Citrus Sinensis ID: 044269

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MLTSSTILDGTDQVNLNQVADLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHDSANNPGPSKAKKGFEDSIKWPQWK
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHccccccccEEEEEEccccEEEEEccHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHcccccccEEEEccEEEEEEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHcccccccHHHHHHHHHHHcccccccEEEEEcccccEEEEEcHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHcccccccEEEEEEEEEEEEcccccccccHccccccccccccccc
Coil and Loop (DISEMBL)
mltsstildgtdqvNLNQVADLVNKqrsasindfeifhdsgsntWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEmvwhdsannpgpskakkgfedsikwpqwk
Flexible Loop (DISEMBL)
mltsstildgtdqvNLNQVADLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHDSannpgpskakkgfedsikwpqwk
Low Complexity Region (SEG)
MLTSSTILDGTDQVNLNQVADLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHDSANNPGPSKAKKGFEDSIKWPQWK
Disordered region (IsUnstruct)
**************NLNQVADLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWH*************************
Disordered Region (DISOPRED)
*LTSSTILDGTDQVNLNQVADLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHD************************
Disordered Region (DISEMBL)
MLTSSTILDGTDQVNLNQVADLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHDSANN********************
Disordered Region (DISPRO)
MLTSSTILDGTDQVNLNQVADLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHDS***********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLTSSTILDGTDQVNLNQVADLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHDSANNPGPSKAKKGFEDSIKWPQWK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
B8GA36	439	GTPase obg OS=Chloroflexu	yes	no	0.519	0.152	0.358	3e-07
Q1JLA1	437	GTPase obg OS=Streptococc	yes	no	0.782	0.231	0.330	7e-07
Q1JBB7	437	GTPase obg OS=Streptococc	yes	no	0.782	0.231	0.330	7e-07
A2RE30	437	GTPase obg OS=Streptococc	yes	no	0.782	0.231	0.330	7e-07
Q1J652	437	GTPase obg OS=Streptococc	yes	no	0.782	0.231	0.330	8e-07
Q5XBM1	437	GTPase obg OS=Streptococc	N/A	no	0.782	0.231	0.330	8e-07
A5UZ80	439	GTPase obg OS=Roseiflexus	yes	no	0.496	0.145	0.359	1e-06
Q1JGD5	437	GTPase obg OS=Streptococc	yes	no	0.782	0.231	0.320	2e-06
B5XLZ0	437	GTPase obg OS=Streptococc	yes	no	0.782	0.231	0.320	2e-06
Q99Z94	437	GTPase obg OS=Streptococc	N/A	no	0.782	0.231	0.320	2e-06

>sp|B8GA36|OBG_CHLAD GTPase obg OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=obg PE=3 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query: 43  NTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMV 102
           + + V G  ++R + M+N    ++  R Q  LEA G+ ++LM  GV++GD V +G  E+V
Sbjct: 371 DAFRVRGVKIERLIAMSNLEQDEAIDRIQRVLEASGINEALMAAGVQDGDVVRIGRAELV 430

Query: 103 WHDSANN 109
           W DS  +
Sbjct: 431 WDDSGQH 437

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.
Chloroflexus aggregans (strain MD-66 / DSM 9485) (taxid: 326427)

>sp|Q1JLA1|OBG_STRPC GTPase obg OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=obg PE=3 SV=1

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 5/106 (4%)

Query: 4   SSTILDGTDQVNLNQVADLVNKQR----SASINDFEIFHDSGSNTWNVVGAGLQRFVQMT 59
           ++ +L  TD+  L   ADLV+++     + +  DFEI  D  + TW + G  L+R   MT
Sbjct: 333 TAELLAKTDEFLLYDEADLVDEEAYYGFAETEKDFEITRDDDA-TWVLSGEKLERLFVMT 391

Query: 60  NWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHD 105
           N    +S  +F   L   GV ++L + G K+GD V +G  E  + D
Sbjct: 392 NMERDESIMKFARQLRGMGVDEALRERGAKDGDPVRIGKFEFEFVD 437

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Streptococcus pyogenes serotype M12 (strain MGAS9429) (taxid: 370551)

>sp|Q1JBB7|OBG_STRPB GTPase obg OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=obg PE=3 SV=1

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 5/106 (4%)

Query: 4   SSTILDGTDQVNLNQVADLVNKQR----SASINDFEIFHDSGSNTWNVVGAGLQRFVQMT 59
           ++ +L  TD+  L   ADLV+++     + +  DFEI  D  + TW + G  L+R   MT
Sbjct: 333 TAELLAKTDEFLLYDEADLVDEEAYYGFAETEKDFEITRDDDA-TWVLSGEKLERLFVMT 391

Query: 60  NWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHD 105
           N    +S  +F   L   GV ++L + G K+GD V +G  E  + D
Sbjct: 392 NMERDESIMKFARQLRGMGVDEALRERGAKDGDPVRIGKFEFEFVD 437

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Streptococcus pyogenes serotype M12 (strain MGAS2096) (taxid: 370553)

>sp|A2RE30|OBG_STRPG GTPase obg OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=obg PE=3 SV=1

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 5/106 (4%)

Query: 4   SSTILDGTDQVNLNQVADLVNKQR----SASINDFEIFHDSGSNTWNVVGAGLQRFVQMT 59
           ++ +L  TD+  L   ADLV+++     + +  DFEI  D  + TW + G  L+R   MT
Sbjct: 333 TAELLAKTDEFLLYDEADLVDEEAYYGFAETEKDFEITRDDDA-TWVLSGEKLERLFVMT 391

Query: 60  NWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHD 105
           N    +S  +F   L   GV ++L + G K+GD V +G  E  + D
Sbjct: 392 NMERDESIMKFARQLRGMGVDEALRERGAKDGDPVRIGKFEFEFVD 437

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Streptococcus pyogenes serotype M5 (strain Manfredo) (taxid: 160491)

>sp|Q1J652|OBG_STRPF GTPase obg OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=obg PE=3 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 5/106 (4%)

Query: 4   SSTILDGTDQVNLNQVADLVNKQR----SASINDFEIFHDSGSNTWNVVGAGLQRFVQMT 59
           ++ +L  TD+  L   ADLV+++     + +  DFEI  D  + TW + G  L+R   MT
Sbjct: 333 TAELLAKTDEFLLYDEADLVDEEAYYGFAETEKDFEITRDDDA-TWVLSGEKLERLFVMT 391

Query: 60  NWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHD 105
           N    +S  +F   L   GV ++L + G K+GD V +G  E  + D
Sbjct: 392 NMERDESIMKFARQLRGMGVDEALRERGAKDGDLVRIGKFEFEFVD 437

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Streptococcus pyogenes serotype M4 (strain MGAS10750) (taxid: 370554)

>sp|Q5XBM1|OBG_STRP6 GTPase obg OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=obg PE=3 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 5/106 (4%)

Query: 4   SSTILDGTDQVNLNQVADLVNKQR----SASINDFEIFHDSGSNTWNVVGAGLQRFVQMT 59
           ++ +L  TD+  L   ADLV+++     + +  DFEI  D  + TW + G  L+R   MT
Sbjct: 333 TAELLAKTDEFLLYDEADLVDEEAYYGFAETEKDFEITRDDDA-TWVLSGEKLERLFVMT 391

Query: 60  NWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHD 105
           N    +S  +F   L   GV ++L + G K+GD V +G  E  + D
Sbjct: 392 NMERDESIMKFARQLRGMGVDEALRERGAKDGDLVRIGKFEFEFVD 437

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Streptococcus pyogenes serotype M6 (taxid: 301450)

>sp|A5UZ80|OBG_ROSS1 GTPase obg OS=Roseiflexus sp. (strain RS-1) GN=obg PE=3 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 42  SNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEM 101
           S+ W V G  ++R + MTN+   D+  R Q  LEA G++ +L + G++ GDTV +     
Sbjct: 365 SDGWRVRGRKIERLISMTNFAQPDAIMRIQRVLEASGISAALQEAGIQNGDTVYIEKAAF 424

Query: 102 VWHD 105
            W D
Sbjct: 425 EWED 428

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Roseiflexus sp. (strain RS-1) (taxid: 357808)

>sp|Q1JGD5|OBG_STRPD GTPase obg OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=obg PE=3 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 5/106 (4%)

Query: 4   SSTILDGTDQVNLNQVADLVNKQR----SASINDFEIFHDSGSNTWNVVGAGLQRFVQMT 59
           ++ +L  TD+  L   +DLV+++     + +  DFEI  D  + TW + G  L+R   MT
Sbjct: 333 TAELLAKTDEFLLYDESDLVDEEAYYGFAKTEKDFEITRDDDA-TWVLSGEKLERLFVMT 391

Query: 60  NWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHD 105
           N    +S  +F   L   GV ++L + G K+GD V +G  E  + D
Sbjct: 392 NMERDESIMKFARQLRGMGVDEALRERGAKDGDPVRIGKFEFEFVD 437

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Streptococcus pyogenes serotype M2 (strain MGAS10270) (taxid: 370552)

>sp|B5XLZ0|OBG_STRPZ GTPase obg OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=obg PE=3 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 5/106 (4%)

Query: 4   SSTILDGTDQVNLNQVADLVNKQR----SASINDFEIFHDSGSNTWNVVGAGLQRFVQMT 59
           ++ +L  TD+  L   ADLV+++     + +  +FEI  D  + TW + G  L+R   MT
Sbjct: 333 TAELLAKTDEFLLYDEADLVDEEAYYGFAETEKNFEIIRDDDA-TWVLSGEKLERLFVMT 391

Query: 60  NWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHD 105
           N    +S  +F   L   GV ++L + G K+GD V +G  E  + D
Sbjct: 392 NMERDESIMKFARQLRGMGVDEALRERGAKDGDLVRIGKFEFEFVD 437

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Streptococcus pyogenes serotype M49 (strain NZ131) (taxid: 471876)

>sp|Q99Z94|OBG_STRP1 GTPase obg OS=Streptococcus pyogenes serotype M1 GN=obg PE=3 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 5/106 (4%)

Query: 4   SSTILDGTDQVNLNQVADLVNKQR----SASINDFEIFHDSGSNTWNVVGAGLQRFVQMT 59
           ++ +L  TD+  L   +DLV+++     + +  DFEI  D  + TW + G  L+R   MT
Sbjct: 333 TAELLAKTDEFLLYDESDLVDEEAYYGFAETEKDFEITRDDDA-TWVLSGEKLERLFVMT 391

Query: 60  NWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHD 105
           N    +S  +F   L   GV ++L + G K+GD V +G  E  + D
Sbjct: 392 NMERDESIMKFARQLRGMGVDEALRERGAKDGDPVRIGKFEFEFVD 437

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Streptococcus pyogenes serotype M1 (taxid: 301447)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
225432348	636	PREDICTED: GTPase obg-like [Vitis vinife	0.922	0.187	0.773	5e-51
297736891	397	unnamed protein product [Vitis vinifera]	0.922	0.299	0.773	1e-50
147810795	657	hypothetical protein VITISV_022942 [Viti	0.914	0.179	0.771	1e-50
356549083	595	PREDICTED: GTPase obg-like isoform 1 [Gl	0.937	0.203	0.760	3e-49
347984202	492	GTP-binding protein DLObg1-2 [Dimocarpus	0.906	0.237	0.796	3e-48
357447369	617	GTPase obg [Medicago truncatula] gi|3554	0.930	0.194	0.710	3e-44
255551689	637	Spo0B-associated GTP-binding protein, pu	0.875	0.177	0.747	3e-44
449433377	661	PREDICTED: GTPase obg-like [Cucumis sati	0.868	0.169	0.704	2e-42
356557827	564	PREDICTED: LOW QUALITY PROTEIN: GTPase o	0.899	0.205	0.698	6e-41
297812041	681	GTP1/OBG family protein [Arabidopsis lyr	0.891	0.168	0.655	6e-41

>gi|225432348|ref|XP_002276482.1| PREDICTED: GTPase obg-like [Vitis vinifera]

 Score =  205 bits (521), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 108/119 (90%)

Query: 11  TDQVNLNQVADLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRF 70
           TD VNLN VAD+++KQRSASIN+FEIFH+ GSNTW+VVG+GLQRFVQMTNWRY++S+RRF
Sbjct: 518 TDPVNLNHVADMLHKQRSASINEFEIFHEKGSNTWHVVGSGLQRFVQMTNWRYIESDRRF 577

Query: 71  QHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHDSANNPGPSKAKKGFEDSIKWPQWK 129
           QH LEACGV KSL+KLGVKEGDTVIVG+MEMVWHDSA++ GPS  +K   DS+KWPQWK
Sbjct: 578 QHVLEACGVNKSLIKLGVKEGDTVIVGEMEMVWHDSADSSGPSNVRKESTDSVKWPQWK 636

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736891|emb|CBI26092.3| unnamed protein product [Vitis vinifera]

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 108/119 (90%)

Query: 11  TDQVNLNQVADLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRF 70
           TD VNLN VAD+++KQRSASIN+FEIFH+ GSNTW+VVG+GLQRFVQMTNWRY++S+RRF
Sbjct: 279 TDPVNLNHVADMLHKQRSASINEFEIFHEKGSNTWHVVGSGLQRFVQMTNWRYIESDRRF 338

Query: 71  QHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHDSANNPGPSKAKKGFEDSIKWPQWK 129
           QH LEACGV KSL+KLGVKEGDTVIVG+MEMVWHDSA++ GPS  +K   DS+KWPQWK
Sbjct: 339 QHVLEACGVNKSLIKLGVKEGDTVIVGEMEMVWHDSADSSGPSNVRKESTDSVKWPQWK 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810795|emb|CAN76164.1| hypothetical protein VITISV_022942 [Vitis vinifera]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/118 (77%), Positives = 107/118 (90%)

Query: 12  DQVNLNQVADLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQ 71
           D VNLN VAD+++KQRSASIN+FEIFH+ GSNTW+VVG+GLQRFVQMTNWRY++S+RRFQ
Sbjct: 540 DPVNLNHVADMLHKQRSASINEFEIFHEKGSNTWHVVGSGLQRFVQMTNWRYIESDRRFQ 599

Query: 72  HGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHDSANNPGPSKAKKGFEDSIKWPQWK 129
           H LEACGV KSL+KLGVKEGDTVIVG+MEMVWHDSA++ GPS  +K   DS+KWPQWK
Sbjct: 600 HVLEACGVNKSLIKLGVKEGDTVIVGEMEMVWHDSADSSGPSNVRKESTDSVKWPQWK 657

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549083|ref|XP_003542927.1| PREDICTED: GTPase obg-like isoform 1 [Glycine max]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 92/121 (76%), Positives = 104/121 (85%)

Query: 9   DGTDQVNLNQVADLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSER 68
           DG D VNLN VA  V KQRSASI+DFEIFHDS SN W+VVG+GLQRF+QMTNWRY+DSER
Sbjct: 475 DGRDMVNLNHVAAAVKKQRSASISDFEIFHDSDSNIWHVVGSGLQRFIQMTNWRYIDSER 534

Query: 69  RFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHDSANNPGPSKAKKGFEDSIKWPQW 128
           RFQH LEACGV KSLMKLGVKEGDTVIVG+M+M+WHDS++NPG S+ KK   DS KW +W
Sbjct: 535 RFQHVLEACGVYKSLMKLGVKEGDTVIVGEMKMIWHDSSDNPGASRMKKISTDSFKWAEW 594

Query: 129 K 129
           K
Sbjct: 595 K 595

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|347984202|gb|AEP40120.1| GTP-binding protein DLObg1-2 [Dimocarpus longan] gi|347984204|gb|AEP40121.1| GTP-binding protein DLObg1-3 [Dimocarpus longan]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 94/118 (79%), Positives = 101/118 (85%), Gaps = 1/118 (0%)

Query: 12  DQVNLNQVADLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQ 71
           D VNLN VAD+V KQRS SIN+FEI  D  SNTW+VVG+GLQRFVQMTNWRY+DSE+RFQ
Sbjct: 376 DPVNLNHVADMVAKQRSTSINEFEISRDGSSNTWHVVGSGLQRFVQMTNWRYIDSEKRFQ 435

Query: 72  HGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHDSANNPGPSKAKKGFEDSIKWPQWK 129
           H LEACGV KSLMKLGVKEGDTVIVG+MEMVWHDS  N  PSK KK  EDSIKWPQWK
Sbjct: 436 HVLEACGVYKSLMKLGVKEGDTVIVGEMEMVWHDSTEN-SPSKVKKEPEDSIKWPQWK 492

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447369|ref|XP_003593960.1| GTPase obg [Medicago truncatula] gi|355483008|gb|AES64211.1| GTPase obg [Medicago truncatula]

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 100/121 (82%), Gaps = 1/121 (0%)

Query: 9   DGTDQVNLNQVADLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSER 68
           DG D V++N +A  V KQRSASI+DFEIFHDS SN W+VVG+GL RFVQMTNWRY+DSE+
Sbjct: 498 DGRDMVDMNHIAHAVQKQRSASISDFEIFHDSSSNVWSVVGSGLHRFVQMTNWRYVDSEK 557

Query: 69  RFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHDSANNPGPSKAKKGFEDSIKWPQW 128
           RFQ+ LEACGV KSL+K GVKEGD VIVG+MEM+WHDS+N  G SK K    DSIKWP+W
Sbjct: 558 RFQNVLEACGVFKSLVKRGVKEGDKVIVGEMEMIWHDSSNKAGASKMKMS-TDSIKWPEW 616

Query: 129 K 129
           K
Sbjct: 617 K 617

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551689|ref|XP_002516890.1| Spo0B-associated GTP-binding protein, putative [Ricinus communis] gi|223543978|gb|EEF45504.1| Spo0B-associated GTP-binding protein, putative [Ricinus communis]

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/115 (74%), Positives = 96/115 (83%), Gaps = 2/115 (1%)

Query: 12  DQVNLNQVADLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQ 71
           D  NLN VAD+V KQR + INDFEIFH+SGSNTW V+G+GLQRFVQMTNWRY DSERRFQ
Sbjct: 522 DPANLNHVADMVQKQRRSPINDFEIFHESGSNTWQVIGSGLQRFVQMTNWRYADSERRFQ 581

Query: 72  HGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHDSANNPGPSKAKKGFEDSIKWP 126
           H LEACGV K+L K+GVKEGDTVIVG+MEMVWHDS  +P PS  K+ FE S KWP
Sbjct: 582 HVLEACGVYKTLKKMGVKEGDTVIVGEMEMVWHDS-ESPDPSNLKRRFE-SAKWP 634

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433377|ref|XP_004134474.1| PREDICTED: GTPase obg-like [Cucumis sativus]

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/115 (70%), Positives = 97/115 (84%), Gaps = 3/115 (2%)

Query: 15  NLNQVADLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGL 74
           NL+ VAD ++KQRSASI+D+EI +DSGS  W+VVG+GLQRFVQMTNWRY +SERRFQH +
Sbjct: 550 NLDHVADRIHKQRSASIDDYEIINDSGS--WHVVGSGLQRFVQMTNWRYTESERRFQHVM 607

Query: 75  EACGVTKSLMKLGVKEGDTVIVGDMEMVWHDSANNPGPSKAKKGFEDSIKWPQWK 129
           EACGV KSL KLGVKEGDTV + +MEM+WHDS N+ GPS  KK   DS+KWP+WK
Sbjct: 608 EACGVNKSLRKLGVKEGDTVFIAEMEMIWHDSPNSSGPSNMKKR-SDSVKWPEWK 661

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557827|ref|XP_003547212.1| PREDICTED: LOW QUALITY PROTEIN: GTPase obg-like [Glycine max]

 Score =  172 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 81/116 (69%), Positives = 93/116 (80%)

Query: 14  VNLNQVADLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHG 73
           VNLN VA  V K R+ASI+DFEI HDS SN W+VVG+GL RF+QM NWRY+D ERRFQ  
Sbjct: 449 VNLNHVAVAVKKLRNASISDFEICHDSDSNIWHVVGSGLXRFIQMMNWRYIDLERRFQRV 508

Query: 74  LEACGVTKSLMKLGVKEGDTVIVGDMEMVWHDSANNPGPSKAKKGFEDSIKWPQWK 129
           LEACGV KSLMKLGVKEGDTVIVG+M+ VWHDS++N G S+ KK   DS KW +WK
Sbjct: 509 LEACGVYKSLMKLGVKEGDTVIVGEMKKVWHDSSDNSGVSRMKKMSTDSFKWAEWK 564

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812041|ref|XP_002873904.1| GTP1/OBG family protein [Arabidopsis lyrata subsp. lyrata] gi|297319741|gb|EFH50163.1| GTP1/OBG family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  172 bits (435), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 97/116 (83%), Gaps = 1/116 (0%)

Query: 15  NLNQVADLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGL 74
           NL+ VA+ ++K+R A+IN+FEIF DSG+  W+VVGAGLQRFVQMTNWRY+DS++RFQH L
Sbjct: 566 NLDHVAEKIDKERRAAINEFEIFRDSGTRAWHVVGAGLQRFVQMTNWRYMDSDKRFQHVL 625

Query: 75  EACGVTKSLMKLGVKEGDTVIVGDMEMVWHDSANNPG-PSKAKKGFEDSIKWPQWK 129
           +ACGV KSL  +GVKEGDTVIVG+ME++WHDSAN    P+ + K   DS++WPQWK
Sbjct: 626 DACGVNKSLKNMGVKEGDTVIVGEMELIWHDSANGSSRPTDSNKTSTDSVRWPQWK 681

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
TAIR|locus:2182998	681	EMB269 "EMBRYO DEFECTIVE 269"	0.891	0.168	0.646	3.5e-40
UNIPROTKB|Q71ZD3	429	obg "GTPase obg" [Listeria mon	0.806	0.242	0.327	1.8e-05

TAIR|locus:2182998 EMB269 "EMBRYO DEFECTIVE 269" [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 3.5e-40, P = 3.5e-40
 Identities = 75/116 (64%), Positives = 96/116 (82%)

Query:    15 NLNQVADLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGL 74
             NL+ VA  ++K+R A+IN+FE+F DSG+  W+VVGAGLQRFVQMTNWRY+DS++RFQH L
Sbjct:   566 NLDHVAKKIDKERRAAINEFEVFRDSGTRAWHVVGAGLQRFVQMTNWRYMDSDKRFQHVL 625

Query:    75 EACGVTKSLMKLGVKEGDTVIVGDMEMVWHDSANNPG-PSKAKKGFEDSIKWPQWK 129
             +ACGV KSL  +GVKEGDTVIVG+ME++WHDSAN    P+ + K   DS++WPQWK
Sbjct:   626 DACGVNKSLKNMGVKEGDTVIVGEMELIWHDSANGSSRPTDSNKTSTDSVRWPQWK 681

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009507 "chloroplast" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0006364 "rRNA processing" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0016556 "mRNA modification" evidence=RCA

UNIPROTKB|Q71ZD3 obg "GTPase obg" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 109 (43.4 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 36/110 (32%), Positives = 54/110 (49%)

Query:     1 MLTSSTILDGTDQVNLNQVA-----DLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRF 55
             +L  +  L+ T +  LN++      D V  +  A   DFEI  +    T+ + GA ++R 
Sbjct:   321 LLAIADKLETTPEFPLNEILEQEDEDTVLYKYVAEEPDFEISREP-DGTFVLSGAKIERL 379

Query:    56 VQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHD 105
               MTN+    S  RF   L A GV ++L K G K+GD V + D E  + D
Sbjct:   380 FTMTNFERDASISRFARQLRAMGVDEALRKRGAKDGDIVRLLDYEFEFMD 429


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      129       129   0.00091  102 3  11 22  0.43    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  149 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.33u 0.12s 12.45t   Elapsed:  00:00:01
  Total cpu time:  12.33u 0.12s 12.45t   Elapsed:  00:00:01
  Start:  Sat May 11 16:21:39 2013   End:  Sat May 11 16:21:40 2013

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	129
pfam09269	69	pfam09269, DUF1967, Domain of unknown function (DU	1e-21
PRK12297	424	PRK12297, obgE, GTPase CgtA; Reviewed	5e-14
TIGR03595	69	TIGR03595, Obg_CgtA_exten, Obg family GTPase CgtA,	2e-13

>gnl|CDD|220159 pfam09269, DUF1967, Domain of unknown function (DUF1967)

 Score = 81.3 bits (202), Expect = 1e-21
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 34  FEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDT 93
           F I  +     + V G  ++R V+MTN+   +S RRF   L+  GV  +L K G K+GDT
Sbjct: 1   FTIERE-DDGVFVVEGEKIERLVKMTNFDNDESLRRFARILKKLGVEDALRKAGAKDGDT 59

Query: 94  VIVGDMEMVW 103
           V +GD E  +
Sbjct: 60  VRIGDFEFEF 69

Members of this family contain a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. They are predominantly found in the bacterial GTP-binding protein Obg, and are still functionally uncharacterized. Length = 69

>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed

 Score = 66.7 bits (164), Expect = 5e-14
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 32  NDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEG 91
            DF I  D     + V G  ++R  +MTN+   +S RRF   L   GV  +L + G K+G
Sbjct: 352 KDFTITRDED-GVFVVSGEKIERLFKMTNFNRDESLRRFARQLRKMGVDDALREAGAKDG 410

Query: 92  DTVIVGDMEMVWHD 105
           DTV +GD E  + D
Sbjct: 411 DTVRIGDFEFEFVD 424

Length = 424

>gnl|CDD|188347 TIGR03595, Obg_CgtA_exten, Obg family GTPase CgtA, C-terminal extension

 Score = 60.2 bits (147), Expect = 2e-13
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 34  FEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDT 93
           FEI  D     + V G  ++R+V  T +   ++ RRF   L+  GV  +L K G K+GDT
Sbjct: 1   FEIERD-EDGVFVVSGKKIERWVAKTPFNNDENLRRFARKLKKLGVEDALRKAGAKDGDT 59

Query: 94  VIVGDMEMVW 103
           V +GD E  W
Sbjct: 60  VRIGDFEFEW 69

CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
PF09269	69	DUF1967: Domain of unknown function (DUF1967); Int	99.96
TIGR03595	69	Obg_CgtA_exten Obg family GTPase CgtA, C-terminal	99.96
PRK12297	424	obgE GTPase CgtA; Reviewed	99.83
PRK12296	500	obgE GTPase CgtA; Reviewed	99.8
COG2012	80	RPB5 DNA-directed RNA polymerase, subunit H, RpoH/	86.03

>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []

Probab=99.96  E-value=2.3e-29  Score=169.44  Aligned_cols=69  Identities=45%  Similarity=0.672  Sum_probs=60.5

Q ss_pred             cEEEEcCCCCeEEEEcchHHHHHHhcCCCCHHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEcCEEEEE
Q 044269           34 FEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVW  103 (129)
Q Consensus        34 f~I~k~~e~g~f~V~G~~IEr~v~~tnfd~~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IGd~EFey  103 (129)
                      |+|+++ ++|+|+|+|++||++++||||+++||+.||+++|+++||+++|+++||++||||+||++||+|
T Consensus         1 F~I~~~-~~g~~~V~g~~ie~~~~~~~~~~~e~~~rf~~~L~~~Gv~~~L~~~G~~~GD~V~Ig~~eFe~   69 (69)
T PF09269_consen    1 FEIERE-DEGVFVVEGPKIERLVAMTNFDDEESLRRFQRKLKKMGVEKALRKAGAKEGDTVRIGDYEFEY   69 (69)
T ss_dssp             -EEEEE-ETTEEEEE-HHHHHHHTTEEE-TGGGHHHHHHHHHHTTHHHHHHTTT--TT-EEEETTEEEE-
T ss_pred             CEEEEc-CCceEEEEChHHHHHHHhcCCCCHHHHHHHHHHHHHCCHHHHHHHcCCCCCCEEEEcCEEEEC
Confidence            789997 579999999999999999999999999999999999999999999999999999999999998

OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.

>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension

Probab=99.96  E-value=9.4e-29  Score=166.64  Aligned_cols=69  Identities=39%  Similarity=0.658  Sum_probs=66.2

Q ss_pred             cEEEEcCCCCeEEEEcchHHHHHHhcCCCCHHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEcCEEEEE
Q 044269           34 FEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVW  103 (129)
Q Consensus        34 f~I~k~~e~g~f~V~G~~IEr~v~~tnfd~~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IGd~EFey  103 (129)
                      |+|++. ++|+|+|+|++|||+++||||+++||+.||+++|+++||+++|+++||++||||+||++||+|
T Consensus         1 f~i~~~-~~~~~~V~g~~ier~~~~~~~~~~e~~~~f~~~L~~~Gv~~~L~~~G~~~GD~V~Ig~~eFe~   69 (69)
T TIGR03595         1 FEIERD-EDGVFVVSGKKIERWVAKTPFNNDENLRRFARKLKKLGVEDALRKAGAKDGDTVRIGDFEFEW   69 (69)
T ss_pred             CEEEEC-CCCeEEEechHHHHHHHHcCCCCHHHHHHHHHHHHHCCHHHHHHHcCCCCCCEEEEccEEEeC
Confidence            578886 578999999999999999999999999999999999999999999999999999999999997

CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.83  E-value=1.7e-20  Score=161.81  Aligned_cols=73  Identities=38%  Similarity=0.632  Sum_probs=69.1

Q ss_pred             CCcEEEEcCCCCeEEEEcchHHHHHHhcCCCCHHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEcCEEEEEEe
Q 044269           32 NDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHD  105 (129)
Q Consensus        32 ~~f~I~k~~e~g~f~V~G~~IEr~v~~tnfd~~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IGd~EFey~e  105 (129)
                      ++|.|.+. ++|.|+|.|++||++++||||+++|++.||+++|+++||+++|+++||++||+|+||++||+|++
T Consensus       352 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~l~~~g~~~gd~v~i~~~~f~~~~  424 (424)
T PRK12297        352 KDFTITRD-EDGVFVVSGEKIERLFKMTNFNRDESLRRFARQLRKMGVDDALREAGAKDGDTVRIGDFEFEFVD  424 (424)
T ss_pred             CCcEEEEC-CCCcEEEeChHHHHHHhhccCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEECCEEEEEeC
Confidence            46888876 57899999999999999999999999999999999999999999999999999999999999974

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.80  E-value=2.2e-19  Score=157.97  Aligned_cols=76  Identities=25%  Similarity=0.488  Sum_probs=71.1

Q ss_pred             CCcEEEEcCCC--CeEEEEcchHHHHHHhcCCCCHHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEc---CEEEEEEec
Q 044269           32 NDFEIFHDSGS--NTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVG---DMEMVWHDS  106 (129)
Q Consensus        32 ~~f~I~k~~e~--g~f~V~G~~IEr~v~~tnfd~~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IG---d~EFey~ed  106 (129)
                      ..|+|.++ ++  |.|+|.|+++|||++||||+++||+.||+++|+++||+++|+++||++||+|+||   +++|+|++.
T Consensus       364 ~~~~i~~~-~~~~~~~~v~g~~~e~~~~~~~~~~~e~~~~~~~~l~~~gv~~~l~~~g~~~gd~v~i~~~~~~~f~~~~~  442 (500)
T PRK12296        364 AGFTVERD-GDGEGGFRVRGEKPERWVRQTDFDNDEAVGYLADRLARLGVEDELLKAGARPGDAVTIGTGNGVVFDWEPT  442 (500)
T ss_pred             CCcEEEeC-CCCCCcEEEeCchHHHHHhccCCCCHHHHHHHHHHHHHCCHHHHHHHcCCCCCCEEEECCCCCEEEEEeec
Confidence            35899886 45  8999999999999999999999999999999999999999999999999999999   999999987


Q ss_pred             CC
Q 044269          107 AN  108 (129)
Q Consensus       107 ~~  108 (129)
                      ..
T Consensus       443 ~~  444 (500)
T PRK12296        443 TP  444 (500)
T ss_pred             cc
Confidence            54

>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]

Probab=86.03  E-value=0.87  Score=31.97  Aligned_cols=15  Identities=40%  Similarity=0.507  Sum_probs=13.1

Q ss_pred             HHHcCCCCCCEEEEc
Q 044269           83 LMKLGVKEGDTVIVG   97 (129)
Q Consensus        83 LkkaGakeGDtV~IG   97 (129)
                      -+..||+.||.|+|=
T Consensus        50 a~~lgak~GdvVkIv   64 (80)
T COG2012          50 AKALGAKPGDVVKIV   64 (80)
T ss_pred             HHHccCCCCcEEEEE
Confidence            577899999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	5e-21

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 Length = 416

 Score = 85.7 bits (213), Expect = 5e-21
 Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 12/108 (11%)

Query: 9   DGTDQVNLNQVADLVNKQRSASI----------NDFEIFHDSGSNTWNVVGAGLQRFVQM 58
            G   +    +  LV       +             E+   +    + V    ++R++  
Sbjct: 310 AGLPAL-KEALHALVRSTPPPEMPKPVPRKEVQAGVEVVPVAE-GVYEVRAPEVERYLAR 367

Query: 59  TNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHDS 106
                +++    Q      GV  +L   GV+ GD V +G +E  +   
Sbjct: 368 IKGDLMEAAGYLQEVFRRQGVEAALRAKGVRAGDLVRIGGLEFEYIPE 415

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.82
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	92.22
3lae_A	81	UPF0053 protein HI0107; APC85784.2, conserved prot	84.94
2p13_A	90	CBS domain; alpha-beta structure, structural genom	84.86
2pli_A	91	Uncharacterized protein; CORC-associated region, M	83.25

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.82  E-value=3.4e-20  Score=157.22  Aligned_cols=91  Identities=18%  Similarity=0.287  Sum_probs=79.0

Q ss_pred             hHHHHHHHHhhcccCC----------CCCcEEEEcCCCCeEEEEcchHHHHHHhcCCCCHHHHHHHHHHHHHCChHHHHH
Q 044269           15 NLNQVADLVNKQRSAS----------INDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLM   84 (129)
Q Consensus        15 ~l~~v~~~L~~~~~~~----------~~~f~I~k~~e~g~f~V~G~~IEr~v~~tnfd~~es~~rF~r~Lk~~GV~~aLk   84 (129)
                      ++..++++|...+..+          .+.|+|.++ ++|+|+|+|+.+||+++||||+++|++.||+++|+++||+++|+
T Consensus       315 L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~l~  393 (416)
T 1udx_A          315 LKEALHALVRSTPPPEMPKPVPRKEVQAGVEVVPV-AEGVYEVRAPEVERYLARIKGDLMEAAGYLQEVFRRQGVEAALR  393 (416)
T ss_dssp             HHHHHHHHHHTSCCCCCCCCCC----CCCCEEEEE-ETTEEEEECHHHHHHHTTEEECTGGGHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHhcccccccccccccccCCCcEEEEc-CCCeEEEeChHHHHHHHhcCCCCHHHHHHHHHHHHHCCHHHHHH
Confidence            3477777776443211          237999886 58999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCCEEEEcCEEEEEEec
Q 044269           85 KLGVKEGDTVIVGDMEMVWHDS  106 (129)
Q Consensus        85 kaGakeGDtV~IGd~EFey~ed  106 (129)
                      ++||++||+|+||++||+|+++
T Consensus       394 ~~g~~~gd~v~i~~~~f~~~~~  415 (416)
T 1udx_A          394 AKGVRAGDLVRIGGLEFEYIPE  415 (416)
T ss_dssp             TTTCCTTCEEEETTEEEECCCC
T ss_pred             HcCCCCCCEEEEecEEEEEecC
Confidence            9999999999999999999874

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=92.22  E-value=0.095  Score=44.36  Aligned_cols=42  Identities=5%  Similarity=0.017  Sum_probs=37.8

Q ss_pred             CeEEEEcchHHHHHHhcCCCCHHHHHHHHHHHHHCChHHHHH
Q 044269           43 NTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLM   84 (129)
Q Consensus        43 g~f~V~G~~IEr~v~~tnfd~~es~~rF~r~Lk~~GV~~aLk   84 (129)
                      +.+.+.++.+++++++++|++++++.+|++.|..+|+.=-..
T Consensus       234 ~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~G~il~f~  275 (535)
T 3dpu_A          234 AQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIVLYFE  275 (535)
T ss_dssp             HSSEECHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTSSBCCT
T ss_pred             cCCcccHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcEEEEcC
Confidence            368999999999999999999999999999999999964443

>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*

Probab=84.94  E-value=1.6  Score=28.23  Aligned_cols=59  Identities=15%  Similarity=0.203  Sum_probs=38.9

Q ss_pred             EEEcCCCCeEEEEcc-hHHHHHHhcCCC----CHHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEcCEEEEEE
Q 044269           36 IFHDSGSNTWNVVGA-GLQRFVQMTNWR----YLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWH  104 (129)
Q Consensus        36 I~k~~e~g~f~V~G~-~IEr~v~~tnfd----~~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IGd~EFey~  104 (129)
                      |.+. ++|.|.|.|. .|+.+...++++    +++.+.=|  ++..+|      . =-+.||+|.++++.|+=.
T Consensus         3 i~~~-~dg~~~v~g~~~l~dl~~~l~~~l~~~~~~Tl~G~--i~~~lg------~-iP~~Gd~v~~~~~~f~V~   66 (81)
T 3lae_A            3 AIQQ-SDGSMIIDGSANLRDLNKMFNWELDTEDARTFNGL--ILEHLE------E-IPDEGTICEIDGLLITIL   66 (81)
T ss_dssp             EEEC-TTSCEEEETTCBHHHHHHHHCCCCCCSSCSBHHHH--HHHHCS------S-CCCTTCEEEETTEEEEEE
T ss_pred             cEEe-CCCEEEEEeeCCHHHHHHHhCCCCCCCCCccHHHH--HHHHhC------C-CCCCCCEEEECCEEEEEE
Confidence            5555 4889999996 566666666653    33455444  223333      1 257899999999999853

>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4

Probab=84.86  E-value=2.7  Score=27.57  Aligned_cols=59  Identities=12%  Similarity=0.152  Sum_probs=38.7

Q ss_pred             EEEEcCCCCeEEEEcc-hHHHHHHhcCCC------CHHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEcCEEEEE
Q 044269           35 EIFHDSGSNTWNVVGA-GLQRFVQMTNWR------YLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVW  103 (129)
Q Consensus        35 ~I~k~~e~g~f~V~G~-~IEr~v~~tnfd------~~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IGd~EFey  103 (129)
                      .|.+. ++|.|.|.|. .|+.+-..++++      +++.+.=|  ++..+|       .=-+.||+|.++++.|+=
T Consensus         8 ~i~~~-~dg~~~v~G~~~l~dl~~~l~~~l~~~~~~~~TlgG~--i~~~lg-------~iP~~Gd~v~~~~~~f~V   73 (90)
T 2p13_A            8 VAEQQ-ADGTWLMDGWISIRKASNLLEHDLVDEAERYSTLGGY--LLWQFG-------YIPAAGEQITVDGLIFEI   73 (90)
T ss_dssp             SEEEC-TTSCEEEETTSBHHHHHHHHTSCCCCTTCCCCBHHHH--HHHHHS-------SCCCTTCEEEETTEEEEE
T ss_pred             ceEEe-CCCEEEEECcCCHHHHHHHHCCCCCCcCCCCccHHHH--HHHHhC-------CCCCCCCEEEECCEEEEE
Confidence            36665 4889999997 567776666653      24455444  223333       113779999999999984

>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4

Probab=83.25  E-value=3.1  Score=27.43  Aligned_cols=60  Identities=15%  Similarity=0.253  Sum_probs=39.0

Q ss_pred             EEEcCCCCeEEEEcc-hHHHHHHhcCCC----CHHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEcCEEEEEEe
Q 044269           36 IFHDSGSNTWNVVGA-GLQRFVQMTNWR----YLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHD  105 (129)
Q Consensus        36 I~k~~e~g~f~V~G~-~IEr~v~~tnfd----~~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IGd~EFey~e  105 (129)
                      |.+. ++|.|.|.|. .|+.+-..++++    +++.+.=|  ++..+|       .=-+.||+|.++++.|+=.+
T Consensus        12 i~~~-~dg~~~v~G~~~l~dl~~~l~~~l~~~~~dTlgG~--i~~~lg-------~iP~~Ge~v~~~~~~f~V~~   76 (91)
T 2pli_A           12 IHAV-SSERWRIHAATEIEDINTFFGTEYSSEEADTIGGL--VIQELG-------HLPVRGEKVLIGGLQFTVAR   76 (91)
T ss_dssp             EEEE-ETTEEEEETTCBHHHHHHHHCCCCCCSSCCBHHHH--HHHHHS-------SCCCTTCEEEETTEEEEEEE
T ss_pred             eEEe-CCCEEEEEcCCCHHHHHHHhCCCCCCCCCccHHHH--HHHHhC-------CCCCCCCEEEECCEEEEEEE
Confidence            5554 4789999997 577777776653    34455433  222233       11367999999999998543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	129
d1udxa3	76	d.242.1.1 (A:341-416) Obg GTP-binding protein C-te	2e-19

>d1udxa3 d.242.1.1 (A:341-416) Obg GTP-binding protein C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 76

class: Alpha and beta proteins (a+b)
fold: Obg GTP-binding protein C-terminal domain
superfamily: Obg GTP-binding protein C-terminal domain
family: Obg GTP-binding protein C-terminal domain
domain: Obg GTP-binding protein C-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 74.2 bits (183), Expect = 2e-19
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 34  FEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDT 93
            E+        + V    ++R++       +++    Q      GV  +L   GV+ GD 
Sbjct: 4   VEVVPV-AEGVYEVRAPEVERYLARIKGDLMEAAGYLQEVFRRQGVEAALRAKGVRAGDL 62

Query: 94  VIVGDMEMVWHDS 106
           V +G +E  +   
Sbjct: 63  VRIGGLEFEYIPE 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d1udxa3	76	Obg GTP-binding protein C-terminal domain {Thermus	99.96
d2plsa1	84	Hypothetical protein CT0541 {Chlorobium tepidum [T	89.43
d2affa1	98	Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]}	85.11
d1zq1a1	74	Glutamyl-tRNA(Gln) amidotransferase subunit D, Gat	83.81
d2cqaa1	82	RuvB-like 2 protein, RUVBL2 (TIP49b) {Human (Homo	83.62
d2oaia1	87	Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]}	80.92
d2d6fa1	72	Glutamyl-tRNA(Gln) amidotransferase subunit D, Gat	80.89
d2plia1	84	Uncharacterized protein NMB0537 {Neisseria meningi	80.85
d2nqwa1	87	Hypothetical protein PG0272 {Porphyromonas gingiva	80.69

>d1udxa3 d.242.1.1 (A:341-416) Obg GTP-binding protein C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Obg GTP-binding protein C-terminal domain
superfamily: Obg GTP-binding protein C-terminal domain
family: Obg GTP-binding protein C-terminal domain
domain: Obg GTP-binding protein C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=6.1e-30  Score=172.96  Aligned_cols=74  Identities=19%  Similarity=0.342  Sum_probs=71.2

Q ss_pred             CCcEEEEcCCCCeEEEEcchHHHHHHhcCCCCHHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEcCEEEEEEec
Q 044269           32 NDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHDS  106 (129)
Q Consensus        32 ~~f~I~k~~e~g~f~V~G~~IEr~v~~tnfd~~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IGd~EFey~ed  106 (129)
                      ..|+|++. ++|+|+|+|++|||+++||||+++||+.||+++|+++||+++|+++|||+||||+||++||+|.++
T Consensus         2 ~g~~V~~~-~dg~f~V~G~~ier~~~~t~~~~~e~~~~f~~~l~~~Gv~~~L~~~Gak~GD~V~Ig~~eFey~~~   75 (76)
T d1udxa3           2 AGVEVVPV-AEGVYEVRAPEVERYLARIKGDLMEAAGYLQEVFRRQGVEAALRAKGVRAGDLVRIGGLEFEYIPE   75 (76)
T ss_dssp             CCCEEEEE-ETTEEEEECHHHHHHHTTEEECTGGGHHHHHHHHHHTTHHHHHHTTTCCTTCEEEETTEEEECCCC
T ss_pred             CceEEEEC-CCCeEEEEccHHHHHHHhcCCCCHHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEECCEEEEEecC
Confidence            46899997 699999999999999999999999999999999999999999999999999999999999999886

>d2plsa1 d.145.1.4 (A:345-428) Hypothetical protein CT0541 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein CT0541
species: Chlorobium tepidum [TaxId: 1097]

Probab=89.43  E-value=0.41  Score=29.87  Aligned_cols=58  Identities=10%  Similarity=0.106  Sum_probs=37.5

Q ss_pred             EEEcCCCCeEEEEcc-hHHHHHHhcCCCC--------HHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEcCEEEEEE
Q 044269           36 IFHDSGSNTWNVVGA-GLQRFVQMTNWRY--------LDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWH  104 (129)
Q Consensus        36 I~k~~e~g~f~V~G~-~IEr~v~~tnfd~--------~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IGd~EFey~  104 (129)
                      |.+  ++|.|.|.|. .|+.+...++++-        ++++.=|        |...|. .=-+.||+|.++++.|+=.
T Consensus         2 v~~--~dg~~~v~G~~~l~dl~~~l~~~~~~~~e~~~~~Tl~G~--------i~~~lg-~iP~~Ge~v~~~~~~f~V~   68 (84)
T d2plsa1           2 VQR--EDGSWLLDGLIAVPELKDTLGLRAVPEEEKGVYHTLSGM--------IMWLLG-RLPQTGDITFWENWRLEVI   68 (84)
T ss_dssp             EEC--TTSCEEEETTCBHHHHHHHHTCSCCTTTTSCSCCBHHHH--------HHHHHT-SCCCTTCEEEETTEEEEEE
T ss_pred             eEe--cCCeEEEEccCCHHHHHHHHCCCCCcccccccccCHHHH--------HHHHhC-ccCCCCCEEEECCEEEEEE
Confidence            445  3899999997 4666666665532        3566544        122221 1138999999999999843

>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Antigen ki-67
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.11  E-value=0.31  Score=31.01  Aligned_cols=20  Identities=20%  Similarity=0.443  Sum_probs=17.7

Q ss_pred             CCCCCCEEEEcCEEEEEEec
Q 044269           87 GVKEGDTVIVGDMEMVWHDS  106 (129)
Q Consensus        87 GakeGDtV~IGd~EFey~ed  106 (129)
                      =+++||+|.||+.+|.|+.|
T Consensus        79 ~L~~Gd~I~iG~~~~~fe~e   98 (98)
T d2affa1          79 RLKHGDVITIIDRSFRYENE   98 (98)
T ss_dssp             EECTTCEEEETTEEEEEEEC
T ss_pred             ECCCCCEEEECCEEEEEEeC
Confidence            48999999999999998764

>d1zq1a1 b.38.3.1 (A:2-75) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}

class: All beta proteins
fold: Sm-like fold
superfamily: GatD N-terminal domain-like
family: GatD N-terminal domain-like
domain: Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD
species: Pyrococcus abyssi [TaxId: 29292]

Probab=83.81  E-value=0.32  Score=30.91  Aligned_cols=18  Identities=28%  Similarity=0.353  Sum_probs=16.2

Q ss_pred             hHHHHHHcCCCCCCEEEE
Q 044269           79 VTKSLMKLGVKEGDTVIV   96 (129)
Q Consensus        79 V~~aLkkaGakeGDtV~I   96 (129)
                      +.+-|++.|+..||.|+|
T Consensus         2 ~~~fl~~~~~~~GD~Vri   19 (74)
T d1zq1a1           2 VDEFLKERNINVGDFVRI   19 (74)
T ss_dssp             HHHHHHHTTCCTTCEEEE
T ss_pred             HHHHHHHcCCCCCCEEEE
Confidence            457799999999999999

>d2cqaa1 b.40.4.14 (A:8-89) RuvB-like 2 protein, RUVBL2 (TIP49b) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: TIP49 domain
domain: RuvB-like 2 protein, RUVBL2 (TIP49b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.62  E-value=0.37  Score=31.26  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=25.2

Q ss_pred             hHHHHHHcCCCCCCEEEEcCEEEEEEecCCCCCCCccccccccc
Q 044269           79 VTKSLMKLGVKEGDTVIVGDMEMVWHDSANNPGPSKAKKGFEDS  122 (129)
Q Consensus        79 V~~aLkkaGakeGDtV~IGd~EFey~ed~~~~~~~~~~~~~~~~  122 (129)
                      +.++|.+.+++.||.|.|         |.+++.+++.-+||.-|
T Consensus        47 i~e~L~kekV~~GDVI~I---------D~~sG~V~klGRs~~~a   81 (82)
T d2cqaa1          47 MIESLTKDKVQAGDVITI---------DKATGKISKLGRSFTRA   81 (82)
T ss_dssp             HHHHHHHTTCCTTSEEEE---------ETTTTEEEEEECCCCCC
T ss_pred             HHHHHHHcCCCcCCEEEE---------ECCCcEEEEeeecceec
Confidence            678899999999999998         34555555555555433

>d2oaia1 d.145.1.4 (A:5-91) Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hemolysin TlyC
species: Xylella fastidiosa [TaxId: 2371]

Probab=80.92  E-value=2.1  Score=26.62  Aligned_cols=59  Identities=3%  Similarity=-0.012  Sum_probs=36.0

Q ss_pred             EEEcCCCCeEEEEcc-hHHHHHHhcCCCC-------HHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEcCEEEEEE
Q 044269           36 IFHDSGSNTWNVVGA-GLQRFVQMTNWRY-------LDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWH  104 (129)
Q Consensus        36 I~k~~e~g~f~V~G~-~IEr~v~~tnfd~-------~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IGd~EFey~  104 (129)
                      |.+. ++|.|.|.|. .|+.+-+.++++-       ++.+.=|        |...|. .=-+.||+|.+++++|+=.
T Consensus         5 i~~~-~dg~~~v~G~~~l~dl~~~l~~~l~~~e~~~~~Tl~G~--------i~~~lg-~iP~~Ge~v~~~~~~f~V~   71 (87)
T d2oaia1           5 MVTR-EDGSFLIDGTLPIEELREVLGAELPDGEENNYHTLAGM--------CISYFG-RIPHVGEYFDWAGWRIEIV   71 (87)
T ss_dssp             EEEC-TTSCEEEETTCBHHHHHHHHTC-------CCCSBHHHH--------HHHHHS-SCCCTTCEEEETTEEEEEE
T ss_pred             eEEc-CCCEEEEEecCCHHHHHHHHCCCCCcccccccccHHHH--------HHHHhC-cCCCCCCEEEECCEEEEEE
Confidence            5554 4899999996 4666666665543       2234333        112221 1138999999999999843

>d2d6fa1 b.38.3.1 (A:2-73) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Sm-like fold
superfamily: GatD N-terminal domain-like
family: GatD N-terminal domain-like
domain: Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=80.89  E-value=0.74  Score=29.11  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=18.9

Q ss_pred             hHHHHHHcCCCCCCEEEEc--CEEEE
Q 044269           79 VTKSLMKLGVKEGDTVIVG--DMEMV  102 (129)
Q Consensus        79 V~~aLkkaGakeGDtV~IG--d~EFe  102 (129)
                      +.+-|++.|+..||.|+|-  +.+|+
T Consensus         6 ~~~fL~~~~i~vGD~V~i~~~~~~~e   31 (72)
T d2d6fa1           6 ARKFLESASIDVGDMVLVEKPDVTYE   31 (72)
T ss_dssp             HHHHHHTTTCCTTCEEEEECSSCEEE
T ss_pred             HHHHHHHcCCCCCCEEEEEECCcEEE
Confidence            3567899999999999994  55554

>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537 {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein NMB0537
species: Neisseria meningitidis [TaxId: 487]

Probab=80.85  E-value=1.7  Score=26.96  Aligned_cols=59  Identities=17%  Similarity=0.251  Sum_probs=37.8

Q ss_pred             EEEcCCCCeEEEEcc-hHHHHHHhcCCC----CHHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEcCEEEEEE
Q 044269           36 IFHDSGSNTWNVVGA-GLQRFVQMTNWR----YLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWH  104 (129)
Q Consensus        36 I~k~~e~g~f~V~G~-~IEr~v~~tnfd----~~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IGd~EFey~  104 (129)
                      |.+. +++.|+|.|. .|+.+...++++    +++.+.=|        |.+.|. .=-+.||+|.++++.|+=.
T Consensus         5 I~~~-~~~~~~v~g~~~l~dl~~~~~~~l~~~~~~TigG~--------i~~~l~-~iP~~g~~v~~~~~~f~V~   68 (84)
T d2plia1           5 IHAV-SSERWRIHAATEIEDINTFFGTEYSSEEADTIGGL--------VIQELG-HLPVRGEKVLIGGLQFTVA   68 (84)
T ss_dssp             EEEE-ETTEEEEETTCBHHHHHHHHCCCCCCSSCCBHHHH--------HHHHHS-SCCCTTCEEEETTEEEEEE
T ss_pred             eEEe-CCCEEEEEecCCHHHHHHHhCCCCCccccHHHHHH--------HHHHhC-ccccCCcEEEECCEEEEEE
Confidence            5555 4789999996 566666666655    33344322        122221 2248999999999999843

>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein PG0272
species: Porphyromonas gingivalis [TaxId: 837]

Probab=80.69  E-value=2.4  Score=26.19  Aligned_cols=57  Identities=12%  Similarity=0.091  Sum_probs=36.7

Q ss_pred             EEEcCCCCeEEEEcch-HHHHHHhcCCCC---------HHHHHHH-HHHHHHCChHHHHHHcCC-CCCCEEEEcCEEEEE
Q 044269           36 IFHDSGSNTWNVVGAG-LQRFVQMTNWRY---------LDSERRF-QHGLEACGVTKSLMKLGV-KEGDTVIVGDMEMVW  103 (129)
Q Consensus        36 I~k~~e~g~f~V~G~~-IEr~v~~tnfd~---------~es~~rF-~r~Lk~~GV~~aLkkaGa-keGDtV~IGd~EFey  103 (129)
                      +.+. ++|.|.|.|.- |+.+-+.++++-         ++.+.=| ...|   |        .+ +.||+|.++++.|+=
T Consensus         3 ~~ki-~d~~~~v~G~~~l~dl~~~l~~~l~~~~~~~~~~~Ti~G~i~~~l---g--------~iP~~Ge~v~~~~~~f~V   70 (87)
T d2nqwa1           3 FKVL-GDGSYLFEGKTSLSDVRHYLDLPENAFGELGDEVDTLSGLFLEIK---Q--------ELPHVGDTAVYEPFRFQV   70 (87)
T ss_dssp             EEEC-TTSCEEEETTCBHHHHHHHHTCCTTTTHHHHTTCSBHHHHHHHHH---C--------SCCCTTCEEEETTEEEEE
T ss_pred             eEEE-CCCEEEEEEeCCHHHHHHHhCCCcccccCcccceeeHHHHHHHHh---C--------ccccCCeEEEECCEEEEE
Confidence            3455 48999999974 666666665432         3444333 2222   1        24 899999999999984


Q ss_pred             E
Q 044269          104 H  104 (129)
Q Consensus       104 ~  104 (129)
                      .
T Consensus        71 ~   71 (87)
T d2nqwa1          71 T   71 (87)
T ss_dssp             E
T ss_pred             E
Confidence            3