   
Sbjct: 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.3 bits (161), Expect = 2e-11
 Identities = 37/215 (17%), Positives = 75/215 (34%), Gaps = 16/215 (7%)

Query: 31  SLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLD-LSHNSF 89
           S           S+      L+S   S   +           L+ +  ++ LD L +   
Sbjct: 345 SATDEQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE 403

Query: 90  NNSVLSSLAGLSSLKNLSLAYNRLEGSIN-IEELDSLSNLEGLDMSDNEIDNLVVPKDYR 148
                S+L  +  ++   L   R +  +         +++  L ++  ++  L       
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL---CHLE 460

Query: 149 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQEL 208
            L  +  LDLS  R+R    +  ++ +   L+ L    N     +    G+  L  LQEL
Sbjct: 461 QLLLVTHLDLSHNRLRA---LPPALAALRCLEVLQASDNA----LENVDGVANLPRLQEL 513

Query: 209 YIDHNDFIGSLP--WCLANLTSLRVLHVPDNQLTE 241
            + +N  +        L +   L +L++  N L +
Sbjct: 514 LLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.9 bits (160), Expect = 3e-11
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 15/115 (13%)

Query: 48  FQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLS 107
              +  LDLS N +           L+ L  L+ L  S N+  N  +  +A L  L+ L 
Sbjct: 462 LLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNALEN--VDGVANLPRLQELL 514

Query: 108 LAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRG-----LRKLRFLD 157
           L  NRL+ S  I+ L S   L  L++  N +      +  +      L  +  + 
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE---EGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 1e-08
 Identities = 41/231 (17%), Positives = 79/231 (34%), Gaps = 17/231 (7%)

Query: 403 LPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSN 462
              L    +S       + S       L  L+  N      I   +      L+ LL   
Sbjct: 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMR----ALDPLLYEK 402

Query: 463 NSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMG 522
            +LQ     K ++  +   L+   + F+          + ++ L+++  D++  +   + 
Sbjct: 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LE 460

Query: 523 NISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLC 582
            +  +  + +  N L   +P     L  LE+L  S N +    ++G  +    L  L LC
Sbjct: 461 QLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL--ENVDG-VANLPRLQELLLC 516

Query: 583 NNRLNGNIPNWM--GRLSQLRYLILANNNFEGEVPLR---LCQLQKLRLLD 628
           NNRL              +L  L L  N+   E  ++      L  +  + 
Sbjct: 517 NNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.9 bits (134), Expect = 4e-08
 Identities = 38/267 (14%), Positives = 81/267 (30%), Gaps = 18/267 (6%)

Query: 323 PKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNII 382
            +  +           +  +       +   + + +  +L  +      R    + + + 
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSA-TDEQLF 352

Query: 383 ALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSN---NQ 439
             ++S  K    +  E+ +    L  L         +I      ++ L+Y   +    + 
Sbjct: 353 RCELSVEKST-VLQSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST 410

Query: 440 LTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSN 499
           L    P   A         L        +    K+    ++ L+L        +   L  
Sbjct: 411 LKAVDPMRAAYLDDLRSKFL-------LENSVLKMEYADVRVLHLAHKDLT--VLCHLEQ 461

Query: 500 CSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKN 559
              +  L +S N +  ++P  +  +  L+ +   DN LE         L  L+ L L  N
Sbjct: 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE--NVDGVANLPRLQELLLCNN 518

Query: 560 NIAGRPLNGAFSKCSYLLTLDLCNNRL 586
            +           C  L+ L+L  N L
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.2 bits (127), Expect = 3e-07
 Identities = 41/285 (14%), Positives = 84/285 (29%), Gaps = 42/285 (14%)

Query: 499 NCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSK 558
           + + L   + + +  +     W+ +   L A  + D   +      +   D  +   L K
Sbjct: 279 DEAPLSVEWRTPDGRNRPSHVWLCD---LPAASLNDQLPQHTFRVIWTGSDSQKECVLLK 335

Query: 559 NNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRL 618
           +       +   +    L   +L   +    + + +    +L+ L   N      + L +
Sbjct: 336 DRPECWCRD--SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM 392

Query: 619 CQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEK 678
             L  L     +   FS                    + P      D +           
Sbjct: 393 RALDPLLYEKETLQYFSTLK----------------AVDPMRAAYLDDLRSKFLLENSVL 436

Query: 679 ETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTI 738
           +      +                L L+   L   +   + +L+ +  L+LS N L   +
Sbjct: 437 KMEYADVRV---------------LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-AL 478

Query: 739 PVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
           P   + LR +E L  S N L   +   +  L  L    + +N L 
Sbjct: 479 PPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ 521

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 23/167 (13%)

Query: 53  SLDLSGNNIAGCVENEGLEK-LSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYN 111
            L      I      E ++  LS L   K L LS N+     +SSL+G+ +L+ LSL  N
Sbjct: 29  ELHGMIPPI------EKMDATLSTLKACKHLALSTNNI--EKISSLSGMENLRILSLGRN 80

Query: 112 RLEGSINIEELDSLSN-LEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVL 170
            ++    IE LD++++ LE L +S N+I +L        L  LR L +S  +I +  ++ 
Sbjct: 81  LIK---KIENLDAVADTLEELWISYNQIASL---SGIEKLVNLRVLYMSNNKITNWGEID 134

Query: 171 HSIGSFPSLKTLYLKSNNFAKTVTTTQGLCE-----LAHLQEL-YID 211
             + +   L+ L L  N             E     +  L  L  +D
Sbjct: 135 K-LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 73.2 bits (180), Expect = 7e-15
 Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 20/144 (13%)

Query: 48  FQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLS-SLKNL 106
            +  + L LS NNI      E +  LSG+ NL+ L L  N      + +L  ++ +L+ L
Sbjct: 47  LKACKHLALSTNNI------EKISSLSGMENLRILSLGRNLI--KKIENLDAVADTLEEL 98

Query: 107 SLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDG 166
            ++YN++    ++  ++ L NL  L MS+N+I N         L KL  L L+G  + + 
Sbjct: 99  WISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155

Query: 167 SKVLHS--------IGSFPSLKTL 182
            K  ++        +   P+LK L
Sbjct: 156 YKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 16/118 (13%)

Query: 49  QQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSL 108
           + L  L L  N I      E L+ ++    L+ L +S+N    + LS +  L +L+ L +
Sbjct: 70  ENLRILSLGRNLIKKI---ENLDAVAD--TLEELWISYNQI--ASLSGIEKLVNLRVLYM 122

Query: 109 AYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVP----KDYRG-----LRKLRFLD 157
           + N++     I++L +L  LE L ++ N + N         +YR      L  L+ LD
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 17/144 (11%)

Query: 106 LSLAYNRLEGSINIEE-LDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIR 164
           L      +E    ++  L +L   + L +S N I+ +       G+  LR L L    I 
Sbjct: 30  LHGMIPPIE---KMDATLSTLKACKHLALSTNNIEKI---SSLSGMENLRILSLGRNLI- 82

Query: 165 DGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP--WC 222
              K+ +      +L+ L++  N     + +  G+ +L +L+ LY+ +N  I +      
Sbjct: 83  --KKIENLDAVADTLEELWISYNQ----IASLSGIEKLVNLRVLYMSNN-KITNWGEIDK 135

Query: 223 LANLTSLRVLHVPDNQLTENLSSS 246
           LA L  L  L +  N L  +   +
Sbjct: 136 LAALDKLEDLLLAGNPLYNDYKEN 159

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 37/184 (20%), Positives = 69/184 (37%), Gaps = 39/184 (21%)

Query: 473 KINLTKLKRLNLDGNH-FIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAII 531
            +  T+ +++ L G    I  +  +LS   + + L +S N+I          IS L    
Sbjct: 19  SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE--------KISSLS--- 67

Query: 532 MPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP 591
                           ++ L IL L +N I  + +    +    L  L +  N++  ++ 
Sbjct: 68  ---------------GMENLRILSLGRNLI--KKIENLDAVADTLEELWISYNQIA-SLS 109

Query: 592 NWMGRLSQLRYLILANNNFEGEVPL-RLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHRE 650
             + +L  LR L ++NN       + +L  L KL  L L+ N       P  ++   +  
Sbjct: 110 G-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-------PLYNDYKENNA 161

Query: 651 EGYY 654
              Y
Sbjct: 162 TSEY 165

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.5 bits (134), Expect = 9e-09
 Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 15/149 (10%)

Query: 117 INIEELDSLSNLE--GLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIG 174
               +    +  E   L      I+ +        L+  + L LS   I      + S+ 
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKM--DATLSTLKACKHLALSTNNIEK----ISSLS 67

Query: 175 SFPSLKTLYLKSNNFAKTVTTTQGLCELA-HLQELYIDHNDFIGSLPWCLANLTSLRVLH 233
              +L+ L L  N         + L  +A  L+EL+I +N  I SL   +  L +LRVL+
Sbjct: 68  GMENLRILSLGRNLI----KKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRVLY 121

Query: 234 VPDNQLTENLSSSPLMHLTSIELLILSNN 262
           + +N++T       L  L  +E L+L+ N
Sbjct: 122 MSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 9/138 (6%)

Query: 152 KLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYID 211
           +   ++L    I    K+  ++ +  + K L L +NN  K       L  + +L+ L + 
Sbjct: 24  EAEKVELH-GMIPPIEKMDATLSTLKACKHLALSTNNIEKI----SSLSGMENLRILSLG 78

Query: 212 HNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLE 271
            N  I  +    A   +L  L +  NQ+    S S +  L ++ +L +SNN       ++
Sbjct: 79  RNL-IKKIENLDAVADTLEELWISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEID 134

Query: 272 PFFNYSKLKIFHGRENQI 289
                 KL+      N +
Sbjct: 135 KLAALDKLEDLLLAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 16/100 (16%)

Query: 420 IPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKI----- 474
           + ++   + +  +L LS N +  +I   L+ G  NL  L L  N +      KKI     
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLS-GMENLRILSLGRNLI------KKIENLDA 90

Query: 475 NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDIS 514
               L+ L +  N  I  +   +    +L+ LY+S+N I+
Sbjct: 91  VADTLEELWISYNQ-IASL-SGIEKLVNLRVLYMSNNKIT 128

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 75.3 bits (185), Expect = 1e-14
 Identities = 48/172 (27%), Positives = 70/172 (40%), Gaps = 20/172 (11%)

Query: 356 NLRSIILANNSLSG-PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFN 414
               +  +   L   P  LP+ +      LD+S+N L           L NL  L +S N
Sbjct: 19  ASNILSCSKQQLPNVPQSLPSYTAL----LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN 74

Query: 415 AFNGSIPS-SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLF 470
             N  I S +F  + +L YLDLS+N L   + E L      LE LLL NN    +    F
Sbjct: 75  HLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAF 132

Query: 471 SKKINLTKLKRLNLDGNHFIGGIPE----SLSNCSSLQGLYISDNDISGSIP 518
               ++ +L++L L  N  I   P       +    L  L +S N +   +P
Sbjct: 133 E---DMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLP 179

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 72.6 bits (178), Expect = 1e-13
 Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 14/171 (8%)

Query: 77  SNLKFLDLSHNSFNN-SVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSD 135
           S    LDLSHN+ +      +   L++L +L L++N L   I+ E    + NL  LD+S 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 136 NEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTLYLKSNNFAKT 192
           N +  L     +  L+ L  L L    I     V+    +F     L+ LYL  N  ++ 
Sbjct: 98  NHLHTLD-EFLFSDLQALEVLLLYNNHI----VVVDR-NAFEDMAQLQKLYLSQNQISRF 151

Query: 193 VTTT-QGLCELAHLQELYIDHNDFIGSLPWCLANLTSL--RVLHVPDNQLT 240
                +   +L  L  L +  N         L  L +     L++ +N L 
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.6 bits (173), Expect = 4e-13
 Identities = 52/226 (23%), Positives = 83/226 (36%), Gaps = 39/226 (17%)

Query: 432 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ---GQLFSKKINLTKLKRLNLDGNH 488
            LDLS+N L+    E       NL  LLLS+N L     + F     +  L+ L+L  NH
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV---PVPNLRYLDLSSNH 99

Query: 489 FIGGIP-ESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQ 547
            +  +     S+  +L+ L + +N I   +                         + F  
Sbjct: 100 -LHTLDEFLFSDLQALEVLLLYNNHIV-VVD-----------------------RNAFED 134

Query: 548 LDYLEILDLSKNNIAGRPLNGAFSKCSY---LLTLDLCNNRLNGNIPNWMGRLSQL--RY 602
           +  L+ L LS+N I+  P        +    L+ LDL +N+L       + +L       
Sbjct: 135 MAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

Query: 603 LILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLH 648
           L L NN  E +  L        +   LS      +   C+ +  LH
Sbjct: 194 LYLHNNPLECDCKLYQ-LFSHWQYRQLSSVMDFQEDLYCMHSKKLH 238

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.3 bits (172), Expect = 6e-13
 Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 27/199 (13%)

Query: 7   SDC-CQWQSVLCNATTSRVIAIDL--------LSLNIASALYLNFSLFTPFQQLESLDLS 57
           ++C C    + C+      +   L        LS N  S L   ++  T    L SL LS
Sbjct: 14  ANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWT-PTRLTNLHSLLLS 72

Query: 58  GNNIAGCVENEGLEK--LSGLSNLKFLDLSHN---SFNNSVLSSLAGLSSLKNLSLAYNR 112
            N++        +       + NL++LDLS N   + +  + S    L +L+ L L  N 
Sbjct: 73  HNHL------NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS---DLQALEVLLLYNNH 123

Query: 113 LEGSINIEELDSLSNLEGLDMSDNEIDNLV--VPKDYRGLRKLRFLDLSGLRIRDGSKVL 170
           +   ++    + ++ L+ L +S N+I      + KD   L KL  LDLS  +++      
Sbjct: 124 IV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182

Query: 171 HSIGSFPSLKTLYLKSNNF 189
                      LYL +N  
Sbjct: 183 LQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 14/146 (9%)

Query: 126 SNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTL 182
           S    LD+S N +  L        L  L  L LS   +      + S  +F   P+L+ L
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN----FISS-EAFVPVPNLRYL 93

Query: 183 YLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPW-CLANLTSLRVLHVPDNQLT- 240
            L SN+            +L  L+ L + +N  I  +      ++  L+ L++  NQ++ 
Sbjct: 94  DLSSNHL--HTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISR 150

Query: 241 -ENLSSSPLMHLTSIELLILSNNHFQ 265
                      L  + LL LS+N  +
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 50/227 (22%), Positives = 73/227 (32%), Gaps = 59/227 (25%)

Query: 433 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ----GQLFSKKINLTKLKRLNLDGNH 488
           L  S  QL   +P+ L         L LS+N+L         +    LT L  L L  NH
Sbjct: 23  LSCSKQQLP-NVPQSLPS---YTALLDLSHNNLSRLRAEWTPT---RLTNLHSLLLSHNH 75

Query: 489 FIGGIPE-SLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQ 547
            +  I   +     +L+ L +S N +  ++                           F  
Sbjct: 76  -LNFISSEAFVPVPNLRYLDLSSNHLH-TLD-----------------------EFLFSD 110

Query: 548 LDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILAN 607
           L  LE+L L  N+I       AF   + L  L L  N+++   P  +             
Sbjct: 111 LQALEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQIS-RFPVEL------------- 155

Query: 608 NNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYY 654
              +        +L KL LLDLS N         L       + G Y
Sbjct: 156 --IKD-----GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 11/120 (9%)

Query: 697 LESIHGLDLSCNKLIGEIPSRI-GELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSY 755
           + ++  LDLS N L   +   +  +L  +  L L  N++       F ++ Q++ L LS 
Sbjct: 87  VPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145

Query: 756 NNLTGKIPPR----LVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSY---EGNPFLC 808
           N ++ + P        +L  L +  ++ N L  K+P    Q       +      NP  C
Sbjct: 146 NQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLEC 203

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 703 LDLSCNKLIGEIPSRI--GELIRIHTLNLSRNNLTGTIPV-TFSNLRQVESLDLSYNNLT 759
           LDLS N  +  + +      L  +H+L LS N+L   I    F  +  +  LDLS N+L 
Sbjct: 44  LDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 760 GKIPPR-LVELNALAVFTVAHNNLS 783
             +      +L AL V  + +N++ 
Sbjct: 102 -TLDEFLFSDLQALEVLLLYNNHIV 125

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 74.4 bits (183), Expect = 3e-14
 Identities = 47/273 (17%), Positives = 90/273 (32%), Gaps = 52/273 (19%)

Query: 34  IASALYLNFSLFTPFQQLESLDLSGNNI--AGCVENEGL-EKLSGLSNLKFLDLSHNSFN 90
           + + L  +         ++ + LSGN I          L E ++   +L+  + S     
Sbjct: 24  VFAVLLED-------DSVKEIVLSGNTIGTEAA---RWLSENIASKKDLEIAEFSDIFTG 73

Query: 91  N----------SVLSSLAGLSSLKNLSLAYNRL--EGSINIEE-LDSLSNLEGLDMSDNE 137
                       +L +L     L  + L+ N         + + L   + LE L + +N 
Sbjct: 74  RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133

Query: 138 I------------DNLVVPKDYRGLRKLRFLDLSGLRIRD-GSKVL-HSIGSFPSLKTLY 183
           +              L V K  +    LR +     R+ +   K    +  S   L T+ 
Sbjct: 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 193

Query: 184 LKSNNF-AKTVTT--TQGLCELAHLQELYIDHNDF----IGSLPWCLANLTSLRVLHVPD 236
           +  N    + +     +GL     L+ L +  N F      +L   L +  +LR L + D
Sbjct: 194 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253

Query: 237 NQLT----ENLSSS-PLMHLTSIELLILSNNHF 264
             L+      +  +   +    ++ L L  N  
Sbjct: 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 71.3 bits (175), Expect = 3e-13
 Identities = 47/259 (18%), Positives = 81/259 (31%), Gaps = 50/259 (19%)

Query: 426 DMNSLIYLDLSNNQLTGEIPEHLAMG---CFNLEYLLLSNNSLQGQLFSKK--------- 473
           + +S+  + LS N +  E    L+       +LE    S+    G++  +          
Sbjct: 30  EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT-GRVKDEIPEALRLLLQ 88

Query: 474 --INLTKLKRLNLDGNHF----IGGIPESLSNCSSLQGLYISDNDIS------------- 514
             +   KL  + L  N F       + + LS  + L+ LY+ +N +              
Sbjct: 89  ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148

Query: 515 GSIPTWMGNISFLDAIIMPDNHLEGP----IPSEFCQLDYLEILDLSKNNI----AGRPL 566
            ++     N   L +II   N LE          F     L  + + +N I        L
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208

Query: 567 NGAFSKCSYLLTLDLCNNRLNGN----IPNWMGRLSQLRYLILANNNFEGE------VPL 616
               + C  L  LDL +N         +   +     LR L L +               
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268

Query: 617 RLCQLQKLRLLDLSHNNFS 635
              +   L+ L L +N   
Sbjct: 269 SKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 70.9 bits (174), Expect = 4e-13
 Identities = 59/328 (17%), Positives = 98/328 (29%), Gaps = 82/328 (25%)

Query: 351 LENNTNLRSIILANNSLS--GPFRLPT--RSRKNIIALDISYNKLQGHIPVEIGKVLPNL 406
           L  + +++ I+L+ N++       L     S+K++   + S     G +  EI + L  L
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT-GRVKDEIPEALRLL 86

Query: 407 GFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMG---CFNLEYLLLSNN 463
                           +      L  + LS+N       E L         LE+L L NN
Sbjct: 87  L--------------QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132

Query: 464 SL-------------QGQLFSKKINLTKLKRLNLDGNHF----IGGIPESLSNCSSLQGL 506
            L             +  +  K  N   L+ +    N      +    ++  +   L  +
Sbjct: 133 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192

Query: 507 YISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI---AG 563
            +  N I        G    L   +     L+              +LDL  N       
Sbjct: 193 KMVQNGIRPE-----GIEHLLLEGLAYCQELK--------------VLDLQDNTFTHLGS 233

Query: 564 RPLNGAFSKCSYLLTLDLCNNRLN-----------GNIPNWMGRLSQLRYLILANNNFEG 612
             L  A      L  L L +  L+             + N       L+ L L  N  E 
Sbjct: 234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN-----IGLQTLRLQYNEIEL 288

Query: 613 EVPLRLCQ-----LQKLRLLDLSHNNFS 635
           +    L       +  L  L+L+ N FS
Sbjct: 289 DAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 51/328 (15%), Positives = 97/328 (29%), Gaps = 65/328 (19%)

Query: 306 LTSISLSDH--GDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWL---LENNTNLRSI 360
           +   SL        D  ++   L     ++ +++S   +  E   WL   + +  +L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 361 ILANNSLSGPFRLPT----------RSRKNIIALDISYNKLQGHIPVEIGKVL---PNLG 407
             ++                          +  + +S N         +   L     L 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 408 FLTISFNAF-------------NGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMG--- 451
            L +  N                 ++     +   L  +    N+L     +  A     
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 452 CFNLEYLLLSNNSLQGQLFSKKI-----NLTKLKRLNLDGNHF----IGGIPESLSNCSS 502
              L  + +  N ++ +     +        +LK L+L  N F       +  +L +  +
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245

Query: 503 LQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI- 561
           L+ L ++D  +S       G  + +DA    +N               L+ L L  N I 
Sbjct: 246 LRELGLNDCLLSAR-----GAAAVVDAFSKLENI-------------GLQTLRLQYNEIE 287

Query: 562 --AGRPLNGAF-SKCSYLLTLDLCNNRL 586
             A R L      K   LL L+L  NR 
Sbjct: 288 LDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 37/253 (14%), Positives = 79/253 (31%), Gaps = 50/253 (19%)

Query: 429 SLIYLDLSNNQLTGEIPEHLA---MGCFNLEYLLLSNNSLQGQLFSKKI-----NLTKLK 480
           S+    L  + +T E  + +    +   +++ ++LS N++ G   ++ +     +   L+
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI-GTEAARWLSENIASKKDLE 63

Query: 481 RLNLDGNHFIGGIP-----------ESLSNCSSLQGLYISDNDIS-------GSIPTWMG 522
                   F G +            ++L  C  L  + +SDN              +   
Sbjct: 64  IAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 523 NISFLD----------AIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI---AGRPLNGA 569
            +  L              +     E  +  +      L  +   +N +   + +     
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 570 FSKCSYLLTLDLCNNRLN-----GNIPNWMGRLSQLRYLILANNNF--EGEVPLR--LCQ 620
           F     L T+ +  N +        +   +    +L+ L L +N F   G   L   L  
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 621 LQKLRLLDLSHNN 633
              LR L L+   
Sbjct: 243 WPNLRELGLNDCL 255

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 35/200 (17%), Positives = 58/200 (29%), Gaps = 35/200 (17%)

Query: 350 LLENNTNLRSIILANNSLS-------------GPFRLPTRSRKNIIALDISYNKLQGHIP 396
            L  +T L  + L NN L                     ++   + ++    N+L+    
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176

Query: 397 VEIGKVLPNLGFLT---ISFNAFN-----GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHL 448
            E  K   +   L    +  N          +         L  LDL +N  T      L
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236

Query: 449 AMG---CFNLEYLLLSNNSLQ---GQLFS---KKINLTKLKRLNLDGNHF----IGGIPE 495
           A+      NL  L L++  L             K+    L+ L L  N      +  +  
Sbjct: 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296

Query: 496 SL-SNCSSLQGLYISDNDIS 514
            +      L  L ++ N  S
Sbjct: 297 VIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 52/379 (13%), Positives = 97/379 (25%), Gaps = 111/379 (29%)

Query: 153 LRFLDLSGLRI--RDGSKVLHSIGSFPSLKTLYLKSNNF----AKTVTTTQGLCELAHLQ 206
           +    L    I   D   V   +    S+K + L  N      A+ +  ++ +     L+
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWL--SENIASKKDLE 63

Query: 207 ELYIDHNDFIGSLPW-----------CLANLTSLRVLHVPDNQLTEN----LSSSPLMHL 251
                   F G +              L     L  + + DN         L    L   
Sbjct: 64  IAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF-LSKH 121

Query: 252 TSIELLILSNNHF------QIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQ 305
           T +E L L NN        +I  +L+      K K                         
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAK---------------------NAPP 160

Query: 306 LTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANN 365
           L SI    +   +G                  +             +++  L ++ +  N
Sbjct: 161 LRSIICGRNRLENGSM-------------KEWAKT----------FQSHRLLHTVKMVQN 197

Query: 366 SL-----SGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSI 420
            +                + +  LD+  N         +   L +               
Sbjct: 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW-------------- 243

Query: 421 PSSFGDMNSLIYLDLSNNQLTGE----IPEHLAMGCF-NLEYLLLSNNSLQ---GQLFSK 472
                   +L  L L++  L+      + +  +      L+ L L  N ++    +    
Sbjct: 244 -------PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296

Query: 473 --KINLTKLKRLNLDGNHF 489
                +  L  L L+GN F
Sbjct: 297 VIDEKMPDLLFLELNGNRF 315

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.4 bits (178), Expect = 6e-14
 Identities = 48/198 (24%), Positives = 74/198 (37%), Gaps = 32/198 (16%)

Query: 30  LSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSF 89
           L L+       + +   P+ +L  L+L    +        L+    L  L  LDLSHN  
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT------KLQVDGTLPVLGTLDLSHNQL 89

Query: 90  NNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKD-YR 148
             S+      L +L  L +++NRL  S+ +  L  L  L+ L +  NE+  L  P     
Sbjct: 90  -QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTL--PPGLLT 145

Query: 149 GLRKLRFLDLSGLRIRDGSKVLHSI--GSF---PSLKTLYLKSNNFAKTVTTTQGLCELA 203
              KL  L L+          L  +  G      +L TL L+ N+     T  +G     
Sbjct: 146 PTPKLEKLSLANNN-------LTELPAGLLNGLENLDTLLLQENSLY---TIPKGFFGSH 195

Query: 204 HLQELYIDHNDFIGSLPW 221
            L   ++  N      PW
Sbjct: 196 LLPFAFLHGN------PW 207

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.1 bits (177), Expect = 7e-14
 Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 14/168 (8%)

Query: 355 TNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFN 414
            +   + L+ N L             +  L++   +L   + V+    LP LG L +S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGT--LPVLGTLDLSHN 87

Query: 415 AFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFS 471
               S+P     + +L  LD+S N+LT  +P     G   L+ L L  N   +L   L +
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 472 KKINLTKLKRLNLDGNHFIGGIPESL-SNCSSLQGLYISDNDISGSIP 518
                 KL++L+L  N+ +  +P  L +   +L  L + +N +  +IP
Sbjct: 146 P---TPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLY-TIP 188

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 19/195 (9%)

Query: 74  SGLSNLKFLDLSHNSFNNSVLSSL-AGL-SSLKNLSLAYNRLEGSINIEELDSLSNLEGL 131
           S +++   ++    +     L++L   L      L L+ N L  + ++  L   + L  L
Sbjct: 7   SKVASHLEVNCDKRN-----LTALPPDLPKDTTILHLSENLLY-TFSLATLMPYTRLTQL 60

Query: 132 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAK 191
           ++   E+  L V      L  L  LDLS  +++    +  ++   P+L  L +  N    
Sbjct: 61  NLDRAELTKLQV---DGTLPVLGTLDLSHNQLQSLPLLGQTL---PALTVLDVSFNRLTS 114

Query: 192 TVTTTQGLCELAHLQELYIDHNDFIGSLP-WCLANLTSLRVLHVPDNQLTENLSSSPLMH 250
                  L  L  LQELY+  N+ + +LP   L     L  L + +N LTE L +  L  
Sbjct: 115 LPLGA--LRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNG 170

Query: 251 LTSIELLILSNNHFQ 265
           L +++ L+L  N   
Sbjct: 171 LENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 66.7 bits (163), Expect = 4e-12
 Identities = 54/228 (23%), Positives = 79/228 (34%), Gaps = 38/228 (16%)

Query: 423 SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRL 482
               + S + ++     LT  +P  L     +   L LS N L     +  +  T+L +L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 483 NLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIP 542
           NLD    +  +         L  L +S N +                           +P
Sbjct: 61  NLDRAE-LTKLQVD-GTLPVLGTLDLSHNQLQS-------------------------LP 93

Query: 543 SEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWM-GRLSQLR 601
                L  L +LD+S N +   P  GA      L  L L  N L   +P  +     +L 
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSLP-LGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLE 151

Query: 602 YLILANNNFEGEVPLRLCQ-LQKLRLLDLSHNNFSGQIPPCL-DNTSL 647
            L LANNN   E+P  L   L+ L  L L  N+    IP     +  L
Sbjct: 152 KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLL 197

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.9 bits (161), Expect = 8e-12
 Identities = 46/202 (22%), Positives = 75/202 (37%), Gaps = 43/202 (21%)

Query: 77  SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDN 136
            +   L LS N      L++L   + L  L+L    L     ++   +L  L  LD+S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHN 87

Query: 137 EIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSI--GSF---PSLKTLYLKSNN--- 188
           ++ +L  P   + L  L  LD+S  R+        S+  G+      L+ LYLK N    
Sbjct: 88  QLQSL--PLLGQTLPALTVLDVSFNRLT-------SLPLGALRGLGELQELYLKGNELKT 138

Query: 189 -----FAKTVTTTQGLCELAHLQELYIDHNDFIGSLPW-CLANLTSLRVLHVPDNQLTEN 242
                                L++L + +N+ +  LP   L  L +L  L + +N L   
Sbjct: 139 LPPGLLTP----------TPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLY-- 185

Query: 243 LSSSP--LMHLTSIELLILSNN 262
             + P        +    L  N
Sbjct: 186 --TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.0 bits (156), Expect = 4e-11
 Identities = 42/198 (21%), Positives = 72/198 (36%), Gaps = 22/198 (11%)

Query: 96  SLAGLSSLKNLSLAYNRLEGSI--NIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKL 153
            ++ ++S   ++     L  ++  ++       +   L +S+N +             +L
Sbjct: 5   EVSKVASHLEVNCDKRNL-TALPPDL-----PKDTTILHLSENLLYTFS-LATLMPYTRL 57

Query: 154 RFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHN 213
             L+L    +      L   G+ P L TL L  N         Q L     L  L +  N
Sbjct: 58  TQLNLDRAELT----KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTL---PALTVLDVSFN 110

Query: 214 DFIGSLP-WCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQ-IPMSLE 271
             + SLP   L  L  L+ L++  N+L   L    L     +E L L+NN+   +P  L 
Sbjct: 111 R-LTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGL- 167

Query: 272 PFFNYSKLKIFHGRENQI 289
                  L     +EN +
Sbjct: 168 -LNGLENLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 42/215 (19%), Positives = 65/215 (30%), Gaps = 43/215 (20%)

Query: 227 TSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRE 286
               +LH+ +N L    S + LM  T +  L L          L+       L       
Sbjct: 31  KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSH 86

Query: 287 NQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEF 346
           NQ+   +     +L     LT + +S                            N     
Sbjct: 87  NQL-QSLPLLGQTLP---ALTVLDVSF---------------------------NRLTSL 115

Query: 347 PSWLLENNTNLRSIILANNSLSGPFRLPT---RSRKNIIALDISYNKLQGHIPVEIGKVL 403
           P   L     L+ + L  N L     LP         +  L ++ N L   +P  +   L
Sbjct: 116 PLGALRGLGELQELYLKGNELK---TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL 171

Query: 404 PNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNN 438
            NL  L +  N+   +IP  F   + L +  L  N
Sbjct: 172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 695 QPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLS 754
            P   +  L+L   +L  ++    G L  + TL+LS N L  ++P+    L  +  LD+S
Sbjct: 52  MPYTRLTQLNLDRAEL-TKLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108

Query: 755 YNNLTGKIPP----RLVELNAL 772
           +N LT  +P      L EL  L
Sbjct: 109 FNRLT-SLPLGALRGLGELQEL 129

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 50/239 (20%), Positives = 74/239 (30%), Gaps = 74/239 (30%)

Query: 579 LDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQI 638
           L L  N L       +   ++L  L L       ++ +    L  L  LDLSHN     +
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SL 92

Query: 639 PPCLDN-TSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPL 697
           P       +L                                                  
Sbjct: 93  PLLGQTLPALTV------------------------------------------------ 104

Query: 698 ESIHGLDLSCNKLIGEIPSRI-GELIRIHTLNLSRNNLTGTIPV-TFSNLRQVESLDLSY 755
                LD+S N+ +  +P      L  +  L L  N L  T+P    +   ++E L L+ 
Sbjct: 105 -----LDVSFNR-LTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157

Query: 756 NNLTGKIPPRL-VELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYE-----GNPFLC 808
           NNLT ++P  L   L  L    +  N+L   IP+       F           GNP+LC
Sbjct: 158 NNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGF-----FGSHLLPFAFLHGNPWLC 209

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 22/187 (11%)

Query: 432 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ---GQLFSKKINLTKLKRLNLDGNH 488
            LDL +N+L+  +P         L  L L++N LQ     +F +   L  L+ L +  N 
Sbjct: 41  KLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE---LKNLETLWVTDNK 96

Query: 489 FI---GGIPESLSNCSSLQGLYISDNDISGSIP----TWMGNISFLDAIIMPDNHLEGPI 541
                 G+ + L N   L  L +  N +  S+P      +  +++L    +  N L+   
Sbjct: 97  LQALPIGVFDQLVN---LAELRLDRNQLK-SLPPRVFDSLTKLTYLS---LGYNELQSLP 149

Query: 542 PSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLR 601
              F +L  L+ L L  N +   P  GAF K + L TL L NN+L          L +L+
Sbjct: 150 KGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208

Query: 602 YLILANN 608
            L L  N
Sbjct: 209 MLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 50/201 (24%), Positives = 79/201 (39%), Gaps = 37/201 (18%)

Query: 77  SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDN 136
           ++ K LDL  N  ++    +   L+ L+ L L  N+L+ ++       L NLE L ++DN
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 137 EIDNLVVPKD-YRGLRKLRFLDLSGLRIRDGSKVLHSI--GSF---PSLKTLYLKSNN-- 188
           ++  L  P   +  L  L  L L           L S+    F     L  L L  N   
Sbjct: 96  KLQAL--PIGVFDQLVNLAELRLD-------RNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146

Query: 189 ------FAKTVTTTQGLCELAHLQELYIDHNDFIGSLP-WCLANLTSLRVLHVPDNQLTE 241
                 F K          L  L+EL + +N  +  +P      LT L+ L + +NQL  
Sbjct: 147 SLPKGVFDK----------LTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLK- 194

Query: 242 NLSSSPLMHLTSIELLILSNN 262
            +       L  +++L L  N
Sbjct: 195 RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 49/191 (25%), Positives = 74/191 (38%), Gaps = 44/191 (23%)

Query: 45  FTPFQQLESLDLSGNNIAGCVENEGLEKLS-----GLSNLKFLDLSHNSFNNSVLSSL-- 97
           F    +L  L L+ N          L+ L       L NL+ L ++ N      L +L  
Sbjct: 57  FHRLTKLRLLYLNDNK---------LQTLPAGIFKELKNLETLWVTDNK-----LQALPI 102

Query: 98  ---AGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKD-YRGLRKL 153
                L +L  L L  N+L+ S+     DSL+ L  L +  NE+ +L  PK  +  L  L
Sbjct: 103 GVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSL--PKGVFDKLTSL 159

Query: 154 RFLDLSGLRIRDGSKVLHSIGSF---PSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYI 210
           + L L   +++     +   G+F     LKTL L +N              L  L+ L +
Sbjct: 160 KELRLYNNQLK----RVPE-GAFDKLTELKTLKLDNNQL--KRVPEGAFDSLEKLKMLQL 212

Query: 211 DHNDFIGSLPW 221
             N      PW
Sbjct: 213 QEN------PW 217

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 12/128 (9%)

Query: 167 SKVLHSI--GSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP-WCL 223
           SK L +I        K L L+SN  +   +       L  L+ LY++ N  + +LP    
Sbjct: 25  SKKLTAIPSNIPADTKKLDLQSNKLSSLPSKA--FHRLTKLRLLYLNDNK-LQTLPAGIF 81

Query: 224 ANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEP--FFNYSKLKI 281
             L +L  L V DN+L   L       L ++  L L  N  +   SL P  F + +KL  
Sbjct: 82  KELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLK---SLPPRVFDSLTKLTY 137

Query: 282 FHGRENQI 289
                N++
Sbjct: 138 LSLGYNEL 145

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 52/243 (21%), Positives = 80/243 (32%), Gaps = 70/243 (28%)

Query: 227 TSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEP--FFNYSKLKIFHG 284
              + L +  N+L+ +L S     LT + LL L++N  Q   +L    F     L+    
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETLWV 92

Query: 285 RENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRG 344
            +N                 +L ++                                   
Sbjct: 93  TDN-----------------KLQAL----------------------------------- 100

Query: 345 EFPSWLLENNTNLRSIILANNSLSGPFRLPTR---SRKNIIALDISYNKLQGHIPVEIGK 401
             P  + +   NL  + L  N L     LP R   S   +  L + YN+LQ  +P  +  
Sbjct: 101 --PIGVFDQLVNLAELRLDRNQLK---SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFD 154

Query: 402 VLPNLGFLTISFNAFNGSIPSS-FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLL 460
            L +L  L +  N     +P   F  +  L  L L NNQL   +PE        L+ L L
Sbjct: 155 KLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQL 212

Query: 461 SNN 463
             N
Sbjct: 213 QEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 3/100 (3%)

Query: 534 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNW 593
            N L       F +L  L +L L+ N +   P  G F +   L TL + +N+L       
Sbjct: 46  SNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWVTDNKLQALPIGV 104

Query: 594 MGRLSQLRYLILANNNFEGEVPLRLC-QLQKLRLLDLSHN 632
             +L  L  L L  N  +  +P R+   L KL  L L +N
Sbjct: 105 FDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYN 143

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 65.9 bits (161), Expect = 1e-12
 Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 14/119 (11%)

Query: 44  LFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSL 103
           L   F  LE L L    +        +  L  L  LK L+LS N     +      L +L
Sbjct: 44  LTAEFVNLEFLSLINVGL------ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 104 KNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRG-----LRKLRFLD 157
            +L+L+ N+L+    +E L  L  L+ LD+ + E+ NL    DYR      L +L +LD
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL---NDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 9/136 (6%)

Query: 100 LSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLS 159
            ++++ L L   +              NLE L + +  + ++    +   L KL+ L+LS
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELS 79

Query: 160 GLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHN---DFI 216
             RI  G  +L      P+L  L L S N  K ++T + L +L  L+ L + +    +  
Sbjct: 80  ENRIFGGLDMLAE--KLPNLTHLNL-SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

Query: 217 GSLPWCLANLTSLRVL 232
                    L  L  L
Sbjct: 137 DYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 9/137 (6%)

Query: 126 SNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLK 185
           S   G+DM       L      R    +R L L   +  DG K+      F +L+ L L 
Sbjct: 3   SGSSGMDMKRRIHLEL----RNRTPAAVRELVLDNCKSNDG-KIEGLTAEFVNLEFLSLI 57

Query: 186 SNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSS 245
           +      + +   L +L  L++L +  N   G L      L +L  L++  N+L +  + 
Sbjct: 58  NVG----LISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL 113

Query: 246 SPLMHLTSIELLILSNN 262
            PL  L  ++ L L N 
Sbjct: 114 EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%)

Query: 541 IPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQL 600
           I     +   LE L L    +    ++    K   L  L+L  NR+ G +     +L  L
Sbjct: 41  IEGLTAEFVNLEFLSLINVGLIS--VSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 601 RYLILANNNFEGEVPLR-LCQLQKLRLLDLSHN 632
            +L L+ N  +    L  L +L+ L+ LDL + 
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 433 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKI----NLTKLKRLNLDGNH 488
           L L N +      E L     NLE+L L N  L        +     L KLK+L L  N 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL------ISVSNLPKLPKLKKLELSENR 82

Query: 489 FIGGIPESLSNCSSLQGLYISDNDIS 514
             GG+        +L  L +S N + 
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 19/120 (15%), Positives = 43/120 (35%), Gaps = 9/120 (7%)

Query: 124 SLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLY 183
           + + +  L + + + ++  +         L FL L  + +      + ++   P LK L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS----VSNLPKLPKLKKLE 77

Query: 184 LKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP--WCLANLTSLRVLHVPDNQLTE 241
           L  N     +          +L  L +  N  +  +     L  L  L+ L + + ++T 
Sbjct: 78  LSENRIFGGLDMLAEKLP--NLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTN 134

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 551 LEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNF 610
           +  L L         + G  ++   L  L L N  L  ++ N + +L +L+ L L+ N  
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRI 83

Query: 611 EGEVPLRLCQLQKLRLLDLSHNNFS 635
            G + +   +L  L  L+LS N   
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 4/115 (3%)

Query: 175 SFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHV 234
           +  +++ L L  N  +          E  +L+ L + +   + S+   L  L  L+ L +
Sbjct: 22  TPAAVRELVL-DNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVS-NLPKLPKLKKLEL 78

Query: 235 PDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQI 289
            +N++           L ++  L LS N  +   +LEP      LK       ++
Sbjct: 79  SENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 70.0 bits (171), Expect = 2e-12
 Identities = 63/507 (12%), Positives = 131/507 (25%), Gaps = 51/507 (10%)

Query: 43  SLFTPFQQLESLDLSG----------NNIAGCVENEGLEKLS-GLSNLKFLDLSHNSFNN 91
            L   F  L SL L G              G      + ++S  L  LK +       ++
Sbjct: 67  RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSD 126

Query: 92  SVLSSLA--GLSSLKNLSLAYNRLEGSINIEEL-DSLSNLEGLDMSDNEIDNLV------ 142
             L  LA      L+ L L       +  +  +      ++ L M ++            
Sbjct: 127 LDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE 186

Query: 143 VPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF-PSLKTLYLKSNNFAKTVTTTQGLCE 201
           + +    L  L F      +I      L +I     SL ++ +      + V   +    
Sbjct: 187 LAQHNTSLEVLNFYMTEFAKISPKD--LETIARNCRSLVSVKVGDFEILELVGFFKAAAN 244

Query: 202 LAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSN 261
           L       ++ +  +      L     L  L +  + +  N           I  L L  
Sbjct: 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL--SYMGPNEMPILFPFAAQIRKLDLLY 302

Query: 262 NHFQIPMSLEPFFNYSKLKIFHGR---ENQIFGEIESSHSSLT-----PKFQLTSISLSD 313
              +             L++   R    ++    +      L             +   +
Sbjct: 303 ALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362

Query: 314 HGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILAN--------- 364
              S  G +         LE++ +   ++  E    +     NL    L           
Sbjct: 363 GLVSQRG-LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421

Query: 365 NSLSGPFRLPTRSRKNIIALDISYN--KLQGHIPVEIGKVLPNLGFLTISFNAF-NGSIP 421
             L    R      K +           L       IG+  PN+ ++ + +    +  + 
Sbjct: 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481

Query: 422 SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ---GQLFSKKINLTK 478
                  +L  L++     +            +L YL +           L         
Sbjct: 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWN 541

Query: 479 LKRLNLDGNHFIG--GIPESLSNCSSL 503
           ++ +       +   G    + + + +
Sbjct: 542 IELIPSRRVPEVNQQGEIREMEHPAHI 568

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 65.7 bits (160), Expect = 4e-11
 Identities = 75/502 (14%), Positives = 157/502 (31%), Gaps = 79/502 (15%)

Query: 148 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKS-NNFAKTVTTTQGLCELA--- 203
             LR+L+ +    + + D      +      L+TL L   + F     TT GL  +    
Sbjct: 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF-----TTDGLLSIVTHC 163

Query: 204 -HLQELYIDHNDF-------IGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIE 255
             ++ L ++ + F       +  L     +L  L        +++     +   +  S+ 
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223

Query: 256 LLILSNNHFQIPMSLEPFFNYSK-LKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDH 314
            + + +      + L  FF  +  L+ F G        +   + +L    +L  + LS  
Sbjct: 224 SVKVGDFEI---LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM 280

Query: 315 GDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANN-SLSGPFRL 373
           G ++   +P        +  + +    +  E    L++   NL  +   N     G   L
Sbjct: 281 GPNE---MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL 337

Query: 374 PTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYL 433
             +  K +  L I     +  +  E G V    G + ++                 L Y+
Sbjct: 338 -AQYCKQLKRLRIERGADEQGMEDEEGLV-SQRGLIALAQGCQE------------LEYM 383

Query: 434 DLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGI 493
            +  + +T E  E +     NL    L                 ++  L LD      G+
Sbjct: 384 AVYVSDITNESLESIGTYLKNLCDFRLVLLD----------REERITDLPLDN-----GV 428

Query: 494 PESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEI 553
              L  C  L+                 G ++  D  +   +++      ++     +  
Sbjct: 429 RSLLIGCKKLRRFAFYLRQ---------GGLT--DLGL---SYI-----GQYSPN--VRW 467

Query: 554 LDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRL-NGNIPNWMGRLSQLRYLILANNN--F 610
           + L     +   L      C  L  L++         I   + +L  LRYL +       
Sbjct: 468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527

Query: 611 EGEVPLRLCQ-LQKLRLLDLSH 631
            G+  +++ +    + L+    
Sbjct: 528 TGQDLMQMARPYWNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.9 bits (132), Expect = 9e-08
 Identities = 56/362 (15%), Positives = 110/362 (30%), Gaps = 52/362 (14%)

Query: 302 PKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRG---EFPSWLLENNTNLR 358
            K +   +  S   + DG  + +   H   LE +            +    +  N  +L 
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223

Query: 359 SIILANNSLSGPFRLPTRSRK----NIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFN 414
           S+ + +  +         +         +L+      + ++ +   + L  LG   +  N
Sbjct: 224 SVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN 283

Query: 415 AFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKI 474
                +P  F     +  LDL    L  E    L   C NLE L   N      L     
Sbjct: 284 ----EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ 339

Query: 475 NLTKLKRLNLDGNHFIGGIPESLS------------NCSSLQGLYISDNDISGSIPTWMG 522
              +LKRL ++      G+ +                C  L+ + +  +DI+        
Sbjct: 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT-------- 391

Query: 523 NISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSK-NNIAGRPLNGAF----SKCSYLL 577
                +  +         I +    L    ++ L +   I   PL+         C  L 
Sbjct: 392 -----NESLES-------IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439

Query: 578 TLDL--CNNRLNGNIPNWMGRL-SQLRYLILANNNFEGEVPLRLCQ-LQKLRLLDLSHNN 633
                     L     +++G+    +R+++L       E  +   +    L+ L++    
Sbjct: 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499

Query: 634 FS 635
           FS
Sbjct: 500 FS 501

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 52.3 bits (125), Expect = 6e-07
 Identities = 53/350 (15%), Positives = 100/350 (28%), Gaps = 63/350 (18%)

Query: 348 SWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISY--------------NKLQG 393
            W   ++     + +A    + P RL  R   N+ +L +                     
Sbjct: 43  RWFKIDSETREHVTMALCYTATPDRLSRRFP-NLRSLKLKGKPRAAMFNLIPENWGGYVT 101

Query: 394 HIPVEIGKVLPNLGFLTISFNAF--NGSIPSSFGDMNSLIYLDLSN-NQLTGEIPEHLAM 450
               EI   L  L  +               +    + L  L L   +  T +    +  
Sbjct: 102 PWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVT 161

Query: 451 GCFNLEYLLLSNNSLQ----GQLFSKKINLTKLKRLNLDGNHFIG----GIPESLSNCSS 502
            C  ++ LL+  +S        L     + T L+ LN     F       +     NC S
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221

Query: 503 LQGLYISDNDISGSIPTWM--------GNISFLDAIIMPDNHLEGPIPSEFCQLDY---- 550
           L  + + D +I   +  +            S  + I MP+ ++    P + C+L      
Sbjct: 222 LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG 281

Query: 551 -------------LEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRL 597
                        +  LDL    +          KC  L  L+  N   +  +       
Sbjct: 282 PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC 341

Query: 598 SQLRYLILANNNFEGEVPLRLCQL------------QKLRLLDLSHNNFS 635
            QL+ L +     E  +      +            Q+L  + +  ++ +
Sbjct: 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT 391

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 14/119 (11%)

Query: 44  LFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSL 103
           L     Q +++D S N I        L+    L  LK L +++N            L  L
Sbjct: 37  LGATLDQFDAIDFSDNEI------RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 104 KNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRG-----LRKLRFLD 157
             L L  N L    +++ L SL +L  L +  N + N    K YR      + ++R LD
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK---KHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 65.1 bits (159), Expect = 3e-12
 Identities = 27/111 (24%), Positives = 40/111 (36%), Gaps = 8/111 (7%)

Query: 50  QLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLA 109
           +   LDL G  I      E L     L     +D S N      L     L  LK L + 
Sbjct: 20  RDRELDLRGYKIP---VIENLGAT--LDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVN 72

Query: 110 YNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSG 160
            NR+   I      +L +L  L +++N +  L        L+ L +L +  
Sbjct: 73  NNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 14/139 (10%)

Query: 54  LDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSL-AGLSSLKNLSLAYNR 112
           + L+   I      E   + +     + LDL        V+ +L A L     +  + N 
Sbjct: 2   VKLTAELI------EQAAQYTNAVRDRELDLRGY--KIPVIENLGATLDQFDAIDFSDNE 53

Query: 113 LEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHS 172
           +     ++    L  L+ L +++N I  +      + L  L  L L+   + +    L  
Sbjct: 54  IR---KLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELILTNNSLVE-LGDLDP 108

Query: 173 IGSFPSLKTLYLKSNNFAK 191
           + S  SL  L +  N    
Sbjct: 109 LASLKSLTYLCILRNPVTN 127

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 35/140 (25%), Positives = 48/140 (34%), Gaps = 31/140 (22%)

Query: 495 ESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEIL 554
              +N    + L +    I          I  L A                  LD  + +
Sbjct: 13  AQYTNAVRDRELDLRGYKIP--------VIENLGA-----------------TLDQFDAI 47

Query: 555 DLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE--G 612
           D S N I  R L+G F     L TL + NNR+          L  L  LIL NN+    G
Sbjct: 48  DFSDNEI--RKLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 104

Query: 613 EVPLRLCQLQKLRLLDLSHN 632
           ++   L  L+ L  L +  N
Sbjct: 105 DL-DPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 7/116 (6%)

Query: 147 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQ 206
           Y    + R LDL G +I     +  +         +    N     +    G   L  L+
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGAT---LDQFDAIDFSDNE----IRKLDGFPLLRRLK 67

Query: 207 ELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNN 262
            L +++N            L  L  L + +N L E     PL  L S+  L +  N
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 29/129 (22%), Positives = 44/129 (34%), Gaps = 17/129 (13%)

Query: 118 NIEELDSLSNLEGLDMSDN---EIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIG 174
              +  +      LD+       I+NL        L +   +D S   IR     L    
Sbjct: 11  QAAQYTNAVRDRELDLRGYKIPVIENLG-----ATLDQFDAIDFSDNEIRK----LDGFP 61

Query: 175 SFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP--WCLANLTSLRVL 232
               LKTL + +N   +             L EL + +N  +  L     LA+L SL  L
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALP--DLTELILTNN-SLVELGDLDPLASLKSLTYL 118

Query: 233 HVPDNQLTE 241
            +  N +T 
Sbjct: 119 CILRNPVTN 127

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 12/97 (12%)

Query: 422 SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKI----NLT 477
           + + +      LDL   ++   I E+L       + +  S+N +      +K+     L 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEI------RKLDGFPLLR 64

Query: 478 KLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDIS 514
           +LK L ++ N               L  L +++N + 
Sbjct: 65  RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 543 SEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRY 602
           +++        LDL    I    +    +       +D  +N +   +  +   L +L+ 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIR-KLDGF-PLLRRLKT 68

Query: 603 LILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635
           L++ NN            L  L  L L++N+  
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 8/105 (7%)

Query: 178 SLKTLYLKSNNFAKTVTTTQGLCE-LAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPD 236
             + L L+       +   + L   L     +    N+ I  L      L  L+ L V +
Sbjct: 20  RDRELDLRGYK----IPVIENLGATLDQFDAIDFSDNE-IRKLD-GFPLLRRLKTLLVNN 73

Query: 237 NQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKI 281
           N++   +       L  +  LIL+NN       L+P  +   L  
Sbjct: 74  NRICR-IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 117

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 8/115 (6%)

Query: 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLT 410
             N    R + L    +     L   +     A+D S N+++    ++   +L  L  L 
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLL 70

Query: 411 ISFNAFNGSIPSSFGDMNSLIYLDLSNNQLT--GEIPEHLAMGCFNLEYLLLSNN 463
           ++ N            +  L  L L+NN L   G++ + LA    +L YL +  N
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLA-SLKSLTYLCILRN 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.9 bits (170), Expect = 3e-12
 Identities = 122/726 (16%), Positives = 218/726 (30%), Gaps = 232/726 (31%)

Query: 122 LDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKT 181
            D   ++    +S  EID++++ KD      LR      L  +    V   +     L+ 
Sbjct: 39  QDMPKSI----LSKEEIDHIIMSKD-AVSGTLRLFWT--LLSKQEEMVQKFVEE--VLRI 89

Query: 182 LYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTE 241
            Y     F  +   T+   + + +  +YI+  D + +              +V   Q   
Sbjct: 90  NY----KFLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDN------QVFAKYNVSRLQPYL 138

Query: 242 NLSSSPLMHLTSIELLILSNNHFQIPM--------SLEPFFNYSKLKIFHGRENQIF--- 290
            L  + L+ L   + +++        +        +L+   +Y         + +IF   
Sbjct: 139 KLRQA-LLELRPAKNVLI---D---GVLGSGKTWVALDVCLSYKVQCKM---DFKIFWLN 188

Query: 291 -GEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSW 349
                S  + L     L                   L +Q      I  +   R +  S 
Sbjct: 189 LKNCNSPETVLE---MLQK-----------------LLYQ------IDPNWTSRSDHSS- 221

Query: 350 LLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFL 409
                    +I L  +S+    R   +S+     L +  N       V+  K        
Sbjct: 222 ---------NIKLRIHSIQAELRRLLKSKPYENCLLVLLN-------VQNAKAW------ 259

Query: 410 TISFNAFNGS----IPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSL 465
               NAFN S    + +        +   LS    T    +H +M     + +       
Sbjct: 260 ----NAFNLSCKILLTTR----FKQVTDFLSAATTTHISLDHHSMT-LTPDEVK------ 304

Query: 466 QGQLFSKKINL--TKLKRLNLDGNHF-IGGIPESLSNCSSLQGLYISDNDISGSIPTW-M 521
              L  K ++     L R  L  N   +  I ES+ +     GL   DN        W  
Sbjct: 305 --SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD-----GLATWDN--------WKH 349

Query: 522 GNISFLDAII-MPDNHLEGPIPSEFCQL-DYLEILDLSKNNIAGRPLNGAFSKCSYLLTL 579
            N   L  II    N LE   P+E+ ++ D L +                F         
Sbjct: 350 VNCDKLTTIIESSLNVLE---PAEYRKMFDRLSV----------------FPP------- 383

Query: 580 DLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIP 639
                  + +IP     LS     ++  +  + +V + + +L K  L++      +  IP
Sbjct: 384 -------SAHIP--TILLS-----LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 640 --------PCLDNTSLHRE--EGY--------YDLIPTYRNEYDIVSYNVGPSMGEKETI 681
                      +  +LHR   + Y         DLIP Y ++Y   S+ +G  +   E  
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY-FYSH-IGHHLKNIEHP 487

Query: 682 D-FTTKERSYTYKGQPLESIHGLDLS--CNKLIGEIPSRIGELIRIHTLNLSRNNLTGTI 738
           +  T     +            LD      K+  +  +                N +G+I
Sbjct: 488 ERMTLFRMVF------------LDFRFLEQKIRHDSTAW---------------NASGSI 520

Query: 739 PVTFSNLRQVESLDLSYNN-LTGKIPPRLVELNALAVF--TVAHNNLSGKIPERIAQFAT 795
             T   L+        Y   +    P     +NA+  F   +  N +  K    + + A 
Sbjct: 521 LNTLQQLKF-------YKPYICDNDPKYERLVNAILDFLPKIEENLICSKY-TDLLRIAL 572

Query: 796 FDEDSY 801
             ED  
Sbjct: 573 MAEDEA 578

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 2e-10
 Identities = 81/571 (14%), Positives = 157/571 (27%), Gaps = 185/571 (32%)

Query: 327 YHQHHLEF------------------VIISDVNMRG--EFPSWLLENNTNLRSIILANNS 366
           +H HH++F                    + + + +   + P  +L +   +  II++ ++
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL-SKEEIDHIIMSKDA 60

Query: 367 LSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVL-PNLGFLTISFNAFNGSIPSSFG 425
           +SG  RL               +K +  +   + +VL  N  FL           PS   
Sbjct: 61  VSGTLRL----------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ-RQPS--- 106

Query: 426 DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSK--------KINLT 477
            M + +Y++  +                      L N+    Q+F+K         + L 
Sbjct: 107 -MMTRMYIEQRDR---------------------LYND---NQVFAKYNVSRLQPYLKLR 141

Query: 478 K-LKRLNLDGN---HFIGGIPESLSNC--SSLQGLYISDNDISGSIPT---WM--GNISF 526
           + L  L    N     + G          + +         +   +     W+   N + 
Sbjct: 142 QALLELRPAKNVLIDGVLG-------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 527 LDAIIMPDNHLEGPIPSEFCQL-DYLEILDLSKNNIAGRPLNGAFSKCSY---LLTLD-L 581
            + ++     L   I   +    D+   + L  ++I    L        Y   LL L  +
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE-LRRLLKSKPYENCLLVLLNV 253

Query: 582 CNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPC 641
            N +       W              N F        C++    LL              
Sbjct: 254 QNAKA------W--------------NAFNLS-----CKI----LL-------------- 270

Query: 642 LDNTSLHREEGYYD-LIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESI 700
              T+  R +   D L         +  +++   +   E      K      +  P E +
Sbjct: 271 ---TT--RFKQVTDFLSAATTTHISLDHHSMT--LTPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 701 HGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQV------ESLDLS 754
                          S I E IR                 T+ N + V        ++ S
Sbjct: 324 TTNPRRL--------SIIAESIRDG-------------LATWDNWKHVNCDKLTTIIESS 362

Query: 755 YNNLTGKIPPRLVEL-NALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLP 813
            N L    P    ++ + L+VF       S  IP  +     FD    +    +      
Sbjct: 363 LNVLE---PAEYRKMFDRLSVF-----PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 814 KICNENRSSTEASTHD-----NEEDDNLIDM 839
            +  +    +  S          + +N   +
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYAL 445

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 8e-04
 Identities = 38/240 (15%), Positives = 77/240 (32%), Gaps = 50/240 (20%)

Query: 11  QWQSVLCNATTSRV-IAIDLLSLNIASALYLNFSLFT-----PFQQLESL--DLSGNNIA 62
            W+ V C+  T+ +  ++++L       ++   S+F      P   L  +  D+      
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----- 400

Query: 63  GCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLS-SLKNLSLAYNRLEGSINIEE 121
              +++ +  ++ L     ++            S+  +   LK        L  SI ++ 
Sbjct: 401 ---KSDVMVVVNKLHKYSLVEKQPKES----TISIPSIYLELKVKLENEYALHRSI-VDH 452

Query: 122 LDSLSNLEGLDMSDNEIDN------------LVVPKDYRGLRKLRFLDLSGL--RIR-DG 166
            +     +  D+    +D             +  P+     R + FLD   L  +IR D 
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-FLDFRFLEQKIRHDS 511

Query: 167 SKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANL 226
           +    S     +L+ L      +   +            + L     DF   LP    NL
Sbjct: 512 TAWNASGSILNTLQQL----KFYKPYICDNDP-----KYERLVNAILDF---LPKIEENL 559

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 14/119 (11%)

Query: 44  LFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSL 103
           L   F++LE L      +        +  L  L+ LK L+LS N  +  +        +L
Sbjct: 37  LTDEFEELEFLSTINVGL------TSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 104 KNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRG-----LRKLRFLD 157
            +L+L+ N+++    IE L  L NL+ LD+ + E+ NL    DYR      L +L +LD
Sbjct: 91  THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL---NDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 9/136 (6%)

Query: 100 LSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLS 159
            S +K L L  +R          D    LE L   +  + ++    +   L KL+ L+LS
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELS 72

Query: 160 GLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHN---DFI 216
             R+  G +VL      P+L  L L S N  K ++T + L +L +L+ L + +    +  
Sbjct: 73  DNRVSGGLEVLAE--KCPNLTHLNL-SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

Query: 217 GSLPWCLANLTSLRVL 232
                    L  L  L
Sbjct: 130 DYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 538 EGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRL 597
           EG +     + + LE L      +    +     K + L  L+L +NR++G +     + 
Sbjct: 31  EGKLEGLTDEFEELEFLSTINVGL--TSIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKC 87

Query: 598 SQLRYLILANNNFEG-EVPLRLCQLQKLRLLDLSHN 632
             L +L L+ N  +       L +L+ L+ LDL + 
Sbjct: 88  PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 5/115 (4%)

Query: 148 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQE 207
           R    ++ L L   R  +G K+      F  L+ L   +      +T+   L +L  L++
Sbjct: 14  RTPSDVKELVLDNSRSNEG-KLEGLTDEFEELEFLSTINVG----LTSIANLPKLNKLKK 68

Query: 208 LYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNN 262
           L +  N   G L        +L  L++  N++ +  +  PL  L +++ L L N 
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 9/120 (7%)

Query: 124 SLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLY 183
           + S+++ L + ++  +   +        +L FL    + +      + ++     LK L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS----IANLPKLNKLKKLE 70

Query: 184 LKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP--WCLANLTSLRVLHVPDNQLTE 241
           L  N  +  +      C   +L  L +  N  I  L     L  L +L+ L + + ++T 
Sbjct: 71  LSDNRVSGGLEVLAEKCP--NLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTN 127

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 433 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKI----NLTKLKRLNLDGNH 488
           L L N++      E L      LE+L   N  L        I     L KLK+L L  N 
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL------TSIANLPKLNKLKKLELSDNR 75

Query: 489 FIGGIPESLSNCSSLQGLYISDNDIS 514
             GG+      C +L  L +S N I 
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 551 LEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLN--GNIPNWMGRLSQLRYLILANN 608
           ++ L L  +      L G   +   L  L   N  L    N+P     L++L+ L L++N
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK----LNKLKKLELSDN 74

Query: 609 NFEGEVPLRLCQLQKLRLLDLSHNNFS 635
              G + +   +   L  L+LS N   
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 446 EHLAMGCFNLEYLLLSNNSLQ-GQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQ 504
           E       +++ L+L N+    G+L        +L+ L+      +  I  +L   + L+
Sbjct: 10  ELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLK 67

Query: 505 GLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGP-IPSEFCQLDYLEILDLSKNNIAG 563
            L +SDN +SG +         L  + +  N ++         +L+ L+ LDL    +  
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127

Query: 564 RP 565
             
Sbjct: 128 LN 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 693 KGQPLESIHGLDLSCNKL-IGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESL 751
           + +    +  L L  ++   G++     E   +  L+     LT +I      L +++ L
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKL 69

Query: 752 DLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
           +LS N ++G +     +   L    ++ N + 
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 64.7 bits (158), Expect = 9e-12
 Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 24/146 (16%)

Query: 52  ESLDLSGNNIAGCVENEGLEK--LSGLSNLKFLDLSHNSFNNSVLSSLA-----GLSSLK 104
             + L  N I        +     S    L+ +DLS+N      +S LA     GL SL 
Sbjct: 35  TEIRLEQNTIKV------IPPGAFSPYKKLRRIDLSNNQ-----ISELAPDAFQGLRSLN 83

Query: 105 NLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKD-YRGLRKLRFLDLSGLRI 163
           +L L  N++   +     + L +L+ L ++ N+I+ L    D ++ L  L  L L   ++
Sbjct: 84  SLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCL--RVDAFQDLHNLNLLSLYDNKL 140

Query: 164 RDGSKVLHSIGSFPSLKTLYLKSNNF 189
           +  +    +     +++T++L  N F
Sbjct: 141 Q--TIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 10/132 (7%)

Query: 384 LDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPS-SFGDMNSLIYLDLSNNQLTG 442
           + +  N ++  IP         L  + +S N  +  +   +F  + SL  L L  N++T 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 443 EIPEHLAMGCFNLEYLLLSNNSLQG---QLFSKKINLTKLKRLNLDGNHFIGGIPESLSN 499
           E+P+ L  G F+L+ LLL+ N +       F     L  L  L+L  N        + S 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD---LHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 500 CSSLQGLYISDN 511
             ++Q ++++ N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 22/124 (17%)

Query: 45  FTPFQQLESLDLSGNNIAGCVENEGLEK--LSGLSNLKFLDLSHNSFNNSVLSSL----- 97
           F+P+++L  +DLS N I        L      GL +L  L L  N      ++ L     
Sbjct: 52  FSPYKKLRRIDLSNNQI------SELAPDAFQGLRSLNSLVLYGNK-----ITELPKSLF 100

Query: 98  AGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKD-YRGLRKLRFL 156
            GL SL+ L L  N++   + ++    L NL  L + DN++    + K  +  LR ++ +
Sbjct: 101 EGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQT--IAKGTFSPLRAIQTM 157

Query: 157 DLSG 160
            L+ 
Sbjct: 158 HLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 35/166 (21%)

Query: 101 SSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKD-YRGLRKLRFLDLS 159
            ++  + L  N ++  I          L  +D+S+N+I  L    D ++GLR L  L L 
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISEL--APDAFQGLRSLNSLVLY 88

Query: 160 GLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSL 219
           G +I +                  L  + F            L  LQ L ++ N  I  L
Sbjct: 89  GNKITE------------------LPKSLFEG----------LFSLQLLLLNANK-INCL 119

Query: 220 P-WCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHF 264
                 +L +L +L + DN+L   ++      L +I+ + L+ N F
Sbjct: 120 RVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 36/162 (22%), Positives = 55/162 (33%), Gaps = 33/162 (20%)

Query: 454 NLEYLLLSNN---SLQGQLFSKKINLTKLKRLNLDGNHFIGGIPE-SLSNCSSLQGLYIS 509
            +  + L  N    +    FS      KL+R++L  N  I  +   +     SL  L + 
Sbjct: 33  TITEIRLEQNTIKVIPPGAFS---PYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLY 88

Query: 510 DNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGA 569
            N I+  +P                        S F  L  L++L L+ N I       A
Sbjct: 89  GNKIT-ELP-----------------------KSLFEGLFSLQLLLLNANKINCLR-VDA 123

Query: 570 FSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE 611
           F     L  L L +N+L          L  ++ + LA N F 
Sbjct: 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 10/113 (8%)

Query: 355 TNLRSIILANNSLSGPFRLPTR---SRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTI 411
             LR I L+NN +S    L        +++ +L +  NK+   +P  + + L +L  L +
Sbjct: 56  KKLRRIDLSNNQIS---ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL 111

Query: 412 SFNAFNGSIPS-SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN 463
           + N  N  +   +F D+++L  L L +N+L   I +        ++ + L+ N
Sbjct: 112 NANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 534 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNW 593
            N ++   P  F     L  +DLS N I+      AF     L +L L  N++   +P  
Sbjct: 41  QNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKIT-ELPKS 98

Query: 594 M-GRLSQLRYLILANNNFEGEVPLRL-CQLQKLRLLDLSHNNFS 635
           +   L  L+ L+L  N     + +     L  L LL L  N   
Sbjct: 99  LFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 552 EILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE 611
             + L +N I   P  GAFS    L  +DL NN+++   P+    L  L  L+L  N   
Sbjct: 35  TEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 612 GEVPLRLCQ-LQKLRLLDLSHNNFSGQIPP 640
            E+P  L + L  L+LL L+ N  +  +  
Sbjct: 94  -ELPKSLFEGLFSLQLLLLNANKIN-CLRV 121

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 12/128 (9%)

Query: 167 SKVLHSI--GSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP-WCL 223
            K L  I      ++  + L+ N                 L+ + + +N  I  L     
Sbjct: 20  GKGLTEIPTNLPETITEIRLEQNTIKVIPPGA--FSPYKKLRRIDLSNNQ-ISELAPDAF 76

Query: 224 ANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEP--FFNYSKLKI 281
             L SL  L +  N++TE L  S    L S++LL+L+ N       L    F +   L +
Sbjct: 77  QGLRSLNSLVLYGNKITE-LPKSLFEGLFSLQLLLLNANKIN---CLRVDAFQDLHNLNL 132

Query: 282 FHGRENQI 289
               +N++
Sbjct: 133 LSLYDNKL 140

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 75/478 (15%), Positives = 152/478 (31%), Gaps = 74/478 (15%)

Query: 43  SLFTPFQQLESLDLSG-----------NNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNN 91
           ++   F ++ S++L G           +   G V        S  + L+ + L      +
Sbjct: 60  TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTD 119

Query: 92  SVLSSLA-GLSSLKNLSLAYNRLEGSINIEEL-DSLSNLEGLDMSDNEIDNL---VVPKD 146
             L  +A    + K L L+      +  +  +  +  NL+ LD+ ++++D++    +   
Sbjct: 120 DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179

Query: 147 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSF-PSLKTLYLKSNNFAKTVTTTQGLCELA-- 203
                 L  L++S L        L  + +  P+LK+L L            + L  L   
Sbjct: 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV------PLEKLATLLQR 233

Query: 204 --HLQELY------IDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIE 255
              L+EL           D    L   L+    LR L             +     + + 
Sbjct: 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG-FWDAVPAYLPAVYSVCSRLT 292

Query: 256 LLILSNNHFQ---IPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLT--------PKF 304
            L LS    Q   +   L       +L +    E+     + S+   L         P  
Sbjct: 293 TLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFV 352

Query: 305 QLTSISLSDHGDSDGGTIPKFLYHQHHLEFVI-----ISDVNMRGEFPSWLLENNTNLRS 359
              +++L++ G      +         LE V+     +++  +       +  N  N+  
Sbjct: 353 MEPNVALTEQG------LVSVSMGCPKLESVLYFCRQMTNAALIT-----IARNRPNMTR 401

Query: 360 IILANNSLSGPFRLP-----------TRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGF 408
             L       P  L                K++  L +S   L   +   IG     +  
Sbjct: 402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEM 460

Query: 409 LTISFNAF-NGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSL 465
           L+++F    +  +       +SL  L++ +     +     A     +  L +S+ S+
Sbjct: 461 LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 59.5 bits (144), Expect = 3e-09
 Identities = 73/496 (14%), Positives = 144/496 (29%), Gaps = 72/496 (14%)

Query: 116 SINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIG- 174
           S+ ++     ++   +           +         L  + L  + + D    L  I  
Sbjct: 70  SVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDC--LELIAK 127

Query: 175 SFPSLKTLYLKS-NNFAKTVTTTQGLCELA----HLQELYIDHNDFIGSLPWCLA----N 225
           SF + K L L S   F     +T GL  +A    +L+EL +  +D        L+     
Sbjct: 128 SFKNFKVLVLSSCEGF-----STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182

Query: 226 LTSLRVLHVPDNQLTENLSSSPLMHLT--SIELLILSNNHFQIPMSLEPFFNY-SKLKIF 282
            TSL  L++  + L   +S S L  L      L  L  N       L        +L+  
Sbjct: 183 YTSLVSLNI--SCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL 240

Query: 283 HGRENQIFGEIESSHSSLTPKFQLTSI-SLSDHGDSDGGTIPKFLYHQHHLEFVIISDVN 341
                      +              +  LS   D+    +P        L  + +S   
Sbjct: 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT 300

Query: 342 MRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGK 401
           ++      LL     L+ + + +        +   + K++  L +  ++      +E   
Sbjct: 301 VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSE---PFVMEPNV 357

Query: 402 VLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS 461
            L   G +++S                 L  +     Q+T      +A    N+    L 
Sbjct: 358 ALTEQGLVSVSMG------------CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405

Query: 462 NNSLQGQLFSKKI-----------NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISD 510
               +   +               +   L+RL+L G           +    ++ L ++ 
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAF 465

Query: 511 NDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAF 570
              S             D  +    H+        C    L  L++       + L    
Sbjct: 466 AGDS-------------DLGMH---HV-----LSGCD--SLRKLEIRDCPFGDKALLANA 502

Query: 571 SKCSYLLTLDLCNNRL 586
           SK   + +L + +  +
Sbjct: 503 SKLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 54/418 (12%), Positives = 114/418 (27%), Gaps = 34/418 (8%)

Query: 376 RSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISF--NAFNGSIPSSFGDMNSLIYL 433
            S   +  + +    +       I K   N   L +S         + +      +L  L
Sbjct: 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKEL 161

Query: 434 DLSNNQ---LTGEIPEHLAMGCFNLEYLLLSNNSLQ---GQLFSKKINLTKLKRLNLDGN 487
           DL  +    ++G    H      +L  L +S  + +     L         LK L L+  
Sbjct: 162 DLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221

Query: 488 HFIGGIPESLSNCSSLQGLYIS------DNDISGSIPTWMGNISFLDAIIMPDNHLEGPI 541
             +  +   L     L+ L           D+   +   +     L  +    + +   +
Sbjct: 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYL 281

Query: 542 PSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLR 601
           P+ +     L  L+LS   +    L     +C  L  L + +   +  +         LR
Sbjct: 282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR 341

Query: 602 YLILANNNFEGEVPLRLC----------QLQKLRLLDLSHNNFS-------GQIPPCLDN 644
            L +  +      P                 KL  +       +        +  P +  
Sbjct: 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR 401

Query: 645 TSLHREEGYYDLIPTYRNEYDIVSYNVGPSMG-EKETIDFTTKERSYTYKGQPLESIHGL 703
             L   E       T           V       + ++     ++ + Y G   + +  L
Sbjct: 402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEML 461

Query: 704 DLSCNKLIGEIPSRIGE-LIRIHTLNLSR-NNLTGTIPVTFSNLRQVESLDLSYNNLT 759
            ++           +      +  L +         +    S L  + SL +S  +++
Sbjct: 462 SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 49/301 (16%), Positives = 95/301 (31%), Gaps = 28/301 (9%)

Query: 348 SWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLG 407
           SW        R + + N     P  +  R    + ++++                  +  
Sbjct: 36  SWYEIERWCRRKVFIGNCYAVSPATVIRR-FPKVRSVELKGKPH-----------FADFN 83

Query: 408 FLTISFNAFNGSIPSSFGDMN-SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ 466
            +   +  +      +       L  + L    +T +  E +A    N + L+LS+    
Sbjct: 84  LVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143

Query: 467 GQLFSKKI--NLTKLKRLNLDGNHFIGGIPESLS----NCSSLQGLYISD--NDIS-GSI 517
                  I      LK L+L  +         LS      +SL  L IS   +++S  ++
Sbjct: 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSAL 203

Query: 518 PTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSK-----NNIAGRPLNGAFSK 572
              +     L ++ +        + +   +   LE L                L+ A S 
Sbjct: 204 ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263

Query: 573 CSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRL-CQLQKLRLLDLSH 631
           C  L  L    + +   +P      S+L  L L+    +    ++L CQ  KL+ L +  
Sbjct: 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD 323

Query: 632 N 632
            
Sbjct: 324 Y 324

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.3 bits (107), Expect = 9e-05
 Identities = 21/170 (12%), Positives = 47/170 (27%), Gaps = 11/170 (6%)

Query: 43  SLFTPFQQLESLDLSGNNIAGC------VENEGLEKL-SGLSNLKFLDLSHNSFNNSVLS 95
           ++      +    L                + G   +     +L+ L LS    +     
Sbjct: 391 TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEY 450

Query: 96  SLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRF 155
                  ++ LS+A+           L    +L  L++ D    +  +  +   L  +R 
Sbjct: 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS 510

Query: 156 LDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHL 205
           L +S   +  G+         P L    +          +    C +  +
Sbjct: 511 LWMSSCSVSFGA-CKLLGQKMPKLNVEVIDERG---APDSRPESCPVERV 556

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 51/361 (14%), Positives = 105/361 (29%), Gaps = 36/361 (9%)

Query: 305 QLTSISLSDHGDSDGG--TIPKFLYHQHHLEFVIISDVNMRGEFPSW--LLENNTNLRSI 360
            L  + L +    D     +  F      L  + IS +     F +   L+    NL+S+
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216

Query: 361 ILANN-SLSGPFRLPTRSRK----NIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNA 415
            L     L     L  R+ +                              L  L+  ++A
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276

Query: 416 FNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKIN 475
               +P+ +   + L  L+LS   +       L   C  L+ L + +      L      
Sbjct: 277 VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST 336

Query: 476 LTKLKRLNLDGNHFIG----------GIPESLSNCSSLQGLYISDNDISG----SIPTWM 521
              L+ L +  +              G+      C  L+ +      ++     +I    
Sbjct: 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR 396

Query: 522 GNISFLDAIIMPDNHLEGP--------IPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKC 573
            N++     I+     +            +       L  L LS   +  +      +  
Sbjct: 397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS-GLLTDKVFEYIGTYA 455

Query: 574 SYLLTLDL--CNNRLNGNIPNWMGRLSQLRYLILANNNF-EGEVPLRLCQLQKLRLLDLS 630
             +  L +    +   G + + +     LR L + +  F +  +     +L+ +R L +S
Sbjct: 456 KKMEMLSVAFAGDSDLG-MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514

Query: 631 H 631
            
Sbjct: 515 S 515

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 54/320 (16%), Positives = 111/320 (34%), Gaps = 73/320 (22%)

Query: 350 LLENNTNLRSIILANNSLSGP-----FRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLP 404
                  + S+ L+ N+L         +    +  ++ +L++S N L      E+ ++L 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 405 NLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE----IPEHLAMGCFNLEYLLL 460
                         +IP+      ++  L+LS N L+ +    + + LA   F +  L L
Sbjct: 77  --------------AIPA------NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL 116

Query: 461 SNNSLQ---GQLFSK--KINLTKLKRLNLDGNHF----IGGIPESLSNC-SSLQGLYISD 510
             N         F +        +  LNL GN         + + L+   +++  L +  
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176

Query: 511 NDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI---AGRPLN 567
           N+++               +                    +  LDLS N +   +   L 
Sbjct: 177 NNLASK-----NCAELAKFLASIPAS--------------VTSLDLSANLLGLKSYAELA 217

Query: 568 GAFSKC-SYLLTLDLCNNRLNG----NIPNWMGRLSQLRYLILANNNF--EGEVPLR--- 617
             FS   +++++L+LC N L+G    N+      L  L+ + L  +      +   +   
Sbjct: 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277

Query: 618 --LCQLQKLRLLDLSHNNFS 635
                +QK+ L+D +     
Sbjct: 278 AAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 43/270 (15%), Positives = 97/270 (35%), Gaps = 48/270 (17%)

Query: 35  ASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGL-----SNLKFLDLSHNSF 89
            S + L  +       + SL+LSGN++      +  ++L  +     +N+  L+LS N  
Sbjct: 37  ISTVELIQAFANTPASVTSLNLSGNSL----GFKNSDELVQILAAIPANVTSLNLSGNFL 92

Query: 90  NNSVLSSLAGL-----SSLKNLSLAYNRLEGSINIEELDSL-----SNLEGLDMSDNEID 139
           +      L         ++  L L +N    S +  E         +++  L++  N++ 
Sbjct: 93  SYKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLG 151

Query: 140 NLVVPKDYRGLR----KLRFLDLSGLRIRDG-----SKVLHSIGSFPSLKTLYLKSNNFA 190
                +  + L      +  L+L G  +        +K L SI +  S+ +L L +N   
Sbjct: 152 IKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA--SVTSLDLSANLL- 208

Query: 191 KTVTTTQGLCEL-----AHLQELYIDHNDF----IGSLPWCLANLTSLRVLHVPDNQLTE 241
             + +   L  +      H+  L +  N      + +L     +L  L+ +++  + +  
Sbjct: 209 -GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKN 267

Query: 242 ------NLSSSPLMHLTSIELLILSNNHFQ 265
                     +   ++  I L+  +     
Sbjct: 268 MSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 45/272 (16%), Positives = 92/272 (33%), Gaps = 61/272 (22%)

Query: 34  IASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGL-----SNLKFLDLSHNS 88
           +     +          + SLDLS NN+     +    +L        +++  L+LS NS
Sbjct: 14  VEEFTSIP-------HGVTSLDLSLNNL----YSISTVELIQAFANTPASVTSLNLSGNS 62

Query: 89  FNNSVLSSLAGL-----SSLKNLSLAYNRLEGSINIEEL-----DSLSNLEGLDMSDNEI 138
                   L  +     +++ +L+L+ N L    + +EL          +  LD+  N+ 
Sbjct: 63  LGFKNSDELVQILAAIPANVTSLNLSGNFL-SYKSSDELVKTLAAIPFTITVLDLGWNDF 121

Query: 139 DNLVVPKDYRGLRK----LRFLDLSGLRIRDG-----SKVLHSIGSFPSLKTLYLKSNNF 189
            +    +  +        +  L+L G  +         ++L +I +  ++ +L L+ NN 
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA--NVNSLNLRGNNL 179

Query: 190 AKTVTTTQGLCELA--------HLQELYIDHNDF--IGSLPWCLA---NLTSLRVLHVPD 236
                 ++   ELA         +  L +  N                    +  L++  
Sbjct: 180 -----ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234

Query: 237 NQLT----ENLSSSPLMHLTSIELLILSNNHF 264
           N L     ENL       L  ++ + L  +  
Sbjct: 235 NCLHGPSLENLKLL-KDSLKHLQTVYLDYDIV 265

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 54/381 (14%), Positives = 105/381 (27%), Gaps = 100/381 (26%)

Query: 429 SLIYLDLSNNQLTGEIPEHLAMG----CFNLEYLLLSNNSLQ---GQLFSK--KINLTKL 479
            +  LDLS N L       L         ++  L LS NSL         +        +
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82

Query: 480 KRLNLDGNHF----IGGIPESLSNC-SSLQGLYISDNDISGSIPTWMGNISFLDAIIMPD 534
             LNL GN         + ++L+    ++  L +  ND S        +  F  A     
Sbjct: 83  TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK-----SSSEFKQAFSNLP 137

Query: 535 NHLEGPIPSEFCQLDYLEILDLSKNNI---AGRPLNGAFSKC-SYLLTLDLCNNRL---- 586
                           +  L+L  N++   +   L    +   + + +L+L  N L    
Sbjct: 138 AS--------------ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183

Query: 587 ---------NGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQL-----QKLRLLDLSHN 632
                    +          + +  L L+ N    +    L  +       +  L+L  N
Sbjct: 184 CAELAKFLASIP--------ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235

Query: 633 NFSGQIPPCL-----DNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKE 687
              G     L         L                   + Y++  +M +++        
Sbjct: 236 CLHGPSLENLKLLKDSLKHLQTVY---------------LDYDIVKNMSKEQCKALGAAF 280

Query: 688 RSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTG----------T 737
            +       ++ I  +D +  ++       I  LIR  +      +L            T
Sbjct: 281 PN-------IQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQT 333

Query: 738 IPVTFSNLRQVESLDLSYNNL 758
                +   ++     +   L
Sbjct: 334 NIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 34/251 (13%), Positives = 76/251 (30%), Gaps = 45/251 (17%)

Query: 35  ASALYLNFSLFTPFQQLESLDLSGNNI--AGCVE-NEGLEKLSGLSNLKFLDLSHNSFNN 91
            S+     +       + SL+L GN++      E  + L  +   +N+  L+L  N+  +
Sbjct: 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP--ANVNSLNLRGNNLAS 181

Query: 92  SVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLR 151
              + LA    L ++                   +++  LD+S N +      +      
Sbjct: 182 KNCAELA--KFLASIP------------------ASVTSLDLSANLLGLKSYAELAYIFS 221

Query: 152 ----KLRFLDLSGLRIRD-GSKVLHS-IGSFPSLKTLYLKSNNF-----AKTVTTTQGLC 200
                +  L+L    +     + L     S   L+T+YL  +        +         
Sbjct: 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP 281

Query: 201 ELAHLQELYIDHNDFIGSLPWCLANL-----TSLRVLHVPDNQLTE----NLSSSPLMHL 251
            +  +  +  +  +   S    ++NL         V  + +  L        +   L   
Sbjct: 282 NIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIP 341

Query: 252 TSIELLILSNN 262
             +   I +  
Sbjct: 342 DELRESIQTCK 352

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 50/339 (14%), Positives = 114/339 (33%), Gaps = 46/339 (13%)

Query: 73  LSGLSNLKFLDLSHNSFNNSVLSSLAGL-----SSLKNLSLAYNRL--EGSINIEEL--D 123
            S    +  LDLS N+  +     L        +S+ +L+L+ N L  + S  + ++   
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 124 SLSNLEGLDMSDNEIDNLVVPKDYRGLR----KLRFLDLSGLRIRD-GSKVL-HSIGSFP 177
             +N+  L++S N +      +  + L      +  LDL         S     +  + P
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 178 -SLKTLYLKSNNFAKTVTTTQGLCEL-----AHLQELYIDHNDF----IGSLPWCLANL- 226
            S+ +L L+ N+    + ++  L ++     A++  L +  N+        L   LA++ 
Sbjct: 138 ASITSLNLRGNDL--GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195

Query: 227 TSLRVLHVPDNQLTEN----LSSSPLMHLTSIELLILSNNHFQ------IPMSLEPFFNY 276
            S+  L +  N L       L+         +  L L  N         + +  +   + 
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 277 SKLKIFHGRENQIFGE-IESSHSSLTPKFQLTSISLSDH--GDSDGGTIPKFLYH-QHHL 332
             + + +     +  E  ++  ++     ++  +  +      S    I   +       
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKA 315

Query: 333 EFVIISDVNM----RGEFPSWLLENNTNLRSIILANNSL 367
           +   + +  +    + +     L     LR  I     L
Sbjct: 316 DVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 43/357 (12%), Positives = 104/357 (29%), Gaps = 72/357 (20%)

Query: 177 PSLKTLYLKSNNFAKTVTTTQGLCEL-----AHLQELYIDHNDF----IGSLPWCLA-NL 226
             + +L L  NN      +T  L +      A +  L +  N         L   LA   
Sbjct: 22  HGVTSLDLSLNNL--YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 227 TSLRVLHVPDNQLTEN----LSSSPLMHLTSIELLILSNNHFQ------IPMSLEPFFNY 276
            ++  L++  N L+      L  +      +I +L L  N F          +       
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN--LP 137

Query: 277 SKLKIFHGRENQI--FGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEF 334
           + +   + R N +      E           + S++L  +  +                 
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCA------------ 185

Query: 335 VIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGP-----FRLPTRSRKNIIALDISYN 389
             ++           L     ++ S+ L+ N L          + +    ++++L++  N
Sbjct: 186 -ELAKF---------LASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235

Query: 390 KLQGHIPVEIGKVL---PNLGFLTISFNAFNG-------SIPSSFGDMNSLIYLDLSNNQ 439
            L G     +  +     +L  + + ++           ++ ++F ++  +I +D +  +
Sbjct: 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295

Query: 440 LTGEIPEHLAMG----CFNLEYLLLSNNSL-----QGQLFSKKINLTKLKRLNLDGN 487
           +       ++          +   L N  L                 +L+       
Sbjct: 296 IHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.4 bits (152), Expect = 4e-11
 Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 9/132 (6%)

Query: 384 LDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 443
           L ++ N+        I K LP L  +  S N        +F   + +  + L++N+L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 444 IPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKINLTKLKRLNLDGNHFIGGIPE-SLSN 499
           +   +  G  +L+ L+L +N    +    F     L+ ++ L+L  N  I  +   +   
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIG---LSSVRLLSLYDNQ-ITTVAPGAFDT 151

Query: 500 CSSLQGLYISDN 511
             SL  L +  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 21/120 (17%)

Query: 409 LTISFNAFNGSIPSS--FGDMNSLIYLDLSNNQLTGEIPEHLAMGCF----NLEYLLLSN 462
           L ++ N F   + ++  F  +  L  ++ SNN++T +I E    G F     +  +LL++
Sbjct: 37  LRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKIT-DIEE----GAFEGASGVNEILLTS 90

Query: 463 N---SLQGQLFSKKINLTKLKRLNLDGNHFIGGIPE-SLSNCSSLQGLYISDNDISGSIP 518
           N   ++Q ++F     L  LK L L  N  I  +   S    SS++ L + DN I+ ++ 
Sbjct: 91  NRLENVQHKMFKG---LESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 22/126 (17%)

Query: 43  SLFTPFQQLESLDLSGNNIAGCVENEGLEK--LSGLSNLKFLDLSHNSFNNSVLSSL--- 97
            +F    QL  ++ S N I        +E+    G S +  + L+ N      L ++   
Sbjct: 51  GIFKKLPQLRKINFSNNKI------TDIEEGAFEGASGVNEILLTSNR-----LENVQHK 99

Query: 98  --AGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKD-YRGLRKLR 154
              GL SLK L L  NR+   +  +    LS++  L + DN+I    V    +  L  L 
Sbjct: 100 MFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITT--VAPGAFDTLHSLS 156

Query: 155 FLDLSG 160
            L+L  
Sbjct: 157 TLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 31/156 (19%), Positives = 49/156 (31%), Gaps = 33/156 (21%)

Query: 433 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG---QLFSKKINLTKLKRLNLDGNHF 489
           L L+NN+ T      +      L  +  SNN +       F      + +  + L  N  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---ASGVNEILLTSNR- 92

Query: 490 IGGIPESL-SNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQL 548
           +  +   +     SL+ L +  N I+  +                           F  L
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRIT-CVG-----------------------NDSFIGL 128

Query: 549 DYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNN 584
             + +L L  N I      GAF     L TL+L  N
Sbjct: 129 SSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 29/152 (19%)

Query: 126 SNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTL 182
                L +++NE   L     ++ L +LR ++ S  +I D    +   G+F     +  +
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD----IEE-GAFEGASGVNEI 86

Query: 183 YLKSNN--------FAKTVTTTQGLCELAHLQELYIDHNDFIGSLPW-CLANLTSLRVLH 233
            L SN         F            L  L+ L +  N  I  +       L+S+R+L 
Sbjct: 87  LLTSNRLENVQHKMFKG----------LESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLS 135

Query: 234 VPDNQLTENLSSSPLMHLTSIELLILSNNHFQ 265
           + DNQ+T  ++      L S+  L L  N F 
Sbjct: 136 LYDNQIT-TVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 534 DNHLEG-PIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPN 592
           +N          F +L  L  ++ S N I      GAF   S +  + L +NRL  N+ +
Sbjct: 41  NNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLE-NVQH 98

Query: 593 WM-GRLSQLRYLILANNNFEGEVPLRL-CQLQKLRLLDLSHNNFSGQIPP 640
            M   L  L+ L+L +N     V       L  +RLL L  N  +  + P
Sbjct: 99  KMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAP 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 43/181 (23%), Positives = 68/181 (37%), Gaps = 36/181 (19%)

Query: 434 DLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKI--NLTKLKRLNLDGNHFIG 491
           D SN +L  +IPEH+         L L+NN     L +  I   L +L+++N   N  I 
Sbjct: 17  DCSNQKLN-KIPEHIPQ---YTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNK-IT 70

Query: 492 GIPE-SLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDY 550
            I E +    S +  + ++ N +  ++   M                       F  L+ 
Sbjct: 71  DIEEGAFEGASGVNEILLTSNRLE-NVQHKM-----------------------FKGLES 106

Query: 551 LEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWM-GRLSQLRYLILANNN 609
           L+ L L  N I     N +F   S +  L L +N++   +       L  L  L L  N 
Sbjct: 107 LKTLMLRSNRITCVG-NDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANP 164

Query: 610 F 610
           F
Sbjct: 165 F 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 552 EILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE 611
             L L+ N        G F K   L  ++  NN++           S +  ++L +N  E
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 612 GEVPLRLCQ-LQKLRLLDLSHNNFSGQIPP 640
             V  ++ + L+ L+ L L  N  +  +  
Sbjct: 95  -NVQHKMFKGLESLKTLMLRSNRIT-CVGN 122

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 63.4 bits (154), Expect = 8e-11
 Identities = 53/243 (21%), Positives = 93/243 (38%), Gaps = 21/243 (8%)

Query: 1   WVDESYSDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNN 60
           W     +       V     +  VIA       +   L  +FS F    +++ +DLS + 
Sbjct: 49  WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF----RVQHMDLSNSV 104

Query: 61  IAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIE 120
           I     +     LS  S L+ L L     ++ ++++LA  S+L  L+L+         ++
Sbjct: 105 I---EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ 161

Query: 121 EL-DSLSNLEGLDMS------DNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSI 173
            L  S S L+ L++S      +  +   V          +  L+LSG R       L ++
Sbjct: 162 TLLSSCSRLDELNLSWCFDFTEKHVQVAVA----HVSETITQLNLSGYRKNLQKSDLSTL 217

Query: 174 GSF-PSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSL-PWCLANLTSLRV 231
               P+L  L L S++        Q   +L +LQ L +     I       L  + +L+ 
Sbjct: 218 VRRCPNLVHLDL-SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276

Query: 232 LHV 234
           L V
Sbjct: 277 LQV 279

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 61.4 bits (149), Expect = 3e-10
 Identities = 44/209 (21%), Positives = 82/209 (39%), Gaps = 27/209 (12%)

Query: 429 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNH 488
            + ++DLSN+ +       +   C  L+ L L    L   + +     + L RLNL G  
Sbjct: 94  RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 153

Query: 489 FI--GGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFC 546
                 +   LS+CS L  L +S          W  + +        + H++  +     
Sbjct: 154 GFSEFALQTLLSSCSRLDELNLS----------WCFDFT--------EKHVQVAVAH--- 192

Query: 547 QLDYLEILDLSK--NNIAGRPLNGAFSKCSYLLTLDLCN-NRLNGNIPNWMGRLSQLRYL 603
             + +  L+LS    N+    L+    +C  L+ LDL +   L  +      +L+ L++L
Sbjct: 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252

Query: 604 ILAN-NNFEGEVPLRLCQLQKLRLLDLSH 631
            L+   +   E  L L ++  L+ L +  
Sbjct: 253 SLSRCYDIIPETLLELGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 43/238 (18%), Positives = 82/238 (34%), Gaps = 32/238 (13%)

Query: 373 LPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIY 432
               S   +  +D+S + ++      I      L  L++     +  I ++    ++L+ 
Sbjct: 87  AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146

Query: 433 LDLSN-NQLTGEIPEHLAMGCFNLEYLLLSNNSL---QGQLFSKKINLTKLKRLNLDGNH 488
           L+LS  +  +    + L   C  L+ L LS       +    +       + +LNL G  
Sbjct: 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206

Query: 489 FI---GGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEF 545
                  +   +  C +L  L +SD+            +   +               EF
Sbjct: 207 KNLQKSDLSTLVRRCPNLVHLDLSDSV----------MLK--NDCF-----------QEF 243

Query: 546 CQLDYLEILDLSK-NNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRY 602
            QL+YL+ L LS+  +I    L     +   L TL +     +G +      L  L+ 
Sbjct: 244 FQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI 300

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 60.9 bits (148), Expect = 6e-10
 Identities = 43/244 (17%), Positives = 80/244 (32%), Gaps = 37/244 (15%)

Query: 49  QQLESLDLSGNNI--AGCVE-NEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLA-GLSSLK 104
             L  L+L+G  +    C      L   SG   L  ++L+    + + L +L       +
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVL--GSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129

Query: 105 NLSLAYNRL--EGSINIEEL--DSLSNLEGLDMSDNEIDNLVVPKDYRGLR---KLRFLD 157
            L L  N L  E   ++ +L       +  L +S+N +    V     GL     +  L 
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLS 189

Query: 158 LSGLRIRD-GSKVL-HSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELA-------HLQEL 208
           L    + D G ++L   +     L+ L +  N              LA        L+ L
Sbjct: 190 LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA-----GDTAALALARAAREHPSLELL 244

Query: 209 YIDHNDF-------IGSLPWCLANLTSLRVLHVPDNQLTEN---LSSSPLMHLTSIELLI 258
           ++  N+        +  L         + V       ++E    + S    +L S +   
Sbjct: 245 HLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRAR 304

Query: 259 LSNN 262
           +  +
Sbjct: 305 VQRH 308

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 41/222 (18%), Positives = 71/222 (31%), Gaps = 37/222 (16%)

Query: 73  LSGLSNLKFLDLSHNSFNNSVLSSLAGL-----SSLKNLSLAYNRL--EGSINIEELDSL 125
              LS+L+ L+L+         + +A +      +L  ++LA  +L   G   +  L   
Sbjct: 68  AEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL--LPVF 125

Query: 126 SNLEGLDMSDNEIDNLVVPKDYRGLR----KLRFLDLSGLRIRD-GSKVL-HSIGSFPSL 179
                L +  N +           L     ++  L LS   +   G  VL   +    S+
Sbjct: 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSV 185

Query: 180 KTLYLKSNNFAKTVTTTQGLCELA-------HLQELYIDHNDF----IGSLPWCLANLTS 228
             L L            +GL  LA        LQEL + +N        +L        S
Sbjct: 186 THLSLLHTGL-----GDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPS 240

Query: 229 LRVLHVPDNQLTEN----LSS--SPLMHLTSIELLILSNNHF 264
           L +LH+  N+L+      L            + + +      
Sbjct: 241 LELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 46/318 (14%), Positives = 94/318 (29%), Gaps = 62/318 (19%)

Query: 348 SWLLENNTNLRSIILANNSLSGP------FRLPTRSRKNIIALDISYNKLQGHIPVEIGK 401
            +  E  ++LR + LA   ++          L +  R  +  ++++  +L       +  
Sbjct: 65  RFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGS-GRHALDEVNLASCQLDPAGLRTLLP 123

Query: 402 VLPNLGFLTISFNAFNGSIPSSFGDM-----NSLIYLDLSNNQLTGEIPEHLAMG---CF 453
           V      L +  N+          D+       +  L LSNN LT      L  G     
Sbjct: 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT 183

Query: 454 NLEYLLLSNNSLQ---GQLFSK--KINLTKLKRLNLDGNHF----IGGIPESLSNCSSLQ 504
           ++ +L L +  L     +L +     N  +L+ LN+  N         +  +     SL+
Sbjct: 184 SVTHLSLLHTGLGDEGLELLAAQLDRN-RQLQELNVAYNGAGDTAALALARAAREHPSLE 242

Query: 505 GLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI--- 561
            L++  N++S       G     D     +                + +       +   
Sbjct: 243 LLHLYFNELSSE-----GRQVLRDLGGAAEGGAR------------VVVSLTEGTAVSEY 285

Query: 562 AGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQL 621
               L+      +      +  +              +L    L ++      P R  QL
Sbjct: 286 WSVILSEVQRNLNSWDRARVQRH-------------LELLLRDLEDSRGATLNPWRKAQL 332

Query: 622 ----QKLRLLDLSHNNFS 635
                ++R L     +  
Sbjct: 333 LRVEGEVRALLEQLGSSG 350

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 18/111 (16%)

Query: 409 LTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF----NLEYLLLSNN- 463
           L +  N F   +P    +   L  +DLSNN+++      L+   F     L  L+LS N 
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-----TLSNQSFSNMTQLLTLILSYNR 89

Query: 464 --SLQGQLFSKKINLTKLKRLNLDGNHFIGGIPE-SLSNCSSLQGLYISDN 511
              +  + F     L  L+ L+L GN  I  +PE + ++ S+L  L I  N
Sbjct: 90  LRCIPPRTFDG---LKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 541 IPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQL 600
           +P E     +L ++DLS N I+    N +FS  + LLTL L  NRL    P     L  L
Sbjct: 46  VPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104

Query: 601 RYLILANN 608
           R L L  N
Sbjct: 105 RLLSLHGN 112

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 10/83 (12%)

Query: 703 LDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKI 762
           L L  N+    +P  +     +  ++LS N ++     +FSN+ Q+ +L LSYN L   I
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-I 93

Query: 763 PP----RLVELNALAVFTVAHNN 781
           PP     L  L  L++    H N
Sbjct: 94  PPRTFDGLKSLRLLSL----HGN 112

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 16/92 (17%)

Query: 52  ESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSL-----AGLSSLKNL 106
             L L GN           ++LS   +L  +DLS+N      +S+L     + ++ L  L
Sbjct: 34  TELYLDGNQF-----TLVPKELSNYKHLTLIDLSNNR-----ISTLSNQSFSNMTQLLTL 83

Query: 107 SLAYNRLEGSINIEELDSLSNLEGLDMSDNEI 138
            L+YNRL   I     D L +L  L +  N+I
Sbjct: 84  ILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDI 114

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 43/166 (25%), Positives = 65/166 (39%), Gaps = 20/166 (12%)

Query: 355 TNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFN 414
            +   + L +  L+       R    +  L++ YN+LQ  +   +   L  LG L ++ N
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANN 93

Query: 415 AFNGSIPSS-FGDMNSLIYLDLSNNQLTGEIPEHLAMGCF----NLEYLLLSNNSLQ--- 466
               S+P   F  +  L  L L  NQL   +P     G F     L+ L L+ N LQ   
Sbjct: 94  QLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPS----GVFDRLTKLKELRLNTNQLQSIP 147

Query: 467 -GQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDN 511
            G  F K   LT L+ L+L  N        +      LQ + +  N
Sbjct: 148 AG-AFDK---LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 48/181 (26%), Positives = 69/181 (38%), Gaps = 32/181 (17%)

Query: 433 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFI-- 490
           LDL +  L   + +    G   L +L L  N LQ        +LT+L  L L  N     
Sbjct: 40  LDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98

Query: 491 -GGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLD 549
             G+ + L+    L  LY+  N +  S+P                          F +L 
Sbjct: 99  PLGVFDHLTQ---LDKLYLGGNQLK-SLP-----------------------SGVFDRLT 131

Query: 550 YLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNN 609
            L+ L L+ N +   P  GAF K + L TL L  N+L         RL +L+ + L  N 
Sbjct: 132 KLKELRLNTNQLQSIP-AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

Query: 610 F 610
           F
Sbjct: 191 F 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 45/183 (24%), Positives = 70/183 (38%), Gaps = 40/183 (21%)

Query: 409 LTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ-- 466
           L +          ++F  +  L +L+L  NQL   +   +      L  L L+NN L   
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASL 98

Query: 467 -GQLFSKKINLTKLKRLNLDGNHFIGGIPE----SLSNCSSLQGLYISDNDISGSIPTWM 521
              +F     LT+L +L L GN  +  +P      L+    L+ L ++ N +  SIP   
Sbjct: 99  PLGVFDH---LTQLDKLYLGGNQ-LKSLPSGVFDRLTK---LKELRLNTNQLQ-SIP--- 147

Query: 522 GNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDL 581
                                  F +L  L+ L LS N +   P +GAF +   L T+ L
Sbjct: 148 --------------------AGAFDKLTNLQTLSLSTNQLQSVP-HGAFDRLGKLQTITL 186

Query: 582 CNN 584
             N
Sbjct: 187 FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 37/186 (19%)

Query: 82  LDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNL 141
           LDL          ++  GL+ L  L+L YN+L+ +++    D L+ L  L +++N++ +L
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASL 98

Query: 142 VVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSI--GSFPSLKTLYLKSNNFAKTVTTTQGL 199
                +  L +L  L L G +       L S+  G F                       
Sbjct: 99  -PLGVFDHLTQLDKLYLGGNQ-------LKSLPSGVFDR--------------------- 129

Query: 200 CELAHLQELYIDHNDFIGSLPW-CLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLI 258
             L  L+EL ++ N  + S+P      LT+L+ L +  NQL  ++       L  ++ + 
Sbjct: 130 --LTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTIT 185

Query: 259 LSNNHF 264
           L  N F
Sbjct: 186 LFGNQF 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 55/235 (23%), Positives = 89/235 (37%), Gaps = 53/235 (22%)

Query: 384 LDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 443
            ++    +           L ++  +  + +    S+      + ++ YL L  N+L   
Sbjct: 24  ANLKKKSVTD---AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNKLH-- 76

Query: 444 IPEHLAMGCF----NLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFI---GGIPES 496
                 +       NL YL+L+ N LQ         LT LK L L  N       G+ + 
Sbjct: 77  -----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131

Query: 497 LSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDL 556
           L+N   L  L ++ N +  S+P                          F +L  L  LDL
Sbjct: 132 LTN---LTYLNLAHNQLQ-SLP-----------------------KGVFDKLTNLTELDL 164

Query: 557 SKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMG---RLSQLRYLILANN 608
           S N +   P  G F K + L  L L  N+L  ++P+  G   RL+ L+Y+ L +N
Sbjct: 165 SYNQLQSLP-EGVFDKLTQLKDLRLYQNQLK-SVPD--GVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 28/194 (14%)

Query: 82  LDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNL 141
            +L   S   +   +   L+S+  +    + ++    I     L N+  L +  N++ ++
Sbjct: 24  ANLKKKSV--TDAVTQNELNSIDQIIANNSDIKSVQGI---QYLPNVRYLALGGNKLHDI 78

Query: 142 VVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSI--GSF---PSLKTLYLKSNNFAKTVTTT 196
                 + L  L +L L           L S+  G F    +LK L L  N      +  
Sbjct: 79  SA---LKELTNLTYLIL-------TGNQLQSLPNGVFDKLTNLKELVLVENQLQ---SLP 125

Query: 197 QGLC-ELAHLQELYIDHNDFIGSLP-WCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSI 254
            G+  +L +L  L + HN  + SLP      LT+L  L +  NQL   L       LT +
Sbjct: 126 DGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQL 183

Query: 255 ELLILSNNHFQ-IP 267
           + L L  N  + +P
Sbjct: 184 KDLRLYQNQLKSVP 197

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 31/176 (17%)

Query: 355 TNLRSIILANNSLS--GPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTIS 412
            ++  II  N+ +      +     R     L +  NKL   I       L NL +L ++
Sbjct: 41  NSIDQIIANNSDIKSVQGIQYLPNVRY----LALGGNKLHD-ISALKE--LTNLTYLILT 93

Query: 413 FNAFNGSIPSS-FGDMNSLIYLDLSNNQLT---GEIPEHLAMGCFNLEYLLLSNN---SL 465
            N    S+P+  F  + +L  L L  NQL      + + L     NL YL L++N   SL
Sbjct: 94  GNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT----NLTYLNLAHNQLQSL 148

Query: 466 QGQLFSKKINLTKLKRLNLDGNHFI---GGIPESLSNCSSLQGLYISDNDISGSIP 518
              +F K   LT L  L+L  N       G+ + L+    L+ L +  N +  S+P
Sbjct: 149 PKGVFDK---LTNLTELDLSYNQLQSLPEGVFDKLTQ---LKDLRLYQNQLK-SVP 197

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.1 bits (137), Expect = 1e-08
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 92  SVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLR 151
             L  L G  +L  L +   +    + + +L  L  L  L +  + +   V P  +    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTP 80

Query: 152 KLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 189
           +L  L+LS   +     +        SL+ L L  N  
Sbjct: 81  RLSRLNLSFNAL---ESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 8e-08
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 7/96 (7%)

Query: 419 SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKIN 475
                     +L  L + N Q    +      G   L  L +  +    +    F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---F 78

Query: 476 LTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDN 511
             +L RLNL  N  +  +        SLQ L +S N
Sbjct: 79  TPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 1e-07
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 45  FTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLK 104
               + L  L +        +E      L GL  L+ L +  +        +      L 
Sbjct: 27  LPGAENLTELYIENQQHLQHLEL---RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 105 NLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEID 139
            L+L++N LE S++ + +  LS L+ L +S N + 
Sbjct: 84  RLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 695 QPLESIHGLDLSCNKLIGEIPSR-IGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDL 753
              E++  L +   + +  +  R +  L  +  L + ++ L    P  F    ++  L+L
Sbjct: 28  PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87

Query: 754 SYNNLTGKIPPRLVELNALAVFTVAHNNL 782
           S+N L   +  + V+  +L    ++ N L
Sbjct: 88  SFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 4e-07
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 70  LEKLSGLSNLKFLDLSHNSFNNSV-LSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNL 128
           L  L G  NL  L + +      + L  L GL  L+NL++  + L   +  +       L
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRL 82

Query: 129 EGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSG 160
             L++S N +++L           L+ L LSG
Sbjct: 83  SRLNLSFNALESL--SWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 34/184 (18%), Positives = 53/184 (28%), Gaps = 33/184 (17%)

Query: 493 IPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE 552
               L    +L  LYI +      +                              L  L 
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRD-----------------------LRGLGELR 59

Query: 553 ILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEG 612
            L + K+ +       AF     L  L+L  N L       +  LS L+ L+L+ N    
Sbjct: 60  NLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGN---- 113

Query: 613 EVPLRL-CQLQKLRLLDLSHNNFSGQIPP-CLDNTSLHREEGYYDLIPTYRNEYDIVSYN 670
             PL   C L+ L+  +        +    C     L         +PT + +    S +
Sbjct: 114 --PLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVD 171

Query: 671 VGPS 674
           VG  
Sbjct: 172 VGDD 175

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 164 RDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPW-C 222
                 LH +    +L  LY+++    + +     L  L  L+ L I  +  +  +    
Sbjct: 18  DGALDSLHHLPGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKSG-LRFVAPDA 75

Query: 223 LANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQ 265
                 L  L++  N L   LS   +  L S++ L+LS N   
Sbjct: 76  FHFTPRLSRLNLSFNALES-LSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 5/108 (4%)

Query: 704 DLSC-NKLIGEIPSRIGELIRIHTLNLSRNNLTGTIP-VTFSNLRQVESLDLSYNNLTGK 761
            L C      +    +     +  L +        +       L ++ +L +  + L   
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-F 70

Query: 762 IPPR-LVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLC 808
           + P        L+   ++ N L   +  +  Q  +  E    GNP  C
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 4e-05
 Identities = 19/114 (16%), Positives = 30/114 (26%), Gaps = 27/114 (23%)

Query: 475 NLTKLKRLNLDGNHFIGGIP-ESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMP 533
               L  L ++    +  +    L     L+ L I  + +   +                
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVA--------------- 72

Query: 534 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLN 587
                   P  F     L  L+LS N +            S L  L L  N L+
Sbjct: 73  --------PDAFHFTPRLSRLNLSFNALESLS-WKTVQGLS-LQELVLSGNPLH 116

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 15/116 (12%)

Query: 409 LTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLT---GEIPEHLAMGCFNLEYLLLSNN-- 463
           L +  N      P  F  + +L  L L +NQL      + + L      L  L L  N  
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT----QLTVLDLGTNQL 100

Query: 464 -SLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIP 518
             L   +F +   L  LK L +  N     +P  +   + L  L +  N +  SIP
Sbjct: 101 TVLPSAVFDR---LVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK-SIP 151

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 17/146 (11%)

Query: 492 GIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYL 551
           GIP      ++ Q LY+ DN I+   P    ++  L  + +  N L       F  L  L
Sbjct: 37  GIP------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90

Query: 552 EILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE 611
            +LDL  N +   P +  F +  +L  L +C N+L   +P  + RL+ L +L L  N  +
Sbjct: 91  TVLDLGTNQLTVLP-SAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148

Query: 612 GEVPL----RLCQLQKLRLLDLSHNN 633
             +P     RL  L    L      N
Sbjct: 149 S-IPHGAFDRLSSLTHAYL----FGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 16/136 (11%)

Query: 456 EYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFI---GGIPESLSNCSSLQGLYISDND 512
           + L L +N +         +L  LK L L  N       G+ +SL+    L  L +  N 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ---LTVLDLGTNQ 99

Query: 513 ISGSIPT----WMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNG 568
           ++  +P+     + ++  L    M  N L   +P    +L +L  L L +N +   P +G
Sbjct: 100 LT-VLPSAVFDRLVHLKELF---MCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIP-HG 153

Query: 569 AFSKCSYLLTLDLCNN 584
           AF + S L    L  N
Sbjct: 154 AFDRLSSLTHAYLFGN 169

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 17/96 (17%)

Query: 424 FGDMNSLIYLDLSNNQLTGEIPEHLAMGCF----NLEYLLLSNNSLQ---GQLFSKKINL 476
           FG +  L+ L+L  NQLT  I        F    +++ L L  N ++    ++F     L
Sbjct: 50  FGRLPHLVKLELKRNQLT-GIEP----NAFEGASHIQELQLGENKIKEISNKMFLG---L 101

Query: 477 TKLKRLNLDGNHFIGGIPE-SLSNCSSLQGLYISDN 511
            +LK LNL  N  I  +   S  + +SL  L ++ N
Sbjct: 102 HQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 19/115 (16%)

Query: 384 LDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSS-FGDMNSLIYLDLSNNQLTG 442
           L ++ N+L       +   LP+L  L +  N     I  + F   + +  L L  N++  
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK- 91

Query: 443 EIPEHLAMGCF----NLEYLLLSNNSLQ----GQLFSKKINLTKLKRLNLDGNHF 489
           EI        F     L+ L L +N +     G  F    +L  L  LNL  N F
Sbjct: 92  EISN----KMFLGLHQLKTLNLYDNQISCVMPG-SFE---HLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 15/94 (15%)

Query: 432 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG---QLFSKKINLTKLKRLNLDGNH 488
            L L++N+L     + L     +L  L L  N L G     F      + ++ L L  N 
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG---ASHIQELQLGENK 89

Query: 489 FIGGIPE----SLSNCSSLQGLYISDNDISGSIP 518
            I  I       L     L+ L + DN IS  + 
Sbjct: 90  -IKEISNKMFLGLHQ---LKTLNLYDNQIS-CVM 118

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 552 EILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE 611
             L L+ N +     +G F +  +L+ L+L  N+L G  PN     S ++ L L  N  +
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 612 GEVPLRLC-QLQKLRLLDLSHN 632
            E+  ++   L +L+ L+L  N
Sbjct: 92  -EISNKMFLGLHQLKTLNLYDN 112

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 14/92 (15%)

Query: 52  ESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSL-----AGLSSLKNL 106
             L L+ N +   + ++GL     L +L  L+L  N      L+ +      G S ++ L
Sbjct: 32  TELLLNDNELGR-ISSDGL--FGRLPHLVKLELKRNQ-----LTGIEPNAFEGASHIQEL 83

Query: 107 SLAYNRLEGSINIEELDSLSNLEGLDMSDNEI 138
            L  N+++  I+ +    L  L+ L++ DN+I
Sbjct: 84  QLGENKIK-EISNKMFLGLHQLKTLNLYDNQI 114

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 9/98 (9%)

Query: 43  SLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNS-FNNSVLSSLAGLS 101
           +      +++++D + + I     + G + + GL  ++ + L       +  L  L+ L 
Sbjct: 55  TGPLDKYKIQAIDATDSCI----MSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE 110

Query: 102 ----SLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSD 135
               S+  + +          I  L    NL+ L +SD
Sbjct: 111 NLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD 148

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 16/100 (16%), Positives = 41/100 (41%), Gaps = 11/100 (11%)

Query: 419 SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSN------NSLQGQLFSK 472
            +P+   D   +  +D +++ +     +H+  G   +E + L          L+ +L   
Sbjct: 52  HLPTGPLDKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLE-RLSQL 109

Query: 473 KINLTKLKRLNLDGNHFIG--GIPESLSNCSSLQGLYISD 510
           +     +  + +     +   GI  +L +  +L+ L++SD
Sbjct: 110 ENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSD 148

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.4 bits (114), Expect = 6e-06
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 11/104 (10%)

Query: 48  FQQLESLDLSGNNI-----AGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAG--- 99
              LE L L                  L       NLK+L +      N V+        
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277

Query: 100 LSSLKNLSLAYNRL--EGSINI-EELDSLSNLEGLDMSDNEIDN 140
           L  L+ + ++   L  EG+  + + +D + +L+ ++M  N + +
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 2e-05
 Identities = 41/225 (18%), Positives = 77/225 (34%), Gaps = 33/225 (14%)

Query: 1   WVDESYSDCCQWQSVLCNATTSRVIA--IDLLSLNIASALYLNFSLFTPFQQLESLDLSG 58
           W D  + +     S +     S V+     L +L I     L+     P   L+SL++  
Sbjct: 146 WGDIDFEEQEI--SWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIIS 202

Query: 59  NNIAGCVENEGLEKL--SGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGS 116
             +     +  +E +  S L NL+ L L     +      +     L +           
Sbjct: 203 GGLP----DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD--------- 249

Query: 117 INIEELDSLSNLEGLDMSDNEIDNLVVPK--DYRGLRKLRFLDLSGLRIRD--GSKVLHS 172
                     NL+ L + D E  N+VV    +   L +L  +D+S   + D     +L  
Sbjct: 250 -------RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH 302

Query: 173 IGSFPSLKTLYLKSNNFAKTVTT--TQGLCELAHLQELYIDHNDF 215
           +     LK + +K N  +  +     + L     + +     +D+
Sbjct: 303 VDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEYDDDY 347

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.2 bits (98), Expect = 5e-04
 Identities = 11/83 (13%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 693 KGQPLESIHGLDLSCNKLIGEIPSRIGE---LIRIHTLNLSRNNLTGT----IPVTFSNL 745
                 ++  L +   +    +     E   L ++ T+++S   LT      +      +
Sbjct: 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKI 306

Query: 746 RQVESLDLSYNNLTGKIPPRLVE 768
           + ++ +++ YN L+ ++   L +
Sbjct: 307 KHLKFINMKYNYLSDEMKKELQK 329

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 24/121 (19%)

Query: 409 LTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF----NLEYLLLSNN- 463
           L +  N+        F ++ SL  L L  N+L       L  G F    +L YL LS N 
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-----LPNGVFNKLTSLTYLNLSTNQ 87

Query: 464 --SLQGQLFSKKINLTKLKRLNLDGNHFIGGIPE----SLSNCSSLQGLYISDNDISGSI 517
             SL   +F K   LT+LK L L+ N  +  +P+     L+    L+ L +  N +  S+
Sbjct: 88  LQSLPNGVFDK---LTQLKELALNTNQ-LQSLPDGVFDKLTQ---LKDLRLYQNQLK-SV 139

Query: 518 P 518
           P
Sbjct: 140 P 140

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 33/157 (21%)

Query: 456 EYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFI---GGIPESLSNCSSLQGLYISDND 512
            YL L  NSL+         LT L +L L GN       G+   L++   L  L +S N 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS---LTYLNLSTNQ 87

Query: 513 ISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSK 572
           +  S+P                          F +L  L+ L L+ N +   P +G F K
Sbjct: 88  LQ-SLP-----------------------NGVFDKLTQLKELALNTNQLQSLP-DGVFDK 122

Query: 573 CSYLLTLDLCNNRLNGNIPNWM-GRLSQLRYLILANN 608
            + L  L L  N+L  ++P+ +  RL+ L+Y+ L +N
Sbjct: 123 LTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 17/111 (15%)

Query: 409 LTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF----NLEYLLLSNNS 464
           L +  N         F  +  L  L LS NQ+       L  G F     L  L L  N 
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-----LPDGVFDKLTKLTILYLHENK 87

Query: 465 LQ---GQLFSKKINLTKLKRLNLDGNHFIGGIPE-SLSNCSSLQGLYISDN 511
           LQ     +F K   LT+LK L LD N  +  +P+      +SLQ +++  N
Sbjct: 88  LQSLPNGVFDK---LTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 17/88 (19%)

Query: 432 YLDLSNNQLTGEIPEHLAMGCF----NLEYLLLSNNSLQ---GQLFSKKINLTKLKRLNL 484
            L L+NNQ+T      L  G F    NL+ L  ++N L      +F K   LT+L +L+L
Sbjct: 37  RLWLNNNQITK-----LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK---LTQLTQLDL 88

Query: 485 DGNHFIGGIPE-SLSNCSSLQGLYISDN 511
           + NH +  IP  +  N  SL  +Y+ +N
Sbjct: 89  NDNH-LKSIPRGAFDNLKSLTHIYLYNN 115

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 17/88 (19%)

Query: 432 YLDLSNNQLTGEIPEHLAMGCF----NLEYLLLSNNSLQ---GQLFSKKINLTKLKRLNL 484
            L L +NQ+T      L  G F     L  L L NN L      +F K   LT+L +L+L
Sbjct: 34  VLYLYDNQITK-----LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK---LTQLTQLSL 85

Query: 485 DGNHFIGGIPE-SLSNCSSLQGLYISDN 511
           + N  +  IP  +  N  SL  +++ +N
Sbjct: 86  NDNQ-LKSIPRGAFDNLKSLTHIWLLNN 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	892
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.55
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.55
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.43
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.26
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.24
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.2
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.18
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.18
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.17
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.93
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.84
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.79
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.71
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.71
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.45
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.28
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.24
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.89
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.86
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.11
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.02
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.67
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.62

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=9.6e-87  Score=801.65  Aligned_cols=691  Identities=32%  Similarity=0.468  Sum_probs=475.6

Q ss_pred             CCCCCCCCCcccceeEecCCCCcEEEEEcCCCccccccccCcccCCCCCCCcEEeCCCCccCCccccccccccCCCCCCC
Q 044158            1 WVDESYSDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLK   80 (892)
Q Consensus         1 w~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~s~f~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~   80 (892)
                      |+  .++|||+|+||+|+  +|||+.|||++..+.|....-+..|.++++|+.++++.+.+...+     ..+.++++|+
T Consensus        33 W~--~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~-----~~~~~l~~L~  103 (768)
T 3rgz_A           33 WS--SNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-----SGFKCSASLT  103 (768)
T ss_dssp             CC--TTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECC-----CCCCCCTTCC
T ss_pred             CC--CCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCc-----hhhccCCCCC
Confidence            76  46799999999998  699999999998877752212356788899999999988774322     3588999999


Q ss_pred             EEeCCCCCCCCcccc--cccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCcccccc--ccCCCCCcEE
Q 044158           81 FLDLSHNSFNNSVLS--SLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKD--YRGLRKLRFL  156 (892)
Q Consensus        81 ~L~Ls~n~i~~~~~~--~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~--~~~l~~L~~L  156 (892)
                      +|+|++|.+++.+|.  .++++++|++|++++|.+.+.+|...+.++++|++|++++|.+++..+...  +.++++|++|
T Consensus       104 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L  183 (768)
T 3rgz_A          104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL  183 (768)
T ss_dssp             EEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEE
T ss_pred             EEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEE
Confidence            999999999988888  999999999999999999988777445899999999999999987653321  7889999999


Q ss_pred             eCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCccCccccccCCCCCcEEeCCC
Q 044158          157 DLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPD  236 (892)
Q Consensus       157 ~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  236 (892)
                      ++++|.+.+.  .  .+..+++|++|++++|.+.+..+.   ++.+++|++|++++|.+++.+|..++++++|++|++++
T Consensus       184 ~Ls~n~l~~~--~--~~~~l~~L~~L~Ls~n~l~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  256 (768)
T 3rgz_A          184 AISGNKISGD--V--DVSRCVNLEFLDVSSNNFSTGIPF---LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS  256 (768)
T ss_dssp             ECCSSEEESC--C--BCTTCTTCCEEECCSSCCCSCCCB---CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred             ECCCCccccc--C--CcccCCcCCEEECcCCcCCCCCcc---cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence            9999998864  2  237889999999999998876653   78889999999999999988898999999999999999


Q ss_pred             CCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCccccccccccccCCCCCcceeEEEcCCCCC
Q 044158          237 NQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGD  316 (892)
Q Consensus       237 n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  316 (892)
                      |.+++.+ +..  .+++|++|++++|.+++.++......++                                       
T Consensus       257 n~l~~~~-~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~---------------------------------------  294 (768)
T 3rgz_A          257 NQFVGPI-PPL--PLKSLQYLSLAENKFTGEIPDFLSGACD---------------------------------------  294 (768)
T ss_dssp             SCCEESC-CCC--CCTTCCEEECCSSEEEESCCCCSCTTCT---------------------------------------
T ss_pred             CcccCcc-Ccc--ccCCCCEEECcCCccCCccCHHHHhhcC---------------------------------------
Confidence            9888755 222  6777888888887776544432222223                                       


Q ss_pred             CCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCC-CCCCCCccEEEccCCcCCCCC
Q 044158          317 SDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLP-TRSRKNIIALDISYNKLQGHI  395 (892)
Q Consensus       317 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~l~~n~l~~~i  395 (892)
                                    +|++|++++|.+.+.+|.. ++++++|++|++++|.+++..+.. +..+++|++|++++|++++.+
T Consensus       295 --------------~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~  359 (768)
T 3rgz_A          295 --------------TLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL  359 (768)
T ss_dssp             --------------TCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECC
T ss_pred             --------------cCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccc
Confidence                          3333344444443333333 334444444444444443322222 334444444444444444444


Q ss_pred             chhhhhcCCCCcEEECcCCcCCccCchhccC--CCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccc
Q 044158          396 PVEIGKVLPNLGFLTISFNAFNGSIPSSFGD--MNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKK  473 (892)
Q Consensus       396 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~--l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  473 (892)
                      |..+....++|++|++++|.+.+.+|..+..  +++|++|++++|++++.+|..+ ..+++|++|++++|++++.+|..+
T Consensus       360 p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l  438 (768)
T 3rgz_A          360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSL  438 (768)
T ss_dssp             CTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSEEESCCCGGG
T ss_pred             cHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCcccCcccHHH
Confidence            5444442225555555555555544444444  4455555555555554444443 245555555555555555555555


Q ss_pred             cccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcE
Q 044158          474 INLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEI  553 (892)
Q Consensus       474 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  553 (892)
                      ..+++|+.|++++|++.+.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.+++.+++|++
T Consensus       439 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  518 (768)
T 3rgz_A          439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI  518 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             EeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccc----------------------ccc
Q 044158          554 LDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANN----------------------NFE  611 (892)
Q Consensus       554 L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n----------------------~l~  611 (892)
                      |++++|++++ .+|..+..+++|++|++++|+++|.+|..+.....+..+++..+                      .+.
T Consensus       519 L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  597 (768)
T 3rgz_A          519 LKLSNNSFSG-NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ  597 (768)
T ss_dssp             EECCSSCCEE-ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred             EECCCCcccC-cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccc
Confidence            5555555554 44555555555555555555555555555444433333322221                      122


Q ss_pred             ccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccc
Q 044158          612 GEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYT  691 (892)
Q Consensus       612 ~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (892)
                      +..+..+..++.++.++++.|.++|.+|..+..                                               
T Consensus       598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~-----------------------------------------------  630 (768)
T 3rgz_A          598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN-----------------------------------------------  630 (768)
T ss_dssp             TCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS-----------------------------------------------
T ss_pred             cccchhhhccccccccccccceecccCchhhhc-----------------------------------------------
Confidence            333444444455555555555555555544432                                               


Q ss_pred             cCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCC
Q 044158          692 YKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNA  771 (892)
Q Consensus       692 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~  771 (892)
                           ++.|+.||+++|+++|.+|.+++++++|+.|+|++|+++|.+|..|+++++|+.||||+|+++|.||..+.++++
T Consensus       631 -----l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~  705 (768)
T 3rgz_A          631 -----NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM  705 (768)
T ss_dssp             -----SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred             -----cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence                 447899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEccCCcccccCCccccccCCCCcccccCCCCCCCCCCCCCCCCCC
Q 044158          772 LAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENR  820 (892)
Q Consensus       772 L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~l~~~c~~~~  820 (892)
                      |++||+++|+++|.||. .+++.+|...+|.|||++||.|+. .|....
T Consensus       706 L~~L~ls~N~l~g~iP~-~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          706 LTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLP-RCDPSN  752 (768)
T ss_dssp             CSEEECCSSEEEEECCS-SSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred             CCEEECcCCcccccCCC-chhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence            99999999999999998 789999999999999999999987 786543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.2e-72  Score=676.73  Aligned_cols=657  Identities=29%  Similarity=0.435  Sum_probs=449.2

Q ss_pred             CCCcEEeCCCCccCCc---cccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCCh-hhhcC
Q 044158           49 QQLESLDLSGNNIAGC---VENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINI-EELDS  124 (892)
Q Consensus        49 ~~L~~L~Ls~n~i~~~---~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~-~~l~~  124 (892)
                      .+++.|||+++.+.+.   .+    ..+.++++|+.++++.+.+. ..|+.|+++++|++|+|++|.+.+.+|. ..+++
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~----~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~  124 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVS----SSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS  124 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHH----HHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGG
T ss_pred             CcEEEEECCCCCcCCccCccC----hhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhC
Confidence            4677888888877764   22    34677788888888877764 2457788888888888888888766653 25778


Q ss_pred             CCCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCcccccc---ccCCCCCCEEECCCCCCCCccCCcccccC
Q 044158          125 LSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHS---IGSFPSLKTLYLKSNNFAKTVTTTQGLCE  201 (892)
Q Consensus       125 l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~~l~~  201 (892)
                      +++|++|++++|.+.+..+...+.++++|++|++++|.+++.  .+..   +.++++|++|++++|.+.+..+    +..
T Consensus       125 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~  198 (768)
T 3rgz_A          125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVD----VSR  198 (768)
T ss_dssp             CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEE--THHHHHHTTCCTTCCEEECCSSEEESCCB----CTT
T ss_pred             CCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCc--CChhhhhhccCCCCCEEECCCCcccccCC----ccc
Confidence            888888888888877665554347788888888888887764  3333   6677778888887777765443    356


Q ss_pred             CCCCcEEEccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccE
Q 044158          202 LAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKI  281 (892)
Q Consensus       202 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  281 (892)
                      +++|++|++++|.+.+.+|. ++++++|++|++++|.+++.+ +..+..+++|++|++++|.+.+.++.           
T Consensus       199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~-----------  265 (768)
T 3rgz_A          199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPP-----------  265 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH-HHHTTTCSSCCEEECCSSCCEESCCC-----------
T ss_pred             CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc-cHHHhcCCCCCEEECCCCcccCccCc-----------
Confidence            77777777777777766665 777777777777777776544 55566666666666666655432221           


Q ss_pred             EEccCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEE
Q 044158          282 FHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSII  361 (892)
Q Consensus       282 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~  361 (892)
                                                                 .  .+++|++|++++|.+.+.+|..+...+       
T Consensus       266 -------------------------------------------~--~l~~L~~L~L~~n~l~~~ip~~~~~~~-------  293 (768)
T 3rgz_A          266 -------------------------------------------L--PLKSLQYLSLAENKFTGEIPDFLSGAC-------  293 (768)
T ss_dssp             -------------------------------------------C--CCTTCCEEECCSSEEEESCCCCSCTTC-------
T ss_pred             -------------------------------------------c--ccCCCCEEECcCCccCCccCHHHHhhc-------
Confidence                                                       0  223344444444444444444322223       


Q ss_pred             ccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchh-ccCCCCCcEEECcCCcC
Q 044158          362 LANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSS-FGDMNSLIYLDLSNNQL  440 (892)
Q Consensus       362 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~l  440 (892)
                                       ++|++|++++|.+++.+|..+.. +++|++|++++|.+.+.+|.. +..+++|++|++++|++
T Consensus       294 -----------------~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l  355 (768)
T 3rgz_A          294 -----------------DTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF  355 (768)
T ss_dssp             -----------------TTCSEEECCSSEEEECCCGGGGG-CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred             -----------------CcCCEEECcCCcCCCccchHHhc-CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence                             55555555555555555555443 566666666666666555544 66666666666666666


Q ss_pred             ccccchhHhhcCccCcEEEccCCcccccccccccc--cCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCcc
Q 044158          441 TGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKIN--LTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIP  518 (892)
Q Consensus       441 ~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  518 (892)
                      ++.+|..+....++|++|++++|.+++.++..+..  +++|++|++++|++++.+|..+.++++|++|++++|++++.+|
T Consensus       356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  435 (768)
T 3rgz_A          356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP  435 (768)
T ss_dssp             EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred             CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc
Confidence            66666555422226666666666666666655554  6667777777777776777777777777777777777777777


Q ss_pred             ccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCC
Q 044158          519 TWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLS  598 (892)
Q Consensus       519 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~  598 (892)
                      ..++.+++|+.|++++|.+++.+|..+..+++|++|++++|++++ .+|..+.++++|++|++++|++++.+|.+++.++
T Consensus       436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~  514 (768)
T 3rgz_A          436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE  514 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC-cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence            777777777777777777777777777777777777777777776 5677777777777888887777777777777778


Q ss_pred             CCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCc
Q 044158          599 QLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEK  678 (892)
Q Consensus       599 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (892)
                      +|++|++++|+++|.+|..++.+++|++|++++|+++|.+|.++.............     ...+.+............
T Consensus       515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  589 (768)
T 3rgz_A          515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA-----GKRYVYIKNDGMKKECHG  589 (768)
T ss_dssp             TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC-----SCEEEEEECCSCCTTCCS
T ss_pred             CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc-----cccccccccccccccccc
Confidence            888888888888777777777788888888888888887877766543221111000     000000000000000000


Q ss_pred             ceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcC
Q 044158          679 ETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNL  758 (892)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l  758 (892)
                      ........+. .......+..+..++++.|.+.|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|||++|++
T Consensus       590 ~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  668 (768)
T 3rgz_A          590 AGNLLEFQGI-RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI  668 (768)
T ss_dssp             SEEEEECTTC-CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             cccccccccc-cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCcc
Confidence            0000000000 000011234566788999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCccccCCCCCCEEEccCCcccccCCccccccCCCCcccccCCCC
Q 044158          759 TGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPF  806 (892)
Q Consensus       759 ~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~  806 (892)
                      +|.||..+++++.|++||+++|+++|.||..++.+..+...++++|+.
T Consensus       669 ~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred             CCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence            999999999999999999999999999999889999999999999875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.2e-59  Score=558.08  Aligned_cols=582  Identities=23%  Similarity=0.239  Sum_probs=332.3

Q ss_pred             CCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEE
Q 044158           77 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFL  156 (892)
Q Consensus        77 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L  156 (892)
                      +++++|+|++|.+++..+..|+++++|++|++++|.+++ +++..++++++|++|++++|.++++. +..|+++++|++|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L  102 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTEL  102 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCccCccC-hhhhccCCCCCEE
Confidence            345555555555555444455555555555555555543 22234555555555555555555432 2235555555555


Q ss_pred             eCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCccCcccccc--CCCCCcEEeC
Q 044158          157 DLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLA--NLTSLRVLHV  234 (892)
Q Consensus       157 ~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L  234 (892)
                      ++++|.++..  .+..++++++|++|++++|.+.+..+.  .+..+++|++|++++|.+++..+..+.  .+++|+.|++
T Consensus       103 ~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L  178 (680)
T 1ziw_A          103 HLMSNSIQKI--KNNPFVKQKNLITLDLSHNGLSSTKLG--TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL  178 (680)
T ss_dssp             ECCSSCCCCC--CSCTTTTCTTCCEEECCSSCCSCCCCC--SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred             ECCCCccCcc--ChhHccccCCCCEEECCCCcccccCch--hhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence            5555555443  334455555666666666555544433  455666666666666666665555443  3466777777


Q ss_pred             CCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCccccccccccccCCCCCcceeEEEcCCC
Q 044158          235 PDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDH  314 (892)
Q Consensus       235 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  314 (892)
                      ++|.+++.. +..+..+++|+.|++.++.+.....                                             
T Consensus       179 ~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~---------------------------------------------  212 (680)
T 1ziw_A          179 SSNQIKEFS-PGCFHAIGRLFGLFLNNVQLGPSLT---------------------------------------------  212 (680)
T ss_dssp             TTCCCCCBC-TTGGGGSSEECEEECTTCCCHHHHH---------------------------------------------
T ss_pred             CCCcccccC-hhhhhhhhhhhhhhccccccChhhH---------------------------------------------
Confidence            777665532 5556666666666665554331000                                             


Q ss_pred             CCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCC--CccEEEccCCcCC
Q 044158          315 GDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRK--NIIALDISYNKLQ  392 (892)
Q Consensus       315 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~l~~n~l~  392 (892)
                                                   ..++..  -..++|++|++++|.+++..+..+..++  +|++|++++|+++
T Consensus       213 -----------------------------~~~~~~--l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~  261 (680)
T 1ziw_A          213 -----------------------------EKLCLE--LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN  261 (680)
T ss_dssp             -----------------------------HHHHHH--HTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred             -----------------------------HHHHHH--hhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence                                         000000  0124455555555555544444444443  2666666666666


Q ss_pred             CCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccc--------cchhHhhcCccCcEEEccCCc
Q 044158          393 GHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE--------IPEHLAMGCFNLEYLLLSNNS  464 (892)
Q Consensus       393 ~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~--------i~~~~~~~~~~L~~L~L~~n~  464 (892)
                      +..|..+ ..+++|++|++++|.+.+..|..|.++++|+.|++++|...+.        ++...+..+++|++|++++|.
T Consensus       262 ~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~  340 (680)
T 1ziw_A          262 VVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND  340 (680)
T ss_dssp             EECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred             ccCcccc-cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence            3333333 3366777777777777766666777777777777776544332        122234456677777777777


Q ss_pred             ccccccccccccCCCcEEeecCccCcCCC--CcccccC--CCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCC
Q 044158          465 LQGQLFSKKINLTKLKRLNLDGNHFIGGI--PESLSNC--SSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGP  540 (892)
Q Consensus       465 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~--~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~  540 (892)
                      +++..+..|.++++|++|++++|.+....  +..|..+  ++|+.|++++|++++..|..+..+++|+.|++++|.+++.
T Consensus       341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  420 (680)
T 1ziw_A          341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE  420 (680)
T ss_dssp             BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE
T ss_pred             cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccc
Confidence            77666666667777777777776643221  1223222  4677777777777766666777777777777777777655


Q ss_pred             Cc-ccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccC--ccCChhhhcCCCCCEEecccccccccCCcc
Q 044158          541 IP-SEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLN--GNIPNWMGRLSQLRYLILANNNFEGEVPLR  617 (892)
Q Consensus       541 ~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  617 (892)
                      +| ..+..+++|++|++++|++++ ..+..|..+++|+.|++++|.+.  +.+|..+..+++|++|++++|++++..+..
T Consensus       421 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~  499 (680)
T 1ziw_A          421 LTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM  499 (680)
T ss_dssp             CCSGGGTTCTTCCEEECCSCSEEE-CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cCcccccCcccccEEecCCCCcce-eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh
Confidence            44 466677777777777777665 33556667777777777777665  456667777777777777777777666666


Q ss_pred             ccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCc
Q 044158          618 LCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPL  697 (892)
Q Consensus       618 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  697 (892)
                      +..+++|++|++++|++++..+..+....                                            ......+
T Consensus       500 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~--------------------------------------------~~~~~~l  535 (680)
T 1ziw_A          500 LEGLEKLEILDLQHNNLARLWKHANPGGP--------------------------------------------IYFLKGL  535 (680)
T ss_dssp             TTTCTTCCEEECCSSCCGGGGSTTSTTSC--------------------------------------------CCTTTTC
T ss_pred             hccccccCEEeCCCCCccccchhhccCCc--------------------------------------------chhhcCC
Confidence            77777777777777776632111110000                                            0000123


Q ss_pred             CccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCcccc-CCCCCCEEE
Q 044158          698 ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLV-ELNALAVFT  776 (892)
Q Consensus       698 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~-~l~~L~~l~  776 (892)
                      ++|+.|++++|+++...+..|.++++|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|+.++
T Consensus       536 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~  615 (680)
T 1ziw_A          536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD  615 (680)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEE
T ss_pred             CCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEE
Confidence            3566666666666633333466666666666666666655555556666666666666666655555554 455666666


Q ss_pred             ccCCcccccCC
Q 044158          777 VAHNNLSGKIP  787 (892)
Q Consensus       777 ls~N~l~g~ip  787 (892)
                      +++|++.+..+
T Consensus       616 l~~N~~~c~c~  626 (680)
T 1ziw_A          616 MRFNPFDCTCE  626 (680)
T ss_dssp             CTTCCCCBCCC
T ss_pred             ccCCCcccCCc
Confidence            66666655544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=9.2e-58  Score=545.49  Aligned_cols=576  Identities=22%  Similarity=0.232  Sum_probs=411.4

Q ss_pred             CCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCC
Q 044158           49 QQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNL  128 (892)
Q Consensus        49 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L  128 (892)
                      +++++|+|++|.+++.+.    ..|.++++|++|+|++|.+++..|.+|+++++|++|++++|.++ .+|...|+++++|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L   99 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPA----ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNL   99 (680)
T ss_dssp             TTCSEEECCSSCCCCCCG----GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             CCCcEEECCCCCCCCcCH----HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCC
Confidence            789999999999987665    35889999999999999999999999999999999999999998 6787689999999


Q ss_pred             CEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEE
Q 044158          129 EGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQEL  208 (892)
Q Consensus       129 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L  208 (892)
                      ++|++++|.++++. +..|+++++|++|++++|.+++.  .+..++.+++|++|++++|.+.+..+.......+++|++|
T Consensus       100 ~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L  176 (680)
T 1ziw_A          100 TELHLMSNSIQKIK-NNPFVKQKNLITLDLSHNGLSST--KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL  176 (680)
T ss_dssp             SEEECCSSCCCCCC-SCTTTTCTTCCEEECCSSCCSCC--CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred             CEEECCCCccCccC-hhHccccCCCCEEECCCCccccc--CchhhcccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence            99999999998765 34599999999999999999876  6677889999999999999988766542223456899999


Q ss_pred             EccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcc---cccccCcEEeccCccccCCCCchhhcCCCCccEEEcc
Q 044158          209 YIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPL---MHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGR  285 (892)
Q Consensus       209 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~  285 (892)
                      ++++|.+.+..|..+..+++|+.|++.++.+.+.. ...+   ...++|+.|++++|.+.+..+                
T Consensus       177 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~~~l~~~~L~~L~L~~n~l~~~~~----------------  239 (680)
T 1ziw_A          177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL-TEKLCLELANTSIRNLSLSNSQLSTTSN----------------  239 (680)
T ss_dssp             ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHH-HHHHHHHHTTSCCCEEECTTSCCCEECT----------------
T ss_pred             ECCCCcccccChhhhhhhhhhhhhhccccccChhh-HHHHHHHhhhccccEEEccCCcccccCh----------------
Confidence            99999999999999999999999999999876421 1111   023567777777776553221                


Q ss_pred             CccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCC--CCccEEEccCCcCccccchhhhhcCCCCCEEEcc
Q 044158          286 ENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQ--HHLEFVIISDVNMRGEFPSWLLENNTNLRSIILA  363 (892)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~  363 (892)
                                                            .++..+  ++|++|++++|.+.+..|.. ++.+++|++|+++
T Consensus       240 --------------------------------------~~~~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~  280 (680)
T 1ziw_A          240 --------------------------------------TTFLGLKWTNLTMLDLSYNNLNVVGNDS-FAWLPQLEYFFLE  280 (680)
T ss_dssp             --------------------------------------TTTGGGGGSCCCEEECTTSCCCEECTTT-TTTCTTCCEEECC
T ss_pred             --------------------------------------hHhhccCcCCCCEEECCCCCcCccCccc-ccCcccccEeeCC
Confidence                                                  111111  23566666666655544444 5667777777777


Q ss_pred             CCcCcCCCCCCCCCCCCccEEEccCCcCCCCCc--------hhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEEC
Q 044158          364 NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIP--------VEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDL  435 (892)
Q Consensus       364 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~--------~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L  435 (892)
                      +|.+++..+..+..+++|++|++++|...+.++        ...+..+++|++|++++|.+.+..+..|.++++|++|++
T Consensus       281 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  360 (680)
T 1ziw_A          281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL  360 (680)
T ss_dssp             SCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred             CCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence            777777666677777777777777665443221        112223455555555555555554555555555555555


Q ss_pred             cCCcCcc-ccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCC
Q 044158          436 SNNQLTG-EIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDIS  514 (892)
Q Consensus       436 ~~n~l~~-~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  514 (892)
                      ++|.+.. .++...+..+                      ..++|+.|++++|++.+..|..|..+++|++|++++|+++
T Consensus       361 s~n~~~~~~l~~~~f~~~----------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  418 (680)
T 1ziw_A          361 SNSFTSLRTLTNETFVSL----------------------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG  418 (680)
T ss_dssp             TTCBSCCCEECTTTTGGG----------------------TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred             CCCchhhhhcchhhhccc----------------------ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence            5554321 1221111111                      1135666666666665555555666666666666666665


Q ss_pred             CCcc-ccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCC-cccccccCCCCccEEEccCCccCccCCh
Q 044158          515 GSIP-TWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR-PLNGAFSKCSYLLTLDLCNNRLNGNIPN  592 (892)
Q Consensus       515 ~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~p~  592 (892)
                      +.+| ..+..+++|++|++++|++.+..+..|..+++|++|++++|.+++. ..|..+..+++|++|++++|++++..+.
T Consensus       419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~  498 (680)
T 1ziw_A          419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD  498 (680)
T ss_dssp             EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence            4333 4566666666666666666666666666667777777777766532 3456677777777777777777766666


Q ss_pred             hhhcCCCCCEEecccccccccCC--------ccccCCCCCCEEEcCCCcCCCCCCc-cccCCcccccccccccccccccc
Q 044158          593 WMGRLSQLRYLILANNNFEGEVP--------LRLCQLQKLRLLDLSHNNFSGQIPP-CLDNTSLHREEGYYDLIPTYRNE  663 (892)
Q Consensus       593 ~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~g~~p~-~~~~~~~~~~~~~~~~~~~~~~~  663 (892)
                      .+..+++|++|++++|++++..+        ..+..+++|++|+|++|+++ .+|. .+..                   
T Consensus       499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~-------------------  558 (680)
T 1ziw_A          499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKD-------------------  558 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTT-------------------
T ss_pred             hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHccc-------------------
Confidence            67777777777777777765321        23678899999999999988 4553 2332                   


Q ss_pred             cccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCcccccccc
Q 044158          664 YDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFS  743 (892)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  743 (892)
                                                       +++|+.||+++|++++..+..|..+++|+.|+|++|++++.+|..++
T Consensus       559 ---------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  605 (680)
T 1ziw_A          559 ---------------------------------LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG  605 (680)
T ss_dssp             ---------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred             ---------------------------------ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence                                             34688999999999977777789999999999999999999888887


Q ss_pred             -CCCCCCEEECCCCcCcccCC
Q 044158          744 -NLRQVESLDLSYNNLTGKIP  763 (892)
Q Consensus       744 -~l~~L~~LdLs~N~l~g~ip  763 (892)
                       .+++|+.|++++|.+.+..+
T Consensus       606 ~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          606 PAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             HHHTTCSEEECTTCCCCBCCC
T ss_pred             ccccccCEEEccCCCcccCCc
Confidence             78999999999999997654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.1e-53  Score=499.50  Aligned_cols=534  Identities=22%  Similarity=0.219  Sum_probs=262.0

Q ss_pred             CEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEeCC
Q 044158           80 KFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLS  159 (892)
Q Consensus        80 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~  159 (892)
                      +.++.++..++ .+|..+.  +++++|++++|.++ .+++..|.++++|++|++++|.+.++.+ ..|.++++|++|+++
T Consensus        15 ~~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls   89 (606)
T 3t6q_A           15 KTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLT   89 (606)
T ss_dssp             TEEECTTSCCS-SCCTTSC--TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECT
T ss_pred             ceEECCCCCcc-cCcCCCC--CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeCh-hhccCccccCeeeCC
Confidence            45666666665 3455444  25677777777776 3444466777777777777776665432 336666666666666


Q ss_pred             CCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCccCccccccCCCCCcEEeCCCCCc
Q 044158          160 GLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQL  239 (892)
Q Consensus       160 ~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  239 (892)
                      +|.++..  .+..++.+++|++|++++|.+.+..+.  .+..+++|++|++++|.+.+.....+..+++|++|++++|.+
T Consensus        90 ~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~~l~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  165 (606)
T 3t6q_A           90 ANPLIFM--AETALSGPKALKHLFFIQTGISSIDFI--PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI  165 (606)
T ss_dssp             TCCCSEE--CTTTTSSCTTCCEEECTTSCCSCGGGS--CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred             CCccccc--ChhhhcccccccEeeccccCcccCCcc--hhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc
Confidence            6665543  344455555555555555544443222  234444444444444444332212222233333333333333


Q ss_pred             ccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCccccccccccccCCCCCcceeEEEcCCCCCCCC
Q 044158          240 TENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDG  319 (892)
Q Consensus       240 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  319 (892)
                      ++.. +..                                                                        
T Consensus       166 ~~~~-~~~------------------------------------------------------------------------  172 (606)
T 3t6q_A          166 HYLS-KED------------------------------------------------------------------------  172 (606)
T ss_dssp             CEEC-HHH------------------------------------------------------------------------
T ss_pred             cccC-hhh------------------------------------------------------------------------
Confidence            2210 111                                                                        


Q ss_pred             CCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCC--EEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCch
Q 044158          320 GTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLR--SIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPV  397 (892)
Q Consensus       320 ~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~--~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~  397 (892)
                                                     ++.+++|+  .|++++|.+++..+..+.. .+|+.|++++|.   .++.
T Consensus       173 -------------------------------~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~  217 (606)
T 3t6q_A          173 -------------------------------MSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLV  217 (606)
T ss_dssp             -------------------------------HHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHH
T ss_pred             -------------------------------hhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHH
Confidence                                           33344444  4444444444433333222 356666666664   2232


Q ss_pred             hhhhcCCCCcEEECcCCcCC-----ccCchhccCCC--CCcEEECcCCcCccccchhHhhcCccCcEEEccCCccccccc
Q 044158          398 EIGKVLPNLGFLTISFNAFN-----GSIPSSFGDMN--SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLF  470 (892)
Q Consensus       398 ~~~~~l~~L~~L~L~~n~~~-----~~~p~~~~~l~--~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~  470 (892)
                      .+. .+.++....+....+.     ...+..+..+.  +|+.|++++|.++ .++...+..+++|++|++++|+++ .+|
T Consensus       218 ~~~-~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp  294 (606)
T 3t6q_A          218 IFK-GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELP  294 (606)
T ss_dssp             HHH-HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCC
T ss_pred             Hhh-hccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCC
Confidence            222 2444433333222111     11112222221  4555555555555 344444445555555555555555 344


Q ss_pred             ccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccc-cccCCCCCcEEECCCCcccCCC--cccccC
Q 044158          471 SKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPT-WMGNISFLDAIIMPDNHLEGPI--PSEFCQ  547 (892)
Q Consensus       471 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~--~~~~~~  547 (892)
                      ..+..+++|++|++++|++.+..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++..  +..+..
T Consensus       295 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  374 (606)
T 3t6q_A          295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN  374 (606)
T ss_dssp             SSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTT
T ss_pred             hhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhccc
Confidence            4555555555555555555554455555555555555555555543332 3555555555555555555433  444555


Q ss_pred             CCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCCh-hhhcCCCCCEEecccccccccCCccccCCCCCCE
Q 044158          548 LDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPN-WMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRL  626 (892)
Q Consensus       548 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  626 (892)
                      +++|++|++++|++++ ..+..+..+++|++|++++|++.+..|. .+..+++|++|++++|.+++..|..+..+++|++
T Consensus       375 l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  453 (606)
T 3t6q_A          375 LSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH  453 (606)
T ss_dssp             CTTCCEEECCSCSCEE-ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred             CCCCCEEECCCCcCCc-CCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence            5555555555555544 2344455555555555555555544332 3455555555555555555555555555555555


Q ss_pred             EEcCCCcCCCCC-C--ccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCcccee
Q 044158          627 LDLSHNNFSGQI-P--PCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGL  703 (892)
Q Consensus       627 L~Ls~N~l~g~~-p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  703 (892)
                      |++++|++++.. |  ..+.                                                    .+++|+.|
T Consensus       454 L~L~~n~l~~~~~~~~~~~~----------------------------------------------------~l~~L~~L  481 (606)
T 3t6q_A          454 LNLQGNHFPKGNIQKTNSLQ----------------------------------------------------TLGRLEIL  481 (606)
T ss_dssp             EECTTCBCGGGEECSSCGGG----------------------------------------------------GCTTCCEE
T ss_pred             EECCCCCCCccccccchhhc----------------------------------------------------cCCCccEE
Confidence            555555554311 0  0011                                                    12245555


Q ss_pred             eccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCccc
Q 044158          704 DLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS  783 (892)
Q Consensus       704 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~  783 (892)
                      ++++|++++..|..|+.+++|+.|+|++|++++.+|..+.++++| .||+++|++++.+|..+..+++|+.+++++|+++
T Consensus       482 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  560 (606)
T 3t6q_A          482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD  560 (606)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred             ECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence            555555555555555555555555555555555555555555555 5555555555555555555555555555555555


Q ss_pred             ccCC
Q 044158          784 GKIP  787 (892)
Q Consensus       784 g~ip  787 (892)
                      +.++
T Consensus       561 c~c~  564 (606)
T 3t6q_A          561 CTCS  564 (606)
T ss_dssp             CSGG
T ss_pred             ccCC
Confidence            4443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.2e-53  Score=499.41  Aligned_cols=523  Identities=20%  Similarity=0.219  Sum_probs=349.6

Q ss_pred             CCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEe
Q 044158           78 NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLD  157 (892)
Q Consensus        78 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~  157 (892)
                      ++++|+|++|.+++..|..|+++++|++|++++|.+.+ +++..|.++++|++|++++|.+++..+ ..|+++++|++|+
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~  111 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLF  111 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTCCEEE
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCCCCcccccCh-hhhcccccccEee
Confidence            34444444444444444444455555555555544442 222244455555555555554444322 2355555555555


Q ss_pred             CCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCccCccccccCCCCCc--EEeCC
Q 044158          158 LSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLR--VLHVP  235 (892)
Q Consensus       158 L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~L~  235 (892)
                      +++|.++..  .+..++.+++|++|++++|.+.+....  .+..+++|++|++++|.+.+..+..++.+++|+  .|+++
T Consensus       112 L~~n~i~~l--~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~  187 (606)
T 3t6q_A          112 FIQTGISSI--DFIPLHNQKTLESLYLGSNHISSIKLP--KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN  187 (606)
T ss_dssp             CTTSCCSCG--GGSCCTTCTTCCEEECCSSCCCCCCCC--TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred             ccccCcccC--CcchhccCCcccEEECCCCcccccCcc--cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecC
Confidence            555555443  233455566666666666665543222  234477788888888877777777777888887  78888


Q ss_pred             CCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCccccccccccccCCCCCcceeEEEcCCCC
Q 044158          236 DNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHG  315 (892)
Q Consensus       236 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  315 (892)
                      +|.+.+.. +..+ ...+|++|++++|...    ...+..+..++                                   
T Consensus       188 ~n~l~~~~-~~~~-~~~~L~~L~l~~~~~~----~~~~~~l~~~~-----------------------------------  226 (606)
T 3t6q_A          188 GNDIAGIE-PGAF-DSAVFQSLNFGGTQNL----LVIFKGLKNST-----------------------------------  226 (606)
T ss_dssp             TCCCCEEC-TTTT-TTCEEEEEECTTCSCH----HHHHHHTTTCE-----------------------------------
T ss_pred             CCccCccC-hhHh-hhccccccccCCchhH----HHHhhhccccc-----------------------------------
Confidence            88876632 3333 2345666666655310    01111111111                                   


Q ss_pred             CCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCC
Q 044158          316 DSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHI  395 (892)
Q Consensus       316 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i  395 (892)
                                                                 ...+.-..+.+           +...     .+.+..
T Consensus       227 -------------------------------------------l~~l~~~~~~~-----------~~~~-----~i~~~~  247 (606)
T 3t6q_A          227 -------------------------------------------IQSLWLGTFED-----------MDDE-----DISPAV  247 (606)
T ss_dssp             -------------------------------------------EEEEECCCCTT-----------SCCC-----CCCGGG
T ss_pred             -------------------------------------------hhheechhhcc-----------cccc-----ccChhH
Confidence                                                       11110000000           0000     000011


Q ss_pred             chhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccc
Q 044158          396 PVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKIN  475 (892)
Q Consensus       396 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  475 (892)
                      ...+..  .+|+.|++++|.+.+..+..|+.+++|++|++++|+++ .+|..+ ..+++|++|++++|.+++..+..+..
T Consensus       248 ~~~l~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~  323 (606)
T 3t6q_A          248 FEGLCE--MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASN  323 (606)
T ss_dssp             GGGGGG--SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGG
T ss_pred             hchhhc--CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchhhhhc
Confidence            111111  25666666666666666666666777777777777766 666554 45677777777777777666777777


Q ss_pred             cCCCcEEeecCccCcCCCCc-ccccCCCCcEEEccCCcCCCCc--cccccCCCCCcEEECCCCcccCCCcccccCCCCCc
Q 044158          476 LTKLKRLNLDGNHFIGGIPE-SLSNCSSLQGLYISDNDISGSI--PTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE  552 (892)
Q Consensus       476 l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  552 (892)
                      +++|++|++++|.+.+.+|. .+..+++|++|++++|++++..  +..+..+++|++|++++|.+.+..|..+..+++|+
T Consensus       324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  403 (606)
T 3t6q_A          324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE  403 (606)
T ss_dssp             CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS
T ss_pred             cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCC
Confidence            78888888888877765554 4778888888888888887665  66788888888888888888888888888899999


Q ss_pred             EEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccccccccc---CCccccCCCCCCEEEc
Q 044158          553 ILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGE---VPLRLCQLQKLRLLDL  629 (892)
Q Consensus       553 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L  629 (892)
                      +|++++|++++...+..+..+++|++|++++|.+++..|..++.+++|++|++++|++++.   .+..+..+++|++|++
T Consensus       404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L  483 (606)
T 3t6q_A          404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL  483 (606)
T ss_dssp             EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred             eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence            9999999988754455688899999999999999988888899999999999999999863   3356888999999999


Q ss_pred             CCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCcc
Q 044158          630 SHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNK  709 (892)
Q Consensus       630 s~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~  709 (892)
                      ++|++++..|..+..+                                                    ++|+.||+++|+
T Consensus       484 s~n~l~~~~~~~~~~l----------------------------------------------------~~L~~L~Ls~N~  511 (606)
T 3t6q_A          484 SFCDLSSIDQHAFTSL----------------------------------------------------KMMNHVDLSHNR  511 (606)
T ss_dssp             TTSCCCEECTTTTTTC----------------------------------------------------TTCCEEECCSSC
T ss_pred             CCCccCccChhhhccc----------------------------------------------------cCCCEEECCCCc
Confidence            9999987777665433                                                    368999999999


Q ss_pred             ccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCC
Q 044158          710 LIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIP  763 (892)
Q Consensus       710 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip  763 (892)
                      +++..|..+..++.| .|+|++|++++.+|..++.+++|+.|++++|.+++..+
T Consensus       512 l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          512 LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            999999999999999 99999999999999999999999999999999997655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.2e-53  Score=513.58  Aligned_cols=560  Identities=21%  Similarity=0.169  Sum_probs=336.4

Q ss_pred             EEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEEC
Q 044158          105 NLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYL  184 (892)
Q Consensus       105 ~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L  184 (892)
                      ..+.+++.++ .+|.    ..++|++|+|++|.+++..+ ..|.++++|++|++++|..... ..+..+.++++|++|+|
T Consensus         8 ~~dcs~~~L~-~vP~----lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~L   80 (844)
T 3j0a_A            8 IAFYRFCNLT-QVPQ----VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDL   80 (844)
T ss_dssp             EEEESCCCSS-CCCS----SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEEC
T ss_pred             EEEccCCCCC-CCCC----CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEEC
Confidence            5666777776 5663    34678888888888776543 3477777777777777744322 01445666666666666


Q ss_pred             CCCCCCCccCCcccccCCCCCcEEEccCCcCccCcccc--ccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCc
Q 044158          185 KSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWC--LANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNN  262 (892)
Q Consensus       185 ~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n  262 (892)
                      ++|.+.+..+.  .++++++|++|++++|.+.+..|..  ++++++|++|++++|.+++...+..++++++|++|++++|
T Consensus        81 s~N~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A           81 GSSKIYFLHPD--AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             TTCCCCEECTT--SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             CCCcCcccCHh--HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            66666555444  4556666666666666655544332  5555555555555555544322234445555555555554


Q ss_pred             cccCCCCchhhcCCCCccEEEccCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcC
Q 044158          263 HFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNM  342 (892)
Q Consensus       263 ~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  342 (892)
                      .+++                                                                            
T Consensus       159 ~i~~----------------------------------------------------------------------------  162 (844)
T 3j0a_A          159 QIFL----------------------------------------------------------------------------  162 (844)
T ss_dssp             CCCC----------------------------------------------------------------------------
T ss_pred             cCCe----------------------------------------------------------------------------
Confidence            4332                                                                            


Q ss_pred             ccccchhhhhcC--CCCCEEEccCCcCcCCCCCCCCCCCC------ccEEEccCCcCCCCCchhhhhcC--CCCcEEECc
Q 044158          343 RGEFPSWLLENN--TNLRSIILANNSLSGPFRLPTRSRKN------IIALDISYNKLQGHIPVEIGKVL--PNLGFLTIS  412 (892)
Q Consensus       343 ~~~~p~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~------L~~L~l~~n~l~~~i~~~~~~~l--~~L~~L~L~  412 (892)
                        ..|.. +..+  ++|+.|++++|.+.+..+..+..+++      |+.|++++|.+++.++..+...+  +.++.+.++
T Consensus       163 --~~~~~-l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~  239 (844)
T 3j0a_A          163 --VCEHE-LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA  239 (844)
T ss_dssp             --CCSGG-GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred             --eCHHH-cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence              22221 2222  55666666666665554444444333      77788887777766666554422  456677766


Q ss_pred             CC---------cCCccCchhccCC--CCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcE
Q 044158          413 FN---------AFNGSIPSSFGDM--NSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKR  481 (892)
Q Consensus       413 ~n---------~~~~~~p~~~~~l--~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  481 (892)
                      .+         .+.+..+..|..+  ++|+.|++++|.+. .++...+..+++|+.|++++|++++..+..|..+++|++
T Consensus       240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  318 (844)
T 3j0a_A          240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV  318 (844)
T ss_dssp             SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred             cccccccccccccCCCChhhhhccccCCccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence            33         2322333344443  56777777777776 333344456677777777777777766667777777777


Q ss_pred             EeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCcc
Q 044158          482 LNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI  561 (892)
Q Consensus       482 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  561 (892)
                      |++++|++.+..|..|..+++|++|++++|++.+..+..+..+++|+.|++++|.+++.     ..+++|+.|++++|++
T Consensus       319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l  393 (844)
T 3j0a_A          319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKL  393 (844)
T ss_dssp             EEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCC
T ss_pred             EECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCc
Confidence            77777777766666777777777777777777766666677777777777777776632     2266677777777777


Q ss_pred             CCCcccccccCCCCccEEEccCCccCccCC-hhhhcCCCCCEEecccccccccCCc-cccCCCCCCEEEcCCCcCCCCCC
Q 044158          562 AGRPLNGAFSKCSYLLTLDLCNNRLNGNIP-NWMGRLSQLRYLILANNNFEGEVPL-RLCQLQKLRLLDLSHNNFSGQIP  639 (892)
Q Consensus       562 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p  639 (892)
                      +.+  |..   ..+++.|++++|++++... ..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+++..+
T Consensus       394 ~~l--~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~  468 (844)
T 3j0a_A          394 VTL--PKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE  468 (844)
T ss_dssp             CCC--CCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred             ccc--ccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc
Confidence            643  222   3567777777777765422 2345677777777777777654332 34456777777777777763322


Q ss_pred             ccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCcccc
Q 044158          640 PCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIG  719 (892)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  719 (892)
                      .......                                               ...+++|+.|+|++|++++..|..|.
T Consensus       469 ~~~~~~~-----------------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~  501 (844)
T 3j0a_A          469 TELCWDV-----------------------------------------------FEGLSHLQVLYLNHNYLNSLPPGVFS  501 (844)
T ss_dssp             SCCCSSC-----------------------------------------------SSCBCCEECCCCCHHHHTTCCTTSSS
T ss_pred             cccchhh-----------------------------------------------hcCcccccEEECCCCcccccChhHcc
Confidence            1110000                                               01234577777777777777777777


Q ss_pred             ccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCccccccCCCCcc
Q 044158          720 ELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDED  799 (892)
Q Consensus       720 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~  799 (892)
                      .+++|+.|+|++|++++.+|..+.  ++|+.|||++|+|++.+|..+.   .|+.+++++|++.+.++.  ..   |...
T Consensus       502 ~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~--~~---f~~~  571 (844)
T 3j0a_A          502 HLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL--ST---FINW  571 (844)
T ss_dssp             SCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC--CS---HHHH
T ss_pred             chhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc--HH---HHHH
Confidence            777777777777777766666555  6777777777777777776543   567777777777766552  11   1111


Q ss_pred             cccCCCCCCCCCCCCCCCCCC
Q 044158          800 SYEGNPFLCGPPLPKICNENR  820 (892)
Q Consensus       800 ~~~gN~~lc~~~l~~~c~~~~  820 (892)
                      ...+|..+||.+....|..+.
T Consensus       572 ~~~~~~~~~~~~~~~~C~~p~  592 (844)
T 3j0a_A          572 LNHTNVTIAGPPADIYCVYPD  592 (844)
T ss_dssp             HHHTTTTTCCCGGGCCCSSCS
T ss_pred             HHhcCcccccccccCccCCch
Confidence            223444555555555676543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.5e-52  Score=489.58  Aligned_cols=536  Identities=21%  Similarity=0.200  Sum_probs=347.9

Q ss_pred             CCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEeC
Q 044158           79 LKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDL  158 (892)
Q Consensus        79 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L  158 (892)
                      -++++.++++++. +|..+.  ++|++|++++|.++ .++...|.++++|++|++++|.++++. +..|.++++|++|++
T Consensus        13 ~~~~~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~~~~l~~L~~L~L   87 (606)
T 3vq2_A           13 NITYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIE-DKAWHGLHHLSNLIL   87 (606)
T ss_dssp             TTEEECTTSCCSS-CCTTSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEEC
T ss_pred             CCceEccCCCccc-CCCCCC--CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccC-HHHhhchhhcCEeEC
Confidence            4678888888874 455444  78888888888887 455557888888888888888888764 334788888888888


Q ss_pred             CCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCcc-CccccccCCCCCcEEeCCCC
Q 044158          159 SGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIG-SLPWCLANLTSLRVLHVPDN  237 (892)
Q Consensus       159 ~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n  237 (892)
                      ++|.++..  .+..++++++|++|++++|.+.+..+.  .++++++|++|++++|.+.+ .+|..++++++|++|++++|
T Consensus        88 s~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A           88 TGNPIQSF--SPGSFSGLTSLENLVAVETKLASLESF--PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             TTCCCCCC--CTTSSTTCTTCCEEECTTSCCCCSSSS--CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred             CCCccccc--ChhhcCCcccCCEEEccCCcccccccc--ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence            88887765  566777777777777777777665544  46777777777777777765 45666777777777777777


Q ss_pred             CcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCccccccccccccCCCCCcceeEEEcCCCCCC
Q 044158          238 QLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDS  317 (892)
Q Consensus       238 ~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  317 (892)
                      ++++.. +..++.+++|+.                                                             
T Consensus       164 ~l~~~~-~~~~~~l~~L~~-------------------------------------------------------------  181 (606)
T 3vq2_A          164 YIQTIT-VNDLQFLRENPQ-------------------------------------------------------------  181 (606)
T ss_dssp             CCCEEC-TTTTHHHHHCTT-------------------------------------------------------------
T ss_pred             cceecC-hhhhhhhhcccc-------------------------------------------------------------
Confidence            665422 333333332220                                                             


Q ss_pred             CCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCch
Q 044158          318 DGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPV  397 (892)
Q Consensus       318 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~  397 (892)
                                                            .+++|++++|.+++..+..+... +|+.|++++|.+.+....
T Consensus       182 --------------------------------------~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~  222 (606)
T 3vq2_A          182 --------------------------------------VNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMK  222 (606)
T ss_dssp             --------------------------------------CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHH
T ss_pred             --------------------------------------ccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHH
Confidence                                                  02233333333333322233222 566677777666543333


Q ss_pred             hhhhcCCCCcEEECcCCcCCc------cCchhccCCC--CCcEEEC-cCCcCccccchhHhhcCccCcEEEccCCccccc
Q 044158          398 EIGKVLPNLGFLTISFNAFNG------SIPSSFGDMN--SLIYLDL-SNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQ  468 (892)
Q Consensus       398 ~~~~~l~~L~~L~L~~n~~~~------~~p~~~~~l~--~L~~L~L-~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~  468 (892)
                      .....++.|+.+++..+.+.+      ..+..+..+.  .++.+++ ..+.+.+.+|.  +..+++|+.|++++|.+...
T Consensus       223 ~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l  300 (606)
T 3vq2_A          223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYL  300 (606)
T ss_dssp             HHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCC
T ss_pred             HHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchhh
Confidence            333447777777665443321      1111122211  3455555 55566655555  45667777777777776543


Q ss_pred             ccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCC--Cccccc
Q 044158          469 LFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGP--IPSEFC  546 (892)
Q Consensus       469 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~  546 (892)
                       + .+..+++|+.|++++|.+ +.+| .+ .+++|++|++++|+..+..  .+..+++|+.|++++|.+++.  .|..+.
T Consensus       301 -~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~  373 (606)
T 3vq2_A          301 -E-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDL  373 (606)
T ss_dssp             -C-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHH
T ss_pred             -h-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhc
Confidence             3 566677777777777777 4566 34 6777777777777544322  455677777777777777654  356677


Q ss_pred             CCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCC-hhhhcCCCCCEEecccccccccCCccccCCCCCC
Q 044158          547 QLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP-NWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLR  625 (892)
Q Consensus       547 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  625 (892)
                      .+++|++|++++|.+++  +|..+..+++|++|++++|++.+..| ..+..+++|++|++++|++.+..|..+..+++|+
T Consensus       374 ~~~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  451 (606)
T 3vq2_A          374 GTNSLRHLDLSFNGAII--MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN  451 (606)
T ss_dssp             CCSCCCEEECCSCSEEE--ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred             cCCcccEeECCCCcccc--chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC
Confidence            77777777777777764  34566777777777777777776666 5667777777777777777776777777777777


Q ss_pred             EEEcCCCcCCCC-CCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceee
Q 044158          626 LLDLSHNNFSGQ-IPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLD  704 (892)
Q Consensus       626 ~L~Ls~N~l~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  704 (892)
                      +|++++|++++. +|..+..                                                    +++|+.|+
T Consensus       452 ~L~l~~n~l~~~~~~~~~~~----------------------------------------------------l~~L~~L~  479 (606)
T 3vq2_A          452 TLKMAGNSFKDNTLSNVFAN----------------------------------------------------TTNLTFLD  479 (606)
T ss_dssp             EEECTTCEEGGGEECSCCTT----------------------------------------------------CTTCCEEE
T ss_pred             EEECCCCcCCCcchHHhhcc----------------------------------------------------CCCCCEEE
Confidence            777777777653 4443332                                                    23577777


Q ss_pred             ccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCC-CCCEEEccCCccc
Q 044158          705 LSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELN-ALAVFTVAHNNLS  783 (892)
Q Consensus       705 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~l~ls~N~l~  783 (892)
                      +++|++++..|..++.+++|++|+|++|++++.+|..|+++++|+.||+++|+++ .+|..+..++ +|+++++++|++.
T Consensus       480 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCC
T ss_pred             CCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcc
Confidence            7777777777777777777777777777777777777777777777777777777 5666666665 4777777777777


Q ss_pred             ccCCc
Q 044158          784 GKIPE  788 (892)
Q Consensus       784 g~ip~  788 (892)
                      +..+.
T Consensus       559 c~c~~  563 (606)
T 3vq2_A          559 CICEH  563 (606)
T ss_dssp             CSSTT
T ss_pred             cCCcc
Confidence            66553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=9.7e-52  Score=502.38  Aligned_cols=544  Identities=21%  Similarity=0.214  Sum_probs=392.5

Q ss_pred             cEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEE
Q 044158           52 ESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGL  131 (892)
Q Consensus        52 ~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L  131 (892)
                      +..|.++++++.++.        -.++|++|||++|.+++..+..|.++++|++|+|++|...+.+++..|.++++|++|
T Consensus         7 ~~~dcs~~~L~~vP~--------lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L   78 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL   78 (844)
T ss_dssp             EEEEESCCCSSCCCS--------SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEE
T ss_pred             eEEEccCCCCCCCCC--------CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEE
Confidence            456777777765542        346888888888888887788888888888888888866666766678888888888


Q ss_pred             eCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccc--cccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEE
Q 044158          132 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLH--SIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELY  209 (892)
Q Consensus       132 ~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~  209 (892)
                      +|++|.+.+..+ ..|.++++|++|+|++|.+++.  .+.  .++++++|++|++++|.+.+..+. ..++++++|++|+
T Consensus        79 ~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~-~~~~~L~~L~~L~  154 (844)
T 3j0a_A           79 DLGSSKIYFLHP-DAFQGLFHLFELRLYFCGLSDA--VLKDGYFRNLKALTRLDLSKNQIRSLYLH-PSFGKLNSLKSID  154 (844)
T ss_dssp             ECTTCCCCEECT-TSSCSCSSCCCEECTTCCCSSC--CSTTCCCSSCSSCCEEEEESCCCCCCCCC-GGGGTCSSCCEEE
T ss_pred             ECCCCcCcccCH-hHccCCcccCEeeCcCCCCCcc--cccCccccccCCCCEEECCCCcccccccc-hhHhhCCCCCEEE
Confidence            888888877643 3477777777777777777653  222  256666666666666665544321 1355566666666


Q ss_pred             ccCCcCccCccccccCC--CCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCc
Q 044158          210 IDHNDFIGSLPWCLANL--TSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGREN  287 (892)
Q Consensus       210 L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~  287 (892)
                      +++|.+.+..+..+..+  ++|+.|++++|.+.+.. +..+..+++                                  
T Consensus       155 Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~-~~~~~~~~~----------------------------------  199 (844)
T 3j0a_A          155 FSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV-SVDWGKCMN----------------------------------  199 (844)
T ss_dssp             EESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC-CCCCCSSSC----------------------------------
T ss_pred             CCCCcCCeeCHHHcccccCCccceEECCCCcccccc-ccchhhcCC----------------------------------
Confidence            66665555555555444  45555555555554422 222222211                                  


Q ss_pred             cccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhh--cCCCCCEEEccCC
Q 044158          288 QIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLE--NNTNLRSIILANN  365 (892)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~--~~~~L~~L~L~~n  365 (892)
                                                           .+ ....|++|++++|.+.+.+|..+..  ..+.++.+.+..+
T Consensus       200 -------------------------------------~~-~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~  241 (844)
T 3j0a_A          200 -------------------------------------PF-RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH  241 (844)
T ss_dssp             -------------------------------------TT-TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred             -------------------------------------cc-ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence                                                 00 0112444444444444444443222  1245677777644


Q ss_pred             cCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhc--CCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccc
Q 044158          366 SLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKV--LPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE  443 (892)
Q Consensus       366 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~--l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~  443 (892)
                      .....               ...+.+.+. ....+..  .++|+.|++++|.+.+..|..|..+++|+.|++++|+++ .
T Consensus       242 ~~~~~---------------~~~~~l~~~-~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~  304 (844)
T 3j0a_A          242 IMGAG---------------FGFHNIKDP-DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-K  304 (844)
T ss_dssp             CCBCS---------------SSCSSSTTG-GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-E
T ss_pred             ccccc---------------ccccccCCC-ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC-C
Confidence            33211               112223211 1111111  368999999999999888888999999999999999998 4


Q ss_pred             cchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccC
Q 044158          444 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGN  523 (892)
Q Consensus       444 i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  523 (892)
                      ++...+.++++|++|++++|.+++..+..|..+++|+.|++++|++.+..+..|..+++|++|++++|.+++.     ..
T Consensus       305 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~  379 (844)
T 3j0a_A          305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HF  379 (844)
T ss_dssp             ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SS
T ss_pred             CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cC
Confidence            4444557899999999999999988889999999999999999999887788899999999999999998843     23


Q ss_pred             CCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCCh-hhhcCCCCCE
Q 044158          524 ISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPN-WMGRLSQLRY  602 (892)
Q Consensus       524 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~  602 (892)
                      +++|+.|++++|+++ .+|..   ..+++.|++++|++++++.+..+..+++|++|++++|++++..+. .+..+++|+.
T Consensus       380 ~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~  455 (844)
T 3j0a_A          380 IPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ  455 (844)
T ss_dssp             CCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCB
T ss_pred             CCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcccc
Confidence            788999999999998 44543   457999999999999876666677899999999999999866543 4566899999


Q ss_pred             Eeccccccc-----ccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCC
Q 044158          603 LILANNNFE-----GEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGE  677 (892)
Q Consensus       603 L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (892)
                      |++++|.++     +..+..+..+++|+.|+|++|++++..|..+..+                                
T Consensus       456 L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--------------------------------  503 (844)
T 3j0a_A          456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL--------------------------------  503 (844)
T ss_dssp             CEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSC--------------------------------
T ss_pred             ccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccch--------------------------------
Confidence            999999997     4445678889999999999999997777655433                                


Q ss_pred             cceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCc
Q 044158          678 KETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNN  757 (892)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~  757 (892)
                                          ++|+.|+|++|++++..|..+.  ++|+.|+|++|++++.+|..|.   +|+.|++++|.
T Consensus       504 --------------------~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np  558 (844)
T 3j0a_A          504 --------------------TALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNK  558 (844)
T ss_dssp             --------------------CSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEEC
T ss_pred             --------------------hhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCC
Confidence                                3699999999999987777666  8999999999999999998764   78999999999


Q ss_pred             CcccCC
Q 044158          758 LTGKIP  763 (892)
Q Consensus       758 l~g~ip  763 (892)
                      +.+..+
T Consensus       559 ~~C~c~  564 (844)
T 3j0a_A          559 FICECE  564 (844)
T ss_dssp             CCCSSS
T ss_pred             cccccc
Confidence            987654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.5e-51  Score=483.31  Aligned_cols=521  Identities=21%  Similarity=0.190  Sum_probs=396.3

Q ss_pred             CCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCC
Q 044158           49 QQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNL  128 (892)
Q Consensus        49 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L  128 (892)
                      ++|++|+|++|.+++...    ..|.++++|++|+|++|.+++..|.+|.++++|++|++++|.+++ +++..|+++++|
T Consensus        32 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L  106 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKS----YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSL  106 (606)
T ss_dssp             TTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC-CCTTSSTTCTTC
T ss_pred             CCcCEEECCCCCcCEeCh----hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc-cChhhcCCcccC
Confidence            677888888888776554    247778888888888888877777778888888888888887774 433477788888


Q ss_pred             CEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCC---
Q 044158          129 EGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHL---  205 (892)
Q Consensus       129 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L---  205 (892)
                      ++|++++|.+++..+. .++++++|++|++++|.+.+. .++..++++++|++|++++|.+.+..+.  .++.+++|   
T Consensus       107 ~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~~  182 (606)
T 3vq2_A          107 ENLVAVETKLASLESF-PIGQLITLKKLNVAHNFIHSC-KLPAYFSNLTNLVHVDLSYNYIQTITVN--DLQFLRENPQV  182 (606)
T ss_dssp             CEEECTTSCCCCSSSS-CCTTCTTCCEEECCSSCCCCC-CCCGGGGTCTTCCEEECCSSCCCEECTT--TTHHHHHCTTC
T ss_pred             CEEEccCCcccccccc-ccCCCCCCCEEeCCCCcccce-echHhHhhcCCCCEEEccCCcceecChh--hhhhhhccccc
Confidence            8888888877765433 377777777777777777652 1456677777777777777776655443  34444433   


Q ss_pred             -cEEEccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEc
Q 044158          206 -QELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHG  284 (892)
Q Consensus       206 -~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l  284 (892)
                       ++|++++|.+.+..+..+... +|+.|++++|.+.+...+..+..++.++.+++..+.+......         ..+  
T Consensus       183 l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l---------~~~--  250 (606)
T 3vq2_A          183 NLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL---------EIF--  250 (606)
T ss_dssp             CCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC---------SCC--
T ss_pred             cceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc---------ccc--
Confidence             366666666665444444333 6666666666655433344555555555555544333211000         000  


Q ss_pred             cCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEc-cCCcCccccchhhhhcCCCCCEEEcc
Q 044158          285 RENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVII-SDVNMRGEFPSWLLENNTNLRSIILA  363 (892)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l-~~~~~~~~~p~~~~~~~~~L~~L~L~  363 (892)
                                                        ....+..+... .++.+++ ..+.+.+.+|.  +..+++|+.|+++
T Consensus       251 ----------------------------------~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~  293 (606)
T 3vq2_A          251 ----------------------------------EPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLA  293 (606)
T ss_dssp             ----------------------------------CGGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEE
T ss_pred             ----------------------------------ChHHhhhhhhc-cHhheeccccccccccccc--cccCCCCCEEEec
Confidence                                              00111111222 4556666 55666777776  6789999999999


Q ss_pred             CCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccc
Q 044158          364 NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE  443 (892)
Q Consensus       364 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~  443 (892)
                      +|.+....  .+..+++|++|++++|.+ +.+|. +  .+++|++|++++|...+..  .+..+++|++|++++|.+++.
T Consensus       294 ~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~  365 (606)
T 3vq2_A          294 GVSIKYLE--DVPKHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFS  365 (606)
T ss_dssp             SCCCCCCC--CCCTTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEE
T ss_pred             Cccchhhh--hccccccCCEEEcccccC-ccccc-C--CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCC
Confidence            99997643  778889999999999999 58884 3  4899999999999665444  677999999999999999844


Q ss_pred             --cchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCC-cccccCCCCcEEEccCCcCCCCcccc
Q 044158          444 --IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIP-ESLSNCSSLQGLYISDNDISGSIPTW  520 (892)
Q Consensus       444 --i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~  520 (892)
                        +|..+ ..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..| ..+..+++|++|++++|++++..|..
T Consensus       366 ~~~~~~~-~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  443 (606)
T 3vq2_A          366 GCCSYSD-LGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI  443 (606)
T ss_dssp             EECCHHH-HCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred             cchhhhh-ccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh
Confidence              25544 689999999999999986 45888999999999999999998877 68999999999999999999999999


Q ss_pred             ccCCCCCcEEECCCCcccC-CCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCC
Q 044158          521 MGNISFLDAIIMPDNHLEG-PIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQ  599 (892)
Q Consensus       521 ~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~  599 (892)
                      +..+++|++|++++|.+++ .+|..+..+++|++|++++|++++ ..|..+..+++|++|++++|++++..|..++.+++
T Consensus       444 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  522 (606)
T 3vq2_A          444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS  522 (606)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred             hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc-cChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence            9999999999999999998 478889999999999999999998 55778999999999999999999999999999999


Q ss_pred             CCEEecccccccccCCccccCCC-CCCEEEcCCCcCCCCCC
Q 044158          600 LRYLILANNNFEGEVPLRLCQLQ-KLRLLDLSHNNFSGQIP  639 (892)
Q Consensus       600 L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~g~~p  639 (892)
                      |++|++++|+++ .+|..+..++ +|++|++++|++.+..+
T Consensus       523 L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          523 LSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            999999999999 6777788887 59999999999987655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2e-49  Score=465.76  Aligned_cols=332  Identities=20%  Similarity=0.264  Sum_probs=192.7

Q ss_pred             cCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCc-CCC-CCchhhhhc-----CCCCcEEECcCCcCCccCch--h
Q 044158          353 NNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNK-LQG-HIPVEIGKV-----LPNLGFLTISFNAFNGSIPS--S  423 (892)
Q Consensus       353 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~-~i~~~~~~~-----l~~L~~L~L~~n~~~~~~p~--~  423 (892)
                      ++++|++|++++|.+.+..|..+..+++|++|++++|+ ++| .+|..++..     +++|++|++++|+++ .+|.  .
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~  325 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS  325 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence            56666666666666666666666677777777777776 776 677766541     267777777777777 5666  6


Q ss_pred             ccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCC-CcEEeecCccCcCCCCcccccCC-
Q 044158          424 FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTK-LKRLNLDGNHFIGGIPESLSNCS-  501 (892)
Q Consensus       424 ~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~~~~~~l~-  501 (892)
                      ++++++|++|++++|+++|.+|  .+..+++|++|++++|+++ .+|..+..+++ |++|++++|+++ .+|..+..++ 
T Consensus       326 l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l  401 (636)
T 4eco_A          326 LQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV  401 (636)
T ss_dssp             HTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCS
T ss_pred             hccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhccc
Confidence            7777777777777777776666  3345666666666666666 45555666666 666666666665 4555554433 


Q ss_pred             -CCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEE
Q 044158          502 -SLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLD  580 (892)
Q Consensus       502 -~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~  580 (892)
                       +|++|++++|++++.+|..+..+.                 .....+++|++|++++|+++.++ +..+..+++|++|+
T Consensus       402 ~~L~~L~Ls~N~l~~~~p~~l~~~~-----------------~~~~~~~~L~~L~Ls~N~l~~lp-~~~~~~l~~L~~L~  463 (636)
T 4eco_A          402 SVMSAIDFSYNEIGSVDGKNFDPLD-----------------PTPFKGINVSSINLSNNQISKFP-KELFSTGSPLSSIN  463 (636)
T ss_dssp             SCEEEEECCSSCTTTTTTCSSCTTC-----------------SSCCCCCCEEEEECCSSCCCSCC-THHHHTTCCCSEEE
T ss_pred             CccCEEECcCCcCCCcchhhhcccc-----------------cccccCCCCCEEECcCCccCcCC-HHHHccCCCCCEEE
Confidence             566666666666555555544000                 00003445555555555555321 22334455555555


Q ss_pred             ccCCccCccCCh-hhhc-------CCCCCEEecccccccccCCcccc--CCCCCCEEEcCCCcCCCCCCccccCCccccc
Q 044158          581 LCNNRLNGNIPN-WMGR-------LSQLRYLILANNNFEGEVPLRLC--QLQKLRLLDLSHNNFSGQIPPCLDNTSLHRE  650 (892)
Q Consensus       581 L~~n~l~~~~p~-~~~~-------l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~  650 (892)
                      +++|+++ .+|. .+..       +++|++|++++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+.++     
T Consensus       464 Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l-----  535 (636)
T 4eco_A          464 LMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNS-----  535 (636)
T ss_dssp             CCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC-----
T ss_pred             CCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcC-----
Confidence            5555555 3332 2222       226677777777766 5666655  66666666666666664 55444322     


Q ss_pred             ccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEcc
Q 044158          651 EGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLS  730 (892)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  730 (892)
                                                                     ++|+.|++++|+                  +++
T Consensus       536 -----------------------------------------------~~L~~L~Ls~N~------------------~ls  550 (636)
T 4eco_A          536 -----------------------------------------------STLKGFGIRNQR------------------DAQ  550 (636)
T ss_dssp             -----------------------------------------------SSCCEEECCSCB------------------CTT
T ss_pred             -----------------------------------------------CCCCEEECCCCc------------------ccc
Confidence                                                           245555555443                  334


Q ss_pred             CccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCccc
Q 044158          731 RNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS  783 (892)
Q Consensus       731 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~  783 (892)
                      +|++.+.+|..++++++|+.|||++|++ +.+|..+.  ++|+.||+++|++.
T Consensus       551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             cCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence            5555555555555566666666666666 45555543  45666666666544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.5e-47  Score=443.96  Aligned_cols=501  Identities=20%  Similarity=0.189  Sum_probs=281.4

Q ss_pred             CCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCC
Q 044158           49 QQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNL  128 (892)
Q Consensus        49 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L  128 (892)
                      +++++|||++|.+++...    ..|.++++|++|+|++|++++..+.+|+++++|++|++++|.++ .++...|..+++|
T Consensus        28 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L  102 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSL  102 (570)
T ss_dssp             SSCCEEECCSCCCCEECT----TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTC
T ss_pred             ccccEEEccCCccCccCh----hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcccc
Confidence            456666776666655433    23566666666666666666655666666666666666666665 3444456666666


Q ss_pred             CEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCC---
Q 044158          129 EGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHL---  205 (892)
Q Consensus       129 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L---  205 (892)
                      ++|++++|.+++.... .++++++|++|++++|.++.. .++..++++++|++|++++|.+.+..+.  .++.+++|   
T Consensus       103 ~~L~L~~n~l~~l~~~-~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~~  178 (570)
T 2z63_A          103 QKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPLL  178 (570)
T ss_dssp             CEEECTTSCCCCSTTC-SCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECTTSCCCEECGG--GGHHHHTCTTC
T ss_pred             ccccccccccccCCCc-cccccccccEEecCCCcccee-cChhhhcccCCCCEEeCcCCccceecHH--Hccchhccchh
Confidence            6666666666654322 255666666666666655542 0344455555555555555554433222  33333344   


Q ss_pred             -cEEEccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEc
Q 044158          206 -QELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHG  284 (892)
Q Consensus       206 -~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l  284 (892)
                       ++|++++|.+.+..+..+..                         . +|++|++++|..........+..++.++...+
T Consensus       179 ~~~L~l~~n~l~~~~~~~~~~-------------------------~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l  232 (570)
T 2z63_A          179 NLSLDLSLNPMNFIQPGAFKE-------------------------I-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL  232 (570)
T ss_dssp             CCEEECTTCCCCEECTTTTTT-------------------------C-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEE
T ss_pred             hhhcccCCCCceecCHHHhcc-------------------------C-cceeEecccccccccchhhhhcCccccceeee
Confidence             44444444444444333333                         2 45555555443222111223334444444333


Q ss_pred             cCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCC-cCccccchhhhhcCCCCCEEEcc
Q 044158          285 RENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDV-NMRGEFPSWLLENNTNLRSIILA  363 (892)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~p~~~~~~~~~L~~L~L~  363 (892)
                      ....+...           ..++.+         .......+..+ .++.++++.+ .+.+..|.. +..+++|++|+++
T Consensus       233 ~~~~~~~~-----------~~l~~~---------~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~  290 (570)
T 2z63_A          233 VLGEFRNE-----------GNLEKF---------DKSALEGLCNL-TIEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLV  290 (570)
T ss_dssp             EEEECCCC-----------SSCEEC---------CTTTTGGGGGS-EEEEEEEEETTEEESCSTTT-TGGGTTCSEEEEE
T ss_pred             ccccccCc-----------hhhhhc---------chhhhcccccc-chhhhhhhcchhhhhhchhh-hcCcCcccEEEec
Confidence            22111000           000000         00000011111 2344444444 333333333 4455555555555


Q ss_pred             CCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccc
Q 044158          364 NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE  443 (892)
Q Consensus       364 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~  443 (892)
                      +|.+++ .+..+..+ +|++|++++|.+. .+|.                           ..+++|++|++++|.+.+.
T Consensus       291 ~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~---------------------------~~l~~L~~L~l~~n~~~~~  340 (570)
T 2z63_A          291 SVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPT---------------------------LKLKSLKRLTFTSNKGGNA  340 (570)
T ss_dssp             SCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCB---------------------------CBCSSCCEEEEESCBSCCB
T ss_pred             Cccchh-hhhhhccC-CccEEeeccCccc-ccCc---------------------------ccccccCEEeCcCCccccc
Confidence            555543 22233333 4555555555444 3333                           2344455555555544433


Q ss_pred             cchhHhhcCccCcEEEccCCcccccc--cccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCcc-cc
Q 044158          444 IPEHLAMGCFNLEYLLLSNNSLQGQL--FSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIP-TW  520 (892)
Q Consensus       444 i~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~  520 (892)
                      ++.   ..+++|++|++++|.+++..  +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..
T Consensus       341 ~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~  416 (570)
T 2z63_A          341 FSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV  416 (570)
T ss_dssp             CCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCT
T ss_pred             ccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhh
Confidence            332   23455555555555554432  44455566666666666665543333 6666666666666666665544 45


Q ss_pred             ccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCC
Q 044158          521 MGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQL  600 (892)
Q Consensus       521 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L  600 (892)
                      +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+|..+..+++|++|++++|++++..|.++..+++|
T Consensus       417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  496 (570)
T 2z63_A          417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  496 (570)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence            66677777777777777777777777788888888888887632567778888888888888888888778888888899


Q ss_pred             CEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCc
Q 044158          601 RYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPP  640 (892)
Q Consensus       601 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~  640 (892)
                      ++|++++|++++..|..+..+++|+.|++++|++++..|.
T Consensus       497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            9999999998887777788889999999999999887764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-46  Score=436.88  Aligned_cols=519  Identities=22%  Similarity=0.235  Sum_probs=365.0

Q ss_pred             CCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEeC
Q 044158           79 LKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDL  158 (892)
Q Consensus        79 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L  158 (892)
                      .+.++.++.+++. +|..+.  +++++|++++|.++ .++...|.++++|++|++++|.++++. +..|.++++|++|++
T Consensus         9 ~~~~~c~~~~l~~-ip~~l~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L   83 (570)
T 2z63_A            9 NITYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLIL   83 (570)
T ss_dssp             TTEEECCSSCCSS-CCSSSC--SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEEC-TTTTTTCTTCCEEEC
T ss_pred             CcEEEeCCCCccc-cCCCcc--ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccC-cccccCchhCCEEeC
Confidence            4566777766663 454443  57888888888887 455557888888888888888887654 345778888888888


Q ss_pred             CCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCcc-CccccccCCCCCcEEeCCCC
Q 044158          159 SGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIG-SLPWCLANLTSLRVLHVPDN  237 (892)
Q Consensus       159 ~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n  237 (892)
                      ++|.++..  .+..++.+++|++|++++|.+.+..+.  .++.+++|++|++++|.+.+ .+|..++++++|++|++++|
T Consensus        84 ~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n  159 (570)
T 2z63_A           84 TGNPIQSL--ALGAFSGLSSLQKLVAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  159 (570)
T ss_dssp             TTCCCCEE--CTTTTTTCTTCCEEECTTSCCCCSTTC--SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred             cCCcCCcc--CHhhhcCccccccccccccccccCCCc--cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence            88877654  445677777777777777776655443  36667777777777776665 34666666666666666666


Q ss_pred             CcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCccccccccccccCCCCCcceeEEEcCCCCCC
Q 044158          238 QLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDS  317 (892)
Q Consensus       238 ~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  317 (892)
                      ++++.. +..++.+++|                                                               
T Consensus       160 ~l~~~~-~~~~~~l~~L---------------------------------------------------------------  175 (570)
T 2z63_A          160 KIQSIY-CTDLRVLHQM---------------------------------------------------------------  175 (570)
T ss_dssp             CCCEEC-GGGGHHHHTC---------------------------------------------------------------
T ss_pred             ccceec-HHHccchhcc---------------------------------------------------------------
Confidence            654421 3333333333                                                               


Q ss_pred             CCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCC-CEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCC-C
Q 044158          318 DGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNL-RSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGH-I  395 (892)
Q Consensus       318 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L-~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-i  395 (892)
                                                           +.+ +++++++|.+++..+..+... +|+.|++++|..... +
T Consensus       176 -------------------------------------~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~  217 (570)
T 2z63_A          176 -------------------------------------PLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVM  217 (570)
T ss_dssp             -------------------------------------TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHH
T ss_pred             -------------------------------------chhhhhcccCCCCceecCHHHhccC-cceeEecccccccccch
Confidence                                                 000 233333333333333333322 466666666543322 2


Q ss_pred             chhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCc--cCcEEEccCC-ccccccccc
Q 044158          396 PVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF--NLEYLLLSNN-SLQGQLFSK  472 (892)
Q Consensus       396 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~--~L~~L~L~~n-~l~~~~~~~  472 (892)
                      +..+ ..++.++.+.+....+.        ....++           .++...+.++.  .++.++++++ .+.+..+..
T Consensus       218 ~~~~-~~l~~l~~~~l~~~~~~--------~~~~l~-----------~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~  277 (570)
T 2z63_A          218 KTCI-QGLAGLEVHRLVLGEFR--------NEGNLE-----------KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL  277 (570)
T ss_dssp             HHHH-HTTTTCEEEEEEEEECC--------CCSSCE-----------ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT
T ss_pred             hhhh-cCccccceeeecccccc--------Cchhhh-----------hcchhhhccccccchhhhhhhcchhhhhhchhh
Confidence            3223 33666666555433222        111111           11111122222  3567777777 677777788


Q ss_pred             ccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCc
Q 044158          473 KINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE  552 (892)
Q Consensus       473 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  552 (892)
                      +..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+. .+|.  ..+++|+.|++++|.+.+..+.  ..+++|+
T Consensus       278 ~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~  350 (570)
T 2z63_A          278 FNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLE  350 (570)
T ss_dssp             TGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCC
T ss_pred             hcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCC
Confidence            888888888888888887 577777777 8888888888887 4444  4678888888888888766554  6788899


Q ss_pred             EEeCCCCccCCCc-ccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCC-ccccCCCCCCEEEcC
Q 044158          553 ILDLSKNNIAGRP-LNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVP-LRLCQLQKLRLLDLS  630 (892)
Q Consensus       553 ~L~Ls~n~l~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls  630 (892)
                      +|++++|.+++.. .+..+..+++|++|++++|.+.+..+. +..+++|++|++++|++.+..| ..+..+++|++|+++
T Consensus       351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  429 (570)
T 2z63_A          351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS  429 (570)
T ss_dssp             EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred             EEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence            9999999887632 256778889999999999988865544 8888999999999999887665 467888999999999


Q ss_pred             CCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccc
Q 044158          631 HNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKL  710 (892)
Q Consensus       631 ~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  710 (892)
                      +|++++..|..+..                                                    +++|+.|++++|.+
T Consensus       430 ~n~l~~~~~~~~~~----------------------------------------------------l~~L~~L~l~~n~l  457 (570)
T 2z63_A          430 HTHTRVAFNGIFNG----------------------------------------------------LSSLEVLKMAGNSF  457 (570)
T ss_dssp             TSCCEECCTTTTTT----------------------------------------------------CTTCCEEECTTCEE
T ss_pred             CCcccccchhhhhc----------------------------------------------------CCcCcEEECcCCcC
Confidence            99988776665543                                                    33688899999999


Q ss_pred             c-ccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCc
Q 044158          711 I-GEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPE  788 (892)
Q Consensus       711 ~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~  788 (892)
                      + +.+|..+..+++|++|++++|++++.+|..|+.+++|+.|++++|++++.+|..+.++++|+.+++++|+++|.+|.
T Consensus       458 ~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            7 67898999999999999999999998899999999999999999999998888899999999999999999999886

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.8e-46  Score=436.55  Aligned_cols=495  Identities=20%  Similarity=0.214  Sum_probs=316.8

Q ss_pred             CcccceeEecCCCCcEEEEEcCCCccccccccCcccCCCCCCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCC
Q 044158            9 CCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNS   88 (892)
Q Consensus         9 ~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~s~f~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~   88 (892)
                      .|.|.|+ |+....+++             .++...   .++|++|+|++|.+++..+    ..|.++++|++|+|++|+
T Consensus         3 ~C~~~~~-c~~~~~~l~-------------~ip~~~---~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~   61 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFT-------------SIPSGL---TAAMKSLDLSFNKITYIGH----GDLRACANLQVLILKSSR   61 (549)
T ss_dssp             EECTTSE-EECTTSCCS-------------SCCSCC---CTTCCEEECCSSCCCEECS----STTSSCTTCCEEECTTSC
T ss_pred             cCCCCce-EECCCCccc-------------cccccC---CCCccEEECcCCccCccCh----hhhhcCCcccEEECCCCC
Confidence            4999999 975333332             122222   2688888888888876543    347888888888888888


Q ss_pred             CCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCcc
Q 044158           89 FNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSK  168 (892)
Q Consensus        89 i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~  168 (892)
                      +++..+.+|+++++|++|++++|.++ .++...|+++++|++|++++|.+++...+..++++++|++|++++|.+.+.  
T Consensus        62 i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~--  138 (549)
T 2z81_A           62 INTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE--  138 (549)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE--
T ss_pred             cCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccc--
Confidence            88877788888888888888888887 456556888888888888888887654444577777888888877763322  


Q ss_pred             cc-ccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCccCccccccCCCCCcEEeCCCCCccccc--CC
Q 044158          169 VL-HSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENL--SS  245 (892)
Q Consensus       169 ~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~  245 (892)
                      ++ ..+..+++|++|++++|.+.+..+.  .+..+++|++|++++|.+.......+..+++|++|++++|++++..  ..
T Consensus       139 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  216 (549)
T 2z81_A          139 IRRIDFAGLTSLNELEIKALSLRNYQSQ--SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL  216 (549)
T ss_dssp             ECTTTTTTCCEEEEEEEEETTCCEECTT--TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCC
T ss_pred             cCHhhhhcccccCeeeccCCcccccChh--hhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccccccc
Confidence            22 3566666666666666666555444  4556666666666666554322222344556666666665554411  00


Q ss_pred             CcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCcc
Q 044158          246 SPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKF  325 (892)
Q Consensus       246 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  325 (892)
                      .....+++|+.|++++|.+                                                             
T Consensus       217 ~~~~~~~~L~~L~l~~n~l-------------------------------------------------------------  235 (549)
T 2z81_A          217 PVDEVSSPMKKLAFRGSVL-------------------------------------------------------------  235 (549)
T ss_dssp             SSCCCCCCCCEEEEESCEE-------------------------------------------------------------
T ss_pred             chhhhhhcccceecccccc-------------------------------------------------------------
Confidence            1112233344444433332                                                             


Q ss_pred             ccCCCCccEEEccCCcCccccchh---hhhcCCCCCEEEccCCcCcCCCC------CCCCCCCCccEEEccCCcCCCCCc
Q 044158          326 LYHQHHLEFVIISDVNMRGEFPSW---LLENNTNLRSIILANNSLSGPFR------LPTRSRKNIIALDISYNKLQGHIP  396 (892)
Q Consensus       326 l~~~~~L~~L~l~~~~~~~~~p~~---~~~~~~~L~~L~L~~n~l~~~~~------~~~~~~~~L~~L~l~~n~l~~~i~  396 (892)
                                       .+..+..   .+..+++|+.+++++|.+.+...      ..+..+++++.|++.++.+... .
T Consensus       236 -----------------~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-~  297 (549)
T 2z81_A          236 -----------------TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF-Y  297 (549)
T ss_dssp             -----------------EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCG-G
T ss_pred             -----------------chhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchh-h
Confidence                             2222211   12345556666666655544211      1123344555555555443310 0


Q ss_pred             hhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccc---cc
Q 044158          397 VEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFS---KK  473 (892)
Q Consensus       397 ~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~  473 (892)
                      .     .              ...+..+...++|+.|++++|++. .+|..++..+++|++|++++|++++..|.   .+
T Consensus       298 ~-----~--------------~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  357 (549)
T 2z81_A          298 L-----F--------------YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK  357 (549)
T ss_dssp             G-----S--------------CCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCT
T ss_pred             h-----c--------------ccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhh
Confidence            0     0              011122233456666666666665 66666655666777777777776665432   35


Q ss_pred             cccCCCcEEeecCccCcCCCC--cccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCC
Q 044158          474 INLTKLKRLNLDGNHFIGGIP--ESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYL  551 (892)
Q Consensus       474 ~~l~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  551 (892)
                      ..+++|+.|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+  .++|
T Consensus       358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L  433 (549)
T 2z81_A          358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTL  433 (549)
T ss_dssp             TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTC
T ss_pred             hccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCc
Confidence            567777777777777765422  44677777777888777777 466677777778888888887763 33333  2578


Q ss_pred             cEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCC
Q 044158          552 EILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSH  631 (892)
Q Consensus       552 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  631 (892)
                      ++|++++|++++.     ...+++|++|++++|+++ .+|. ...+++|++|++++|++++..|..+..+++|+.|++++
T Consensus       434 ~~L~Ls~N~l~~~-----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~  506 (549)
T 2z81_A          434 EVLDVSNNNLDSF-----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT  506 (549)
T ss_dssp             SEEECCSSCCSCC-----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred             eEEECCCCChhhh-----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecC
Confidence            9999999988873     257789999999999998 5665 46788999999999999988888889999999999999


Q ss_pred             CcCCCCCC
Q 044158          632 NNFSGQIP  639 (892)
Q Consensus       632 N~l~g~~p  639 (892)
                      |++++..|
T Consensus       507 N~~~~~~~  514 (549)
T 2z81_A          507 NPWDCSCP  514 (549)
T ss_dssp             SCBCCCHH
T ss_pred             CCccCCCc
Confidence            99987766

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.8e-46  Score=444.63  Aligned_cols=480  Identities=17%  Similarity=0.219  Sum_probs=237.0

Q ss_pred             ceeEecCCCCcEEEEEcCCCccccccccCcccCCCCCCCcEEeC-CCCccCCccccccccccCCCCC-----CC------
Q 044158           13 QSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDL-SGNNIAGCVENEGLEKLSGLSN-----LK------   80 (892)
Q Consensus        13 ~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~s~f~~~~~L~~L~L-s~n~i~~~~~~~~~~~~~~l~~-----L~------   80 (892)
                      .||+|+. .|||++|+|+++++.|.+   +..|+++++|++||| ++|.+++.........-..+..     ++      
T Consensus       315 ~GV~C~~-~~~V~~L~Ls~~~L~G~i---p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~  390 (876)
T 4ecn_A          315 PGVDLDN-NGRVTGLSLAGFGAKGRV---PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKM  390 (876)
T ss_dssp             TTEEECT-TSCEEEEECTTTCCEEEE---CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHH
T ss_pred             CceEecC-CCCEEEEECccCCCCCcC---chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhh
Confidence            9999986 799999999999888764   367899999999999 8887765422110000000000     00      


Q ss_pred             EEeC-CCCCCCCcc-----------cccccCCCCCCEEecCC--cccccCCChhhhcCCCCCCEEeCCCCCCCC------
Q 044158           81 FLDL-SHNSFNNSV-----------LSSLAGLSSLKNLSLAY--NRLEGSINIEELDSLSNLEGLDMSDNEIDN------  140 (892)
Q Consensus        81 ~L~L-s~n~i~~~~-----------~~~l~~l~~L~~L~Ls~--n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~------  140 (892)
                      .++. ....+.+..           +........++.+.+..  |.+++ ||. .++++++|++|+|++|.+++      
T Consensus       391 ~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~  468 (876)
T 4ecn_A          391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVD  468 (876)
T ss_dssp             HTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSS
T ss_pred             hhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhH-HHhcCCCCCEEECcCCcCCCCccccc
Confidence            0000 000000000           00001111222222222  44443 443 34444444444444444444      


Q ss_pred             -----------cccccccc--CCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCC-CCC-ccCCc-----cccc
Q 044158          141 -----------LVVPKDYR--GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNN-FAK-TVTTT-----QGLC  200 (892)
Q Consensus       141 -----------~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~-----~~l~  200 (892)
                                 .. |..++  ++++|++|+|++|.+.+.  +|..++++++|++|++++|. +++ .+|..     ..+.
T Consensus       469 ~~~~s~n~~~g~i-P~~l~f~~L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~  545 (876)
T 4ecn_A          469 WEDANSDYAKQYE-NEELSWSNLKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED  545 (876)
T ss_dssp             CSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTT
T ss_pred             ccccccccccccC-ChhhhhccCCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhccc
Confidence                       12 22233  555555555555555444  45555555555555555555 444 22220     0122


Q ss_pred             CCCCCcEEEccCCcCccCccc--cccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCC
Q 044158          201 ELAHLQELYIDHNDFIGSLPW--CLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSK  278 (892)
Q Consensus       201 ~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  278 (892)
                      .+++|++|++++|.+. .+|.  .++++++|+.|++++|+++ .+ + .++.+++|+.|++++|.+. .++. .+.++++
T Consensus       546 ~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~l-p-~~~~L~~L~~L~Ls~N~l~-~lp~-~l~~l~~  619 (876)
T 4ecn_A          546 TGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HL-E-AFGTNVKLTDLKLDYNQIE-EIPE-DFCAFTD  619 (876)
T ss_dssp             TTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BC-C-CCCTTSEESEEECCSSCCS-CCCT-TSCEECT
T ss_pred             ccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cc-h-hhcCCCcceEEECcCCccc-cchH-HHhhccc
Confidence            3446666666666666 5555  6666666666666666665 34 3 5666666666666666554 2221 1222222


Q ss_pred             ccEEEccCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcC--CC
Q 044158          279 LKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENN--TN  356 (892)
Q Consensus       279 L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~--~~  356 (892)
                                                                          +|++|++++|.+. .+|.. +...  ++
T Consensus       620 ----------------------------------------------------~L~~L~Ls~N~L~-~lp~~-~~~~~~~~  645 (876)
T 4ecn_A          620 ----------------------------------------------------QVEGLGFSHNKLK-YIPNI-FNAKSVYV  645 (876)
T ss_dssp             ----------------------------------------------------TCCEEECCSSCCC-SCCSC-CCTTCSSC
T ss_pred             ----------------------------------------------------cCCEEECcCCCCC-cCchh-hhccccCC
Confidence                                                                0333333333332 22321 1111  12


Q ss_pred             CCEEEccCCcCcCCCCCC---CC--CCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCc
Q 044158          357 LRSIILANNSLSGPFRLP---TR--SRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLI  431 (892)
Q Consensus       357 L~~L~L~~n~l~~~~~~~---~~--~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~  431 (892)
                      |+.|++++|.+.+..+..   ..  ..++|+.|++++|.++ .+|..++..+++|+.|++++|.+.              
T Consensus       646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~--------------  710 (876)
T 4ecn_A          646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT--------------  710 (876)
T ss_dssp             EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS--------------
T ss_pred             CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC--------------
Confidence            444444444443322110   01  1234555555555554 445444433445555555555444              


Q ss_pred             EEECcCCcCccccchhHhh-------cCccCcEEEccCCccccccccccc--ccCCCcEEeecCccCcCCCCcccccCCC
Q 044158          432 YLDLSNNQLTGEIPEHLAM-------GCFNLEYLLLSNNSLQGQLFSKKI--NLTKLKRLNLDGNHFIGGIPESLSNCSS  502 (892)
Q Consensus       432 ~L~L~~n~l~~~i~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~l~~  502 (892)
                                 .+|...+.       ++++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++.+ +|..+..+++
T Consensus       711 -----------~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~  777 (876)
T 4ecn_A          711 -----------SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQ  777 (876)
T ss_dssp             -----------CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTT
T ss_pred             -----------ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCC
Confidence                       33333221       1224555555555544 3334443  55555555555555554 4555556666


Q ss_pred             CcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEcc
Q 044158          503 LQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLC  582 (892)
Q Consensus       503 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~  582 (892)
                      |+.|+|++|+                  ++++|++.+.+|..+..+++|++|+|++|++.  .+|..+.  ++|+.|+|+
T Consensus       778 L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~--~Ip~~l~--~~L~~LdLs  835 (876)
T 4ecn_A          778 LKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR--KVDEKLT--PQLYILDIA  835 (876)
T ss_dssp             CCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC--BCCSCCC--SSSCEEECC
T ss_pred             CCEEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCCC--ccCHhhc--CCCCEEECC
Confidence            6666665544                  33456666666666666666777777777663  4444433  466777777


Q ss_pred             CCccCccCChhhhcCCCCCEEeccccccc
Q 044158          583 NNRLNGNIPNWMGRLSQLRYLILANNNFE  611 (892)
Q Consensus       583 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  611 (892)
                      +|++....+..+.....+..+.|.+|+..
T Consensus       836 ~N~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          836 DNPNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             SCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             CCCCCccChHHccccccchheeecCCCcc
Confidence            77666555555544444555555555544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.2e-45  Score=429.52  Aligned_cols=491  Identities=20%  Similarity=0.203  Sum_probs=331.9

Q ss_pred             CEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEE
Q 044158          129 EGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQEL  208 (892)
Q Consensus       129 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L  208 (892)
                      ...+.+++.++.+  |..+.  ++|++|++++|.+++.  .+..+..+++|++|++++|.+.+..+.  .++.+++|++|
T Consensus         8 ~~c~~~~~~l~~i--p~~~~--~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L   79 (549)
T 2z81_A            8 GVCDGRSRSFTSI--PSGLT--AAMKSLDLSFNKITYI--GHGDLRACANLQVLILKSSRINTIEGD--AFYSLGSLEHL   79 (549)
T ss_dssp             SEEECTTSCCSSC--CSCCC--TTCCEEECCSSCCCEE--CSSTTSSCTTCCEEECTTSCCCEECTT--TTTTCTTCCEE
T ss_pred             ceEECCCCccccc--cccCC--CCccEEECcCCccCcc--ChhhhhcCCcccEEECCCCCcCccChh--hccccccCCEE
Confidence            3456667777654  22232  6777777777777654  445666777777777777776655544  56667777777


Q ss_pred             EccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCcc
Q 044158          209 YIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQ  288 (892)
Q Consensus       209 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~  288 (892)
                      ++++|.+++..+..++++++|++|++++|.+++.-.+..++.+++|++|++++|.                         
T Consensus        80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-------------------------  134 (549)
T 2z81_A           80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE-------------------------  134 (549)
T ss_dssp             ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-------------------------
T ss_pred             ECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc-------------------------
Confidence            7777777666666666677777777777666542113345555555555555543                         


Q ss_pred             ccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCc
Q 044158          289 IFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLS  368 (892)
Q Consensus       289 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~  368 (892)
                                                                           ..+.+|...++++++|++|++++|.++
T Consensus       135 -----------------------------------------------------~~~~~~~~~~~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A          135 -----------------------------------------------------TFSEIRRIDFAGLTSLNELEIKALSLR  161 (549)
T ss_dssp             -----------------------------------------------------SCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             -----------------------------------------------------cccccCHhhhhcccccCeeeccCCccc
Confidence                                                                 222333333556777777777777777


Q ss_pred             CCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccC--c-hhccCCCCCcEEECcCCcCccccc
Q 044158          369 GPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSI--P-SSFGDMNSLIYLDLSNNQLTGEIP  445 (892)
Q Consensus       369 ~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~--p-~~~~~l~~L~~L~L~~n~l~~~i~  445 (892)
                      +..+..+..+++|++|+++.|.+. .+|..++..+++|++|++++|.+.+..  | .....+++|+.|++++|.+++..+
T Consensus       162 ~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  240 (549)
T 2z81_A          162 NYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF  240 (549)
T ss_dssp             EECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred             ccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence            777777778888888888888876 677776666889999999999887642  1 223456788888888887775554


Q ss_pred             hhHh---hcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCC-----c
Q 044158          446 EHLA---MGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGS-----I  517 (892)
Q Consensus       446 ~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~  517 (892)
                      ..+.   ..+++|+.+++++|.+.+...-.                  ......+..+++|+.|++.++.+...     +
T Consensus       241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~------------------~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l  302 (549)
T 2z81_A          241 NELLKLLRYILELSEVEFDDCTLNGLGDFN------------------PSESDVVSELGKVETVTIRRLHIPQFYLFYDL  302 (549)
T ss_dssp             HHHHGGGGGCTTCCEEEEESCEEECCSCCC------------------CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCC
T ss_pred             HHHHHHhhhhcccccccccccccccccccc------------------ccchhhhhhhcccccccccccccchhhhcccc
Confidence            4332   23455666666666554421000                  00012234455555666655554321     1


Q ss_pred             cccccCCCCCcEEECCCCcccCCCcccc-cCCCCCcEEeCCCCccCCCccc---ccccCCCCccEEEccCCccCccCC--
Q 044158          518 PTWMGNISFLDAIIMPDNHLEGPIPSEF-CQLDYLEILDLSKNNIAGRPLN---GAFSKCSYLLTLDLCNNRLNGNIP--  591 (892)
Q Consensus       518 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~---~~~~~~~~L~~L~L~~n~l~~~~p--  591 (892)
                      +..+...++|+.|++++|.+. .+|..+ ..+++|++|++++|++++ .+|   ..++.+++|++|++++|++++..+  
T Consensus       303 ~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  380 (549)
T 2z81_A          303 STVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVE-EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG  380 (549)
T ss_dssp             CHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCH-HHHHHHTCTTSSTTCCEEECTTSCCCCHHHHH
T ss_pred             hhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccc-ccccchhhhhccccCcEEEccCCcccccccch
Confidence            111223456777777777765 455544 467778888888887776 322   236677888888888888875432  


Q ss_pred             hhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccC
Q 044158          592 NWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNV  671 (892)
Q Consensus       592 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  671 (892)
                      ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+                             
T Consensus       381 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~-----------------------------  429 (549)
T 2z81_A          381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI-----------------------------  429 (549)
T ss_dssp             HHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS-----------------------------
T ss_pred             hhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh-----------------------------
Confidence            45778888888888888888 67878888889999999999886 333211                             


Q ss_pred             CCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEE
Q 044158          672 GPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESL  751 (892)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  751 (892)
                                               .++|+.||+++|++++.+    +.+++|++|+|++|+++ .+|. .+.+++|+.|
T Consensus       430 -------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L  478 (549)
T 2z81_A          430 -------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVM  478 (549)
T ss_dssp             -------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEE
T ss_pred             -------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEE
Confidence                                     125888999999998753    57889999999999998 6776 4678999999


Q ss_pred             ECCCCcCcccCCccccCCCCCCEEEccCCcccccCCc
Q 044158          752 DLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPE  788 (892)
Q Consensus       752 dLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~  788 (892)
                      ||++|++++.+|..+..+++|+.|++++|+++|.+|.
T Consensus       479 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          479 KISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             ECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             ecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            9999999999998899999999999999999998884

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7.5e-47  Score=443.88  Aligned_cols=333  Identities=19%  Similarity=0.265  Sum_probs=230.7

Q ss_pred             Cchhcc--CCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCc-ccc-ccccccccc------CCCcEEeecCccC
Q 044158          420 IPSSFG--DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNS-LQG-QLFSKKINL------TKLKRLNLDGNHF  489 (892)
Q Consensus       420 ~p~~~~--~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~~  489 (892)
                      +|..++  ++++|++|++++|++.+.+|..+ .++++|++|++++|+ +++ .+|..+..+      ++|++|++++|++
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l  317 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL  317 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence            444444  44444444444444444444333 234444444444444 444 444444333      6666666666666


Q ss_pred             cCCCCc--ccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCC-CcEEeCCCCccCCCcc
Q 044158          490 IGGIPE--SLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDY-LEILDLSKNNIAGRPL  566 (892)
Q Consensus       490 ~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~  566 (892)
                      + .+|.  .++++++|++|++++|+++|.+| .+..+++|+.|++++|+++ .+|..+..+++ |++|++++|.++  .+
T Consensus       318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~--~l  392 (636)
T 4eco_A          318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK--YI  392 (636)
T ss_dssp             S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS--SC
T ss_pred             C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc--cc
Confidence            6 5555  66666666666666666666666 6666666666666666666 56666777777 777777777776  34


Q ss_pred             cccccCCC--CccEEEccCCccCccCChhhh-------cCCCCCEEecccccccccCCc-cccCCCCCCEEEcCCCcCCC
Q 044158          567 NGAFSKCS--YLLTLDLCNNRLNGNIPNWMG-------RLSQLRYLILANNNFEGEVPL-RLCQLQKLRLLDLSHNNFSG  636 (892)
Q Consensus       567 ~~~~~~~~--~L~~L~L~~n~l~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~g  636 (892)
                      |..+..++  +|++|++++|++++.+|..+.       .+++|++|++++|++++ +|. .+..+++|++|+|++|+++ 
T Consensus       393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-  470 (636)
T 4eco_A          393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-  470 (636)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-
T ss_pred             chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-
Confidence            55555544  777788888877777777776       66788888888888874 444 3455788888888888887 


Q ss_pred             CCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCc
Q 044158          637 QIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPS  716 (892)
Q Consensus       637 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  716 (892)
                      .+|.........                                            ....+++|+.|++++|+++ .+|.
T Consensus       471 ~i~~~~~~~~~~--------------------------------------------~~~~l~~L~~L~Ls~N~l~-~lp~  505 (636)
T 4eco_A          471 EIPKNSLKDENE--------------------------------------------NFKNTYLLTSIDLRFNKLT-KLSD  505 (636)
T ss_dssp             BCCSSSSEETTE--------------------------------------------ECTTGGGCCEEECCSSCCC-BCCG
T ss_pred             CcCHHHhccccc--------------------------------------------cccccCCccEEECcCCcCC-ccCh
Confidence            666543321100                                            0012346888999999998 7888


Q ss_pred             ccc--ccCCCCEEEccCccCCccccccccCCCCCCEEEC------CCCcCcccCCccccCCCCCCEEEccCCcccccCCc
Q 044158          717 RIG--ELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDL------SYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPE  788 (892)
Q Consensus       717 ~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL------s~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~  788 (892)
                      .+.  .+++|+.|+|++|++++ +|..++++++|+.|+|      ++|++.+.+|..+.++++|+.|++++|++ +.+|.
T Consensus       506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~  583 (636)
T 4eco_A          506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE  583 (636)
T ss_dssp             GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred             hhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence            887  89999999999999997 8889999999999999      56889999999999999999999999999 78897


Q ss_pred             cccccCCCCcccccCCCCCCC
Q 044158          789 RIAQFATFDEDSYEGNPFLCG  809 (892)
Q Consensus       789 ~~~~~~~~~~~~~~gN~~lc~  809 (892)
                      .+.  ..+...++++||+.|-
T Consensus       584 ~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          584 KIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CCC--TTCCEEECCSCTTCEE
T ss_pred             hHh--CcCCEEECcCCCCccc
Confidence            533  6788889999999874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.5e-45  Score=419.96  Aligned_cols=351  Identities=20%  Similarity=0.201  Sum_probs=236.3

Q ss_pred             hhcCCCCCEEEccCCcCcCCCCCCCCCCCCc--cEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCC
Q 044158          351 LENNTNLRSIILANNSLSGPFRLPTRSRKNI--IALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMN  428 (892)
Q Consensus       351 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L--~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~  428 (892)
                      ++++++|++|++++|.+++   ..+..+++|  ++|++++|.+.+                       .+..|..+..+.
T Consensus       111 ~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~-----------------------~~~~~~~l~~l~  164 (520)
T 2z7x_B          111 FGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG-----------------------EKEDPEGLQDFN  164 (520)
T ss_dssp             GGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT-----------------------SSCCTTTTTTCC
T ss_pred             hccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc-----------------------cccccccccccc
Confidence            4566666666666666553   223333444  555555555400                       334444443332


Q ss_pred             -CCcEEECcCCcCccccchhHhhcCccCcEEEccCCc-------ccccccccccccCCCcEEeecCccCcCCCCcccc--
Q 044158          429 -SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNS-------LQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLS--  498 (892)
Q Consensus       429 -~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--  498 (892)
                       ....+++++|.+.+.++...+..+++|+.|++++|.       +.+.++ .+..+++|+.|++++|.+.+..+..+.  
T Consensus       165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~  243 (520)
T 2z7x_B          165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQL  243 (520)
T ss_dssp             EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred             cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHH
Confidence             122344455554444444444445555555555554       444433 455566666666666555432221111  


Q ss_pred             -cCCCCcEEEccCCcCCCCccccc-----cCCCCCcEEECCCCcccCCCc-ccccCC---CCCcEEeCCCCccCCCcccc
Q 044158          499 -NCSSLQGLYISDNDISGSIPTWM-----GNISFLDAIIMPDNHLEGPIP-SEFCQL---DYLEILDLSKNNIAGRPLNG  568 (892)
Q Consensus       499 -~l~~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~L~L~~n~l~~~~~-~~~~~l---~~L~~L~Ls~n~l~~~~~~~  568 (892)
                       .+++|++|++++|++++.+|..+     ..++.|+.++++.|.+  .+| ..+..+   .+|+.|++++|.+.....  
T Consensus       244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--  319 (520)
T 2z7x_B          244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--  319 (520)
T ss_dssp             HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--
T ss_pred             hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc--
Confidence             13466666666666666666665     6666677777777766  334 334333   568888888888875332  


Q ss_pred             cccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccc--cCCccccCCCCCCEEEcCCCcCCCCCCccccCCc
Q 044158          569 AFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEG--EVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTS  646 (892)
Q Consensus       569 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~  646 (892)
                       +..+++|++|++++|++++.+|.+++.+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|....   
T Consensus       320 -~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~---  395 (520)
T 2z7x_B          320 -PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC---  395 (520)
T ss_dssp             -CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC---
T ss_pred             -hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh---
Confidence             2677889999999999988888888889999999999999886  5567788899999999999998876664311   


Q ss_pred             ccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCE
Q 044158          647 LHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHT  726 (892)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  726 (892)
                                                                      ..+++|+.|++++|++++.+|..+.  ++|+.
T Consensus       396 ------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~  425 (520)
T 2z7x_B          396 ------------------------------------------------SWTKSLLSLNMSSNILTDTIFRCLP--PRIKV  425 (520)
T ss_dssp             ------------------------------------------------CCCTTCCEEECCSSCCCGGGGGSCC--TTCCE
T ss_pred             ------------------------------------------------ccCccCCEEECcCCCCCcchhhhhc--ccCCE
Confidence                                                            1234688899999999888887765  78999


Q ss_pred             EEccCccCCccccccccCCCCCCEEECCCCcCcccCCcc-ccCCCCCCEEEccCCcccccCCc
Q 044158          727 LNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPR-LVELNALAVFTVAHNNLSGKIPE  788 (892)
Q Consensus       727 L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~l~ls~N~l~g~ip~  788 (892)
                      |+|++|+++ .+|..+..+++|+.||+++|+++ .+|.. +..+++|+.|++++|+++|.++.
T Consensus       426 L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          426 LDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             EECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             EECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            999999999 78888889999999999999999 56665 88999999999999999987763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.5e-44  Score=424.90  Aligned_cols=358  Identities=20%  Similarity=0.278  Sum_probs=177.5

Q ss_pred             CcCCCCCchhhhhcCCCCcEEECcCCcCCc-----------------cCchhcc--CCCCCcEEECcCCcCccccchhHh
Q 044158          389 NKLQGHIPVEIGKVLPNLGFLTISFNAFNG-----------------SIPSSFG--DMNSLIYLDLSNNQLTGEIPEHLA  449 (892)
Q Consensus       389 n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~-----------------~~p~~~~--~l~~L~~L~L~~n~l~~~i~~~~~  449 (892)
                      |++++ +|..+.. +++|++|+|++|.+++                 .+|..++  ++++|++|+|++|++.+.+|..+ 
T Consensus       435 N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-  511 (876)
T 4ecn_A          435 NRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-  511 (876)
T ss_dssp             CEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-
T ss_pred             Ccccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-
Confidence            44443 5554443 5555555555555554                 2455544  55555555555555555555433 


Q ss_pred             hcCccCcEEEccCCc-ccc-cccccccccC-------CCcEEeecCccCcCCCCc--ccccCCCCcEEEccCCcCCCCcc
Q 044158          450 MGCFNLEYLLLSNNS-LQG-QLFSKKINLT-------KLKRLNLDGNHFIGGIPE--SLSNCSSLQGLYISDNDISGSIP  518 (892)
Q Consensus       450 ~~~~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~  518 (892)
                      .++++|+.|++++|+ +++ .+|..+..++       +|+.|++++|.+. .+|.  .+.++++|++|++++|+++ .+|
T Consensus       512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp  589 (876)
T 4ecn_A          512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE  589 (876)
T ss_dssp             GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred             hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence            345555555555555 555 4454444333       5555555555555 4454  5555555555555555555 444


Q ss_pred             ccccCCCCCcEEECCCCcccCCCcccccCCCC-CcEEeCCCCccCCCcccccccCCCC--ccEEEccCCccCccCChh--
Q 044158          519 TWMGNISFLDAIIMPDNHLEGPIPSEFCQLDY-LEILDLSKNNIAGRPLNGAFSKCSY--LLTLDLCNNRLNGNIPNW--  593 (892)
Q Consensus       519 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~~~--L~~L~L~~n~l~~~~p~~--  593 (892)
                       .++.+++|+.|++++|.++ .+|..+..+++ |++|++++|.++  .+|..+..++.  |+.|++++|++.+.+|..  
T Consensus       590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~  665 (876)
T 4ecn_A          590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC  665 (876)
T ss_dssp             -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred             -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCCccccchh
Confidence             5555555555555555555 45555555555 555555555555  23344444332  555555555555544321  


Q ss_pred             -hh--cCCCCCEEecccccccccCCccc-cCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccc
Q 044158          594 -MG--RLSQLRYLILANNNFEGEVPLRL-CQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSY  669 (892)
Q Consensus       594 -~~--~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  669 (892)
                       +.  .+++|+.|++++|+++ .+|..+ ..+++|+.|+|++|+++ .+|..+......                     
T Consensus       666 ~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~---------------------  722 (876)
T 4ecn_A          666 SMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDG---------------------  722 (876)
T ss_dssp             CTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTS---------------------
T ss_pred             hhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccc---------------------
Confidence             11  2235555555555555 333333 24555555555555555 444433211100                     


Q ss_pred             cCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCcccc--ccCCCCEEEccCccCCccccccccCCCC
Q 044158          670 NVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIG--ELIRIHTLNLSRNNLTGTIPVTFSNLRQ  747 (892)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  747 (892)
                                             ....+++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..++++++
T Consensus       723 -----------------------~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~  777 (876)
T 4ecn_A          723 -----------------------NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQ  777 (876)
T ss_dssp             -----------------------CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTT
T ss_pred             -----------------------cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCC
Confidence                                   0001223455555555555 4444444  45555555555555554 4445555555


Q ss_pred             CCEEECCC------CcCcccCCccccCCCCCCEEEccCCcccccCCccccccCCCCcccccCCCC
Q 044158          748 VESLDLSY------NNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPF  806 (892)
Q Consensus       748 L~~LdLs~------N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~  806 (892)
                      |+.|+|++      |++.+.+|..+.++++|+.|++++|++ +.+|..+.  ..+...++++||+
T Consensus       778 L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l  839 (876)
T 4ecn_A          778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN  839 (876)
T ss_dssp             CCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred             CCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence            55555543      444555555555555555555555555 44444221  2444444455543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5.5e-42  Score=406.79  Aligned_cols=540  Identities=21%  Similarity=0.195  Sum_probs=318.5

Q ss_pred             EEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEe
Q 044158           53 SLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLD  132 (892)
Q Consensus        53 ~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~  132 (892)
                      +.|=++.+++.++..     +  -+++++|||++|+|+++.+.+|.++++|++|+|++|.++ .++.++|.++++|++|+
T Consensus        35 ~~~c~~~~l~~vP~~-----l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~  106 (635)
T 4g8a_A           35 TYQCMELNFYKIPDN-----L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLI  106 (635)
T ss_dssp             EEECTTSCCSSCCSS-----S--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred             EEECCCCCcCccCCC-----C--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEE
Confidence            345555556555432     1  147888888888888777778888888888888888887 56666788888888888


Q ss_pred             CCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccC
Q 044158          133 MSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDH  212 (892)
Q Consensus       133 L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~  212 (892)
                      |++|+++++. +..|.++++|++|++++|.++..  .+..++++++|++|++++|.+.+.... ..++.+++|++|++++
T Consensus       107 Ls~N~l~~l~-~~~f~~L~~L~~L~Ls~N~l~~l--~~~~~~~L~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~  182 (635)
T 4g8a_A          107 LTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASL--ENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSS  182 (635)
T ss_dssp             CTTCCCCEEC-GGGGTTCTTCCEEECTTSCCCCS--TTCCCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECCS
T ss_pred             ccCCcCCCCC-HHHhcCCCCCCEEECCCCcCCCC--ChhhhhcCcccCeeccccCccccCCCc-hhhccchhhhhhcccC
Confidence            8888887754 34578888888888888887764  334567777777777777766543211 2455666666666666


Q ss_pred             CcCccCccccccCCCCC----cEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCcc
Q 044158          213 NDFIGSLPWCLANLTSL----RVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQ  288 (892)
Q Consensus       213 n~l~~~~~~~l~~l~~L----~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~  288 (892)
                      |.+++..+..+..++++    ..++++.|.+.. +.+.. .....++.+                               
T Consensus       183 N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~-i~~~~-~~~~~~~~l-------------------------------  229 (635)
T 4g8a_A          183 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGA-FKEIRLHKL-------------------------------  229 (635)
T ss_dssp             SCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE-ECTTT-TTTCEEEEE-------------------------------
T ss_pred             ccccccccccccchhhhhhhhhhhhcccCcccc-cCccc-ccchhhhhh-------------------------------
Confidence            66666555554443322    244455444432 11111 111122222                               


Q ss_pred             ccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCc
Q 044158          289 IFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLS  368 (892)
Q Consensus       289 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~  368 (892)
                                                                     ++.++.....++...+..+..++...+..+...
T Consensus       230 -----------------------------------------------~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~  262 (635)
T 4g8a_A          230 -----------------------------------------------TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR  262 (635)
T ss_dssp             -----------------------------------------------EEESCCSSHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred             -----------------------------------------------hhhcccccccccchhhcCCcccccccccccccc
Confidence                                                           233222222233333444455544443322211


Q ss_pred             CCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCC---ccCchhccCCCCCcEEECcCCcCccccc
Q 044158          369 GPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFN---GSIPSSFGDMNSLIYLDLSNNQLTGEIP  445 (892)
Q Consensus       369 ~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~---~~~p~~~~~l~~L~~L~L~~n~l~~~i~  445 (892)
                      ....                  +. ......+.....+...++..+...   ...+..+..+.+++.+++.++.+. .++
T Consensus       263 ~~~~------------------l~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~  322 (635)
T 4g8a_A          263 NEGN------------------LE-KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVK  322 (635)
T ss_dssp             TSCC------------------CS-CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECG
T ss_pred             cccc------------------cc-cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc-ccc
Confidence            1000                  00 000000011222333332222111   112223344455555655555554 222


Q ss_pred             hhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCC
Q 044158          446 EHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNIS  525 (892)
Q Consensus       446 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  525 (892)
                      ..  ....+|+.|++.+|.+.+..+.   .++.|+.+++..|.....  .....+++|+.|++++|.+...         
T Consensus       323 ~~--~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~---------  386 (635)
T 4g8a_A          323 DF--SYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFK---------  386 (635)
T ss_dssp             GG--GSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEE---------
T ss_pred             cc--ccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccc---------
Confidence            21  2344555555555554433221   234455555555544322  1223445555555555544311         


Q ss_pred             CCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCC-hhhhcCCCCCEEe
Q 044158          526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP-NWMGRLSQLRYLI  604 (892)
Q Consensus       526 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~  604 (892)
                                   +..+..+..+.+|+.++++.|....  .+..+..+++|+.++++.|......+ ..+..+++++.++
T Consensus       387 -------------~~~~~~~~~~~~L~~L~~~~~~~~~--~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~  451 (635)
T 4g8a_A          387 -------------GCCSQSDFGTISLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD  451 (635)
T ss_dssp             -------------EECCHHHHSCSCCCEEECCSCSEEE--ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred             -------------cccccchhhhhhhhhhhcccccccc--ccccccccccccchhhhhcccccccccccccccccccccc
Confidence                         1233444455566666666665543  23455666677777776666554443 3556677777777


Q ss_pred             cccccccccCCccccCCCCCCEEEcCCCcCCC-CCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEe
Q 044158          605 LANNNFEGEVPLRLCQLQKLRLLDLSHNNFSG-QIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDF  683 (892)
Q Consensus       605 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (892)
                      ++.|.+.+..+..+..+++|+.|++++|++.+ .+|..+..                                       
T Consensus       452 ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~---------------------------------------  492 (635)
T 4g8a_A          452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE---------------------------------------  492 (635)
T ss_dssp             CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT---------------------------------------
T ss_pred             ccccccccccccccccchhhhhhhhhhcccccccCchhhhh---------------------------------------
Confidence            77777777777777777777777777776442 23333222                                       


Q ss_pred             eecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCC
Q 044158          684 TTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIP  763 (892)
Q Consensus       684 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip  763 (892)
                                   +++|+.|||++|++++.+|..|+++++|++|+|++|+|++.+|..|+++++|+.|||++|+|++.+|
T Consensus       493 -------------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  559 (635)
T 4g8a_A          493 -------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  559 (635)
T ss_dssp             -------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred             -------------ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence                         3357778888888888888889999999999999999998888899999999999999999999999


Q ss_pred             ccccCC-CCCCEEEccCCcccccCC
Q 044158          764 PRLVEL-NALAVFTVAHNNLSGKIP  787 (892)
Q Consensus       764 ~~l~~l-~~L~~l~ls~N~l~g~ip  787 (892)
                      ..+..+ ++|++|++++|++++...
T Consensus       560 ~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          560 QELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             SCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             HHHHhhhCcCCEEEeeCCCCcccCC
Confidence            999888 689999999999988654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.8e-43  Score=403.65  Aligned_cols=458  Identities=20%  Similarity=0.194  Sum_probs=303.8

Q ss_pred             cEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEE
Q 044158           52 ESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGL  131 (892)
Q Consensus        52 ~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L  131 (892)
                      ++||+++|.++.++..     +.  ++|++|+|++|.+++..+..|.++++|++|++++|.+++ +++..|+++++|++|
T Consensus         3 ~~l~ls~n~l~~ip~~-----~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L   74 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKD-----LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYL   74 (520)
T ss_dssp             CEEECTTSCCSSCCCS-----CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE-EEGGGGTTCTTCCEE
T ss_pred             ceEecCCCCccccccc-----cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCC-cChHHhhcccCCCEE
Confidence            4566777776654432     22  677777777777776666677777777777777777763 333367777777777


Q ss_pred             eCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCC--cEEE
Q 044158          132 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHL--QELY  209 (892)
Q Consensus       132 ~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L--~~L~  209 (892)
                      ++++|+++++  +..  .+++|++|++++|.+++. ..+..++.+++|++|++++|.+.+.     .+..+++|  ++|+
T Consensus        75 ~Ls~N~l~~l--p~~--~l~~L~~L~L~~N~l~~~-~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~  144 (520)
T 2z7x_B           75 DLSHNKLVKI--SCH--PTVNLKHLDLSFNAFDAL-PICKEFGNMSQLKFLGLSTTHLEKS-----SVLPIAHLNISKVL  144 (520)
T ss_dssp             ECCSSCCCEE--ECC--CCCCCSEEECCSSCCSSC-CCCGGGGGCTTCCEEEEEESSCCGG-----GGGGGTTSCEEEEE
T ss_pred             ecCCCceeec--Ccc--ccCCccEEeccCCccccc-cchhhhccCCcceEEEecCcccchh-----hccccccceeeEEE
Confidence            7777777653  222  677777777777777652 1345677777777777777766542     35556666  7777


Q ss_pred             ccCCcC--ccCccccccCCC-CCcEEeCCCCCcccccCCCcccccccCcEEeccCcc-------ccCCCCchhhcCCCCc
Q 044158          210 IDHNDF--IGSLPWCLANLT-SLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNH-------FQIPMSLEPFFNYSKL  279 (892)
Q Consensus       210 L~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~~~~~~~l~~L  279 (892)
                      +++|.+  .+..|..+..++ +...+++++|.+.+.+....+..+++|+.|++++|.       +.+.++  .+..+++|
T Consensus       145 l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L  222 (520)
T 2z7x_B          145 LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKL  222 (520)
T ss_dssp             EEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTC
T ss_pred             eecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccch
Confidence            777777  666666666554 344567777777776656667777888888887775       433322  46677777


Q ss_pred             cEEEccCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhh----hcCC
Q 044158          280 KIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLL----ENNT  355 (892)
Q Consensus       280 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~----~~~~  355 (892)
                      +.+++.++.+.+.....                         ++... ..++|++|++++|.+.|.+|..++    +.++
T Consensus       223 ~~L~l~~~~l~~~~~~~-------------------------~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~  276 (520)
T 2z7x_B          223 SNLTLNNIETTWNSFIR-------------------------ILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK  276 (520)
T ss_dssp             CEEEEEEEEEEHHHHHH-------------------------HHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCC
T ss_pred             hhccccccccCHHHHHH-------------------------HHHHh-hhCcccEEEeecccccCccccchhhcccccCc
Confidence            77777776654321111                         00111 123566666666666666666532    5566


Q ss_pred             CCCEEEccCCcCcCCCCCCCCCC---CCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcE
Q 044158          356 NLRSIILANNSLSGPFRLPTRSR---KNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIY  432 (892)
Q Consensus       356 ~L~~L~L~~n~l~~~~~~~~~~~---~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~  432 (892)
                      .|+.+++++|.+ ......+..+   .+|+.|++++|.+.+ ++  ....+++|++|++++|.+++..|..++.+++|++
T Consensus       277 ~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  352 (520)
T 2z7x_B          277 ALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVH-ML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELET  352 (520)
T ss_dssp             EEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCC-CC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCE
T ss_pred             eeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccc-cc--chhhCCcccEEEeECCccChhhhhhhccCCCCCE
Confidence            666666666666 1111111111   457777777777652 22  1123678888888888888777777888888888


Q ss_pred             EECcCCcCcc--ccchhHhhcCccCcEEEccCCcccccccc-cccccCCCcEEeecCccCcCCCCcccccCCCCcEEEcc
Q 044158          433 LDLSNNQLTG--EIPEHLAMGCFNLEYLLLSNNSLQGQLFS-KKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYIS  509 (892)
Q Consensus       433 L~L~~n~l~~--~i~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~  509 (892)
                      |++++|++++  .+|.. +..+++|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+.  ++|++|+++
T Consensus       353 L~L~~N~l~~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls  429 (520)
T 2z7x_B          353 LILQMNQLKELSKIAEM-TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLH  429 (520)
T ss_dssp             EECCSSCCCBHHHHHHH-HTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECC
T ss_pred             EEccCCccCccccchHH-HhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECC
Confidence            8888888873  23333 35778888888888888874444 477788888888888888777666554  688888888


Q ss_pred             CCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCC
Q 044158          510 DNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG  563 (892)
Q Consensus       510 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  563 (892)
                      +|+++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|.+++
T Consensus       430 ~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          430 SNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             SSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence            88888 677777788888888888888884333348888899999999998886

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.4e-41  Score=400.01  Aligned_cols=516  Identities=22%  Similarity=0.199  Sum_probs=385.3

Q ss_pred             CCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCC
Q 044158           49 QQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNL  128 (892)
Q Consensus        49 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L  128 (892)
                      +++++|||++|.|+++++    .+|.++++|++|+|++|+|+++.+.+|.++++|++|+|++|+++ .+|...|.++++|
T Consensus        52 ~~~~~LdLs~N~i~~l~~----~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L  126 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSL  126 (635)
T ss_dssp             TTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTC
T ss_pred             cCCCEEEeeCCCCCCCCH----HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCC
Confidence            479999999999987765    35899999999999999999888889999999999999999998 6787789999999


Q ss_pred             CEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCC----
Q 044158          129 EGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAH----  204 (892)
Q Consensus       129 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~----  204 (892)
                      ++|+|++|+++++. +..|+++++|++|++++|.++... .+..++.+++|++|++++|.+.+..+.  .+..+.+    
T Consensus       127 ~~L~Ls~N~l~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~--~l~~L~~l~~~  202 (635)
T 4g8a_A          127 QKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPLL  202 (635)
T ss_dssp             CEEECTTSCCCCST-TCCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEECGG--GGHHHHTCTTC
T ss_pred             CEEECCCCcCCCCC-hhhhhcCcccCeeccccCccccCC-CchhhccchhhhhhcccCccccccccc--cccchhhhhhh
Confidence            99999999999875 445999999999999999997642 467788999999999999999876554  4444433    


Q ss_pred             CcEEEccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCC-----CchhhcCCCCc
Q 044158          205 LQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPM-----SLEPFFNYSKL  279 (892)
Q Consensus       205 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-----~~~~~~~l~~L  279 (892)
                      ...++++.|.+....+..+ ....++.+++.+|.....+....+..+..++...+..+......     ....+..+..+
T Consensus       203 ~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l  281 (635)
T 4g8a_A          203 NLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL  281 (635)
T ss_dssp             CCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred             hhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence            3478899998876555544 44567888888886654333344556666666555433222110     01111111111


Q ss_pred             cEEEccCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCE
Q 044158          280 KIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRS  359 (892)
Q Consensus       280 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~  359 (892)
                      ....+..+..                                                  .......+. .+.....++.
T Consensus       282 ~~~~l~~~~~--------------------------------------------------~~~~~~~~~-~~~~~~~l~~  310 (635)
T 4g8a_A          282 TIEEFRLAYL--------------------------------------------------DYYLDGIID-LFNCLTNVSS  310 (635)
T ss_dssp             EEEEEEEECC--------------------------------------------------CSCEEECTT-TTGGGTTCSE
T ss_pred             hhhhhhhhhh--------------------------------------------------cccccchhh-hhhhhccccc
Confidence            1111111100                                                  000001111 1334556666


Q ss_pred             EEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCc
Q 044158          360 IILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQ  439 (892)
Q Consensus       360 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~  439 (892)
                      +.+.++.+....  .+.....++.|++.+|.+. .++..   .++.|+.+++..|.....  .....+++|+.+++++|.
T Consensus       311 l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~-~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~  382 (635)
T 4g8a_A          311 FSLVSVTIERVK--DFSYNFGWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNG  382 (635)
T ss_dssp             EEEESCEEEECG--GGGSCCCCSEEEEESCEES-SCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSC
T ss_pred             cccccccccccc--ccccchhhhhhhccccccc-CcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccc
Confidence            666666554422  2344556777777777765 33322   256788888888776533  234567888888888887


Q ss_pred             Ccc--ccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCC-cccccCCCCcEEEccCCcCCCC
Q 044158          440 LTG--EIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIP-ESLSNCSSLQGLYISDNDISGS  516 (892)
Q Consensus       440 l~~--~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~  516 (892)
                      +..  ..+... ..+.+|+.++++.+..... +..+..+++|+.+++..+......+ ..+..+++++.++++.|.+.+.
T Consensus       383 l~~~~~~~~~~-~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~  460 (635)
T 4g8a_A          383 LSFKGCCSQSD-FGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA  460 (635)
T ss_dssp             CBEEEECCHHH-HSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEEC
T ss_pred             cccccccccch-hhhhhhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccccccccccc
Confidence            752  234333 4678899999988887653 4567788999999998887766554 5678899999999999999988


Q ss_pred             ccccccCCCCCcEEECCCCcc-cCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhh
Q 044158          517 IPTWMGNISFLDAIIMPDNHL-EGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMG  595 (892)
Q Consensus       517 ~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~  595 (892)
                      .+..+..++.++.|++++|.+ .+..|..|..+++|++|+|++|++++ ..|..|.++++|++|+|++|++++..|..|+
T Consensus       461 ~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~-l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~  539 (635)
T 4g8a_A          461 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK  539 (635)
T ss_dssp             CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCBCCCGGGT
T ss_pred             cccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC-cChHHHcCCCCCCEEECCCCcCCCCChhHHh
Confidence            888999999999999999975 44577889999999999999999998 4578899999999999999999988889999


Q ss_pred             cCCCCCEEecccccccccCCccccCC-CCCCEEEcCCCcCCC
Q 044158          596 RLSQLRYLILANNNFEGEVPLRLCQL-QKLRLLDLSHNNFSG  636 (892)
Q Consensus       596 ~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~g  636 (892)
                      ++++|++|+|++|++++..|..+..+ ++|++|+|++|+++.
T Consensus       540 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          540 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            99999999999999999999999888 689999999999984

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.5e-41  Score=393.14  Aligned_cols=352  Identities=17%  Similarity=0.157  Sum_probs=228.0

Q ss_pred             hhcCCCCCEEEccCCcCcCCCCCCCCCCCCc--cEEEccCCcC--CCCCchhhhhcCC-CCcEEECcCCcCCccCch-hc
Q 044158          351 LENNTNLRSIILANNSLSGPFRLPTRSRKNI--IALDISYNKL--QGHIPVEIGKVLP-NLGFLTISFNAFNGSIPS-SF  424 (892)
Q Consensus       351 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L--~~L~l~~n~l--~~~i~~~~~~~l~-~L~~L~L~~n~~~~~~p~-~~  424 (892)
                      ++++++|++|++++|.+++   ..+..+++|  ++|++++|.+  ++..|..+.. +. ..-.++++.|.+.+.++. .+
T Consensus       142 ~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~-l~~~~l~l~l~~n~~~~~~~~~~~  217 (562)
T 3a79_B          142 FGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQI-PNTTVLHLVFHPNSLFSVQVNMSV  217 (562)
T ss_dssp             GGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE-CCEEEEEEEECSSSCCCCCCEEEE
T ss_pred             hcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccc-cCcceEEEEecCccchhhhhhhcc
Confidence            5667777777777777764   233333333  6666666666  4444433322 11 111334455554443332 23


Q ss_pred             cCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCC----CcccccC
Q 044158          425 GDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGI----PESLSNC  500 (892)
Q Consensus       425 ~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~----~~~~~~l  500 (892)
                      ..+++|+.+++++|+..-.                    .+.+ ....+..+++|+.+++.++.+.+..    +.. ...
T Consensus       218 ~~l~~L~~L~l~~n~~~~~--------------------~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~  275 (562)
T 3a79_B          218 NALGHLQLSNIKLNDENCQ--------------------RLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWP  275 (562)
T ss_dssp             SSEEEEEEEEEECCSTTHH--------------------HHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTT
T ss_pred             cccceEEEecccccccccc--------------------hHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhc
Confidence            3445555555555431000                    0111 1122334444444444444433211    111 112


Q ss_pred             CCCcEEEccCCcCCCCccccc-----cCCCCCcEEECCCCcccCCCc-cccc---CCCCCcEEeCCCCccCCCccccccc
Q 044158          501 SSLQGLYISDNDISGSIPTWM-----GNISFLDAIIMPDNHLEGPIP-SEFC---QLDYLEILDLSKNNIAGRPLNGAFS  571 (892)
Q Consensus       501 ~~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~L~L~~n~l~~~~~-~~~~---~l~~L~~L~Ls~n~l~~~~~~~~~~  571 (892)
                      ++|++|++++|.+++.+|..+     ..++.|+.+++..+.+  .+| ..+.   ...+|++|++++|.+....   ...
T Consensus       276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~  350 (562)
T 3a79_B          276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV---CPP  350 (562)
T ss_dssp             SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC---CCS
T ss_pred             ccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc---Ccc
Confidence            355555555555555555544     4444555555555554  233 2222   1256888999988886533   226


Q ss_pred             CCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccc--cCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccc
Q 044158          572 KCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEG--EVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHR  649 (892)
Q Consensus       572 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~  649 (892)
                      .+++|++|++++|++++.+|..++.+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|....      
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~------  424 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC------  424 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC------
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh------
Confidence            78899999999999998888889999999999999999986  3356788999999999999999876765321      


Q ss_pred             cccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEc
Q 044158          650 EEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNL  729 (892)
Q Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  729 (892)
                                                                   ..+++|+.|++++|++++.+|..+.  ++|+.|+|
T Consensus       425 ---------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L  457 (562)
T 3a79_B          425 ---------------------------------------------AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDL  457 (562)
T ss_dssp             ---------------------------------------------CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEEC
T ss_pred             ---------------------------------------------cCcccCCEEECCCCCCCcchhhhhc--CcCCEEEC
Confidence                                                         1234689999999999988887665  78999999


Q ss_pred             cCccCCccccccccCCCCCCEEECCCCcCcccCCcc-ccCCCCCCEEEccCCcccccCCc
Q 044158          730 SRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPR-LVELNALAVFTVAHNNLSGKIPE  788 (892)
Q Consensus       730 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~l~ls~N~l~g~ip~  788 (892)
                      ++|+++ .+|..+..+++|+.|||++|+++ .+|.. +..+++|+.+++++|+++|.+|.
T Consensus       458 ~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          458 HNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             CCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            999999 78888789999999999999999 56665 89999999999999999998774

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.1e-41  Score=390.49  Aligned_cols=466  Identities=22%  Similarity=0.242  Sum_probs=308.3

Q ss_pred             CCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCC
Q 044158           49 QQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNL  128 (892)
Q Consensus        49 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L  128 (892)
                      ...+++|++++.+++++..     +  .++|++|+|++|.+++..+..|.++++|++|++++|.+++ +++..|.++++|
T Consensus        31 ~~~~~l~ls~~~L~~ip~~-----~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L  102 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPKD-----L--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDL  102 (562)
T ss_dssp             --CCEEECTTSCCCSCCTT-----S--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCTTC
T ss_pred             CCCcEEEcCCCCCccCCCC-----C--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc-CCHHHhCCCCCC
Confidence            3446777777777765432     2  2677788888888777777777788888888888887773 444467777888


Q ss_pred             CEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCC--c
Q 044158          129 EGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHL--Q  206 (892)
Q Consensus       129 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L--~  206 (892)
                      ++|++++|.++.+  +..  .+++|++|++++|.++... .+..++++++|++|++++|.+.+.     .+..+++|  +
T Consensus       103 ~~L~Ls~N~l~~l--p~~--~l~~L~~L~Ls~N~l~~l~-~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~  172 (562)
T 3a79_B          103 EYLDVSHNRLQNI--SCC--PMASLRHLDLSFNDFDVLP-VCKEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHLHLS  172 (562)
T ss_dssp             CEEECTTSCCCEE--CSC--CCTTCSEEECCSSCCSBCC-CCGGGGGCTTCCEEEEECSBCCTT-----TTGGGTTSCEE
T ss_pred             CEEECCCCcCCcc--Ccc--ccccCCEEECCCCCccccC-chHhhcccCcccEEecCCCccccC-----chhhhhhceee
Confidence            8888888877754  222  6777777777777776531 235677777777777777776542     23444444  8


Q ss_pred             EEEccCCcC--ccCccccccCCC--CCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEE
Q 044158          207 ELYIDHNDF--IGSLPWCLANLT--SLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIF  282 (892)
Q Consensus       207 ~L~L~~n~l--~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l  282 (892)
                      +|++++|.+  ++..|..+..++  .+ .+++++|.+.+.+....+..+++|+.+++++|+...    .           
T Consensus       173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~----~-----------  236 (562)
T 3a79_B          173 CILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC----Q-----------  236 (562)
T ss_dssp             EEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTH----H-----------
T ss_pred             EEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEeccccccccc----c-----------
Confidence            888888777  666666665543  22 345566665554433344455555555555542110    0           


Q ss_pred             EccCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEc
Q 044158          283 HGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIIL  362 (892)
Q Consensus       283 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L  362 (892)
                                                                                .+.+.++  .+..++.|+.+++
T Consensus       237 ----------------------------------------------------------~l~~~~~--~l~~l~~L~~L~L  256 (562)
T 3a79_B          237 ----------------------------------------------------------RLMTFLS--ELTRGPTLLNVTL  256 (562)
T ss_dssp             ----------------------------------------------------------HHHHHHH--HHHSCSSCEEEEE
T ss_pred             ----------------------------------------------------------hHHHHHH--HHhccCcceEEEe
Confidence                                                                      0000011  1233444444443


Q ss_pred             cCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhc-----cCCCCCcEEECcC
Q 044158          363 ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSF-----GDMNSLIYLDLSN  437 (892)
Q Consensus       363 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-----~~l~~L~~L~L~~  437 (892)
                      .++.+.                   ++.+. .++....  .++|++|++++|.+.+.+|..+     ..++.|+.+++..
T Consensus       257 ~~~~l~-------------------~~~~~-~~~~~~~--~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~  314 (562)
T 3a79_B          257 QHIETT-------------------WKCSV-KLFQFFW--PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKN  314 (562)
T ss_dssp             EEEEEC-------------------HHHHH-HHHHHHT--TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEE
T ss_pred             cCCcCc-------------------HHHHH-HHHHhhh--cccccEEEEeccEeeccccchhhhcccccchheehhhccc
Confidence            332221                   12221 1222221  3466666666666666666555     5555666666666


Q ss_pred             CcCccccchhHhhc---CccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCC
Q 044158          438 NQLTGEIPEHLAMG---CFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDIS  514 (892)
Q Consensus       438 n~l~~~i~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  514 (892)
                      +.+  .+|......   ..+|++|++++|.+.....  ...+++|++|++++|++++..|..+..+++|++|++++|+++
T Consensus       315 ~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  390 (562)
T 3a79_B          315 QVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK  390 (562)
T ss_dssp             CCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC
T ss_pred             cee--ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC
Confidence            665  455322211   2568888888887764321  256788899999999988888888888999999999999888


Q ss_pred             CC--ccccccCCCCCcEEECCCCcccCCCcc-cccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCC
Q 044158          515 GS--IPTWMGNISFLDAIIMPDNHLEGPIPS-EFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP  591 (892)
Q Consensus       515 ~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p  591 (892)
                      +.  +|..+..+++|+.|++++|++++.+|. .+..+++|++|++++|++++ ..+..+.  ++|++|++++|+++ .+|
T Consensus       391 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~--~~L~~L~L~~N~l~-~ip  466 (562)
T 3a79_B          391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG-SVFRCLP--PKVKVLDLHNNRIM-SIP  466 (562)
T ss_dssp             BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG-GGGSSCC--TTCSEEECCSSCCC-CCC
T ss_pred             CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc-chhhhhc--CcCCEEECCCCcCc-ccC
Confidence            63  356788889999999999999874554 47788999999999999986 4343332  68999999999998 677


Q ss_pred             hhhhcCCCCCEEecccccccccCCcc-ccCCCCCCEEEcCCCcCCCCCC
Q 044158          592 NWMGRLSQLRYLILANNNFEGEVPLR-LCQLQKLRLLDLSHNNFSGQIP  639 (892)
Q Consensus       592 ~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~g~~p  639 (892)
                      ..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++++..|
T Consensus       467 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          467 KDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             hhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            77779999999999999999 45555 8899999999999999987654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.9e-40  Score=372.07  Aligned_cols=372  Identities=21%  Similarity=0.173  Sum_probs=248.7

Q ss_pred             CEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccC-chhccCCCCCcEEECc
Q 044158          358 RSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSI-PSSFGDMNSLIYLDLS  436 (892)
Q Consensus       358 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~L~  436 (892)
                      +.++.+++.++....    ..++|++|++++|.+++..|..+. .+++|++|++++|.+.+.+ +..|.++++|++|+++
T Consensus        13 ~~~~c~~~~l~~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLHQVPE----LPAHVNYVDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCSSCCC----CCTTCCEEECCSSCCCEECTTTTS-SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcccCCC----CCCccCEEEecCCccCcCChhHhc-cCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            456666666654332    226677777777777744444443 3777777777777776433 4567777777777777


Q ss_pred             CCcCccccchhHhhcCccCcEEEccCCccccccccc--ccccCCCcEEeecCccCcCCCCcc-cccCCCCcEEEccCCcC
Q 044158          437 NNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSK--KINLTKLKRLNLDGNHFIGGIPES-LSNCSSLQGLYISDNDI  513 (892)
Q Consensus       437 ~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l  513 (892)
                      +|++++..|.. +.++++|++|++++|.+++..+..  +..+++|++|++++|.+.+..|.. +.++++|++|++++|++
T Consensus        88 ~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           88 YNQFLQLETGA-FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TCTTCEECTTT-TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCccCccChhh-ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            77777433433 356777777777777777654444  677777777777777777666654 67777777777777777


Q ss_pred             CCCccccccCC--CCCcEEECCCCcccCCCccc--------ccCCCCCcEEeCCCCccCCCcccccccCC---CCccEEE
Q 044158          514 SGSIPTWMGNI--SFLDAIIMPDNHLEGPIPSE--------FCQLDYLEILDLSKNNIAGRPLNGAFSKC---SYLLTLD  580 (892)
Q Consensus       514 ~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~---~~L~~L~  580 (892)
                      ++..+..+..+  ..|+.|++++|.+.+..+..        +..+++|++|++++|++++ ..+..+...   ++|+.|+
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~L~~L~  245 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE-SMAKRFFDAIAGTKIQSLI  245 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH-HHHHHHHHHTTTCCEEEEE
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc-cchhhhhccccccceeeEe
Confidence            77777666655  56777777777776544432        2345677777777777765 344444332   6777777


Q ss_pred             ccCCccCcc----------CChhhhc--CCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccc
Q 044158          581 LCNNRLNGN----------IPNWMGR--LSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLH  648 (892)
Q Consensus       581 L~~n~l~~~----------~p~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~  648 (892)
                      +++|.+.+.          .+..+..  .++|++|++++|++++..|..+..+++|++|++++|++++..|..+..    
T Consensus       246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----  321 (455)
T 3v47_A          246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG----  321 (455)
T ss_dssp             CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT----
T ss_pred             eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC----
Confidence            777654432          1112222  256777777777777777777777777777777777777555544432    


Q ss_pred             ccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEE
Q 044158          649 REEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLN  728 (892)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  728 (892)
                                                                      +++|+.|++++|.+++..|..++.+++|++|+
T Consensus       322 ------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          322 ------------------------------------------------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             ------------------------------------------------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             ------------------------------------------------cccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence                                                            22577777777777766677777777777777


Q ss_pred             ccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCc
Q 044158          729 LSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPE  788 (892)
Q Consensus       729 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~  788 (892)
                      |++|++++..|..|+.+++|++|++++|++++..+..+..+++|+.|++++|+++|.+|.
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            777777777777777777777777777777766555667777777777777777777774

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.3e-39  Score=364.92  Aligned_cols=358  Identities=20%  Similarity=0.216  Sum_probs=291.8

Q ss_pred             CCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEE
Q 044158          355 TNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLD  434 (892)
Q Consensus       355 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~  434 (892)
                      ++|++|++++|.+++..+..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+++..|..|+++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            66788888888887777777788888888888888887677666556688888888888888877788888888888888


Q ss_pred             CcCCcCccccchh-HhhcCccCcEEEccCCccccccccc-ccccCCCcEEeecCccCcCCCCcccccC--CCCcEEEccC
Q 044158          435 LSNNQLTGEIPEH-LAMGCFNLEYLLLSNNSLQGQLFSK-KINLTKLKRLNLDGNHFIGGIPESLSNC--SSLQGLYISD  510 (892)
Q Consensus       435 L~~n~l~~~i~~~-~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~l--~~L~~L~L~~  510 (892)
                      +++|++++.++.. .+..+++|++|++++|.+++..|.. +..+++|++|++++|++.+..+..+..+  .+|+.|++++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            8888887544432 3456888888888888888776765 7788888888888888888777777765  6788888888


Q ss_pred             CcCCCCccccc--------cCCCCCcEEECCCCcccCCCcccccCC---CCCcEEeCCCCccCCCcc---------cccc
Q 044158          511 NDISGSIPTWM--------GNISFLDAIIMPDNHLEGPIPSEFCQL---DYLEILDLSKNNIAGRPL---------NGAF  570 (892)
Q Consensus       511 n~l~~~~~~~~--------~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~---------~~~~  570 (892)
                      |.+.+..+..+        ..+++|+.|++++|++++..|..+...   ++|+.|++++|.+.+...         +..+
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  269 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF  269 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence            88876554433        356788888888888888777766543   788888888886554211         1122


Q ss_pred             c--CCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccc
Q 044158          571 S--KCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLH  648 (892)
Q Consensus       571 ~--~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~  648 (892)
                      .  ..++|++|++++|++++..|.+++.+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..    
T Consensus       270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----  345 (455)
T 3v47_A          270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN----  345 (455)
T ss_dssp             GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT----
T ss_pred             ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC----
Confidence            2  2368999999999999999999999999999999999999988999999999999999999998665555443    


Q ss_pred             ccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEE
Q 044158          649 REEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLN  728 (892)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  728 (892)
                                                                      +++|+.|++++|++++..|..+..+++|++|+
T Consensus       346 ------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  377 (455)
T 3v47_A          346 ------------------------------------------------LDKLEVLDLSYNHIRALGDQSFLGLPNLKELA  377 (455)
T ss_dssp             ------------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ------------------------------------------------cccCCEEECCCCcccccChhhccccccccEEE
Confidence                                                            34699999999999999999999999999999


Q ss_pred             ccCccCCccccccccCCCCCCEEECCCCcCcccCCc
Q 044158          729 LSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPP  764 (892)
Q Consensus       729 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~  764 (892)
                      |++|++++..+..++.+++|+.|++++|++++.+|.
T Consensus       378 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            999999988888889999999999999999998873

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.2e-39  Score=362.03  Aligned_cols=322  Identities=26%  Similarity=0.365  Sum_probs=190.7

Q ss_pred             CCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEE
Q 044158          355 TNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLD  434 (892)
Q Consensus       355 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~  434 (892)
                      ++|++|++++|.+++. +.   ..++|++|++++|+++ .++..    .++|++|++++|.+++ +| .|+++++|++|+
T Consensus        91 ~~L~~L~l~~n~l~~l-p~---~~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~  159 (454)
T 1jl5_A           91 PHLESLVASCNSLTEL-PE---LPQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID  159 (454)
T ss_dssp             TTCSEEECCSSCCSSC-CC---CCTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             CCCCEEEccCCcCCcc-cc---ccCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence            3455555555555542 11   1256666666666666 33321    2577777777777775 55 477777777777


Q ss_pred             CcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCC
Q 044158          435 LSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDIS  514 (892)
Q Consensus       435 L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  514 (892)
                      +++|+++ .+|..    ..+|++|++++|++++ +| .+..+++|+.|++++|++.+ +|...   ++|++|++++|+++
T Consensus       160 l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~  228 (454)
T 1jl5_A          160 VDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE  228 (454)
T ss_dssp             CCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS
T ss_pred             CCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC
Confidence            7777777 45542    3477777777777776 34 46777777777777777765 34322   47778888888777


Q ss_pred             CCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhh
Q 044158          515 GSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWM  594 (892)
Q Consensus       515 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~  594 (892)
                       .+| .++.+++|+.|++++|++++ +|..   .++|++|++++|+++++  |..   +++|++|++++|++++. |.. 
T Consensus       229 -~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l--~~~---~~~L~~L~ls~N~l~~l-~~~-  295 (454)
T 1jl5_A          229 -ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDL--PEL---PQSLTFLDVSENIFSGL-SEL-  295 (454)
T ss_dssp             -SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCC--CCC---CTTCCEEECCSSCCSEE-SCC-
T ss_pred             -ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccccc--Ccc---cCcCCEEECcCCccCcc-cCc-
Confidence             455 37777778888888777774 3432   36788888888887763  322   36788888888887752 211 


Q ss_pred             hcCCCCCEEecccccccccCCccccCC-CCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCC
Q 044158          595 GRLSQLRYLILANNNFEGEVPLRLCQL-QKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGP  673 (892)
Q Consensus       595 ~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  673 (892)
                        .++|++|++++|++++ ++    .+ ++|++|++++|++++ +|..+                               
T Consensus       296 --~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~~-------------------------------  336 (454)
T 1jl5_A          296 --PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPALP-------------------------------  336 (454)
T ss_dssp             --CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCCC-------------------------------
T ss_pred             --CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-ccccC-------------------------------
Confidence              1578888888888774 22    22 478888888888774 44321                               


Q ss_pred             CCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCc--cccccccCCCCCCEE
Q 044158          674 SMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTG--TIPVTFSNLRQVESL  751 (892)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L  751 (892)
                                              ++|+.|++++|+++ .+|.   .+++|++|++++|++++  .+|.+++.       
T Consensus       337 ------------------------~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~-------  381 (454)
T 1jl5_A          337 ------------------------PRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED-------  381 (454)
T ss_dssp             ------------------------TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE-------
T ss_pred             ------------------------CcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh-------
Confidence                                    24777888888887 4665   46778888888888887  66665543       


Q ss_pred             ECCCCcCcccCCccccCCCCCCEEEccCCcccc--cCCcc
Q 044158          752 DLSYNNLTGKIPPRLVELNALAVFTVAHNNLSG--KIPER  789 (892)
Q Consensus       752 dLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g--~ip~~  789 (892)
                       ++.|.+.|.+|..   +++|++||+++|+++|  .+|..
T Consensus       382 -L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s  417 (454)
T 1jl5_A          382 -LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES  417 (454)
T ss_dssp             -EECCC----------------------------------
T ss_pred             -hhhcccccccccc---cCcCCEEECCCCcCCccccchhh
Confidence             2346677777763   4678888888888887  67753

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.3e-37  Score=344.70  Aligned_cols=384  Identities=23%  Similarity=0.269  Sum_probs=227.0

Q ss_pred             ceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCC-------------CCEEEccCCcCcCCC
Q 044158          305 QLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTN-------------LRSIILANNSLSGPF  371 (892)
Q Consensus       305 ~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~-------------L~~L~L~~n~l~~~~  371 (892)
                      .++.+.++++.+   +.+|+.++.+++|++|++++|.+.|.+|.. ++++++             +++|++++|.+++..
T Consensus        12 ~L~~L~l~~n~l---~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp   87 (454)
T 1jl5_A           12 FLQEPLRHSSNL---TEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred             cchhhhcccCch---hhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence            455555555553   457777788888888888888888888776 444443             477888887777643


Q ss_pred             CCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhc
Q 044158          372 RLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMG  451 (892)
Q Consensus       372 ~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~  451 (892)
                      .    ..++|++|++++|.+++ +|..    +++|++|++++|++++ +|..   .++|++|++++|+++ .+|.  +..
T Consensus        88 ~----~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp~--~~~  151 (454)
T 1jl5_A           88 E----LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLPE--LQN  151 (454)
T ss_dssp             S----CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCCC--CTT
T ss_pred             C----CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCcc--cCC
Confidence            2    23677788888777774 6532    4677788887777764 2221   157777888877777 4663  456


Q ss_pred             CccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEE
Q 044158          452 CFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAII  531 (892)
Q Consensus       452 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  531 (892)
                      +++|++|++++|++++ +|..   .++|++|++++|++.+ +| .+.++++|++|++++|++++ +|..   .++|+.|+
T Consensus       152 l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~  221 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIV  221 (454)
T ss_dssp             CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred             CCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEE
Confidence            7777888887777775 3332   2477777777777775 45 47777777777777777775 3332   24777777


Q ss_pred             CCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccccccc
Q 044158          532 MPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE  611 (892)
Q Consensus       532 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  611 (892)
                      +++|.++ .+| .++.+++|++|++++|+++++  |.   .+++|++|++++|++++ +|..   .++|++|++++|+++
T Consensus       222 l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l--~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~  290 (454)
T 1jl5_A          222 AGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL--PD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFS  290 (454)
T ss_dssp             CCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC--CS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred             CcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc--cc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccC
Confidence            7777777 455 377777777777777777753  22   23677777777777775 4443   367777777777777


Q ss_pred             ccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccc
Q 044158          612 GEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYT  691 (892)
Q Consensus       612 ~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (892)
                      +. |..   .++|++|++++|++++ ++.                                                   
T Consensus       291 ~l-~~~---~~~L~~L~l~~N~l~~-i~~---------------------------------------------------  314 (454)
T 1jl5_A          291 GL-SEL---PPNLYYLNASSNEIRS-LCD---------------------------------------------------  314 (454)
T ss_dssp             EE-SCC---CTTCCEEECCSSCCSE-ECC---------------------------------------------------
T ss_pred             cc-cCc---CCcCCEEECcCCcCCc-ccC---------------------------------------------------
Confidence            52 211   2567777777777763 110                                                   


Q ss_pred             cCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcc--cCCccccCC
Q 044158          692 YKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG--KIPPRLVEL  769 (892)
Q Consensus       692 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g--~ip~~l~~l  769 (892)
                          ..++|+.|++++|++++ +|..   +++|++|++++|+++ .+|.   .+++|+.||+++|++++  .+|..+.. 
T Consensus       315 ----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~-  381 (454)
T 1jl5_A          315 ----LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED-  381 (454)
T ss_dssp             ----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE-
T ss_pred             ----CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh-
Confidence                01257778888888885 5654   467888888888888 4555   46788888888888887  66765432 


Q ss_pred             CCCCEEEccCCcccccCCccccccCCCCcccccCCCCCC
Q 044158          770 NALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLC  808 (892)
Q Consensus       770 ~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc  808 (892)
                             ++.|++.|.+|..   +..+...++++|+...
T Consensus       382 -------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          382 -------LRMNSHLAEVPEL---PQNLKQLHVETNPLRE  410 (454)
T ss_dssp             -------EECCC---------------------------
T ss_pred             -------hhhcccccccccc---cCcCCEEECCCCcCCc
Confidence                   3457777877763   3566677788887654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.3e-35  Score=336.44  Aligned_cols=347  Identities=24%  Similarity=0.354  Sum_probs=288.5

Q ss_pred             cCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcE
Q 044158          353 NNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIY  432 (892)
Q Consensus       353 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~  432 (892)
                      .++++++|++.++.+....  .+..+++|++|++++|.++ .++. + ..+++|++|++++|.+.+..+  ++++++|++
T Consensus        44 ~l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLT-DITP-L-KNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             HhccccEEecCCCCCccCc--chhhhcCCCEEECCCCccC-Cchh-h-hccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            4567888888888887532  3677889999999999888 4444 3 448999999999999986554  889999999


Q ss_pred             EECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCc
Q 044158          433 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDND  512 (892)
Q Consensus       433 L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~  512 (892)
                      |++++|.++ .++.  +..+++|++|++++|.+.+.  ..+..+++|+.|+++ |.+.+..  .+.++++|++|++++|.
T Consensus       117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK  188 (466)
T ss_dssp             EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             EECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCc
Confidence            999999988 5554  46789999999999998864  247889999999996 4555432  38889999999999999


Q ss_pred             CCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCCh
Q 044158          513 ISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPN  592 (892)
Q Consensus       513 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~  592 (892)
                      +++.  ..+..+++|+.|++++|.+++..|  ++.+++|++|++++|+++++   +.+..+++|++|++++|.+++..| 
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~-  260 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAP-  260 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc---hhhhcCCCCCEEECCCCccccchh-
Confidence            8864  348889999999999999987655  77789999999999999874   368889999999999999987655 


Q ss_pred             hhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCC
Q 044158          593 WMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVG  672 (892)
Q Consensus       593 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  672 (892)
                       +..+++|++|++++|++++..+  +..+++|+.|++++|++++..|  +.                             
T Consensus       261 -~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~-----------------------------  306 (466)
T 1o6v_A          261 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS-----------------------------  306 (466)
T ss_dssp             -GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG-----------------------------
T ss_pred             -hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc-----------------------------
Confidence             8889999999999999986544  8889999999999999885322  11                             


Q ss_pred             CCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEE
Q 044158          673 PSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLD  752 (892)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~Ld  752 (892)
                                             .+++|+.|++++|++++..|  ++.+++|+.|++++|.+++.  ..++++++|+.|+
T Consensus       307 -----------------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  359 (466)
T 1o6v_A          307 -----------------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLS  359 (466)
T ss_dssp             -----------------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred             -----------------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence                                   23469999999999998766  78999999999999999976  4789999999999


Q ss_pred             CCCCcCcccCCccccCCCCCCEEEccCCccccc
Q 044158          753 LSYNNLTGKIPPRLVELNALAVFTVAHNNLSGK  785 (892)
Q Consensus       753 Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~  785 (892)
                      +++|++++.+|  +..+++|+.|++++|++++.
T Consensus       360 l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          360 AGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            99999998887  88999999999999999974

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.4e-36  Score=344.16  Aligned_cols=346  Identities=21%  Similarity=0.236  Sum_probs=195.7

Q ss_pred             cEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEcc
Q 044158          382 IALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS  461 (892)
Q Consensus       382 ~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~  461 (892)
                      +.++.+++.++ .+|..+   .++++.|++++|++++..+..|.++++|++|+|++|.+++ ++...+.++++|++|+++
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~   88 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLR   88 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE-eChhhhhCCccCCEEECC
Confidence            46667777666 666544   3567777777777776666666666777777776666663 322233455555555555


Q ss_pred             CCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCC
Q 044158          462 NNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPI  541 (892)
Q Consensus       462 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~  541 (892)
                      +|++++..+..|.++++|++|++++|++.+..+..|..+++|++|++++|.+++.                        .
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~  144 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI------------------------S  144 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE------------------------C
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee------------------------C
Confidence            5555554444455555555555555555544444555555555555555555444                        4


Q ss_pred             cccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCC
Q 044158          542 PSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQL  621 (892)
Q Consensus       542 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  621 (892)
                      +..|..+++|++|++++|+++++ .+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|......
T Consensus       145 ~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  223 (477)
T 2id5_A          145 HRAFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG  223 (477)
T ss_dssp             TTSSTTCTTCCEEEEESCCCSSC-CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred             hhhccCCCCCCEEECCCCcCccc-ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC
Confidence            44444555555555555555442 13344555555555555555554444455555555555555555554555444444


Q ss_pred             CCCCEEEcCCCcCCCCCCc-cccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCcc
Q 044158          622 QKLRLLDLSHNNFSGQIPP-CLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESI  700 (892)
Q Consensus       622 ~~L~~L~Ls~N~l~g~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  700 (892)
                      .+|+.|++++|+++ .+|. .+.                                                    .+++|
T Consensus       224 ~~L~~L~l~~n~l~-~~~~~~~~----------------------------------------------------~l~~L  250 (477)
T 2id5_A          224 LNLTSLSITHCNLT-AVPYLAVR----------------------------------------------------HLVYL  250 (477)
T ss_dssp             CCCSEEEEESSCCC-SCCHHHHT----------------------------------------------------TCTTC
T ss_pred             ccccEEECcCCccc-ccCHHHhc----------------------------------------------------Ccccc
Confidence            55666666666555 2221 111                                                    12245


Q ss_pred             ceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCC
Q 044158          701 HGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHN  780 (892)
Q Consensus       701 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N  780 (892)
                      +.|++++|.+++..+..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++|
T Consensus       251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred             CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence            56666666666555556666677777777777777666667777777777777777777665566666677777777777


Q ss_pred             cccccCCccccccCCCCcccccCCCCCCCCC
Q 044158          781 NLSGKIPERIAQFATFDEDSYEGNPFLCGPP  811 (892)
Q Consensus       781 ~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~  811 (892)
                      ++++..+. ...+.......+.++...|..|
T Consensus       331 ~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          331 PLACDCRL-LWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             CEECSGGG-HHHHTTTTSSCCTTCCCBEEES
T ss_pred             CccCccch-HhHHhhhhccccCccCceeCCc
Confidence            77665442 1112222334455666666543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.3e-36  Score=336.12  Aligned_cols=358  Identities=19%  Similarity=0.140  Sum_probs=240.3

Q ss_pred             ccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcC
Q 044158          324 KFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVL  403 (892)
Q Consensus       324 ~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l  403 (892)
                      ..+..+++|++|++++|.+.+. |.  ++.+++|++|++++|.+++.   ++..+++|++|++++|.+++ ++  + ..+
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~-~~--l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~--~-~~l  105 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDM-TG--IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD--V-TPL  105 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCC-TT--GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--C-TTC
T ss_pred             cChhHcCCCCEEEccCCCcccC-hh--hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee--c-CCC
Confidence            3455566777777777766653 42  56667777777777776653   25666667777777776663 33  2 236


Q ss_pred             CCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEe
Q 044158          404 PNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLN  483 (892)
Q Consensus       404 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  483 (892)
                      ++|++|++++|++++. |  ++.+++|++|++++|++++ ++   +..+++|++|++++|...+.+  .+..+++|+.|+
T Consensus       106 ~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~  176 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD  176 (457)
T ss_dssp             TTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred             CcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence            6677777777766653 3  6666667777777766663 33   245666666666666444433  355666666666


Q ss_pred             ecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCC
Q 044158          484 LDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG  563 (892)
Q Consensus       484 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  563 (892)
                      +++|++++ +|  +..+++|++|++++|++++.   .++.+++|+.|++++|++++ +|  +..+++|++|++++|++++
T Consensus       177 ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          177 CSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred             CCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence            66666665 23  55666666666666666654   25566666666666666665 33  5566666666666666665


Q ss_pred             CcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCcccc
Q 044158          564 RPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLD  643 (892)
Q Consensus       564 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~  643 (892)
                      .+    +..+++|+.|++++|              +|+.|++++|++.+.+|  ++.+++|+.|++++|+..|.+|....
T Consensus       248 ~~----~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~  307 (457)
T 3bz5_A          248 LD----VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAA  307 (457)
T ss_dssp             CC----CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTC
T ss_pred             cC----HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCC
Confidence            32    334556666665554              46778888888887776  46789999999999998888875433


Q ss_pred             CCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCC
Q 044158          644 NTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIR  723 (892)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  723 (892)
                      .+...                                            .....++|+.|++++|++++. |  ++.+++
T Consensus       308 ~L~~L--------------------------------------------~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~  340 (457)
T 3bz5_A          308 GITEL--------------------------------------------DLSQNPKLVYLYLNNTELTEL-D--VSHNTK  340 (457)
T ss_dssp             CCSCC--------------------------------------------CCTTCTTCCEEECTTCCCSCC-C--CTTCTT
T ss_pred             cceEe--------------------------------------------chhhcccCCEEECCCCccccc-c--cccCCc
Confidence            22200                                            001235789999999999984 3  899999


Q ss_pred             CCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCcc
Q 044158          724 IHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPER  789 (892)
Q Consensus       724 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~  789 (892)
                      |+.|++++|++++        ++.|+.|++++|+++|.     ..+..|..+++++|+++|.||..
T Consensus       341 L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          341 LKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             CSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             CcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            9999999999986        24677788999999987     24456888999999999999974

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.5e-36  Score=341.89  Aligned_cols=325  Identities=19%  Similarity=0.197  Sum_probs=284.7

Q ss_pred             cEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccC
Q 044158          431 IYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISD  510 (892)
Q Consensus       431 ~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~  510 (892)
                      +.++.++++++ .+|..+   .++++.|++++|++++..+..|..+++|++|+|++|.+.+..|..|.++++|++|+|++
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            45666666666 666644   35778888888888887778888888999999999988887788899999999999999


Q ss_pred             CcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccC
Q 044158          511 NDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNI  590 (892)
Q Consensus       511 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  590 (892)
                      |++++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++ ..+..|.++++|++|++++|++++..
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-ECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce-eChhhccCCCCCCEEECCCCcCcccC
Confidence            99987777778899999999999999998888899999999999999999987 44678999999999999999999777


Q ss_pred             ChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccccccccccccccccccccccccc
Q 044158          591 PNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYN  670 (892)
Q Consensus       591 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  670 (892)
                      +..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+.+|.....                          
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--------------------------  222 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY--------------------------  222 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT--------------------------
T ss_pred             hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc--------------------------
Confidence            778999999999999999999888889999999999999999987766653321                          


Q ss_pred             CCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCE
Q 044158          671 VGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVES  750 (892)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  750 (892)
                                                ..+|+.|++++|++++..+..+..+++|+.|+|++|.+++..+..|.++++|+.
T Consensus       223 --------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  276 (477)
T 2id5_A          223 --------------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE  276 (477)
T ss_dssp             --------------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCE
T ss_pred             --------------------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCE
Confidence                                      125899999999999655567999999999999999999988899999999999


Q ss_pred             EECCCCcCcccCCccccCCCCCCEEEccCCcccccCCccccccCCCCcccccCCCCCCCCCC
Q 044158          751 LDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPL  812 (892)
Q Consensus       751 LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~l  812 (892)
                      |+|++|++++..|..+..+++|+.|++++|++++..+..+..+..+....+.+||+.|+|.+
T Consensus       277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~  338 (477)
T 2id5_A          277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL  338 (477)
T ss_dssp             EECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred             EECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence            99999999999999999999999999999999987777667778888999999999998753

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.6e-34  Score=327.28  Aligned_cols=349  Identities=26%  Similarity=0.369  Sum_probs=287.2

Q ss_pred             CCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcE
Q 044158          329 QHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGF  408 (892)
Q Consensus       329 ~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~  408 (892)
                      +++++.|++.++.+.. +|.  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++. + ..+++|++
T Consensus        45 l~~l~~L~l~~~~i~~-l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~-~~l~~L~~  116 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS-IDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP-L-ANLTNLTG  116 (466)
T ss_dssp             HHTCCEEECCSSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-G-TTCTTCCE
T ss_pred             hccccEEecCCCCCcc-Ccc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh-h-cCCCCCCE
Confidence            4567777777776653 554  5678899999999998887654  7888999999999999884 443 3 44899999


Q ss_pred             EECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCcc
Q 044158          409 LTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNH  488 (892)
Q Consensus       409 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  488 (892)
                      |++++|.+++..+  +..+++|++|++++|.+. .++.  +..+++|++|+++ |.+.+..  .+..+++|+.|++++|.
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK  188 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCc
Confidence            9999999886543  889999999999999988 5554  4678999999996 4555433  37889999999999999


Q ss_pred             CcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccc
Q 044158          489 FIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNG  568 (892)
Q Consensus       489 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  568 (892)
                      +.+.  ..+..+++|++|++++|++.+..|  ++.+++|+.|++++|.+++.  ..+..+++|++|++++|.+++..   
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~---  259 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA---  259 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG---
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch---
Confidence            8754  358889999999999999987765  77889999999999999864  46888999999999999998743   


Q ss_pred             cccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccc
Q 044158          569 AFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLH  648 (892)
Q Consensus       569 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~  648 (892)
                      .+..+++|++|++++|++++..+  +..+++|+.|++++|++++..+  +..+++|+.|++++|++++..|  +.     
T Consensus       260 ~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~-----  328 (466)
T 1o6v_A          260 PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS-----  328 (466)
T ss_dssp             GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GG-----
T ss_pred             hhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hc-----
Confidence            38899999999999999986544  8889999999999999986544  7899999999999999986543  21     


Q ss_pred             ccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEE
Q 044158          649 REEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLN  728 (892)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  728 (892)
                                                                     .+++|+.|++++|.+++.  ..+..+++|+.|+
T Consensus       329 -----------------------------------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  359 (466)
T 1o6v_A          329 -----------------------------------------------SLTKLQRLFFYNNKVSDV--SSLANLTNINWLS  359 (466)
T ss_dssp             -----------------------------------------------GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred             -----------------------------------------------cCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence                                                           234699999999999975  4789999999999


Q ss_pred             ccCccCCccccccccCCCCCCEEECCCCcCcccCCcc
Q 044158          729 LSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPR  765 (892)
Q Consensus       729 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~  765 (892)
                      +++|++++.+|  +..+++|+.|++++|++++ +|..
T Consensus       360 l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~~  393 (466)
T 1o6v_A          360 AGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVN  393 (466)
T ss_dssp             CCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCBC
T ss_pred             CCCCccCccch--hhcCCCCCEEeccCCcccC-Cchh
Confidence            99999999888  8999999999999999996 3443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=7.6e-35  Score=326.76  Aligned_cols=317  Identities=21%  Similarity=0.194  Sum_probs=179.2

Q ss_pred             cccCCCCCcEEEccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCC
Q 044158          198 GLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYS  277 (892)
Q Consensus       198 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  277 (892)
                      .++.+++|++|++++|.+++. | .++.+++|++|++++|++++ +   .++.+++|++|++++|.+++.          
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~---~~~~l~~L~~L~Ls~N~l~~~----------  100 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-L---DLSQNTNLTYLACDSNKLTNL----------  100 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-C---CCTTCTTCSEEECCSSCCSCC----------
T ss_pred             ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-E---ccccCCCCCEEECcCCCCcee----------
Confidence            455566666666666666653 3 46666666666666666654 2   255556666666665554421          


Q ss_pred             CccEEEccCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCC
Q 044158          278 KLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNL  357 (892)
Q Consensus       278 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L  357 (892)
                                                                   +  +..+++|++|++++|.+.+ +|   ++.+++|
T Consensus       101 ---------------------------------------------~--~~~l~~L~~L~L~~N~l~~-l~---~~~l~~L  129 (457)
T 3bz5_A          101 ---------------------------------------------D--VTPLTKLTYLNCDTNKLTK-LD---VSQNPLL  129 (457)
T ss_dssp             ---------------------------------------------C--CTTCTTCCEEECCSSCCSC-CC---CTTCTTC
T ss_pred             ---------------------------------------------e--cCCCCcCCEEECCCCcCCe-ec---CCCCCcC
Confidence                                                         1  2234455566666665554 33   4556666


Q ss_pred             CEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcC
Q 044158          358 RSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSN  437 (892)
Q Consensus       358 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~  437 (892)
                      ++|++++|.+++.   .+..+++|++|++++|...+.++  + ..+++|++|++++|++++ +|  +..+++|+.|++++
T Consensus       130 ~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~--~-~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~  200 (457)
T 3bz5_A          130 TYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--V-TPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDT  200 (457)
T ss_dssp             CEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC--C-TTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCS
T ss_pred             CEEECCCCcccee---ccccCCcCCEEECCCCCcccccc--c-ccCCcCCEEECCCCccce-ec--cccCCCCCEEECcC
Confidence            6666666666652   35556666666666664443442  2 225566666666666654 23  55556666666666


Q ss_pred             CcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCc
Q 044158          438 NQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSI  517 (892)
Q Consensus       438 n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  517 (892)
                      |++++ ++   +..+++|++|++++|++++ +|  +..+++|+.|++++|++++..   +..+++|+.|++++|      
T Consensus       201 N~l~~-~~---l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n------  264 (457)
T 3bz5_A          201 NNITK-LD---LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT------  264 (457)
T ss_dssp             SCCSC-CC---CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC------
T ss_pred             CcCCe-ec---cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC------
Confidence            66552 22   2345556666666666555 22  455555666666666555432   234455555555443      


Q ss_pred             cccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcC
Q 044158          518 PTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRL  597 (892)
Q Consensus       518 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l  597 (892)
                              +|+.|++++|.+.+.+|  ++.+++|+.|++++|...+ .+|.   ..++|+.|++++|             
T Consensus       265 --------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~-~l~~---~~~~L~~L~l~~~-------------  317 (457)
T 3bz5_A          265 --------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY-LLDC---QAAGITELDLSQN-------------  317 (457)
T ss_dssp             --------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC-EEEC---TTCCCSCCCCTTC-------------
T ss_pred             --------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccc-eecc---CCCcceEechhhc-------------
Confidence                    23445566666555554  3455666666666666554 3332   2344444444433             


Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCC
Q 044158          598 SQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSG  636 (892)
Q Consensus       598 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g  636 (892)
                      ++|++|++++|++++. +  +..+++|+.|++++|+++|
T Consensus       318 ~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          318 PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred             ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence            5777778888877763 2  6777778888888777764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.5e-34  Score=318.17  Aligned_cols=335  Identities=20%  Similarity=0.216  Sum_probs=214.5

Q ss_pred             CCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcE
Q 044158          378 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY  457 (892)
Q Consensus       378 ~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~  457 (892)
                      +++++.|++++|.++ .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.++ .++...+.++++|++
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence            456777777777766 677766666788888888888887766667777888888888888777 444444456777777


Q ss_pred             EEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcc
Q 044158          458 LLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHL  537 (892)
Q Consensus       458 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  537 (892)
                      |++++|+++...+..|..+++|++|++++|++.+..+..+..+++|++|++++|++++.   .+..+++|+.|++++|.+
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            77777777755555556677777777777777666666666777777777777766643   234455566666666655


Q ss_pred             cCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCcc
Q 044158          538 EGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLR  617 (892)
Q Consensus       538 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  617 (892)
                      ++     +...++|++|++++|.++.++  .  ...++|+.|++++|++++.  .++..+++|++|++++|++++..|..
T Consensus       199 ~~-----~~~~~~L~~L~l~~n~l~~~~--~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~  267 (390)
T 3o6n_A          199 ST-----LAIPIAVEELDASHNSINVVR--G--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP  267 (390)
T ss_dssp             SE-----EECCSSCSEEECCSSCCCEEE--C--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             cc-----cCCCCcceEEECCCCeeeecc--c--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence            42     222345566666666555421  1  1234555555555555532  34555555555555555555544555


Q ss_pred             ccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCc
Q 044158          618 LCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPL  697 (892)
Q Consensus       618 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  697 (892)
                      +..+++|++|++++|+                                                                
T Consensus       268 ~~~l~~L~~L~L~~n~----------------------------------------------------------------  283 (390)
T 3o6n_A          268 FVKMQRLERLYISNNR----------------------------------------------------------------  283 (390)
T ss_dssp             GTTCSSCCEEECCSSC----------------------------------------------------------------
T ss_pred             ccccccCCEEECCCCc----------------------------------------------------------------
Confidence            5555555555555554                                                                


Q ss_pred             CccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEc
Q 044158          698 ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTV  777 (892)
Q Consensus       698 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~l  777 (892)
                                  +++ +|..+..+++|++|+|++|+++ .+|..++.+++|+.|++++|++++. |  +..+++|+.|++
T Consensus       284 ------------l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l  346 (390)
T 3o6n_A          284 ------------LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL  346 (390)
T ss_dssp             ------------CCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred             ------------Ccc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEc
Confidence                        442 3444556677777777777777 4566677778888888888888743 3  567778888888


Q ss_pred             cCCcccccCCccccccCCCCcccccCCCCCCCCC
Q 044158          778 AHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPP  811 (892)
Q Consensus       778 s~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~  811 (892)
                      ++|++++....  ..+..+....+.+++..|.++
T Consensus       347 ~~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          347 SHNDWDCNSLR--ALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             CSSCEEHHHHH--HHTTTCCTTTBCCCCSCCCTT
T ss_pred             CCCCccchhHH--HHHHHHHhhcccccCceeccc
Confidence            88888875332  445566666778888888754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.2e-35  Score=315.02  Aligned_cols=258  Identities=29%  Similarity=0.536  Sum_probs=209.5

Q ss_pred             CCcEEEccCCcCCC--CccccccCCCCCcEEECCC-CcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccE
Q 044158          502 SLQGLYISDNDISG--SIPTWMGNISFLDAIIMPD-NHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLT  578 (892)
Q Consensus       502 ~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~  578 (892)
                      +++.|++++|.+++  .+|..+..++.|++|++++ |.+.+.+|..|.++++|++|++++|++++ .+|..+..+++|++
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCCE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-cCCHHHhCCCCCCE
Confidence            45555555555555  5555556666666666663 66666666667777777777777777765 55667777788888


Q ss_pred             EEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCC-CCCEEEcCCCcCCCCCCccccCCcccccccccccc
Q 044158          579 LDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQ-KLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLI  657 (892)
Q Consensus       579 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~  657 (892)
                      |++++|++++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|+++|.+|..+...            
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l------------  197 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL------------  197 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC------------
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC------------
Confidence            88888888777888888888888888888888888888888887 88888888888887777665432            


Q ss_pred             cccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCcc
Q 044158          658 PTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGT  737 (892)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  737 (892)
                                                               .|+.|++++|.+++.+|..++.+++|+.|+|++|++++.
T Consensus       198 -----------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  236 (313)
T 1ogq_A          198 -----------------------------------------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             -----------------------------------------CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             -----------------------------------------cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence                                                     177899999999988999999999999999999999988


Q ss_pred             ccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCccccccCCCCcccccCCCCCCCCCCCCCC
Q 044158          738 IPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKIC  816 (892)
Q Consensus       738 ~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~l~~~c  816 (892)
                      +|. +..+++|++|||++|+++|.+|..+..+++|++|++++|+++|.+|. ..++..+...++.|||++||.|+. .|
T Consensus       237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-CccccccChHHhcCCCCccCCCCC-CC
Confidence            776 88999999999999999999999999999999999999999999999 488899999999999999998865 46

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=6.6e-34  Score=332.20  Aligned_cols=335  Identities=20%  Similarity=0.218  Sum_probs=209.9

Q ss_pred             CCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcE
Q 044158          378 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY  457 (892)
Q Consensus       378 ~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~  457 (892)
                      +.+++.+++++|.+. .+|..++..+++|++|++++|.+.+..|..|+.+++|++|+|++|.++ .+|...+.++++|++
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence            345667777777666 566666666777777777777777766667777777777777777776 444444456666777


Q ss_pred             EEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcc
Q 044158          458 LLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHL  537 (892)
Q Consensus       458 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  537 (892)
                      |++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..   +..+++|+.|++++|.+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence            777777666555555566666666666666666665666666666666666666665432   33344555555555554


Q ss_pred             cCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCcc
Q 044158          538 EGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLR  617 (892)
Q Consensus       538 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  617 (892)
                      ++     +...++|+.|++++|.++.++  ..+  .++|+.|++++|.+++  +.++..+++|+.|+|++|.+++..|..
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~~~~--~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~  273 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSINVVR--GPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP  273 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCCEEE--CSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             cc-----ccCCchhheeeccCCcccccc--ccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH
Confidence            42     222334555555555554321  111  1344455555554443  234444444444444444444444444


Q ss_pred             ccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCc
Q 044158          618 LCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPL  697 (892)
Q Consensus       618 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  697 (892)
                      +..+++                                                                          
T Consensus       274 ~~~l~~--------------------------------------------------------------------------  279 (597)
T 3oja_B          274 FVKMQR--------------------------------------------------------------------------  279 (597)
T ss_dssp             GTTCSS--------------------------------------------------------------------------
T ss_pred             hcCccC--------------------------------------------------------------------------
Confidence            444444                                                                          


Q ss_pred             CccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEc
Q 044158          698 ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTV  777 (892)
Q Consensus       698 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~l  777 (892)
                        |+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++. |  +..++.|+.|++
T Consensus       280 --L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l  352 (597)
T 3oja_B          280 --LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL  352 (597)
T ss_dssp             --CCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred             --CCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEe
Confidence              4555555555553 4555566777888888888888 5677778888888888888888854 3  567788999999


Q ss_pred             cCCcccccCCccccccCCCCcccccCCCCCCCCC
Q 044158          778 AHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPP  811 (892)
Q Consensus       778 s~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~  811 (892)
                      ++|+++|..+.  ..+..+....+.+++..|+.+
T Consensus       353 ~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          353 SHNDWDCNSLR--ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             CSSCEEHHHHH--HHTTTCCTTTBCCCCCCCCTT
T ss_pred             eCCCCCChhHH--HHHHHHhhhccccccccCCcc
Confidence            99999886543  456677777788999999864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.6e-33  Score=306.84  Aligned_cols=312  Identities=20%  Similarity=0.212  Sum_probs=247.7

Q ss_pred             CCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEE
Q 044158          427 MNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGL  506 (892)
Q Consensus       427 l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  506 (892)
                      +++++.|++++|.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|++.+..|..|.++++|++|
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            456677777777766 6666666667777777777777776666677777888888888888777777777888888888


Q ss_pred             EccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCcc
Q 044158          507 YISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRL  586 (892)
Q Consensus       507 ~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l  586 (892)
                      ++++|+++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++.    .+..+++|+.|++++|.+
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----CGGGCTTCSEEECCSSCC
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----ccccccccceeecccccc
Confidence            8888888765555567788888888888888877777788888888888888888763    255678888888888887


Q ss_pred             CccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccccccccccccccccccccc
Q 044158          587 NGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDI  666 (892)
Q Consensus       587 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (892)
                      ++.     ...++|+.|++++|++... |..  ..++|+.|++++|++++.  ..+.                       
T Consensus       199 ~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~-----------------------  245 (390)
T 3o6n_A          199 STL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLL-----------------------  245 (390)
T ss_dssp             SEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGG-----------------------
T ss_pred             ccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHc-----------------------
Confidence            743     2346889999999988854 432  357899999999998742  1221                       


Q ss_pred             ccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCC
Q 044158          667 VSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLR  746 (892)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  746 (892)
                                                   .+++|+.|++++|.+++..|..+..+++|+.|+|++|++++ +|..+..++
T Consensus       246 -----------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~  295 (390)
T 3o6n_A          246 -----------------------------NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP  295 (390)
T ss_dssp             -----------------------------GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCT
T ss_pred             -----------------------------CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCC
Confidence                                         23468999999999999899999999999999999999995 577778999


Q ss_pred             CCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCccccccCCCCcccccCCCCCCCC
Q 044158          747 QVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGP  810 (892)
Q Consensus       747 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~  810 (892)
                      +|+.|++++|+++ .+|..+..+++|+.|++++|++++. |  ...+..+...++.+||+-|.+
T Consensus       296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchh
Confidence            9999999999999 6788889999999999999999865 3  456778888999999999865

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=5.6e-32  Score=294.57  Aligned_cols=304  Identities=22%  Similarity=0.327  Sum_probs=189.2

Q ss_pred             CCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEE
Q 044158          403 LPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRL  482 (892)
Q Consensus       403 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  482 (892)
                      +++|++|++++|.+.. ++ .+..+++|++|++++|+++ .++.  +..+++|++|++++|.++..  +.+..+++|++|
T Consensus        43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            3444444444444432 22 2444445555555555444 3333  23445555555555544432  234555555555


Q ss_pred             eecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccC
Q 044158          483 NLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIA  562 (892)
Q Consensus       483 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  562 (892)
                      ++++|.+.+. +. +..+++|++|++++|.....++ .+..+++|+.|++++|.+.+..+  +..+++|++|++++|.++
T Consensus       116 ~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          116 YLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             ECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred             ECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence            5555555533 22 5555666666666664443332 25566666666666666654332  666677777777777776


Q ss_pred             CCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccc
Q 044158          563 GRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCL  642 (892)
Q Consensus       563 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~  642 (892)
                      +++   .+..+++|+.|++++|.+.+..+  +..+++|++|++++|++++..+  +..+++|++|++++|++++ ++ .+
T Consensus       191 ~~~---~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~  261 (347)
T 4fmz_A          191 DIS---PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-IN-AV  261 (347)
T ss_dssp             CCG---GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GG
T ss_pred             ccc---cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-Ch-hH
Confidence            532   26667777777777777765433  6677777777777777774333  6777778888888777763 11 11


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccC
Q 044158          643 DNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELI  722 (892)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  722 (892)
                      .                                                    .+++|+.|++++|.+++.  +.+..++
T Consensus       262 ~----------------------------------------------------~l~~L~~L~l~~n~l~~~--~~~~~l~  287 (347)
T 4fmz_A          262 K----------------------------------------------------DLTKLKMLNVGSNQISDI--SVLNNLS  287 (347)
T ss_dssp             T----------------------------------------------------TCTTCCEEECCSSCCCCC--GGGGGCT
T ss_pred             h----------------------------------------------------cCCCcCEEEccCCccCCC--hhhcCCC
Confidence            1                                                    234577788888888754  3578888


Q ss_pred             CCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCccc
Q 044158          723 RIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS  783 (892)
Q Consensus       723 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~  783 (892)
                      +|+.|++++|++++..|..++.+++|+.|++++|++++..|  +..+++|+.||+++|+++
T Consensus       288 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            89999999999888888888888999999999999887666  778888999999988875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=9.2e-33  Score=322.52  Aligned_cols=312  Identities=20%  Similarity=0.216  Sum_probs=249.1

Q ss_pred             CCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEE
Q 044158          427 MNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGL  506 (892)
Q Consensus       427 l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  506 (892)
                      +++++.+++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|+.|+|++|.+.+..|..|+++++|++|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            446667777777666 6666666667777777777777777767777778888888888888877777777888888888


Q ss_pred             EccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCcc
Q 044158          507 YISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRL  586 (892)
Q Consensus       507 ~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l  586 (892)
                      ++++|.+++..+..|+.+++|+.|++++|.+++..|..|..+++|++|++++|.+++.+    +..+++|+.|++++|.+
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSSCC
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhhhhcccCcc
Confidence            88888888666666778888888888888888777778888888888888888887632    45678888888888887


Q ss_pred             CccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccccccccccccccccccccc
Q 044158          587 NGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDI  666 (892)
Q Consensus       587 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (892)
                      ++.     ...++|+.|++++|.+....+ .+  .++|+.|+|++|.+++.  ..+.                       
T Consensus       205 ~~l-----~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~~--~~l~-----------------------  251 (597)
T 3oja_B          205 STL-----AIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTDT--AWLL-----------------------  251 (597)
T ss_dssp             SEE-----ECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCCC--GGGG-----------------------
T ss_pred             ccc-----cCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCCC--hhhc-----------------------
Confidence            743     334678899999998875433 22  36899999999998852  2222                       


Q ss_pred             ccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCC
Q 044158          667 VSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLR  746 (892)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  746 (892)
                                                   .++.|+.|++++|.+++.+|..|+.+++|+.|+|++|++++ +|..++.++
T Consensus       252 -----------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~  301 (597)
T 3oja_B          252 -----------------------------NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP  301 (597)
T ss_dssp             -----------------------------GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCT
T ss_pred             -----------------------------cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCC
Confidence                                         23468999999999999999999999999999999999996 677888899


Q ss_pred             CCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCccccccCCCCcccccCCCCCCCC
Q 044158          747 QVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGP  810 (892)
Q Consensus       747 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~  810 (892)
                      +|+.|+|++|.++ .+|..+..+++|++|++++|++++..   ...+..+....+.+||+.|.+
T Consensus       302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChh
Confidence            9999999999999 68888999999999999999998763   356677888899999999865

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=9.3e-32  Score=292.81  Aligned_cols=304  Identities=27%  Similarity=0.384  Sum_probs=213.5

Q ss_pred             CCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcE
Q 044158          378 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY  457 (892)
Q Consensus       378 ~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~  457 (892)
                      +++|++|++++|.+. .++. + ..+++|++|++++|.+++..+  +..+++|++|++++|.++ .++.  +..+++|++
T Consensus        43 l~~L~~L~l~~~~i~-~~~~-~-~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~  114 (347)
T 4fmz_A           43 LESITKLVVAGEKVA-SIQG-I-EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLRE  114 (347)
T ss_dssp             HTTCSEEECCSSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSE
T ss_pred             cccccEEEEeCCccc-cchh-h-hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCcCCE
Confidence            344445555554444 3332 2 225666666666666654322  666666666666666665 3432  345666666


Q ss_pred             EEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcc
Q 044158          458 LLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHL  537 (892)
Q Consensus       458 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  537 (892)
                      |++++|.+++..+  +..+++|+.|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+
T Consensus       115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l  189 (347)
T 4fmz_A          115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI  189 (347)
T ss_dssp             EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred             EECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence            6666666665433  5667777777777775554433 36777777777777777765443  66777778888887777


Q ss_pred             cCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCcc
Q 044158          538 EGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLR  617 (892)
Q Consensus       538 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  617 (892)
                      .+..+  +..+++|+.|++++|.+++..   .+..+++|++|++++|++++..+  +..+++|++|++++|.+++.  ..
T Consensus       190 ~~~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~  260 (347)
T 4fmz_A          190 EDISP--LASLTSLHYFTAYVNQITDIT---PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NA  260 (347)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred             ccccc--ccCCCccceeecccCCCCCCc---hhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hh
Confidence            65433  777888888888888887632   27788888888888888875443  77888999999999988753  46


Q ss_pred             ccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCc
Q 044158          618 LCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPL  697 (892)
Q Consensus       618 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  697 (892)
                      +..+++|++|++++|++++. | .+.                                                    .+
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~-~-~~~----------------------------------------------------~l  286 (347)
T 4fmz_A          261 VKDLTKLKMLNVGSNQISDI-S-VLN----------------------------------------------------NL  286 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC-G-GGG----------------------------------------------------GC
T ss_pred             HhcCCCcCEEEccCCccCCC-h-hhc----------------------------------------------------CC
Confidence            78889999999999988742 2 111                                                    23


Q ss_pred             CccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCc
Q 044158          698 ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLT  759 (892)
Q Consensus       698 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  759 (892)
                      ++|+.|++++|.+++..|..++.+++|+.|++++|++++..|  ++.+++|+.||+++|.++
T Consensus       287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            468899999999998888899999999999999999998777  889999999999999886

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.5e-33  Score=299.18  Aligned_cols=252  Identities=29%  Similarity=0.505  Sum_probs=170.3

Q ss_pred             CCcEEeecCccCcC--CCCcccccCCCCcEEEccC-CcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEE
Q 044158          478 KLKRLNLDGNHFIG--GIPESLSNCSSLQGLYISD-NDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEIL  554 (892)
Q Consensus       478 ~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  554 (892)
                      +++.|++++|.+.+  .+|..+.++++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+.++++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            44555555555554  4455555555555555553 55555555555555555555555555555555556666666666


Q ss_pred             eCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCC-CCCEEecccccccccCCccccCCCCCCEEEcCCCc
Q 044158          555 DLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLS-QLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNN  633 (892)
Q Consensus       555 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~  633 (892)
                      ++++|.+++ .+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |++|++++|+
T Consensus       131 ~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          131 DFSYNALSG-TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             ECCSSEEES-CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             eCCCCccCC-cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            666666665 4455666666666666666666666666666666 677777777777766676666665 7777777777


Q ss_pred             CCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCcccccc
Q 044158          634 FSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGE  713 (892)
Q Consensus       634 l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  713 (892)
                      +++.+|..+..                                                    +++|+.|++++|.+++.
T Consensus       209 l~~~~~~~~~~----------------------------------------------------l~~L~~L~L~~N~l~~~  236 (313)
T 1ogq_A          209 LEGDASVLFGS----------------------------------------------------DKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             EEECCGGGCCT----------------------------------------------------TSCCSEEECCSSEECCB
T ss_pred             ccCcCCHHHhc----------------------------------------------------CCCCCEEECCCCceeee
Confidence            76655544432                                                    22567777777777766


Q ss_pred             CCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCc-cccc
Q 044158          714 IPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNN-LSGK  785 (892)
Q Consensus       714 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~-l~g~  785 (892)
                      +|. +..+++|++|+|++|++++.+|..++.+++|+.|||++|+++|.+|.. ..+++|+.+++++|+ +.|.
T Consensus       237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred             cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence            554 777888888888888888888888888889999999999999888876 788888899999887 6653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.98  E-value=1.7e-34  Score=327.93  Aligned_cols=360  Identities=19%  Similarity=0.186  Sum_probs=282.2

Q ss_pred             CCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCc----cCchhccCCCCCcEEECcCCcCccccchhHhhcCc-
Q 044158          379 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNG----SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF-  453 (892)
Q Consensus       379 ~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~-  453 (892)
                      ++|++|++++|++++.....++..+++|++|++++|.+.+    .++..+..+++|++|++++|.+.+..+..++..+. 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            5688899998888754444545668999999999999875    34667888899999999999988655666666666 


Q ss_pred             ---cCcEEEccCCcccc----cccccccccCCCcEEeecCccCcCCCCcccc-----cCCCCcEEEccCCcCCCC----c
Q 044158          454 ---NLEYLLLSNNSLQG----QLFSKKINLTKLKRLNLDGNHFIGGIPESLS-----NCSSLQGLYISDNDISGS----I  517 (892)
Q Consensus       454 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~  517 (892)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|++++.    +
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               69999999999984    5578888999999999999998754443332     356899999999998864    3


Q ss_pred             cccccCCCCCcEEECCCCcccCCCccccc-----CCCCCcEEeCCCCccCCCc---ccccccCCCCccEEEccCCccCcc
Q 044158          518 PTWMGNISFLDAIIMPDNHLEGPIPSEFC-----QLDYLEILDLSKNNIAGRP---LNGAFSKCSYLLTLDLCNNRLNGN  589 (892)
Q Consensus       518 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~---~~~~~~~~~~L~~L~L~~n~l~~~  589 (892)
                      +..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++..   ++..+..+++|++|++++|++++.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            56677789999999999998765554443     3668999999999998632   466778899999999999998754


Q ss_pred             C-----ChhhhcCCCCCEEeccccccccc----CCccccCCCCCCEEEcCCCcCCCCCCccccCCccccccccccccccc
Q 044158          590 I-----PNWMGRLSQLRYLILANNNFEGE----VPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTY  660 (892)
Q Consensus       590 ~-----p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~  660 (892)
                      .     +..+..+++|++|++++|.++..    ++..+..+++|++|++++|++++..+..+...-              
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--------------  308 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL--------------  308 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh--------------
Confidence            3     22333588999999999999864    567777899999999999988643222221100              


Q ss_pred             ccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCcccccc----CCccccccCCCCEEEccCccCCc
Q 044158          661 RNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGE----IPSRIGELIRIHTLNLSRNNLTG  736 (892)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~  736 (892)
                                                       ....+.|+.|++++|.+++.    +|..+..+++|+.|+|++|++++
T Consensus       309 ---------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  355 (461)
T 1z7x_W          309 ---------------------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED  355 (461)
T ss_dssp             ---------------------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred             ---------------------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence                                             01123689999999999876    56677888999999999999987


Q ss_pred             cccccccC-----CCCCCEEECCCCcCcc----cCCccccCCCCCCEEEccCCccccc
Q 044158          737 TIPVTFSN-----LRQVESLDLSYNNLTG----KIPPRLVELNALAVFTVAHNNLSGK  785 (892)
Q Consensus       737 ~~p~~~~~-----l~~L~~LdLs~N~l~g----~ip~~l~~l~~L~~l~ls~N~l~g~  785 (892)
                      ..+..+..     .++|+.|++++|++++    .+|..+..+++|++||+++|++++.
T Consensus       356 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            76665543     6799999999999996    7888999999999999999998764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.5e-30  Score=280.94  Aligned_cols=82  Identities=18%  Similarity=0.252  Sum_probs=48.8

Q ss_pred             ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCC------CCCCEEECCCCcCc--ccCCccccCCC
Q 044158          699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNL------RQVESLDLSYNNLT--GKIPPRLVELN  770 (892)
Q Consensus       699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~LdLs~N~l~--g~ip~~l~~l~  770 (892)
                      +|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|...      .+|+.|++++|.+.  +..|..+..++
T Consensus       242 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~  320 (332)
T 2ft3_A          242 TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT  320 (332)
T ss_dssp             TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBC
T ss_pred             CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccc
Confidence            3555555555555 455556666666666666666665555555442      45667777777766  55566667777


Q ss_pred             CCCEEEccCCc
Q 044158          771 ALAVFTVAHNN  781 (892)
Q Consensus       771 ~L~~l~ls~N~  781 (892)
                      .|+.+++++|+
T Consensus       321 ~L~~l~l~~n~  331 (332)
T 2ft3_A          321 DRLAIQFGNYK  331 (332)
T ss_dssp             CSTTEEC----
T ss_pred             hhhhhhccccc
Confidence            77777776663

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4.2e-30  Score=277.29  Aligned_cols=269  Identities=23%  Similarity=0.268  Sum_probs=135.7

Q ss_pred             cCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECC
Q 044158          454 NLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMP  533 (892)
Q Consensus       454 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~  533 (892)
                      ++++|++++|++++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|+++. +|..+.  ++|++|+++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECC
Confidence            34444444444444333344444444444444444444444444444455555555544442 222221  345555555


Q ss_pred             CCcccCCCcccccCCCCCcEEeCCCCccCCC-cccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccc
Q 044158          534 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGR-PLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEG  612 (892)
Q Consensus       534 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  612 (892)
                      +|.+++..+..+.++++|++|++++|.++.. ..+..+..+++|++|++++|+++. +|..+.  ++|++|++++|++++
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~  206 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITK  206 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCE
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCc
Confidence            5555444444455555555555555554321 123344555555555555555542 333222  455555555555555


Q ss_pred             cCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeeccccccc
Q 044158          613 EVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTY  692 (892)
Q Consensus       613 ~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  692 (892)
                      ..|..+..+++|++|++++|++++..+..+..                                                
T Consensus       207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------------------------------  238 (330)
T 1xku_A          207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLAN------------------------------------------------  238 (330)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGG------------------------------------------------
T ss_pred             cCHHHhcCCCCCCEEECCCCcCceeChhhccC------------------------------------------------
Confidence            55555555555555555555555333322221                                                


Q ss_pred             CCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccC------CCCCCEEECCCCcCcc--cCCc
Q 044158          693 KGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSN------LRQVESLDLSYNNLTG--KIPP  764 (892)
Q Consensus       693 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~LdLs~N~l~g--~ip~  764 (892)
                          +++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..|..      ...++.|++++|.+..  ..|.
T Consensus       239 ----l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~  313 (330)
T 1xku_A          239 ----TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS  313 (330)
T ss_dssp             ----STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGG
T ss_pred             ----CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcc
Confidence                124555555555555 45556666666666666666666555555533      2566677777777652  4456


Q ss_pred             cccCCCCCCEEEccCCc
Q 044158          765 RLVELNALAVFTVAHNN  781 (892)
Q Consensus       765 ~l~~l~~L~~l~ls~N~  781 (892)
                      .+..+..++.+++++|+
T Consensus       314 ~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          314 TFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             GGTTCCCGGGEEC----
T ss_pred             ccccccceeEEEecccC
Confidence            66667777777777663

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.3e-33  Score=320.58  Aligned_cols=306  Identities=18%  Similarity=0.140  Sum_probs=188.2

Q ss_pred             CCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCC----CCCCCCCCCCccEEEccCCcCCCCCchhhhhcCC-
Q 044158          330 HHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGP----FRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLP-  404 (892)
Q Consensus       330 ~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~-  404 (892)
                      +++++|+++++++.......++..+++|++|++++|.+++.    .+..+..+++|++|++++|.+.+..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            45777888888777655555577888899999988887642    2234556788888888888887555555555555 


Q ss_pred             ---CCcEEECcCCcCCc----cCchhccCCCCCcEEECcCCcCccccchhHhh----cCccCcEEEccCCcccccc----
Q 044158          405 ---NLGFLTISFNAFNG----SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAM----GCFNLEYLLLSNNSLQGQL----  469 (892)
Q Consensus       405 ---~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~----~~~~L~~L~L~~n~l~~~~----  469 (892)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+..    ..++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               69999999998874    45778888889999999999887544443332    2456888888888877643    


Q ss_pred             cccccccCCCcEEeecCccCcCCCCcccc-----cCCCCcEEEccCCcCCCC----ccccccCCCCCcEEECCCCcccCC
Q 044158          470 FSKKINLTKLKRLNLDGNHFIGGIPESLS-----NCSSLQGLYISDNDISGS----IPTWMGNISFLDAIIMPDNHLEGP  540 (892)
Q Consensus       470 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~  540 (892)
                      +..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            44555667788888887776644333332     245777777777777653    345555566666666666665432


Q ss_pred             C-----cccccCCCCCcEEeCCCCccCCCc---ccccccCCCCccEEEccCCccCccCChhhhc-----CCCCCEEeccc
Q 044158          541 I-----PSEFCQLDYLEILDLSKNNIAGRP---LNGAFSKCSYLLTLDLCNNRLNGNIPNWMGR-----LSQLRYLILAN  607 (892)
Q Consensus       541 ~-----~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~L~~  607 (892)
                      .     +..+..+++|++|++++|.++...   ++..+..+++|++|++++|.+++..+..+..     .++|++|++++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence            2     111223555666666666555311   3344444555555555555554333322221     13555555555


Q ss_pred             cccccc----CCccccCCCCCCEEEcCCCcCC
Q 044158          608 NNFEGE----VPLRLCQLQKLRLLDLSHNNFS  635 (892)
Q Consensus       608 n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~  635 (892)
                      |.+++.    ++..+..+++|++|++++|+++
T Consensus       323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  354 (461)
T 1z7x_W          323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLE  354 (461)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred             CCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence            555433    2333344455555555555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=9e-30  Score=274.70  Aligned_cols=244  Identities=22%  Similarity=0.247  Sum_probs=156.3

Q ss_pred             CCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEE
Q 044158          379 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL  458 (892)
Q Consensus       379 ~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L  458 (892)
                      .+++.++++++.++ .+|..+   .+.+++|++++|.+++..+..|.++++|++|++++|++++..|.. +..+++|++|
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L  105 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERL  105 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEE
T ss_pred             CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH-hcCCCCCCEE
Confidence            36788888888887 677654   467888888888888777767888888888888888887333443 3567777777


Q ss_pred             EccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCC--CccccccCCCCCcEEECCCCc
Q 044158          459 LLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISG--SIPTWMGNISFLDAIIMPDNH  536 (892)
Q Consensus       459 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~L~~n~  536 (892)
                      ++++|.++. +|..+.  ++|++|++++|++.+..+..+.++++|++|++++|++..  ..+..+..+++|+.|++++|.
T Consensus       106 ~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          106 YLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             ECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            777777764 333332  567777777777766655666777777777777776642  445556666666666666666


Q ss_pred             ccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCc
Q 044158          537 LEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPL  616 (892)
Q Consensus       537 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~  616 (892)
                      ++. +|..+.  ++|++|++++|++++ ..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|.
T Consensus       183 l~~-l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~  257 (330)
T 1xku_A          183 ITT-IPQGLP--PSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG  257 (330)
T ss_dssp             CCS-CCSSCC--TTCSEEECTTSCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred             ccc-CCcccc--ccCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCCh
Confidence            653 333332  456666666666554 23445555666666666666665555555555666666666666655 4555


Q ss_pred             cccCCCCCCEEEcCCCcCC
Q 044158          617 RLCQLQKLRLLDLSHNNFS  635 (892)
Q Consensus       617 ~~~~l~~L~~L~Ls~N~l~  635 (892)
                      .+..+++|++|++++|+++
T Consensus       258 ~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          258 GLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             TTTTCSSCCEEECCSSCCC
T ss_pred             hhccCCCcCEEECCCCcCC
Confidence            5555566666666666555

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.5e-29  Score=273.19  Aligned_cols=266  Identities=20%  Similarity=0.253  Sum_probs=163.3

Q ss_pred             CCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCC
Q 044158          478 KLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLS  557 (892)
Q Consensus       478 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  557 (892)
                      +|+.|++++|.+.+..|..|.++++|++|++++|++++..|..+..+++|++|++++|.++ .+|..+.  ++|++|+++
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~  131 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH  131 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence            3444444444444333334444444444444444444444444444444444444444444 2333332  466666666


Q ss_pred             CCccCCCcccccccCCCCccEEEccCCccC--ccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCC
Q 044158          558 KNNIAGRPLNGAFSKCSYLLTLDLCNNRLN--GNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS  635 (892)
Q Consensus       558 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  635 (892)
                      +|+++++ .+..|..+++|++|++++|.++  +..|..+..+ +|++|++++|++++ +|..+.  ++|++|++++|+++
T Consensus       132 ~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~  206 (332)
T 2ft3_A          132 DNRIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQ  206 (332)
T ss_dssp             SSCCCCC-CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCC
T ss_pred             CCccCcc-CHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCC
Confidence            6666652 2345666667777777777664  2455566666 77777777777774 454443  67777888888777


Q ss_pred             CCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCC
Q 044158          636 GQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIP  715 (892)
Q Consensus       636 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  715 (892)
                      +..|..+..                                                    +++|+.|++++|.+++..|
T Consensus       207 ~~~~~~l~~----------------------------------------------------l~~L~~L~L~~N~l~~~~~  234 (332)
T 2ft3_A          207 AIELEDLLR----------------------------------------------------YSKLYRLGLGHNQIRMIEN  234 (332)
T ss_dssp             CCCTTSSTT----------------------------------------------------CTTCSCCBCCSSCCCCCCT
T ss_pred             ccCHHHhcC----------------------------------------------------CCCCCEEECCCCcCCcCCh
Confidence            554444432                                                    2357778888888887777


Q ss_pred             ccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCC------CCCCEEEccCCccc--ccCC
Q 044158          716 SRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVEL------NALAVFTVAHNNLS--GKIP  787 (892)
Q Consensus       716 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l------~~L~~l~ls~N~l~--g~ip  787 (892)
                      ..+..+++|+.|+|++|+++ .+|..++.+++|+.|++++|++++..+..+...      ..|+.+++++|++.  +..|
T Consensus       235 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~  313 (332)
T 2ft3_A          235 GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP  313 (332)
T ss_dssp             TGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred             hHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence            77888888888888888888 677778888888888888888887666666543      56788888888876  4444


Q ss_pred             ccccccCCCCcccccCC
Q 044158          788 ERIAQFATFDEDSYEGN  804 (892)
Q Consensus       788 ~~~~~~~~~~~~~~~gN  804 (892)
                      ..+..+..+....+.+|
T Consensus       314 ~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          314 ATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             GGGTTBCCSTTEEC---
T ss_pred             ccccccchhhhhhcccc
Confidence            44455555555555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=6.4e-29  Score=270.66  Aligned_cols=280  Identities=20%  Similarity=0.183  Sum_probs=164.6

Q ss_pred             CcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEcc
Q 044158          430 LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYIS  509 (892)
Q Consensus       430 L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~  509 (892)
                      ....+.+++.++ .+|..++   ++|++|++++|.+++..+..+.++++|++|++++|++++..|..|.++++|++|+++
T Consensus        33 ~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (353)
T 2z80_A           33 NGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS  108 (353)
T ss_dssp             TSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence            334555555555 5554332   355666666666655544455666666666666666665555566666666666666


Q ss_pred             CCcCCCCccccccCCCCCcEEECCCCcccCCCc-ccccCCCCCcEEeCCCCc-cCCCcccccccCCCCccEEEccCCccC
Q 044158          510 DNDISGSIPTWMGNISFLDAIIMPDNHLEGPIP-SEFCQLDYLEILDLSKNN-IAGRPLNGAFSKCSYLLTLDLCNNRLN  587 (892)
Q Consensus       510 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l~  587 (892)
                      +|++++..+..+..+++|++|++++|++++..+ ..+..+++|++|++++|. ++. ..+..+.++++|++|++++|+++
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc-cCHHHccCCCCCCEEECCCCCcC
Confidence            666665444445666666666666666653333 356666677777777663 443 23456666777777777777777


Q ss_pred             ccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccc
Q 044158          588 GNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIV  667 (892)
Q Consensus       588 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  667 (892)
                      +..|..+..+++|++|++++|+++...+..+..+++|+.|++++|++++..+..+..                       
T Consensus       188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-----------------------  244 (353)
T 2z80_A          188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST-----------------------  244 (353)
T ss_dssp             EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------------
T ss_pred             ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc-----------------------
Confidence            666777777777777777777765332223344677777777777766433222111                       


Q ss_pred             cccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCc----ccccccc
Q 044158          668 SYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTG----TIPVTFS  743 (892)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~  743 (892)
                                                                        ......++.++|++|.+++    .+|..++
T Consensus       245 --------------------------------------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~  274 (353)
T 2z80_A          245 --------------------------------------------------GETNSLIKKFTFRNVKITDESLFQVMKLLN  274 (353)
T ss_dssp             ----------------------------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHH
T ss_pred             --------------------------------------------------ccccchhhccccccccccCcchhhhHHHHh
Confidence                                                              0112234444444444443    3556666


Q ss_pred             CCCCCCEEECCCCcCcccCCcc-ccCCCCCCEEEccCCcccccCCc
Q 044158          744 NLRQVESLDLSYNNLTGKIPPR-LVELNALAVFTVAHNNLSGKIPE  788 (892)
Q Consensus       744 ~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~l~ls~N~l~g~ip~  788 (892)
                      .+++|+.||+++|+++ .+|.. +..+++|++|++++|+++|.+|.
T Consensus       275 ~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          275 QISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             cccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            6777777777777776 44444 46677777777777777776653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.8e-28  Score=261.53  Aligned_cols=250  Identities=20%  Similarity=0.265  Sum_probs=174.5

Q ss_pred             EEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCC--CcccccCCCCCcEEeCCC
Q 044158          481 RLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGP--IPSEFCQLDYLEILDLSK  558 (892)
Q Consensus       481 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~  558 (892)
                      .++.+++.++ .+|..+.  ++|++|++++|+++...+..+..+++|++|++++|.++..  .+..+..+++|++|++++
T Consensus        11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            4445554444 2333222  4556666666666544444455666666666666665522  245555667777777777


Q ss_pred             CccCCCcccccccCCCCccEEEccCCccCccCC-hhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCC-
Q 044158          559 NNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP-NWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSG-  636 (892)
Q Consensus       559 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g-  636 (892)
                      |.++.  ++..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++ 
T Consensus        88 n~i~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           88 NGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             CSEEE--EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             Ccccc--ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            77663  44556677777777777777765544 466777777777777777777777777777777888887777764 


Q ss_pred             CCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCc
Q 044158          637 QIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPS  716 (892)
Q Consensus       637 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  716 (892)
                      .+|..+..                                                    +++|+.|++++|.+++..|.
T Consensus       166 ~~~~~~~~----------------------------------------------------l~~L~~L~Ls~n~l~~~~~~  193 (306)
T 2z66_A          166 FLPDIFTE----------------------------------------------------LRNLTFLDLSQCQLEQLSPT  193 (306)
T ss_dssp             EECSCCTT----------------------------------------------------CTTCCEEECTTSCCCEECTT
T ss_pred             cchhHHhh----------------------------------------------------CcCCCEEECCCCCcCCcCHH
Confidence            34443332                                                    33577788888888877788


Q ss_pred             cccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCC-CCCEEEccCCcccccCC
Q 044158          717 RIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELN-ALAVFTVAHNNLSGKIP  787 (892)
Q Consensus       717 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~l~ls~N~l~g~ip  787 (892)
                      .+..+++|+.|+|++|++++..+..+..+++|+.||+++|++++.+|..+..++ +|++|++++|++++..+
T Consensus       194 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            888888999999999999887777888899999999999999988888888884 89999999999987654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.6e-28  Score=267.53  Aligned_cols=256  Identities=19%  Similarity=0.248  Sum_probs=152.1

Q ss_pred             CCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEc
Q 044158          502 SLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDL  581 (892)
Q Consensus       502 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L  581 (892)
                      +|++|++++|++++..+..+..+++|+.|++++|.+++..|..|.++++|++|++++|++++++ +..+.++++|++|++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTCSEEEC
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccCCEEEC
Confidence            4444444444444333334444444444444444444444444555555555555555554311 223445555555555


Q ss_pred             cCCccCccCC-hhhhcCCCCCEEecccc-cccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccc
Q 044158          582 CNNRLNGNIP-NWMGRLSQLRYLILANN-NFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPT  659 (892)
Q Consensus       582 ~~n~l~~~~p-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~  659 (892)
                      ++|++++..+ ..+..+++|++|++++| .+.+..+..+..+++|++|++++|++++..|..+..+              
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l--------------  197 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI--------------  197 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC--------------
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc--------------
Confidence            5555543222 24455555555555555 2443444455555555555555555554444433321              


Q ss_pred             cccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCcccc
Q 044158          660 YRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIP  739 (892)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  739 (892)
                                                            ++|+.|++++|.++...+..+..+++|+.|++++|++++..+
T Consensus       198 --------------------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  239 (353)
T 2z80_A          198 --------------------------------------QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF  239 (353)
T ss_dssp             --------------------------------------SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred             --------------------------------------ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc
Confidence                                                  245566666666643222234456777788888887776655


Q ss_pred             cccc---CCCCCCEEECCCCcCcc----cCCccccCCCCCCEEEccCCcccccCCcc-ccccCCCCcccccCCCCCCCCC
Q 044158          740 VTFS---NLRQVESLDLSYNNLTG----KIPPRLVELNALAVFTVAHNNLSGKIPER-IAQFATFDEDSYEGNPFLCGPP  811 (892)
Q Consensus       740 ~~~~---~l~~L~~LdLs~N~l~g----~ip~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~~~~~~~~~~gN~~lc~~~  811 (892)
                      ..+.   ....++.+++++|.+++    .+|..+..+++|+.||+++|+++ .+|.. +..+..+....+.+||+.|.|+
T Consensus       240 ~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          240 SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             C------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            5443   46778999999999987    47888999999999999999999 56654 4678888899999999999875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=7e-30  Score=299.64  Aligned_cols=276  Identities=13%  Similarity=0.087  Sum_probs=119.5

Q ss_pred             CCCCccEEEccCCcCccccchhhhhcCCC-CCEEEccCCcC-cCC-CCCCCCCCCCccEEEccCCcCCCCCch---hhhh
Q 044158          328 HQHHLEFVIISDVNMRGEFPSWLLENNTN-LRSIILANNSL-SGP-FRLPTRSRKNIIALDISYNKLQGHIPV---EIGK  401 (892)
Q Consensus       328 ~~~~L~~L~l~~~~~~~~~p~~~~~~~~~-L~~L~L~~n~l-~~~-~~~~~~~~~~L~~L~l~~n~l~~~i~~---~~~~  401 (892)
                      .+++|++|++++|.+.+..+..+...++. |++|++++|.. +.. .......+++|++|++++|.+++.-..   .+..
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            55667777777666665555443322333 66666666541 100 000112345555555555555433111   1222


Q ss_pred             cCCCCcEEECcCCcCCc----cCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCccc---cccccccc
Q 044158          402 VLPNLGFLTISFNAFNG----SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ---GQLFSKKI  474 (892)
Q Consensus       402 ~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~---~~~~~~~~  474 (892)
                      .+++|++|++++|.+++    .++..+.++++|++|++++|.+. .++.. +..+++|+.|+++.....   +..+..+.
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHH-HhhhhHHHhhcccccccccchHHHHHHhh
Confidence            35555555555555541    22233344555555555555554 24422 234555555555432211   12223334


Q ss_pred             ccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCcc-ccccCCCCCcEEECCCCcccCCCcccccCCCCCcE
Q 044158          475 NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIP-TWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEI  553 (892)
Q Consensus       475 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  553 (892)
                      .+++|+.|+++++. .+.+|..+..+++|++|++++|.+++... ..+..+++|+.|+++++-..+.++..+..+++|++
T Consensus       268 ~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~  346 (592)
T 3ogk_B          268 FPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR  346 (592)
T ss_dssp             CCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred             ccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence            44555555554432 22344444445555555555555432221 22344455555555422111122222233444555


Q ss_pred             EeCC-----------CCccCCCcccccccCCCCccEEEccCCccCccCChhhhc-CCCCCEEecc
Q 044158          554 LDLS-----------KNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGR-LSQLRYLILA  606 (892)
Q Consensus       554 L~Ls-----------~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~  606 (892)
                      |+++           .|.+++..++.....+++|++|+++.|.+++..+..++. +++|+.|+++
T Consensus       347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~  411 (592)
T 3ogk_B          347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV  411 (592)
T ss_dssp             EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred             EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence            5554           133332112222333444555555444444443333332 4445555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=6.5e-28  Score=257.22  Aligned_cols=259  Identities=20%  Similarity=0.239  Sum_probs=184.6

Q ss_pred             CCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCC--ccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEE
Q 044158          477 TKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGS--IPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEIL  554 (892)
Q Consensus       477 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  554 (892)
                      ++|++|++++|.+....+..|.++++|++|++++|+++..  .+..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            3455555555555433333345555555555555555422  2344455666666666666665 355567777788888


Q ss_pred             eCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccc-cCCccccCCCCCCEEEcCCCc
Q 044158          555 DLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEG-EVPLRLCQLQKLRLLDLSHNN  633 (892)
Q Consensus       555 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~  633 (892)
                      ++++|++++.+....+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|+
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            8888887764433567788888888888888887778888888888888888888876 577888888889999999988


Q ss_pred             CCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCcccccc
Q 044158          634 FSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGE  713 (892)
Q Consensus       634 l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  713 (892)
                      +++..|..+..                                                    +++|+.|++++|.+++.
T Consensus       187 l~~~~~~~~~~----------------------------------------------------l~~L~~L~L~~N~l~~~  214 (306)
T 2z66_A          187 LEQLSPTAFNS----------------------------------------------------LSSLQVLNMSHNNFFSL  214 (306)
T ss_dssp             CCEECTTTTTT----------------------------------------------------CTTCCEEECTTSCCSBC
T ss_pred             cCCcCHHHhcC----------------------------------------------------CCCCCEEECCCCccCcc
Confidence            88655655443                                                    23688899999999887


Q ss_pred             CCccccccCCCCEEEccCccCCccccccccCC-CCCCEEECCCCcCcccCCc--cccCCCCCCEEEccCCcccccCCc
Q 044158          714 IPSRIGELIRIHTLNLSRNNLTGTIPVTFSNL-RQVESLDLSYNNLTGKIPP--RLVELNALAVFTVAHNNLSGKIPE  788 (892)
Q Consensus       714 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~LdLs~N~l~g~ip~--~l~~l~~L~~l~ls~N~l~g~ip~  788 (892)
                      .+..+..+++|+.|+|++|++++.+|..+..+ ++|+.|+|++|.+++..+.  ...-+...+.+.+..+.+.+..|.
T Consensus       215 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~  292 (306)
T 2z66_A          215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS  292 (306)
T ss_dssp             CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred             ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence            77788999999999999999999999999988 4999999999999875321  112223344455666777777665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.2e-27  Score=256.60  Aligned_cols=235  Identities=20%  Similarity=0.282  Sum_probs=157.2

Q ss_pred             cCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEe
Q 044158          476 LTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILD  555 (892)
Q Consensus       476 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  555 (892)
                      .+.++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+.++++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            466777777777776 56666777777777777777776 56666666666666666666665 4455555555555555


Q ss_pred             CCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCC
Q 044158          556 LSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS  635 (892)
Q Consensus       556 Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  635 (892)
                      +++|++.+ .+|..+..      .         ..+..++++++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus       157 L~~n~~~~-~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          157 IRACPELT-ELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEEETTCC-CCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred             CCCCCCcc-ccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence            55555444 33333221      0         00111234666777777777666 56666666777777777777666


Q ss_pred             CCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCC
Q 044158          636 GQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIP  715 (892)
Q Consensus       636 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  715 (892)
                      + +|..+..                                                    +++|+.|++++|.+.+.+|
T Consensus       220 ~-l~~~l~~----------------------------------------------------l~~L~~L~Ls~n~~~~~~p  246 (328)
T 4fcg_A          220 A-LGPAIHH----------------------------------------------------LPKLEELDLRGCTALRNYP  246 (328)
T ss_dssp             C-CCGGGGG----------------------------------------------------CTTCCEEECTTCTTCCBCC
T ss_pred             c-Cchhhcc----------------------------------------------------CCCCCEEECcCCcchhhhH
Confidence            3 4433322                                                    2256677777777777777


Q ss_pred             ccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCccc
Q 044158          716 SRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS  783 (892)
Q Consensus       716 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~  783 (892)
                      ..++.+++|+.|+|++|++.+.+|..++++++|+.|||++|++.+.+|..+.++++|+.+++..|.+.
T Consensus       247 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            77888888888888888888888888888888888888888888888888888888888888766543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=8.1e-30  Score=299.12  Aligned_cols=410  Identities=13%  Similarity=0.064  Sum_probs=290.5

Q ss_pred             ccccCCCCccEEEccCCcCc---cccc-----------hhhhhcCCCCCEEEccCCcCcCCCCCCCCC-CC-CccEEEcc
Q 044158          324 KFLYHQHHLEFVIISDVNMR---GEFP-----------SWLLENNTNLRSIILANNSLSGPFRLPTRS-RK-NIIALDIS  387 (892)
Q Consensus       324 ~~l~~~~~L~~L~l~~~~~~---~~~p-----------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~-~L~~L~l~  387 (892)
                      ..+..+++|++|+++++...   +.+|           ..+...+++|++|+|++|.+++.....+.. ++ +|++|+++
T Consensus        67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~  146 (592)
T 3ogk_B           67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD  146 (592)
T ss_dssp             HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred             HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence            34445666777777665321   1111           223447899999999999776543333333 33 49999999


Q ss_pred             CCc-CCCCCchhhhhcCCCCcEEECcCCcCCcc----CchhccCCCCCcEEECcCCcCcc----ccchhHhhcCccCcEE
Q 044158          388 YNK-LQGHIPVEIGKVLPNLGFLTISFNAFNGS----IPSSFGDMNSLIYLDLSNNQLTG----EIPEHLAMGCFNLEYL  458 (892)
Q Consensus       388 ~n~-l~~~i~~~~~~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n~l~~----~i~~~~~~~~~~L~~L  458 (892)
                      +|. ++......+...+++|++|++++|.+.+.    ++..+..+++|++|++++|.+++    .++. ++..+++|+.|
T Consensus       147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L  225 (592)
T 3ogk_B          147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSV  225 (592)
T ss_dssp             SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEE
T ss_pred             CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEE
Confidence            886 22111122333589999999999988765    33455678899999999998862    2222 33578999999


Q ss_pred             EccCCcccccccccccccCCCcEEeecCccCc---CCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCC
Q 044158          459 LLSNNSLQGQLFSKKINLTKLKRLNLDGNHFI---GGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDN  535 (892)
Q Consensus       459 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n  535 (892)
                      ++++|.+.+ ++..+..+++|+.|+++.....   +..+..+..+++|+.|+++++. .+.+|..+..+++|++|++++|
T Consensus       226 ~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~  303 (592)
T 3ogk_B          226 KVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYA  303 (592)
T ss_dssp             ECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTC
T ss_pred             eccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCC
Confidence            999998886 5677888999999999864332   2344567788899999998864 3467778888999999999999


Q ss_pred             cccCCCc-ccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccC-----------CccCcc-CChhhhcCCCCCE
Q 044158          536 HLEGPIP-SEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCN-----------NRLNGN-IPNWMGRLSQLRY  602 (892)
Q Consensus       536 ~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~-----------n~l~~~-~p~~~~~l~~L~~  602 (892)
                      .+++... ..+..+++|++|+++ +.+....++.....+++|++|++++           |.+++. ++.....+++|++
T Consensus       304 ~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~  382 (592)
T 3ogk_B          304 LLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY  382 (592)
T ss_dssp             CCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred             cCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence            8765443 346788999999998 5554434455567789999999993           566543 2333556899999


Q ss_pred             EecccccccccCCccccC-CCCCCEEEcC----CCcCCCCCCc-cccCCcccccccccccccccccccccccccCCCCCC
Q 044158          603 LILANNNFEGEVPLRLCQ-LQKLRLLDLS----HNNFSGQIPP-CLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMG  676 (892)
Q Consensus       603 L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls----~N~l~g~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  676 (892)
                      |+++.|.+++..+..+.. +++|+.|+++    .|++++.... .+...                               
T Consensus       383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~-------------------------------  431 (592)
T 3ogk_B          383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL-------------------------------  431 (592)
T ss_dssp             EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH-------------------------------
T ss_pred             EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH-------------------------------
Confidence            999989988877777765 8899999996    5666532110 00000                               


Q ss_pred             CcceeEeeecccccccCCCCcCccceeeccCc--cccccCCccccc-cCCCCEEEccCccCCc-cccccccCCCCCCEEE
Q 044158          677 EKETIDFTTKERSYTYKGQPLESIHGLDLSCN--KLIGEIPSRIGE-LIRIHTLNLSRNNLTG-TIPVTFSNLRQVESLD  752 (892)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~Ld  752 (892)
                                       ...+++|+.|+++++  .+++..+..++. +++|+.|+|++|++++ .++..+..+++|+.|+
T Consensus       432 -----------------~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  494 (592)
T 3ogk_B          432 -----------------LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE  494 (592)
T ss_dssp             -----------------HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEE
T ss_pred             -----------------HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeee
Confidence                             012447899999753  477766666654 8899999999999987 4556668899999999


Q ss_pred             CCCCcCccc-CCccccCCCCCCEEEccCCccccc
Q 044158          753 LSYNNLTGK-IPPRLVELNALAVFTVAHNNLSGK  785 (892)
Q Consensus       753 Ls~N~l~g~-ip~~l~~l~~L~~l~ls~N~l~g~  785 (892)
                      +++|.+++. ++.....+++|+.|++++|+++..
T Consensus       495 l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          495 MRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             EESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             ccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            999998865 444556789999999999998765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=6.3e-27  Score=262.85  Aligned_cols=252  Identities=25%  Similarity=0.299  Sum_probs=217.9

Q ss_pred             CCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCC
Q 044158          478 KLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLS  557 (892)
Q Consensus       478 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  557 (892)
                      ..+.++.++..++ .+|..+.  ++++.|+|++|++++..+..|..+++|+.|+|++|.+++..+..|.++++|++|+|+
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            4678888888877 5676554  689999999999998888899999999999999999998888899999999999999


Q ss_pred             CCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccccc-ccccCCccccCCCCCCEEEcCCCcCCC
Q 044158          558 KNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNN-FEGEVPLRLCQLQKLRLLDLSHNNFSG  636 (892)
Q Consensus       558 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~g  636 (892)
                      +|+++.++ +..|..+++|++|++++|+++...+..|..+++|++|++++|. +....+..+..+++|++|++++|+++ 
T Consensus       121 ~n~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-  198 (440)
T 3zyj_A          121 DNRLTTIP-NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-  198 (440)
T ss_dssp             SSCCSSCC-TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred             CCcCCeeC-HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence            99999733 5578999999999999999997777789999999999999954 54444457889999999999999987 


Q ss_pred             CCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCc
Q 044158          637 QIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPS  716 (892)
Q Consensus       637 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  716 (892)
                      .+|. +                                                    ..+++|+.|+|++|.+++..|.
T Consensus       199 ~~~~-~----------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~  225 (440)
T 3zyj_A          199 EIPN-L----------------------------------------------------TPLIKLDELDLSGNHLSAIRPG  225 (440)
T ss_dssp             SCCC-C----------------------------------------------------TTCSSCCEEECTTSCCCEECTT
T ss_pred             cccc-c----------------------------------------------------CCCcccCEEECCCCccCccChh
Confidence            4442 1                                                    1244689999999999988899


Q ss_pred             cccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCC
Q 044158          717 RIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIP  787 (892)
Q Consensus       717 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip  787 (892)
                      .|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++|++.+...
T Consensus       226 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            99999999999999999999999999999999999999999998888888999999999999999987554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=3.7e-27  Score=252.82  Aligned_cols=236  Identities=17%  Similarity=0.239  Sum_probs=203.0

Q ss_pred             cCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEE
Q 044158          451 GCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAI  530 (892)
Q Consensus       451 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  530 (892)
                      ....++.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|+++ .+|..+..+++|+.|
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            3578999999999998 66778888999999999999999 88999999999999999999999 779999999999999


Q ss_pred             ECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccc
Q 044158          531 IMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNF  610 (892)
Q Consensus       531 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l  610 (892)
                      ++++|++.+.+|..+...                ..+..+.++++|++|++++|+++ .+|..++.+++|++|++++|++
T Consensus       156 ~L~~n~~~~~~p~~~~~~----------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l  218 (328)
T 4fcg_A          156 SIRACPELTELPEPLAST----------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL  218 (328)
T ss_dssp             EEEEETTCCCCCSCSEEE----------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred             ECCCCCCccccChhHhhc----------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence            999999988888766531                12235677888888888888887 7788888888888888888888


Q ss_pred             cccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeeccccc
Q 044158          611 EGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSY  690 (892)
Q Consensus       611 ~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  690 (892)
                      ++ +|..+..+++|++|++++|++.+.+|..+..+                                             
T Consensus       219 ~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l---------------------------------------------  252 (328)
T 4fcg_A          219 SA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGR---------------------------------------------  252 (328)
T ss_dssp             CC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC---------------------------------------------
T ss_pred             Cc-CchhhccCCCCCEEECcCCcchhhhHHHhcCC---------------------------------------------
Confidence            84 66678888888889998888888887766543                                             


Q ss_pred             ccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCc
Q 044158          691 TYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLT  759 (892)
Q Consensus       691 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  759 (892)
                             ++|+.|++++|.+.+.+|..++.+++|+.|+|++|++.+.+|..++++++|+.++++.|.+.
T Consensus       253 -------~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          253 -------APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             -------CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             -------CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence                   36888999998888899999999999999999999999999999999999999999987766

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1e-26  Score=262.11  Aligned_cols=252  Identities=21%  Similarity=0.230  Sum_probs=219.2

Q ss_pred             CCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCC
Q 044158          478 KLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLS  557 (892)
Q Consensus       478 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  557 (892)
                      ....++.++..++ .+|..+.  +++++|+|++|++++..+..|..+++|+.|+|++|.+++..+..|.++++|++|+|+
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            4567888888877 5666554  689999999999998889999999999999999999998888999999999999999


Q ss_pred             CCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccc-cccccCCccccCCCCCCEEEcCCCcCCC
Q 044158          558 KNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANN-NFEGEVPLRLCQLQKLRLLDLSHNNFSG  636 (892)
Q Consensus       558 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~g  636 (892)
                      +|+++++ .+..|..+++|++|+|++|++++..+..+..+++|++|++++| .+....+..+..+++|++|++++|++++
T Consensus       132 ~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          132 DNWLTVI-PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             SSCCSBC-CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             CCcCCcc-ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence            9999973 3567899999999999999999777778999999999999995 4554444568899999999999999973


Q ss_pred             CCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCc
Q 044158          637 QIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPS  716 (892)
Q Consensus       637 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  716 (892)
                       +|. +                                                    ..+++|+.|++++|.+++..|.
T Consensus       211 -~~~-~----------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~  236 (452)
T 3zyi_A          211 -MPN-L----------------------------------------------------TPLVGLEELEMSGNHFPEIRPG  236 (452)
T ss_dssp             -CCC-C----------------------------------------------------TTCTTCCEEECTTSCCSEECGG
T ss_pred             -ccc-c----------------------------------------------------cccccccEEECcCCcCcccCcc
Confidence             332 1                                                    1244789999999999998899


Q ss_pred             cccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCC
Q 044158          717 RIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIP  787 (892)
Q Consensus       717 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip  787 (892)
                      .|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++|++.+...
T Consensus       237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            99999999999999999999999999999999999999999998888888999999999999999987655

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=2.5e-26  Score=257.99  Aligned_cols=249  Identities=27%  Similarity=0.249  Sum_probs=187.5

Q ss_pred             cCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECC
Q 044158          454 NLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMP  533 (892)
Q Consensus       454 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~  533 (892)
                      ....++.++..++. +|..+  .++++.|+|++|++.+..+..|.++++|++|+|++|++++..+..|..+++|+.|+|+
T Consensus        44 ~~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLRE-VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCSS-CCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcCc-CCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            34567777777764 34433  2678888888888887777778888888888888888887777788888888888888


Q ss_pred             CCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccC-ChhhhcCCCCCEEecccccccc
Q 044158          534 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNI-PNWMGRLSQLRYLILANNNFEG  612 (892)
Q Consensus       534 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~  612 (892)
                      +|++++..+..|..+++|++|++++|+++.+ .+..|..+++|++|++++|+..+.+ +..|.++++|++|++++|+++ 
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-  198 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-  198 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCccccc-CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence            8888866666788888888888888888763 3456778888888888884433343 446778888888888888887 


Q ss_pred             cCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeeccccccc
Q 044158          613 EVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTY  692 (892)
Q Consensus       613 ~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  692 (892)
                      .+| .+..+++|+.|+|++|++++..|..+..                                                
T Consensus       199 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------  229 (440)
T 3zyj_A          199 EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQG------------------------------------------------  229 (440)
T ss_dssp             SCC-CCTTCSSCCEEECTTSCCCEECTTTTTT------------------------------------------------
T ss_pred             ccc-ccCCCcccCEEECCCCccCccChhhhcc------------------------------------------------
Confidence            445 4677888888888888887655554443                                                


Q ss_pred             CCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcc
Q 044158          693 KGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG  760 (892)
Q Consensus       693 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g  760 (892)
                          +++|+.|++++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus       230 ----l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          230 ----LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             ----CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             ----CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence                2357788888888887777778888888888888888887777777888888888888887763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=2.6e-26  Score=258.75  Aligned_cols=250  Identities=23%  Similarity=0.227  Sum_probs=208.3

Q ss_pred             cCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECC
Q 044158          454 NLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMP  533 (892)
Q Consensus       454 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~  533 (892)
                      ....++.++..++. +|..+  .++++.|+|++|.+.+..+..|.++++|++|+|++|++++..+..|..+++|+.|+|+
T Consensus        55 ~~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            35678888888774 44443  3689999999999998888889999999999999999998888889999999999999


Q ss_pred             CCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCC-hhhhcCCCCCEEecccccccc
Q 044158          534 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP-NWMGRLSQLRYLILANNNFEG  612 (892)
Q Consensus       534 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~  612 (892)
                      +|++++..+..|..+++|++|++++|+++.+ .+..|..+++|++|++++|...+.++ ..+.++++|++|++++|++++
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCccee-CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence            9999977777788999999999999999863 35578889999999999854443444 578889999999999999985


Q ss_pred             cCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeeccccccc
Q 044158          613 EVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTY  692 (892)
Q Consensus       613 ~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  692 (892)
                       +| .+..+++|+.|+|++|++++..|..+..                                                
T Consensus       211 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------  240 (452)
T 3zyi_A          211 -MP-NLTPLVGLEELEMSGNHFPEIRPGSFHG------------------------------------------------  240 (452)
T ss_dssp             -CC-CCTTCTTCCEEECTTSCCSEECGGGGTT------------------------------------------------
T ss_pred             -cc-cccccccccEEECcCCcCcccCcccccC------------------------------------------------
Confidence             44 4788899999999999998766655543                                                


Q ss_pred             CCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCccc
Q 044158          693 KGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGK  761 (892)
Q Consensus       693 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~  761 (892)
                          +++|+.|++++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+...
T Consensus       241 ----l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          241 ----LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             ----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             ----ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence                33688899999999988888899999999999999999988888888999999999999988743

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.1e-26  Score=244.98  Aligned_cols=224  Identities=25%  Similarity=0.254  Sum_probs=126.1

Q ss_pred             cEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEcc
Q 044158          382 IALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS  461 (892)
Q Consensus       382 ~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~  461 (892)
                      +.++.+++.++ .+|..+   .++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+.++++|++|+++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence            45555555555 555433   456677777777766655566666666666666666666 3322333455566666666


Q ss_pred             CCc-ccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCC
Q 044158          462 NNS-LQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGP  540 (892)
Q Consensus       462 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~  540 (892)
                      +|. +....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence            664 5544455555566666666666666555555555666666666666666555444555555555555555555544


Q ss_pred             CcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccccccc
Q 044158          541 IPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE  611 (892)
Q Consensus       541 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  611 (892)
                      .+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             CHHHhcCccccCEEECCCCcccc-cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            44445555555555555555554 22444555555555555555555444444555555555555555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=5.8e-28  Score=258.41  Aligned_cols=265  Identities=22%  Similarity=0.221  Sum_probs=171.0

Q ss_pred             EEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCC
Q 044158          432 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDN  511 (892)
Q Consensus       432 ~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n  511 (892)
                      ..+++.+.+. ..+..++..+++|++|++++|.+++..+..+..+++|++|++++|++++..+  +..+++|++|++++|
T Consensus        14 i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           14 IEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN   90 (317)
T ss_dssp             EESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred             Eeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence            3344444443 3333343344445555555555544444444444445555555444443222  444444444444444


Q ss_pred             cCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCC
Q 044158          512 DISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP  591 (892)
Q Consensus       512 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p  591 (892)
                                              .+++..     ..++|++|++++|++++..    ...+++|++|++++|++++..+
T Consensus        91 ------------------------~l~~l~-----~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~l~~~~~  137 (317)
T 3o53_A           91 ------------------------YVQELL-----VGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRD  137 (317)
T ss_dssp             ------------------------EEEEEE-----ECTTCCEEECCSSCCSEEE----ECCCSSCEEEECCSSCCCSGGG
T ss_pred             ------------------------cccccc-----CCCCcCEEECCCCccCCcC----ccccCCCCEEECCCCCCCCccc
Confidence                                    443211     2256666666666666522    1234667777777777776666


Q ss_pred             hhhhcCCCCCEEecccccccccCCcccc-CCCCCCEEEcCCCcCCCCCCccccCCccccccccccccccccccccccccc
Q 044158          592 NWMGRLSQLRYLILANNNFEGEVPLRLC-QLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYN  670 (892)
Q Consensus       592 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  670 (892)
                      ..++.+++|++|++++|++++..+..+. .+++|++|++++|++++. |..                             
T Consensus       138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~-----------------------------  187 (317)
T 3o53_A          138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQ-----------------------------  187 (317)
T ss_dssp             BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECC-----------------------------
T ss_pred             hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccc-----------------------------
Confidence            6677777777777877777766666553 677888888888877632 110                             


Q ss_pred             CCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCE
Q 044158          671 VGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVES  750 (892)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  750 (892)
                                              ..+++|+.|++++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.
T Consensus       188 ------------------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~  241 (317)
T 3o53_A          188 ------------------------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH  241 (317)
T ss_dssp             ------------------------CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCE
T ss_pred             ------------------------cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCE
Confidence                                    013468888888888885 4556889999999999999999 57888999999999


Q ss_pred             EECCCCcCc-ccCCccccCCCCCCEEEcc-CCcccccCCc
Q 044158          751 LDLSYNNLT-GKIPPRLVELNALAVFTVA-HNNLSGKIPE  788 (892)
Q Consensus       751 LdLs~N~l~-g~ip~~l~~l~~L~~l~ls-~N~l~g~ip~  788 (892)
                      |++++|+++ +.+|..+..++.|+.++++ .+.++|..|.
T Consensus       242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             EECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             EEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            999999999 7888889999999999998 4467776554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=9.6e-27  Score=245.30  Aligned_cols=224  Identities=23%  Similarity=0.248  Sum_probs=149.9

Q ss_pred             cEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecC
Q 044158          407 GFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDG  486 (892)
Q Consensus       407 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  486 (892)
                      +.++.+++.++ .+|..+  .++|++|++++|.++ .++...+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            56777777766 344433  357777777777776 45544445677777777777777766666777777777777777


Q ss_pred             cc-CcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCc
Q 044158          487 NH-FIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRP  565 (892)
Q Consensus       487 n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  565 (892)
                      |+ +....|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++++ 
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-  168 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-  168 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-
Confidence            76 5554466677777777777777777766666667777777777777777665555566667777777777766652 


Q ss_pred             ccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCC
Q 044158          566 LNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS  635 (892)
Q Consensus       566 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  635 (892)
                      .+..+..+++|++|++++|++++..|.++..+++|+.|++++|++++..+..+..+++|++|++++|++.
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            2334666677777777777776666666666677777777777776555555666667777777777665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=1.8e-25  Score=257.56  Aligned_cols=266  Identities=24%  Similarity=0.295  Sum_probs=150.3

Q ss_pred             CCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEe
Q 044158          404 PNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLN  483 (892)
Q Consensus       404 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  483 (892)
                      .+++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|.    .+++|++|++++|++++. |.   .+++|++|+
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC-CC---CCTTCCEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEE
Confidence            35778888888877 5565554  67778888887777 5665    356677777777766642 22   456666666


Q ss_pred             ecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCC
Q 044158          484 LDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG  563 (892)
Q Consensus       484 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  563 (892)
                      +++|++++ +|.   .+++|+.|++++|++++ +|..   +++                        |++|++++|++++
T Consensus       108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~------------------------L~~L~Ls~N~l~~  155 (622)
T 3g06_A          108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPG------------------------LQELSVSDNQLAS  155 (622)
T ss_dssp             ECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTT------------------------CCEEECCSSCCSC
T ss_pred             CcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCC------------------------CCEEECcCCcCCC
Confidence            66666654 232   34556666666666553 2221   244                        4555555554443


Q ss_pred             CcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCcccc
Q 044158          564 RPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLD  643 (892)
Q Consensus       564 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~  643 (892)
                      +  |.   .+++|+.|++++|.+++ +|   ..+++|+.|++++|++++ +|..   +++|+.|++++|.++ .+|..  
T Consensus       156 l--~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~--  219 (622)
T 3g06_A          156 L--PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL--  219 (622)
T ss_dssp             C--CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC--
T ss_pred             c--CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC--
Confidence            2  11   22445555555555543 33   234455555555555553 3321   245556666666554 22211  


Q ss_pred             CCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCC
Q 044158          644 NTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIR  723 (892)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  723 (892)
                                                                           +++|+.|++++|++++ +|   ..+++
T Consensus       220 -----------------------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~  242 (622)
T 3g06_A          220 -----------------------------------------------------PSGLKELIVSGNRLTS-LP---VLPSE  242 (622)
T ss_dssp             -----------------------------------------------------CTTCCEEECCSSCCSC-CC---CCCTT
T ss_pred             -----------------------------------------------------CCCCCEEEccCCccCc-CC---CCCCc
Confidence                                                                 1235556666666664 44   33456


Q ss_pred             CCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCcccc
Q 044158          724 IHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIA  791 (892)
Q Consensus       724 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~  791 (892)
                      |+.|+|++|+|+ .+|.   .+++|+.|+|++|+|+ .+|..+.++++|+.|++++|+++|.+|..+.
T Consensus       243 L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          243 LKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             CCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             CcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence            666666666666 3443   4566666777777666 5666666667777777777777666665433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.5e-27  Score=254.64  Aligned_cols=203  Identities=20%  Similarity=0.202  Sum_probs=100.4

Q ss_pred             CCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCccc-cccccccc-------ccCCCcEEeecCccCcCCCCccc
Q 044158          426 DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ-GQLFSKKI-------NLTKLKRLNLDGNHFIGGIPESL  497 (892)
Q Consensus       426 ~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~~~~~~~~~~  497 (892)
                      ..++|+.|++++|.+  .+|..+...   |+.|++++|.+. ..++..+.       ++++|++|++++|++++.+|..+
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            344555555555555  455544322   555555555552 23333332       46666666666666666666554


Q ss_pred             --ccCCCCcEEEccCCcCCCCccccccCC-----CCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCC-ccccc
Q 044158          498 --SNCSSLQGLYISDNDISGSIPTWMGNI-----SFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR-PLNGA  569 (892)
Q Consensus       498 --~~l~~L~~L~L~~n~l~~~~~~~~~~~-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~  569 (892)
                        ..+++|++|++++|++++. |..+..+     ++|++|++++|++++..|..|+.+++|++|++++|++.+. ..+..
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence              6666677777777666655 5544444     4555555555555554445555555555555555554431 01112


Q ss_pred             c--cCCCCccEEEccCCccCcc--CC-hhhhcCCCCCEEecccccccccCC-ccccCCCCCCEEEcCCCcC
Q 044158          570 F--SKCSYLLTLDLCNNRLNGN--IP-NWMGRLSQLRYLILANNNFEGEVP-LRLCQLQKLRLLDLSHNNF  634 (892)
Q Consensus       570 ~--~~~~~L~~L~L~~n~l~~~--~p-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l  634 (892)
                      +  ..+++|++|++++|++++.  ++ ..+..+++|++|++++|++++..| ..+..+++|++|++++|++
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l  265 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL  265 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence            2  4445555555555554421  11 122334444444444444443332 2222334444444444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=1.7e-25  Score=257.75  Aligned_cols=268  Identities=26%  Similarity=0.305  Sum_probs=188.6

Q ss_pred             CccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEE
Q 044158          380 NIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLL  459 (892)
Q Consensus       380 ~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~  459 (892)
                      +++.|++++|.++ .+|..++   ++|++|++++|.++. +|.   .+++|++|++++|+++ .+|.    .+++|++|+
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~  107 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS  107 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence            5899999999999 8887664   799999999999984 555   5789999999999998 7886    578999999


Q ss_pred             ccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccC
Q 044158          460 LSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEG  539 (892)
Q Consensus       460 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  539 (892)
                      +++|.+++...    .+++|+.|++++|++++ +|..   +++|++|++++|++++. |.   .+++|+.|++++|.+++
T Consensus       108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             ECSCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC
T ss_pred             CcCCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC
Confidence            99999997543    57899999999999985 5553   48999999999999853 32   23456666666666553


Q ss_pred             CCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCcccc
Q 044158          540 PIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLC  619 (892)
Q Consensus       540 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~  619 (892)
                       +|   ..+++|+.|++++|.+++                          +|..   +++|+.|++++|.++ .+|..  
T Consensus       176 -l~---~~~~~L~~L~Ls~N~l~~--------------------------l~~~---~~~L~~L~L~~N~l~-~l~~~--  219 (622)
T 3g06_A          176 -LP---MLPSGLQELSVSDNQLAS--------------------------LPTL---PSELYKLWAYNNRLT-SLPAL--  219 (622)
T ss_dssp             -CC---CCCTTCCEEECCSSCCSC--------------------------CCCC---CTTCCEEECCSSCCS-SCCCC--
T ss_pred             -Cc---ccCCCCcEEECCCCCCCC--------------------------CCCc---cchhhEEECcCCccc-ccCCC--
Confidence             23   233455555555555543                          2211   234555555555554 23321  


Q ss_pred             CCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCc
Q 044158          620 QLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLES  699 (892)
Q Consensus       620 ~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  699 (892)
                       +++|+.|++++|++++ +|..                                                       +++
T Consensus       220 -~~~L~~L~Ls~N~L~~-lp~~-------------------------------------------------------l~~  242 (622)
T 3g06_A          220 -PSGLKELIVSGNRLTS-LPVL-------------------------------------------------------PSE  242 (622)
T ss_dssp             -CTTCCEEECCSSCCSC-CCCC-------------------------------------------------------CTT
T ss_pred             -CCCCCEEEccCCccCc-CCCC-------------------------------------------------------CCc
Confidence             3556666666666653 3310                                                       124


Q ss_pred             cceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCC
Q 044158          700 IHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELN  770 (892)
Q Consensus       700 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~  770 (892)
                      |+.|++++|.++ .+|.   .+++|+.|+|++|+|+ .+|..+.++++|+.|+|++|.+++.+|..+..++
T Consensus       243 L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          243 LKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            666777777776 3554   4567888888888887 6677788888888888888888887777766554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=4e-27  Score=251.88  Aligned_cols=238  Identities=21%  Similarity=0.170  Sum_probs=172.0

Q ss_pred             ccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEc
Q 044158          381 IIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLL  460 (892)
Q Consensus       381 L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L  460 (892)
                      ++..+++.+.+. ..+..++..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+   +..+++|++|++
T Consensus        12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L   87 (317)
T 3o53_A           12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL   87 (317)
T ss_dssp             EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred             eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence            445666666665 4555566556788888888888888777888888888888888888874443   457888888888


Q ss_pred             cCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCC
Q 044158          461 SNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGP  540 (892)
Q Consensus       461 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~  540 (892)
                      ++|.+++..     ..++|++|++++|++.+..+.   .+++|++|++++|++++..+..+..+++|+.|++++|.+++.
T Consensus        88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            888877543     247888888888887765443   356788888888888877777777777888888888887766


Q ss_pred             Cccccc-CCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCcccc
Q 044158          541 IPSEFC-QLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLC  619 (892)
Q Consensus       541 ~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~  619 (892)
                      .+..+. .+++|++|++++|.++++  + ....+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+.
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~~--~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~  234 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYDV--K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALR  234 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEE--E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred             cHHHHhhccCcCCEEECCCCcCccc--c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhh
Confidence            666553 577788888888877753  2 23346777777777777774 3444667777777777777777 4566677


Q ss_pred             CCCCCCEEEcCCCcCC
Q 044158          620 QLQKLRLLDLSHNNFS  635 (892)
Q Consensus       620 ~l~~L~~L~Ls~N~l~  635 (892)
                      .+++|+.|++++|+++
T Consensus       235 ~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          235 FSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CCTTCCEEECTTCCCB
T ss_pred             cCCCCCEEEccCCCcc
Confidence            7777777777777766

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=5.8e-27  Score=265.19  Aligned_cols=148  Identities=22%  Similarity=0.200  Sum_probs=74.6

Q ss_pred             CCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeC
Q 044158          477 TKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDL  556 (892)
Q Consensus       477 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  556 (892)
                      ++|+.|+|++|.+.+..|..|..+++|++|+|++|.+++..|  +..+++|+.|++++|.+++..+     .++|++|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            355555555555555555555555555555555555554333  5555555555555555543221     145555555


Q ss_pred             CCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCcccc-CCCCCCEEEcCCCcCC
Q 044158          557 SKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLC-QLQKLRLLDLSHNNFS  635 (892)
Q Consensus       557 s~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~  635 (892)
                      ++|.+++.+ +   ..+++|+.|++++|.+++..|..++.+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.++
T Consensus       107 ~~N~l~~~~-~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          107 ANNNISRVS-C---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CSSCCCCEE-E---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             cCCcCCCCC-c---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            555555421 1   1234455555555555544444445555555555555555544444443 4455555555555444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2.4e-27  Score=253.02  Aligned_cols=248  Identities=22%  Similarity=0.191  Sum_probs=190.2

Q ss_pred             CCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCC-ccCchhcc-------CCCCCcEEECcCCcCccccchhHh
Q 044158          378 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFN-GSIPSSFG-------DMNSLIYLDLSNNQLTGEIPEHLA  449 (892)
Q Consensus       378 ~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~i~~~~~  449 (892)
                      .++|+.|++++|.+  .+|..+...   |+.|++++|.+. ..+|..+.       ++++|++|++++|++++.+|..++
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            34566777777777  667666552   777788887773 34555554       677888888888888777777653


Q ss_pred             -hcCccCcEEEccCCccccccccccccc-----CCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCC--ccccc
Q 044158          450 -MGCFNLEYLLLSNNSLQGQLFSKKINL-----TKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGS--IPTWM  521 (892)
Q Consensus       450 -~~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~  521 (892)
                       ..+++|++|++++|++++. |..+..+     ++|++|++++|++.+..|..|..+++|++|++++|++.+.  .+..+
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence             5677888888888888776 6666666     8888888888888877778888888888888888887654  23334


Q ss_pred             --cCCCCCcEEECCCCcccC--CCc-ccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhc
Q 044158          522 --GNISFLDAIIMPDNHLEG--PIP-SEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGR  596 (892)
Q Consensus       522 --~~~~~L~~L~L~~n~l~~--~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~  596 (892)
                        ..+++|++|++++|++++  .++ ..+..+++|++|++++|++++......+..+++|++|++++|+++ .+|..+. 
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-  273 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-  273 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence              788889999999998873  222 344678899999999999987432245667889999999999998 6777665 


Q ss_pred             CCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCC
Q 044158          597 LSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSG  636 (892)
Q Consensus       597 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g  636 (892)
                       ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence             8899999999999865 65 8899999999999999875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=2e-29  Score=296.06  Aligned_cols=243  Identities=19%  Similarity=0.171  Sum_probs=138.2

Q ss_pred             CCcccceeEecCCCCcEEEEEcCCCccccccccCcccCCCCCCCcEEeCCCCccCCcccc--c--------ccc-ccCCC
Q 044158            8 DCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVEN--E--------GLE-KLSGL   76 (892)
Q Consensus         8 ~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~s~f~~~~~L~~L~Ls~n~i~~~~~~--~--------~~~-~~~~l   76 (892)
                      -|++|.++..    .....+++......    .....+..+++|++|+++++........  .        .+. ....+
T Consensus        33 vck~W~~~~~----~~~~~l~~~~~~~~----~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~  104 (594)
T 2p1m_B           33 VCKSWYEIER----WCRRKVFIGNCYAV----SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSY  104 (594)
T ss_dssp             SCHHHHHHHH----HHCCEEEESSTTSS----CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHC
T ss_pred             HHHHHHHhhh----hhceEEeecccccc----CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhC
Confidence            4678999832    23445566533111    1234567789999999998753211100  0        001 12367


Q ss_pred             CCCCEEeCCCCCCCCccccccc-CCCCCCEEecCCc-ccccCCChhhhcCCCCCCEEeCCCCCCCCccc---cccccCCC
Q 044158           77 SNLKFLDLSHNSFNNSVLSSLA-GLSSLKNLSLAYN-RLEGSINIEELDSLSNLEGLDMSDNEIDNLVV---PKDYRGLR  151 (892)
Q Consensus        77 ~~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~Ls~n-~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~---~~~~~~l~  151 (892)
                      ++|++|+|++|.+++..+..+. .+++|++|++++| .++.......+.++++|++|++++|.+++..+   ......++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            8899999999888877666675 6889999999888 44321112234578888888888888765432   22234667


Q ss_pred             CCcEEeCCCCc--CCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCc-------CccCcccc
Q 044158          152 KLRFLDLSGLR--IRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHND-------FIGSLPWC  222 (892)
Q Consensus       152 ~L~~L~L~~n~--i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~~~  222 (892)
                      +|++|+++++.  +... .+...+..+++|++|++++|...+..+.  .+..+++|++|+++.+.       +.+ ++..
T Consensus       185 ~L~~L~l~~~~~~~~~~-~l~~l~~~~~~L~~L~L~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~  260 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFS-ALERLVTRCPNLKSLKLNRAVPLEKLAT--LLQRAPQLEELGTGGYTAEVRPDVYSG-LSVA  260 (594)
T ss_dssp             CCCEEECTTCCSCCCHH-HHHHHHHHCTTCCEEECCTTSCHHHHHH--HHHHCTTCSEEECSBCCCCCCHHHHHH-HHHH
T ss_pred             cCcEEEecccCCcCCHH-HHHHHHHhCCCCcEEecCCCCcHHHHHH--HHhcCCcceEcccccccCccchhhHHH-HHHH
Confidence            88888888776  2111 1222234567777777777732222222  45566777777755442       222 2335


Q ss_pred             ccCCCCCcEE-eCCCCCcccccCCCcccccccCcEEeccCccc
Q 044158          223 LANLTSLRVL-HVPDNQLTENLSSSPLMHLTSIELLILSNNHF  264 (892)
Q Consensus       223 l~~l~~L~~L-~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l  264 (892)
                      +.++++|+.| .+.+... +.+ +..+..+++|++|++++|.+
T Consensus       261 l~~~~~L~~Ls~~~~~~~-~~l-~~~~~~~~~L~~L~L~~~~l  301 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVP-AYL-PAVYSVCSRLTTLNLSYATV  301 (594)
T ss_dssp             HHTCTTCCEEECCBTCCG-GGG-GGGHHHHTTCCEEECTTCCC
T ss_pred             HhcCCCcccccCCcccch-hhH-HHHHHhhCCCCEEEccCCCC
Confidence            6666777766 3332221 111 22233456666666666653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=4e-28  Score=284.90  Aligned_cols=407  Identities=16%  Similarity=0.114  Sum_probs=267.7

Q ss_pred             cccCCCCccEEEccCCcCccccc--------------hhhhhcCCCCCEEEccCCcCcCCCCCCCC-CCCCccEEEccCC
Q 044158          325 FLYHQHHLEFVIISDVNMRGEFP--------------SWLLENNTNLRSIILANNSLSGPFRLPTR-SRKNIIALDISYN  389 (892)
Q Consensus       325 ~l~~~~~L~~L~l~~~~~~~~~p--------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~l~~n  389 (892)
                      .+..+++|++|+++++.....+.              ..+...+++|++|++++|.+++.....+. .+++|++|++++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            34456677777777765332221              22345678888888888877654333333 5778888888888


Q ss_pred             -cCCCCCchhhhhcCCCCcEEECcCCcCCccCchhcc----CCCCCcEEECcCCc--CccccchhHhhcCccCcEEEccC
Q 044158          390 -KLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFG----DMNSLIYLDLSNNQ--LTGEIPEHLAMGCFNLEYLLLSN  462 (892)
Q Consensus       390 -~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~----~l~~L~~L~L~~n~--l~~~i~~~~~~~~~~L~~L~L~~  462 (892)
                       .+++.....+...+++|++|++++|.+++..+..+.    .+++|++|++++|.  +.......+...+++|++|++++
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~  220 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR  220 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence             454322333444588999999999887765544443    66789999999886  32222223334578899999988


Q ss_pred             CcccccccccccccCCCcEEeecCcc-------CcCCCCcccccCCCCcEE-EccCCcCCCCccccccCCCCCcEEECCC
Q 044158          463 NSLQGQLFSKKINLTKLKRLNLDGNH-------FIGGIPESLSNCSSLQGL-YISDNDISGSIPTWMGNISFLDAIIMPD  534 (892)
Q Consensus       463 n~l~~~~~~~~~~l~~L~~L~L~~n~-------~~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~~~~L~~L~L~~  534 (892)
                      |...+.++..+..+++|+.|++..+.       +.+ ++..+.++++|+.| .+.+... +.++..+..+++|+.|++++
T Consensus       221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~  298 (594)
T 2p1m_B          221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSY  298 (594)
T ss_dssp             TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTT
T ss_pred             CCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccC
Confidence            83333367777888899999866543       222 33467888888888 4443322 23455555778899999999


Q ss_pred             CcccCCCcc-cccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccC---------CccCccCChhh-hcCCCCCEE
Q 044158          535 NHLEGPIPS-EFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCN---------NRLNGNIPNWM-GRLSQLRYL  603 (892)
Q Consensus       535 n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~---------n~l~~~~p~~~-~~l~~L~~L  603 (892)
                      |.+++.... .+..+++|++|++++| ++...++.....+++|++|++++         +.+++.....+ ..+++|+.|
T Consensus       299 ~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L  377 (594)
T 2p1m_B          299 ATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV  377 (594)
T ss_dssp             CCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHH
Confidence            887643322 3567889999999888 44323333444688899998843         44543333333 348899999


Q ss_pred             ecccccccccCCcccc-CCCCCCEEEcC--C----CcCCCCCCc--cccCCcccccccccccccccccccccccccCCCC
Q 044158          604 ILANNNFEGEVPLRLC-QLQKLRLLDLS--H----NNFSGQIPP--CLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPS  674 (892)
Q Consensus       604 ~L~~n~l~~~~~~~~~-~l~~L~~L~Ls--~----N~l~g~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  674 (892)
                      .++.|.+++..+..+. .+++|+.|+++  +    |.+++ .|.  .+...                             
T Consensus       378 ~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~~~l-----------------------------  427 (594)
T 2p1m_B          378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL-EPLDIGFGAI-----------------------------  427 (594)
T ss_dssp             EEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC-CCTHHHHHHH-----------------------------
T ss_pred             HHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC-CchhhHHHHH-----------------------------
Confidence            8888888876655555 58889999998  3    33331 110  00000                             


Q ss_pred             CCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccc-cCCCCEEEccCccCCccccccc-cCCCCCCEEE
Q 044158          675 MGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGE-LIRIHTLNLSRNNLTGTIPVTF-SNLRQVESLD  752 (892)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~Ld  752 (892)
                                         ...+++|+.|++++ .+++..+..++. +++|+.|+|++|.+++..+..+ ..+++|+.|+
T Consensus       428 -------------------~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~  487 (594)
T 2p1m_B          428 -------------------VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE  487 (594)
T ss_dssp             -------------------HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred             -------------------HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence                               01234688899977 777666666665 7889999999999887666555 5688999999


Q ss_pred             CCCCcCcccCCc-cccCCCCCCEEEccCCcccc
Q 044158          753 LSYNNLTGKIPP-RLVELNALAVFTVAHNNLSG  784 (892)
Q Consensus       753 Ls~N~l~g~ip~-~l~~l~~L~~l~ls~N~l~g  784 (892)
                      |++|.+++..+. ....+++|+.|++++|+++.
T Consensus       488 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          488 IRDCPFGDKALLANASKLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             EESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred             CcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence            999998755443 33457889999999998743

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2.6e-26  Score=259.83  Aligned_cols=246  Identities=21%  Similarity=0.193  Sum_probs=161.9

Q ss_pred             CCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEE
Q 044158          500 CSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTL  579 (892)
Q Consensus       500 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L  579 (892)
                      +++|++|+|++|.+++..|..+..+++|+.|+|++|.+++..|  +..+++|++|+|++|.+++++      ..++|++|
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~------~~~~L~~L  104 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL------VGPSIETL  104 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE------ECTTCCEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC------CCCCcCEE
Confidence            3467777777777777666777777777777777777766544  677777777777777776522      22677777


Q ss_pred             EccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccc
Q 044158          580 DLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPT  659 (892)
Q Consensus       580 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~  659 (892)
                      ++++|.+++..+.   .+++|+.|++++|.+++..|..+..+++|++|+|++|++++.+|..+..               
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~---------------  166 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA---------------  166 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG---------------
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh---------------
Confidence            7777777765443   3467777777777777766777777777777777777777655544321               


Q ss_pred             cccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCcccc
Q 044158          660 YRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIP  739 (892)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  739 (892)
                                                          .++.|+.|+|++|.+++..+  ...+++|+.|+|++|.+++.+|
T Consensus       167 ------------------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~  208 (487)
T 3oja_A          167 ------------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP  208 (487)
T ss_dssp             ------------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG
T ss_pred             ------------------------------------hCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH
Confidence                                                12357777777777775522  3346777777777777775444


Q ss_pred             ccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCccc-ccCCccccccCCCCcccc-------cCCCCCCCCC
Q 044158          740 VTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS-GKIPERIAQFATFDEDSY-------EGNPFLCGPP  811 (892)
Q Consensus       740 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~-g~ip~~~~~~~~~~~~~~-------~gN~~lc~~~  811 (892)
                       .++.+++|+.|||++|++++ +|..+..++.|+.|++++|++. +.+|..+..+..+.....       .+|++.|.++
T Consensus       209 -~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~  286 (487)
T 3oja_A          209 -EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP  286 (487)
T ss_dssp             -GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred             -hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence             47777777777777777774 5666777777777777777776 444443333333322222       2677777664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=4.8e-24  Score=223.45  Aligned_cols=209  Identities=24%  Similarity=0.289  Sum_probs=133.6

Q ss_pred             CCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEec
Q 044158          526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLIL  605 (892)
Q Consensus       526 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  605 (892)
                      ++++|++++|++++..+..|.++++|++|++++|++++ ..+..|..+++|++|++++|++++..+..+.++++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc-cCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            34444444444444444445555555555555555554 22334555566666666666666555555666666666666


Q ss_pred             ccccccccCCccccCCCCCCEEEcCCCcCCC-CCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEee
Q 044158          606 ANNNFEGEVPLRLCQLQKLRLLDLSHNNFSG-QIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFT  684 (892)
Q Consensus       606 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (892)
                      ++|++.+..+..+..+++|++|++++|++++ .+|..+..                                        
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~----------------------------------------  147 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN----------------------------------------  147 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG----------------------------------------
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc----------------------------------------
Confidence            6666665555456666666666666666654 23443332                                        


Q ss_pred             ecccccccCCCCcCccceeeccCccccccCCccccccCCCC----EEEccCccCCccccccccCCCCCCEEECCCCcCcc
Q 044158          685 TKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIH----TLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG  760 (892)
Q Consensus       685 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g  760 (892)
                                  +++|+.|++++|++++..+..+..+.+|+    .|++++|++++..+..+.. .+|+.|++++|++++
T Consensus       148 ------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~  214 (276)
T 2z62_A          148 ------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKS  214 (276)
T ss_dssp             ------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSC
T ss_pred             ------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceee
Confidence                        22466677777777666666666666666    7888888888666555544 478999999999987


Q ss_pred             cCCccccCCCCCCEEEccCCcccccCCc
Q 044158          761 KIPPRLVELNALAVFTVAHNNLSGKIPE  788 (892)
Q Consensus       761 ~ip~~l~~l~~L~~l~ls~N~l~g~ip~  788 (892)
                      ..+..+..+++|+.|++++|++++..|.
T Consensus       215 ~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          215 VPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             CCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             cCHhHhcccccccEEEccCCcccccCCc
Confidence            7666778889999999999999888775

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=3.5e-23  Score=215.80  Aligned_cols=218  Identities=22%  Similarity=0.364  Sum_probs=112.2

Q ss_pred             CCCcccceeEecCCCCcEEEEEcCCCccccccccCcccCCCCCCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCC
Q 044158            7 SDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSH   86 (892)
Q Consensus         7 ~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~s~f~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~   86 (892)
                      .|+|.|.|+.|.- .+.++.++++++.+..   ++...   .+++++|+|++|.+++...    ..|.++++|++|+|++
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~---ip~~~---~~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~   70 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTA---IPSNI---PADTKKLDLQSNKLSSLPS----KAFHRLTKLRLLYLND   70 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTSCCSS---CCSCC---CTTCSEEECCSSCCSCCCT----TSSSSCTTCCEEECCS
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCCCCCc---cCCCC---CCCCCEEECcCCCCCeeCH----HHhcCCCCCCEEECCC
Confidence            4799999999964 2345566776654432   11111   1345555555555554332    2345555555555555


Q ss_pred             CCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCC
Q 044158           87 NSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDG  166 (892)
Q Consensus        87 n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~  166 (892)
                      |.++...+..|.++++|++|++++|.+. .++...+..+++|++|++++|.+++.. +..|.++++|++|++++|.++. 
T Consensus        71 n~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~-  147 (270)
T 2o6q_A           71 NKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLP-PRVFDSLTKLTYLSLGYNELQS-  147 (270)
T ss_dssp             SCCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCC-
T ss_pred             CccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeC-HHHhCcCcCCCEEECCCCcCCc-
Confidence            5555444444455555555555555554 344434455555555555555555443 2224455555555555554443 


Q ss_pred             ccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCccCccccccCCCCCcEEeCCCCCcccccCCC
Q 044158          167 SKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSS  246 (892)
Q Consensus       167 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  246 (892)
                                               ..+.  .+..+++|++|++++|.+++..+..+.++++|++|++++|++++ +.+.
T Consensus       148 -------------------------~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~  199 (270)
T 2o6q_A          148 -------------------------LPKG--VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEG  199 (270)
T ss_dssp             -------------------------CCTT--TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCTT
T ss_pred             -------------------------cCHh--HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCHH
Confidence                                     3222  34445555555555555554444445555555555555555543 2233


Q ss_pred             cccccccCcEEeccCccccC
Q 044158          247 PLMHLTSIELLILSNNHFQI  266 (892)
Q Consensus       247 ~l~~l~~L~~L~L~~n~l~~  266 (892)
                      .+..+++|+.|++++|.+.+
T Consensus       200 ~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          200 AFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TTTTCTTCCEEECCSSCBCC
T ss_pred             HhccccCCCEEEecCCCeeC
Confidence            44555555555555555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=2.6e-23  Score=218.42  Aligned_cols=205  Identities=23%  Similarity=0.245  Sum_probs=120.1

Q ss_pred             ccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCC
Q 044158          521 MGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQL  600 (892)
Q Consensus       521 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L  600 (892)
                      +.++++++.++++++.++ .+|..+.  ++++.|++++|.+++ ..+..|..+++|++|++++|.+++..+.  +.+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence            445566666666666666 3444332  456666666666665 2345566666666666666666643332  456666


Q ss_pred             CEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcce
Q 044158          601 RYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKET  680 (892)
Q Consensus       601 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  680 (892)
                      ++|++++|+++ .+|..+..+++|++|++++|++++..|..+..                                    
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~------------------------------------  122 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG------------------------------------  122 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT------------------------------------
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC------------------------------------
Confidence            66666666665 45555666666666666666665333333322                                    


Q ss_pred             eEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcc
Q 044158          681 IDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG  760 (892)
Q Consensus       681 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g  760 (892)
                                      +++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ 
T Consensus       123 ----------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-  185 (290)
T 1p9a_G          123 ----------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-  185 (290)
T ss_dssp             ----------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             ----------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence                            224566666666666555555566666666666666666544445556666666666666666 


Q ss_pred             cCCccccCCCCCCEEEccCCccccc
Q 044158          761 KIPPRLVELNALAVFTVAHNNLSGK  785 (892)
Q Consensus       761 ~ip~~l~~l~~L~~l~ls~N~l~g~  785 (892)
                      .+|..+.....|+.+++++|++.+.
T Consensus       186 ~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          186 TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ccChhhcccccCCeEEeCCCCccCc
Confidence            5555555556666666666666543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=6.6e-23  Score=213.73  Aligned_cols=207  Identities=23%  Similarity=0.265  Sum_probs=167.7

Q ss_pred             CCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEec
Q 044158          526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLIL  605 (892)
Q Consensus       526 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  605 (892)
                      ..+.+++++++++ .+|..+.  +++++|++++|++++++ +..|.++++|++|++++|+++...+..+..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            4678999999988 4665554  57899999999988733 557888999999999999998666667788899999999


Q ss_pred             ccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeee
Q 044158          606 ANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTT  685 (892)
Q Consensus       606 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (892)
                      ++|++++..+..+..+++|++|++++|++++..|..+..                                         
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------------------------------  131 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-----------------------------------------  131 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-----------------------------------------
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-----------------------------------------
Confidence            999998766677788899999999999888554443332                                         


Q ss_pred             cccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCcc
Q 044158          686 KERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPR  765 (892)
Q Consensus       686 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~  765 (892)
                                 +++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..
T Consensus       132 -----------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  200 (270)
T 2o6q_A          132 -----------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA  200 (270)
T ss_dssp             -----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             -----------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence                       336888999999988766666888899999999999998877777888899999999999998776777


Q ss_pred             ccCCCCCCEEEccCCcccccCCc
Q 044158          766 LVELNALAVFTVAHNNLSGKIPE  788 (892)
Q Consensus       766 l~~l~~L~~l~ls~N~l~g~ip~  788 (892)
                      +..+++|+.|++++|++.+..+.
T Consensus       201 ~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          201 FDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             TTTCTTCCEEECCSSCBCCSSSS
T ss_pred             hccccCCCEEEecCCCeeCCCcc
Confidence            88888899999999988876653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=3.5e-23  Score=216.81  Aligned_cols=228  Identities=21%  Similarity=0.227  Sum_probs=126.5

Q ss_pred             EEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCC
Q 044158          384 LDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN  463 (892)
Q Consensus       384 L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n  463 (892)
                      ++..+..++ .+|..+   .++|++|++++|.+++..+..|.++++|++|++++|+++ .++...+.++++|++|++++|
T Consensus        12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred             EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence            344444444 555543   346777777777777666656777777777777777766 444444455666666666666


Q ss_pred             cccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCC-ccccccCCCCCcEEECCCCcccCCCc
Q 044158          464 SLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGS-IPTWMGNISFLDAIIMPDNHLEGPIP  542 (892)
Q Consensus       464 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~  542 (892)
                      .+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++++. +|..+..+++|+.|++++|++++..+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            66655555556666666666666665554444555555666666665555542 34444444444444444444444333


Q ss_pred             ccccCCCCCcEEeCCCCccCCCcccccccCCCCcc-EEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCC
Q 044158          543 SEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLL-TLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQL  621 (892)
Q Consensus       543 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  621 (892)
                      ..+..+++|+                      .|. +|++++|++++..+..+. ..+|+.|++++|++++..+..+..+
T Consensus       167 ~~~~~l~~L~----------------------~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l  223 (276)
T 2z62_A          167 TDLRVLHQMP----------------------LLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRL  223 (276)
T ss_dssp             GGGHHHHTCT----------------------TCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTC
T ss_pred             HHhhhhhhcc----------------------ccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhccc
Confidence            3333332222                      111 556666665544333332 2356666666666665444445666


Q ss_pred             CCCCEEEcCCCcCCCCCC
Q 044158          622 QKLRLLDLSHNNFSGQIP  639 (892)
Q Consensus       622 ~~L~~L~Ls~N~l~g~~p  639 (892)
                      ++|+.|++++|++++..|
T Consensus       224 ~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          224 TSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CSCCEEECCSSCBCCCTT
T ss_pred             ccccEEEccCCcccccCC
Confidence            666666666666665443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=2.8e-23  Score=216.71  Aligned_cols=186  Identities=23%  Similarity=0.274  Sum_probs=139.8

Q ss_pred             ccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCC
Q 044158          545 FCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKL  624 (892)
Q Consensus       545 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  624 (892)
                      +..+++|++|++++|.++++   ..+..+++|++|++++|.+++..+..++.+++|++|++++|++++..+..+..+++|
T Consensus        59 l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  135 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDI---SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL  135 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCC---GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             cccCCCCcEEECCCCCCCCc---hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC
Confidence            45566666666666666652   256666777777777777776666666777777777777777776666667777777


Q ss_pred             CEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceee
Q 044158          625 RLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLD  704 (892)
Q Consensus       625 ~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  704 (892)
                      ++|++++|++++..|..+..                                                    +++|+.|+
T Consensus       136 ~~L~L~~n~l~~~~~~~~~~----------------------------------------------------l~~L~~L~  163 (272)
T 3rfs_A          136 TYLNLAHNQLQSLPKGVFDK----------------------------------------------------LTNLTELD  163 (272)
T ss_dssp             CEEECCSSCCCCCCTTTTTT----------------------------------------------------CTTCCEEE
T ss_pred             CEEECCCCccCccCHHHhcc----------------------------------------------------CccCCEEE
Confidence            77777777777444433322                                                    23577788


Q ss_pred             ccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccc
Q 044158          705 LSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSG  784 (892)
Q Consensus       705 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g  784 (892)
                      +++|++++..|..++.+++|+.|++++|++++.+|..++.+++|+.|++++|.+++..|       .|+.++++.|.++|
T Consensus       164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g  236 (272)
T 3rfs_A          164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSG  236 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGG
T ss_pred             CCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCC
Confidence            88888887777778889999999999999999888889999999999999999987654       68899999999999


Q ss_pred             cCCccccc
Q 044158          785 KIPERIAQ  792 (892)
Q Consensus       785 ~ip~~~~~  792 (892)
                      .+|..++.
T Consensus       237 ~ip~~~~~  244 (272)
T 3rfs_A          237 VVRNSAGS  244 (272)
T ss_dssp             GBBCTTSC
T ss_pred             cccCcccc
Confidence            99985443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=5.5e-23  Score=214.47  Aligned_cols=225  Identities=22%  Similarity=0.268  Sum_probs=122.7

Q ss_pred             CCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEee
Q 044158          405 NLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNL  484 (892)
Q Consensus       405 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  484 (892)
                      .+..+++..+.+.+.  ..+..+++|+.|++++|.+. .++.  +..+++|++|++++|.+++.  ..+..+++|++|++
T Consensus        20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L   92 (272)
T 3rfs_A           20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL   92 (272)
T ss_dssp             HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred             HHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence            444555556555433  23445667777777777665 4443  23466666666666666542  34555666666666


Q ss_pred             cCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCC
Q 044158          485 DGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR  564 (892)
Q Consensus       485 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  564 (892)
                      ++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++ 
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-  171 (272)
T 3rfs_A           93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-  171 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred             CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-
Confidence            6666665555555566666666666666655555555555555555555555554444445555555555555555554 


Q ss_pred             cccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccC
Q 044158          565 PLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDN  644 (892)
Q Consensus       565 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~  644 (892)
                      ..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+.       +++|+.++++.|+++|.+|.+++.
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred             cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccc
Confidence            2233345555555555555555554444455555555555555554422       334455555555555555544443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=5.3e-22  Score=208.50  Aligned_cols=203  Identities=23%  Similarity=0.227  Sum_probs=156.3

Q ss_pred             ccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCC
Q 044158          424 FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSL  503 (892)
Q Consensus       424 ~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  503 (892)
                      ++++++++++++++++++ .+|..+   .++++.|++++|.+++..+..|..+++|+.|++++|.+++..+  ...+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence            455666777777777666 566544   2467777777777776666777777777777777777765332  2667788


Q ss_pred             cEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccC
Q 044158          504 QGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCN  583 (892)
Q Consensus       504 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~  583 (892)
                      ++|++++|+++ .+|..+..+++|+.|++++|++++..+..|..+++|++|++++|+++++ .+..|..+++|+.|++++
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~  157 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLAN  157 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCC
Confidence            88888888877 5666777788888888888888877777788888888888888888873 356678888999999999


Q ss_pred             CccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCC
Q 044158          584 NRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS  635 (892)
Q Consensus       584 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  635 (892)
                      |++++..+..+..+++|++|++++|+++ .+|..+...++|+.|+|++|++.
T Consensus       158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            9988666667788899999999999998 67888888889999999999886

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.7e-23  Score=228.22  Aligned_cols=20  Identities=5%  Similarity=0.174  Sum_probs=10.1

Q ss_pred             ccccCCCCEEEccCccCCcc
Q 044158          718 IGELIRIHTLNLSRNNLTGT  737 (892)
Q Consensus       718 ~~~l~~L~~L~Ls~N~l~~~  737 (892)
                      +..+++|+.||+++|++.+.
T Consensus       280 ~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          280 FPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             STTCCEEEEECTTSCBCCGG
T ss_pred             hccCCceEEEecCCCcCCCc
Confidence            34444555555555555444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=5e-24  Score=235.00  Aligned_cols=240  Identities=20%  Similarity=0.239  Sum_probs=158.9

Q ss_pred             ccccCCCCcEEEccCCcCCCCcc----ccccCCCCCcEEECCCC---cccCCCcccc-------cCCCCCcEEeCCCCcc
Q 044158          496 SLSNCSSLQGLYISDNDISGSIP----TWMGNISFLDAIIMPDN---HLEGPIPSEF-------CQLDYLEILDLSKNNI  561 (892)
Q Consensus       496 ~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~L~~n---~l~~~~~~~~-------~~l~~L~~L~Ls~n~l  561 (892)
                      .+..+++|++|++++|.+++..+    ..+..+++|+.|+|++|   ++++.+|..+       ..+++|++|+|++|.+
T Consensus        27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            33444444444444444443211    22334444445544443   2333344333       5667777777777777


Q ss_pred             CCC---cccccccCCCCccEEEccCCccCccCChhhh----cC---------CCCCEEeccccccc-ccCC---ccccCC
Q 044158          562 AGR---PLNGAFSKCSYLLTLDLCNNRLNGNIPNWMG----RL---------SQLRYLILANNNFE-GEVP---LRLCQL  621 (892)
Q Consensus       562 ~~~---~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~----~l---------~~L~~L~L~~n~l~-~~~~---~~~~~l  621 (892)
                      ++.   .++..+..+++|++|+|++|.+++..+..+.    .+         ++|++|++++|+++ +.++   ..+..+
T Consensus       107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  186 (386)
T 2ca6_A          107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  186 (386)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence            652   2455667777778888877777644333333    33         78888888888876 3344   356677


Q ss_pred             CCCCEEEcCCCcCCC-----CCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCC
Q 044158          622 QKLRLLDLSHNNFSG-----QIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQP  696 (892)
Q Consensus       622 ~~L~~L~Ls~N~l~g-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  696 (892)
                      ++|++|++++|+++.     .+|..+.                                                    .
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~----------------------------------------------------~  214 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLEGLA----------------------------------------------------Y  214 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGG----------------------------------------------------G
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHHHhh----------------------------------------------------c
Confidence            888888888887751     1111111                                                    2


Q ss_pred             cCccceeeccCcccc----ccCCccccccCCCCEEEccCccCCcc----ccccc--cCCCCCCEEECCCCcCcc----cC
Q 044158          697 LESIHGLDLSCNKLI----GEIPSRIGELIRIHTLNLSRNNLTGT----IPVTF--SNLRQVESLDLSYNNLTG----KI  762 (892)
Q Consensus       697 l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~--~~l~~L~~LdLs~N~l~g----~i  762 (892)
                      +++|+.|+|++|.++    +.+|..+..+++|+.|+|++|.+++.    +|..+  +.+++|+.|+|++|++++    .+
T Consensus       215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l  294 (386)
T 2ca6_A          215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL  294 (386)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred             CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence            346888888888886    56788888999999999999999876    56666  348999999999999998    58


Q ss_pred             Cccc-cCCCCCCEEEccCCcccccCC
Q 044158          763 PPRL-VELNALAVFTVAHNNLSGKIP  787 (892)
Q Consensus       763 p~~l-~~l~~L~~l~ls~N~l~g~ip  787 (892)
                      |..+ .++++|++|++++|++++..|
T Consensus       295 ~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          295 KTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHhcCCCceEEEccCCcCCcchh
Confidence            8877 668999999999999998775

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=8.8e-24  Score=230.51  Aligned_cols=178  Identities=19%  Similarity=0.203  Sum_probs=109.2

Q ss_pred             EEEccCCcccccccccccccCCCcEEeecCccCcCCCC----cccccCC-CCcEEEccCCcCCCCccccccCC-----CC
Q 044158          457 YLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIP----ESLSNCS-SLQGLYISDNDISGSIPTWMGNI-----SF  526 (892)
Q Consensus       457 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~-----~~  526 (892)
                      .++++.|.+++.+|..+...++|++|++++|.+.+..+    ..+..++ +|++|++++|++++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            45677788887777766666668888888888776655    5666777 78888888887776656555543     67


Q ss_pred             CcEEECCCCcccCCCccccc----CC-CCCcEEeCCCCccCCCccccc----ccC-CCCccEEEccCCccCccC----Ch
Q 044158          527 LDAIIMPDNHLEGPIPSEFC----QL-DYLEILDLSKNNIAGRPLNGA----FSK-CSYLLTLDLCNNRLNGNI----PN  592 (892)
Q Consensus       527 L~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~Ls~n~l~~~~~~~~----~~~-~~~L~~L~L~~n~l~~~~----p~  592 (892)
                      |++|++++|.+++..+..+.    .+ ++|++|++++|++++.. +..    +.. +++|++|++++|++++..    +.
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS-SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC-HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH-HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            77777777777665555333    33 56677777777665522 212    222 346666666666666432    22


Q ss_pred             hhhcCC-CCCEEecccccccccCCcccc----CC-CCCCEEEcCCCcCC
Q 044158          593 WMGRLS-QLRYLILANNNFEGEVPLRLC----QL-QKLRLLDLSHNNFS  635 (892)
Q Consensus       593 ~~~~l~-~L~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~Ls~N~l~  635 (892)
                      .+..++ +|++|+|++|++++..+..+.    .+ ++|++|||++|+++
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            333443 666666666666554443332    22 36666666666654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.7e-22  Score=215.38  Aligned_cols=144  Identities=19%  Similarity=0.199  Sum_probs=66.4

Q ss_pred             CCCcEEeecCccCcCCCCccc--ccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEE
Q 044158          477 TKLKRLNLDGNHFIGGIPESL--SNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEIL  554 (892)
Q Consensus       477 ~~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  554 (892)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|++++..+..-                    ...+..+++|++|
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~--------------------~~~~~~~~~L~~L  150 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA--------------------ELQQWLKPGLKVL  150 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH--------------------HHHTTBCSCCCEE
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH--------------------HHHhhhccCCCEE
Confidence            445555555555555555554  555556666666665554322100                    0111223333333


Q ss_pred             eCCCCccCCCcccccccCCCCccEEEccCCccCcc---C-ChhhhcCCCCCEEecccccccccCCc----cccCCCCCCE
Q 044158          555 DLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGN---I-PNWMGRLSQLRYLILANNNFEGEVPL----RLCQLQKLRL  626 (892)
Q Consensus       555 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~---~-p~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~  626 (892)
                      ++++|++++ ..+..+..+++|++|++++|++.+.   . +.+++.+++|++|++++|+++. ++.    .+..+++|++
T Consensus       151 ~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~  228 (310)
T 4glp_A          151 SIAQAHSPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHS  228 (310)
T ss_dssp             EEECCSSCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSS
T ss_pred             EeeCCCcch-hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCE
Confidence            333333333 2223334444444444444443321   1 1123445556666666665541 222    1345566666


Q ss_pred             EEcCCCcCCCCCCccc
Q 044158          627 LDLSHNNFSGQIPPCL  642 (892)
Q Consensus       627 L~Ls~N~l~g~~p~~~  642 (892)
                      |||++|++++.+|..+
T Consensus       229 L~Ls~N~l~~~~p~~~  244 (310)
T 4glp_A          229 LDLSHNSLRATVNPSA  244 (310)
T ss_dssp             EECTTSCCCCCCCSCC
T ss_pred             EECCCCCCCccchhhH
Confidence            6666666665555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=3e-23  Score=224.43  Aligned_cols=234  Identities=18%  Similarity=0.180  Sum_probs=117.4

Q ss_pred             CCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCC-ccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEe
Q 044158          477 TKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGS-IPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILD  555 (892)
Q Consensus       477 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  555 (892)
                      ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            3444444444444443332 33445555555555554433 444444445555555555554444444555555555555


Q ss_pred             CCCC-ccCCCcccccccCCCCccEEEccCC-ccCcc-CChhhhcCC-CCCEEeccccc--cc-ccCCccccCCCCCCEEE
Q 044158          556 LSKN-NIAGRPLNGAFSKCSYLLTLDLCNN-RLNGN-IPNWMGRLS-QLRYLILANNN--FE-GEVPLRLCQLQKLRLLD  628 (892)
Q Consensus       556 Ls~n-~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~-~p~~~~~l~-~L~~L~L~~n~--l~-~~~~~~~~~l~~L~~L~  628 (892)
                      +++| .+++..++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|.  ++ +.+|..+..+++|+.|+
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            5555 3443223334445555555555555 44432 344444455 55555555552  22 22333334444444444


Q ss_pred             cCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCc
Q 044158          629 LSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCN  708 (892)
Q Consensus       629 Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N  708 (892)
                      +++|.+                                                                          
T Consensus       229 l~~~~~--------------------------------------------------------------------------  234 (336)
T 2ast_B          229 LSDSVM--------------------------------------------------------------------------  234 (336)
T ss_dssp             CTTCTT--------------------------------------------------------------------------
T ss_pred             CCCCCc--------------------------------------------------------------------------
Confidence            444431                                                                          


Q ss_pred             cccccCCccccccCCCCEEEccCcc-CCccccccccCCCCCCEEECCCCcCcccCCccccCC-CCCCEEEccCCcccccC
Q 044158          709 KLIGEIPSRIGELIRIHTLNLSRNN-LTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVEL-NALAVFTVAHNNLSGKI  786 (892)
Q Consensus       709 ~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~l~ls~N~l~g~i  786 (892)
                       +++..+..+..+++|+.|++++|. ++......++++++|+.|++++| ++..   .+..+ ..+..|++++|++++..
T Consensus       235 -l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~  309 (336)
T 2ast_B          235 -LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIA  309 (336)
T ss_dssp             -CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTT
T ss_pred             -CCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCcccc
Confidence             333444556666677777777774 22222224666777777777777 3321   23333 23566667888888877


Q ss_pred             Cccc
Q 044158          787 PERI  790 (892)
Q Consensus       787 p~~~  790 (892)
                      |...
T Consensus       310 ~~~~  313 (336)
T 2ast_B          310 RPTI  313 (336)
T ss_dssp             CSSC
T ss_pred             CCcc
Confidence            7643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=2.4e-23  Score=229.59  Aligned_cols=237  Identities=21%  Similarity=0.250  Sum_probs=150.1

Q ss_pred             CCCCcEEECcCCcCCccCch----hccCCCCCcEEECcCC---cCccccchhH------hhcCccCcEEEccCCcccc--
Q 044158          403 LPNLGFLTISFNAFNGSIPS----SFGDMNSLIYLDLSNN---QLTGEIPEHL------AMGCFNLEYLLLSNNSLQG--  467 (892)
Q Consensus       403 l~~L~~L~L~~n~~~~~~p~----~~~~l~~L~~L~L~~n---~l~~~i~~~~------~~~~~~L~~L~L~~n~l~~--  467 (892)
                      +++|++|++++|.+.+..+.    .+..+++|++|+|++|   ++.+.+|..+      +..+++|++|+|++|.+++  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            56666666666666544332    2455666666666664   3334444433      2355666666666666665  


Q ss_pred             --cccccccccCCCcEEeecCccCcCCCCcc----cccC---------CCCcEEEccCCcCC-CCcc---ccccCCCCCc
Q 044158          468 --QLFSKKINLTKLKRLNLDGNHFIGGIPES----LSNC---------SSLQGLYISDNDIS-GSIP---TWMGNISFLD  528 (892)
Q Consensus       468 --~~~~~~~~l~~L~~L~L~~n~~~~~~~~~----~~~l---------~~L~~L~L~~n~l~-~~~~---~~~~~~~~L~  528 (892)
                        .++..+..+++|++|+|++|.+....+..    +..+         ++|++|++++|+++ +.++   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence              35555666667777777777665332222    2223         67777777777766 3333   3455667777


Q ss_pred             EEECCCCcccC-----CCcccccCCCCCcEEeCCCCccCC---CcccccccCCCCccEEEccCCccCcc----CChhhhc
Q 044158          529 AIIMPDNHLEG-----PIPSEFCQLDYLEILDLSKNNIAG---RPLNGAFSKCSYLLTLDLCNNRLNGN----IPNWMGR  596 (892)
Q Consensus       529 ~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~~~~  596 (892)
                      .|++++|.++.     ..+..+..+++|++|+|++|.++.   ..++..+..+++|++|+|++|.+++.    ++..+..
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  270 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  270 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence            77777777652     233366777778888888887741   14556677778888888888887765    4555533


Q ss_pred             --CCCCCEEecccccccc----cCCccc-cCCCCCCEEEcCCCcCCCCCC
Q 044158          597 --LSQLRYLILANNNFEG----EVPLRL-CQLQKLRLLDLSHNNFSGQIP  639 (892)
Q Consensus       597 --l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~Ls~N~l~g~~p  639 (892)
                        +++|++|+|++|.+++    .+|..+ .++++|++|++++|++++..|
T Consensus       271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence              7888888888888876    366666 557888888888888875543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=3.3e-22  Score=213.04  Aligned_cols=229  Identities=20%  Similarity=0.160  Sum_probs=155.8

Q ss_pred             CCCcEEEccCCcCCCCccc---cccCCCCCcEEECCCCcccCCCcccc--cCCCCCcEEeCCCCccCCCccc----cccc
Q 044158          501 SSLQGLYISDNDISGSIPT---WMGNISFLDAIIMPDNHLEGPIPSEF--CQLDYLEILDLSKNNIAGRPLN----GAFS  571 (892)
Q Consensus       501 ~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~----~~~~  571 (892)
                      ..++.+.+.++.++.....   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++ ..+    ..+.
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-~~~~~~~~~~~  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWAT-GRSWLAELQQW  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSS-TTSSHHHHHTT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccc-hhhhhHHHHhh
Confidence            3466777777665421110   11123557777777777777777776  777888888888888775 222    2344


Q ss_pred             CCCCccEEEccCCccCccCChhhhcCCCCCEEeccccccccc--C--CccccCCCCCCEEEcCCCcCCCCCCccccCCcc
Q 044158          572 KCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGE--V--PLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSL  647 (892)
Q Consensus       572 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~  647 (892)
                      .+++|++|++++|++.+..|..++.+++|++|++++|++.+.  +  +..+..+++|++|++++|+++ .+|......  
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l--  219 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAAL--  219 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHH--
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHH--
Confidence            678888888888888877777888888888888888887642  2  223357788888888888875 111100000  


Q ss_pred             cccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCcccccc---CCC
Q 044158          648 HREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGEL---IRI  724 (892)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L  724 (892)
                                                                    ...+++|+.||+++|++++.+|..+..+   ++|
T Consensus       220 ----------------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L  253 (310)
T 4glp_A          220 ----------------------------------------------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSAL  253 (310)
T ss_dssp             ----------------------------------------------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTC
T ss_pred             ----------------------------------------------HhcCCCCCEEECCCCCCCccchhhHHhccCcCcC
Confidence                                                          0012357788888888887777777766   588


Q ss_pred             CEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccc
Q 044158          725 HTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSG  784 (892)
Q Consensus       725 ~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g  784 (892)
                      ++|+|++|+++ .+|..+.  ++|+.|||++|+|++. |. +..++.|+.|++++|+++.
T Consensus       254 ~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          254 NSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            88888888888 5676664  6888888888888853 33 5677888888888887763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.6e-21  Score=200.73  Aligned_cols=212  Identities=20%  Similarity=0.228  Sum_probs=150.7

Q ss_pred             CCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEc
Q 044158          550 YLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDL  629 (892)
Q Consensus       550 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  629 (892)
                      ..++++++++.++.  +|..+.  ++++.|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~~--~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLDS--VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCSS--CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCccc--cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            45667777777764  333332  57777777777777777777777788888888888887777777777888888888


Q ss_pred             CCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCcc
Q 044158          630 SHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNK  709 (892)
Q Consensus       630 s~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~  709 (892)
                      ++|++++..+..+..                                                    +++|+.|++++|+
T Consensus        91 ~~n~l~~~~~~~~~~----------------------------------------------------l~~L~~L~L~~N~  118 (251)
T 3m19_A           91 ANNQLASLPLGVFDH----------------------------------------------------LTQLDKLYLGGNQ  118 (251)
T ss_dssp             TTSCCCCCCTTTTTT----------------------------------------------------CTTCCEEECCSSC
T ss_pred             CCCcccccChhHhcc----------------------------------------------------cCCCCEEEcCCCc
Confidence            888877444333322                                                    2357888888888


Q ss_pred             ccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCcc
Q 044158          710 LIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPER  789 (892)
Q Consensus       710 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~  789 (892)
                      +++..+..|..+++|+.|+|++|++++..+..|+.+++|+.|||++|++++..|..+..+++|+.|++++|++++.... 
T Consensus       119 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-  197 (251)
T 3m19_A          119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE-  197 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT-
T ss_pred             CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc-
Confidence            8876666788899999999999999987777899999999999999999988888899999999999999999887444 


Q ss_pred             ccccCCC------CcccccCCCCCCCCCCCCCCCCC
Q 044158          790 IAQFATF------DEDSYEGNPFLCGPPLPKICNEN  819 (892)
Q Consensus       790 ~~~~~~~------~~~~~~gN~~lc~~~l~~~c~~~  819 (892)
                      +..+..+      ......|+. +|+.+....|...
T Consensus       198 ~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~  232 (251)
T 3m19_A          198 ILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG  232 (251)
T ss_dssp             HHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred             cHHHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence            2222111      112233443 4665656667544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=7e-23  Score=221.54  Aligned_cols=222  Identities=21%  Similarity=0.249  Sum_probs=130.2

Q ss_pred             CcEEeecCccCcCCCCcccccC--CCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeC
Q 044158          479 LKRLNLDGNHFIGGIPESLSNC--SSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDL  556 (892)
Q Consensus       479 L~~L~L~~n~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  556 (892)
                      ++.++++++.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+++.                
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~----------------  108 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS----------------  108 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH----------------
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH----------------
Confidence            555666655543   3344444  5666666666666654433 23445555555555554433                


Q ss_pred             CCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccc-ccccc-CCccccCCCCCCEEEcCCC-c
Q 044158          557 SKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANN-NFEGE-VPLRLCQLQKLRLLDLSHN-N  633 (892)
Q Consensus       557 s~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~Ls~N-~  633 (892)
                              .++..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .
T Consensus       109 --------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~  180 (336)
T 2ast_B          109 --------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD  180 (336)
T ss_dssp             --------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred             --------HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence                    13334444444555555555444444444444555555555555 34331 3333444555555555555 4


Q ss_pred             CCCC-CCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcC-ccceeeccCc--c
Q 044158          634 FSGQ-IPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLE-SIHGLDLSCN--K  709 (892)
Q Consensus       634 l~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~Ls~N--~  709 (892)
                      +++. ++..+.                                                    .++ +|+.|++++|  .
T Consensus       181 l~~~~~~~~~~----------------------------------------------------~l~~~L~~L~l~~~~~~  208 (336)
T 2ast_B          181 FTEKHVQVAVA----------------------------------------------------HVSETITQLNLSGYRKN  208 (336)
T ss_dssp             CCHHHHHHHHH----------------------------------------------------HSCTTCCEEECCSCGGG
T ss_pred             cChHHHHHHHH----------------------------------------------------hcccCCCEEEeCCCccc
Confidence            4421 111110                                                    122 3555555555  3


Q ss_pred             cc-ccCCccccccCCCCEEEccCcc-CCccccccccCCCCCCEEECCCCc-CcccCCccccCCCCCCEEEccCC
Q 044158          710 LI-GEIPSRIGELIRIHTLNLSRNN-LTGTIPVTFSNLRQVESLDLSYNN-LTGKIPPRLVELNALAVFTVAHN  780 (892)
Q Consensus       710 l~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~-l~g~ip~~l~~l~~L~~l~ls~N  780 (892)
                      ++ +.+|..+..+++|+.|++++|. +++..+..++.+++|+.|++++|. ++......+.++++|+.|++++|
T Consensus       209 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          209 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            33 3567778889999999999999 888888899999999999999996 33222236888999999999999

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1e-20  Score=200.86  Aligned_cols=58  Identities=19%  Similarity=0.324  Sum_probs=32.7

Q ss_pred             ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcc
Q 044158          699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG  760 (892)
Q Consensus       699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g  760 (892)
                      +|+.|++++|.+++..|  +..+++|+.|+|++|++++..|  +..+++|+.|++++|++++
T Consensus       174 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             TCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            34445555555543322  5556666666666666664442  5666666666666666653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=5.2e-21  Score=195.52  Aligned_cols=197  Identities=19%  Similarity=0.166  Sum_probs=114.1

Q ss_pred             CCCcEEECcCCcCCccCchhccCCCCCcEEECcCCc-CccccchhHhhcCccCcEEEccC-CcccccccccccccCCCcE
Q 044158          404 PNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQ-LTGEIPEHLAMGCFNLEYLLLSN-NSLQGQLFSKKINLTKLKR  481 (892)
Q Consensus       404 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~i~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~  481 (892)
                      ++|++|++++|++++..+..|.++++|++|++++|+ ++ .++...+.++++|++|++++ |++++..+..|.++++|++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            467777777777766655566677777777777775 55 55554455566666666665 6666555555666666666


Q ss_pred             EeecCccCcCCCCcccccCCCCc---EEEccCC-cCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCc-EEeC
Q 044158          482 LNLDGNHFIGGIPESLSNCSSLQ---GLYISDN-DISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE-ILDL  556 (892)
Q Consensus       482 L~L~~n~~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L  556 (892)
                      |++++|++++ +|. |..+++|+   +|++++| ++++..                        +..|..+++|+ +|++
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~------------------------~~~~~~l~~L~~~L~l  163 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIP------------------------VNAFQGLCNETLTLKL  163 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEEC------------------------TTTTTTTBSSEEEEEC
T ss_pred             EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcC------------------------cccccchhcceeEEEc
Confidence            6666666554 343 55555555   5555555 554333                        33444455555 5555


Q ss_pred             CCCccCCCcccccccCCCCccEEEccCCc-cCccCChhhhcC-CCCCEEecccccccccCCccccCCCCCCEEEcCCC
Q 044158          557 SKNNIAGRPLNGAFSKCSYLLTLDLCNNR-LNGNIPNWMGRL-SQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHN  632 (892)
Q Consensus       557 s~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N  632 (892)
                      ++|+++.++ +..|.. ++|+.|++++|+ +++..+..+..+ ++|+.|++++|++++ +|..  .+++|+.|+++++
T Consensus       164 ~~n~l~~i~-~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          164 YNNGFTSVQ-GYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CSCCCCEEC-TTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             CCCCCcccC-HhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence            555554311 123333 566666666663 654445556666 666666666666663 3332  4566666666655

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=6.5e-21  Score=194.78  Aligned_cols=189  Identities=17%  Similarity=0.175  Sum_probs=131.2

Q ss_pred             cCcEEEccCCcccccccccccccCCCcEEeecCcc-CcCCCCcccccCCCCcEEEccC-CcCCCCccccccCCCCCcEEE
Q 044158          454 NLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNH-FIGGIPESLSNCSSLQGLYISD-NDISGSIPTWMGNISFLDAII  531 (892)
Q Consensus       454 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~  531 (892)
                      +|++|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..+++|+.|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            45555555555555444455555666666666664 4444444566666666666665 666655555566666666666


Q ss_pred             CCCCcccCCCcccccCCCCCc---EEeCCCC-ccCCCcccccccCCCCcc-EEEccCCccCccCChhhhcCCCCCEEecc
Q 044158          532 MPDNHLEGPIPSEFCQLDYLE---ILDLSKN-NIAGRPLNGAFSKCSYLL-TLDLCNNRLNGNIPNWMGRLSQLRYLILA  606 (892)
Q Consensus       532 L~~n~l~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  606 (892)
                      +++|++++ +|. +..+++|+   +|++++| .+++++ +..|.++++|+ +|++++|+++...+..+.. ++|+.|+++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIP-VNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEEC-TTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcC-cccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence            66666664 444 67777777   9999999 888633 55789999999 9999999999443444555 899999999


Q ss_pred             ccc-ccccCCccccCC-CCCCEEEcCCCcCCCCCCccccCCc
Q 044158          607 NNN-FEGEVPLRLCQL-QKLRLLDLSHNNFSGQIPPCLDNTS  646 (892)
Q Consensus       607 ~n~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~g~~p~~~~~~~  646 (892)
                      +|+ +++..+..+..+ ++|+.|++++|++++..+..+.++.
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~  229 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLK  229 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCS
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCc
Confidence            995 997777888999 9999999999999854334444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=5.1e-20  Score=189.52  Aligned_cols=179  Identities=20%  Similarity=0.211  Sum_probs=114.9

Q ss_pred             CcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCC
Q 044158          455 LEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPD  534 (892)
Q Consensus       455 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~  534 (892)
                      .++++++++.++. +|..+.  ++++.|++++|.+.+..+..|.++++|++|++++|++++..+..+..+++|+.|++++
T Consensus        16 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           16 KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            4444555544442 222221  3555666666666555555566666666666666666665555566666666666666


Q ss_pred             CcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccC
Q 044158          535 NHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEV  614 (892)
Q Consensus       535 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  614 (892)
                      |++++..+..|..+++|++|++++|+++++ .+..|..+++|++|++++|++++..+..++.+++|++|+|++|++++..
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCc-ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            666655555666677777777777777653 2445667777777777777777666666777777777777777777666


Q ss_pred             CccccCCCCCCEEEcCCCcCCCC
Q 044158          615 PLRLCQLQKLRLLDLSHNNFSGQ  637 (892)
Q Consensus       615 ~~~~~~l~~L~~L~Ls~N~l~g~  637 (892)
                      +..+..+++|+.|++++|++++.
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCTT
T ss_pred             HHHHhCCCCCCEEEeeCCceeCC
Confidence            66777777788888888877754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=3e-20  Score=197.24  Aligned_cols=191  Identities=24%  Similarity=0.340  Sum_probs=98.9

Q ss_pred             CCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEE
Q 044158          403 LPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRL  482 (892)
Q Consensus       403 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  482 (892)
                      +++|++|++++|.+.. +| .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+++.  ..+..+++|+.|
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L  112 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence            5677777777777664 33 4666777777777777766 4444  34566666666666666543  245555666666


Q ss_pred             eecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccC
Q 044158          483 NLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIA  562 (892)
Q Consensus       483 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  562 (892)
                      ++++|++.+. + .+..+++|++|++++|++++..+  +..+++|+.|++++|.+++..+  +..+++|++|++++|+++
T Consensus       113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence            6666655542 2 25555555555555555554322  4444445555555544443221  444444444444444444


Q ss_pred             CCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccccccc
Q 044158          563 GRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE  611 (892)
Q Consensus       563 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  611 (892)
                      +++   .+..+++|++|++++|++++..+  +..+++|+.|++++|+++
T Consensus       187 ~~~---~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          187 DIS---PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCG---GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred             cCh---hhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence            321   13444444444444444443221  334444444444444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=7.5e-20  Score=198.21  Aligned_cols=242  Identities=18%  Similarity=0.102  Sum_probs=187.8

Q ss_pred             cEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcE-EEc
Q 044158          382 IALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY-LLL  460 (892)
Q Consensus       382 ~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~-L~L  460 (892)
                      ++++.++++++ .+|..+   .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+|...|.+++++.+ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45777777777 788765   4689999999999987666789999999999999999877888888888888765 666


Q ss_pred             cCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccC-CcCCCCccccccCCC-CCcEEECCCCccc
Q 044158          461 SNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISD-NDISGSIPTWMGNIS-FLDAIIMPDNHLE  538 (892)
Q Consensus       461 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~-~L~~L~L~~n~l~  538 (892)
                      +.|+++...+..|..+++|++|++++|++.+..+..+....++..|++.+ +++....+..+..+. .++.|++++|+++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            77999988889999999999999999999877666777778888999876 456655555666664 6889999999998


Q ss_pred             CCCcccccCCCCCcEEeCCC-CccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCcc
Q 044158          539 GPIPSEFCQLDYLEILDLSK-NNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLR  617 (892)
Q Consensus       539 ~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  617 (892)
                      .. |.......+|++|++++ |.++.++ +.+|.++++|++|++++|+++...+..+   .+|+.|.+.++.--..+| .
T Consensus       168 ~i-~~~~f~~~~L~~l~l~~~n~l~~i~-~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~  241 (350)
T 4ay9_X          168 EI-HNSAFNGTQLDELNLSDNNNLEELP-NDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-T  241 (350)
T ss_dssp             EE-CTTSSTTEEEEEEECTTCTTCCCCC-TTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-C
T ss_pred             CC-ChhhccccchhHHhhccCCcccCCC-HHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-C
Confidence            54 44444567899999975 6666533 4578999999999999999985444444   456666655554333666 4


Q ss_pred             ccCCCCCCEEEcCCCc
Q 044158          618 LCQLQKLRLLDLSHNN  633 (892)
Q Consensus       618 ~~~l~~L~~L~Ls~N~  633 (892)
                      +..+++|+.++++++.
T Consensus       242 l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          242 LEKLVALMEASLTYPS  257 (350)
T ss_dssp             TTTCCSCCEEECSCHH
T ss_pred             chhCcChhhCcCCCCc
Confidence            7889999999997653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=8.5e-20  Score=207.60  Aligned_cols=187  Identities=26%  Similarity=0.360  Sum_probs=110.4

Q ss_pred             CCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEc
Q 044158          502 SLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDL  581 (892)
Q Consensus       502 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L  581 (892)
                      +|+.|++++|.+++ +|..+  .++|+.|++++|.++ .+|   ..+++|++|++++|++++  +|. +..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST--LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC--cch-hhc--CCCEEEC
Confidence            78888888888876 55544  266777777777776 445   345667777777777765  333 433  6777777


Q ss_pred             cCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccc
Q 044158          582 CNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYR  661 (892)
Q Consensus       582 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~  661 (892)
                      ++|++++ +|.   .+++|+.|++++|++++ +|.   .+++|++|+|++|++++ +|. +.                  
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~------------------  179 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP------------------  179 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC------------------
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh------------------
Confidence            7777665 444   45666666666666664 443   35566666666666653 443 21                  


Q ss_pred             cccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCC-------CEEEccCccC
Q 044158          662 NEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRI-------HTLNLSRNNL  734 (892)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~N~l  734 (892)
                                                          ++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|
T Consensus       180 ------------------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l  219 (571)
T 3cvr_A          180 ------------------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRI  219 (571)
T ss_dssp             ------------------------------------TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCC
T ss_pred             ------------------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcc
Confidence                                                13555666666665 4444 433  44       5555555555


Q ss_pred             CccccccccCCCCCCEEECCCCcCcccCCccccCC
Q 044158          735 TGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVEL  769 (892)
Q Consensus       735 ~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l  769 (892)
                      + .+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus       220 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             C-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             e-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            5 345555555555555555555555555554443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=2.2e-19  Score=179.05  Aligned_cols=133  Identities=23%  Similarity=0.266  Sum_probs=67.3

Q ss_pred             CCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEc
Q 044158          502 SLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDL  581 (892)
Q Consensus       502 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L  581 (892)
                      +|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|+++++ .+..|..+++|++|++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEEEc
Confidence            445555555555444444444445555555555554444334444555555555555555542 2333455555555555


Q ss_pred             cCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCC
Q 044158          582 CNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS  635 (892)
Q Consensus       582 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  635 (892)
                      ++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            555555444444555555555555555555444444555555555555555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=1.4e-19  Score=195.99  Aligned_cols=240  Identities=19%  Similarity=0.107  Sum_probs=169.6

Q ss_pred             cEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCc-ccccCCCCCcE-EeCC
Q 044158          480 KRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIP-SEFCQLDYLEI-LDLS  557 (892)
Q Consensus       480 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~Ls  557 (892)
                      +.++.++++++ .+|..+  .+++++|+|++|+++...+..|.++++|++|+|++|++.+.+| .+|.+++++++ +.++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            56788888887 567655  3678999999999986666678889999999999998866554 46778877765 5666


Q ss_pred             CCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccc-ccccccCCccccCCC-CCCEEEcCCCcCC
Q 044158          558 KNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILAN-NNFEGEVPLRLCQLQ-KLRLLDLSHNNFS  635 (892)
Q Consensus       558 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~  635 (892)
                      +|+++.+ .+..|..+++|++|++++|++.+..+..+....++..|++.+ +++....+..+..+. .++.|++++|+++
T Consensus        89 ~N~l~~l-~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           89 ANNLLYI-NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             ETTCCEE-CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CCccccc-CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            7888763 367788888888898888888866666666667778888865 456644445565553 5788888888887


Q ss_pred             CCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccC-ccccccC
Q 044158          636 GQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSC-NKLIGEI  714 (892)
Q Consensus       636 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~  714 (892)
                       .+|.....                                                    ..+++.+++++ |.++ .+
T Consensus       168 -~i~~~~f~----------------------------------------------------~~~L~~l~l~~~n~l~-~i  193 (350)
T 4ay9_X          168 -EIHNSAFN----------------------------------------------------GTQLDELNLSDNNNLE-EL  193 (350)
T ss_dssp             -EECTTSST----------------------------------------------------TEEEEEEECTTCTTCC-CC
T ss_pred             -CCChhhcc----------------------------------------------------ccchhHHhhccCCccc-CC
Confidence             34332211                                                    12477788875 5555 55


Q ss_pred             C-ccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCc
Q 044158          715 P-SRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNN  781 (892)
Q Consensus       715 p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~  781 (892)
                      | ..|..+++|++|+|++|+|+...+..   +.+|+.|.+.++.--..+| .+.++++|+.++++++.
T Consensus       194 ~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          194 PNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             CTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             CHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence            5 45788888888888888888554444   4455556655554444677 47788888888887664

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=2.2e-19  Score=204.13  Aligned_cols=196  Identities=24%  Similarity=0.287  Sum_probs=153.6

Q ss_pred             CCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCC
Q 044158          478 KLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLS  557 (892)
Q Consensus       478 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  557 (892)
                      +|+.|++++|.+++ +|..+  .++|++|++++|+++ .+|   ..+++|+.|++++|.+++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            89999999999886 66655  378999999999988 556   457889999999999987 666 655  89999999


Q ss_pred             CCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCC
Q 044158          558 KNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQ  637 (892)
Q Consensus       558 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~  637 (892)
                      +|+++++  |.   .+++|+.|++++|++++ +|.   .+++|++|+|++|++++ +|. +.  ++|+.|+|++|+|+ .
T Consensus       129 ~N~l~~l--p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~  194 (571)
T 3cvr_A          129 NNQLTML--PE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S  194 (571)
T ss_dssp             SSCCSCC--CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred             CCcCCCC--CC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence            9999873  43   67899999999999986 565   57889999999999986 666 65  88999999999988 6


Q ss_pred             CCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCcc
Q 044158          638 IPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSR  717 (892)
Q Consensus       638 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  717 (892)
                      +|. +.. ..                                              ......|+.|+|++|.|+ .+|..
T Consensus       195 lp~-~~~-~L----------------------------------------------~~~~~~L~~L~Ls~N~l~-~lp~~  225 (571)
T 3cvr_A          195 LPA-VPV-RN----------------------------------------------HHSEETEIFFRCRENRIT-HIPEN  225 (571)
T ss_dssp             CCC-CC-------------------------------------------------------CCEEEECCSSCCC-CCCGG
T ss_pred             hhh-HHH-hh----------------------------------------------hcccccceEEecCCCcce-ecCHH
Confidence            665 332 10                                              001123588999999998 58888


Q ss_pred             ccccCCCCEEEccCccCCccccccccCCCC
Q 044158          718 IGELIRIHTLNLSRNNLTGTIPVTFSNLRQ  747 (892)
Q Consensus       718 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  747 (892)
                      +..+++|+.|+|++|.+++.+|..+..++.
T Consensus       226 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          226 ILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             GGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             HhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            888999999999999999999988877654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=2.8e-19  Score=178.26  Aligned_cols=159  Identities=24%  Similarity=0.239  Sum_probs=69.0

Q ss_pred             cCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECC
Q 044158          454 NLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMP  533 (892)
Q Consensus       454 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~  533 (892)
                      +|++|++++|++++..+..|..+++|++|++++|++.+..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            34444444444443333334444444444444444443333334444445555555444444333334444444444444


Q ss_pred             CCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccccccccc
Q 044158          534 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGE  613 (892)
Q Consensus       534 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  613 (892)
                      +|++++..+..+..+++|++|++++|+++++ .+..+..+++|++|++++|.+.+.       +++|+.|+++.|+++|.
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~  180 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGV  180 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTT
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCce
Confidence            4444433333344444444444444444431 122344444444444444433321       22344444444444444


Q ss_pred             CCccccC
Q 044158          614 VPLRLCQ  620 (892)
Q Consensus       614 ~~~~~~~  620 (892)
                      +|..++.
T Consensus       181 ip~~~~~  187 (208)
T 2o6s_A          181 VRNSAGS  187 (208)
T ss_dssp             BBCTTSS
T ss_pred             eeccCcc
Confidence            4444433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=2.6e-18  Score=172.38  Aligned_cols=90  Identities=22%  Similarity=0.221  Sum_probs=76.8

Q ss_pred             ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 044158          699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA  778 (892)
Q Consensus       699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls  778 (892)
                      +|+.|+|++|.+++..|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..+..+++|+.|+++
T Consensus        82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  161 (220)
T 2v70_A           82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL  161 (220)
T ss_dssp             TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence            46667777777776667778888899999999999998888899999999999999999998889999999999999999


Q ss_pred             CCcccccCCc
Q 044158          779 HNNLSGKIPE  788 (892)
Q Consensus       779 ~N~l~g~ip~  788 (892)
                      +|++++..+-
T Consensus       162 ~N~l~c~c~l  171 (220)
T 2v70_A          162 ANPFNCNCYL  171 (220)
T ss_dssp             SCCEECSGGG
T ss_pred             CcCCcCCCch
Confidence            9999887663

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=1.2e-18  Score=189.46  Aligned_cols=180  Identities=25%  Similarity=0.285  Sum_probs=144.1

Q ss_pred             CcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhh-cCCCCCEEecccccccccCCccccCCCCCCEEEc
Q 044158          551 LEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMG-RLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDL  629 (892)
Q Consensus       551 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  629 (892)
                      -+.++++++.++.+  |..+  .+.++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|
T Consensus        20 ~~~l~c~~~~l~~i--P~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           20 SNILSCSKQQLPNV--PQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TTEEECCSSCCSSC--CSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcCcc--CccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            36899999999863  4433  35689999999999987777787 8999999999999999877788999999999999


Q ss_pred             CCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCcc
Q 044158          630 SHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNK  709 (892)
Q Consensus       630 s~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~  709 (892)
                      ++|++++..+..+..                                                    +++|+.|+|++|+
T Consensus        96 s~N~l~~~~~~~~~~----------------------------------------------------l~~L~~L~L~~N~  123 (361)
T 2xot_A           96 SSNHLHTLDEFLFSD----------------------------------------------------LQALEVLLLYNNH  123 (361)
T ss_dssp             CSSCCCEECTTTTTT----------------------------------------------------CTTCCEEECCSSC
T ss_pred             CCCcCCcCCHHHhCC----------------------------------------------------CcCCCEEECCCCc
Confidence            999987544433332                                                    3468889999999


Q ss_pred             ccccCCccccccCCCCEEEccCccCCccccccc---cCCCCCCEEECCCCcCcccCCccccCCCC--CCEEEccCCcccc
Q 044158          710 LIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTF---SNLRQVESLDLSYNNLTGKIPPRLVELNA--LAVFTVAHNNLSG  784 (892)
Q Consensus       710 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~LdLs~N~l~g~ip~~l~~l~~--L~~l~ls~N~l~g  784 (892)
                      +++..|..|..+++|+.|+|++|+|++..+..|   ..+++|+.|||++|+|++..+..+..++.  ++.|++++|++.+
T Consensus       124 i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            998888889999999999999999986555555   56889999999999999766677777776  4788999998876


Q ss_pred             cC
Q 044158          785 KI  786 (892)
Q Consensus       785 ~i  786 (892)
                      ..
T Consensus       204 ~C  205 (361)
T 2xot_A          204 DC  205 (361)
T ss_dssp             CH
T ss_pred             Cc
Confidence            54

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=2.8e-18  Score=172.11  Aligned_cols=156  Identities=24%  Similarity=0.271  Sum_probs=133.1

Q ss_pred             cEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccccccccccc
Q 044158          577 LTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDL  656 (892)
Q Consensus       577 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~  656 (892)
                      +.++++++.++ .+|..+.  ++|+.|++++|++++..+..+..+++|++|+|++|++++..|..+..            
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------   78 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------   78 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence            67899999988 5665544  68999999999999877778999999999999999998666665543            


Q ss_pred             ccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCc
Q 044158          657 IPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTG  736 (892)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  736 (892)
                                                              +++|+.|+|++|.+++..+..|..+++|+.|+|++|++++
T Consensus        79 ----------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~  118 (220)
T 2v9t_B           79 ----------------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC  118 (220)
T ss_dssp             ----------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ----------------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence                                                    3368899999999996666668899999999999999998


Q ss_pred             cccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCC
Q 044158          737 TIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIP  787 (892)
Q Consensus       737 ~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip  787 (892)
                      ..|..|..+++|+.|+|++|++++..|..+..+++|+.|++++|++.+..+
T Consensus       119 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            889999999999999999999998888889999999999999999987543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=3.4e-18  Score=171.55  Aligned_cols=115  Identities=17%  Similarity=0.271  Sum_probs=105.7

Q ss_pred             CccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEc
Q 044158          698 ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTV  777 (892)
Q Consensus       698 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~l  777 (892)
                      ++|+.|++++|++++..|..|..+++|++|+|++|++++..|..|+++++|++|+|++|+|++..|..+..+++|++|++
T Consensus        57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  136 (220)
T 2v70_A           57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL  136 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred             CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence            35777888888888777778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccCCccccccCCCCcccccCCCCCCCCCC
Q 044158          778 AHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPL  812 (892)
Q Consensus       778 s~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~l  812 (892)
                      ++|++++..|..+..+..+....+.+||+.|+|++
T Consensus       137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          137 YDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             TTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             CCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            99999999998888888899999999999998864

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=5.1e-18  Score=178.29  Aligned_cols=171  Identities=25%  Similarity=0.400  Sum_probs=106.9

Q ss_pred             CCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCE
Q 044158          547 QLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRL  626 (892)
Q Consensus       547 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  626 (892)
                      .+++|++|++++|.++.+  + .+..+++|++|++++|++++..+  +..+++|++|++++|++++ ++ .+..+++|++
T Consensus        44 ~l~~L~~L~l~~~~i~~~--~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~  116 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS  116 (291)
T ss_dssp             HHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred             hcCcccEEEccCCCcccC--h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence            344555555555555542  1 35555666666666666654333  5556666666666666653 22 3566666666


Q ss_pred             EEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeecc
Q 044158          627 LDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLS  706 (892)
Q Consensus       627 L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  706 (892)
                      |++++|++++ ++ .+.                                                    .+++|+.|+++
T Consensus       117 L~L~~n~i~~-~~-~l~----------------------------------------------------~l~~L~~L~l~  142 (291)
T 1h6t_A          117 LSLEHNGISD-IN-GLV----------------------------------------------------HLPQLESLYLG  142 (291)
T ss_dssp             EECTTSCCCC-CG-GGG----------------------------------------------------GCTTCCEEECC
T ss_pred             EECCCCcCCC-Ch-hhc----------------------------------------------------CCCCCCEEEcc
Confidence            6666666653 11 111                                                    12346667777


Q ss_pred             CccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccc
Q 044158          707 CNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSG  784 (892)
Q Consensus       707 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g  784 (892)
                      +|++++.  ..++.+++|+.|++++|++++..|  +..+++|+.|++++|++++ +| .+..+++|+.|++++|+++.
T Consensus       143 ~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          143 NNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            7776654  467777788888888888876555  7778888888888888875 34 37778888888888887765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=5.9e-18  Score=169.77  Aligned_cols=153  Identities=22%  Similarity=0.236  Sum_probs=127.6

Q ss_pred             cEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCC
Q 044158          552 EILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSH  631 (892)
Q Consensus       552 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  631 (892)
                      +.++++++.++.+  |..+.  ++|+.|++++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus        14 ~~v~c~~~~l~~i--P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLTEI--PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCSSC--CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcCcC--CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            6788999988853  44333  6899999999999977777888999999999999999988888999999999999999


Q ss_pred             CcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCcccc
Q 044158          632 NNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLI  711 (892)
Q Consensus       632 N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  711 (892)
                      |++++..+..+.                                                    .+++|+.|+|++|+++
T Consensus        90 N~l~~l~~~~f~----------------------------------------------------~l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           90 NKITELPKSLFE----------------------------------------------------GLFSLQLLLLNANKIN  117 (220)
T ss_dssp             SCCCCCCTTTTT----------------------------------------------------TCTTCCEEECCSSCCC
T ss_pred             CcCCccCHhHcc----------------------------------------------------CCCCCCEEECCCCCCC
Confidence            998833222222                                                    2346889999999999


Q ss_pred             ccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcc
Q 044158          712 GEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG  760 (892)
Q Consensus       712 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g  760 (892)
                      +..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus       118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            8888889999999999999999998888889999999999999998875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=5e-18  Score=178.32  Aligned_cols=188  Identities=25%  Similarity=0.383  Sum_probs=124.3

Q ss_pred             CcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCE
Q 044158           51 LESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEG  130 (892)
Q Consensus        51 L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~  130 (892)
                      +..+.+..+.+++...      +..+++|++|++++|.+...  +.+..+++|++|++++|.+++ ++.  +..+++|++
T Consensus        26 ~~~~~l~~~~~~~~~~------~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~   94 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVT------QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGW   94 (291)
T ss_dssp             HHHHHTTCSCTTSEEC------HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCE
T ss_pred             HHHHHhcCCCcccccc------hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCE
Confidence            3344455555543322      34566777777777776643  346677777777777777663 332  667777777


Q ss_pred             EeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEc
Q 044158          131 LDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYI  210 (892)
Q Consensus       131 L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L  210 (892)
                      |++++|.+++.  +. +..+++|++|++++|.+++.    ..+..+++|++|++++|.+.+.    ..+..+++|++|++
T Consensus        95 L~l~~n~l~~~--~~-l~~l~~L~~L~L~~n~i~~~----~~l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L  163 (291)
T 1h6t_A           95 LFLDENKVKDL--SS-LKDLKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSL  163 (291)
T ss_dssp             EECCSSCCCCG--GG-GTTCTTCCEEECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEEC
T ss_pred             EECCCCcCCCC--hh-hccCCCCCEEECCCCcCCCC----hhhcCCCCCCEEEccCCcCCcc----hhhccCCCCCEEEc
Confidence            77777777664  22 67777777777777777653    3566677777777777776654    24667777777777


Q ss_pred             cCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCcccc
Q 044158          211 DHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQ  265 (892)
Q Consensus       211 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~  265 (892)
                      ++|.+.+..+  +..+++|+.|++++|.+++ +  ..+..+++|+.|++++|++.
T Consensus       164 ~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l--~~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          164 EDNQISDIVP--LAGLTKLQNLYLSKNHISD-L--RALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CSSCCCCCGG--GTTCTTCCEEECCSSCCCB-C--GGGTTCTTCSEEEEEEEEEE
T ss_pred             cCCccccchh--hcCCCccCEEECCCCcCCC-C--hhhccCCCCCEEECcCCccc
Confidence            7777776554  7777777777777777765 2  34677777777777777665

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=4.2e-18  Score=185.24  Aligned_cols=177  Identities=24%  Similarity=0.268  Sum_probs=141.3

Q ss_pred             cEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCccccccc-CCCCccEEEccCCccCccCChhhhcCCCCCEEecc
Q 044158          528 DAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFS-KCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILA  606 (892)
Q Consensus       528 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  606 (892)
                      +.++++++.++. +|..+.  ..++.|+|++|+++++. +..+. ++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~-~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLR-AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEEC-TTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccC-hhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            578899998874 566554  45889999999998733 55666 88999999999999998777889999999999999


Q ss_pred             cccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeec
Q 044158          607 NNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTK  686 (892)
Q Consensus       607 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (892)
                      +|++++..+..|..+++|++|+|++|++++..|..+..                                          
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~------------------------------------------  134 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED------------------------------------------  134 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT------------------------------------------
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC------------------------------------------
Confidence            99998777778889999999999999988655554433                                          


Q ss_pred             ccccccCCCCcCccceeeccCccccccCCccc---cccCCCCEEEccCccCCccccccccCCCC--CCEEECCCCcCcc
Q 044158          687 ERSYTYKGQPLESIHGLDLSCNKLIGEIPSRI---GELIRIHTLNLSRNNLTGTIPVTFSNLRQ--VESLDLSYNNLTG  760 (892)
Q Consensus       687 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~LdLs~N~l~g  760 (892)
                                +++|+.|+|++|++++..+..|   ..+++|+.|+|++|+|++..+..+..++.  ++.|+|++|.+..
T Consensus       135 ----------l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          135 ----------MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             ----------CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             ----------cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence                      3368889999999986444444   67899999999999999777777888876  4889999998874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=3.7e-18  Score=196.53  Aligned_cols=168  Identities=23%  Similarity=0.320  Sum_probs=127.8

Q ss_pred             cCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECC
Q 044158          454 NLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMP  533 (892)
Q Consensus       454 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~  533 (892)
                      .+..+.++.+.+....+  +..+++|+.|++++|.+... + .+..+++|+.|+|++|++++..+  +..+++|+.|+|+
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence            45556667777665433  45788888899998888743 3 57888889999999888887655  7788888888888


Q ss_pred             CCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccccccccc
Q 044158          534 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGE  613 (892)
Q Consensus       534 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  613 (892)
                      +|.+++.  ..+..+++|+.|+|++|.++++   ..+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++++.
T Consensus        96 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A           96 ENKIKDL--SSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             SSCCCCC--TTSTTCTTCCEEECTTSCCCCC---GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred             CCCCCCC--hhhccCCCCCEEEecCCCCCCC---ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence            8888752  3677888888888888888763   3577788888888888888754  5677788888888888888765


Q ss_pred             CCccccCCCCCCEEEcCCCcCCC
Q 044158          614 VPLRLCQLQKLRLLDLSHNNFSG  636 (892)
Q Consensus       614 ~~~~~~~l~~L~~L~Ls~N~l~g  636 (892)
                      .|  +..+++|+.|+|++|++++
T Consensus       169 ~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          169 VP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCB
T ss_pred             hh--hccCCCCCEEECcCCCCCC
Confidence            55  7778888888888887764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.7e-17  Score=191.06  Aligned_cols=189  Identities=20%  Similarity=0.227  Sum_probs=102.4

Q ss_pred             CCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEee
Q 044158          405 NLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNL  484 (892)
Q Consensus       405 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  484 (892)
                      .+..+.+..+.+.+..+  +..+++|+.|++++|.+. .++.  +..+++|+.|+|++|.+++..+  +..+++|+.|+|
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence            45556666666664433  456677778888887776 5553  3456777777777777665444  566666666666


Q ss_pred             cCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCC
Q 044158          485 DGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR  564 (892)
Q Consensus       485 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  564 (892)
                      ++|.+.+ +| .+..+++|+.|+|++|++.+.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.++++
T Consensus        95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A           95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred             cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence            6666654 22 455666666666666665542  2344455555555555555433  3344444455555555444432


Q ss_pred             cccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccccccc
Q 044158          565 PLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE  611 (892)
Q Consensus       565 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  611 (892)
                      . |  +..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++.
T Consensus       169 ~-~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          169 V-P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             G-G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred             h-h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence            1 1  44444444444444444432  12444444444444444444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=2.3e-17  Score=166.64  Aligned_cols=158  Identities=22%  Similarity=0.229  Sum_probs=136.8

Q ss_pred             CccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccccccccc
Q 044158          575 YLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYY  654 (892)
Q Consensus       575 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~  654 (892)
                      +-+.++.+++.++ .+|..+.  ++|++|+|++|++++..|..+..+++|++|+|++|++++..+..+..          
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------   86 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------   86 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc----------
Confidence            4678999999987 5665443  79999999999999988999999999999999999996433333332          


Q ss_pred             ccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccC
Q 044158          655 DLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNL  734 (892)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  734 (892)
                                                                +++|+.|+|++|++++..+..|..+++|+.|+|++|++
T Consensus        87 ------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A           87 ------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL  124 (229)
T ss_dssp             ------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ------------------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence                                                      34799999999999987777789999999999999999


Q ss_pred             CccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCc
Q 044158          735 TGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPE  788 (892)
Q Consensus       735 ~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~  788 (892)
                      + .+|..+..+++|+.|+|++|+|++..+..+..+++|+.|++++|++.+..+.
T Consensus       125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A          125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence            9 7899999999999999999999987778899999999999999999987763

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=2.1e-17  Score=166.96  Aligned_cols=157  Identities=23%  Similarity=0.248  Sum_probs=132.4

Q ss_pred             CCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEc
Q 044158          550 YLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDL  629 (892)
Q Consensus       550 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  629 (892)
                      +.+.++.+++.++.+  |..+  .++|++|++++|++++..|..+..+++|++|+|++|++++..+..+..+++|++|+|
T Consensus        20 s~~~v~c~~~~l~~i--p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           20 SGTTVDCRSKRHASV--PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             ETTEEECTTSCCSSC--CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             eCCEeEccCCCcCcc--CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            367899999998853  4433  389999999999999888889999999999999999998666677889999999999


Q ss_pred             CCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCcc
Q 044158          630 SHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNK  709 (892)
Q Consensus       630 s~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~  709 (892)
                      ++|++++..+..+..                                                    +++|+.|++++|+
T Consensus        96 s~N~l~~l~~~~~~~----------------------------------------------------l~~L~~L~Ls~N~  123 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDR----------------------------------------------------LVHLKELFMCCNK  123 (229)
T ss_dssp             CSSCCCCCCTTTTTT----------------------------------------------------CTTCCEEECCSSC
T ss_pred             CCCcCCccChhHhCc----------------------------------------------------chhhCeEeccCCc
Confidence            999998544433332                                                    3468999999999


Q ss_pred             ccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCC
Q 044158          710 LIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIP  763 (892)
Q Consensus       710 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip  763 (892)
                      ++ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|++++|.+++..+
T Consensus       124 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            99 788899999999999999999998877889999999999999999987654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=3.5e-17  Score=161.30  Aligned_cols=155  Identities=17%  Similarity=0.269  Sum_probs=96.0

Q ss_pred             cCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccccc
Q 044158          571 SKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHRE  650 (892)
Q Consensus       571 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~  650 (892)
                      ..+++|++|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..|..+..      
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------  110 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------  110 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence            33445555555555555 333 3555555666666655443  2234555666666666666665444433322      


Q ss_pred             ccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEcc
Q 044158          651 EGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLS  730 (892)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  730 (892)
                                                                    +++|+.|++++|.+++..|..++.+++|+.|+++
T Consensus       111 ----------------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~  144 (197)
T 4ezg_A          111 ----------------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS  144 (197)
T ss_dssp             ----------------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECC
T ss_pred             ----------------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEcc
Confidence                                                          2246666666777766667777788888888888


Q ss_pred             CccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccc
Q 044158          731 RNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSG  784 (892)
Q Consensus       731 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g  784 (892)
                      +|.+.+.+| .++.+++|+.|++++|++++ +| .+..+++|+.|++++|++.+
T Consensus       145 ~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          145 YNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             CCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            887333555 57788888888888888885 34 67788888888888887753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=1e-18  Score=200.10  Aligned_cols=196  Identities=18%  Similarity=0.167  Sum_probs=132.2

Q ss_pred             cCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCC
Q 044158          522 GNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLR  601 (892)
Q Consensus       522 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~  601 (892)
                      ..++.|+.|+|++|+++ .+|..++++++|+.|++++|.... ..+..           +..+...+..|..++.+++|+
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~-~l~~l-----------l~~~~~~~~~~~~l~~l~~L~  412 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLL-TIILL-----------MRALDPLLYEKETLQYFSTLK  412 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHH-HHHHH-----------HHHHCTGGGHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhh-hHHHH-----------HHhcccccCCHHHHHHHHhcc
Confidence            34455555555555554 445555555555555554432100 00000           000113445566666666666


Q ss_pred             EEe-cccccccccCCc------ccc--CCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCC
Q 044158          602 YLI-LANNNFEGEVPL------RLC--QLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVG  672 (892)
Q Consensus       602 ~L~-L~~n~l~~~~~~------~~~--~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  672 (892)
                      .|+ ++.|.+.. ++.      .+.  ....|+.|+|++|++++ +|. +..                            
T Consensus       413 ~L~~l~~n~~~~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~----------------------------  461 (567)
T 1dce_A          413 AVDPMRAAYLDD-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQ----------------------------  461 (567)
T ss_dssp             HHCGGGHHHHHH-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGG----------------------------
T ss_pred             cCcchhhcccch-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccc----------------------------
Confidence            666 44443321 110      000  11358999999999985 564 433                            


Q ss_pred             CCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEE
Q 044158          673 PSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLD  752 (892)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~Ld  752 (892)
                                              +++|+.|+|++|.++ .+|..++.+++|+.|+|++|+|++ +| .++++++|+.|+
T Consensus       462 ------------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~  514 (567)
T 1dce_A          462 ------------------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELL  514 (567)
T ss_dssp             ------------------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEE
T ss_pred             ------------------------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEE
Confidence                                    336889999999999 789999999999999999999996 67 899999999999


Q ss_pred             CCCCcCcccC-CccccCCCCCCEEEccCCcccccCCc
Q 044158          753 LSYNNLTGKI-PPRLVELNALAVFTVAHNNLSGKIPE  788 (892)
Q Consensus       753 Ls~N~l~g~i-p~~l~~l~~L~~l~ls~N~l~g~ip~  788 (892)
                      |++|+|++.+ |..+..+++|+.|++++|++++.+|.
T Consensus       515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            9999999887 99999999999999999999988775

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=4.2e-17  Score=159.77  Aligned_cols=90  Identities=24%  Similarity=0.348  Sum_probs=71.6

Q ss_pred             ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 044158          699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA  778 (892)
Q Consensus       699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls  778 (892)
                      +|+.|+|++|++++..|..|..+++|++|+|++|++++..|..|+++++|+.|+|++|++++.+|..+..+++|++|+++
T Consensus        55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            56667777777777777777888888888888888887777778888888888888888888888888888888888888


Q ss_pred             CCcccccCCc
Q 044158          779 HNNLSGKIPE  788 (892)
Q Consensus       779 ~N~l~g~ip~  788 (892)
                      +|+++|.++.
T Consensus       135 ~N~l~c~c~l  144 (192)
T 1w8a_A          135 SNPFNCNCHL  144 (192)
T ss_dssp             TCCBCCSGGG
T ss_pred             CCCccCcCcc
Confidence            8888877663

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1.2e-16  Score=157.42  Aligned_cols=151  Identities=17%  Similarity=0.219  Sum_probs=73.0

Q ss_pred             CccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEE
Q 044158          452 CFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAII  531 (892)
Q Consensus       452 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  531 (892)
                      +++|+.|++++|.++. ++ .+..+++|++|++++|.+..  +..+..+++|++|++++|++++..+..+..+++|+.|+
T Consensus        43 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            4455555555555552 22 34455555555555554331  22445555555555555555544444444445555555


Q ss_pred             CCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCc-cCccCChhhhcCCCCCEEecccccc
Q 044158          532 MPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNR-LNGNIPNWMGRLSQLRYLILANNNF  610 (892)
Q Consensus       532 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l  610 (892)
                      +++|.+++..|..+                         ..+++|++|++++|+ ++ .+| .+..+++|++|++++|++
T Consensus       119 Ls~n~i~~~~~~~l-------------------------~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i  171 (197)
T 4ezg_A          119 ISHSAHDDSILTKI-------------------------NTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGV  171 (197)
T ss_dssp             CCSSBCBGGGHHHH-------------------------TTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCC
T ss_pred             ecCCccCcHhHHHH-------------------------hhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCC
Confidence            55554444444444                         444555555555554 32 233 344555555555555555


Q ss_pred             cccCCccccCCCCCCEEEcCCCcCC
Q 044158          611 EGEVPLRLCQLQKLRLLDLSHNNFS  635 (892)
Q Consensus       611 ~~~~~~~~~~l~~L~~L~Ls~N~l~  635 (892)
                      ++ ++ .+..+++|++|++++|++.
T Consensus       172 ~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          172 HD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CC-CT-TGGGCSSCCEEEECBC---
T ss_pred             cC-hH-HhccCCCCCEEEeeCcccC
Confidence            43 22 4455555555555555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=8e-17  Score=157.76  Aligned_cols=132  Identities=25%  Similarity=0.330  Sum_probs=87.0

Q ss_pred             cEEEccCCccCccCChhhhcCCCCCEEecccccccccCCc-cccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccc
Q 044158          577 LTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPL-RLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYD  655 (892)
Q Consensus       577 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~  655 (892)
                      +++++++|.++ .+|..+.  ++|++|++++|++++..+. .+..+++|++|+|++|++++..|..+..+          
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----------   77 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA----------   77 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC----------
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc----------
Confidence            34455555543 3343222  2555555555555544332 25566666666666666665545444322          


Q ss_pred             cccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCC
Q 044158          656 LIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLT  735 (892)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  735 (892)
                                                                ++|+.|+|++|++++..|..|..+++|++|+|++|+++
T Consensus        78 ------------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  115 (192)
T 1w8a_A           78 ------------------------------------------SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             ------------------------------------------TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred             ------------------------------------------ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence                                                      24666777777777667777888888999999999999


Q ss_pred             ccccccccCCCCCCEEECCCCcCcccCC
Q 044158          736 GTIPVTFSNLRQVESLDLSYNNLTGKIP  763 (892)
Q Consensus       736 ~~~p~~~~~l~~L~~LdLs~N~l~g~ip  763 (892)
                      +.+|..|+.+++|+.|+|++|.+++..+
T Consensus       116 ~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          116 CVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             EECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             eeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            8888889999999999999999987765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=5.2e-19  Score=202.54  Aligned_cols=122  Identities=20%  Similarity=0.295  Sum_probs=84.1

Q ss_pred             CCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEc
Q 044158          502 SLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDL  581 (892)
Q Consensus       502 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L  581 (892)
                      .|+.|++++|.+++ +|. ++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|+++++  | .+..+++|++|+|
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l--p-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--D-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--G-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC--c-ccCCCCCCcEEEC
Confidence            36666777766664 344 666667777777777766 5666777777777777777777763  3 6777777777777


Q ss_pred             cCCccCccC-ChhhhcCCCCCEEecccccccccCCcc---ccCCCCCCEEEc
Q 044158          582 CNNRLNGNI-PNWMGRLSQLRYLILANNNFEGEVPLR---LCQLQKLRLLDL  629 (892)
Q Consensus       582 ~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L  629 (892)
                      ++|++++.. |..++.+++|+.|+|++|++++..|..   +..+++|+.|++
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            777777665 777777777777888777777654421   234677777764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=6.3e-17  Score=167.06  Aligned_cols=166  Identities=22%  Similarity=0.288  Sum_probs=91.6

Q ss_pred             CcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCC
Q 044158          455 LEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPD  534 (892)
Q Consensus       455 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~  534 (892)
                      +..+++++|.+++..  .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|++++..+  +..+++|+.|++++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            334444444444322  33444555555555555442 22 34555555555555555554333  55555555555555


Q ss_pred             CcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccC
Q 044158          535 NHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEV  614 (892)
Q Consensus       535 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  614 (892)
                      |++++. |. +.. ++|++|++++|+++++   ..+..+++|++|++++|++++. + .++.+++|++|++++|++++. 
T Consensus        95 N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~---~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A           95 NRLKNL-NG-IPS-ACLSRLFLDNNELRDT---DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             SCCSCC-TT-CCC-SSCCEEECCSSCCSBS---GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred             CccCCc-Cc-ccc-CcccEEEccCCccCCC---hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence            555532 22 222 5666666666666652   2466666666666666666643 2 466666677777777766654 


Q ss_pred             CccccCCCCCCEEEcCCCcCCC
Q 044158          615 PLRLCQLQKLRLLDLSHNNFSG  636 (892)
Q Consensus       615 ~~~~~~l~~L~~L~Ls~N~l~g  636 (892)
                       ..+..+++|+.|++++|++++
T Consensus       166 -~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          166 -GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             -TTSTTCCCCCEEEEEEEEEEC
T ss_pred             -HHhccCCCCCEEeCCCCcccC
Confidence             456666677777777776653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=1.3e-17  Score=197.20  Aligned_cols=155  Identities=23%  Similarity=0.291  Sum_probs=73.9

Q ss_pred             CCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCC---------CccccccCCCCCcEEECCCCcccCCCcccccC
Q 044158          477 TKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISG---------SIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQ  547 (892)
Q Consensus       477 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  547 (892)
                      +.++.|+|.+|.+... +..+     |+.++|+.|.+.+         ..+..+..++.|+.|+|++|.+. .+|..+..
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~  245 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFK  245 (727)
T ss_dssp             -------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGG
T ss_pred             CccceEEeeCCCCCcc-hhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcC
Confidence            5678888888887653 3322     3344444444332         34555666666666666666666 45555556


Q ss_pred             CCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEE
Q 044158          548 LDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLL  627 (892)
Q Consensus       548 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  627 (892)
                      +++|++|+|++|.++  .+|..|.++++|++|+|++|+++ .+|..++.+++|++|+|++|.++ .+|..|+.+++|++|
T Consensus       246 l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L  321 (727)
T 4b8c_D          246 YDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL  321 (727)
T ss_dssp             CCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCE
T ss_pred             CCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEE
Confidence            666666666666666  34556666666666666666666 55666666666666666666665 556666666666666


Q ss_pred             EcCCCcCCCCCCccc
Q 044158          628 DLSHNNFSGQIPPCL  642 (892)
Q Consensus       628 ~Ls~N~l~g~~p~~~  642 (892)
                      +|++|+++|.+|..+
T Consensus       322 ~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          322 GVEGNPLEKQFLKIL  336 (727)
T ss_dssp             ECTTSCCCSHHHHHH
T ss_pred             eCCCCccCCCChHHH
Confidence            666666666555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.67  E-value=2e-17  Score=195.60  Aligned_cols=183  Identities=21%  Similarity=0.214  Sum_probs=104.8

Q ss_pred             ccCcEEEccCCcccccccccccccCCCc-----EEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCC
Q 044158          453 FNLEYLLLSNNSLQGQLFSKKINLTKLK-----RLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFL  527 (892)
Q Consensus       453 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~-----~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  527 (892)
                      +.++.|+|.+|.+... +..+.....|.     .+++..|.+. ..+..+..+++|+.|+|++|.+. .+|..+..+++|
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            4567777777777653 22221111222     2222233333 34566777888888888888887 566666678888


Q ss_pred             cEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccc
Q 044158          528 DAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILAN  607 (892)
Q Consensus       528 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  607 (892)
                      +.|+|++|.++ .+|..|+.+++|++|+|++|.|+  .+|..|..+++|++|+|++|.++ .+|..|+.+++|++|+|++
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence            88888888887 67777888888888888888887  45777888888888888888886 6677788888888888888


Q ss_pred             ccccccCCccccCCCC-CCEEEcCCCcCCCCCCccc
Q 044158          608 NNFEGEVPLRLCQLQK-LRLLDLSHNNFSGQIPPCL  642 (892)
Q Consensus       608 n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~g~~p~~~  642 (892)
                      |++++.+|..+..+.. +..++|++|.++|.+|..+
T Consensus       326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l  361 (727)
T 4b8c_D          326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER  361 (727)
T ss_dssp             SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred             CccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence            8888777776654322 2236677777777666543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=1.8e-16  Score=163.57  Aligned_cols=169  Identities=20%  Similarity=0.264  Sum_probs=97.6

Q ss_pred             CCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEe
Q 044158          404 PNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLN  483 (892)
Q Consensus       404 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  483 (892)
                      .++..++++++.+++..  .+..+++|++|++++|.++ .++ . +..+++|++|++++|++++..+  +..+++|+.|+
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            34556666666665332  3556666666666666665 444 1 2345555555555555554332  44444555555


Q ss_pred             ecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCC
Q 044158          484 LDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG  563 (892)
Q Consensus       484 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  563 (892)
                      +++|                        ++++. |. +.. ++|+.|++++|++++.  ..+..+++|++|++++|++++
T Consensus        92 L~~N------------------------~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A           92 VNRN------------------------RLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             CCSS------------------------CCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB
T ss_pred             CCCC------------------------ccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC
Confidence            5554                        44432 11 111 5555555555555542  246666777777777777765


Q ss_pred             CcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccccccccc
Q 044158          564 RPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGE  613 (892)
Q Consensus       564 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  613 (892)
                      +  + .+..+++|++|++++|++++.  ..+..+++|+.|++++|++.+.
T Consensus       143 ~--~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          143 I--V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             C--G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             C--h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            3  2 566677777777777777654  4566777777777777777644

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=3e-16  Score=168.35  Aligned_cols=284  Identities=12%  Similarity=0.079  Sum_probs=176.0

Q ss_pred             CCCccEEEccCCcCccccchhhhhc-CCCCCEEEccCCcCc--CCCCCCCCCCCCccEEEccCCcCCCCCchhhhhc---
Q 044158          329 QHHLEFVIISDVNMRGEFPSWLLEN-NTNLRSIILANNSLS--GPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKV---  402 (892)
Q Consensus       329 ~~~L~~L~l~~~~~~~~~p~~~~~~-~~~L~~L~L~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~---  402 (892)
                      ..+++.|.++++--...+ .. +.. +++|+.|+|++|.+.  ....   ..++.+..+.+..|    .+|...|..   
T Consensus        24 ~~~l~~L~l~g~i~~~~~-~~-l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~----~I~~~aF~~~~~   94 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDF-RH-LRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMAN----FVPAYAFSNVVN   94 (329)
T ss_dssp             HHHCSEEEEEEEECHHHH-HH-HHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTT----EECTTTTEEEET
T ss_pred             hCceeEEEEeccccHHHH-HH-HHHhhccCeEEecCcceeEEecCcc---cccccccccccccc----ccCHHHhccccc
Confidence            446777777653211111 12 233 777888888888776  2111   12222444555544    455666666   


Q ss_pred             -----CCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCc----ccccccccc
Q 044158          403 -----LPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNS----LQGQLFSKK  473 (892)
Q Consensus       403 -----l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~----l~~~~~~~~  473 (892)
                           +++|+.+++.+ .++.+.+.+|.++++|+.+++.+|.+. .++...|.++.++..+....+.    ........|
T Consensus        95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f  172 (329)
T 3sb4_A           95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF  172 (329)
T ss_dssp             TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred             ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccc
Confidence                 77888888877 777666677888888888888888777 6777777776666666655532    222233445


Q ss_pred             cccCCCc-EEeecCccCcCCCCccc----ccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCC
Q 044158          474 INLTKLK-RLNLDGNHFIGGIPESL----SNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQL  548 (892)
Q Consensus       474 ~~l~~L~-~L~L~~n~~~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  548 (892)
                      .++..|+ .+.+....   .++..+    ....+++.+.+.++-...........+++|+.+++++|+++...+.+|.++
T Consensus       173 ~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~  249 (329)
T 3sb4_A          173 IEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK  249 (329)
T ss_dssp             EESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC
T ss_pred             ccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCC
Confidence            5566665 44443321   122111    123445555555432111111111236788888888888876666778888


Q ss_pred             CCCcEEeCCCCccCCCcccccccCCCCcc-EEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEE
Q 044158          549 DYLEILDLSKNNIAGRPLNGAFSKCSYLL-TLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLL  627 (892)
Q Consensus       549 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  627 (892)
                      .+|+.+++.+| ++.+ -+.+|.+|++|+ .+++.+ .++.+.+..|.+|++|+.+++++|+++...+..|.++++|+.+
T Consensus       250 ~~L~~l~l~~n-i~~I-~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          250 KYLLKIKLPHN-LKTI-GQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             TTCCEEECCTT-CCEE-CTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred             CCCCEEECCcc-ccee-hHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence            88888888877 6542 256788888888 888887 6665666788888888888888888887777788888888877


Q ss_pred             Ec
Q 044158          628 DL  629 (892)
Q Consensus       628 ~L  629 (892)
                      ..
T Consensus       327 y~  328 (329)
T 3sb4_A          327 YK  328 (329)
T ss_dssp             EC
T ss_pred             cc
Confidence            53

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.62  E-value=1.7e-15  Score=148.08  Aligned_cols=113  Identities=22%  Similarity=0.363  Sum_probs=103.3

Q ss_pred             ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 044158          699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA  778 (892)
Q Consensus       699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls  778 (892)
                      .++.|++++|.++ .+|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..|..|..+++|++|+++
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            5888999999998 788899999999999999999999888999999999999999999999888899999999999999


Q ss_pred             CCcccccCCccccccCCCCcccccCCCCCCCCCC
Q 044158          779 HNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPL  812 (892)
Q Consensus       779 ~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~l  812 (892)
                      +|++++..+..+..+..+....+.+||+.|+|.+
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence            9999987776677788888899999999998864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=2e-15  Score=144.47  Aligned_cols=133  Identities=20%  Similarity=0.186  Sum_probs=79.3

Q ss_pred             CCCcEEeecCccCc-CCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEe
Q 044158          477 TKLKRLNLDGNHFI-GGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILD  555 (892)
Q Consensus       477 ~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  555 (892)
                      ++|+.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45555555555554 44555555556666666666665543  4455555555555555555554555555566666666


Q ss_pred             CCCCccCCCcccccccCCCCccEEEccCCccCccCC---hhhhcCCCCCEEeccccccc
Q 044158          556 LSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP---NWMGRLSQLRYLILANNNFE  611 (892)
Q Consensus       556 Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~L~~n~l~  611 (892)
                      +++|.+++++.+..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            666666654333556666667777777776665444   35666666666666666665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=8.2e-16  Score=164.92  Aligned_cols=279  Identities=15%  Similarity=0.101  Sum_probs=185.2

Q ss_pred             CCCCCEEEccCCcCcCCCCCCCCC-CCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccC------
Q 044158          354 NTNLRSIILANNSLSGPFRLPTRS-RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGD------  426 (892)
Q Consensus       354 ~~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~------  426 (892)
                      ..++++|.++++--... ...+.. +++|+.|||++|++. ...... ..++.++.+.+..|.+   .+.+|.+      
T Consensus        24 ~~~l~~L~l~g~i~~~~-~~~l~~~l~~L~~LdLs~n~i~-~~~~~~-~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~   97 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAED-FRHLRDEFPSLKVLDISNAEIK-MYSGKA-GTYPNGKFYIYMANFV---PAYAFSNVVNGVT   97 (329)
T ss_dssp             HHHCSEEEEEEEECHHH-HHHHHHSCTTCCEEEEEEEEEC-CEEESS-SSSGGGCCEEECTTEE---CTTTTEEEETTEE
T ss_pred             hCceeEEEEeccccHHH-HHHHHHhhccCeEEecCcceeE-EecCcc-cccccccccccccccc---CHHHhcccccccc
Confidence            45678888876421100 001112 677888888888876 111111 1123344555555532   3445666      


Q ss_pred             --CCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCcc----CcCCCCcccccC
Q 044158          427 --MNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNH----FIGGIPESLSNC  500 (892)
Q Consensus       427 --l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----~~~~~~~~~~~l  500 (892)
                        +++|+.++|.+ .++ .|++..|.+|++|+.+++++|.+..+.+..|.++.++..+.+..+.    ........|.++
T Consensus        98 ~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~  175 (329)
T 3sb4_A           98 KGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG  175 (329)
T ss_dssp             EECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred             cccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence              88888888888 777 7888888888888888888888887777888887777777665532    122334556677


Q ss_pred             CCCc-EEEccCCcCCCCccccc----cCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCC
Q 044158          501 SSLQ-GLYISDNDISGSIPTWM----GNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSY  575 (892)
Q Consensus       501 ~~L~-~L~L~~n~l~~~~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~  575 (892)
                      ..|+ .+.+....   .++..+    ....+++.+.+.++-...........+++|+.++|++|+++.++ +.+|.+|++
T Consensus       176 ~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~-~~aF~~~~~  251 (329)
T 3sb4_A          176 EPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIP-DFTFAQKKY  251 (329)
T ss_dssp             CCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEEC-TTTTTTCTT
T ss_pred             cccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceec-HhhhhCCCC
Confidence            7777 45554321   222211    12345556665544222111111124789999999999998743 568999999


Q ss_pred             ccEEEccCCccCccCChhhhcCCCCC-EEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCc
Q 044158          576 LLTLDLCNNRLNGNIPNWMGRLSQLR-YLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTS  646 (892)
Q Consensus       576 L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~  646 (892)
                      |+.+++.+| ++...+.+|.++++|+ .+++.+ .++...+..|.++++|+.+++++|+++..-+..|.++.
T Consensus       252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~  321 (329)
T 3sb4_A          252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV  321 (329)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTC
T ss_pred             CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCc
Confidence            999999998 7766677999999999 999998 77767788999999999999999999844444665543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=2.3e-15  Score=140.82  Aligned_cols=129  Identities=22%  Similarity=0.201  Sum_probs=79.7

Q ss_pred             cCCCcEEeecCccCc-CCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEE
Q 044158          476 LTKLKRLNLDGNHFI-GGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEIL  554 (892)
Q Consensus       476 l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  554 (892)
                      .++|+.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            355666666666665 55666666667777777777766654  455566666666666666665556555556666666


Q ss_pred             eCCCCccCCCcccccccCCCCccEEEccCCccCccCC---hhhhcCCCCCEEecc
Q 044158          555 DLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP---NWMGRLSQLRYLILA  606 (892)
Q Consensus       555 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~L~  606 (892)
                      ++++|++++.+.+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            6666666653333556666666666666666665444   355566666666654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=4.4e-15  Score=142.11  Aligned_cols=86  Identities=23%  Similarity=0.229  Sum_probs=65.4

Q ss_pred             CccceeeccCccccccCCccccccCCCCEEEccCccCCccc-cccccCCCCCCEEECCCCcCcccCC---ccccCCCCCC
Q 044158          698 ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTI-PVTFSNLRQVESLDLSYNNLTGKIP---PRLVELNALA  773 (892)
Q Consensus       698 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~g~ip---~~l~~l~~L~  773 (892)
                      ++|+.|++++|.+++.+|..+..+++|+.|+|++|++++.. +..++.+++|+.|++++|++++..+   ..+..+++|+
T Consensus        71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  150 (168)
T 2ell_A           71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT  150 (168)
T ss_dssp             SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred             CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence            35667777777777667777777888888888888887643 2677888888888888888886555   4778888888


Q ss_pred             EEEccCCccc
Q 044158          774 VFTVAHNNLS  783 (892)
Q Consensus       774 ~l~ls~N~l~  783 (892)
                      +||+++|.+.
T Consensus       151 ~L~l~~n~~~  160 (168)
T 2ell_A          151 YLDGYDREDQ  160 (168)
T ss_dssp             EETTEETTSC
T ss_pred             EecCCCCChh
Confidence            8888888775

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.58  E-value=3.6e-14  Score=155.17  Aligned_cols=265  Identities=12%  Similarity=0.072  Sum_probs=170.7

Q ss_pred             CCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEE
Q 044158          354 NTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYL  433 (892)
Q Consensus       354 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L  433 (892)
                      +..++.+.+.++ ++......|..+ +|+.+.+..+ ++ .|+...|.. .+|+.+.+.. .+....+.+|.++++|+.+
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence            455555555442 333344455553 5777776655 44 566666554 4677777765 5555566677777777777


Q ss_pred             ECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcC
Q 044158          434 DLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDI  513 (892)
Q Consensus       434 ~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l  513 (892)
                      ++.+|+++ .++...|. +.+|+.+.+..+ ++.+....|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.+
T Consensus       186 ~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i  259 (401)
T 4fdw_A          186 DLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV  259 (401)
T ss_dssp             ECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred             ecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence            77777777 67777665 567777777643 66566667777777777777764 44344455666 677777773 445


Q ss_pred             CCCccccccCCCCCcEEECCCCccc-----CCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCc
Q 044158          514 SGSIPTWMGNISFLDAIIMPDNHLE-----GPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNG  588 (892)
Q Consensus       514 ~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  588 (892)
                      +.....+|.+|++|+.+.+.+|.+.     ...+.+|.++++|+.+++.+ .++.+. ..+|.+|++|+.+++..+ ++.
T Consensus       260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~-~~aF~~c~~L~~l~lp~~-l~~  336 (401)
T 4fdw_A          260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG-QGLLGGNRKVTQLTIPAN-VTQ  336 (401)
T ss_dssp             CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC-TTTTTTCCSCCEEEECTT-CCE
T ss_pred             cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh-hhhhcCCCCccEEEECcc-ccE
Confidence            5455667777777777777666553     34455677777888888773 455422 457777888888888554 554


Q ss_pred             cCChhhhcCCCCCEEecccccccccCCccccCCC-CCCEEEcCCCcC
Q 044158          589 NIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQ-KLRLLDLSHNNF  634 (892)
Q Consensus       589 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l  634 (892)
                      .-+.+|.++ +|+.+++++|......+..|..++ .++.|.+..+.+
T Consensus       337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            555677777 788888888777655556666663 567777665543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.1e-14  Score=142.38  Aligned_cols=89  Identities=25%  Similarity=0.284  Sum_probs=74.7

Q ss_pred             ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 044158          699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA  778 (892)
Q Consensus       699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls  778 (892)
                      +|+.|+|++|.+++..|..|..+++|++|+|++|++++..|..|.++++|+.|+|++|+|++..+..+..+++|+.|+++
T Consensus        55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence            46667777777776667778888899999999999998888889999999999999999997766678889999999999


Q ss_pred             CCcccccCC
Q 044158          779 HNNLSGKIP  787 (892)
Q Consensus       779 ~N~l~g~ip  787 (892)
                      +|++.+...
T Consensus       135 ~N~~~C~c~  143 (193)
T 2wfh_A          135 ANPLYCDCN  143 (193)
T ss_dssp             SSCEECSGG
T ss_pred             CCCeecCCc
Confidence            999987544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=4e-15  Score=139.22  Aligned_cols=128  Identities=21%  Similarity=0.242  Sum_probs=91.9

Q ss_pred             CCCCEEeccccccc-ccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCC
Q 044158          598 SQLRYLILANNNFE-GEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMG  676 (892)
Q Consensus       598 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  676 (892)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|++++.  ..+.                                 
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~---------------------------------   61 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLP---------------------------------   61 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCC---------------------------------
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhh---------------------------------
Confidence            45666666666666 55666666667777777777766532  1111                                 


Q ss_pred             CcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCcc-ccccccCCCCCCEEECCC
Q 044158          677 EKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGT-IPVTFSNLRQVESLDLSY  755 (892)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~LdLs~  755 (892)
                                         .+++|+.|++++|.+++.+|..++.+++|+.|++++|++++. .|..++.+++|+.|++++
T Consensus        62 -------------------~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~  122 (149)
T 2je0_A           62 -------------------KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN  122 (149)
T ss_dssp             -------------------CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred             -------------------cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence                               133577777777777776777777788888888888888864 447788888888888888


Q ss_pred             CcCcccCC---ccccCCCCCCEEEccC
Q 044158          756 NNLTGKIP---PRLVELNALAVFTVAH  779 (892)
Q Consensus       756 N~l~g~ip---~~l~~l~~L~~l~ls~  779 (892)
                      |++++..+   ..+..+++|+.||+++
T Consensus       123 N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          123 CEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CcccchHHHHHHHHHHCCCcccccCCC
Confidence            88887665   5788888888888763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=1.9e-14  Score=139.05  Aligned_cols=90  Identities=22%  Similarity=0.240  Sum_probs=71.9

Q ss_pred             ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 044158          699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA  778 (892)
Q Consensus       699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls  778 (892)
                      +|+.|++++|.+++..+..++.+++|++|+|++|++++..+..++.+++|+.|++++|++++..+..+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            46666666777665555567788888888888888887777778888899999999999986666667888889999999


Q ss_pred             CCcccccCCc
Q 044158          779 HNNLSGKIPE  788 (892)
Q Consensus       779 ~N~l~g~ip~  788 (892)
                      +|+++|.+|.
T Consensus       133 ~N~~~~~~~~  142 (177)
T 2o6r_A          133 TNPWDCSCPR  142 (177)
T ss_dssp             SSCBCCCHHH
T ss_pred             CCCeeccCcc
Confidence            9999887764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.55  E-value=1.6e-13  Score=150.92  Aligned_cols=102  Identities=15%  Similarity=0.083  Sum_probs=58.0

Q ss_pred             hhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCC
Q 044158          399 IGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTK  478 (892)
Q Consensus       399 ~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  478 (892)
                      .+..+.+|+.+.+..+ +..+...+|.++.+|+.+++.++ ++ .|+...|.+|.+|+.+.+..+ ++.+...+|.+|++
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN  367 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence            3334555665555443 33344455666666666666533 44 566666666666666666554 55455566666777


Q ss_pred             CcEEeecCccCcCCCCcccccCCCCcEE
Q 044158          479 LKRLNLDGNHFIGGIPESLSNCSSLQGL  506 (892)
Q Consensus       479 L~~L~L~~n~~~~~~~~~~~~l~~L~~L  506 (892)
                      |+.+++..+- . .+..+|.+|++|+.+
T Consensus       368 L~~i~lp~~~-~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          368 LKKVELPKRL-E-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred             CCEEEECCCC-E-EhhheecCCCCCcEE
Confidence            7777765542 2 234456667666653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.55  E-value=6.5e-14  Score=153.11  Aligned_cols=249  Identities=11%  Similarity=0.069  Sum_probs=155.2

Q ss_pred             hhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCC
Q 044158          348 SWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDM  427 (892)
Q Consensus       348 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l  427 (892)
                      ...|.++ +|+.+.+..+ ++......|..+ +|+.+.+.. .++ .++...|..+++|+.+++..|.++.....+|. .
T Consensus       129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~  202 (401)
T 4fdw_A          129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-Y  202 (401)
T ss_dssp             TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-T
T ss_pred             HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-e
Confidence            3334443 4666665544 444444444443 466666654 343 45555555566666666666666654445554 4


Q ss_pred             CCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEE
Q 044158          428 NSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLY  507 (892)
Q Consensus       428 ~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  507 (892)
                      .+|+.+.+..+ ++ .|+...|.++++|+.+++..+ ++.+....|.+ .+|+.+.+. +.++...+.+|.+|++|+.++
T Consensus       203 ~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~  277 (401)
T 4fdw_A          203 AGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVT  277 (401)
T ss_dssp             CCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEE
T ss_pred             cccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEE
Confidence            56666666633 44 566666666666666666653 44444555555 567777773 334444456677777777777


Q ss_pred             ccCCcCC-----CCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEcc
Q 044158          508 ISDNDIS-----GSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLC  582 (892)
Q Consensus       508 L~~n~l~-----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~  582 (892)
                      +.+|.+.     ...+.+|.+|++|+.+.+.+ .++.....+|.++.+|+.++|..+ ++.+ -..+|.+| +|+.+++.
T Consensus       278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I-~~~aF~~~-~L~~l~l~  353 (401)
T 4fdw_A          278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI-NFSAFNNT-GIKEVKVE  353 (401)
T ss_dssp             EESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE-CTTSSSSS-CCCEEEEC
T ss_pred             eCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE-cHHhCCCC-CCCEEEEc
Confidence            7766554     34456777777888888773 466566667888888888888554 5442 24678888 88888888


Q ss_pred             CCccCccCChhhhcCC-CCCEEeccccccc
Q 044158          583 NNRLNGNIPNWMGRLS-QLRYLILANNNFE  611 (892)
Q Consensus       583 ~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~  611 (892)
                      +|.+....+..|.+++ +++.|++..+.+.
T Consensus       354 ~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          354 GTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             CCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            8887766666777774 7888888877654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.53  E-value=2.5e-13  Score=149.43  Aligned_cols=146  Identities=14%  Similarity=0.068  Sum_probs=98.1

Q ss_pred             CCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCc
Q 044158          374 PTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF  453 (892)
Q Consensus       374 ~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~  453 (892)
                      .+..+..++.+.+..+..  .+....+..+..++.+......+   ....|..+.+|+.+.+.++ ++ .|+...|.++.
T Consensus       248 ~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~  320 (394)
T 4fs7_A          248 VFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCT  320 (394)
T ss_dssp             TTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CC-EECTTTTTTCT
T ss_pred             cccccccceeEEcCCCcc--eeeccccccccccceeccCceee---ccccccccccccccccccc-cc-eechhhhcCCC
Confidence            334444555555544422  33444445566777776665543   2346778888888888765 55 77778888888


Q ss_pred             cCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEE
Q 044158          454 NLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAI  530 (892)
Q Consensus       454 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  530 (892)
                      +|+.+++..+ ++.+...+|.+|++|+.+.+..+ ++.....+|.+|++|+.+++..+ +. .+..+|.++++|+.+
T Consensus       321 ~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          321 SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            8888888644 66666778888888888888766 55455678888888888888754 22 334577788877764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=4.9e-16  Score=153.20  Aligned_cols=153  Identities=22%  Similarity=0.298  Sum_probs=110.1

Q ss_pred             CCCCccEEEccCCccCccCCh------hhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCC
Q 044158          572 KCSYLLTLDLCNNRLNGNIPN------WMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNT  645 (892)
Q Consensus       572 ~~~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~  645 (892)
                      ....++.++++.+.+.+..|.      .+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+.. 
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-   91 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV-   91 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc-
Confidence            344555555555555555554      77778888888888888875 56 7777888888888888876 45432221 


Q ss_pred             cccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCC
Q 044158          646 SLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIH  725 (892)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  725 (892)
                                                                         +++|+.|++++|++++ +| .++.+++|+
T Consensus        92 ---------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~  118 (198)
T 1ds9_A           92 ---------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVNLR  118 (198)
T ss_dssp             ---------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHSS
T ss_pred             ---------------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCCCC
Confidence                                                               2357788888888875 45 688888899


Q ss_pred             EEEccCccCCcccc-ccccCCCCCCEEECCCCcCcccCCcc----------ccCCCCCCEEEccCCccc
Q 044158          726 TLNLSRNNLTGTIP-VTFSNLRQVESLDLSYNNLTGKIPPR----------LVELNALAVFTVAHNNLS  783 (892)
Q Consensus       726 ~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~g~ip~~----------l~~l~~L~~l~ls~N~l~  783 (892)
                      .|++++|++++..+ ..+..+++|+.|++++|++++.+|..          +..+++|+.||  +|.++
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            99999998885433 47888889999999999888776653          77888888887  56554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.49  E-value=1.8e-13  Score=132.12  Aligned_cols=130  Identities=25%  Similarity=0.273  Sum_probs=72.2

Q ss_pred             cEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEcc
Q 044158          382 IALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS  461 (892)
Q Consensus       382 ~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~  461 (892)
                      +.+++++++++ .+|..+   .++|++|++++|++.+..+..|..+++|++|++++|+++ .++...+..+++|++|+++
T Consensus        10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECC
Confidence            45555555555 455433   356666666666666555555666666666666666665 4554444455555555555


Q ss_pred             CCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCC
Q 044158          462 NNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGS  516 (892)
Q Consensus       462 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  516 (892)
                      +|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++.+.
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            5555554444455555555555555555544333444555555555555555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=1.9e-13  Score=130.51  Aligned_cols=109  Identities=24%  Similarity=0.278  Sum_probs=72.2

Q ss_pred             cceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccC
Q 044158          700 IHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAH  779 (892)
Q Consensus       700 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~  779 (892)
                      .+.+++++|.++ .+|..+.  ++|+.|+|++|+|++..|..|+++++|+.|||++|+|++..|..+..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            345677777766 3555543  5667777777777766666677777777777777777765555566677777777777


Q ss_pred             CcccccCCccccccCCCCcccccCCCCCCCCC
Q 044158          780 NNLSGKIPERIAQFATFDEDSYEGNPFLCGPP  811 (892)
Q Consensus       780 N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~  811 (892)
                      |++++..|..+..+..+....+.+||+.|.|+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            77776555545566666666677777766653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=2e-13  Score=131.52  Aligned_cols=110  Identities=18%  Similarity=0.144  Sum_probs=48.1

Q ss_pred             cccCCCcEEeecCccCcCCCCcccccC-CCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCc
Q 044158          474 INLTKLKRLNLDGNHFIGGIPESLSNC-SSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE  552 (892)
Q Consensus       474 ~~l~~L~~L~L~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  552 (892)
                      ..+++|+.|++++|.+.. +|. +..+ ++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            344555555555555552 232 2222 2555555555555432  3344444444444444444433222234444444


Q ss_pred             EEeCCCCccCCCcccccccCCCCccEEEccCCccC
Q 044158          553 ILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLN  587 (892)
Q Consensus       553 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~  587 (892)
                      +|++++|+++.++....+..+++|+.|++++|.++
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence            44444444432111113444444444444444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.43  E-value=4.6e-13  Score=127.86  Aligned_cols=90  Identities=22%  Similarity=0.227  Sum_probs=84.3

Q ss_pred             ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 044158          699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA  778 (892)
Q Consensus       699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls  778 (892)
                      .++.|+|++|++++..|..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..|..+..+++|++|+++
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            58889999999999889999999999999999999998888889999999999999999998877789999999999999


Q ss_pred             CCcccccCCc
Q 044158          779 HNNLSGKIPE  788 (892)
Q Consensus       779 ~N~l~g~ip~  788 (892)
                      +|++++..+.
T Consensus       111 ~N~~~c~c~~  120 (170)
T 3g39_A          111 NNPWDCACSD  120 (170)
T ss_dssp             SSCBCTTBGG
T ss_pred             CCCCCCCchh
Confidence            9999988764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.43  E-value=2.2e-13  Score=131.25  Aligned_cols=135  Identities=21%  Similarity=0.238  Sum_probs=114.6

Q ss_pred             cccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCC
Q 044158          495 ESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCS  574 (892)
Q Consensus       495 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  574 (892)
                      ..+.++.+|++|++++|+++.. |......++|+.|++++|.+++.  ..+..+++|++|++++|+++++ .+..+..++
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~   88 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRI-GEGLDQALP   88 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEE-CSCHHHHCT
T ss_pred             HhcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccccc-CcchhhcCC
Confidence            3467889999999999999954 54333344999999999999875  6789999999999999999973 245568999


Q ss_pred             CccEEEccCCccCccCCh--hhhcCCCCCEEecccccccccCCcc----ccCCCCCCEEEcCCCcCC
Q 044158          575 YLLTLDLCNNRLNGNIPN--WMGRLSQLRYLILANNNFEGEVPLR----LCQLQKLRLLDLSHNNFS  635 (892)
Q Consensus       575 ~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~  635 (892)
                      +|++|++++|+++ .+|.  .+..+++|+.|++++|+++ .+|..    +..+++|+.||+++|...
T Consensus        89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999999999996 4565  7899999999999999998 45664    889999999999999865

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.42  E-value=5.1e-13  Score=127.95  Aligned_cols=107  Identities=20%  Similarity=0.243  Sum_probs=64.1

Q ss_pred             ceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCC
Q 044158          701 HGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHN  780 (892)
Q Consensus       701 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N  780 (892)
                      +.+++++|+++ .+|..+.  ++|+.|+|++|+|++.+|..|+++++|+.|+|++|+|++..+..+..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            34666666664 4555443  55666666666666666666666666666666666666544444566666666666666


Q ss_pred             cccccCCccccccCCCCcccccCCCCCCCC
Q 044158          781 NLSGKIPERIAQFATFDEDSYEGNPFLCGP  810 (892)
Q Consensus       781 ~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~  810 (892)
                      ++++..|..+..+..+....+.+||+.|.|
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            666554444455555556666666666654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=1.9e-15  Score=149.02  Aligned_cols=132  Identities=25%  Similarity=0.258  Sum_probs=91.1

Q ss_pred             ccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCC
Q 044158          496 SLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSY  575 (892)
Q Consensus       496 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~  575 (892)
                      .+..+++|++|++++|++++ +| .+..+++|+.|++++|.++ .+|..+..+++|++|++++|+++++  | .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l--~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--S-GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH--H-HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC--C-ccccCCC
Confidence            55556666666666666554 33 5555566666666666665 4555566667788888888888763  3 5777788


Q ss_pred             ccEEEccCCccCccCC-hhhhcCCCCCEEecccccccccCCcc----------ccCCCCCCEEEcCCCcCC
Q 044158          576 LLTLDLCNNRLNGNIP-NWMGRLSQLRYLILANNNFEGEVPLR----------LCQLQKLRLLDLSHNNFS  635 (892)
Q Consensus       576 L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~----------~~~l~~L~~L~Ls~N~l~  635 (892)
                      |++|++++|++++..+ ..+..+++|++|++++|++.+..|..          +..+++|+.||  +|.++
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            8888888888875332 46778888888888888887765542          67888888887  66665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=1.4e-12  Score=124.98  Aligned_cols=90  Identities=22%  Similarity=0.265  Sum_probs=82.9

Q ss_pred             ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 044158          699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA  778 (892)
Q Consensus       699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls  778 (892)
                      .|+.|+|++|++++..|..|+.+++|+.|+|++|+|++..+..|+++++|+.|||++|+|++..|..+..+++|++|+++
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            58899999999999889999999999999999999998777778999999999999999997777779999999999999


Q ss_pred             CCcccccCCc
Q 044158          779 HNNLSGKIPE  788 (892)
Q Consensus       779 ~N~l~g~ip~  788 (892)
                      +|++.+..+.
T Consensus       114 ~N~~~c~~~~  123 (174)
T 2r9u_A          114 NNPWDCECRD  123 (174)
T ss_dssp             SSCBCTTBGG
T ss_pred             CCCccccccc
Confidence            9999976653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.26  E-value=9.6e-12  Score=134.40  Aligned_cols=107  Identities=16%  Similarity=0.208  Sum_probs=74.7

Q ss_pred             eeeccCc-cccccCCccccccCCCCEEEccC-ccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccC
Q 044158          702 GLDLSCN-KLIGEIPSRIGELIRIHTLNLSR-NNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAH  779 (892)
Q Consensus       702 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~  779 (892)
                      .++++++ +++ .+|. ++.+++|+.|+|++ |+|++..|..|+++++|+.|||++|+|++.+|..|.++++|+.|||++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3566766 676 4666 77777777777775 777776667777777777777777777777777777777777777777


Q ss_pred             CcccccCCccccccCCCCcccccCCCCCCCCC
Q 044158          780 NNLSGKIPERIAQFATFDEDSYEGNPFLCGPP  811 (892)
Q Consensus       780 N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~  811 (892)
                      |+|++..|..+..+. +....+.+|++.|.|.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence            777765554333332 6666777777777664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.24  E-value=2.5e-10  Score=125.45  Aligned_cols=258  Identities=12%  Similarity=0.092  Sum_probs=126.1

Q ss_pred             hhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCC
Q 044158          351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSL  430 (892)
Q Consensus       351 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L  430 (892)
                      +..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++ .+....|. ...|+.+.+..+-. .....+|..+.++
T Consensus       133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l  207 (394)
T 4gt6_A          133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFAL  207 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTC
T ss_pred             hhhhcccccccccce-eeeecccceecccccccccccce-ee-Eecccccc-ccceeEEEECCccc-ccccchhhhcccc
Confidence            444555555555432 22223334444555555555433 22 34444443 34566666554322 2334455666666


Q ss_pred             cEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccC
Q 044158          431 IYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISD  510 (892)
Q Consensus       431 ~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~  510 (892)
                      +......+... .+...++........-.           ..+.....+..+.+... +......+|.+|..|+.+.+.+
T Consensus       208 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~  274 (394)
T 4gt6_A          208 STITSDSESYP-AIDNVLYEKSANGDYAL-----------IRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPD  274 (394)
T ss_dssp             CEEEECCSSSC-BSSSCEEEECTTSCEEE-----------EECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCT
T ss_pred             ceecccccccc-cccceeecccccccccc-----------cccccccccceEEcCCc-ceEcccceeeecccccEEeccc
Confidence            66555444332 22211111111000000           01111222333333221 2222334566666777766654


Q ss_pred             CcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccC
Q 044158          511 NDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNI  590 (892)
Q Consensus       511 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  590 (892)
                      +... ....+|.+++.|+.+.+. +.++.....+|.++.+|+.+++..+ ++.+. ..+|.+|.+|+.+.+..+ ++..-
T Consensus       275 ~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~-~~aF~~C~~L~~i~ip~s-v~~I~  349 (394)
T 4gt6_A          275 SVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQIL-DDAFAGCEQLERIAIPSS-VTKIP  349 (394)
T ss_dssp             TCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCEEEECTT-CCBCC
T ss_pred             ccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEeh-HhHhhCCCCCCEEEECcc-cCEEh
Confidence            4322 344556667777777775 3344444556777777888877654 43321 457888888888888654 55444


Q ss_pred             ChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcC
Q 044158          591 PNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNF  634 (892)
Q Consensus       591 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  634 (892)
                      ..+|.+|++|+.+++.++....   ..+..+.+|+.+.+..|.+
T Consensus       350 ~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          350 ESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             GGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             HhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            5678888888888888776542   3566777888887776654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.20  E-value=7.4e-10  Score=121.64  Aligned_cols=263  Identities=11%  Similarity=0.102  Sum_probs=139.6

Q ss_pred             cchhhhhcCC-CCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCc---CCCCCchhhhhcCCCCcEEECcCCcCCccCc
Q 044158          346 FPSWLLENNT-NLRSIILANNSLSGPFRLPTRSRKNIIALDISYNK---LQGHIPVEIGKVLPNLGFLTISFNAFNGSIP  421 (892)
Q Consensus       346 ~p~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~---l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p  421 (892)
                      ++...|.++. .|+++.+..+ ++.....+|.++.+|+.+.+..|.   ++ .|....|..+.+|+.+.+..+ ++....
T Consensus        54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~  130 (394)
T 4gt6_A           54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDS  130 (394)
T ss_dssp             ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred             cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehh
Confidence            4444455653 4777777653 555556667777777777776553   43 555666666677777666544 343455


Q ss_pred             hhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCC
Q 044158          422 SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCS  501 (892)
Q Consensus       422 ~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~  501 (892)
                      .+|..+.+|+.+.+..+ +. .++...|.++.+|+.+.+..+ ++.+....|.. ..|+.+.+..+-. .....+|..+.
T Consensus       131 ~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~  205 (394)
T 4gt6_A          131 EAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECF  205 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCT
T ss_pred             hhhhhhcccccccccce-ee-eecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhcc
Confidence            56777777777777644 33 566666667777777777654 33333444433 4677777655432 23345666677


Q ss_pred             CCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEc
Q 044158          502 SLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDL  581 (892)
Q Consensus       502 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L  581 (892)
                      +++.............-..+.........           ...+.....+..+.+... ++. .-..+|.+|..|+.+.+
T Consensus       206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ip~~-v~~-i~~~aF~~c~~L~~i~l  272 (394)
T 4gt6_A          206 ALSTITSDSESYPAIDNVLYEKSANGDYA-----------LIRYPSQREDPAFKIPNG-VAR-IETHAFDSCAYLASVKM  272 (394)
T ss_dssp             TCCEEEECCSSSCBSSSCEEEECTTSCEE-----------EEECCTTCCCSEEECCTT-EEE-ECTTTTTTCSSCCEEEC
T ss_pred             ccceecccccccccccceeeccccccccc-----------ccccccccccceEEcCCc-ceE-cccceeeecccccEEec
Confidence            77766655443321110001000000000           000111122333333211 111 11245666777777776


Q ss_pred             cCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCC
Q 044158          582 CNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSH  631 (892)
Q Consensus       582 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  631 (892)
                      ..+... .....|.++++|+.+.+. +.++......|.++.+|+.++|..
T Consensus       273 p~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~  320 (394)
T 4gt6_A          273 PDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE  320 (394)
T ss_dssp             CTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred             ccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC
Confidence            554332 344566667777777775 334434455666777777776643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.18  E-value=3.9e-11  Score=129.59  Aligned_cols=88  Identities=18%  Similarity=0.195  Sum_probs=80.3

Q ss_pred             ccceeeccC-ccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEc
Q 044158          699 SIHGLDLSC-NKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTV  777 (892)
Q Consensus       699 ~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~l  777 (892)
                      +|+.|+|++ |.|++..|..|+.+++|+.|+|++|+|++.+|..|+++++|+.|||++|+|++..|..+..++ |+.|++
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l  110 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL  110 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence            689999996 999988888999999999999999999999999999999999999999999977777777666 999999


Q ss_pred             cCCcccccCC
Q 044158          778 AHNNLSGKIP  787 (892)
Q Consensus       778 s~N~l~g~ip  787 (892)
                      ++|++.+...
T Consensus       111 ~~N~~~c~c~  120 (347)
T 2ifg_A          111 SGNPLHCSCA  120 (347)
T ss_dssp             CSSCCCCCGG
T ss_pred             eCCCccCCCc
Confidence            9999987544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.18  E-value=1.3e-12  Score=141.49  Aligned_cols=188  Identities=17%  Similarity=0.143  Sum_probs=91.3

Q ss_pred             CCCcEEECcCCcCccccchhHh----hcCccCcEEEccCCcccccccccc-cccCCCcEEeecCccCcCCCCccc-----
Q 044158          428 NSLIYLDLSNNQLTGEIPEHLA----MGCFNLEYLLLSNNSLQGQLFSKK-INLTKLKRLNLDGNHFIGGIPESL-----  497 (892)
Q Consensus       428 ~~L~~L~L~~n~l~~~i~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~-----  497 (892)
                      +.|+.|++++|.++..-...+.    ....+|++|+|++|.++......+ ..+++|+.|+|++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            4677777777777632222221    122466666666666654322222 223455555555555543222222     


Q ss_pred             ccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCC---cccccccCCC
Q 044158          498 SNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR---PLNGAFSKCS  574 (892)
Q Consensus       498 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~~~~  574 (892)
                      ...++|++|+|++|.++.....                    .++..+...++|++|+|++|.++..   .+...+..++
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~--------------------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~  211 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVA--------------------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR  211 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHH--------------------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred             hcCCccceeeCCCCCCChHHHH--------------------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence            1234444444444444321000                    1223334555666666666665431   1233455566


Q ss_pred             CccEEEccCCccCcc----CChhhhcCCCCCEEecccccccccCCccccCC---C--CCCEEE--cCCCcCC
Q 044158          575 YLLTLDLCNNRLNGN----IPNWMGRLSQLRYLILANNNFEGEVPLRLCQL---Q--KLRLLD--LSHNNFS  635 (892)
Q Consensus       575 ~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~--~L~~L~--Ls~N~l~  635 (892)
                      +|++|+|++|.+++.    ++..+...++|++|+|++|.++......+..+   .  .|+.+.  +..|.++
T Consensus       212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            677777777776643    23344456777777777777765444333332   1  155555  5555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.17  E-value=2.2e-12  Score=139.64  Aligned_cols=113  Identities=18%  Similarity=0.132  Sum_probs=70.1

Q ss_pred             CCCCcEEECcCCcCCccCchhcc-----CCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccc----
Q 044158          403 LPNLGFLTISFNAFNGSIPSSFG-----DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKK----  473 (892)
Q Consensus       403 l~~L~~L~L~~n~~~~~~p~~~~-----~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----  473 (892)
                      .+.|+.|++++|.++......+.     ..++|++|+|++|.+++.....+...+++|+.|+|++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            35666777777766543333322     225777777777777644344444455677778888777765443333    


Q ss_pred             -cccCCCcEEeecCccCcCC----CCcccccCCCCcEEEccCCcCCC
Q 044158          474 -INLTKLKRLNLDGNHFIGG----IPESLSNCSSLQGLYISDNDISG  515 (892)
Q Consensus       474 -~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~  515 (892)
                       ...++|++|+|++|.++..    ++..+..+++|++|+|++|.+++
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~  197 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD  197 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc
Confidence             2356788888888877542    23444667778888888777653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.93  E-value=4.3e-08  Score=106.98  Aligned_cols=292  Identities=11%  Similarity=0.044  Sum_probs=190.5

Q ss_pred             ccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcC
Q 044158          324 KFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVL  403 (892)
Q Consensus       324 ~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l  403 (892)
                      +|.....+|+.+.+.+.  ...++...|.+|.+|+++.+..+ ++......|..+ +|+.+.+..+ ++ .+....|. .
T Consensus        40 ~~~~~~~~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~-~  112 (379)
T 4h09_A           40 PWYKDRDRISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQ-G  112 (379)
T ss_dssp             TTGGGGGGCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTT-T
T ss_pred             cccccccCCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceec-c
Confidence            34445566777766532  23566666888888998888754 555556667666 5777777643 43 56666666 3


Q ss_pred             CCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccc------------cccc
Q 044158          404 PNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG------------QLFS  471 (892)
Q Consensus       404 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~------------~~~~  471 (892)
                      .+|+.+.+..+ +.......|.++ +++.+.+..+ ++ .+....|..+..++...+..+....            ....
T Consensus       113 ~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (379)
T 4h09_A          113 TDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE  188 (379)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE
T ss_pred             CCcccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceec
Confidence            47888888765 333444455554 5666665543 33 5555666677788877776543221            1122


Q ss_pred             cccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCC
Q 044158          472 KKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYL  551 (892)
Q Consensus       472 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  551 (892)
                      .+.....+..+.+.... .......+..+.+|+.+.+..+ +......++..+..|+.+.+..+ ++.....+|.++.+|
T Consensus       189 ~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l  265 (379)
T 4h09_A          189 SYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL  265 (379)
T ss_dssp             ECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred             cccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence            33445555555554432 2233456677788888887654 34344567788888888888765 554556678888889


Q ss_pred             cEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCC
Q 044158          552 EILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSH  631 (892)
Q Consensus       552 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  631 (892)
                      +.+.+..+ ++.+ -..+|.+|++|+.+.+.++.++..-...|.++++|+.+.|..+ ++.....+|.++++|+.+.+..
T Consensus       266 ~~i~l~~~-i~~i-~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          266 KTLNFYAK-VKTV-PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CEEEECCC-CSEE-CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             cccccccc-ceec-cccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            98888654 3331 2457888999999999888887666678888999999999754 5545566788888898887754


Q ss_pred             C
Q 044158          632 N  632 (892)
Q Consensus       632 N  632 (892)
                      +
T Consensus       343 ~  343 (379)
T 4h09_A          343 S  343 (379)
T ss_dssp             T
T ss_pred             c
Confidence            4

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.84  E-value=1.8e-07  Score=102.12  Aligned_cols=142  Identities=16%  Similarity=0.121  Sum_probs=69.5

Q ss_pred             cCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEE
Q 044158          451 GCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAI  530 (892)
Q Consensus       451 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  530 (892)
                      .+.+|+.+.+..+ +.......|.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +......+|..+++|+.+
T Consensus       215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i  291 (379)
T 4h09_A          215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV  291 (379)
T ss_dssp             TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred             cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence            3444444444322 22233334444555555555443 22233344555555555555432 332333445555566666


Q ss_pred             ECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCC
Q 044158          531 IMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLS  598 (892)
Q Consensus       531 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~  598 (892)
                      .+.++.++.....+|.++.+|+.++|..+ ++.+. ..+|.+|++|+.+.+..+ ++..-..+|.+++
T Consensus       292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~-~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQ-VYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             cccccccceehhhhhcCCCCCCEEEcCcc-ccEEH-HHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            65555555444555666666666666543 33211 346666777777666544 4433344555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.79  E-value=2.3e-09  Score=114.65  Aligned_cols=82  Identities=15%  Similarity=0.231  Sum_probs=49.0

Q ss_pred             CccceeeccCccccccCCcccc---ccCCCCEEEccCccCCcc----ccccccCCCCCCEEECCCCcCcccCCccccC-C
Q 044158          698 ESIHGLDLSCNKLIGEIPSRIG---ELIRIHTLNLSRNNLTGT----IPVTFSNLRQVESLDLSYNNLTGKIPPRLVE-L  769 (892)
Q Consensus       698 ~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~-l  769 (892)
                      ++|+.|+|++|.+.+..+..+.   .+++|++|+|+.|.+++.    ++..+.++++|+.|+|++|.++...-..+.. +
T Consensus       252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al  331 (362)
T 2ra8_A          252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL  331 (362)
T ss_dssp             TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred             CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence            3566666666666543333322   466778888888777753    3334455678888888888777443333332 2


Q ss_pred             CCCCEEEccCCc
Q 044158          770 NALAVFTVAHNN  781 (892)
Q Consensus       770 ~~L~~l~ls~N~  781 (892)
                        ...++++.|+
T Consensus       332 --g~~~~~~~~~  341 (362)
T 2ra8_A          332 --PMKIDVSDSQ  341 (362)
T ss_dssp             --CSEEECCSBC
T ss_pred             --CCEEEecCCc
Confidence              3557777776

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.71  E-value=1.2e-09  Score=110.51  Aligned_cols=85  Identities=28%  Similarity=0.297  Sum_probs=47.0

Q ss_pred             cCCCCCCEEecCCccccc--CCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCc-----ccc
Q 044158           98 AGLSSLKNLSLAYNRLEG--SINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGS-----KVL  170 (892)
Q Consensus        98 ~~l~~L~~L~Ls~n~l~~--~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-----~~~  170 (892)
                      .++++|++|+|++|.+++  .++. .+..+++|++|+|++|.+++......+..+ +|++|+|++|.+.+..     ...
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence            356666666666666653  2222 445666666666666666655211223333 6777777777765420     011


Q ss_pred             ccccCCCCCCEEEC
Q 044158          171 HSIGSFPSLKTLYL  184 (892)
Q Consensus       171 ~~l~~l~~L~~L~L  184 (892)
                      ..+..+++|+.||-
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence            23566777777753

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.71  E-value=8.4e-09  Score=110.34  Aligned_cols=137  Identities=17%  Similarity=0.172  Sum_probs=74.9

Q ss_pred             ccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCccccc--CCCCCcEEeCCC--CccCCC----ccc
Q 044158          496 SLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFC--QLDYLEILDLSK--NNIAGR----PLN  567 (892)
Q Consensus       496 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~--n~l~~~----~~~  567 (892)
                      .+..+++|+.|++++|.-. .++. +. .++|+.|++..+.+.......+.  .+++|++|+|+.  |...+.    .+.
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            3344555555555554211 1111 22 45666666665555433222332  566677776642  111110    011


Q ss_pred             ccc--cCCCCccEEEccCCccCccCChhhh---cCCCCCEEeccccccccc----CCccccCCCCCCEEEcCCCcCC
Q 044158          568 GAF--SKCSYLLTLDLCNNRLNGNIPNWMG---RLSQLRYLILANNNFEGE----VPLRLCQLQKLRLLDLSHNNFS  635 (892)
Q Consensus       568 ~~~--~~~~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~  635 (892)
                      ..+  ..+++|++|+|++|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            122  2467888888888877654433332   467888888888887753    2333455688888888888776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.45  E-value=4e-08  Score=94.72  Aligned_cols=65  Identities=11%  Similarity=0.090  Sum_probs=28.9

Q ss_pred             CCCCCEEeCCCCCCCCcc---ccccccCCCCCcEEeC--CCCcCCCCc--cccccccCCCCCCEEECCCCCC
Q 044158          125 LSNLEGLDMSDNEIDNLV---VPKDYRGLRKLRFLDL--SGLRIRDGS--KVLHSIGSFPSLKTLYLKSNNF  189 (892)
Q Consensus       125 l~~L~~L~L~~n~i~~~~---~~~~~~~l~~L~~L~L--~~n~i~~~~--~~~~~l~~l~~L~~L~L~~n~l  189 (892)
                      .++|++|+|++|.|....   ....+...+.|++|+|  ++|.+.+..  .+...+...+.|++|++++|.+
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            344444444444444321   1122344445555555  445544321  1223344445566666666544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.28  E-value=6.1e-07  Score=90.60  Aligned_cols=67  Identities=22%  Similarity=0.292  Sum_probs=42.0

Q ss_pred             cccCCCCEEEccCccCCc--cccccccCCCCCCEEECCCCcCcccCCccccCCC--CCCEEEccCCcccccCC
Q 044158          719 GELIRIHTLNLSRNNLTG--TIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELN--ALAVFTVAHNNLSGKIP  787 (892)
Q Consensus       719 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~--~L~~l~ls~N~l~g~ip  787 (892)
                      .++++|++|+|++|+|++  .+|..++.+++|+.|||++|+|++.  ..+..+.  .|+.|++++|++++.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            455667777777777766  3445556667777777777777654  2333333  67777777777766655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.24  E-value=3.2e-07  Score=88.30  Aligned_cols=91  Identities=12%  Similarity=0.116  Sum_probs=47.0

Q ss_pred             ccCCCCCcEEeCCCCccCCC---cccccccCCCCccEEEccCCccCcc----CChhhhcCCCCCEEec--ccccccccC-
Q 044158          545 FCQLDYLEILDLSKNNIAGR---PLNGAFSKCSYLLTLDLCNNRLNGN----IPNWMGRLSQLRYLIL--ANNNFEGEV-  614 (892)
Q Consensus       545 ~~~l~~L~~L~Ls~n~l~~~---~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L--~~n~l~~~~-  614 (892)
                      +...++|++|+|++|.+...   .+...+...++|++|+|++|.+...    +...+...++|++|+|  ++|.+.... 
T Consensus        61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~  140 (185)
T 1io0_A           61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  140 (185)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence            33344555555555554321   1122334445566666666655532    2334445566666666  556665332 


Q ss_pred             ---CccccCCCCCCEEEcCCCcCC
Q 044158          615 ---PLRLCQLQKLRLLDLSHNNFS  635 (892)
Q Consensus       615 ---~~~~~~l~~L~~L~Ls~N~l~  635 (892)
                         ...+...++|++|+|++|.+.
T Consensus       141 ~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          141 MEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCcCEEeccCCCCC
Confidence               233444567777777777654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.89  E-value=3.1e-06  Score=78.97  Aligned_cols=83  Identities=17%  Similarity=0.307  Sum_probs=37.1

Q ss_pred             CCCEEeCCCCCCCCcccccccCCCCCCEEecCCcc-cccCCChhhhcCC----CCCCEEeCCCCC-CCCccccccccCCC
Q 044158           78 NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNR-LEGSINIEELDSL----SNLEGLDMSDNE-IDNLVVPKDYRGLR  151 (892)
Q Consensus        78 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~-l~~~i~~~~l~~l----~~L~~L~L~~n~-i~~~~~~~~~~~l~  151 (892)
                      .|++||+++|.+++.....+.++++|++|+|++|. ++ .-....+..+    ++|++|+|++|. +++..... +.+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It-D~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-L~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE-DGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA-LHHFR  139 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC-HHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-GGGCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC-HHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-HhcCC
Confidence            34455555554444444444455555555555543 22 1111123332    245555555543 44433222 44555


Q ss_pred             CCcEEeCCCCc
Q 044158          152 KLRFLDLSGLR  162 (892)
Q Consensus       152 ~L~~L~L~~n~  162 (892)
                      +|++|+++++.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            55555555553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.86  E-value=2.2e-06  Score=79.91  Aligned_cols=87  Identities=20%  Similarity=0.332  Sum_probs=64.1

Q ss_pred             CCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCC-CCCcccccccCC----CCCCEEecCCcc-cccCCChhhh
Q 044158           49 QQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNS-FNNSVLSSLAGL----SSLKNLSLAYNR-LEGSINIEEL  122 (892)
Q Consensus        49 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~i~~~~l  122 (892)
                      .+|+.||++++.|+.    .++..+..+++|++|+|++|. +++.....++.+    ++|++|+|++|. ++ .-....+
T Consensus        61 ~~L~~LDLs~~~Itd----~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L  135 (176)
T 3e4g_A           61 YKIQAIDATDSCIMS----IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT-DKGIIAL  135 (176)
T ss_dssp             CCEEEEEEESCCCCG----GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC-HHHHHHG
T ss_pred             ceEeEEeCcCCCccH----HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC-HHHHHHH
Confidence            468889999887653    445667888899999999884 777666667764    478999998875 54 2233457


Q ss_pred             cCCCCCCEEeCCCCC-CCC
Q 044158          123 DSLSNLEGLDMSDNE-IDN  140 (892)
Q Consensus       123 ~~l~~L~~L~L~~n~-i~~  140 (892)
                      ..+++|++|++++|. +++
T Consensus       136 ~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          136 HHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GGCTTCCEEEEESCTTCCC
T ss_pred             hcCCCCCEEECCCCCCCCc
Confidence            788889999998885 554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.11  E-value=0.00022  Score=67.74  Aligned_cols=65  Identities=11%  Similarity=0.091  Sum_probs=29.8

Q ss_pred             CCCCCCEEeCCCCCCCCccc---cccccCCCCCcEEeCCCCc---CCCC--ccccccccCCCCCCEEECCCCC
Q 044158          124 SLSNLEGLDMSDNEIDNLVV---PKDYRGLRKLRFLDLSGLR---IRDG--SKVLHSIGSFPSLKTLYLKSNN  188 (892)
Q Consensus       124 ~l~~L~~L~L~~n~i~~~~~---~~~~~~l~~L~~L~L~~n~---i~~~--~~~~~~l~~l~~L~~L~L~~n~  188 (892)
                      .-+.|++|+|+.|.|.....   ..++..-+.|++|+|+++.   +...  ..+...+..-+.|++|+++.+.
T Consensus        96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A           96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            33445555555555543221   1223444456666665432   2211  1133344555666667666553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.02  E-value=0.00065  Score=60.33  Aligned_cols=58  Identities=29%  Similarity=0.334  Sum_probs=45.7

Q ss_pred             CEEEccCccCC-ccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccc
Q 044158          725 HTLNLSRNNLT-GTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSG  784 (892)
Q Consensus       725 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g  784 (892)
                      ..++-+++.++ ..+|..+.  .+|+.|||++|+|+..-+..|..+++|+.|+|++|++..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            47888999987 45665433  468999999999997767778888899998888887765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.67  E-value=0.0016  Score=61.88  Aligned_cols=42  Identities=17%  Similarity=0.247  Sum_probs=17.8

Q ss_pred             cCCCCCCCEEeCCCCCCCCcc----cccccCCCCCCEEecCCcccc
Q 044158           73 LSGLSNLKFLDLSHNSFNNSV----LSSLAGLSSLKNLSLAYNRLE  114 (892)
Q Consensus        73 ~~~l~~L~~L~Ls~n~i~~~~----~~~l~~l~~L~~L~Ls~n~l~  114 (892)
                      +..-+.|+.|+|++|+|.+..    .+.+..-+.|++|+|++|.|.
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            334444555555555444321    122223344455555544443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.62  E-value=0.0026  Score=56.45  Aligned_cols=56  Identities=23%  Similarity=0.280  Sum_probs=48.0

Q ss_pred             eeeccCcccc-ccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCc
Q 044158          702 GLDLSCNKLI-GEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLT  759 (892)
Q Consensus       702 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  759 (892)
                      .+|.++++++ ..+|..+.  .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            6899999997 46776544  36999999999999887888999999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	892
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-14
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-12
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-09
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	7e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	5e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.6 bits (226), Expect = 1e-20
 Identities = 61/292 (20%), Positives = 110/292 (37%), Gaps = 18/292 (6%)

Query: 356 NLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNA 415
           +LR +  ++  L    ++P     +   LD+  NK+      +    L NL  L +  N 
Sbjct: 11  HLRVVQCSDLGLE---KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNK 66

Query: 416 FNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKIN 475
            +   P +F  +  L  L LS NQL  E+PE +      L         ++  +F+  +N
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFN-GLN 124

Query: 476 LTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDN 535
              +  L  +     G    +      L  + I+D +I+        +++ L    +  N
Sbjct: 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH---LDGN 181

Query: 536 HLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMG 595
            +     +    L+ L  L LS N+I+    NG+ +   +L  L L NN+L   +P  + 
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNNKLV-KVPGGLA 239

Query: 596 RLSQLRYLILANNNFEG------EVPLRLCQLQKLRLLDLSHNNFS-GQIPP 640
               ++ + L NNN           P    +      + L  N     +I P
Sbjct: 240 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 291

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.8 bits (185), Expect = 2e-15
 Identities = 50/333 (15%), Positives = 98/333 (29%), Gaps = 46/333 (13%)

Query: 429 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNH 488
            L  +  S+  L  ++P+ L     +   L L NN +         NL  L  L L  N 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 489 FIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQL 548
                P + +    L+ LY+S N +          +  L    + +N +     S F  L
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKSVFNGL 123

Query: 549 DYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANN 608
                                      ++ L     + +G        + +L Y+ +A+ 
Sbjct: 124 -----------------------NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 160

Query: 609 NFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVS 668
           N      +       L  L L  N  +      L   +   +     L  ++ +   + +
Sbjct: 161 NIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK-----LGLSFNSISAVDN 212

Query: 669 YNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIG------EIPSRIGELI 722
            ++  +   +E      K           + I  + L  N +          P    +  
Sbjct: 213 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 272

Query: 723 RIHTLNLSRNNLTGT--IPVTFSNLRQVESLDL 753
               ++L  N +      P TF  +    ++ L
Sbjct: 273 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.1 bits (157), Expect = 8e-12
 Identities = 51/263 (19%), Positives = 91/263 (34%), Gaps = 14/263 (5%)

Query: 51  LESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAY 110
              LDL  N I    + +       L NL  L L +N  +     + A L  L+ L L+ 
Sbjct: 33  TALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 111 NRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVL 170
           N+L+             L+ L + +NEI  +     + GL ++  ++L    ++      
Sbjct: 89  NQLKELPE----KMPKTLQELRVHENEITKVRKS-VFNGLNQMIVVELGTNPLKSSGIEN 143

Query: 171 HSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLR 230
            +      L  + +   N      TT        L EL++D N         L  L +L 
Sbjct: 144 GAFQGMKKLSYIRIADTNI-----TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 231 VLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIF 290
            L +  N ++   + S        EL + +N   ++P  L        + + +   + I 
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 258

Query: 291 GEIESSHSSLTPKFQLTSISLSD 313
                     T K   + +SL  
Sbjct: 259 SNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.6 bits (148), Expect = 1e-10
 Identities = 42/313 (13%), Positives = 87/313 (27%), Gaps = 64/313 (20%)

Query: 477 TKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNH 536
                L+L  N           N  +L  L + +N IS   P     +  L+ + +  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 537 LEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGR 596
           L+         L  L + +     +     N        ++ L     + +G        
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 597 LSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDL 656
           + +L Y+ +A+ N      +       L  L L  N  +      L              
Sbjct: 149 MKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKG------------ 193

Query: 657 IPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPS 716
                                                   L ++  L LS N +      
Sbjct: 194 ----------------------------------------LNNLAKLGLSFNSISAVDNG 213

Query: 717 RIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG------KIPPRLVELN 770
            +     +  L+L+ N L   +P   ++ + ++ + L  NN++         P    +  
Sbjct: 214 SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 272

Query: 771 ALAVFTVAHNNLS 783
           + +  ++  N + 
Sbjct: 273 SYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.8 bits (146), Expect = 2e-10
 Identities = 50/295 (16%), Positives = 90/295 (30%), Gaps = 45/295 (15%)

Query: 177 PSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPD 236
           P    L L++N    T         L +L  L + +N      P   A L  L  L++  
Sbjct: 31  PDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 237 NQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESS 296
           NQL         M  T  EL +  N   ++  S+    N   +        +  G    +
Sbjct: 89  NQLK---ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

Query: 297 HSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTN 356
              +    +L+ I ++D                                 P  L     +
Sbjct: 146 FQGMK---KLSYIRIAD---------------------------TNITTIPQGLP---PS 172

Query: 357 LRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAF 416
           L  + L  N ++       +   N+  L +S+N +            P+L  L ++ N  
Sbjct: 173 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKL 231

Query: 417 NGSIPSSFGDMNSLIYLDLSNNQLTG-----EIPEHLAMGCFNLEYLLLSNNSLQ 466
              +P    D   +  + L NN ++        P        +   + L +N +Q
Sbjct: 232 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 9e-06
 Identities = 34/193 (17%), Positives = 60/193 (31%), Gaps = 6/193 (3%)

Query: 703 LDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKI 762
           LDL  NK+          L  +HTL L  N ++   P  F+ L ++E L LS N L    
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 95

Query: 763 PPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPP----LPKICNE 818
                 L  L V       +   +   + Q    +  +               + K+   
Sbjct: 96  EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 155

Query: 819 NRSSTEASTHDNEEDDNL--IDMDSFYITFTVSSVIVILGIIGVLWANPYWRHRWFYLVE 876
             + T  +T       +L  + +D   IT   ++ +  L  +  L  +            
Sbjct: 156 RIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 215

Query: 877 ILITSCYYFVVHN 889
                     ++N
Sbjct: 216 ANTPHLRELHLNN 228

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 708 NKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLV 767
           +  + ++P  +        L+L  N +T      F NL+ + +L L  N ++   P    
Sbjct: 19  DLGLEKVPKDLPPDTA--LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 76

Query: 768 ELNALAVFTVAHNNLSG 784
            L  L    ++ N L  
Sbjct: 77  PLVKLERLYLSKNQLKE 93

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 89.0 bits (219), Expect = 8e-20
 Identities = 60/295 (20%), Positives = 103/295 (34%), Gaps = 32/295 (10%)

Query: 522 GNISFLDAIIMPDNHLEG--PIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTL 579
                ++ + +   +L    PIPS    L YL  L +   N    P+  A +K + L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 580 DLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIP 639
            + +  ++G IP+++ ++  L  L  + N   G +P  +  L  L  +    N  SG IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 640 PCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLES 699
                 S       +  +   RN           ++                      + 
Sbjct: 167 D-----SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 700 IHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLT 759
                      +     ++G    ++ L+L  N + GT+P   + L+ + SL++S+NNL 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 760 GKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPK 814
           G+IP                                FD  +Y  N  LCG PLP 
Sbjct: 282 GEIPQ-------------------------GGNLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.9 bits (146), Expect = 2e-10
 Identities = 53/297 (17%), Positives = 97/297 (32%), Gaps = 36/297 (12%)

Query: 149 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQEL 208
              ++  LDLSGL +     +  S+ + P L  LY+              + +L  L  L
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI-GGINNLVGPIPPAIAKLTQLHYL 106

Query: 209 YIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPM 268
           YI H +  G++P  L+ + +L  L    N          +  L ++  +    N     +
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 269 SLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYH 328
                             N++ G+I  + ++L   F   S ++ +   S      K    
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 329 QHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISY 388
            H  +  +  D+   G   +                                    D+  
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGL--------------------------------DLRN 253

Query: 389 NKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIP 445
           N++ G +P  + + L  L  L +SFN   G IP   G++        +NN+     P
Sbjct: 254 NRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.9 bits (146), Expect = 2e-10
 Identities = 51/300 (17%), Positives = 86/300 (28%), Gaps = 39/300 (13%)

Query: 204 HLQELYIDHNDFIG--SLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSN 261
            +  L +   +      +P  LANL  L  L++             +  LT +  L +++
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 262 NHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGT 321
            +    +  +       L       N + G +  S SSL     +T       G+   G 
Sbjct: 111 TNVSGAIP-DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT-----FDGNRISGA 164

Query: 322 IPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNI 381
           IP        L   +    N        +     NL    +  +              + 
Sbjct: 165 IPDSYGSFSKLFTSMTISRN---RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 382 IALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLT 441
               I   K      +    +  NL  L +  N   G++P     +  L  L++S N L 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 442 GEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCS 501
           GEIP+                            NL +        N  + G P  L  C+
Sbjct: 282 GEIPQ--------------------------GGNLQRFDVSAYANNKCLCGSP--LPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.6 bits (140), Expect = 9e-10
 Identities = 64/270 (23%), Positives = 107/270 (39%), Gaps = 26/270 (9%)

Query: 298 SSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNL 357
            + T  +++ ++ LS         IP  L +  +L F+ I  +N         +   T L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 358 RSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFN 417
             + + + ++SG         K ++ LD SYN L G +P  I  + PNL  +T   N  +
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL-PNLVGITFDGNRIS 162

Query: 418 GSIPSSFGDMNSLIY-LDLSNNQLTGEIPE---------------------HLAMGCFNL 455
           G+IP S+G  + L   + +S N+LTG+IP                       +  G    
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 456 EYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISG 515
              +    +       K      L  L+L  N   G +P+ L+    L  L +S N++ G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 516 SIPTWMGNISFLDAIIMPDNHL--EGPIPS 543
            IP   GN+   D     +N      P+P+
Sbjct: 283 EIPQG-GNLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 77  SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDN 136
            NL  LDL +N    ++   L  L  L +L++++N L G   I +  +L   +    ++N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE--IPQGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 63/286 (22%), Positives = 100/286 (34%), Gaps = 51/286 (17%)

Query: 7   SDCCQ--WQSVLCNATTS--RVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIA 62
           +DCC   W  VLC+  T   RV  +DL  LN+     +  SL      L  L + G N  
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNL 89

Query: 63  GCVENEGLEKLSGLSN---------------------LKFLDLSHNSFNNSVLSSLAGLS 101
                  + KL+ L                       L  LD S+N+ + ++  S++ L 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 102 SLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVP----------------- 144
           +L  ++   NR+ G+I             + +S N +   + P                 
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML 209

Query: 145 --KDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCEL 202
                      +      L     +  L  +G   +L  L L++N    T+   QGL +L
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP--QGLTQL 267

Query: 203 AHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPL 248
             L  L +  N+  G +P    NL    V    +N+    L  SPL
Sbjct: 268 KFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC---LCGSPL 309

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.5 bits (207), Expect = 2e-18
 Identities = 54/264 (20%), Positives = 91/264 (34%), Gaps = 6/264 (2%)

Query: 373 LPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIY 432
           +P         + +  N++   +P    +   NL  L +  N       ++F  +  L  
Sbjct: 26  VPVGIPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ 84

Query: 433 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGG 492
           LDLS+N     +      G   L  L L    LQ         L  L+ L L  N     
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 493 IPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE 552
             ++  +  +L  L++  N IS         +  LD +++  N +    P  F  L  L 
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 553 ILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEG 612
            L L  NN+       A +    L  L L +N    +        + L+    +++    
Sbjct: 205 TLYLFANNL-SALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPC 262

Query: 613 EVPLRLCQLQKLRLLDLSHNNFSG 636
            +P R   L    L  L+ N+  G
Sbjct: 263 SLPQR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (169), Expect = 2e-13
 Identities = 54/269 (20%), Positives = 85/269 (31%), Gaps = 12/269 (4%)

Query: 493 IPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE 552
           +P  +   ++ Q +++  N IS            L  + +  N L     + F  L  LE
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 553 ILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEG 612
            LDLS N          F     L TL L    L    P     L+ L+YL L +N  + 
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 613 EVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDN-TSLHREEGYYDLIPTYRNEYDIVSYNV 671
                   L  L  L L  N  S           SL        L+   R  +       
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD-----RLLLHQNRVAHVHPHAFR 198

Query: 672 GPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSR 731
                    +         T    PL ++  L L+ N  + +  +R      +     S 
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSS 257

Query: 732 NNLTGTIPVTFSNLRQVESLDLSYNNLTG 760
           + +  ++P     L   +   L+ N+L G
Sbjct: 258 SEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (162), Expect = 1e-12
 Identities = 53/309 (17%), Positives = 86/309 (27%), Gaps = 58/309 (18%)

Query: 477 TKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNH 536
              +R+ L GN        S   C +L  L++  N ++         ++ L+ + + DN 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 537 LEGPI-PSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMG 595
               + P+ F  L  L  L L           G F   + L  L L +N L     +   
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 596 RLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYD 655
            L  L +L L  N            L  L  L L  N  +   P                
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF------------- 197

Query: 656 LIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIP 715
                                                  + L  +  L L  N L     
Sbjct: 198 ---------------------------------------RDLGRLMTLYLFANNLSALPT 218

Query: 716 SRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVF 775
             +  L  +  L L+ N               ++    S + +   +P RL   +   + 
Sbjct: 219 EALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRD---LK 274

Query: 776 TVAHNNLSG 784
            +A N+L G
Sbjct: 275 RLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 3e-11
 Identities = 45/274 (16%), Positives = 89/274 (32%), Gaps = 12/274 (4%)

Query: 242 NLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLT 301
            L + P+    + + + L  N      +   F     L I     N +     ++     
Sbjct: 22  GLQAVPVGIPAASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLARIDAAAF---- 76

Query: 302 PKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSII 361
               L                P   +    L  + +    ++   P         L+ + 
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL-FRGLAALQYLY 135

Query: 362 LANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIP 421
           L +N+L        R   N+  L +  N++   +P    + L +L  L +  N      P
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHP 194

Query: 422 SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKR 481
            +F D+  L+ L L  N L+  +P         L+YL L++N         +     L++
Sbjct: 195 HAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQK 252

Query: 482 LNLDGNHFIGGIPESLSNCSSLQGLYISDNDISG 515
                +     +P+ L+         ++ ND+ G
Sbjct: 253 FRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 5e-07
 Identities = 37/231 (16%), Positives = 65/231 (28%), Gaps = 5/231 (2%)

Query: 582 CNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPC 641
           C  +    +P  +      + + L  N             + L +L L  N  +      
Sbjct: 18  CPQQGLQAVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 642 LDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIH 701
               +L  +    D       +                 +D    +       + L ++ 
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLG---RLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 702 GLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGK 761
            L L  N L         +L  +  L L  N ++      F  L  ++ L L  N +   
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 762 IPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPL 812
            P    +L  L    +  NNLS    E +A            NP++C    
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 42/292 (14%), Positives = 86/292 (29%), Gaps = 39/292 (13%)

Query: 176 FPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVP 235
             + + ++L  N    +           +L  L++  N            L  L  L + 
Sbjct: 31  PAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 236 DNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIES 295
           DN    ++  +    L  +  L L     Q       F   + L+  + ++N +      
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP-GLFRGLAALQYLYLQDNALQ----- 142

Query: 296 SHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNT 355
                                              +L  + +   N     P        
Sbjct: 143 ------------------------ALPDDTFRDLGNLTHLFL-HGNRISSVPERAFRGLH 177

Query: 356 NLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNA 415
           +L  ++L  N ++       R    ++ L +  N     +P E    L  L +L ++ N 
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP 236

Query: 416 FNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG 467
           +     +       L     S++++   +P+ LA      +   L+ N LQG
Sbjct: 237 WVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA----GRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 49/263 (18%), Positives = 92/263 (34%), Gaps = 16/263 (6%)

Query: 51  LESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAY 110
            + + L GN I+               NL  L L  N       ++  GL+ L+ L L+ 
Sbjct: 34  SQRIFLHGNRISHVPAAS----FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 111 NRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVL 170
           N    S++      L  L  L +    +  L           L++L L    ++      
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL-AALQYLYLQDNALQALPD-- 146

Query: 171 HSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLR 230
            +     +L  L+L  N  +           L  L  L +  N      P    +L  L 
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERA--FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 231 VLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIF 290
            L++  N L+  L +  L  L +++ L L++N +       P + +  L+ F G  +++ 
Sbjct: 205 TLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW--LQKFRGSSSEVP 261

Query: 291 GEIESSHSSLTPKFQLTSISLSD 313
             +    +       L  ++ +D
Sbjct: 262 CSLPQRLAGR----DLKRLAAND 280

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 84.3 bits (207), Expect = 8e-18
 Identities = 64/393 (16%), Positives = 123/393 (31%), Gaps = 41/393 (10%)

Query: 401 KVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTG-EIPEHLAMGCFNLEYLL 459
             L       +       ++  +  D++ +  L      +   +  E+L     NL  + 
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDGVEYLN----NLTQIN 72

Query: 460 LSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPT 519
            SNN L      K  NLTKL  + ++ N      P +     +   L+ +       +  
Sbjct: 73  FSNNQLTDITPLK--NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 520 WMGN------------ISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLN 567
                           IS L  +        G   ++   L  L  L+    +       
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 190

Query: 568 GAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLL 627
              +K + L +L   NN+++   P  +   + L  L L  N  +      L  L  L  L
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDL 246

Query: 628 DLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKE 687
           DL++N  S   P            G   L         I + +    +     ++    +
Sbjct: 247 DLANNQISNLAPLS----------GLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 296

Query: 688 RSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQ 747
                    L+++  L L  N +    P  +  L ++  L  + N ++     + +NL  
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTN 352

Query: 748 VESLDLSYNNLTGKIPPRLVELNALAVFTVAHN 780
           +  L   +N ++   P  L  L  +    +   
Sbjct: 353 INWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.7 bits (203), Expect = 2e-17
 Identities = 83/384 (21%), Positives = 144/384 (37%), Gaps = 33/384 (8%)

Query: 182 LYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTE 241
             L   N   TV+ T    +L  +  L  D    I S+   +  L +L  ++  +NQLT 
Sbjct: 27  TVLGKTNVTDTVSQT----DLDQVTTLQADRLG-IKSIDG-VEYLNNLTQINFSNNQLT- 79

Query: 242 NLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLT 301
               +PL +LT +  ++++NN       L    N + L +F+ +   I      ++ +  
Sbjct: 80  --DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 137

Query: 302 PKFQLTSISLSDHGDSDGGTIPKFLYHQHH------LEFVIISDVNMRGEFPSWLLENNT 355
                T   +S            F            L  +   D++        +L   T
Sbjct: 138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 197

Query: 356 NLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNA 415
           NL S+I  NN +S     P     N+  L ++ N+L+    +     L NL  L ++ N 
Sbjct: 198 NLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQ 252

Query: 416 FNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKIN 475
            +   P     +  L  L L  NQ++   P        NLE      N  Q +  S   N
Sbjct: 253 ISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLEL-----NENQLEDISPISN 305

Query: 476 LTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDN 535
           L  L  L L  N+     P  +S+ + LQ L+ ++N +S    + + N++ ++ +    N
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 536 HLEGPIPSEFCQLDYLEILDLSKN 559
            +    P     L  +  L L+  
Sbjct: 362 QISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.0 bits (196), Expect = 2e-16
 Identities = 69/413 (16%), Positives = 125/413 (30%), Gaps = 48/413 (11%)

Query: 123 DSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTL 182
            +L+      +    + + V   D   L ++  L    L I+     +  +    +L  +
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGIKS----IDGVEYLNNLTQI 71

Query: 183 YLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTEN 242
              +N      T    L  L  L ++ +++N      P       +   L        + 
Sbjct: 72  NFSNNQL----TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 127

Query: 243 LSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTP 302
                               +      LE   N             +      +  +   
Sbjct: 128 ------------------LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK 169

Query: 303 KFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIIL 362
                +        S+  +    L    +LE +I ++  +    P       TNL  + L
Sbjct: 170 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG---ILTNLDELSL 226

Query: 363 ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPS 422
             N L     L   S  N+  LD++ N++    P+     L  L  L +  N  +   P 
Sbjct: 227 NGNQLKDIGTLA--SLTNLTDLDLANNQISNLAPLSG---LTKLTELKLGANQISNISP- 280

Query: 423 SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRL 482
               +  L  L                    NL YL L  N++     S   +LTKL+RL
Sbjct: 281 ----LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 334

Query: 483 NLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDN 535
               N        SL+N +++  L    N IS   P  + N++ +  + + D 
Sbjct: 335 FFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.2 bits (186), Expect = 3e-15
 Identities = 66/395 (16%), Positives = 132/395 (33%), Gaps = 35/395 (8%)

Query: 74  SGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDM 133
           + L+      L   +  ++V  S   L  +  L      ++   +I+ ++ L+NL  ++ 
Sbjct: 19  TALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINF 73

Query: 134 SDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTV 193
           S+N++ ++   K+   L  +   +     I   + + +  G       +         T 
Sbjct: 74  SNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 194 TTTQG-----LCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPL 248
                     + +++ L  L        G+    L  L +L  L   D    +    S L
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 249 MHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTS 308
             LT++E LI +NN       + P    + L       NQ+      +  +      L +
Sbjct: 194 AKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 250

Query: 309 ISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLS 368
             +S+            L     L  + +    +    P   L   TNL         +S
Sbjct: 251 NQISNLAP---------LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 301

Query: 369 GPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMN 428
               L      N+  L + +N +    PV     L  L  L  + N  +    SS  ++ 
Sbjct: 302 PISNLK-----NLTYLTLYFNNISDISPVS---SLTKLQRLFFANNKVSD--VSSLANLT 351

Query: 429 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN 463
           ++ +L   +NQ++   P         +  L L++ 
Sbjct: 352 NINWLSAGHNQISDLTPLA---NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.2 bits (186), Expect = 4e-15
 Identities = 72/398 (18%), Positives = 145/398 (36%), Gaps = 42/398 (10%)

Query: 48  FQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLS 107
             +     L   N+   V        + L  +  L        +  +  +  L++L  ++
Sbjct: 21  LAEKMKTVLGKTNVTDTV------SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 72

Query: 108 LAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGS 167
            + N+L     ++ L  L ++   +    +I  L    +  GL            +++ +
Sbjct: 73  FSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 168 KVLHSIGSFPSLKTL-------YLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP 220
            +     S  ++  +        L+  +F   VT  + L  L  L+ L I  N       
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--I 190

Query: 221 WCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLK 280
             LA LT+L  L   +NQ+++    +PL  LT+++ L L+ N  +   +L    N + L 
Sbjct: 191 SVLAKLTNLESLIATNNQISD---ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 247

Query: 281 IFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDV 340
           + +   NQI      S  +     +LT + L  +  S+       +     L  +   ++
Sbjct: 248 LAN---NQISNLAPLSGLT-----KLTELKLGANQISN-------ISPLAGLTALTNLEL 292

Query: 341 NMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIG 400
           N         + N  NL  + L  N++S     P  S   +  L  + NK+       + 
Sbjct: 293 NENQLEDISPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFANNKVSD--VSSLA 348

Query: 401 KVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNN 438
             L N+ +L+   N  +   P    ++  +  L L++ 
Sbjct: 349 N-LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.9 bits (141), Expect = 1e-09
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 45  FTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLK 104
            +  + L  L L  NNI        +  +S L+ L+ L  ++N    S +SSLA L+++ 
Sbjct: 303 ISNLKNLTYLTLYFNNI------SDISPVSSLTKLQRLFFANNKV--SDVSSLANLTNIN 354

Query: 105 NLSLAYNRLEGSINIEELDSLSNLEGLDMSDN 136
            LS  +N++        L +L+ +  L ++D 
Sbjct: 355 WLSAGHNQISDLT---PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.7 bits (138), Expect = 3e-09
 Identities = 48/185 (25%), Positives = 75/185 (40%), Gaps = 22/185 (11%)

Query: 29  LLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNS 88
           L  L++      +         L  LDL+ N I        L  LSGL+ L  L L  N 
Sbjct: 221 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQI------SNLAPLSGLTKLTELKLGANQ 274

Query: 89  FNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYR 148
            +N  +S LAGL++L NL L  N+LE    I  L    NL  L +  N I ++       
Sbjct: 275 ISN--ISPLAGLTALTNLELNENQLEDISPISNLK---NLTYLTLYFNNISDIS---PVS 326

Query: 149 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQEL 208
            L KL+ L  +  ++ D    + S+ +  ++  L    N      +    L  L  + +L
Sbjct: 327 SLTKLQRLFFANNKVSD----VSSLANLTNINWLSAGHNQI----SDLTPLANLTRITQL 378

Query: 209 YIDHN 213
            ++  
Sbjct: 379 GLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.2 bits (134), Expect = 8e-09
 Identities = 62/387 (16%), Positives = 129/387 (33%), Gaps = 48/387 (12%)

Query: 29  LLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNS 88
           + +L        +         L  ++ S N +        +  L  L+ L  + +++N 
Sbjct: 46  VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL------TDITPLKNLTKLVDILMNNNQ 99

Query: 89  FNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYR 148
             +                        +         + +  +D   N  +   +     
Sbjct: 100 IADI-----------------TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142

Query: 149 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQEL 208
            +  +  L       +       +     +  T   + +  +  V+    L +L +L+ L
Sbjct: 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 202

Query: 209 YIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPM 268
              +N      P     LT+L  L +  NQL +      L  LT++  L L+NN      
Sbjct: 203 IATNNQISDITPLG--ILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQIS--- 254

Query: 269 SLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYH 328
           +L P    +KL       NQI          ++P   LT+++  +  ++    I     +
Sbjct: 255 NLAPLSGLTKLTELKLGANQISN--------ISPLAGLTALTNLELNENQLEDISPI-SN 305

Query: 329 QHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISY 388
             +L ++ +   N+    P   + + T L+ +  ANN +S    L   +  NI  L   +
Sbjct: 306 LKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSDVSSL--ANLTNINWLSAGH 360

Query: 389 NKLQGHIPVEIGKVLPNLGFLTISFNA 415
           N++    P+     L  +  L ++  A
Sbjct: 361 NQISDLTPLAN---LTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 4e-06
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 8/107 (7%)

Query: 5   SYSDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGC 64
           +     +         +      +L  L +      + S  +   +L+ L  + N +   
Sbjct: 285 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKV--- 341

Query: 65  VENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYN 111
                +  L+ L+N+ +L   HN    S L+ LA L+ +  L L   
Sbjct: 342 ---SDVSSLANLTNINWLSAGHNQI--SDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 3e-05
 Identities = 37/244 (15%), Positives = 73/244 (29%), Gaps = 20/244 (8%)

Query: 553 ILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEG 612
              L K N+       + +    + TL      +  +I   +  L+ L  +  +NN    
Sbjct: 26  KTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTD 80

Query: 613 EVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVG 672
             PL    L KL  + +++N  +   P                +      +       + 
Sbjct: 81  ITPL--KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 138

Query: 673 PSMGEKETIDFTTKERSYTYKGQPLESIHGLDLS---------CNKLIGEIPSRIGELIR 723
            S      I   +   S        +      L+          +       S + +L  
Sbjct: 139 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 198

Query: 724 IHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
           + +L  + N ++   P+       ++ L L+ N L       L  L  L    +A+N +S
Sbjct: 199 LESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 254

Query: 784 GKIP 787
              P
Sbjct: 255 NLAP 258

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (175), Expect = 3e-14
 Identities = 44/278 (15%), Positives = 92/278 (33%), Gaps = 15/278 (5%)

Query: 384 LDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 443
           LD++   L   +   +  +   +       +  +  +   F     + ++DLSN+ +   
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVS 61

Query: 444 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIP--------E 495
               +   C  L+ L L    L   + +     + L RLNL G                 
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 496 SLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILD 555
            L   +       ++  +  ++      I+ L+      N  +  + +   +   L  LD
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 556 LSKNNIAGRPLNGAFSKCSYLLTLDLCN-NRLNGNIPNWMGRLSQLRYLILANNNFEGEV 614
           LS + +        F + +YL  L L     +       +G +  L+ L +     +G +
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 615 PLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEG 652
            L    L  L++     ++F+    P + N       G
Sbjct: 242 QLLKEALPHLQINC---SHFTTIARPTIGNKKNQEIWG 276

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 2e-10
 Identities = 48/239 (20%), Positives = 86/239 (35%), Gaps = 10/239 (4%)

Query: 532 MPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP 591
            P + ++ P+   F     ++ +DLS + I    L+G  S+CS L  L L   RL+  I 
Sbjct: 30  CPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV 88

Query: 592 NWMGRLSQLRYL--ILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHR 649
           N + + S L  L     +   E  +   L    +L  L+LS      +    +    +  
Sbjct: 89  NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 148

Query: 650 EEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHG---LDLS 706
                +L    +N        +         +D +          Q    ++    L LS
Sbjct: 149 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 208

Query: 707 -CNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPP 764
            C  +I E    +GE+  + TL +      GT+ +    L     L ++ ++ T    P
Sbjct: 209 RCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIARP 264

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 5e-07
 Identities = 23/172 (13%), Positives = 53/172 (30%), Gaps = 3/172 (1%)

Query: 703 LDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKI 762
           LDL+   L  ++  R+     +      R+ +   +   FS  R V+ +DLS + +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 763 PPRLVE-LNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENRS 821
              ++   + L   ++    LS  I   +A+ +     +  G        L  + +    
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 822 STEASTHDNEEDDNLIDMDSFYITFTVSSVIVILGIIGVLWANPYWRHRWFY 873
             E +     +        +        + + + G    L  +         
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 174

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 25/141 (17%), Positives = 52/141 (36%), Gaps = 5/141 (3%)

Query: 82  LDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNL 141
           LDL+  + +  V   L     +       + ++  +   E  S   ++ +D+S++ I+  
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNSVIEVS 61

Query: 142 VVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCE 201
            +        KL+ L L GLR+ D   +++++    +L  L L   +          L  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 202 LAHLQELYIDHNDFIGSLPWC 222
            + L EL +            
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQ 140

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 42/265 (15%), Positives = 84/265 (31%), Gaps = 12/265 (4%)

Query: 53  SLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNR 112
           +LDL+G N+   V    L +      +       +  +  +    +    ++++ L+ + 
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQ-----GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSV 57

Query: 113 LEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHS 172
           +E S     L   S L+ L +    + +  +         L  L+LSG        +   
Sbjct: 58  IEVSTLHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 116

Query: 173 IGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYI----DHNDFIGSLPWCLANLTS 228
           + S   L  L L              +  ++             N     L   +    +
Sbjct: 117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 176

Query: 229 LRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQ 288
           L  L + D+ + +N        L  ++ L LS  +  IP +L        LK        
Sbjct: 177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 236

Query: 289 IFGEIESSHSSLTPKFQLTSISLSD 313
             G ++    +L P  Q+     + 
Sbjct: 237 PDGTLQLLKEAL-PHLQINCSHFTT 260

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 37/219 (16%), Positives = 70/219 (31%), Gaps = 11/219 (5%)

Query: 49  QQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSS-LAGLSSLKNLS 107
           Q + +     + +        L +      ++ +DLS++    S L   L+  S L+NLS
Sbjct: 23  QGVIAFRCPRSFMDQP-----LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 77

Query: 108 LAYNRLEGSINIEELDSLSNLEGLDMSDNE-IDNLVVPKDYRGLRKLRFLDLSGLRIRDG 166
           L   RL   I +  L   SNL  L++S         +        +L  L+LS       
Sbjct: 78  LEGLRLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 136

Query: 167 SKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHND---FIGSLPWCL 223
             V  ++       T    S        +            +++D +D            
Sbjct: 137 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 196

Query: 224 ANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNN 262
             L  L+ L +         +   L  + +++ L +   
Sbjct: 197 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (162), Expect = 3e-12
 Identities = 51/444 (11%), Positives = 115/444 (25%), Gaps = 24/444 (5%)

Query: 78  NLKFLDLSHNSFNNSVLSSLA-GLSSLKNLSLAYNRL--EGSINI-EELDSLSNLEGLDM 133
           +++ LD+     +++  + L   L   + + L    L      +I   L     L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 134 SDNEIDNLVVPKDYRGLR----KLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 189
             NE+ ++ V    +GL+    K++ L L    +      + S           L  ++ 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 190 AKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLM 249
                  Q LCE     +  ++            +      VL    +     +S++ + 
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 250 HLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSI 309
                 L     +      +L+                 +  +      +L         
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 310 SLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSG 369
                      +                   ++     +       +L    L +     
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 370 PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLP--------NLGFLTISFNAFNGSIP 421
                      + +L +               VL          +    +          
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 422 SSFGDMNSLIYLDLSNNQLTGEIPEHLAMG---CFNLEYLLLSNNSLQGQLFSK-----K 473
                 + L  L L++  ++      LA       +L  L LSNN L      +     +
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 474 INLTKLKRLNLDGNHFIGGIPESL 497
                L++L L   ++   + + L
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (141), Expect = 1e-09
 Identities = 48/446 (10%), Positives = 106/446 (23%), Gaps = 33/446 (7%)

Query: 380 NIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNG----SIPSSFGDMNSLIYLDL 435
           +I +LDI   +L      E+  +L     + +            I S+     +L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 436 SNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPE 495
            +N+L       +  G       +   +     L      +       L     +     
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 496 SLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILD 555
            L +           +         +   S   A   P   +    P           ++
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 556 LSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVP 615
            +   +  + L  +  +   L          N      +         +   +N  G+V 
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 616 LRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSM 675
           +       L         +  +                        +       + G  +
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 676 GEKETIDFTTKERSYTYKGQPLESIHGLDLSCNK--------------------LIGEIP 715
             +  ++   +  S   K     +      S                       +     
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 716 SRIGELIRIHTLNLSRNNLTGT----IPVTFSNLRQVESLDLSYNNLTGKIPPRLVE--- 768
                   +  L L+  +++ +    +  T      +  LDLS N L      +LVE   
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 769 --LNALAVFTVAHNNLSGKIPERIAQ 792
                L    +     S ++ +R+  
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (131), Expect = 2e-08
 Identities = 51/464 (10%), Positives = 105/464 (22%), Gaps = 29/464 (6%)

Query: 178 SLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDF----IGSLPWCLANLTSLRVLH 233
            +++L ++    +      + L  L   Q + +D           +   L    +L  L+
Sbjct: 3   DIQSLDIQCEELSDA-RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 234 VPDNQLT----ENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQI 289
           +  N+L       +          I+ L L N                 L          
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 290 FGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSW 349
               ++    L          L                    +         +       
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 350 LLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFL 409
                  L   +  +       +L +    +    D+           E+         L
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL--------AL 233

Query: 410 TISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQL 469
             +     G      G ++    L        G   +     C  L              
Sbjct: 234 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 293

Query: 470 FSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDA 529
                    L    L+    +  +     + ++    + S           +   +    
Sbjct: 294 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN--- 350

Query: 530 IIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI---AGRPLNGAFSKCSYLLTLDLCNNRL 586
             + D  +             L +L L+  ++   +   L         L  LDL NN L
Sbjct: 351 -RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

Query: 587 NGNIPNWMGR-----LSQLRYLILANNNFEGEVPLRLCQLQKLR 625
                  +          L  L+L +  +  E+  RL  L+K +
Sbjct: 410 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (127), Expect = 6e-08
 Identities = 49/457 (10%), Positives = 118/457 (25%), Gaps = 43/457 (9%)

Query: 127 NLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRD--GSKVLHSIGSFPSLKTLYL 184
           +++ LD+   E+ +    +    L++ + + L    + +     +  ++   P+L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 185 KSNNFAKTVTTTQGLCEL-----AHLQELYIDHNDF-----------IGSLPWCLANLTS 228
           +SN           + +        +Q+L + +              + +LP       S
Sbjct: 63  RSNEL--GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 229 LRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQ 288
             +L     QL       P   L  ++L   S +                 K      N 
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 289 IFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPS 348
           I                    +L            + L      +  +        +   
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 349 WLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGF 408
             +           +       +     ++       +   K         G  L + G 
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 409 LTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQ 468
             +               + S  +     +  +  + ++  +    +    L +  ++  
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 469 LFSKKINLTKLKRLNLDGNHF----IGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNI 524
                   + L+ L L            +  +L    SL+ L +S+N +  +     G +
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA-----GIL 415

Query: 525 SFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 561
             ++++  P                 LE L L     
Sbjct: 416 QLVESVRQPGCL--------------LEQLVLYDIYW 438

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (125), Expect = 1e-07
 Identities = 45/451 (9%), Positives = 104/451 (23%), Gaps = 18/451 (3%)

Query: 332 LEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLS--GPFRLPT--RSRKNIIALDIS 387
           ++ + I    +     + LL      + + L +  L+      + +  R    +  L++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 388 YNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEH 447
            N+L       + + L          +  N  +  +   + S     L   Q        
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 448 LAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLY 507
           L      L    L +   + +    +             +             S+     
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 508 ISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLN 567
                +   +      +  L                               +N  G    
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 568 GAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLL 627
                     +  L    +        G     R L    +  E  +       +     
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE----- 298

Query: 628 DLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKE 687
                  +   P C   +   +   +     ++ +     +  +         ++     
Sbjct: 299 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 358

Query: 688 RSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIR----IHTLNLSRNNLTGTIPVTFS 743
                 GQP   +  L L+   +     S +   +     +  L+LS N L     +   
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 744 -----NLRQVESLDLSYNNLTGKIPPRLVEL 769
                    +E L L     + ++  RL  L
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 8e-07
 Identities = 40/444 (9%), Positives = 97/444 (21%), Gaps = 27/444 (6%)

Query: 43  SLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSS 102
            L    QQ + + L    +      +    L     L  L+L  N   +  +  +     
Sbjct: 21  ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 80

Query: 103 LKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLR 162
             +  +    L+          + +     +   +  +L          +L    L   +
Sbjct: 81  TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 140

Query: 163 IRDGSKVLH---------SIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHN 213
            R     L             +         K    +       G+  L    +      
Sbjct: 141 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL 200

Query: 214 DFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPF 273
           + +      + +     +  +  ++ +    +     L  + +  L          L   
Sbjct: 201 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 260

Query: 274 FNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLE 333
           + +       G  +                              +    P        ++
Sbjct: 261 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 320

Query: 334 FVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIAL---DISYNK 390
               +                     I       +G   L     +    L    ++   
Sbjct: 321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 380

Query: 391 LQGHIPVEIGKVL---PNLGFLTISFNAFNGSIPSSFGD-----MNSLIYLDLSNNQLTG 442
           +       +   L    +L  L +S N    +      +        L  L L +   + 
Sbjct: 381 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440

Query: 443 EIPEHLAMGCFNLEYLLLSNNSLQ 466
           E+ +        L+ L     SL+
Sbjct: 441 EMEDR-------LQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 1e-06
 Identities = 16/196 (8%), Positives = 44/196 (22%), Gaps = 5/196 (2%)

Query: 699 SIHGLDLSCNKLIGEIPSRIGELIR-IHTLNLSRNNLTG----TIPVTFSNLRQVESLDL 753
            I  LD+ C +L     + +  L++    + L    LT      I         +  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 754 SYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLP 813
             N L       +++        +   +L                               
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 814 KICNENRSSTEASTHDNEEDDNLIDMDSFYITFTVSSVIVILGIIGVLWANPYWRHRWFY 873
            + +           D +     + ++   ++      +  +      +      +    
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 874 LVEILITSCYYFVVHN 889
              + +          
Sbjct: 183 EAGVRVLCQGLKDSPC 198

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 5e-04
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 5/76 (6%)

Query: 722 IRIHTLNLSRNNLTGT-IPVTFSNLRQVESLDLSYNNLTGK----IPPRLVELNALAVFT 776
           + I +L++    L+          L+Q + + L    LT      I   L    ALA   
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 777 VAHNNLSGKIPERIAQ 792
           +  N L       + Q
Sbjct: 62  LRSNELGDVGVHCVLQ 77

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.004
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 12/110 (10%)

Query: 1   WVDESYSDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNN 60
             D    + CQ      +      +A   +S +  S+L    +       L  LDLS N 
Sbjct: 352 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL---AATLLANHSLRELDLSNNC 408

Query: 61  IAGCVENEGLEKLSG-----LSNLKFLDLSHNSFNNSVLSSLAGLSSLKN 105
           +     + G+ +L          L+ L L    ++  +   L  L   K 
Sbjct: 409 L----GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKP 454

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (149), Expect = 5e-11
 Identities = 39/212 (18%), Positives = 63/212 (29%), Gaps = 9/212 (4%)

Query: 423 SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRL 482
               + S + ++     LT  +P  L     +   L LS N L     +  +  T+L +L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 483 NLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIP 542
           NLD         +       L  L +S N +           +     +  +      +P
Sbjct: 61  NLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS--LP 116

Query: 543 SEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRY 602
               +          K N       G  +    L  L L NN L       +  L  L  
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

Query: 603 LILANNNFEGEVPLRLCQLQKLRLLDLSHNNF 634
           L+L  N+    +P        L    L  N +
Sbjct: 177 LLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 9e-09
 Identities = 36/204 (17%), Positives = 70/204 (34%), Gaps = 10/204 (4%)

Query: 384 LDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 443
           ++     L   +P ++ K   +   L +S N       ++      L  L+L   +    
Sbjct: 15  VNCDKRNLT-ALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE---- 66

Query: 444 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSL 503
           + +    G   +   L  +++    L      L  L  L++  N        +L     L
Sbjct: 67  LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 504 QGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG 563
           Q LY+  N++    P  +     L+ + + +N+L          L+ L+ L L +N++  
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 564 RPLNGAFSKCSYLLTLDLCNNRLN 587
            P    F     L    L  N   
Sbjct: 187 IP--KGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 7e-08
 Identities = 36/213 (16%), Positives = 65/213 (30%), Gaps = 11/213 (5%)

Query: 570 FSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDL 629
            SK +  L ++     L   +P  + +      L L+ N         L    +L  L+L
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 630 SHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERS 689
                +           L        L  ++     +              + F      
Sbjct: 63  DRAELTKLQVDG-TLPVLGT------LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 690 YTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVE 749
                + L  +  L L  N+L    P  +    ++  L+L+ NNLT       + L  ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 750 SLDLSYNNLTGKIPPRLVELNALAVFTVAHNNL 782
           +L L  N+L   IP      + L    +  N  
Sbjct: 176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 33/200 (16%), Positives = 57/200 (28%), Gaps = 11/200 (5%)

Query: 77  SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDN 136
            +   L LS N      L++L   + L  L+L    L        L  L  L+       
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 137 EIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTT 196
            +  L        +  + F  L+ L +        ++     L+ LYLK N         
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPL-------GALRGLGELQELYLKGNELKTLPPGL 143

Query: 197 QGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIEL 256
                        + +N+        L  L +L  L + +N L              +  
Sbjct: 144 LTPTPKLEKL--SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG--FFGSHLLPF 199

Query: 257 LILSNNHFQIPMSLEPFFNY 276
             L  N +     +  F  +
Sbjct: 200 AFLHGNPWLCNCEILYFRRW 219

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 4e-04
 Identities = 32/216 (14%), Positives = 56/216 (25%), Gaps = 16/216 (7%)

Query: 225 NLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHG 284
            + S   ++     LT      P        +L LS N      SL     Y++L   + 
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLP----KDTTILHLSENLLYT-FSLATLMPYTRLTQLNL 62

Query: 285 RENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRG 344
              ++          +     L+   L              +          +    +RG
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 345 EFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLP 404
                 L    N    +                   +  L ++ N L       +   L 
Sbjct: 123 LGELQELYLKGNELKTLPPGL---------LTPTPKLEKLSLANNNLTELPAGLLNG-LE 172

Query: 405 NLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQL 440
           NL  L +  N+   +IP  F   + L +  L  N  
Sbjct: 173 NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.6 bits (128), Expect = 3e-09
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 11/130 (8%)

Query: 54  LDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRL 113
           L L+  ++        L  L  L  +  LDLSHN       +    L++L+ L +     
Sbjct: 3   LHLAHKDL------TVLCHLEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASD 52

Query: 114 EGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSI 173
               N++ + +L  L+ L + +N +      +      +L  L+L G  +     +   +
Sbjct: 53  NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

Query: 174 GS-FPSLKTL 182
               PS+ ++
Sbjct: 113 AEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.6 bits (115), Expect = 2e-07
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 8/112 (7%)

Query: 80  KFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEID 139
           + L L+H     +VL  L  L  + +L L++NRL          +L+ L  L++     +
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALP-----PALAALRCLEVLQASDN 53

Query: 140 NLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAK 191
            L        L +L+ L L   R++  +  +  + S P L  L L+ N+  +
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSA-AIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 5e-07
 Identities = 20/121 (16%), Positives = 34/121 (28%), Gaps = 6/121 (4%)

Query: 480 KRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEG 539
           + L+L        +   L     +  L +S N +    P               +     
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL--- 55

Query: 540 PIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQ 599
                   L  L+ L L  N +           C  L+ L+L  N L         RL++
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAE 114

Query: 600 L 600
           +
Sbjct: 115 M 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 8e-05
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 45  FTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLK 104
                 +  LDLS N +           L+ L  L+ L  S N+  N  +  +A L  L+
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNALEN--VDGVANLPRLQ 68

Query: 105 NLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEI 138
            L L  NRL+ S  I+ L S   L  L++  N +
Sbjct: 69  ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 541 IPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQL 600
           +     QL  +  LDLS N +       A +    L  L   +N L            +L
Sbjct: 12  VLCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALENVDGVANLP--RL 67

Query: 601 RYLILANNNFEG-EVPLRLCQLQKLRLLDLSHNNFSG 636
           + L+L NN  +       L    +L LL+L  N+   
Sbjct: 68  QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 358 RSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFL-TISFNAF 416
           R + LA+  L+    L       +  LD+S+N+L+   P      L  L  L  +  +  
Sbjct: 1   RVLHLAHKDLTVLCHLE--QLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDN 53

Query: 417 NGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG 467
                    ++  L  L L NN+L         + C  L  L L  NSL  
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 7e-04
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 8/110 (7%)

Query: 180 KTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQL 239
           + L+L   +     T    L +L  +  L + HN     L      L +LR L V     
Sbjct: 1   RVLHLAHKDL----TVLCHLEQLLLVTHLDLSHN----RLRALPPALAALRCLEVLQASD 52

Query: 240 TENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQI 289
               +   + +L  ++ L+L NN  Q   +++P  +  +L + + + N +
Sbjct: 53  NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 9/111 (8%)

Query: 154 RFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHN 213
           R L L+   +      L  +     +  L L  N           L  L  LQ       
Sbjct: 1   RVLHLAHKDLTV----LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 56

Query: 214 DFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHF 264
           +  G           L+ L + +N+L ++ +  PL+    + LL L  N  
Sbjct: 57  NVDGVANLP-----RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 16/132 (12%)

Query: 104 KNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRI 163
           + L LA+  L     +  L+ L  +  LD+S N +           L  LR L++     
Sbjct: 1   RVLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLR-----ALPPALAALRCLEVLQASD 52

Query: 164 RDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHN------DFIG 217
               + +  + + P L+ L L +N   +     Q L     L  L +  N          
Sbjct: 53  NA-LENVDGVANLPRLQELLLCNNRL-QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

Query: 218 SLPWCLANLTSL 229
            L   L +++S+
Sbjct: 111 RLAEMLPSVSSI 122

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.8 bits (130), Expect = 2e-08
 Identities = 58/345 (16%), Positives = 101/345 (29%), Gaps = 34/345 (9%)

Query: 428 NSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGN 487
                L+L+N  L+  +PE       +LE L+ S NSL             LK L +D N
Sbjct: 38  RQAHELELNNLGLS-SLPELPP----HLESLVASCNSLT----ELPELPQSLKSLLVDNN 88

Query: 488 HFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQ 547
           +             +L  L      +  S           ++  +    ++     +   
Sbjct: 89  N-----------LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD 137

Query: 548 LDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILAN 607
           L        + NN                +  D  + +   ++P  +  +     ++   
Sbjct: 138 LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEEL 197

Query: 608 NNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIV 667
              +    L         L  L     S +     D    +      +L  +        
Sbjct: 198 PELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRD----NYLTDLPELPQSLTFLDVSE 253

Query: 668 SYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTL 727
           +   G S                        S+  L++S NKLI E+P+    L     L
Sbjct: 254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERL 309

Query: 728 NLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG--KIPPRLVELN 770
             S N+L   +P    NL+    L + YN L     IP  + +L 
Sbjct: 310 IASFNHLA-EVPELPQNLK---QLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 53/306 (17%), Positives = 100/306 (32%), Gaps = 13/306 (4%)

Query: 201 ELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILS 260
              HL+ L    N  +  LP    +L SL V +     L++       + +++ +L  L 
Sbjct: 56  LPPHLESLVASCNS-LTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP 114

Query: 261 NNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQL--TSISLSDHGDSD 318
                  + +    N S  K+     +  F    ++     P+ Q      ++    +S 
Sbjct: 115 ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL 174

Query: 319 GGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSR 378
                  L  +  +    I +     +   +L     +   +    +       L  R  
Sbjct: 175 KKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN 234

Query: 379 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNN 438
                 ++  +     +   I   L  L       NA +  I S      SL  L++SNN
Sbjct: 235 YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN 294

Query: 439 QLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLS 498
           +L  E+P         LE L+ S N L             LK+L+++ N  +   P+   
Sbjct: 295 KLI-ELPALPP----RLERLIASFNHLA----EVPELPQNLKQLHVEYNP-LREFPDIPE 344

Query: 499 NCSSLQ 504
           +   L+
Sbjct: 345 SVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 54/325 (16%), Positives = 97/325 (29%), Gaps = 24/325 (7%)

Query: 472 KKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISF----- 526
           +     +   L L+    +  +PE   +   L+ L  S N ++  +P    ++       
Sbjct: 33  RDCLDRQAHELELNNLG-LSSLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDN 87

Query: 527 --LDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNN 584
             L A+      LE    S        E+ + S   I    ++    K    L   L   
Sbjct: 88  NNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKI--IDVDNNSLKKLPDLPPSLEFI 145

Query: 585 RLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDN 644
               N    +  L  L +L     +      L    L    ++  ++          L  
Sbjct: 146 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 205

Query: 645 -TSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGL 703
            T+++ +      +P      + ++          E     T           L  +   
Sbjct: 206 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 265

Query: 704 DLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIP 763
               N    EI S       +  LN+S N L   +P     L   E L  S+N+L  ++P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVP 320

Query: 764 PRLVELNALAVFTVAHNNLSGKIPE 788
                   L    V +N L  + P+
Sbjct: 321 E---LPQNLKQLHVEYNPLR-EFPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 6e-05
 Identities = 59/362 (16%), Positives = 104/362 (28%), Gaps = 46/362 (12%)

Query: 101 SSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSG 160
                L L    L  S+     +   +LE L  S N +  L         + L+ L +  
Sbjct: 38  RQAHELELNNLGLS-SLP----ELPPHLESLVASCNSLTEL-----PELPQSLKSLLVDN 87

Query: 161 LRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP 220
             +        ++   P L      SNN  + +   Q               +    SL 
Sbjct: 88  NNL-------KALSDLPPLLEYLGVSNNQLEKLPELQNSS-------FLKIIDVDNNSLK 133

Query: 221 WCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLK 280
                  SL  +   +NQL E      L  LT+I     S                    
Sbjct: 134 KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNI 193

Query: 281 IFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDV 340
           +    E Q    + + ++                 D         +   +  +   +   
Sbjct: 194 LEELPELQNLPFLTTIYADNNLLKT--------LPDLPPSLEALNVRDNYLTDLPELPQS 245

Query: 341 NMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIG 400
               +    +    + L   +   N+ S   R       ++  L++S NKL      E+ 
Sbjct: 246 LTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-----ELP 300

Query: 401 KVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLL 460
            + P L  L  SFN     +P       +L  L +  N L  E P+       ++E L +
Sbjct: 301 ALPPRLERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDIPE----SVEDLRM 351

Query: 461 SN 462
           ++
Sbjct: 352 NS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 52/335 (15%), Positives = 100/335 (29%), Gaps = 15/335 (4%)

Query: 225 NLTSLRVLHVPDNQLTE-NLSSSPLMHL----TSIELLILSNNHF-QIPMSLEPFFNYSK 278
            +   R+    D Q  E  L++  L  L      +E L+ S N   ++P   +   +   
Sbjct: 26  EMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLV 85

Query: 279 LKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIIS 338
                   + +   +E    S     +L  +  S                      +   
Sbjct: 86  DNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 145

Query: 339 DVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVE 398
                       L+N   L +I   NNSL     LP      +   +I     +      
Sbjct: 146 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 205

Query: 399 IGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL 458
           +  +  +   L    +        +  D       +L  +    ++ E++  G   L   
Sbjct: 206 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 265

Query: 459 LLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIP 518
           L   N+   ++ S       L+ LN+  N  +  +P        L+ L  S N ++  +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPALPPR---LERLIASFNHLA-EVP 320

Query: 519 TWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEI 553
               N+  L    +  N L    P     ++ L +
Sbjct: 321 ELPQNLKQLH---VEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 10/92 (10%)

Query: 535 NHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWM 594
           N     I S       LE L++S N +   P     +    L  L    N L   +P   
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELP-----ALPPRLERLIASFNHLA-EVPEL- 322

Query: 595 GRLSQLRYLILANNNFEGEVPLRLCQLQKLRL 626
                L+ L +  N    E P     ++ LR+
Sbjct: 323 --PQNLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 14/84 (16%)

Query: 45  FTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLK 104
                 LE L++S N +         E  +    L+ L  S N    + +  L    +LK
Sbjct: 280 CDLPPSLEELNVSNNKLI--------ELPALPPRLERLIASFNHL--AEVPEL--PQNLK 327

Query: 105 NLSLAYNRLEGSINIEELDSLSNL 128
            L + YN L    +I   +S+ +L
Sbjct: 328 QLHVEYNPLREFPDI--PESVEDL 349

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 6/159 (3%)

Query: 477 TKLKRLNLDGNHFIGGIPESL-SNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDN 535
                L L+ N       + L      L  L +  N ++G  P      S +  + + +N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 536 HLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMG 595
            ++      F  L  L+ L+L  N I+     G+F   + L +L+L +N  N N      
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFNCNCHLAWF 147

Query: 596 RLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNF 634
                R   L         P    +++ +++ DL H+ F
Sbjct: 148 AEWL-RKKSLNGGAARCGAP---SKVRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 36/174 (20%), Positives = 61/174 (35%), Gaps = 7/174 (4%)

Query: 419 SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTK 478
            IP           L L++N+L     + L     +L  L L  N L G   +     + 
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 479 LKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLE 538
           ++ L L  N       +       L+ L + DN IS  +P    +++ L ++ +  N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 539 GPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPN 592
                  C L +       K+   G    GA SK   +   DL ++    +  N
Sbjct: 140 C-----NCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSEN 188

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 7e-05
 Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 5/156 (3%)

Query: 493 IPESLSNCSSLQGLYISDNDISGSIPTWM-GNISFLDAIIMPDNHLEGPIPSEFCQLDYL 551
           IP  +        L ++DN++       + G +  L  + +  N L G  P+ F    ++
Sbjct: 23  IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80

Query: 552 EILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE 611
           + L L +N I     N  F     L TL+L +N+++  +P     L+ L  L LA+N F 
Sbjct: 81  QELQLGENKIKEIS-NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 612 GEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSL 647
               L     + LR   L+        P  + +  +
Sbjct: 140 CNCHLA-WFAEWLRKKSLNGGAARCGAPSKVRDVQI 174

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 24/158 (15%), Positives = 53/158 (33%), Gaps = 5/158 (3%)

Query: 355 TNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFN 414
            +   ++L +N L          R   +            I     +   ++  L +  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 415 AFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKI 474
                    F  ++ L  L+L +NQ++  +P        +L  L L++N           
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE-HLNSLTSLNLASNPFNC-NCHLAW 146

Query: 475 NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDND 512
               L++ +L+G     G P  + +   +Q   +  ++
Sbjct: 147 FAEWLRKKSLNGGAARCGAPSKVRD---VQIKDLPHSE 181

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 3e-07
 Identities = 45/216 (20%), Positives = 73/216 (33%), Gaps = 20/216 (9%)

Query: 75  GLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMS 134
            L+N   +    ++  ++V  + A L  +  LS     +     IE +  L+NL GL++ 
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 135 DNEI---------DNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLK 185
           DN+I           +   +      K          I+        I     L  L   
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 186 SNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSS 245
              +      T            Y+   +   S    LANL+ L  L   DN+++     
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS---DI 188

Query: 246 SPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKI 281
           SPL  L ++  + L NN       + P  N S L I
Sbjct: 189 SPLASLPNLIEVHLKNNQIS---DVSPLANTSNLFI 221

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 9e-07
 Identities = 33/228 (14%), Positives = 61/228 (26%), Gaps = 24/228 (10%)

Query: 419 SIPSSFGDMN--SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINL 476
           +I   F D    + I +    + +T  + +        +  L      +          L
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVTT--IEGVQYL 62

Query: 477 TKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNH 536
             L  L L  N      P       +   L  +      +I       +         + 
Sbjct: 63  NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 537 LEGPIPSEFCQLDYLEILDLSKNNIAGRPL-------------NGAFSKCSYLLTLDLCN 583
                 S    L        + + +AG                    +  S L TL   +
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 584 NRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSH 631
           N+++   P  +  L  L  + L NN      PL       L ++ L++
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 34/222 (15%), Positives = 74/222 (33%), Gaps = 21/222 (9%)

Query: 48  FQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLS 107
                 +    +N+   V        + L  +  L           +  +  L++L  L 
Sbjct: 18  LANAIKIAAGKSNVTDTV------TQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 108 LAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGS 167
           L  N++     ++ L  ++ LE        +  +   +  + L            +   S
Sbjct: 70  LKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 168 KVLHSIGSFPSLKTLYL--------KSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSL 219
            +         +  +            +     V+    L  L+ L  L  D N      
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189

Query: 220 PWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSN 261
           P  LA+L +L  +H+ +NQ++     SPL + +++ ++ L+N
Sbjct: 190 P--LASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 32/239 (13%), Positives = 62/239 (25%), Gaps = 28/239 (11%)

Query: 224 ANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFH 283
             L +   +    + +T+ ++ +    L  I  L           ++E     + L    
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 284 GRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMR 343
            ++NQI     +   +LT   +L          S    +            +        
Sbjct: 70  LKDNQIT--DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 344 GEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVL 403
                 L  +   +                       +  L            +     L
Sbjct: 128 LSNLQVLYLDLNQIT---------------NISPLAGLTNLQYLSIGNAQVSDLTPLANL 172

Query: 404 PNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSN 462
             L  L    N  +   P     + +LI + L NNQ++   P        NL  + L+N
Sbjct: 173 SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 32/218 (14%), Positives = 64/218 (29%), Gaps = 19/218 (8%)

Query: 547 QLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILA 606
            L     +   K+N+         +    + TL      +   I   +  L+ L  L L 
Sbjct: 17  ALANAIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELK 71

Query: 607 NNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDN----------TSLHREEGYYDL 656
           +N      PL+         L  +       I                T +    G  +L
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 657 IPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPS 716
              Y +   I + +    +   + +     + S       L  +  L    NK+    P 
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190

Query: 717 RIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLS 754
            +  L  +  ++L  N ++   P   +N   +  + L+
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 23/209 (11%), Positives = 52/209 (24%), Gaps = 20/209 (9%)

Query: 576 LLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635
            + +    + +   +      L  +  L            ++   L  L  L+L  N  +
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQIT 76

Query: 636 GQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQ 695
              P          E     L              +  +  +   +       +      
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 696 PLESIHGLDL----------SCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNL 745
            L  I  +            S         + +  L ++ TL    N ++   P   ++L
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASL 194

Query: 746 RQVESLDLSYNNLTGKIP----PRLVELN 770
             +  + L  N ++   P      L  + 
Sbjct: 195 PNLIEVHLKNNQISDVSPLANTSNLFIVT 223

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 37/232 (15%), Positives = 65/232 (28%), Gaps = 21/232 (9%)

Query: 352 ENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTI 411
               N   I    ++++    +       I  L      +     +E  + L NL  L +
Sbjct: 16  PALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTT---IEGVQYLNNLIGLEL 70

Query: 412 SFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFS 471
             N      P       + + L  +  +    I    ++   +L               +
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS----TQITDVTPLA 126

Query: 472 KKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAII 531
              NL  L          +  I             Y+S  +   S  T + N+S L  + 
Sbjct: 127 GLSNLQVL-------YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLK 179

Query: 532 MPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCN 583
             DN +    P     L  L  + L  N I+        +  S L  + L N
Sbjct: 180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 39  YLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLA 98
             + +      +L +L    N I        +  L+ L NL  + L +N  ++  +S LA
Sbjct: 163 VSDLTPLANLSKLTTLKADDNKI------SDISPLASLPNLIEVHLKNNQISD--VSPLA 214

Query: 99  GLSSLKNLSL 108
             S+L  ++L
Sbjct: 215 NTSNLFIVTL 224

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 6e-07
 Identities = 22/133 (16%), Positives = 43/133 (32%), Gaps = 6/133 (4%)

Query: 474 INLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMP 533
            N  + + L+L G   I  I    +       +  SDN+I          +  L  +++ 
Sbjct: 15  TNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVN 71

Query: 534 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCN---NRLNGNI 590
           +N +          L  L  L L+ N++         +    L  L +            
Sbjct: 72  NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYR 131

Query: 591 PNWMGRLSQLRYL 603
              + ++ Q+R L
Sbjct: 132 LYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 6e-05
 Identities = 20/141 (14%), Positives = 51/141 (36%), Gaps = 8/141 (5%)

Query: 422 SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKR 481
           + + +      LDL   ++   + E+L       + +  S+N ++         L +LK 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKT 67

Query: 482 LNLDGNHFIGGIPESLSNCSSLQGLYISDNDISG----SIPTWMGNISFLDAIIMPDNHL 537
           L ++ N               L  L +++N +           + ++++L  +  P  + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 538 EGPIPSEFCQLDYLEILDLSK 558
           +        ++  + +LD  K
Sbjct: 128 KHYRLYVIYKVPQVRVLDFQK 148

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 5e-04
 Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 45  FTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLK 104
           +T   +   LDL G  I   +EN G    + L     +D S N      L     L  LK
Sbjct: 14  YTNAVRDRELDLRGYKIP-VIENLG----ATLDQFDAIDFSDNEIRK--LDGFPLLRRLK 66

Query: 105 NLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIR 164
            L +  NR+       +  +L +L  L +++N +  L        L+ L +L +    + 
Sbjct: 67  TLLVNNNRICRIGEGLD-QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125

Query: 165 DGSK-VLHSIGSFPSLKTL 182
           +     L+ I   P ++ L
Sbjct: 126 NKKHYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 710 LIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNL 758
           LI +        +R   L+L    +   I    + L Q +++D S N +
Sbjct: 7   LIEQAAQYT-NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI 53

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 5e-06
 Identities = 28/224 (12%), Positives = 58/224 (25%), Gaps = 6/224 (2%)

Query: 541 IPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQL 600
           IPS+  +      L      +      GAFS    L  +++  N +   I   +      
Sbjct: 23  IPSDLPR--NAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 601 RYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTY 660
            + I                     L  L  +N   +  P +      ++          
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 661 RNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGE 720
            +  +  S+           ++    +  +       +         N L          
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 721 LIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPP 764
                 L++SR  +         NL+++ +      NL  K+P 
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 5e-05
 Identities = 31/227 (13%), Positives = 70/227 (30%), Gaps = 6/227 (2%)

Query: 384 LDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 443
                +K+   IP ++     N   L             +F     L  +++S N +   
Sbjct: 13  FLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 444 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSL 503
           I   +      L  + +   +    +  +        +  L  N  I  +P+     S  
Sbjct: 69  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128

Query: 504 QGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNN--I 561
           + L    ++I+         +      ++   +  G      C  +  ++ +L+ ++   
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN 188

Query: 562 AGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANN 608
                N  F   S  + LD+   R++      +  L +LR     N 
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 23/212 (10%), Positives = 46/212 (21%), Gaps = 3/212 (1%)

Query: 576 LLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635
            + L     +L             L  + ++ N+    +   +                +
Sbjct: 31  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 90

Query: 636 GQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQ 695
                     +L   +         ++  D+   +    +      +             
Sbjct: 91  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 150

Query: 696 PLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSY 755
                  L L+ N +                     NNL       F        LD+S 
Sbjct: 151 LSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 210

Query: 756 NNLTGKIPPRLVELNALAVFTVAHNNLSGKIP 787
             +       L  L  L   +    NL  K+P
Sbjct: 211 TRIHSLPSYGLENLKKLRARST--YNLK-KLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 28/213 (13%), Positives = 53/213 (24%), Gaps = 5/213 (2%)

Query: 227 TSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRE 286
            +   L     +L   +          +E + +S N     +  + F N  KL      +
Sbjct: 29  RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 287 NQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEF 346
                 I        P  Q   IS +               H      + I D       
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLISNTGIK----HLPDVHKIHSLQKVLLDIQDNINIHTI 143

Query: 347 PSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNL 406
                   +    I+  N +          +   +  L++S N     +P ++       
Sbjct: 144 ERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 203

Query: 407 GFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQ 439
             L IS    +        ++  L      N +
Sbjct: 204 VILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 3/116 (2%)

Query: 698 ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIP-VTFSNLRQVESLDLSYN 756
               GL  + +  + +    +     +  L +        +       L ++ +L +  +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 757 NLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPL 812
            L    P        L+   ++ N L   +  +  Q  +  E    GNP  C   L
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 2/105 (1%)

Query: 433 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGG 492
           L  + +    +   HL       E  + +   LQ         L +L+ L +  +     
Sbjct: 13  LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 493 IPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHL 537
            P++      L  L +S N +  S+         L  +++  N L
Sbjct: 72  APDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 26/340 (7%), Positives = 73/340 (21%), Gaps = 42/340 (12%)

Query: 454 NLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHF----IGGIPESLSNCSSLQGLYIS 509
           +L+   ++    +  +F+  +    +K + L GN         + E++++   L+    S
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 510 DNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGA 569
           D             +  L   ++    L     S+       +   +   +      +  
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 570 FSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLIL-ANNNFEGEVPLRLCQLQKLRLLD 628
                          R    +       +      +    N      ++           
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 629 LSHNNFSGQIPPC----------------LDNTSLHREEGYYDLIPTYRNEYDIVSYNVG 672
           L                            L    L      +                  
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 673 PSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRN 732
             + +              +       +  L L  N++  +    +  +I          
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI---------- 297

Query: 733 NLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNAL 772
                       +  +  L+L+ N    +    + E+  +
Sbjct: 298 ---------DEKMPDLLFLELNGNRF-SEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 6e-04
 Identities = 45/356 (12%), Positives = 83/356 (23%), Gaps = 37/356 (10%)

Query: 156 LDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTT--QGLCELAHLQELYIDHN 213
           L L  +   D   V   +    S+K + L  N           + +     L+       
Sbjct: 10  LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69

Query: 214 DFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPF 273
                       L  L    +   +L     S      T+ E LI   +       L   
Sbjct: 70  FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 129

Query: 274 FNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLE 333
            N    +        +     +  +   P  +      +   +       K       L 
Sbjct: 130 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 189

Query: 334 FVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQG 393
            V +    +R E    L                L+    L     ++     +  + L  
Sbjct: 190 TVKMVQNGIRPEGIEHL------------LLEGLAYCQELKVLDLQDNTFTHLGSSALAI 237

Query: 394 HIPVEIGKVLPNLGFLTISFNAFNGSI-PSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGC 452
            +          L    +S       +   S  +   L  L L  N++  +    L    
Sbjct: 238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 297

Query: 453 FNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHF--IGGIPESLSNCSSLQGL 506
                                  +  L  L L+GN F     + + +    S +G 
Sbjct: 298 DE--------------------KMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGR 333

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 4/102 (3%)

Query: 540 PIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNG--NIPNWMGRL 597
               +    +   +L+   +  A   L         LL+L+L NNRL    ++ + + + 
Sbjct: 33  RSDPDLVAQNIDVVLNRRSSMAAT--LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKA 90

Query: 598 SQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIP 639
             L+ L L+ N  + E  L   +  KL  L L  N+ S    
Sbjct: 91  PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR 132

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 37/213 (17%)

Query: 395 IPVEIGKVLPNLGF-----LTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIP-EHL 448
           +P  I ++  +  F       +   +   ++  +  ++NS+  +  +N+ +      ++L
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQYL 67

Query: 449 AMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNL------------------DGNHFI 490
                N+  L L+ N L        +       L+                      H  
Sbjct: 68  P----NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG 123

Query: 491 GGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDY 550
                 L +   L+ LY+ +N I+                 + DN +   +P     L  
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTL--SLEDNQISDIVP--LAGLTK 179

Query: 551 LEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCN 583
           L+ L LSKN+I+      A +    L  L+L +
Sbjct: 180 LQNLYLSKNHISDLR---ALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 38/214 (17%), Positives = 77/214 (35%), Gaps = 20/214 (9%)

Query: 419 SIPSSFGDMN--SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINL 476
            I   F D      I  +L    +T  + ++      +++ ++ +N+ ++     +   L
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELN---SIDQIIANNSDIKSVQGIQ--YL 67

Query: 477 TKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNH 536
             + +L L+GN      P +                            S  D   +    
Sbjct: 68  PNVTKLFLNGNKLTDIKPLANLKNLGWL---------FLDENKVKDLSSLKDLKKLKSLS 118

Query: 537 LEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGR 596
           LE    S+   L +L  L+               S+ + L TL L +N+++  +P  +  
Sbjct: 119 LEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAG 176

Query: 597 LSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLS 630
           L++L+ L L+ N+      L    L+ L +L+L 
Sbjct: 177 LTKLQNLYLSKNHISDLRAL--AGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 20/189 (10%), Positives = 54/189 (28%), Gaps = 16/189 (8%)

Query: 576 LLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635
            +  +L    +   +      L+ +  +I  N++ +    ++   L  +  L L+ N  +
Sbjct: 26  TIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNKLT 81

Query: 636 GQ----------IPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTT 685
                            +N                 +       ++   +   +      
Sbjct: 82  DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL 141

Query: 686 KERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNL 745
                T             LS           +  L ++  L LS+N+++  +    + L
Sbjct: 142 GNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLRA-LAGL 199

Query: 746 RQVESLDLS 754
           + ++ L+L 
Sbjct: 200 KNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 31/197 (15%), Positives = 66/197 (33%), Gaps = 17/197 (8%)

Query: 74  SGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDM 133
              +     +L   S  ++V  +   L+S+  +    + ++    I+    L N+  L +
Sbjct: 21  DAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQGIQ---YLPNVTKLFL 75

Query: 134 SDNEID---------NLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYL 184
           + N++          NL          K         +++  S   + I     L  L  
Sbjct: 76  NGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135

Query: 185 KSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLS 244
             + +      T         +   +   D   S    LA LT L+ L++  N ++    
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS---D 192

Query: 245 SSPLMHLTSIELLILSN 261
              L  L ++++L L +
Sbjct: 193 LRALAGLKNLDVLELFS 209

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 30/194 (15%), Positives = 66/194 (34%), Gaps = 19/194 (9%)

Query: 74  SGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDM 133
           + L+      L   +  ++V  S   L  +  L      ++   +I+ ++ L+NL  ++ 
Sbjct: 15  TALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINF 69

Query: 134 SDNEIDNLVV----------PKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLY 183
           S+N++ ++              +   +  +  L                    P      
Sbjct: 70  SNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 129

Query: 184 LKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENL 243
           L     +    +           +     ++ +  L   LANLT+L  L +  N+++   
Sbjct: 130 LNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVS--- 185

Query: 244 SSSPLMHLTSIELL 257
             S L  LT++E L
Sbjct: 186 DISVLAKLTNLESL 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	892
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.41
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.39
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.27
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.07
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.22
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.13
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.8
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.49
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.19
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.75

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=7.9e-33  Score=293.58  Aligned_cols=258  Identities=30%  Similarity=0.548  Sum_probs=215.6

Q ss_pred             CCcEEEccCCcCCC--CccccccCCCCCcEEECCC-CcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccE
Q 044158          502 SLQGLYISDNDISG--SIPTWMGNISFLDAIIMPD-NHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLT  578 (892)
Q Consensus       502 ~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~  578 (892)
                      +++.|+|++|.+++  .+|..+++++.|++|+|++ |.++|.+|.+|+++++|++|+|++|++.+ ..+..+..+.+|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~-~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccc-cccccccchhhhcc
Confidence            45566666666655  2556666666666666664 66777777777888888888888888777 44666778888888


Q ss_pred             EEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCC-CEEEcCCCcCCCCCCccccCCcccccccccccc
Q 044158          579 LDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKL-RLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLI  657 (892)
Q Consensus       579 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~  657 (892)
                      +++++|.+.+.+|..+++++.|+.+++++|.+.+.+|..+..+..+ +.+++++|+++|..|..+.+..           
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-----------  198 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-----------  198 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-----------
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-----------
Confidence            8888888888888888899999999999999988888888888776 8899999999887776655432           


Q ss_pred             cccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCcc
Q 044158          658 PTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGT  737 (892)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  737 (892)
                                                                ...++++++...|.+|..++.+++++.+++++|.+++.
T Consensus       199 ------------------------------------------~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~  236 (313)
T d1ogqa_         199 ------------------------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             ------------------------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             ------------------------------------------cccccccccccccccccccccccccccccccccccccc
Confidence                                                      34589999999999999999999999999999999987


Q ss_pred             ccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCccccccCCCCcccccCCCCCCCCCCCCCC
Q 044158          738 IPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKIC  816 (892)
Q Consensus       738 ~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~l~~~c  816 (892)
                      +| .++.+++|+.|||++|+++|.+|..+.++++|++|||++|+|+|.||. ++.+.+++..++.||+.+||.|++ .|
T Consensus       237 ~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         237 LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCC-CC
Confidence            66 688999999999999999999999999999999999999999999998 688899999999999999999875 45

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=1e-30  Score=277.19  Aligned_cols=252  Identities=29%  Similarity=0.507  Sum_probs=188.7

Q ss_pred             CCcEEeecCccCcC--CCCcccccCCCCcEEEccC-CcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEE
Q 044158          478 KLKRLNLDGNHFIG--GIPESLSNCSSLQGLYISD-NDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEIL  554 (892)
Q Consensus       478 ~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  554 (892)
                      +++.|+|++|.+.+  .+|..++++++|++|+|++ |+++|.+|..++++++|++|+|++|++.+..+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            35555566555555  2456666666666666664 56666666666666666666666666666666667777777777


Q ss_pred             eCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCC-CEEecccccccccCCccccCCCCCCEEEcCCCc
Q 044158          555 DLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQL-RYLILANNNFEGEVPLRLCQLQKLRLLDLSHNN  633 (892)
Q Consensus       555 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~  633 (892)
                      ++++|.+.+ .+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+..+ .++++++.
T Consensus       131 ~l~~N~~~~-~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~  208 (313)
T d1ogqa_         131 DFSYNALSG-TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM  208 (313)
T ss_dssp             ECCSSEEES-CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred             ccccccccc-cCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            777777766 566777777888888888888877788777777665 778888888888877777766544 68888888


Q ss_pred             CCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCcccccc
Q 044158          634 FSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGE  713 (892)
Q Consensus       634 l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  713 (892)
                      +.|.+|..+...                                                    +.++.+++++|.+++.
T Consensus       209 ~~~~~~~~~~~~----------------------------------------------------~~l~~l~~~~~~l~~~  236 (313)
T d1ogqa_         209 LEGDASVLFGSD----------------------------------------------------KNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             EEECCGGGCCTT----------------------------------------------------SCCSEEECCSSEECCB
T ss_pred             cccccccccccc----------------------------------------------------cccccccccccccccc
Confidence            887776654432                                                    2577788888888876


Q ss_pred             CCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCc-cccc
Q 044158          714 IPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNN-LSGK  785 (892)
Q Consensus       714 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~-l~g~  785 (892)
                      +| .++.+++|+.|+|++|+++|.+|..|+++++|++|||++|+|+|.+|. +.++++|+.+++++|+ ++|.
T Consensus       237 ~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         237 LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             GG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             cc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence            55 688888999999999999999999999999999999999999999985 5788899999999997 6664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=1.3e-26  Score=253.57  Aligned_cols=355  Identities=21%  Similarity=0.294  Sum_probs=250.8

Q ss_pred             ccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcC
Q 044158          337 ISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAF  416 (892)
Q Consensus       337 l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~  416 (892)
                      +....+.+.++.   +.+.+|++|+++++.++..  ..+..+++|++|++++|+++ .++. + ..+++|++|++++|.+
T Consensus        29 l~~~~~~~~~~~---~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~-l-~~L~~L~~L~L~~n~i  100 (384)
T d2omza2          29 LGKTNVTDTVSQ---TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP-L-KNLTKLVDILMNNNQI  100 (384)
T ss_dssp             TTCSSTTSEECH---HHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCC
T ss_pred             hCCCCCCCccCH---HHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc-c-cCCccccccccccccc
Confidence            334445555543   3566788888888888753  34667788888888888887 4543 3 3478888888888888


Q ss_pred             CccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcc
Q 044158          417 NGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPES  496 (892)
Q Consensus       417 ~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~  496 (892)
                      .+..  .++.+++|+.|+++++.++ .++..  .....+.......|.+......................     ....
T Consensus       101 ~~i~--~l~~l~~L~~L~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~  170 (384)
T d2omza2         101 ADIT--PLANLTNLTGLTLFNNQIT-DIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKP  170 (384)
T ss_dssp             CCCG--GGTTCTTCCEEECCSSCCC-CCGGG--TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGG
T ss_pred             cccc--ccccccccccccccccccc-ccccc--cccccccccccccccccccccccccccccccccccccc-----hhhh
Confidence            7543  3778888888888888877 33332  23556777777777665443333222222222222211     1233


Q ss_pred             cccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCc
Q 044158          497 LSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYL  576 (892)
Q Consensus       497 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L  576 (892)
                      +...+.........|...  ....+..++.++.+++++|.+++..|  +...++|++|++++|+++.+   +.+..+++|
T Consensus       171 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~---~~l~~l~~L  243 (384)
T d2omza2         171 LANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI---GTLASLTNL  243 (384)
T ss_dssp             GTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC---GGGGGCTTC
T ss_pred             hccccccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc---chhhccccc
Confidence            445555666666665543  34556777888888888888886554  45567889999999988763   367788899


Q ss_pred             cEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccccccccccc
Q 044158          577 LTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDL  656 (892)
Q Consensus       577 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~  656 (892)
                      +.|++++|++++..+  ++.+++|++|++++|++++..  .+..++.++.+++++|++++. + .+              
T Consensus       244 ~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~-~-~~--------------  303 (384)
T d2omza2         244 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI-S-PI--------------  303 (384)
T ss_dssp             SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC-G-GG--------------
T ss_pred             chhccccCccCCCCc--ccccccCCEeeccCcccCCCC--ccccccccccccccccccccc-c-cc--------------
Confidence            999999998886443  777889999999999887543  367788889999998888641 1 11              


Q ss_pred             ccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCc
Q 044158          657 IPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTG  736 (892)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  736 (892)
                                                            ..++.++.|++++|++++..  .+..+++|++|++++|++++
T Consensus       304 --------------------------------------~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~  343 (384)
T d2omza2         304 --------------------------------------SNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD  343 (384)
T ss_dssp             --------------------------------------GGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC
T ss_pred             --------------------------------------chhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC
Confidence                                                  12346788999999998753  38889999999999999985


Q ss_pred             cccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCC
Q 044158          737 TIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHN  780 (892)
Q Consensus       737 ~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N  780 (892)
                       +| .++++++|++||+++|++++.+|  +.++++|+.|++++|
T Consensus       344 -l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         344 -VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             -Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence             44 68899999999999999997655  789999999999988

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=3.7e-25  Score=241.88  Aligned_cols=165  Identities=25%  Similarity=0.341  Sum_probs=93.3

Q ss_pred             CCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEE
Q 044158          379 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL  458 (892)
Q Consensus       379 ~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L  458 (892)
                      ++|++|++++|.++ .++ .+ ..+++|+.|++++|.+++..+  +..+++|++|++++++++ .++.  +..++.++.+
T Consensus       219 ~~L~~L~l~~n~l~-~~~-~l-~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~-~~~~--~~~~~~l~~l  290 (384)
T d2omza2         219 TNLDELSLNGNQLK-DIG-TL-ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP--LAGLTALTNL  290 (384)
T ss_dssp             TTCCEEECCSSCCC-CCG-GG-GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEE
T ss_pred             CCCCEEECCCCCCC-Ccc-hh-hcccccchhccccCccCCCCc--ccccccCCEeeccCcccC-CCCc--cccccccccc
Confidence            34444444444444 222 12 225556666666665554322  555556666666666655 3332  2345566666


Q ss_pred             EccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCccc
Q 044158          459 LLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLE  538 (892)
Q Consensus       459 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  538 (892)
                      .++.|.+++.  ..+..+++++.|++++|++++..  .+..+++|++|++++|++++. + .+..+++|++|++++|+++
T Consensus       291 ~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         291 ELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDV-S-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             ECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCC
T ss_pred             cccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCC-h-hHcCCCCCCEEECCCCcCC
Confidence            6666665542  23555666666666666666432  256666677777777766642 2 4666677777777777766


Q ss_pred             CCCcccccCCCCCcEEeCCCC
Q 044158          539 GPIPSEFCQLDYLEILDLSKN  559 (892)
Q Consensus       539 ~~~~~~~~~l~~L~~L~Ls~n  559 (892)
                      +..|  +.++++|+.|+|++|
T Consensus       365 ~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         365 DLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             BCGG--GTTCTTCSEEECCCE
T ss_pred             CChh--hccCCCCCEeeCCCC
Confidence            5443  667777777777766

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.4e-23  Score=220.84  Aligned_cols=105  Identities=24%  Similarity=0.299  Sum_probs=49.7

Q ss_pred             cEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCC-cccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecc
Q 044158          528 DAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR-PLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILA  606 (892)
Q Consensus       528 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  606 (892)
                      +.|.+.+|.+.+..+..+.....+..++...|..... ..+..+..+++|+.+++++|.+.. +|..+  +++|+.|+++
T Consensus       103 ~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~~L~~L~l~  179 (305)
T d1xkua_         103 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLD  179 (305)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECT
T ss_pred             hhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCccc--CCccCEEECC
Confidence            3333333333333333333344444444444432211 112344555555555555555542 33221  3556666666


Q ss_pred             cccccccCCccccCCCCCCEEEcCCCcCC
Q 044158          607 NNNFEGEVPLRLCQLQKLRLLDLSHNNFS  635 (892)
Q Consensus       607 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  635 (892)
                      +|...+..+..+..++.+++|++++|+++
T Consensus       180 ~n~~~~~~~~~~~~~~~l~~L~~s~n~l~  208 (305)
T d1xkua_         180 GNKITKVDAASLKGLNNLAKLGLSFNSIS  208 (305)
T ss_dssp             TSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred             CCcCCCCChhHhhcccccccccccccccc
Confidence            66666555555666666666555555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=2.5e-23  Score=218.90  Aligned_cols=85  Identities=26%  Similarity=0.274  Sum_probs=44.0

Q ss_pred             CCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEE
Q 044158          549 DYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLD  628 (892)
Q Consensus       549 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  628 (892)
                      ++|++|++++|..++ ..+..|.+++.+++|++++|.+.+..+.++.++++|++|+|++|+++ .+|..+..+++|++|+
T Consensus       171 ~~L~~L~l~~n~~~~-~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~  248 (305)
T d1xkua_         171 PSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY  248 (305)
T ss_dssp             TTCSEEECTTSCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred             CccCEEECCCCcCCC-CChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEE
Confidence            345555555554444 23344555555555555555555444555555555555555555555 3444555555555555


Q ss_pred             cCCCcCC
Q 044158          629 LSHNNFS  635 (892)
Q Consensus       629 Ls~N~l~  635 (892)
                      |++|+|+
T Consensus       249 Ls~N~i~  255 (305)
T d1xkua_         249 LHNNNIS  255 (305)
T ss_dssp             CCSSCCC
T ss_pred             CCCCccC
Confidence            5555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.6e-24  Score=221.82  Aligned_cols=223  Identities=26%  Similarity=0.245  Sum_probs=122.4

Q ss_pred             EEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEcc-
Q 044158          383 ALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS-  461 (892)
Q Consensus       383 ~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~-  461 (892)
                      .++.+++.++ .+|..+   .+++++|+|++|+++...+.+|.++++|++|++++|++. .++...+.++..++.+... 
T Consensus        15 ~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             EEEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-cccccccccccccccccccc
Confidence            3455555555 666554   346777777777777666666777777777777777776 5555555555666666543 


Q ss_pred             CCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCC
Q 044158          462 NNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPI  541 (892)
Q Consensus       462 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~  541 (892)
                      .+.++...+..|.++++|++|++++|.+....+..+..+++|+.+++++|++++..+..+..+++|+.|++++|++++..
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence            34444444555555566666666665555444445555555555555555555444444555555555555555554444


Q ss_pred             cccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccccccc
Q 044158          542 PSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE  611 (892)
Q Consensus       542 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  611 (892)
                      +.+|.++++|+++++++|++++ ..|..|.++++|++|++++|++.+..+.+|+.+++|++|++++|++.
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hhhhccccccchhhhhhccccc-cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            4444444455555555544444 22444444444444444444444444444444444444444444444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.1e-24  Score=220.87  Aligned_cols=226  Identities=22%  Similarity=0.243  Sum_probs=196.2

Q ss_pred             cEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeec-
Q 044158          407 GFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLD-  485 (892)
Q Consensus       407 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-  485 (892)
                      ..++.++++++ .+|..+.  +++++|+|++|+++ .+|...+.++++|++|++++|++....+..+..++.++.+... 
T Consensus        14 ~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCC-CCCHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            34577777777 5676554  57899999999998 8888878889999999999999999888888889999998765 


Q ss_pred             CccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCc
Q 044158          486 GNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRP  565 (892)
Q Consensus       486 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  565 (892)
                      .+.+....+..|.++++|++|++++|.+....+..+....+|+.+++++|.+++..+..|..+++|+.|++++|+++++ 
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l-  168 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-  168 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc-
Confidence            5556666678899999999999999999887788888899999999999999987778888999999999999999873 


Q ss_pred             ccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCC
Q 044158          566 LNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQ  637 (892)
Q Consensus       566 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~  637 (892)
                      .+.+|.++++|+++++++|++++..|.+|..+++|++|++++|++.+..+..+..+++|++|++++|++.+.
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             chhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            467889999999999999999988899999999999999999999988888899999999999999998753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.6e-22  Score=207.42  Aligned_cols=202  Identities=23%  Similarity=0.248  Sum_probs=133.0

Q ss_pred             CCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCE
Q 044158          523 NISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRY  602 (892)
Q Consensus       523 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  602 (892)
                      ....+.+++.++++++ .+|..+.  +++++|+|++|++++++ +..|.++++|++|+|++|+++. +| .++.+++|++
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~   81 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGT   81 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCE
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcC-HHHhhccccccccccccccccc-cc-cccccccccc
Confidence            3445666777777777 3565543  46777777777777532 4567777777777777777763 33 2456777777


Q ss_pred             EecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeE
Q 044158          603 LILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETID  682 (892)
Q Consensus       603 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  682 (892)
                      |++++|++++ .+..+..+++|+.|++++|++.+..+..+.                                       
T Consensus        82 L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---------------------------------------  121 (266)
T d1p9ag_          82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR---------------------------------------  121 (266)
T ss_dssp             EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTT---------------------------------------
T ss_pred             cccccccccc-cccccccccccccccccccccceeeccccc---------------------------------------
Confidence            7777777763 455667777777777777776532222111                                       


Q ss_pred             eeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccC
Q 044158          683 FTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKI  762 (892)
Q Consensus       683 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~i  762 (892)
                                   .+..++.|++++|.+++..+..+..++.++.|++++|++++..+..|+.+++|++|||++|+|+ .+
T Consensus       122 -------------~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l  187 (266)
T d1p9ag_         122 -------------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (266)
T ss_dssp             -------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             -------------cccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-cc
Confidence                         1234666777777777655566666777777777777777666666777777777777777777 66


Q ss_pred             CccccCCCCCCEEEccCCcccc
Q 044158          763 PPRLVELNALAVFTVAHNNLSG  784 (892)
Q Consensus       763 p~~l~~l~~L~~l~ls~N~l~g  784 (892)
                      |.++..+++|+.|+|++|++.+
T Consensus       188 p~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCCBCC
T ss_pred             ChhHCCCCCCCEEEecCCCCCC
Confidence            7666677777777777776654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.8e-21  Score=196.32  Aligned_cols=198  Identities=23%  Similarity=0.259  Sum_probs=126.6

Q ss_pred             CCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEc
Q 044158          429 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYI  508 (892)
Q Consensus       429 ~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L  508 (892)
                      .+.+++.++++++ .+|+.+   .+++++|+|++|++++..+..|.++++|++|+|++|+++. +| .+..+++|++|++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEEC
T ss_pred             CCeEEEccCCCCC-eeCcCc---CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccc
Confidence            3444444444444 444332   1345555555555554444455555555555555555542 22 2345566666666


Q ss_pred             cCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCc
Q 044158          509 SDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNG  588 (892)
Q Consensus       509 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  588 (892)
                      ++|++++ .+..+..+++|+.|++++|.+.+..+..+..+.++++|++++|.++.++ +..+..+++|+.+++++|++++
T Consensus        85 s~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~-~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          85 SHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             CSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSC
T ss_pred             ccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceec-cccccccccchhcccccccccc
Confidence            6666653 3445566666666666666666556666667777777777777777633 4566677788888888888877


Q ss_pred             cCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCC
Q 044158          589 NIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS  635 (892)
Q Consensus       589 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  635 (892)
                      ..+..+..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++.
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            77777778888888888888887 67777777888888888888775

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=2.4e-17  Score=176.74  Aligned_cols=74  Identities=27%  Similarity=0.364  Sum_probs=46.0

Q ss_pred             eeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCc
Q 044158          702 GLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNN  781 (892)
Q Consensus       702 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~  781 (892)
                      ..+++.+.+.+.    ...+++|++|+|++|+++ .+|..   +++|+.|+|++|+|+ .+|..   +++|+.|++++|+
T Consensus       268 ~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~  335 (353)
T d1jl5a_         268 YLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNP  335 (353)
T ss_dssp             EEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSC
T ss_pred             ccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCc
Confidence            344455544422    223456777777777777 45543   456777777777777 56643   3467777787777


Q ss_pred             ccccCCc
Q 044158          782 LSGKIPE  788 (892)
Q Consensus       782 l~g~ip~  788 (892)
                      ++ .+|.
T Consensus       336 L~-~lp~  341 (353)
T d1jl5a_         336 LR-EFPD  341 (353)
T ss_dssp             CS-SCCC
T ss_pred             CC-CCCc
Confidence            76 4554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=5.9e-17  Score=173.64  Aligned_cols=69  Identities=29%  Similarity=0.434  Sum_probs=54.1

Q ss_pred             cCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEE
Q 044158          697 LESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFT  776 (892)
Q Consensus       697 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~  776 (892)
                      +++|++|++++|+++ .+|..   +++|+.|+|++|+|+ .+|..   +++|+.|++++|+|+ .+|...   ..|+.|.
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~  350 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIP---ESVEDLR  350 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCC---TTCCEEE
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccc---cccCeeE
Confidence            457999999999998 67754   568999999999998 56753   568999999999998 677643   3466655


Q ss_pred             c
Q 044158          777 V  777 (892)
Q Consensus       777 l  777 (892)
                      +
T Consensus       351 ~  351 (353)
T d1jl5a_         351 M  351 (353)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.3e-20  Score=206.38  Aligned_cols=87  Identities=21%  Similarity=0.171  Sum_probs=48.0

Q ss_pred             ccceeeccCcccccc----CCcccc-ccCCCCEEEccCccCCcc----ccccccCCCCCCEEECCCCcCcccCCcccc--
Q 044158          699 SIHGLDLSCNKLIGE----IPSRIG-ELIRIHTLNLSRNNLTGT----IPVTFSNLRQVESLDLSYNNLTGKIPPRLV--  767 (892)
Q Consensus       699 ~L~~L~Ls~N~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~--  767 (892)
                      +|+.|||++|.+++.    ++..+. ..+.|++|+|++|+++..    ++..+...++|++|||++|+++......+.  
T Consensus       341 ~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~  420 (460)
T d1z7xw1         341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES  420 (460)
T ss_dssp             SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHH
T ss_pred             chhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHH
Confidence            466677777766542    222222 244567777777776632    334455556677777777766643222221  


Q ss_pred             ---CCCCCCEEEccCCccccc
Q 044158          768 ---ELNALAVFTVAHNNLSGK  785 (892)
Q Consensus       768 ---~l~~L~~l~ls~N~l~g~  785 (892)
                         +...|+.+++++|++...
T Consensus       421 l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         421 VRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             HTSTTCCCCEEECTTCCCCHH
T ss_pred             HHhCCCccCEEECCCCCCCHH
Confidence               233567777776666543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=4.5e-17  Score=162.10  Aligned_cols=186  Identities=24%  Similarity=0.390  Sum_probs=83.2

Q ss_pred             CCCCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCC
Q 044158           47 PFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLS  126 (892)
Q Consensus        47 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~  126 (892)
                      .+.+|+.|++++|.|+..      +.+.++++|++|++++|.+++..  .+.++++|+++++++|.++ .++  .+..++
T Consensus        39 ~l~~L~~L~l~~~~i~~l------~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~--~l~~l~  107 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTI------EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVS--AIAGLQ  107 (227)
T ss_dssp             HHHTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCG--GGTTCT
T ss_pred             HcCCcCEEECCCCCCCcc------hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc-ccc--cccccc
Confidence            344555555555554422      12444555555555555554322  2455555555555555444 232  344555


Q ss_pred             CCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCc
Q 044158          127 NLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQ  206 (892)
Q Consensus       127 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~  206 (892)
                      +|+.++++++...+..   .+...+.++.+.++++.+...    ..+..+++|++|++++|.+.+..    .+.++++|+
T Consensus       108 ~L~~l~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~~----~l~~l~~L~  176 (227)
T d1h6ua2         108 SIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNI----SPLAGLTNLQYLSIGNAQVSDLT----PLANLSKLT  176 (227)
T ss_dssp             TCCEEECTTSCCCCCG---GGTTCTTCCEEECCSSCCCCC----GGGGGCTTCCEEECCSSCCCCCG----GGTTCTTCC
T ss_pred             cccccccccccccccc---hhccccchhhhhchhhhhchh----hhhccccccccccccccccccch----hhcccccce
Confidence            5555555555444331   144444555555554444322    22334444555555544433211    234444455


Q ss_pred             EEEccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEec
Q 044158          207 ELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLIL  259 (892)
Q Consensus       207 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L  259 (892)
                      +|++++|++++. + .++++++|++|++++|++++ +  ..+.++++|++|++
T Consensus       177 ~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~-i--~~l~~l~~L~~L~l  224 (227)
T d1h6ua2         177 TLKADDNKISDI-S-PLASLPNLIEVHLKNNQISD-V--SPLANTSNLFIVTL  224 (227)
T ss_dssp             EEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCB-C--GGGTTCTTCCEEEE
T ss_pred             ecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCC-C--cccccCCCCCEEEe
Confidence            555554444432 1 14444444444444444443 1  12444444444444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.6e-19  Score=201.65  Aligned_cols=389  Identities=18%  Similarity=0.123  Sum_probs=236.1

Q ss_pred             CccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCCC----CCCCCCCCCccEEEccCCcCCCCCchhhhh----c
Q 044158          331 HLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPF----RLPTRSRKNIIALDISYNKLQGHIPVEIGK----V  402 (892)
Q Consensus       331 ~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~----~  402 (892)
                      +|++|+++.+++++..-..++..+++++.|+|++|.++...    ...+..+++|++||+++|.++..-...+..    .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            45666666666665443444556677777777777665211    122356677788888877775221112222    1


Q ss_pred             CCCCcEEECcCCcCCcc----CchhccCCCCCcEEECcCCcCccccchhHhh----cCccCcEEEccCCcccccc----c
Q 044158          403 LPNLGFLTISFNAFNGS----IPSSFGDMNSLIYLDLSNNQLTGEIPEHLAM----GCFNLEYLLLSNNSLQGQL----F  470 (892)
Q Consensus       403 l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~----~~~~L~~L~L~~n~l~~~~----~  470 (892)
                      ..+|++|++++|++++.    ++..+..+++|++|++++|.+...-...+..    ...................    .
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            24688888888887643    3455677788888888888776322222111    1223344444444332211    1


Q ss_pred             ccccccCCCcEEeecCccCcCCC----Cccc-ccCCCCcEEEccCCcCCCC----ccccccCCCCCcEEECCCCcccC--
Q 044158          471 SKKINLTKLKRLNLDGNHFIGGI----PESL-SNCSSLQGLYISDNDISGS----IPTWMGNISFLDAIIMPDNHLEG--  539 (892)
Q Consensus       471 ~~~~~l~~L~~L~L~~n~~~~~~----~~~~-~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~--  539 (892)
                      ..+.....++.++++.+......    ...+ ........+++..+.+...    ....+...+.++.+.+++|.+..  
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            22334567778888777653211    0111 1223566777777766532    11234456778888888887642  


Q ss_pred             ---CCcccccCCCCCcEEeCCCCccCCCc---ccccccCCCCccEEEccCCccCccCChhh-----hcCCCCCEEecccc
Q 044158          540 ---PIPSEFCQLDYLEILDLSKNNIAGRP---LNGAFSKCSYLLTLDLCNNRLNGNIPNWM-----GRLSQLRYLILANN  608 (892)
Q Consensus       540 ---~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~~~~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~L~~n  608 (892)
                         ..+........++.+++++|.+....   ....+...+.++.+++++|.++......+     ...+.|+.+++++|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence               22333455678999999999876422   12345567889999999998864322222     23467999999999


Q ss_pred             cccccCCcc----ccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEee
Q 044158          609 NFEGEVPLR----LCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFT  684 (892)
Q Consensus       609 ~l~~~~~~~----~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (892)
                      .++......    +...++|++|+|++|+++..-...+...                                       
T Consensus       323 ~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~---------------------------------------  363 (460)
T d1z7xw1         323 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG---------------------------------------  363 (460)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHH---------------------------------------
T ss_pred             chhhhhhhhcccccccccchhhhheeeecccCcccchhhhh---------------------------------------
Confidence            887554333    3456789999999998863211111000                                       


Q ss_pred             ecccccccCCCCcCccceeeccCcccccc----CCccccccCCCCEEEccCccCCccccccc----c-CCCCCCEEECCC
Q 044158          685 TKERSYTYKGQPLESIHGLDLSCNKLIGE----IPSRIGELIRIHTLNLSRNNLTGTIPVTF----S-NLRQVESLDLSY  755 (892)
Q Consensus       685 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~-~l~~L~~LdLs~  755 (892)
                              .....+.|+.|+|++|.+++.    ++..+...++|++|+|++|+++......+    . +.+.|+.|++++
T Consensus       364 --------l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~  435 (460)
T d1z7xw1         364 --------LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD  435 (460)
T ss_dssp             --------HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             --------hhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCC
Confidence                    001123588999999999753    45557778999999999999986444333    2 445799999999


Q ss_pred             CcCcccCCccc
Q 044158          756 NNLTGKIPPRL  766 (892)
Q Consensus       756 N~l~g~ip~~l  766 (892)
                      |.+....+..+
T Consensus       436 ~~~~~~~~~~l  446 (460)
T d1z7xw1         436 IYWSEEMEDRL  446 (460)
T ss_dssp             CCCCHHHHHHH
T ss_pred             CCCCHHHHHHH
Confidence            99986554443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.3e-17  Score=168.23  Aligned_cols=216  Identities=16%  Similarity=0.104  Sum_probs=115.5

Q ss_pred             cEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEcc
Q 044158          382 IALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS  461 (892)
Q Consensus       382 ~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~  461 (892)
                      +.++.++..++ .+|..+   ++++++|++++|.++...+.+|.++++|++|++++|.+...++...|.+++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            35566666666 666554   34677777877777765555677777788888877777655666556667777777664


Q ss_pred             C-CcccccccccccccCCCcEEeecCccCcCCCC-cccccCCCCcEEEccCCcCCCCccccccCCC-CCcEEECCCCccc
Q 044158          462 N-NSLQGQLFSKKINLTKLKRLNLDGNHFIGGIP-ESLSNCSSLQGLYISDNDISGSIPTWMGNIS-FLDAIIMPDNHLE  538 (892)
Q Consensus       462 ~-n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~  538 (892)
                      . |.+....+..|.++++|+.+++++|.+....+ ..+..++.+..+...++.+....+..+..++ .++.+++++|+++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            3 55666666666677777777777776653322 1233344444445555555543344444432 4555555555554


Q ss_pred             CCCcccccCCCCCcEE-eCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEE
Q 044158          539 GPIPSEFCQLDYLEIL-DLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYL  603 (892)
Q Consensus       539 ~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  603 (892)
                      ...+..+ ...+++++ ++++|+++.++ +..|.++++|++|++++|+++...+..|.++++|+.+
T Consensus       167 ~i~~~~~-~~~~l~~~~~l~~n~l~~l~-~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         167 EIHNCAF-NGTQLDELNLSDNNNLEELP-NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             EECTTTT-TTCCEEEEECTTCTTCCCCC-TTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESS
T ss_pred             ccccccc-cchhhhcccccccccccccc-HHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccC
Confidence            3322222 22222222 33444444321 2234444445555554444443222233333333333

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.5e-16  Score=158.21  Aligned_cols=208  Identities=25%  Similarity=0.363  Sum_probs=169.5

Q ss_pred             CCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCC
Q 044158           49 QQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNL  128 (892)
Q Consensus        49 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L  128 (892)
                      .++..++++.+.+++...      +..+.+|++|++++|+++..  +.+.++++|++|++++|.+++ ++  .+..+++|
T Consensus        19 ~~~~~~~l~~~~~~d~~~------~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~-~~--~l~~l~~l   87 (227)
T d1h6ua2          19 ANAIKIAAGKSNVTDTVT------QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITD-LA--PLKNLTKI   87 (227)
T ss_dssp             HHHHHHHTTCSSTTSEEC------HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CG--GGTTCCSC
T ss_pred             HHHHHHHhCCCCcCCcCC------HHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeec-cc--cccccccc
Confidence            344456777777765432      46688999999999999864  569999999999999999883 43  48999999


Q ss_pred             CEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEE
Q 044158          129 EGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQEL  208 (892)
Q Consensus       129 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L  208 (892)
                      +++++++|.++.+  + .+.++++|++++++++...+.    ..+...+.++.+.++.+.+....    .+...++|++|
T Consensus        88 ~~l~~~~n~~~~i--~-~l~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~L~~L  156 (227)
T d1h6ua2          88 TELELSGNPLKNV--S-AIAGLQSIKTLDLTSTQITDV----TPLAGLSNLQVLYLDLNQITNIS----PLAGLTNLQYL  156 (227)
T ss_dssp             CEEECCSCCCSCC--G-GGTTCTTCCEEECTTSCCCCC----GGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCCEE
T ss_pred             ccccccccccccc--c-ccccccccccccccccccccc----chhccccchhhhhchhhhhchhh----hhccccccccc
Confidence            9999999999875  3 488999999999999988754    45677899999999998775443    46778999999


Q ss_pred             EccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccC
Q 044158          209 YIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRE  286 (892)
Q Consensus       209 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~  286 (892)
                      ++++|.+.+..  .++++++|++|++++|++++   ...++.+++|++|++++|+++..   ..+.++++|+.+++++
T Consensus       157 ~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~---l~~l~~l~~L~~L~Ls~N~lt~i---~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         157 SIGNAQVSDLT--PLANLSKLTTLKADDNKISD---ISPLASLPNLIEVHLKNNQISDV---SPLANTSNLFIVTLTN  226 (227)
T ss_dssp             ECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC---CGGGGGCTTCCEEECTTSCCCBC---GGGTTCTTCCEEEEEE
T ss_pred             cccccccccch--hhcccccceecccCCCccCC---ChhhcCCCCCCEEECcCCcCCCC---cccccCCCCCEEEeeC
Confidence            99999887544  38899999999999999976   34588999999999999998743   3477889999988753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.6e-16  Score=155.50  Aligned_cols=181  Identities=25%  Similarity=0.396  Sum_probs=123.1

Q ss_pred             EEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEe
Q 044158           53 SLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLD  132 (892)
Q Consensus        53 ~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~  132 (892)
                      ..++..+.+++....      ..+.+|++|++++|.+++.  ..+..+++|++|++++|.++ .++  .++.+++|++|+
T Consensus        28 ~~~l~~~~~~~~~~~------~~L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~-~l~--~~~~l~~L~~L~   96 (210)
T d1h6ta2          28 KDNLKKKSVTDAVTQ------NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIK--PLANLKNLGWLF   96 (210)
T ss_dssp             HHHTTCSCTTSEECH------HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEE
T ss_pred             HHHhCcCccCCccCH------HHhcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCcccc-Ccc--ccccCccccccc
Confidence            345555555543321      2356778888888877653  34777888888888888776 344  467778888888


Q ss_pred             CCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccC
Q 044158          133 MSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDH  212 (892)
Q Consensus       133 L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~  212 (892)
                      +++|+++++  + .+.++++|+.|++++|.+...    ..+..+++++.+++++|.+.+..    .+..+++|+++++++
T Consensus        97 l~~n~i~~l--~-~l~~l~~L~~L~l~~~~~~~~----~~l~~l~~l~~l~~~~n~l~~~~----~~~~l~~L~~l~l~~  165 (210)
T d1h6ta2          97 LDENKVKDL--S-SLKDLKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLED  165 (210)
T ss_dssp             CCSSCCCCG--G-GGTTCTTCCEEECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCS
T ss_pred             ccccccccc--c-ccccccccccccccccccccc----ccccccccccccccccccccccc----ccccccccccccccc
Confidence            888887765  3 377778888888887777643    45667777888888777765432    355677788888887


Q ss_pred             CcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEecc
Q 044158          213 NDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILS  260 (892)
Q Consensus       213 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~  260 (892)
                      |++++..  .+.++++|++|++++|++++ +  ..+..+++|++|+|+
T Consensus       166 n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l--~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         166 NQISDIV--PLAGLTKLQNLYLSKNHISD-L--RALAGLKNLDVLELF  208 (210)
T ss_dssp             SCCCCCG--GGTTCTTCCEEECCSSCCCB-C--GGGTTCTTCSEEEEE
T ss_pred             ccccccc--cccCCCCCCEEECCCCCCCC-C--hhhcCCCCCCEEEcc
Confidence            7776543  26777778888887777764 3  346677777777765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.6e-17  Score=162.44  Aligned_cols=201  Identities=17%  Similarity=0.069  Sum_probs=109.0

Q ss_pred             CCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccC-CccCccCChhhhcCCCCCEEe
Q 044158          526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCN-NRLNGNIPNWMGRLSQLRYLI  604 (892)
Q Consensus       526 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~  604 (892)
                      ++++|++++|+++...+.+|.++++|++|++++|.+.....+..|.+++.++++.+.. |.+....+..+.++++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            3444444444444333334555555666666665554422234555666666666543 455555555566666666666


Q ss_pred             cccccccccCCc-cccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEe
Q 044158          605 LANNNFEGEVPL-RLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDF  683 (892)
Q Consensus       605 L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (892)
                      +++|.+....+. .+..++.+..+..+++++...-+..+...                                      
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~--------------------------------------  151 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL--------------------------------------  151 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTS--------------------------------------
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccc--------------------------------------
Confidence            666666532221 12233444444444544431111111110                                      


Q ss_pred             eecccccccCCCCcCccceeeccCccccccCCccccccCCCCE-EEccCccCCccccccccCCCCCCEEECCCCcCcccC
Q 044158          684 TTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHT-LNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKI  762 (892)
Q Consensus       684 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~i  762 (892)
                                   ...++.+++++|+++...+ ......+++. +++++|+++...+..|.++++|++||+++|+|+...
T Consensus       152 -------------~~~l~~L~l~~n~l~~i~~-~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~  217 (242)
T d1xwdc1         152 -------------SFESVILWLNKNGIQEIHN-CAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP  217 (242)
T ss_dssp             -------------BSSCEEEECCSSCCCEECT-TTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCC
T ss_pred             -------------cccceeeeccccccccccc-ccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccC
Confidence                         1136667788888874433 3333444444 456777787555566788888888888888888555


Q ss_pred             CccccCCCCCCEEEcc
Q 044158          763 PPRLVELNALAVFTVA  778 (892)
Q Consensus       763 p~~l~~l~~L~~l~ls  778 (892)
                      +..|.+++.|+++++.
T Consensus       218 ~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         218 SYGLENLKKLRARSTY  233 (242)
T ss_dssp             SSSCTTCCEEESSSEE
T ss_pred             HHHHcCCcccccCcCC
Confidence            5567777777666554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=3.2e-16  Score=151.94  Aligned_cols=179  Identities=26%  Similarity=0.364  Sum_probs=108.9

Q ss_pred             cEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEE
Q 044158           52 ESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGL  131 (892)
Q Consensus        52 ~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L  131 (892)
                      ..+.++.+.+++...      ...++++++|++++|+++..  +.+..+++|++|++++|.+++ ++  .++++++|++|
T Consensus        21 i~~~l~~~~~~~~~~------~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~-~~--~l~~l~~L~~L   89 (199)
T d2omxa2          21 MKTVLGKTNVTDTVS------QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-IT--PLKNLTKLVDI   89 (199)
T ss_dssp             HHHHTTCSSTTSEEC------HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CG--GGTTCTTCCEE
T ss_pred             HHHHhCCCCCCCccC------HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccC-cc--cccCCcccccc
Confidence            334555555554332      23456677777777776642  346667777777777777662 33  36677777777


Q ss_pred             eCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEcc
Q 044158          132 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYID  211 (892)
Q Consensus       132 ~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~  211 (892)
                      ++++|.+...  + .+.++++|++|+++++.+...    ..+..+++|+.|++++|.+...    ..+..+++|++|++.
T Consensus        90 ~l~~n~~~~~--~-~l~~l~~L~~L~l~~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~----~~l~~~~~L~~L~l~  158 (199)
T d2omxa2          90 LMNNNQIADI--T-PLANLTNLTGLTLFNNQITDI----DPLKNLTNLNRLELSSNTISDI----SALSGLTSLQQLNFS  158 (199)
T ss_dssp             ECCSSCCCCC--G-GGTTCTTCSEEECCSSCCCCC----GGGTTCTTCSEEECCSSCCCCC----GGGTTCTTCSEEECC
T ss_pred             cccccccccc--c-ccccccccccccccccccccc----cccchhhhhHHhhhhhhhhccc----ccccccccccccccc
Confidence            7777766654  2 266777777777776666543    3455667777777777665432    135566677777777


Q ss_pred             CCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEE
Q 044158          212 HNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELL  257 (892)
Q Consensus       212 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  257 (892)
                      +|.+++..  .++++++|++|++++|++++ +  ..++.+++|++|
T Consensus       159 ~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i--~~l~~L~~L~~L  199 (199)
T d2omxa2         159 SNQVTDLK--PLANLTTLERLDISSNKVSD-I--SVLAKLTNLESL  199 (199)
T ss_dssp             SSCCCCCG--GGTTCTTCCEEECCSSCCCC-C--GGGGGCTTCSEE
T ss_pred             cccccCCc--cccCCCCCCEEECCCCCCCC-C--ccccCCCCCCcC
Confidence            77666532  26666777777777776654 2  345556666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=4.3e-17  Score=157.23  Aligned_cols=109  Identities=20%  Similarity=0.235  Sum_probs=65.2

Q ss_pred             ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 044158          699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA  778 (892)
Q Consensus       699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls  778 (892)
                      .|+.|+|++|++++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+.+..+... -...++.+.+.
T Consensus        79 ~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~  157 (192)
T d1w8aa_          79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLN  157 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCS
T ss_pred             ccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-Hhhhhhhhccc
Confidence            45556666666665556667777777777777777777667777777777777777777764432211 11234455566


Q ss_pred             CCcccccCCccccccCCCCcccccCCCCCCCCC
Q 044158          779 HNNLSGKIPERIAQFATFDEDSYEGNPFLCGPP  811 (892)
Q Consensus       779 ~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~  811 (892)
                      .|.+++..|..   +......++..|.+.|.++
T Consensus       158 ~~~~~c~~p~~---l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         158 GGAARCGAPSK---VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             GGGCBBCSSTT---TTTSBGGGSCTTTCCCCCC
T ss_pred             CCCeEeCCChh---hcCCEeeecCHhhCcCCCC
Confidence            66666666642   2333344555666656543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=7.3e-16  Score=149.41  Aligned_cols=163  Identities=28%  Similarity=0.413  Sum_probs=138.4

Q ss_pred             CCCCCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCC
Q 044158           46 TPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSL  125 (892)
Q Consensus        46 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l  125 (892)
                      +.++++++|+++++.++..      +.+..+++|++|++++|++++..  .++++++|++|++++|.+. .++  .+.++
T Consensus        37 ~~l~~l~~L~l~~~~i~~l------~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~-~~~--~l~~l  105 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI------DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DIT--PLANL  105 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCG--GGTTC
T ss_pred             HHhcCCCEEECCCCCCCCc------cccccCCCcCcCccccccccCcc--cccCCcccccccccccccc-ccc--ccccc
Confidence            4578999999999998754      34778999999999999998754  3899999999999999887 455  58999


Q ss_pred             CCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCC
Q 044158          126 SNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHL  205 (892)
Q Consensus       126 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L  205 (892)
                      ++|++|++++|.+....   .+.++++|+.|++++|.+...    +.+..+++|++|++.+|.+++..    .++++++|
T Consensus       106 ~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~----~~l~~~~~L~~L~l~~n~l~~l~----~l~~l~~L  174 (199)
T d2omxa2         106 TNLTGLTLFNNQITDID---PLKNLTNLNRLELSSNTISDI----SALSGLTSLQQLNFSSNQVTDLK----PLANLTTL  174 (199)
T ss_dssp             TTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCCCCC----GGGTTCTTCSEEECCSSCCCCCG----GGTTCTTC
T ss_pred             ccccccccccccccccc---ccchhhhhHHhhhhhhhhccc----ccccccccccccccccccccCCc----cccCCCCC
Confidence            99999999999988752   388999999999999998753    46888999999999999887643    47899999


Q ss_pred             cEEEccCCcCccCccccccCCCCCcEE
Q 044158          206 QELYIDHNDFIGSLPWCLANLTSLRVL  232 (892)
Q Consensus       206 ~~L~L~~n~l~~~~~~~l~~l~~L~~L  232 (892)
                      ++|++++|++++. + .++++++|++|
T Consensus       175 ~~L~ls~N~i~~i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         175 ERLDISSNKVSDI-S-VLAKLTNLESL  199 (199)
T ss_dssp             CEEECCSSCCCCC-G-GGGGCTTCSEE
T ss_pred             CEEECCCCCCCCC-c-cccCCCCCCcC
Confidence            9999999998764 3 48889999876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=4e-16  Score=152.66  Aligned_cols=166  Identities=27%  Similarity=0.381  Sum_probs=141.4

Q ss_pred             CCCCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCC
Q 044158           47 PFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLS  126 (892)
Q Consensus        47 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~  126 (892)
                      .+.+|++|+++++.++...      .+..+++|++|+|++|++++..  .++++++|++|++++|+++ .++  .+..++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~------~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~  112 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLS--SLKDLK  112 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGG--GGTTCT
T ss_pred             HhcCccEEECcCCCCCCch------hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc-ccc--cccccc
Confidence            4678999999999987543      3678999999999999998743  4789999999999999998 455  589999


Q ss_pred             CCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCc
Q 044158          127 NLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQ  206 (892)
Q Consensus       127 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~  206 (892)
                      +|+.|++++|.+...  + .+.++++|+.+++++|.+++.    ..+..+++|+++++++|.+.+..    .++++++|+
T Consensus       113 ~L~~L~l~~~~~~~~--~-~l~~l~~l~~l~~~~n~l~~~----~~~~~l~~L~~l~l~~n~l~~i~----~l~~l~~L~  181 (210)
T d1h6ta2         113 KLKSLSLEHNGISDI--N-GLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISDIV----PLAGLTKLQ  181 (210)
T ss_dssp             TCCEEECTTSCCCCC--G-GGGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCCG----GGTTCTTCC
T ss_pred             ccccccccccccccc--c-ccccccccccccccccccccc----ccccccccccccccccccccccc----cccCCCCCC
Confidence            999999999998765  3 488999999999999999864    45678999999999999987542    478899999


Q ss_pred             EEEccCCcCccCccccccCCCCCcEEeCCC
Q 044158          207 ELYIDHNDFIGSLPWCLANLTSLRVLHVPD  236 (892)
Q Consensus       207 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  236 (892)
                      +|++++|.+++ ++ .+..+++|++|++++
T Consensus       182 ~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         182 NLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             EEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             EEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            99999999975 44 589999999999863

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=2.6e-16  Score=151.64  Aligned_cols=170  Identities=25%  Similarity=0.371  Sum_probs=78.1

Q ss_pred             EEECcCCcCccccchhHhhcCccCcEEEccCCccccc-ccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccC
Q 044158          432 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQ-LFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISD  510 (892)
Q Consensus       432 ~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~  510 (892)
                      .++.++++++ .+|..+   .+++++|+|++|++++. .+..|.++++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus        12 ~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4555555555 455433   13444555555544432 233344444445555544444444444444444555555555


Q ss_pred             CcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccC
Q 044158          511 NDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNI  590 (892)
Q Consensus       511 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  590 (892)
                      |+++...+..|.++++|++|+|++|++++..+.                         +|..+++|++|+|++|.+....
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~-------------------------~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-------------------------SFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-------------------------SSTTCTTCCEEECTTCCBCCSG
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHH-------------------------HhcCCccccccccccccccccc
Confidence            544444344444444444444444444433333                         4444444445555444444221


Q ss_pred             C-hhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCC
Q 044158          591 P-NWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS  635 (892)
Q Consensus       591 p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  635 (892)
                      + .++.  ..++.+.+..+.++...|..   +..++.++|+.|.+.
T Consensus       143 ~~~~~~--~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         143 HLAWFA--EWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFK  183 (192)
T ss_dssp             GGHHHH--HHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCC
T ss_pred             chHHHh--hhhhhhcccCCCeEeCCChh---hcCCEeeecCHhhCc
Confidence            1 1221  12344445555555555543   344555666666665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.8e-16  Score=158.25  Aligned_cols=223  Identities=15%  Similarity=0.169  Sum_probs=129.1

Q ss_pred             cEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECc
Q 044158          333 EFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTIS  412 (892)
Q Consensus       333 ~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~  412 (892)
                      +.+|++++.+.......++.  ..+..+.+......... .......+|++||++++.+++.....++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            35677766655444443332  23456666655544322 2233456899999999888755555666678999999999


Q ss_pred             CCcCCccCchhccCCCCCcEEECcCC-cCccccchhHhhcCccCcEEEccCCc-cccc-cccccc-ccCCCcEEeecCcc
Q 044158          413 FNAFNGSIPSSFGDMNSLIYLDLSNN-QLTGEIPEHLAMGCFNLEYLLLSNNS-LQGQ-LFSKKI-NLTKLKRLNLDGNH  488 (892)
Q Consensus       413 ~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~i~~~~~~~~~~L~~L~L~~n~-l~~~-~~~~~~-~l~~L~~L~L~~n~  488 (892)
                      +|.+.+..+..++.+++|++|+++++ .+++..-..+..++++|++|++++|. ++.. ....+. .+++|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            99988777888888999999999986 45532223344568888888888863 4322 112222 24667777777653


Q ss_pred             --CcCC-CCcccccCCCCcEEEccCCc-CCCCccccccCCCCCcEEECCCC-cccCCCcccccCCCCCcEEeCCC
Q 044158          489 --FIGG-IPESLSNCSSLQGLYISDND-ISGSIPTWMGNISFLDAIIMPDN-HLEGPIPSEFCQLDYLEILDLSK  558 (892)
Q Consensus       489 --~~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~  558 (892)
                        ++.. +...+.++++|++|++++|. +++.....+..+++|++|++++| .+++.....++++++|++|++++
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~  234 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  234 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeC
Confidence              2211 12223456666777666653 44344444444444444444443 23333233333334444444433

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.4e-15  Score=156.35  Aligned_cols=257  Identities=18%  Similarity=0.197  Sum_probs=173.0

Q ss_pred             cEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEcc
Q 044158          382 IALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS  461 (892)
Q Consensus       382 ~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~  461 (892)
                      +++|++++.+.......+..  ..+..+.++......... ......+|++|+++++.+.+.....++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            36777777665333333333  245667776665543322 233456899999999888755555667788999999999


Q ss_pred             CCcccccccccccccCCCcEEeecCcc-CcCC-CCcccccCCCCcEEEccCCc-CCCC-ccccc-cCCCCCcEEECCCCc
Q 044158          462 NNSLQGQLFSKKINLTKLKRLNLDGNH-FIGG-IPESLSNCSSLQGLYISDND-ISGS-IPTWM-GNISFLDAIIMPDNH  536 (892)
Q Consensus       462 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~-~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~-~~~~~L~~L~L~~n~  536 (892)
                      +|.+++..+..+..+++|++|++++|. ++.. +......+++|++|++++|. ++.. +...+ ..++.|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            999888778888888999999999864 3321 12234578999999999874 3321 12222 235789999998763


Q ss_pred             --ccCC-CcccccCCCCCcEEeCCCCc-cCCCcccccccCCCCccEEEccCC-ccCccCChhhhcCCCCCEEeccccccc
Q 044158          537 --LEGP-IPSEFCQLDYLEILDLSKNN-IAGRPLNGAFSKCSYLLTLDLCNN-RLNGNIPNWMGRLSQLRYLILANNNFE  611 (892)
Q Consensus       537 --l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~  611 (892)
                        ++.. +......+++|++|++++|. +++ .....+..+++|++|++++| .+++.....++++++|+.|+++++.-.
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd-~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d  238 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD  238 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCT
T ss_pred             cccccccccccccccccccccccccccCCCc-hhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCH
Confidence              3322 22334568899999999874 665 44567788999999999995 576666667888999999999988322


Q ss_pred             ccCCccccCCCCCCEEEcCCCcCCCCCCccccCC
Q 044158          612 GEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNT  645 (892)
Q Consensus       612 ~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~  645 (892)
                      +.++.....+++|+   +..+++++..++.+++.
T Consensus       239 ~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~~  269 (284)
T d2astb2         239 GTLQLLKEALPHLQ---INCSHFTTIARPTIGNK  269 (284)
T ss_dssp             TCHHHHHHHSTTSE---ESCCCSCCTTCSSCSST
T ss_pred             HHHHHHHHhCcccc---ccCccCCCCCCCccCcc
Confidence            22222223456554   57788887766666543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=3.8e-14  Score=124.50  Aligned_cols=105  Identities=25%  Similarity=0.356  Sum_probs=72.9

Q ss_pred             cEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEE
Q 044158           52 ESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGL  131 (892)
Q Consensus        52 ~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L  131 (892)
                      |+|||++|+++...      .+.++++|++|++++|+++. +|+.++.+++|++|++++|.++ .++  .+..+++|++|
T Consensus         1 R~L~Ls~n~l~~l~------~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~-~l~--~~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTVLC------HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVD--GVANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSSCC------CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCC-CCG--GGTTCSSCCEE
T ss_pred             CEEEcCCCCCCCCc------ccccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccc-ccC--ccccccccCeE
Confidence            56777777776442      25667777788888777764 4566777777777777777776 444  47777777777


Q ss_pred             eCCCCCCCCccccccccCCCCCcEEeCCCCcCCCC
Q 044158          132 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDG  166 (892)
Q Consensus       132 ~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~  166 (892)
                      ++++|++++......+..+++|++|++++|.++..
T Consensus        71 ~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             ECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            77777777654334466777777777777776643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.1e-14  Score=131.82  Aligned_cols=132  Identities=22%  Similarity=0.241  Sum_probs=83.9

Q ss_pred             cCCCCCCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhc
Q 044158           44 LFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELD  123 (892)
Q Consensus        44 ~f~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~  123 (892)
                      .|.+...+|+|||++|+|+.+..     .+..+++|++|+|++|+++..  +.|..+++|++|++++|.++ .++...+.
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~-----~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~   84 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIEN-----LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQ   84 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCC-----GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHH
T ss_pred             hccCcCcCcEEECCCCCCCccCc-----cccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCccccc
Confidence            35566777778888877776532     135677777777777777643  45777777777777777776 45554566


Q ss_pred             CCCCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccc-cccccCCCCCCEEE
Q 044158          124 SLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKV-LHSIGSFPSLKTLY  183 (892)
Q Consensus       124 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~l~~l~~L~~L~  183 (892)
                      .+++|++|++++|+++.......+..+++|++|++++|.++..... ...+..+|+|++||
T Consensus        85 ~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          85 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            6777777777777776653223466667777777777766543111 11344555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.2e-13  Score=127.73  Aligned_cols=112  Identities=17%  Similarity=0.105  Sum_probs=55.1

Q ss_pred             ccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCc
Q 044158          473 KINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE  552 (892)
Q Consensus       473 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  552 (892)
                      |.++.++++|+|++|+++. ++..+..+++|+.|++++|+++..  +.+..+++|+.|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            3445556666666666553 344445556666666666665522  2344445555555555555433333334455555


Q ss_pred             EEeCCCCccCCCcccccccCCCCccEEEccCCccC
Q 044158          553 ILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLN  587 (892)
Q Consensus       553 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~  587 (892)
                      +|++++|+++.++.-..+..+++|++|++++|.++
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cceeccccccccccccccccccccchhhcCCCccc
Confidence            55555555543221123444444444444444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.42  E-value=3.3e-14  Score=150.92  Aligned_cols=253  Identities=18%  Similarity=0.138  Sum_probs=139.1

Q ss_pred             ccccccCCCcEEeecCccCcCC----CCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCccccc
Q 044158          471 SKKINLTKLKRLNLDGNHFIGG----IPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFC  546 (892)
Q Consensus       471 ~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  546 (892)
                      ..+.....|+.|+|++|.+...    +...+...++|+.++++++...........              ....+...+.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~--------------~~~~l~~~l~   90 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPE--------------ALRLLLQALL   90 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHH--------------HHHHHHHHHT
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccch--------------HHHHHHHHHh
Confidence            3455566777777777765432    123345566777777766544321100000              0001112334


Q ss_pred             CCCCCcEEeCCCCccCCCc---ccccccCCCCccEEEccCCccCccCCh-------------hhhcCCCCCEEecccccc
Q 044158          547 QLDYLEILDLSKNNIAGRP---LNGAFSKCSYLLTLDLCNNRLNGNIPN-------------WMGRLSQLRYLILANNNF  610 (892)
Q Consensus       547 ~l~~L~~L~Ls~n~l~~~~---~~~~~~~~~~L~~L~L~~n~l~~~~p~-------------~~~~l~~L~~L~L~~n~l  610 (892)
                      .+++|+.|+|++|.++...   +...+..+++|+.|++++|.+......             .....+.|+.+++++|++
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i  170 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  170 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             hCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccc
Confidence            4555666666666554421   122334456666666666655321110             112356677777777766


Q ss_pred             ccc----CCccccCCCCCCEEEcCCCcCCCCCCc-cccCCcccccccccccccccccccccccccCCCCCCCcceeEeee
Q 044158          611 EGE----VPLRLCQLQKLRLLDLSHNNFSGQIPP-CLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTT  685 (892)
Q Consensus       611 ~~~----~~~~~~~l~~L~~L~Ls~N~l~g~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (892)
                      +..    +...+...+.|+.|+|++|+++..-.. .+...                                        
T Consensus       171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~----------------------------------------  210 (344)
T d2ca6a1         171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG----------------------------------------  210 (344)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT----------------------------------------
T ss_pred             cccccccccchhhhhhhhcccccccccccccccccchhhh----------------------------------------
Confidence            522    222344567777777777776511000 00000                                        


Q ss_pred             cccccccCCCCcCccceeeccCcccccc----CCccccccCCCCEEEccCccCCcccccc----cc--CCCCCCEEECCC
Q 044158          686 KERSYTYKGQPLESIHGLDLSCNKLIGE----IPSRIGELIRIHTLNLSRNNLTGTIPVT----FS--NLRQVESLDLSY  755 (892)
Q Consensus       686 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~--~l~~L~~LdLs~  755 (892)
                              ....+.|+.|++++|.++..    +...+..+++|++|+|++|.+++.-...    +.  ....|+.||+++
T Consensus       211 --------l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~  282 (344)
T d2ca6a1         211 --------LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY  282 (344)
T ss_dssp             --------GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCS
T ss_pred             --------hcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCC
Confidence                    01233577788888877533    3445677888999999999887543322    22  246799999999


Q ss_pred             CcCccc----CCcccc-CCCCCCEEEccCCccccc
Q 044158          756 NNLTGK----IPPRLV-ELNALAVFTVAHNNLSGK  785 (892)
Q Consensus       756 N~l~g~----ip~~l~-~l~~L~~l~ls~N~l~g~  785 (892)
                      |+|+..    +...+. +.+.|++|++++|+++..
T Consensus       283 N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         283 NEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             SCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             CcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            988743    233342 567899999999988643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=8.7e-13  Score=115.63  Aligned_cols=102  Identities=23%  Similarity=0.314  Sum_probs=49.6

Q ss_pred             EEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCc
Q 044158          481 RLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNN  560 (892)
Q Consensus       481 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  560 (892)
                      .|++++|+++. ++ .+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+++ +| .+..+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            34444444442 22 2444555555555555554 233344444444444444444442 22 25555555555555555


Q ss_pred             cCCCcccccccCCCCccEEEccCCccC
Q 044158          561 IAGRPLNGAFSKCSYLLTLDLCNNRLN  587 (892)
Q Consensus       561 l~~~~~~~~~~~~~~L~~L~L~~n~l~  587 (892)
                      ++.++....+..+++|++|++++|+++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            554333334555555555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.39  E-value=1.1e-13  Score=146.72  Aligned_cols=136  Identities=20%  Similarity=0.232  Sum_probs=84.5

Q ss_pred             CCCCcEEEccCCcCCCC----ccccccCCCCCcEEECCCCcccCC-----CcccccCCCCCcEEeCCCCccCCC---ccc
Q 044158          500 CSSLQGLYISDNDISGS----IPTWMGNISFLDAIIMPDNHLEGP-----IPSEFCQLDYLEILDLSKNNIAGR---PLN  567 (892)
Q Consensus       500 l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~---~~~  567 (892)
                      .+.|+.+++++|++...    +...+...+.|+.|++++|.++..     +...+..+++|+.|++++|.++..   .+.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            44566666666655422    222334455666666666665431     233456677788888888876531   123


Q ss_pred             ccccCCCCccEEEccCCccCccCCh----hhhc--CCCCCEEecccccccccC----Ccccc-CCCCCCEEEcCCCcCC
Q 044158          568 GAFSKCSYLLTLDLCNNRLNGNIPN----WMGR--LSQLRYLILANNNFEGEV----PLRLC-QLQKLRLLDLSHNNFS  635 (892)
Q Consensus       568 ~~~~~~~~L~~L~L~~n~l~~~~p~----~~~~--l~~L~~L~L~~n~l~~~~----~~~~~-~l~~L~~L~Ls~N~l~  635 (892)
                      ..+..+++|++|++++|.+++.-..    .+..  .+.|++|++++|+++...    ...+. ++++|++|+|++|++.
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            4567778888888888887754222    2332  357889999998876432    22332 5678999999999986

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=6.8e-12  Score=114.90  Aligned_cols=111  Identities=16%  Similarity=0.178  Sum_probs=91.9

Q ss_pred             cceeeccCccccccCCccccccCCCCEEEccCc-cCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 044158          700 IHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRN-NLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA  778 (892)
Q Consensus       700 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls  778 (892)
                      .+.++.+++++. ..|..+..+++|++|++++| .++...+..|.++++|+.|+|++|+|++..|.+|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            456888888887 57888889999999999876 4887777889999999999999999998888899999999999999


Q ss_pred             CCcccccCCccccccCCCCcccccCCCCCCCCCC
Q 044158          779 HNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPL  812 (892)
Q Consensus       779 ~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~l  812 (892)
                      +|+|+...+. .-+...+....+.|||+-|+|.+
T Consensus        89 ~N~l~~l~~~-~~~~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          89 FNALESLSWK-TVQGLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             SSCCSCCCST-TTCSCCCCEEECCSSCCCCCGGG
T ss_pred             CCCCcccChh-hhccccccccccCCCcccCCchH
Confidence            9999854444 33334577788999999998753

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=4.1e-13  Score=128.85  Aligned_cols=131  Identities=24%  Similarity=0.325  Sum_probs=91.3

Q ss_pred             cCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccccccccccccccccccccccc
Q 044158          589 NIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVS  668 (892)
Q Consensus       589 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  668 (892)
                      .+|..+..+++|++|+|++|+++ .++ .+..+++|+.|++++|+++ .+|....                         
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~-------------------------   90 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDA-------------------------   90 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHH-------------------------
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccc-------------------------
Confidence            34556777778888888888877 343 4777788888888888775 3332111                         


Q ss_pred             ccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCcccc-ccccCCCC
Q 044158          669 YNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIP-VTFSNLRQ  747 (892)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~  747 (892)
                                                 ..+.|+.|++++|+++. + +.+..+++|+.|++++|+++.... ..++.+++
T Consensus        91 ---------------------------~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~  141 (198)
T d1m9la_          91 ---------------------------VADTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK  141 (198)
T ss_dssp             ---------------------------HHHHCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTT
T ss_pred             ---------------------------ccccccccccccccccc-c-ccccccccccccccccchhccccccccccCCCc
Confidence                                       11247778888888874 3 347788888999999998885432 46788888


Q ss_pred             CCEEECCCCcCcccCCcc----------ccCCCCCCEEE
Q 044158          748 VESLDLSYNNLTGKIPPR----------LVELNALAVFT  776 (892)
Q Consensus       748 L~~LdLs~N~l~g~ip~~----------l~~l~~L~~l~  776 (892)
                      |+.|++++|++....+..          +..+++|+.||
T Consensus       142 L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             CSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            999999998887554432          55677788776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=3e-13  Score=129.81  Aligned_cols=129  Identities=25%  Similarity=0.256  Sum_probs=85.4

Q ss_pred             CcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCC
Q 044158          494 PESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKC  573 (892)
Q Consensus       494 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  573 (892)
                      +..+..+++|++|++++|+++.. + .+..+++|+.|++++|.++ .+|..+..+++|++|++++|+++.+   ..+..+
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l---~~~~~l  114 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL---SGIEKL  114 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH---HHHHHH
T ss_pred             hhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-ccccccccccccccccccccccccc---cccccc
Confidence            34555666666666666666532 2 3555666666666666665 3344444456788888888888753   246777


Q ss_pred             CCccEEEccCCccCccCC-hhhhcCCCCCEEecccccccccCCcc----------ccCCCCCCEEE
Q 044158          574 SYLLTLDLCNNRLNGNIP-NWMGRLSQLRYLILANNNFEGEVPLR----------LCQLQKLRLLD  628 (892)
Q Consensus       574 ~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~----------~~~l~~L~~L~  628 (892)
                      ++|++|++++|+++.... ..+..+++|+.|++++|++....+..          +..+|+|+.||
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            888888888888874322 46778888888888888876544332          56788888876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.4e-10  Score=104.33  Aligned_cols=104  Identities=19%  Similarity=0.164  Sum_probs=47.1

Q ss_pred             cEEeecCccCcCCCCcccccCCCCcEEEccCCc-CCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCC
Q 044158          480 KRLNLDGNHFIGGIPESLSNCSSLQGLYISDND-ISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSK  558 (892)
Q Consensus       480 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  558 (892)
                      +.++.+++.+. ..|..+..+++|++|++++|+ ++...+..|.++++|+.|+|++|+++...+.+|..+++|++|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            34444444443 234444445555555554332 4433334444445555555555554444444455555555555555


Q ss_pred             CccCCCcccccccCCCCccEEEccCCcc
Q 044158          559 NNIAGRPLNGAFSKCSYLLTLDLCNNRL  586 (892)
Q Consensus       559 n~l~~~~~~~~~~~~~~L~~L~L~~n~l  586 (892)
                      |+++.++ +..|.. .+|+.|+|++|.+
T Consensus        90 N~l~~l~-~~~~~~-~~l~~L~L~~Np~  115 (156)
T d2ifga3          90 NALESLS-WKTVQG-LSLQELVLSGNPL  115 (156)
T ss_dssp             SCCSCCC-STTTCS-CCCCEEECCSSCC
T ss_pred             CCCcccC-hhhhcc-ccccccccCCCcc
Confidence            5554322 222222 2345555555544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=3.5e-08  Score=90.39  Aligned_cols=86  Identities=22%  Similarity=0.113  Sum_probs=58.5

Q ss_pred             ccccCCCCCcEEeCCCCccCCCc-ccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCc-----
Q 044158          543 SEFCQLDYLEILDLSKNNIAGRP-LNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPL-----  616 (892)
Q Consensus       543 ~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-----  616 (892)
                      ..+..+++|++|+|++|+++.+. ++..+..+++|+.|++++|+++...+-.......|+.|++++|++......     
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            33456777888888888887643 345567788888888888888754333334455788888888888754432     


Q ss_pred             --cccCCCCCCEEE
Q 044158          617 --RLCQLQKLRLLD  628 (892)
Q Consensus       617 --~~~~l~~L~~L~  628 (892)
                        .+..+|+|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence              245678888876

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.1e-07  Score=87.04  Aligned_cols=66  Identities=21%  Similarity=0.328  Sum_probs=30.6

Q ss_pred             cCCCCCCEEeCCCCCCCCccc-cccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCC
Q 044158          123 DSLSNLEGLDMSDNEIDNLVV-PKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFA  190 (892)
Q Consensus       123 ~~l~~L~~L~L~~n~i~~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~  190 (892)
                      ..+++|++|+|++|+|+.+.. ...+..+++|+.|++++|.++.....  ......+|++|++++|.+.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l--~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL--DKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGH--HHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhh--hhhhccccceeecCCCCcC
Confidence            445555556666655554421 22244455555555555555543111  1112234455555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.80  E-value=5.7e-06  Score=75.57  Aligned_cols=68  Identities=13%  Similarity=0.195  Sum_probs=33.1

Q ss_pred             CCCCCcEEeCCCC-ccCCccccccccccCCCCCCCEEeCCCCCCCCc----ccccccCCCCCCEEecCCcccc
Q 044158           47 PFQQLESLDLSGN-NIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNS----VLSSLAGLSSLKNLSLAYNRLE  114 (892)
Q Consensus        47 ~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~Ls~n~l~  114 (892)
                      +.++|++|+|+++ .+...........+...++|++|+|++|.+...    +...+...+.|++|+|++|.++
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            3456666666653 343221111223345556666666666665432    2223334455555555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.49  E-value=2.7e-05  Score=70.88  Aligned_cols=89  Identities=15%  Similarity=0.113  Sum_probs=45.4

Q ss_pred             ccCCCCCcEEeCCCCccCC---CcccccccCCCCccEEEccCCccCccC----ChhhhcCCCCCEEeccccccccc----
Q 044158          545 FCQLDYLEILDLSKNNIAG---RPLNGAFSKCSYLLTLDLCNNRLNGNI----PNWMGRLSQLRYLILANNNFEGE----  613 (892)
Q Consensus       545 ~~~l~~L~~L~Ls~n~l~~---~~~~~~~~~~~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~----  613 (892)
                      +...+.|++|+|++|.+..   ..+...+...+.|++|+|++|.++...    -..+...++|++|++++|.+...    
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            3344455555555555432   112233444556666666666655321    12334456666777766654321    


Q ss_pred             ---CCccccCCCCCCEEEcCCCc
Q 044158          614 ---VPLRLCQLQKLRLLDLSHNN  633 (892)
Q Consensus       614 ---~~~~~~~l~~L~~L~Ls~N~  633 (892)
                         +...+...++|+.|+++.+.
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHhCCCccEeeCcCCC
Confidence               23344456777777776553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.19  E-value=5.2e-05  Score=68.97  Aligned_cols=66  Identities=21%  Similarity=0.178  Sum_probs=28.5

Q ss_pred             CCCCcEEeCCC-CccCCccccccccccCCCCCCCEEeCCCCCCCCc----ccccccCCCCCCEEecCCccc
Q 044158           48 FQQLESLDLSG-NNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNS----VLSSLAGLSSLKNLSLAYNRL  113 (892)
Q Consensus        48 ~~~L~~L~Ls~-n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~Ls~n~l  113 (892)
                      .+.|++|+|++ +.++.........++...++|++|+|++|.++..    +...+...+.++.+++++|.+
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            45555555554 2333221111222334455555555555555432    112233444455555554443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.75  E-value=0.00042  Score=62.68  Aligned_cols=114  Identities=13%  Similarity=0.142  Sum_probs=62.7

Q ss_pred             CCCCCCCEEeCCC-CCCCCc----ccccccCCCCCCEEecCCcccccCCC---hhhhcCCCCCCEEeCCCCCCCCcccc-
Q 044158           74 SGLSNLKFLDLSH-NSFNNS----VLSSLAGLSSLKNLSLAYNRLEGSIN---IEELDSLSNLEGLDMSDNEIDNLVVP-  144 (892)
Q Consensus        74 ~~l~~L~~L~Ls~-n~i~~~----~~~~l~~l~~L~~L~Ls~n~l~~~i~---~~~l~~l~~L~~L~L~~n~i~~~~~~-  144 (892)
                      .+.+.|++|+|++ +.++..    +..++...++|++|++++|.+.....   ...+...+.++.+++++|.+...... 
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4668888888887 456543    33445677888888888887652211   12345567777777777776643321 


Q ss_pred             --ccccCCCCCcEEeCC--CCcCCCC--ccccccccCCCCCCEEECCCC
Q 044158          145 --KDYRGLRKLRFLDLS--GLRIRDG--SKVLHSIGSFPSLKTLYLKSN  187 (892)
Q Consensus       145 --~~~~~l~~L~~L~L~--~n~i~~~--~~~~~~l~~l~~L~~L~L~~n  187 (892)
                        ..+...+.|+.++|+  +|.+.+.  ..+...+...+.|++|+++.+
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence              234555666654443  3344321  112233344455555555433