Citrus Sinensis ID: 044191

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
KWFFPCNDFEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFPRALFSAFVDVLTLETKTIEQFGQGTEL
Secondary Structure (PSIPRED)
cccccccEEEEEcccHHHHHHHHHHcccccccccccEEEEEEEEccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHccccccccccEEEEEEEcccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
kwffpcndfevdyesneNASIVYAALAIdkelqpdkvkrqisviDGKLLVHFEAVEARFPRALFSAFVDVLTLETKTIEQFGQGTEL
Flexible Loop (DISEMBL)
KWFFPCNDFEVDYESNENASIVYAALAidkelqpdKVKRQISVIDGKLLVHFEAVEARFPRALFSAFVDVLTLETKTieqfgqgtel
Low Complexity Region (SEG)
KWFFPCNDFEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFPRALFSAFVDVLTLETKTIEQFGQGTEL
Disordered region (IsUnstruct)
*WFFPCNDFEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFPRALFSAFVDVLTLETKTIE********
Disordered Region (DISOPRED)
**FFPCNDFEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFPRALFSAFVDVLTLETKTIEQFG*****
Disordered Region (DISEMBL)
KWFFPCNDFEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFPRALFSAFVDVLTLETKTIE********
Disordered Region (DISPRO)
*WFFPCNDFEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFPRALFSAFVDVLTLETKTIEQFGQ****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
KWFFPCNDFEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFPRALFSAFVDVLTLETKTIEQFGQGTEL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
224132742	95	predicted protein [Populus trichocarpa]	0.954	0.873	0.785	2e-29
224120850	89	predicted protein [Populus trichocarpa]	0.954	0.932	0.785	8e-29
357436447	93	hypothetical protein MTR_1g007870 [Medic	0.988	0.924	0.747	3e-28
255561842	92	conserved hypothetical protein [Ricinus	0.988	0.934	0.724	3e-28
217069990	93	unknown [Medicago truncatula] gi|3884948	0.988	0.924	0.735	2e-27
225455350	110	PREDICTED: uncharacterized protein LOC10	0.977	0.772	0.744	2e-27
449456983	99	PREDICTED: uncharacterized protein LOC10	0.942	0.828	0.771	4e-27
357464009	95	hypothetical protein MTR_3g091850 [Medic	0.988	0.905	0.724	1e-26
449524252	154	PREDICTED: uncharacterized LOC101217139,	0.942	0.532	0.771	2e-26
356539188	91	PREDICTED: uncharacterized protein LOC10	0.988	0.945	0.724	3e-26

>gi|224132742|ref|XP_002321398.1| predicted protein [Populus trichocarpa] gi|222868394|gb|EEF05525.1| predicted protein [Populus trichocarpa]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/84 (78%), Positives = 73/84 (86%), Gaps = 1/84 (1%)

Query: 1  KWFFPCNDFEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFP 60
          +W F C DFEVD+ S ENASI+YAALA+DKELQPDKVKR +SV DGKL VHFEAVEARF 
Sbjct: 10 QWDFSC-DFEVDFGSEENASIIYAALAVDKELQPDKVKRLMSVSDGKLSVHFEAVEARFL 68

Query: 61 RALFSAFVDVLTLETKTIEQFGQG 84
          RA FSAFVDVLTL TKTIE+FG+G
Sbjct: 69 RASFSAFVDVLTLSTKTIEEFGKG 92

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120850|ref|XP_002318434.1| predicted protein [Populus trichocarpa] gi|222859107|gb|EEE96654.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (328), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 66/84 (78%), Positives = 73/84 (86%), Gaps = 1/84 (1%)

Query: 1  KWFFPCNDFEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFP 60
          +W F C DFEVD+ S ENASIVYAALA+DKELQPDKVKR +SV +GKL VHFEAVEARF 
Sbjct: 4  QWDFSC-DFEVDFGSEENASIVYAALAVDKELQPDKVKRLMSVSNGKLSVHFEAVEARFL 62

Query: 61 RALFSAFVDVLTLETKTIEQFGQG 84
          RA FSAFVDVLTL TKTIE+FG+G
Sbjct: 63 RASFSAFVDVLTLTTKTIEEFGKG 86

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436447|ref|XP_003588499.1| hypothetical protein MTR_1g007870 [Medicago truncatula] gi|217075576|gb|ACJ86148.1| unknown [Medicago truncatula] gi|355477547|gb|AES58750.1| hypothetical protein MTR_1g007870 [Medicago truncatula] gi|388518291|gb|AFK47207.1| unknown [Medicago truncatula]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/87 (74%), Positives = 74/87 (85%), Gaps = 1/87 (1%)

Query: 1  KWFFPCNDFEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFP 60
          +W F  +D EVD+ S ENASIVYAALA+DKELQP+KVKR ++V DGKL VHFEA+EARF 
Sbjct: 8  QWDF-TSDLEVDFGSQENASIVYAALAVDKELQPNKVKRIMAVSDGKLSVHFEAIEARFL 66

Query: 61 RALFSAFVDVLTLETKTIEQFGQGTEL 87
          RA FSAFVDVLTL TKTIE+FGQG EL
Sbjct: 67 RASFSAFVDVLTLATKTIEEFGQGMEL 93

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561842|ref|XP_002521930.1| conserved hypothetical protein [Ricinus communis] gi|223538855|gb|EEF40454.1| conserved hypothetical protein [Ricinus communis]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/87 (72%), Positives = 74/87 (85%), Gaps = 1/87 (1%)

Query: 1  KWFFPCNDFEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFP 60
          +W F C D EVD+ S+ENASIV++ALA+DKELQPDKVKR +S+ DGKL VHFEAVEARF 
Sbjct: 7  QWDFSC-DLEVDFGSDENASIVHSALAVDKELQPDKVKRHMSISDGKLSVHFEAVEARFL 65

Query: 61 RALFSAFVDVLTLETKTIEQFGQGTEL 87
          RA FSAF DVLTL TKTIE+FG+G +L
Sbjct: 66 RASFSAFTDVLTLATKTIEEFGKGAKL 92

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217069990|gb|ACJ83355.1| unknown [Medicago truncatula] gi|388494822|gb|AFK35477.1| unknown [Medicago truncatula]

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/87 (73%), Positives = 73/87 (83%), Gaps = 1/87 (1%)

Query: 1  KWFFPCNDFEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFP 60
          +W F  +D EV + S ENASIVYAALA+DKELQP+KVKR ++V DGKL VHFEA+EARF 
Sbjct: 8  QWDF-TSDLEVGFGSQENASIVYAALAVDKELQPNKVKRIMAVSDGKLSVHFEAIEARFL 66

Query: 61 RALFSAFVDVLTLETKTIEQFGQGTEL 87
          RA FSAFVDVLTL TKTIE+FGQG EL
Sbjct: 67 RASFSAFVDVLTLATKTIEEFGQGMEL 93

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455350|ref|XP_002277037.1| PREDICTED: uncharacterized protein LOC100250448 [Vitis vinifera] gi|302143916|emb|CBI23021.3| unnamed protein product [Vitis vinifera]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 1   KWFFPCNDFEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFP 60
           +W F C D EVDYES E ASIVY+AL +DKEL PDKVKRQ+SV DGKL VHFE VEARF 
Sbjct: 17  EWGFSC-DLEVDYESQEIASIVYSALDVDKELHPDKVKRQMSVSDGKLSVHFEGVEARFL 75

Query: 61  RALFSAFVDVLTLETKTIEQFGQGTE 86
           RA FSAFVDVLTL TKT E+FG+G E
Sbjct: 76  RASFSAFVDVLTLATKTAEEFGKGME 101

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456983|ref|XP_004146228.1| PREDICTED: uncharacterized protein LOC101217139 [Cucumis sativus]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 68/83 (81%), Gaps = 1/83 (1%)

Query: 1  KWFFPCNDFEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFP 60
          KW F C DFEVDYES + ASIVY AL +DKELQPDKVKR +S  DGKL +HFEAVEARF 
Sbjct: 14 KWEFSC-DFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKLSIHFEAVEARFL 72

Query: 61 RALFSAFVDVLTLETKTIEQFGQ 83
          RA FSAFVDVLTL TKTIE FGQ
Sbjct: 73 RASFSAFVDVLTLATKTIEDFGQ 95

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464009|ref|XP_003602286.1| hypothetical protein MTR_3g091850 [Medicago truncatula] gi|355491334|gb|AES72537.1| hypothetical protein MTR_3g091850 [Medicago truncatula]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/87 (72%), Positives = 69/87 (79%), Gaps = 1/87 (1%)

Query: 1  KWFFPCNDFEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFP 60
          +W F C D  VD+ S ENASIVYA L +DKELQPDKVKR  +V +GKL VHFEA EARF 
Sbjct: 10 QWDFSC-DLVVDFGSEENASIVYATLMVDKELQPDKVKRLTTVSNGKLSVHFEATEARFL 68

Query: 61 RALFSAFVDVLTLETKTIEQFGQGTEL 87
          RA FSAFVDVLTL TKTIE+FGQG EL
Sbjct: 69 RASFSAFVDVLTLATKTIEEFGQGMEL 95

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524252|ref|XP_004169137.1| PREDICTED: uncharacterized LOC101217139, partial [Cucumis sativus]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 68/83 (81%), Gaps = 1/83 (1%)

Query: 1   KWFFPCNDFEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFP 60
           KW F C DFEVDYES + ASIVY AL +DKELQPDKVKR +S  DGKL +HFEAVEARF 
Sbjct: 69  KWEFSC-DFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKLSIHFEAVEARFL 127

Query: 61  RALFSAFVDVLTLETKTIEQFGQ 83
           RA FSAFVDVLTL TKTIE FGQ
Sbjct: 128 RASFSAFVDVLTLATKTIEDFGQ 150

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539188|ref|XP_003538082.1| PREDICTED: uncharacterized protein LOC100811814 [Glycine max] gi|356563792|ref|XP_003550143.1| PREDICTED: uncharacterized protein LOC100527271 [Glycine max]

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/87 (72%), Positives = 71/87 (81%), Gaps = 1/87 (1%)

Query: 1  KWFFPCNDFEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFP 60
          +W F C D E+ + S ENASIVYAALA+DKELQPDKVKR ++V DGKL VHFEA EARF 
Sbjct: 6  QWEFSC-DMEMYFGSEENASIVYAALAVDKELQPDKVKRLMTVSDGKLSVHFEATEARFL 64

Query: 61 RALFSAFVDVLTLETKTIEQFGQGTEL 87
          RA FSAFVDVLTL TKTIE+FGQ  +L
Sbjct: 65 RASFSAFVDVLTLATKTIEEFGQVMKL 91

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
TAIR|locus:1005716822	96	AT5G53045 "AT5G53045" [Arabido	0.931	0.843	0.646	4.8e-23
UNIPROTKB|G4MRC8	101	MGG_04638 "Uncharacterized pro	0.873	0.752	0.279	0.00057

TAIR|locus:1005716822 AT5G53045 "AT5G53045" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 53/82 (64%), Positives = 65/82 (79%)

Query:     2 WFFPCNDFEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFPR 61
             W F CN  +V +ES E+A I Y +LA+DKELQPDKV+R +SV + KL VHFEA+EAR  R
Sbjct:    15 WDFSCN-LDVSFESEEHALIAYTSLAVDKELQPDKVRRVMSVSNNKLSVHFEAIEARLLR 73

Query:    62 ALFSAFVDVLTLETKTIEQFGQ 83
             A FSAFVDVLTL T+TI++FGQ
Sbjct:    74 ASFSAFVDVLTLATRTIQEFGQ 95

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4MRC8 MGG_04638 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 24/86 (27%), Positives = 41/86 (47%)

Query:     4 FPCN-DFEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGK--------LLVHFEA 54
             FPC    +V + +   A +   +L++DKEL P  V+R+ S +           L   + A
Sbjct:     4 FPCTLTIDVPFPTARLAKVALGSLSVDKELSPS-VQREFSTVSASSGATEETILRTEYSA 62

Query:    55 VEARFPRALFSAFVDVLTLETKTIEQ 80
                R  R   ++F+D L+L  + +EQ
Sbjct:    63 TTNRMLRVAVNSFMDSLSLVIEVMEQ 88


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       87        87   0.00091  102 3  11 22  0.44    29
                                                     29  0.48    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  522 (56 KB)
  Total size of DFA:  98 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.34u 0.12s 9.46t   Elapsed:  00:00:00
  Total cpu time:  9.34u 0.12s 9.46t   Elapsed:  00:00:00
  Start:  Sat May 11 11:56:58 2013   End:  Sat May 11 11:56:58 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	87
pfam09341	72	pfam09341, Pcc1, Transcription factor Pcc1	1e-12

>gnl|CDD|220188 pfam09341, Pcc1, Transcription factor Pcc1

 Score = 56.8 bits (138), Expect = 1e-12
 Identities = 23/71 (32%), Positives = 41/71 (57%)

Query: 10 EVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFPRALFSAFVD 69
          E+ + +   A I Y +L  + EL P +VK ++S+ D  L+V   A + R  RA  ++F+ 
Sbjct: 2  EIPFPTPREAEIAYRSLLPEPELPPSRVKVELSLDDNSLVVRITAEDLRALRASVNSFLR 61

Query: 70 VLTLETKTIEQ 80
          +L L  +T+E+
Sbjct: 62 LLKLALETMEE 72

Pcc1 is a transcription factor that functions in regulating genes involved in cell cycle progression and polarised growth. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
PF09341	76	Pcc1: Transcription factor Pcc1; InterPro: IPR0154	99.95
PRK14887	84	KEOPS complex Pcc1-like subunit; Provisional	99.91
COG2892	82	Uncharacterized protein conserved in archaea [Func	99.61
PRK14888	59	KEOPS complex Pcc1-like subunit; Provisional	97.4

>PF09341 Pcc1: Transcription factor Pcc1; InterPro: IPR015419 Pcc1 is a proposed transcription factor involved in the expression of genes regulated by alpha-factor and galactose; component of the EKC/KEOPS protein complex with Kae1, Gon7, Bud32, and Cgi121; related to human cancer-testis antigens []

Probab=99.95  E-value=1.3e-27  Score=148.49  Aligned_cols=75  Identities=43%  Similarity=0.667  Sum_probs=68.2

Q ss_pred             ceeEEEEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEEeccCchHHHHHHHHHHHHHHHHHHHHh
Q 044191            5 PCNDFEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFPRALFSAFVDVLTLETKTIEQ   80 (87)
Q Consensus         5 ~~~~L~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~a~d~r~LRvsvnsfld~l~Lv~~tm~~   80 (87)
                      .+ +++|||+|+++|++|+++|+||++++|+.++++++++|+.|.|+|+|.|.|+||+|+|||||+|+|+++||+|
T Consensus         2 ~~-~l~i~f~s~~~A~ii~~sL~~d~e~~~~~~~~~~~~~~~~L~i~~~A~d~~~LRasvns~l~~l~l~~~~i~e   76 (76)
T PF09341_consen    2 SF-TLEIPFESEEKAEIIYRSLKPDKELKPSRVKRELSVDGNKLVITIEAEDLRSLRASVNSFLDLLKLAEETIEE   76 (76)
T ss_dssp             -E-EEEEE-SSHHHHHHHHHHHHHHHH-SS-SSEEEEEEESSEEEEEEEESSHHHHHHHHHHHHHHHHHHCHHH--
T ss_pred             EE-EEEEEeCCHHHHHHHHHHhCCCCCCCCCcEEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            45 9999999999999999999999999999999999999999999999999999999999999999999999986

; PDB: 2BNR_C 2P5W_C 3KLA_C 2F54_C 2P5E_C 2F53_C 3ENO_E 3ENC_B.

>PRK14887 KEOPS complex Pcc1-like subunit; Provisional

Probab=99.91  E-value=4.2e-24  Score=136.71  Aligned_cols=78  Identities=17%  Similarity=0.357  Sum_probs=75.3

Q ss_pred             CccceeEEEEeCCChhHHHHHHhhcccCcccCc-cceEEEEEEECCEEEEEEEeccCchHHHHHHHHHHHHHHHHHHHHh
Q 044191            2 WFFPCNDFEVDYESNENASIVYAALAIDKELQP-DKVKRQISVIDGKLLVHFEAVEARFPRALFSAFVDVLTLETKTIEQ   80 (87)
Q Consensus         2 ~~~~~~~L~VpF~s~~~A~ia~~sL~vD~e~~p-~~v~r~l~v~g~~L~v~~~a~d~r~LRvsvnsfld~l~Lv~~tm~~   80 (87)
                      +++.+ .+++||+|+++|+++|+||.||++.+| ++++.+++++|+.|.|+|+|.|.+.||+|+|||++|++++.++++-
T Consensus         2 ~~~~~-~lei~f~s~~~A~iiy~sl~~E~~~~~~~rs~~~~~~~~~~l~i~i~A~D~~~LRAslNs~lr~i~va~e~~~~   80 (84)
T PRK14887          2 RMHKF-TLEFEFETEERARIIYRSVLPEHGDSQGERSKADLSLDGNTIVITIEAEDLSALRASLNSWLRLIKVAEEVLEL   80 (84)
T ss_pred             CCceE-EEEEEECCHHHHHHHHHHhCcCcccCCcCceEEEEEEeCCEEEEEEEECcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888 999999999999999999999999999 7899999999999999999999999999999999999999999874

>COG2892 Uncharacterized protein conserved in archaea [Function unknown]

Probab=99.61  E-value=5.3e-15  Score=94.31  Aligned_cols=74  Identities=14%  Similarity=0.336  Sum_probs=67.8

Q ss_pred             EEEEeCCChhHHHHHHhhcccCcccCc-cceEEEEEEECCEEEEEEEeccCchHHHHHHHHHHHHHHHHHHHHhh
Q 044191            8 DFEVDYESNENASIVYAALAIDKELQP-DKVKRQISVIDGKLLVHFEAVEARFPRALFSAFVDVLTLETKTIEQF   81 (87)
Q Consensus         8 ~L~VpF~s~~~A~ia~~sL~vD~e~~p-~~v~r~l~v~g~~L~v~~~a~d~r~LRvsvnsfld~l~Lv~~tm~~f   81 (87)
                      .+.+.|+|++.|+++|+++.||+-..| .+.+..+..+|+.+.+++.|.|...||+++||||+|++++++.++--
T Consensus         5 ~~viE~~see~AevIY~sv~~E~~~~~~~rSrv~l~~~~~rI~l~I~A~D~s~lRaa~nS~lRlI~~a~~vi~i~   79 (82)
T COG2892           5 EIVIEFPSEEVAEVIYRSVLPEHVEVPSRRSRVKLERDGNRIVLEIRAEDSSALRAAINSYLRLIKVAQEVIEIS   79 (82)
T ss_pred             EEEEEcCcHHHHHHHHHHhhHHHhccccccceeEEEecCCEEEEEEEecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999999999996665 56788999999999999999999999999999999999999998743

>PRK14888 KEOPS complex Pcc1-like subunit; Provisional

Probab=97.40  E-value=0.00092  Score=40.16  Aligned_cols=55  Identities=16%  Similarity=0.094  Sum_probs=48.1

Q ss_pred             HhhcccCcccCccceEEEEEEECCEEEEEEEeccCchHHHHHHHHHHHHHHHHHHHHhhC
Q 044191           23 YAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFPRALFSAFVDVLTLETKTIEQFG   82 (87)
Q Consensus        23 ~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~a~d~r~LRvsvnsfld~l~Lv~~tm~~f~   82 (87)
                      +++|.||-.-     ..+-.++|+.+..++++.+.+.|+.++--|+.+++++-++++.-.
T Consensus         2 ~~AL~pDN~~-----~~~t~~~~~~v~~~i~~~~igsl~~TvDD~l~nl~vae~v~~~~~   56 (59)
T PRK14888          2 AKALEPDNLD-----IMETEVDGDTVVYTIESEKIGTLLNTVDDYLMNLKVAEKVIEALS   56 (59)
T ss_pred             ccccCCCCcc-----cEEEEEcCCEEEEEEEeCcHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5678888764     466678899999999999999999999999999999999998754

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	87
3enc_A	87	Protein PCC1; dimerization domain, keops, telomere	99.77

>3enc_A Protein PCC1; dimerization domain, keops, telomere, unknown function; 2.63A {Pyrococcus furiosus} PDB: 3eno_C

Probab=99.77  E-value=2.1e-19  Score=114.94  Aligned_cols=77  Identities=16%  Similarity=0.300  Sum_probs=72.2

Q ss_pred             CccceeEEEEeCCChhHHHHHHhhcccCcccCc-cceEEEEEEECCEEEEEEEeccCchHHHHHHHHHHHHHHHHHHHH
Q 044191            2 WFFPCNDFEVDYESNENASIVYAALAIDKELQP-DKVKRQISVIDGKLLVHFEAVEARFPRALFSAFVDVLTLETKTIE   79 (87)
Q Consensus         2 ~~~~~~~L~VpF~s~~~A~ia~~sL~vD~e~~p-~~v~r~l~v~g~~L~v~~~a~d~r~LRvsvnsfld~l~Lv~~tm~   79 (87)
                      |++.+ .|+++|++++.|+++|+||.||++..| .+.+.++.++|+.|.|+++|.|.+.||+++|+|++|++++.++++
T Consensus         9 ~~i~a-~l~~e~~~~e~A~iVy~Sl~~E~~~~~~~RS~~~i~l~~~~l~i~i~A~D~~aLRA~lNs~lRlI~vA~~~~e   86 (87)
T 3enc_A            9 KRVQA-KIEMEFPSEDVAKVVYEAVLYEHLSVPYRRSEIDFKLEGKKIILDIKATDSSALRGTVNSYLRWIKAAIDVIE   86 (87)
T ss_dssp             CCEEE-EEEEECSCHHHHHHHHHHHTHHHHTCCSCSSEECCEESSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred             cceEE-EEEEEeCCHHHHHHHHHHhCcccccCCCCCceEEEEEeCCEEEEEEEEChHHHHHHHHHHHHHHHHHHHHHhh
Confidence            78899 999999999999999999999988888 678999999999999999999999999999999999999988754

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00