Citrus Sinensis ID: 044278

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
Protein Sequence
MPVMAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMSLVSRRRTRTASFGCLGRSGFHPTRRWEIKVEENEDN
Secondary Structure (PSIPRED)
ccccccccccccHHHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHccccHHHHHcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mpvmaqgtgrsLYEVLRVEPMTTISEIKTTYRSLAkvyhpdlsgnsqdfIKIHNIyetlsdpttravydmslvsrrrtrtasfgclgrsgfhptrrweikveenedn
Flexible Loop (DISEMBL)
mpvmaqgtgrslyevlrvEPMTTISEIKTTYRSLAKVYhpdlsgnsqdFIKIHNIyetlsdpttraVYDMSLvsrrrtrtasfgclgrsgfhptrrweikveenedn
Low Complexity Region (SEG)
MPVMAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMSLVSRRRTRTASFGCLGRSGFHPTRRWEIKVEENEDN
Disordered region (IsUnstruct)
***********LYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMSLVSRRRTRTASFGCLGRSGFHPTRRWEI********
Disordered Region (DISOPRED)
**********SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMSL***********************************
Disordered Region (DISEMBL)
********GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMSLVSRRRTRTASFGCLGRSGFHPTRRWEIKVEENEDN
Disordered Region (DISPRO)
*******TGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMSLVS**********************WE*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPVMAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMSLVSRRRTRTASFGCLGRSGFHPTRRWEIKVEENEDN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	107	2.2.26 [Sep-21-2011]
Q9FYB5	161	Chaperone protein dnaJ 11	no	no	0.794	0.527	0.421	2e-11
Q50312	309	DnaJ-like protein MG002 h	yes	no	0.579	0.200	0.476	1e-09
Q71ZJ8	376	Chaperone protein DnaJ OS	yes	no	0.560	0.159	0.476	1e-08
C1KVB9	376	Chaperone protein DnaJ OS	yes	no	0.560	0.159	0.476	1e-08
Q2HJ94	412	DnaJ homolog subfamily A	yes	no	0.616	0.160	0.447	2e-08
P0DJM1	377	Chaperone protein DnaJ OS	yes	no	0.560	0.159	0.460	2e-08
B8DE39	376	Chaperone protein DnaJ OS	yes	no	0.560	0.159	0.460	2e-08
G2K045	377	Chaperone protein DnaJ OS	yes	no	0.560	0.159	0.460	2e-08
Q92BN9	376	Chaperone protein DnaJ OS	yes	no	0.560	0.159	0.460	2e-08
P47248	310	DnaJ-like protein MG002 O	yes	no	0.579	0.2	0.444	2e-08

>sp|Q9FYB5|DNJ11_ARATH Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 10/95 (10%)

Query: 11  SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG-------NSQDFIKIHNIYETLSDPT 63
           SLY+VL V    T  +IK+ YR LA++ HPD++G       ++ +F+KIH  Y TLSDP 
Sbjct: 65  SLYDVLEVPLGATSQDIKSAYRRLARICHPDVAGTDRTSSSSADEFMKIHAAYCTLSDPE 124

Query: 64  TRAVYDMSLVSRRRTRTASFGCLGRSGFHPTRRWE 98
            R+VYD  ++  RR+R  + G  G  G +  R WE
Sbjct: 125 KRSVYDRRML--RRSRPLTVGTSGL-GSYVGRNWE 156

Have a continuous role in plant development probably in the structural organization of compartments.
Arabidopsis thaliana (taxid: 3702)

>sp|Q50312|DNAJL_MYCPN DnaJ-like protein MG002 homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=MPN_002 PE=4 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 11 SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD-FIKIHNIYETLSDPTTRAVYD 69
          +LY++L +    T+ EIKT Y+ LAK YHPD++    D F+KI+N Y  LSD T +A YD
Sbjct: 2  TLYDLLELPQTATLQEIKTAYKRLAKRYHPDINKQGADTFVKINNAYAVLSDTTQKAEYD 61

Query: 70 MSL 72
            L
Sbjct: 62 AML 64

Mycoplasma pneumoniae (strain ATCC 29342 / M129) (taxid: 272634)

>sp|Q71ZJ8|DNAJ_LISMF Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4b (strain F2365) GN=dnaJ PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDL---SGNSQDFIKIHNIYETLSDPTTRA 66
          R  YEVL V    +  EIK  YR L+K YHPD+   +G  + F +I   YE LSDP  RA
Sbjct: 4  RDYYEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRA 63

Query: 67 VYD 69
           YD
Sbjct: 64 QYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

>sp|C1KVB9|DNAJ_LISMC Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=dnaJ PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDL---SGNSQDFIKIHNIYETLSDPTTRA 66
          R  YEVL V    +  EIK  YR L+K YHPD+   +G  + F +I   YE LSDP  RA
Sbjct: 4  RDYYEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRA 63

Query: 67 VYD 69
           YD
Sbjct: 64 QYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 4b (strain Clip81459) (taxid: 568819)

>sp|Q2HJ94|DNJA2_BOVIN DnaJ homolog subfamily A member 2 OS=Bos taurus GN=DNAJA2 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 4  MAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD-FIKIHNIYETLSDP 62
          MA      LY++L V P  + +E+K  YR LAK YHPD + N+ D F +I   YE LS+P
Sbjct: 1  MANVADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNP 60

Query: 63 TTRAVYD 69
            R +YD
Sbjct: 61 EKRELYD 67

Co-chaperone of Hsc70.

Bos taurus (taxid: 9913)

>sp|P0DJM1|DNAJ_LISMO Chaperone protein DnaJ OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=dnaJ PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDL---SGNSQDFIKIHNIYETLSDPTTRA 66
          R  YEVL +    +  EIK  YR L+K YHPD+   +G  + F +I   YE LSDP  RA
Sbjct: 4  RDYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRA 63

Query: 67 VYD 69
           YD
Sbjct: 64 QYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

>sp|B8DE39|DNAJ_LISMH Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=dnaJ PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDL---SGNSQDFIKIHNIYETLSDPTTRA 66
          R  YEVL +    +  EIK  YR L+K YHPD+   +G  + F +I   YE LSDP  RA
Sbjct: 4  RDYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRA 63

Query: 67 VYD 69
           YD
Sbjct: 64 QYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 4a (strain HCC23) (taxid: 552536)

>sp|G2K045|DNAJ_LISM4 Chaperone protein DnaJ OS=Listeria monocytogenes serotype 1/2a (strain 10403S) GN=dnaJ PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDL---SGNSQDFIKIHNIYETLSDPTTRA 66
          R  YEVL +    +  EIK  YR L+K YHPD+   +G  + F +I   YE LSDP  RA
Sbjct: 4  RDYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRA 63

Query: 67 VYD 69
           YD
Sbjct: 64 QYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 1/2a (strain 10403S) (taxid: 393133)

>sp|Q92BN9|DNAJ_LISIN Chaperone protein DnaJ OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=dnaJ PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDL---SGNSQDFIKIHNIYETLSDPTTRA 66
          R  YEVL +    +  EIK  YR L+K YHPD+   +G  + F +I   YE LSDP  RA
Sbjct: 4  RDYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRA 63

Query: 67 VYD 69
           YD
Sbjct: 64 QYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria innocua serovar 6a (strain CLIP 11262) (taxid: 272626)

>sp|P47248|DNAJL_MYCGE DnaJ-like protein MG002 OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=MG002 PE=4 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 11 SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG-NSQDFIKIHNIYETLSDPTTRAVYD 69
          +LY++L +    +I EIK  Y+ LAK YHPD++   SQ F++I+N Y  LSDP  +  YD
Sbjct: 2  NLYDLLELPTTASIKEIKIAYKRLAKRYHPDVNKLGSQTFVEINNAYSILSDPNQKEKYD 61

Query: 70 MSL 72
            L
Sbjct: 62 SML 64

Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) (taxid: 243273)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
255579560	168	chaperone protein DNAj, putative [Ricinu	0.803	0.511	0.521	9e-20
225462060	148	PREDICTED: chaperone protein dnaJ 11, ch	0.822	0.594	0.578	2e-19
15231204	157	chaperone DnaJ-domain containing protein	0.794	0.541	0.565	6e-19
297834156	157	DNAJ heat shock N-terminal domain-contai	0.803	0.547	0.560	1e-18
224061637	99	predicted protein [Populus trichocarpa]	0.803	0.868	0.552	7e-18
357460317	161	Chaperone protein dnaJ [Medicago truncat	0.822	0.546	0.530	1e-17
356552398	142	PREDICTED: chaperone protein dnaJ 11, ch	0.813	0.612	0.505	9e-17
224122088	171	predicted protein [Populus trichocarpa]	0.785	0.491	0.490	2e-16
118487648	171	unknown [Populus trichocarpa]	0.785	0.491	0.490	2e-16
224093380	142	predicted protein [Populus trichocarpa]	0.785	0.591	0.489	9e-16

>gi|255579560|ref|XP_002530622.1| chaperone protein DNAj, putative [Ricinus communis] gi|223529832|gb|EEF31765.1| chaperone protein DNAj, putative [Ricinus communis]

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 66/94 (70%), Gaps = 8/94 (8%)

Query: 11  SLYEVLRVEPMTTISEIKTTYRSLAKVYHPD------LSGNSQDFIKIHNIYETLSDPTT 64
           SLYE+LR++   ++ EIKT YRSLAK+YHPD      +  + +DF++IHN YETLSDP  
Sbjct: 72  SLYEILRIKRTASLMEIKTAYRSLAKLYHPDAAVREDVETDGRDFMEIHNAYETLSDPAA 131

Query: 65  RAVYDMSLVSRRRTRTASFGCLGRSGFHPTRRWE 98
           RA+YD+SL +  R R  + G  G  G++PTRRWE
Sbjct: 132 RALYDLSLDAASRRRRPAVGFTG--GYYPTRRWE 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462060|ref|XP_002275924.1| PREDICTED: chaperone protein dnaJ 11, chloroplastic [Vitis vinifera] gi|296090000|emb|CBI39819.3| unnamed protein product [Vitis vinifera]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 65/95 (68%), Gaps = 7/95 (7%)

Query: 11  SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLSDPTTRAV 67
           SLYEVLRV+   + +EIKT YRSLAK+YHPD S    + ++FI+IHN YETLSDP  RAV
Sbjct: 49  SLYEVLRVKQTASPTEIKTAYRSLAKMYHPDASPVDSDGRNFIQIHNAYETLSDPAARAV 108

Query: 68  YDMSLVSRRRTRTA----SFGCLGRSGFHPTRRWE 98
           YD+SL S  R   A    S G  GRS  + TRRWE
Sbjct: 109 YDLSLGSTGRRPYAYACSSGGVRGRSAHYSTRRWE 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231204|ref|NP_187939.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana] gi|9294537|dbj|BAB02800.1| DnaJ-like protein [Arabidopsis thaliana] gi|21592683|gb|AAM64632.1| DnaJ protein, putative [Arabidopsis thaliana] gi|32815917|gb|AAP88343.1| At3g13310 [Arabidopsis thaliana] gi|332641811|gb|AEE75332.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 66/92 (71%), Gaps = 7/92 (7%)

Query: 11  SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS-GNSQDFIKIHNIYETLSDPTTRAVYD 69
           SLYE+L+V    +++EIKT YRSLAKVYHPD S  + +DF++IH  Y TL+DPTTRA+YD
Sbjct: 64  SLYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGRDFMEIHKAYATLADPTTRAIYD 123

Query: 70  MSL-VSRRRTRTASFGCLGRSG--FHPTRRWE 98
            +L V RRR      G +GRSG  +  TRRWE
Sbjct: 124 STLRVPRRRVHA---GAMGRSGRVYATTRRWE 152

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834156|ref|XP_002884960.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330800|gb|EFH61219.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 66/91 (72%), Gaps = 5/91 (5%)

Query: 11  SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS-GNSQDFIKIHNIYETLSDPTTRAVYD 69
           SLYE+L+V    +++EIKT YRSLAKVYHPD S  + +DF++IH  Y TL+DPTTRA+YD
Sbjct: 64  SLYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGRDFMEIHKAYATLADPTTRAIYD 123

Query: 70  MSLVSRRRTRTASFGCLGRSG--FHPTRRWE 98
            +L + RR   A  G +GRSG  +  TRRWE
Sbjct: 124 STLRAPRRRVHA--GAMGRSGRVYTTTRRWE 152

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061637|ref|XP_002300579.1| predicted protein [Populus trichocarpa] gi|222847837|gb|EEE85384.1| predicted protein [Populus trichocarpa]

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/96 (55%), Positives = 60/96 (62%), Gaps = 10/96 (10%)

Query: 11 SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDL-------SGNSQDFIKIHNIYETLSDPT 63
          SLYE+LRV P  +  EIKT YRSLAKVYHPD             DFI+IHN YETLSDP 
Sbjct: 1  SLYEILRVNPTASQVEIKTAYRSLAKVYHPDAMLDRDDEPSEGVDFIEIHNAYETLSDPA 60

Query: 64 TRAVYDMSL-VSRRRTRTASFGCLGRSGFHPTRRWE 98
           RAVYDMSL  + R     + G  G  G++ TRRWE
Sbjct: 61 ARAVYDMSLSAAARDFYRRAVGYSG--GYYTTRRWE 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460317|ref|XP_003600440.1| Chaperone protein dnaJ [Medicago truncatula] gi|358349362|ref|XP_003638707.1| Chaperone protein dnaJ [Medicago truncatula] gi|355489488|gb|AES70691.1| Chaperone protein dnaJ [Medicago truncatula] gi|355504642|gb|AES85845.1| Chaperone protein dnaJ [Medicago truncatula] gi|388517361|gb|AFK46742.1| unknown [Medicago truncatula]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 64/98 (65%), Gaps = 10/98 (10%)

Query: 11  SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG------NSQDFIKIHNIYETLSDPTT 64
           SLYEVLR+ P  +  EIK+ YRSLAKVYHPD +       N  DFI+I N YETLSDP++
Sbjct: 59  SLYEVLRLNPGASAMEIKSAYRSLAKVYHPDAAARRLQECNDGDFIEIRNAYETLSDPSS 118

Query: 65  RAVYDMSLV---SRRRTRTASFGCLGR-SGFHPTRRWE 98
           R +YD+SL+    R R  TA+     R SGF+  RRWE
Sbjct: 119 RQIYDLSLMVHGGRNRRFTAAPVMQKRNSGFYTNRRWE 156

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552398|ref|XP_003544555.1| PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Glycine max]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 67/99 (67%), Gaps = 12/99 (12%)

Query: 11  SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS-----GNSQDFIKIHNIYETLSDPTTR 65
           SLYEVLR++   +  EIK+ YR+LAKVYHPD +      + +DFI+IH+ YETLSDP+ R
Sbjct: 40  SLYEVLRIKQNASAVEIKSAYRNLAKVYHPDSALRRSESDERDFIEIHDAYETLSDPSAR 99

Query: 66  AVYDMSLVSRRRTRTASFGCL-----GRSGF-HPTRRWE 98
           A+YD+SL++  R    SF  L     G SGF + TR+WE
Sbjct: 100 ALYDLSLMA-ARDDNRSFSSLVAAPNGSSGFYYQTRKWE 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122088|ref|XP_002330538.1| predicted protein [Populus trichocarpa] gi|222872096|gb|EEF09227.1| predicted protein [Populus trichocarpa]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 61/102 (59%), Gaps = 18/102 (17%)

Query: 11  SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDL-----------SGNSQDFIKIHNIYETL 59
           SLY+VLRV P  +  EIK+ YRSLAK+YHPD              +  DFI+IH+ YETL
Sbjct: 69  SLYDVLRVNPAASQVEIKSAYRSLAKIYHPDAFLSHDRDHDDEQSDGGDFIEIHSAYETL 128

Query: 60  SDPTTRAVYDMSLVSRRRT---RTASFGCLGRSGFHPTRRWE 98
           SDPT RAVYD+SL +  R    R A +      G + TRRWE
Sbjct: 129 SDPTARAVYDLSLSAAARCFYRRAAGYS----GGDYTTRRWE 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487648|gb|ABK95649.1| unknown [Populus trichocarpa]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 61/102 (59%), Gaps = 18/102 (17%)

Query: 11  SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDL-----------SGNSQDFIKIHNIYETL 59
           SLY+VLRV P  +  EIK+ YRSLAK+YHPD              +  DFI+IH+ YETL
Sbjct: 69  SLYDVLRVNPAASQVEIKSAYRSLAKIYHPDAFLSHDRDHDDEQSDGGDFIEIHSAYETL 128

Query: 60  SDPTTRAVYDMSLVSRRRT---RTASFGCLGRSGFHPTRRWE 98
           SDPT RAVYD+SL +  R    R A +      G + TRRWE
Sbjct: 129 SDPTARAVYDLSLSAAARCFYRRAAGYS----GGDYTTRRWE 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093380|ref|XP_002309904.1| predicted protein [Populus trichocarpa] gi|222852807|gb|EEE90354.1| predicted protein [Populus trichocarpa]

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 61/96 (63%), Gaps = 12/96 (12%)

Query: 11  SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG-------NSQDFIKIHNIYETLSDPT 63
           SLYE+L+V+   +++EIK  +RSLAKVYHPD+SG       +  DF++I N YETLSDP 
Sbjct: 46  SLYEILQVKRTASLTEIKGAFRSLAKVYHPDVSGSDGGEQLDGLDFVEICNAYETLSDPA 105

Query: 64  TRAVYDMSL-VSRRRTRTASFGCLGRSGFHPTRRWE 98
            RA+YD+SL  S  R R   F      G+   RRWE
Sbjct: 106 ARAMYDLSLGYSSSRKRPVRFS----GGYSLNRRWE 137

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
TAIR|locus:2088100	157	AT3G13310 [Arabidopsis thalian	0.794	0.541	0.565	4.9e-21
TAIR|locus:2827820	160	AT2G17880 "AT2G17880" [Arabido	0.813	0.543	0.440	1.1e-14
TAIR|locus:2135159	161	J11 "AT4G36040" [Arabidopsis t	0.794	0.527	0.421	1.5e-12
GENEDB_PFALCIPARUM|PF11_0099	540	PF11_0099 "heat shock protein	0.579	0.114	0.492	1.6e-09
UNIPROTKB|Q8IIR6	540	PF11_0099 "Heat shock protein	0.579	0.114	0.492	1.6e-09
TAIR|locus:2119465	197	J20 "AT4G13830" [Arabidopsis t	0.654	0.355	0.428	2.2e-09
FB|FBgn0032474	389	DnaJ-H "DnaJ homolog" [Drosoph	0.551	0.151	0.516	2.3e-09
ZFIN|ZDB-GENE-081021-2	199	dnajc5ab "DnaJ (Hsp40) homolog	0.579	0.311	0.454	5.9e-09
DICTYBASE|DDB_G0282313	363	DDB_G0282313 "heat shock prote	0.570	0.168	0.419	7.2e-09
DICTYBASE|DDB_G0292980	170	dph4 "diphthamide biosynthesis	0.299	0.188	0.5	9.1e-09

TAIR|locus:2088100 AT3G13310 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 52/92 (56%), Positives = 66/92 (71%)

Query:    11 SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS-GNSQDFIKIHNIYETLSDPTTRAVYD 69
             SLYE+L+V    +++EIKT YRSLAKVYHPD S  + +DF++IH  Y TL+DPTTRA+YD
Sbjct:    64 SLYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGRDFMEIHKAYATLADPTTRAIYD 123

Query:    70 MSL-VSRRRTRTASFGCLGRSG--FHPTRRWE 98
              +L V RRR      G +GRSG  +  TRRWE
Sbjct:   124 STLRVPRRRVHA---GAMGRSGRVYATTRRWE 152

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2827820 AT2G17880 "AT2G17880" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 41/93 (44%), Positives = 55/93 (59%)

Query:    11 SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD------FIKIHNIYETLSDPTT 64
             SLYE+L +   +T  EIK+ YR LA++ HPD++ NS+D      F+KIH  Y TLSDP  
Sbjct:    68 SLYEILEIPVGSTSQEIKSAYRRLARICHPDVARNSRDNSSADDFMKIHAAYCTLSDPEK 127

Query:    65 RAVYDMSLVSRRRTRTASFGCLGRSGFHPTRRW 97
             RAVYD   + R R  TA +G  G   +   + W
Sbjct:   128 RAVYDRRTLLRSRPLTAGYGSYGGRNWETDQCW 160

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2135159 J11 "AT4G36040" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 40/95 (42%), Positives = 57/95 (60%)

Query:    11 SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG-------NSQDFIKIHNIYETLSDPT 63
             SLY+VL V    T  +IK+ YR LA++ HPD++G       ++ +F+KIH  Y TLSDP 
Sbjct:    65 SLYDVLEVPLGATSQDIKSAYRRLARICHPDVAGTDRTSSSSADEFMKIHAAYCTLSDPE 124

Query:    64 TRAVYDMSLVSRRRTRTASFGCLGRSGFHPTRRWE 98
              R+VYD  ++  RR+R  + G  G  G +  R WE
Sbjct:   125 KRSVYDRRML--RRSRPLTVGTSGL-GSYVGRNWE 156

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GENEDB_PFALCIPARUM|PF11_0099 PF11_0099 "heat shock protein DnaJ homologue Pfj2" [Plasmodium falciparum (taxid:5833)]

 Score = 148 (57.2 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 31/63 (49%), Positives = 40/63 (63%)

Query:     9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQ-DFIKIHNIYETLSDPTTRAV 67
             G   Y+ L V+   T  +I   YR LAK YHPD++ + + DFI+I N YETLSDP  R +
Sbjct:    33 GMDYYKRLGVKRNATKEDISKAYRQLAKEYHPDIAPDKEKDFIEIANAYETLSDPEKRKM 92

Query:    68 YDM 70
             YDM
Sbjct:    93 YDM 95

GO:0009408 "response to heat" evidence=ISS

GO:0020011 "apicoplast" evidence=ISS

UNIPROTKB|Q8IIR6 PF11_0099 "Heat shock protein DnaJ homologue Pfj2" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 148 (57.2 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 31/63 (49%), Positives = 40/63 (63%)

Query:     9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQ-DFIKIHNIYETLSDPTTRAV 67
             G   Y+ L V+   T  +I   YR LAK YHPD++ + + DFI+I N YETLSDP  R +
Sbjct:    33 GMDYYKRLGVKRNATKEDISKAYRQLAKEYHPDIAPDKEKDFIEIANAYETLSDPEKRKM 92

Query:    68 YDM 70
             YDM
Sbjct:    93 YDM 95

GO:0009408 "response to heat" evidence=ISS

GO:0020011 "apicoplast" evidence=ISS

TAIR|locus:2119465 J20 "AT4G13830" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 33/77 (42%), Positives = 43/77 (55%)

Query:     2 PVMAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQ-----D-FIKIHNI 55
             PV  Q    S Y++L V    T+ EIK  Y+ LA+ YHPD+S   +     D FI++   
Sbjct:    58 PVK-QSEDLSFYDLLGVTESVTLPEIKQAYKQLARKYHPDVSPPDRVEEYTDRFIRVQEA 116

Query:    56 YETLSDPTTRAVYDMSL 72
             YETLSDP  R +YD  L
Sbjct:   117 YETLSDPRRRVLYDRDL 133

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

FB|FBgn0032474 DnaJ-H "DnaJ homolog" [Drosophila melanogaster (taxid:7227)]

 Score = 144 (55.7 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 31/60 (51%), Positives = 39/60 (65%)

Query:    11 SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD-FIKIHNIYETLSDPTTRAVYD 69
             +LY+VLRV P  T  EIK  YR LAK +HPD + ++ D F +I   YE LSDP  R +YD
Sbjct:     5 NLYDVLRVAPDATDEEIKKNYRKLAKEFHPDKNPDAGDKFKEISFAYEVLSDPEKRRIYD 64

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

ZFIN|ZDB-GENE-081021-2 dnajc5ab "DnaJ (Hsp40) homolog, subfamily C, member 5ab" [Danio rerio (taxid:7955)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 30/66 (45%), Positives = 41/66 (62%)

Query:     8 TGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPT 63
             +G SLY VL VE  T   +IK +YR LA  +HPD + N+ +    F +I+N +  LSDPT
Sbjct:    13 SGESLYVVLGVEKNTAQEDIKKSYRKLALKFHPDKNPNNPEAADKFKEINNAHAILSDPT 72

Query:    64 TRAVYD 69
              R +YD
Sbjct:    73 KRNIYD 78

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0282313 DDB_G0282313 "heat shock protein DnaJ family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 139 (54.0 bits), Expect = 7.2e-09, P = 7.2e-09
 Identities = 26/62 (41%), Positives = 43/62 (69%)

Query:     9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD-FIKIHNIYETLSDPTTRAV 67
             GR  Y++L +   ++ ++IK +YR L+  YHPD + + +D +I+I++ YETLSDP  R +
Sbjct:    23 GRDFYDILGITRDSSPADIKRSYRKLSVKYHPDKNPDKKDMYIEINSAYETLSDPEKRRI 82

Query:    68 YD 69
             YD
Sbjct:    83 YD 84

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0292980 dph4 "diphthamide biosynthesis protein 4" [Dictyostelium discoideum (taxid:44689)]

 Score = 85 (35.0 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query:    10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPD 41
             ++ YE+L+V     I EIK +YR LA +YHPD
Sbjct:    14 KNYYEILKVSIDADIEEIKKSYRKLALLYHPD 45

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	107
pfam00226	63	pfam00226, DnaJ, DnaJ domain	7e-18
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	2e-15
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	5e-14
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	2e-13
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	2e-13
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	4e-13
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	1e-12
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	1e-12
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	3e-12
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	1e-11
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	9e-11
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	2e-10
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	3e-10
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	3e-10
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	4e-10
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	4e-10
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	8e-10
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	1e-09
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	2e-09
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	2e-09
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	2e-09
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	2e-09
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	4e-09
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	5e-09
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	5e-09
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	1e-08
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	2e-08
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	3e-08
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	3e-08
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	6e-08
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	9e-08
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	1e-07
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	1e-07
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	1e-07
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	3e-07
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	1e-05
TIGR00714	155	TIGR00714, hscB, Fe-S protein assembly co-chaperon	1e-04
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	0.001

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 70.6 bits (174), Expect = 7e-18
 Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 12 LYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTRAV 67
           YE+L V    +  EIK  YR LA  YHPD +         F +I+  YE LSDP  RA+
Sbjct: 2  YYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRAI 61

Query: 68 YD 69
          YD
Sbjct: 62 YD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTR 65
          R  YE+L V    +  EIK  YR LAK YHPD +   ++    F +I+  YE LSDP  R
Sbjct: 4  RDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKR 63

Query: 66 AVYDM 70
          A YD 
Sbjct: 64 AAYDQ 68

Length = 371

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 60.7 bits (148), Expect = 5e-14
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD-----FIKIHNIYETLSDPT 63
             YE+L V    ++ EIK  YR LA  YHPD +   ++     F +I+  YE LSDP 
Sbjct: 1  TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59

Length = 60

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 64.4 bits (157), Expect = 2e-13
 Identities = 34/70 (48%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 4  MAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS-GNS---QDFIKIHNIYETL 59
          MA    +  YE+L V+   T  EIK  YR LAK YHPDL+ G+    Q F +I+  YE L
Sbjct: 1  MAAK--KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEIL 58

Query: 60 SDPTTRAVYD 69
          SDP  RA YD
Sbjct: 59 SDPQKRAQYD 68

Length = 386

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 64.1 bits (156), Expect = 2e-13
 Identities = 29/58 (50%), Positives = 35/58 (60%)

Query: 12 LYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYD 69
          LYEVL +    T SEIK  YR LA  +HPD  G+ + F +I   YE LSDP  R +YD
Sbjct: 30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYD 87

Length = 421

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 63.2 bits (154), Expect = 4e-13
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 4  MAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLS 60
          M        Y+ L V    +  EIK  YR L+K YHPD++   G  + + ++   YETLS
Sbjct: 1  MNN---TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLS 57

Query: 61 DPTTRAVYD 69
          DP  RA YD
Sbjct: 58 DPQKRAAYD 66

Length = 380

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 28/61 (45%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLSDPTTRAVYD 69
          YE+L V    +  EIK  YR LAK YHPD +      + F +I+  YE LSDP  RA YD
Sbjct: 3  YEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYD 62

Query: 70 M 70
           
Sbjct: 63 Q 63

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 61.7 bits (150), Expect = 1e-12
 Identities = 29/63 (46%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLSDPTTRA 66
          R  YEVL V    +  EIK  YR L+K YHPD++   G  + F +I   YE LSD   RA
Sbjct: 4  RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRA 63

Query: 67 VYD 69
           YD
Sbjct: 64 QYD 66

Length = 376

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 56.0 bits (136), Expect = 3e-12
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS----QDFIKIHNIYETLSD 61
          Y++L V P  +  EIK  YR LA  YHPD + +     + F +I+  YE LSD
Sbjct: 3  YDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 59.0 bits (143), Expect = 1e-11
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRA 66
          +  YE+L V    T  EIK  YR LA+ YHPD + N    + F +I+  Y+ LSDP  R 
Sbjct: 3  KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRK 62

Query: 67 VYDM 70
          +YD 
Sbjct: 63 LYDQ 66

Length = 382

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 56.5 bits (137), Expect = 9e-11
 Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLSDPTTRA 66
             YE+L V       E+K  YR LA+ YHPD++   G    F +I+  YE LSDP TRA
Sbjct: 3  ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRA 62

Query: 67 VYD 69
           YD
Sbjct: 63 RYD 65

Length = 374

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 55.5 bits (135), Expect = 2e-10
 Identities = 31/70 (44%), Positives = 37/70 (52%), Gaps = 7/70 (10%)

Query: 4  MAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETL 59
          MA+   R  YEVL V    +  EIK  YR LA  YHPD +   ++    F +I   YE L
Sbjct: 1  MAK---RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVL 57

Query: 60 SDPTTRAVYD 69
          SDP  RA YD
Sbjct: 58 SDPQKRAAYD 67

Length = 371

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS---QDFIKIHNIYETLSDPTTRAVYD 69
          Y ++ V+P   +  IKT YR LA+ YHPD+S        F ++   +E LSD   RA YD
Sbjct: 7  YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYD 66

Length = 306

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 55.0 bits (132), Expect = 3e-10
 Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 3/63 (4%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG--NSQD-FIKIHNIYETLSDPTTRA 66
          R  YEVL V+   ++ E+K  YR LA+ YHPD++   +++D F ++   Y+TLSDP  +A
Sbjct: 4  RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKA 63

Query: 67 VYD 69
           YD
Sbjct: 64 HYD 66

Length = 371

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 54.6 bits (131), Expect = 4e-10
 Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 13/85 (15%)

Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLS-GNSQD----FIKIHNIYETLSDPTTRAV 67
          Y++L V+   +  +IK  +R LAK +HPDL  GN  +    F +I   YE LSDP  R  
Sbjct: 6  YKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQ 65

Query: 68 YDMSLVSRRRTRTASFGCLGRSGFH 92
          YD       +T T  FG  G S F+
Sbjct: 66 YD-------QTGTVDFGAGG-SNFN 82

Length = 365

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 54.7 bits (132), Expect = 4e-10
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQ---DFIKIHNIYETLSDPTTRA 66
          R  Y +L V    + +EIK  YR LA+  HPD++ + +    F +I   YE LSDP  R 
Sbjct: 3  RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRR 62

Query: 67 VYDM 70
          + D+
Sbjct: 63 IVDL 66

Length = 378

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 53.7 bits (129), Expect = 8e-10
 Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 8  TGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLSDPTT 64
          T R  YE+L +    ++ +IK  YR LA  YHPD +      + F +I   Y  LSD   
Sbjct: 3  TTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEK 62

Query: 65 RAVYD 69
          RA YD
Sbjct: 63 RAQYD 67

Length = 377

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 53.7 bits (128), Expect = 1e-09
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRA 66
          R  YEVL ++      EIK  +R LAK YHPD +     +  F +I+   + LS+P  RA
Sbjct: 2  RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRA 61

Query: 67 VYD 69
           YD
Sbjct: 62 NYD 64

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 52.9 bits (127), Expect = 2e-09
 Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTR 65
          R  YEVL V    T+ EIK  YR  A  YHPD +   ++    F +    Y+ LSDP  R
Sbjct: 5  RDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKR 64

Query: 66 AVYD 69
          + YD
Sbjct: 65 SRYD 68

Length = 386

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDL---SGNSQDFIKIHNIYETLSDPTTRA 66
          +  YEVL V    +  EI+  YR LAK YHPDL          ++I+   + L D   R 
Sbjct: 4  KDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRK 63

Query: 67 VYD 69
           YD
Sbjct: 64 QYD 66

Length = 372

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 33/85 (38%), Positives = 38/85 (44%), Gaps = 15/85 (17%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLSDPTTRA 66
          R  YEVL V+      EIK  YR LA+ YHPD+S   G  + F +I   Y  LSD   R 
Sbjct: 5  RDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQ 64

Query: 67 VYDMSLVSRRRTRTASFGCLGRSGF 91
           YD             FG  G  GF
Sbjct: 65 RYD------------QFGHAGMDGF 77

Length = 378

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLSDPTTRAVYD 69
          YE+L V    +  EIK+ YR LA  YHPD +   G ++ F +I+  Y  LSD   RA YD
Sbjct: 5  YELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYD 64

Length = 371

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 51.7 bits (124), Expect = 4e-09
 Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 17/95 (17%)

Query: 4  MAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETL 59
          MA    +  YEVL +E   +  EIK  +R LA  YHPD +  +++    F +I+  Y+ L
Sbjct: 1  MAS---KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVL 57

Query: 60 SDPTTRAVYDMSLVSRRRTRTASF---GCLGRSGF 91
          SDP  +A YD       +  TA F   G  G  GF
Sbjct: 58 SDPQKKAQYD-------QFGTADFNGAGGFGSGGF 85

Length = 380

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 51.4 bits (122), Expect = 5e-09
 Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHN-IYETLSDPTT 64
             YE+L V P  ++ EIK  YR LA  YHPD +      +++  K  N  YE LSDP  
Sbjct: 6  LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPER 65

Query: 65 RAVYDMSLVSRRRTRTASF 83
          RA YD           +  
Sbjct: 66 RAEYDKIGADNYFPGKSYR 84

Length = 237

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 51.4 bits (123), Expect = 5e-09
 Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD------FIKIHNIYETLSDPTTRA 66
          Y +L V    +  EIK  YR LA  YHPD   N  D      F ++   YE LSD   R 
Sbjct: 4  YTILGVSKTASPEEIKKAYRKLAVKYHPD--KNPGDAEAEKRFKEVSEAYEVLSDAQKRE 61

Query: 67 VYD 69
           YD
Sbjct: 62 SYD 64

Length = 391

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLS-GN----SQDFIKIHNIYETLSDPTTRAV 67
          YE+L V    T  EIK  Y+ L K +HPD    N     Q F +I   YE LSDP  RA+
Sbjct: 7  YEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAM 66

Query: 68 YD 69
          YD
Sbjct: 67 YD 68

Length = 369

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 50.0 bits (119), Expect = 2e-08
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTRAVY 68
          Y++L V    + +++K  Y  LAK YHPD + +++D    F +I+  Y+ L D   RA Y
Sbjct: 6  YQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVLKDEQKRAAY 64

Query: 69 DMSLVSRRRTRTASFGCLGRSGFHP 93
          D       + + +  G     GFHP
Sbjct: 65 DRFGHDAFQNQQSRGGGGNHGGFHP 89

Length = 372

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTR 65
          R  YEVL V       EIK  YR LA  YHPD + ++++    F +++  YE LS+   R
Sbjct: 3  RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKR 62

Query: 66 AVYD 69
            YD
Sbjct: 63 RRYD 66

Length = 397

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTR 65
          R  YE+L V    +  EIK +YR LA  YHPD +   ++    F +    YE LSDP  R
Sbjct: 4  RDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKR 63

Query: 66 AVYD 69
           +YD
Sbjct: 64 GIYD 67

Length = 366

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 48.3 bits (115), Expect = 6e-08
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLS-GNSQ---DFIKIHNIYETLSDPTTRAVY 68
          Y+VL V    T +EIK  YR LA+ YHPD + G+++    F +I   Y+ LSD   R  Y
Sbjct: 12 YKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEY 71

Query: 69 D 69
          D
Sbjct: 72 D 72

Length = 389

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 48.1 bits (114), Expect = 9e-08
 Identities = 27/64 (42%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS-GN---SQDFIKIHNIYETLSDPTTR 65
          RS Y++L V       EIK+ YR LA  YHPD + GN    + F +    YE L DP  R
Sbjct: 4  RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKR 63

Query: 66 AVYD 69
            YD
Sbjct: 64 QAYD 67

Length = 372

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 47.8 bits (113), Expect = 1e-07
 Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 11 SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTRA 66
          S YE+L VE  +    IK +YR LA  YHPD +   ++    F  I+  Y  LSD   RA
Sbjct: 4  SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRA 63

Query: 67 VYD 69
          +YD
Sbjct: 64 LYD 66

Length = 369

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLSDPTTRAVYD 69
          Y +L V    +  EIK  ++ LA+ YHPD++   G  + F +I+  Y  LSDP  R +YD
Sbjct: 7  YAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYD 66

Length = 291

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTR 65
          R  YEVL V    +  EIK  YR LA  YHPD + ++ +    F +    YE L D   R
Sbjct: 4  RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKR 63

Query: 66 AVYD 69
          A YD
Sbjct: 64 ARYD 67

Length = 373

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 46.5 bits (110), Expect = 3e-07
 Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTR 65
          R  YE+L +    +  EIK  YR +A  YHPD +  +++    F +    YE L D   R
Sbjct: 3  RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKR 62

Query: 66 AVYDMSLVSRRRTRTASFGCLGRSGF 91
          A YD      R   TA  G  G  GF
Sbjct: 63 AQYD------RFGHTAFEGGGGFEGF 82

Length = 365

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLS-GNS---QDFIKIHNIYETLSDPTTRAVY 68
          Y+ L V    +  EIK  YR LA+  HPD + G+    + F  +   ++ LSDP  R  Y
Sbjct: 12 YKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEY 71

Query: 69 D 69
          D
Sbjct: 72 D 72

Length = 392

>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)

Query: 31 YRSLAKVYHPDLSGNSQDFI-------KIHNIYETLSDPTTRAVYDMSL 72
          YR L   YHPD SG +Q+ +        ++  Y TL DP  RA Y + L
Sbjct: 12 YRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEYMLKL 60

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock [Protein fate, Protein folding and stabilization]. Length = 155

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 13  YEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---------SQDFIKIHNIYETLSDPT 63
           YE+L ++  T+  +IK  YR L+  +HPD +            + +  I   Y  L+D  
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160

Query: 64  TRAVY 68
            R  Y
Sbjct: 161 RRENY 165

Length = 610

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	107
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.93
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.91
PRK14288	369	chaperone protein DnaJ; Provisional	99.87
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.86
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.86
PRK14296	372	chaperone protein DnaJ; Provisional	99.85
PRK14279	392	chaperone protein DnaJ; Provisional	99.84
PRK14286	372	chaperone protein DnaJ; Provisional	99.84
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.83
PRK14287	371	chaperone protein DnaJ; Provisional	99.82
PRK14282	369	chaperone protein DnaJ; Provisional	99.82
PRK14285	365	chaperone protein DnaJ; Provisional	99.82
PRK14283	378	chaperone protein DnaJ; Provisional	99.82
PRK14298	377	chaperone protein DnaJ; Provisional	99.82
PRK14291	382	chaperone protein DnaJ; Provisional	99.82
PRK14276	380	chaperone protein DnaJ; Provisional	99.82
PRK14299	291	chaperone protein DnaJ; Provisional	99.81
PRK14277	386	chaperone protein DnaJ; Provisional	99.81
PRK14294	366	chaperone protein DnaJ; Provisional	99.81
PRK14295	389	chaperone protein DnaJ; Provisional	99.81
PRK14280	376	chaperone protein DnaJ; Provisional	99.81
PRK14278	378	chaperone protein DnaJ; Provisional	99.8
PRK14301	373	chaperone protein DnaJ; Provisional	99.8
PRK14284	391	chaperone protein DnaJ; Provisional	99.8
PRK14297	380	chaperone protein DnaJ; Provisional	99.8
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.8
PRK14281	397	chaperone protein DnaJ; Provisional	99.79
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.79
PRK10767	371	chaperone protein DnaJ; Provisional	99.79
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.78
PRK14290	365	chaperone protein DnaJ; Provisional	99.78
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.78
PRK14300	372	chaperone protein DnaJ; Provisional	99.77
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.77
PRK14289	386	chaperone protein DnaJ; Provisional	99.77
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.77
PRK14292	371	chaperone protein DnaJ; Provisional	99.77
PRK14293	374	chaperone protein DnaJ; Provisional	99.77
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.77
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.76
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.75
PHA03102	153	Small T antigen; Reviewed	99.75
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.74
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.72
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.69
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.69
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.67
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.67
PRK01356	166	hscB co-chaperone HscB; Provisional	99.65
PRK05014	171	hscB co-chaperone HscB; Provisional	99.65
PRK03578	176	hscB co-chaperone HscB; Provisional	99.64
PRK00294	173	hscB co-chaperone HscB; Provisional	99.6
PTZ00100	116	DnaJ chaperone protein; Provisional	99.57
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.55
PHA02624	647	large T antigen; Provisional	99.55
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.54
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.45
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.41
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.41
PRK01773	173	hscB co-chaperone HscB; Provisional	99.4
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.26
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	99.26
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.22
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	99.08
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.84
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.71
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.42
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	98.19
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.24
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.12
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	97.05
KOG0431	453	consensus Auxilin-like protein and related protein	96.58
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	93.7
PF13446	62	RPT: A repeated domain in UCH-protein	92.68
KOG0724	335	consensus Zuotin and related molecular chaperones	90.91
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	90.16
KOG3442	132	consensus Uncharacterized conserved protein [Funct	84.13

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.3e-26  Score=175.89  Aligned_cols=69  Identities=42%  Similarity=0.623  Sum_probs=64.4

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC----ChHHHHHHHHHHHHcCCchhHHHHHHHhhhhcc
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG----NSQDFIKIHNIYETLSDPTTRAVYDMSLVSRRR   77 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~----~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   77 (107)
                      .+|||+||||+++|+.+|||+|||+|+++||||+++    +.++|++|++||+||+||++|+.||+++.....
T Consensus         3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~   75 (371)
T COG0484           3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK   75 (371)
T ss_pred             ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence            589999999999999999999999999999999997    346999999999999999999999999987654

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2.7e-24  Score=160.58  Aligned_cols=70  Identities=40%  Similarity=0.619  Sum_probs=64.5

Q ss_pred             CccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHHHcCCchhHHHHHHHhhhhcc
Q 044278            8 TGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS----QDFIKIHNIYETLSDPTTRAVYDMSLVSRRR   77 (107)
Q Consensus         8 ~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~----~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   77 (107)
                      ..+|||+||||+++|+..+||+|||+|++++|||+|+++    +.|+.|+.||+||+||.+|+.||..|...-.
T Consensus        14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~   87 (336)
T KOG0713|consen   14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLK   87 (336)
T ss_pred             cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhc
Confidence            468999999999999999999999999999999999765    4899999999999999999999999965443

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=2.3e-22  Score=153.67  Aligned_cols=66  Identities=39%  Similarity=0.568  Sum_probs=61.4

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC----ChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG----NSQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~----~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||+++    +.++|++|++||+||+||.+|..||.++..
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~   71 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK   71 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence            479999999999999999999999999999999986    346899999999999999999999998754

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.86  E-value=4.2e-22  Score=154.36  Aligned_cols=66  Identities=44%  Similarity=0.645  Sum_probs=63.3

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      .+|||+||||+++|+.++||+|||+|+++||||++++.++|++|++||+||+||.+|+.||.++..
T Consensus        27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~~G~~   92 (421)
T PTZ00037         27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDEYGEE   92 (421)
T ss_pred             chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhhhcch
Confidence            579999999999999999999999999999999998889999999999999999999999998754

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1e-21  Score=147.72  Aligned_cols=68  Identities=40%  Similarity=0.647  Sum_probs=63.6

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-HHHHHHHHHHHHcCCchhHHHHHHHhhhhc
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS-QDFIKIHNIYETLSDPTTRAVYDMSLVSRR   76 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   76 (107)
                      ...+|+||||+++|+.+|||+|||+|+++||||++++. ++|++|++||+||+||.+|..||+++...-
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~   71 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGL   71 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence            56899999999999999999999999999999999765 699999999999999999999999996644

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.2e-21  Score=149.94  Aligned_cols=66  Identities=35%  Similarity=0.548  Sum_probs=61.4

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      .+|||+||||+++|+.++||+|||+|+++||||+++   +.++|++|++||+||+||.+|+.||.++..
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~   71 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHA   71 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence            479999999999999999999999999999999984   346899999999999999999999998754

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=2.1e-21  Score=149.32  Aligned_cols=65  Identities=32%  Similarity=0.535  Sum_probs=60.9

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLV   73 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   73 (107)
                      .+|||+||||+++|+.++||+|||+|+++||||+++.    .++|++|++||+||+||.+|+.||.++.
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~   76 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR   76 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence            5799999999999999999999999999999999863    4689999999999999999999999874

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=4.9e-21  Score=146.50  Aligned_cols=66  Identities=38%  Similarity=0.591  Sum_probs=61.2

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.    .++|++|++||+||+||.+|+.||.++..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   72 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKA   72 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCch
Confidence            4799999999999999999999999999999999853    46999999999999999999999998754

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.83  E-value=1.1e-20  Score=111.22  Aligned_cols=59  Identities=44%  Similarity=0.774  Sum_probs=55.4

Q ss_pred             CccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-h----HHHHHHHHHHHHcCCchhHHHHH
Q 044278           11 SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-S----QDFIKIHNIYETLSDPTTRAVYD   69 (107)
Q Consensus        11 ~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-~----~~f~~i~~Ay~~L~d~~~R~~Yd   69 (107)
                      |||+||||+++++.++|+++|+++++.+|||+++. .    +.|..|++||++|++|.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            68999999999999999999999999999999743 3    58999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.4e-20  Score=143.91  Aligned_cols=66  Identities=39%  Similarity=0.700  Sum_probs=61.1

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.   .++|++|++||++|+||.+|+.||.++..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~   71 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT   71 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence            4699999999999999999999999999999999853   45899999999999999999999998754

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.5e-20  Score=143.67  Aligned_cols=66  Identities=41%  Similarity=0.620  Sum_probs=61.1

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-----SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.     .++|++|++||++|+||.+|+.||.++..
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~   73 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV   73 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence            4799999999999999999999999999999999853     35899999999999999999999998754

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.8e-20  Score=143.09  Aligned_cols=65  Identities=35%  Similarity=0.511  Sum_probs=60.6

Q ss_pred             cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278           10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus        10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      +|||+||||+++|+.++||+|||+|+++||||+++.    .++|++|++||++|+||.+|..||.++..
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~   71 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT   71 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence            699999999999999999999999999999999853    35899999999999999999999998754

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=2.3e-20  Score=142.95  Aligned_cols=66  Identities=41%  Similarity=0.608  Sum_probs=61.4

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||+++   +.++|++|++||++|+||.+|..||.++..
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~   72 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHA   72 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccc
Confidence            579999999999999999999999999999999985   456999999999999999999999998753

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.8e-20  Score=143.55  Aligned_cols=66  Identities=36%  Similarity=0.588  Sum_probs=61.1

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      .+|||+||||+++|+.++||+|||+|+++||||++++   .++|++|++||++|+||.+|+.||+++..
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   72 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA   72 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence            4799999999999999999999999999999999853   46899999999999999999999998753

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=2.6e-20  Score=142.92  Aligned_cols=66  Identities=41%  Similarity=0.686  Sum_probs=61.4

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      .+|||+||||+++|+.++||+|||+|+++||||++++   .++|++|++||++|+||.+|..||.++..
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~   70 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA   70 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence            4799999999999999999999999999999999853   56899999999999999999999998764

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=2.3e-20  Score=143.05  Aligned_cols=66  Identities=38%  Similarity=0.651  Sum_probs=61.3

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||+++   +.++|++|++||++|+||.+|+.||.++..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   71 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA   71 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence            479999999999999999999999999999999985   356899999999999999999999998754

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=2.5e-20  Score=138.54  Aligned_cols=66  Identities=33%  Similarity=0.625  Sum_probs=61.3

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||++++   .++|+.|++||++|+||.+|..||.++..
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~   71 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT   71 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence            4799999999999999999999999999999999853   46899999999999999999999998764

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=3.3e-20  Score=142.51  Aligned_cols=66  Identities=47%  Similarity=0.697  Sum_probs=61.0

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.    .++|++|++||+||+||.+|..||.++..
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~   73 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHA   73 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence            3799999999999999999999999999999999863    35899999999999999999999998754

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=3.9e-20  Score=141.20  Aligned_cols=66  Identities=39%  Similarity=0.590  Sum_probs=61.4

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      .+|||+||||+++|+.++||+|||+|+++||||+++.    .+.|+.|++||+||+||.+|..||.++..
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~   72 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHE   72 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence            4799999999999999999999999999999999863    36899999999999999999999998854

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=4.4e-20  Score=141.94  Aligned_cols=62  Identities=40%  Similarity=0.649  Sum_probs=58.4

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHH
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDM   70 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~   70 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.    .++|++|++||+||+||.+|..||.
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~   73 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE   73 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence            4699999999999999999999999999999999853    4699999999999999999999998

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=5.1e-20  Score=141.04  Aligned_cols=66  Identities=42%  Similarity=0.639  Sum_probs=61.3

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||+++   +.++|++|++||+||+||.+|..||.++..
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~   71 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHA   71 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence            379999999999999999999999999999999984   356999999999999999999999998754

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=5.1e-20  Score=141.15  Aligned_cols=65  Identities=37%  Similarity=0.594  Sum_probs=60.5

Q ss_pred             cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278           10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus        10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      +|||+||||+++|+.++||+|||+|+++||||++++   .++|++|++||+||+||.+|..||.++..
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~   70 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP   70 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence            699999999999999999999999999999999864   35899999999999999999999998753

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=5.1e-20  Score=140.95  Aligned_cols=66  Identities=41%  Similarity=0.556  Sum_probs=61.1

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.    .++|++|++||+||+||.+|..||.++..
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~   72 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA   72 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence            4799999999999999999999999999999999853    35899999999999999999999998754

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=6.6e-20  Score=141.03  Aligned_cols=65  Identities=35%  Similarity=0.543  Sum_probs=60.4

Q ss_pred             cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278           10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus        10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      .|||+||||+++|+.++||+|||+|+++||||+++.    .++|++|++||++|+||.+|+.||+++..
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   69 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD   69 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence            389999999999999999999999999999999863    45899999999999999999999998754

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=5e-20  Score=141.21  Aligned_cols=66  Identities=38%  Similarity=0.610  Sum_probs=61.0

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.    .++|++|++||++|+||.+|..||.++..
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~   72 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTA   72 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence            3799999999999999999999999999999999853    35899999999999999999999998754

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=7.1e-20  Score=133.55  Aligned_cols=66  Identities=44%  Similarity=0.656  Sum_probs=61.4

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS----QDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~----~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ..++|+||||+++|+.++||++||+|++++|||++++.    .+|++||+||+||+||.+|..||.++.-
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~   99 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGEL   99 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhH
Confidence            46799999999999999999999999999999999663    5899999999999999999999999755

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1e-19  Score=140.28  Aligned_cols=65  Identities=38%  Similarity=0.580  Sum_probs=60.8

Q ss_pred             cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278           10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus        10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      .|||+||||+++|+.++||+|||+|+++||||+++.    .++|++|++||++|+||.+|..||.++..
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~   71 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHA   71 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccch
Confidence            699999999999999999999999999999999863    36899999999999999999999998754

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.7e-19  Score=134.00  Aligned_cols=66  Identities=42%  Similarity=0.668  Sum_probs=61.9

Q ss_pred             cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhhhh
Q 044278           10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLVSR   75 (107)
Q Consensus        10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   75 (107)
                      .|||+||||+++|+..|||.||++|+++||||.+.   +.++|+.|.+||+||+|+.+|..||..+...
T Consensus        43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            39999999999999999999999999999999984   4568999999999999999999999999765

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.1e-19  Score=138.85  Aligned_cols=66  Identities=44%  Similarity=0.647  Sum_probs=61.0

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.    .++|++|++||++|+||.+|..||.++..
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~   72 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA   72 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence            4799999999999999999999999999999999853    35899999999999999999999998754

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=4.2e-19  Score=137.08  Aligned_cols=76  Identities=42%  Similarity=0.546  Sum_probs=66.7

Q ss_pred             CCCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchhHHHHHHHhhhhcccC
Q 044278            5 AQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-----SQDFIKIHNIYETLSDPTTRAVYDMSLVSRRRTR   79 (107)
Q Consensus         5 ~~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~   79 (107)
                      ++...+.||+||||.++|+..+||++||+|+++||||++++     .++|+.|+.||+|||||..|..||......-...
T Consensus         3 ~~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~   82 (508)
T KOG0717|consen    3 NPFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK   82 (508)
T ss_pred             CchhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence            45667899999999999999999999999999999999865     4589999999999999999999998887544333


Q ss_pred             C
Q 044278           80 T   80 (107)
Q Consensus        80 ~   80 (107)
                      .
T Consensus        83 ~   83 (508)
T KOG0717|consen   83 N   83 (508)
T ss_pred             C
Confidence            3

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=2.7e-19  Score=136.59  Aligned_cols=65  Identities=37%  Similarity=0.656  Sum_probs=60.4

Q ss_pred             cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278           10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-----SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus        10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      .|||+||||+++|+.++||+|||+|++++|||+++.     .++|+.|++||++|+||.+|..||.++..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~   72 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV   72 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence            699999999999999999999999999999999853     35899999999999999999999998753

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.78  E-value=3e-19  Score=135.67  Aligned_cols=64  Identities=44%  Similarity=0.655  Sum_probs=59.7

Q ss_pred             CccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278           11 SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus        11 ~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      |||+||||+++|+.++||+||++|+++||||+++   +.++|++|++||++|+|+.+|..||.++..
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~   67 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHA   67 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccc
Confidence            7999999999999999999999999999999985   346899999999999999999999998754

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=4e-19  Score=135.98  Aligned_cols=65  Identities=32%  Similarity=0.571  Sum_probs=60.5

Q ss_pred             cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278           10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus        10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      .|||+||||+++|+.++||+||++|+++||||+++   +.++|++|++||++|+|+.+|..||.++..
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~   70 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD   70 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence            69999999999999999999999999999999984   346999999999999999999999998753

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.77  E-value=5.2e-19  Score=132.25  Aligned_cols=64  Identities=38%  Similarity=0.664  Sum_probs=60.0

Q ss_pred             cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278           10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLV   73 (107)
Q Consensus        10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   73 (107)
                      +|||+||||++.++.++||+|||+|++++|||+++   +.++|++|++||++|+||.+|..||.++.
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            69999999999999999999999999999999984   45699999999999999999999999763

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=6.3e-19  Score=135.35  Aligned_cols=66  Identities=39%  Similarity=0.600  Sum_probs=61.1

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ..|||+||||+++|+.++|++|||+|+++||||+++.    .++|++|++||++|+||.+|..||.++..
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~   73 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA   73 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence            4799999999999999999999999999999999853    35899999999999999999999998753

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=8.7e-19  Score=130.34  Aligned_cols=70  Identities=34%  Similarity=0.520  Sum_probs=64.5

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHHHcCCchhHHHHHHHhhhhccc
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS----QDFIKIHNIYETLSDPTTRAVYDMSLVSRRRT   78 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~----~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   78 (107)
                      ..|||+||||+..++..+|++||+..+++||||+|+++    +.|+.|.+||+||+|+..|..||..+......
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~   77 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSA   77 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccc
Confidence            78999999999999999999999999999999999765    48999999999999999999999999775433

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=5.2e-19  Score=135.18  Aligned_cols=65  Identities=38%  Similarity=0.599  Sum_probs=60.6

Q ss_pred             cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278           10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus        10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      .|||+||||+++|+.++||+||++|++++|||+++.   .++|+.|++||++|+||.+|+.||.++..
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~   69 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA   69 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence            599999999999999999999999999999999953   46899999999999999999999998754

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=6.8e-19  Score=134.75  Aligned_cols=65  Identities=42%  Similarity=0.645  Sum_probs=60.6

Q ss_pred             cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278           10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus        10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      .|||+||||+++|+.++||+|||+|++++|||+++   +.++|+.|++||++|+||.+|+.||.++..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~   70 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEA   70 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence            69999999999999999999999999999999984   356999999999999999999999998753

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.77  E-value=9.8e-19  Score=101.42  Aligned_cols=54  Identities=43%  Similarity=0.713  Sum_probs=50.4

Q ss_pred             cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC-----ChHHHHHHHHHHHHcCCch
Q 044278           10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG-----NSQDFIKIHNIYETLSDPT   63 (107)
Q Consensus        10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~-----~~~~f~~i~~Ay~~L~d~~   63 (107)
                      +|||+||||+++++.++|+++|+++++.+|||+++     ..+.|..|++||++|++|.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            48999999999999999999999999999999997     3468999999999999985

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=8e-19  Score=135.82  Aligned_cols=69  Identities=36%  Similarity=0.579  Sum_probs=62.6

Q ss_pred             CCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHcCCchhHHHHHHHhhhh
Q 044278            7 GTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-------SQDFIKIHNIYETLSDPTTRAVYDMSLVSR   75 (107)
Q Consensus         7 ~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   75 (107)
                      ..+.+||.+|+|+++|+.++|++|||++++.+|||+..+       ++.|+.|+.||+||+||.+|..||.+|...
T Consensus         6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qG   81 (546)
T KOG0718|consen    6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQG   81 (546)
T ss_pred             cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcc
Confidence            345699999999999999999999999999999999843       347999999999999999999999999653

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.75  E-value=1.8e-18  Score=142.94  Aligned_cols=67  Identities=25%  Similarity=0.390  Sum_probs=62.2

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLVSR   75 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   75 (107)
                      ..+||+||||+++|+..+||+|||+|+++||||+++.   ..+|+.|++||+||+||.+|..||.+|...
T Consensus       572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G  641 (1136)
T PTZ00341        572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDG  641 (1136)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence            5899999999999999999999999999999999863   458999999999999999999999988653

>PHA03102 Small T antigen; Reviewed

Probab=99.75  E-value=1.1e-18  Score=119.09  Aligned_cols=69  Identities=12%  Similarity=0.283  Sum_probs=63.9

Q ss_pred             ccCccchhccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHHHHhhhhcc
Q 044278            9 GRSLYEVLRVEPMT--TISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMSLVSRRR   77 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   77 (107)
                      ...+|+||||+++|  |.++||+|||++++++|||+++++++|+.|++||++|+++.+|..||..+.....
T Consensus         4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~   74 (153)
T PHA03102          4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSS   74 (153)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhccccccCCcccc
Confidence            35689999999999  9999999999999999999999999999999999999999999999999866443

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.74  E-value=4.3e-18  Score=97.03  Aligned_cols=51  Identities=43%  Similarity=0.728  Sum_probs=48.0

Q ss_pred             CccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCC
Q 044278           11 SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSD   61 (107)
Q Consensus        11 ~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d   61 (107)
                      |||+||||+++++.++|+++|+++++++|||+++.    .+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            69999999999999999999999999999999974    5689999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=6.1e-18  Score=121.47  Aligned_cols=71  Identities=37%  Similarity=0.509  Sum_probs=63.7

Q ss_pred             CCCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC------ChHHHHHHHHHHHHcCCchhHHHHHHHhhhh
Q 044278            5 AQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG------NSQDFIKIHNIYETLSDPTTRAVYDMSLVSR   75 (107)
Q Consensus         5 ~~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~------~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   75 (107)
                      -....+++|+||||.++|+..+|++||++|++.+|||++.      +.+.|+.|+.||.||+|..+|+.||..|...
T Consensus         9 ~~f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id   85 (264)
T KOG0719|consen    9 GSFNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID   85 (264)
T ss_pred             ccccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence            3455779999999999999999999999999999999983      2348999999999999999999999988553

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=3.9e-17  Score=116.12  Aligned_cols=69  Identities=30%  Similarity=0.493  Sum_probs=62.8

Q ss_pred             CccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCC----CChHHHHHHHHHHHHcCCchhHHHHHHHhhhhc
Q 044278            8 TGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS----GNSQDFIKIHNIYETLSDPTTRAVYDMSLVSRR   76 (107)
Q Consensus         8 ~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~----~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   76 (107)
                      ...|+|+||||+++++..|||+|||+|++++|||++    ++.+.|..|.+||+.|+|+..|..|..+++...
T Consensus        97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG  169 (230)
T KOG0721|consen   97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG  169 (230)
T ss_pred             hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence            357999999999999999999999999999999996    345678999999999999999999999997644

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.69  E-value=4.1e-17  Score=123.73  Aligned_cols=69  Identities=35%  Similarity=0.528  Sum_probs=63.3

Q ss_pred             CCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCChH-------HHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            6 QGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQ-------DFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         6 ~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~-------~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      .+..+|||+||||.++|+..+|.+|||+++.+||||...+.+       +|..|-.|-+||+||.+|+.||.....
T Consensus       390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDP  465 (504)
T KOG0624|consen  390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDP  465 (504)
T ss_pred             HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCC
Confidence            457899999999999999999999999999999999986654       799999999999999999999987655

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=1.1e-16  Score=111.14  Aligned_cols=65  Identities=43%  Similarity=0.657  Sum_probs=60.1

Q ss_pred             CccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchhHHHHHHHh
Q 044278            8 TGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-----SQDFIKIHNIYETLSDPTTRAVYDMSL   72 (107)
Q Consensus         8 ~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   72 (107)
                      ...+||+||||+++|+..+|+++|+++++++|||+++.     .+.|+.|++||++|+|+..|..||..+
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            35799999999999999999999999999999999853     368999999999999999999999864

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.67  E-value=1.4e-16  Score=129.52  Aligned_cols=65  Identities=38%  Similarity=0.573  Sum_probs=60.3

Q ss_pred             cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278           10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus        10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      .|||+||||+++|+..+||++||+|++++|||+++.   ..+|+.|++||++|+||.+|..||.++..
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~a   69 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHD   69 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccc
Confidence            699999999999999999999999999999999854   34799999999999999999999998754

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.65  E-value=3.5e-16  Score=108.25  Aligned_cols=65  Identities=23%  Similarity=0.386  Sum_probs=57.7

Q ss_pred             cCccchhccCCC--CCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278           10 RSLYEVLRVEPM--TTISEIKTTYRSLAKVYHPDLSGNS-------QDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus        10 ~~~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~-------~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      .|||+||||++.  ++..+|+++|+++++++|||+....       +.+..|++||+||+||.+|..|+..+.+
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g   75 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQN   75 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccC
Confidence            589999999997  7899999999999999999998542       2477999999999999999999888743

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.65  E-value=2.9e-16  Score=109.12  Aligned_cols=65  Identities=26%  Similarity=0.458  Sum_probs=57.3

Q ss_pred             cCccchhccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278           10 RSLYEVLRVEPM--TTISEIKTTYRSLAKVYHPDLSGN---------SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus        10 ~~~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      .|||+||||++.  ++..+|+++|+++++++|||+...         .+.|..||+||++|+||.+|..|+..+.+
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g   76 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHG   76 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcC
Confidence            489999999996  688999999999999999999732         23689999999999999999999977653

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.64  E-value=6.6e-16  Score=107.78  Aligned_cols=68  Identities=22%  Similarity=0.341  Sum_probs=59.1

Q ss_pred             CCccCccchhccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            7 GTGRSLYEVLRVEPM--TTISEIKTTYRSLAKVYHPDLSGN---------SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         7 ~~~~~~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      +...|||+||||++.  ++..+|+++|++|++++|||++..         .+.+..||+||.+|++|.+|..|...+.+
T Consensus         3 ~~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G   81 (176)
T PRK03578          3 SLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRG   81 (176)
T ss_pred             CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcC
Confidence            456899999999986  688999999999999999999742         12468999999999999999999987754

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.60  E-value=2.9e-15  Score=104.28  Aligned_cols=67  Identities=25%  Similarity=0.482  Sum_probs=59.5

Q ss_pred             CccCccchhccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            8 TGRSLYEVLRVEPM--TTISEIKTTYRSLAKVYHPDLSGN---------SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         8 ~~~~~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ...|||++|||++.  .+..+|+++|+++++++|||+...         .+.+..||+||++|++|.+|..|+..+.+
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g   79 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSG   79 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence            36899999999998  578999999999999999999743         23689999999999999999999988754

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.57  E-value=3.8e-15  Score=97.40  Aligned_cols=52  Identities=21%  Similarity=0.351  Sum_probs=49.6

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcC
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLS   60 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~   60 (107)
                      ..++|+||||+++++.++|+++|++|++++|||++++...|++|++||++|.
T Consensus        64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~  115 (116)
T PTZ00100         64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999999988899999999999985

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=4.1e-15  Score=115.06  Aligned_cols=66  Identities=26%  Similarity=0.436  Sum_probs=62.4

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCC---CChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~---~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      .+|+|.||||+.+++.++||+.||+++..+||||+   .+++.|+.|+.||++|+|+.+|..||..+..
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k  302 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK  302 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence            68999999999999999999999999999999999   4677999999999999999999999988765

>PHA02624 large T antigen; Provisional

Probab=99.55  E-value=4e-15  Score=119.29  Aligned_cols=66  Identities=18%  Similarity=0.447  Sum_probs=62.7

Q ss_pred             CCCCCCccCccchhccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHH
Q 044278            3 VMAQGTGRSLYEVLRVEPMT--TISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVY   68 (107)
Q Consensus         3 ~~~~~~~~~~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Y   68 (107)
                      +|+.....++|+||||+++|  +.++||+|||++++++|||++++.++|+.|++||++|+|+.+|..|
T Consensus         4 ~Ltree~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624          4 TLSREESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             hhchHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence            46677788999999999999  9999999999999999999999999999999999999999999998

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=4e-15  Score=108.50  Aligned_cols=69  Identities=38%  Similarity=0.549  Sum_probs=62.9

Q ss_pred             CccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHHHcCCchhHHHHHHHhhhhc
Q 044278            8 TGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS---QDFIKIHNIYETLSDPTTRAVYDMSLVSRR   76 (107)
Q Consensus         8 ~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~---~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   76 (107)
                      +..|||+||||.+.++..+|.+|||+|++++|||++.+.   +.|..|-.||++|.|...|..||-.+....
T Consensus        31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhpd  102 (329)
T KOG0722|consen   31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDHPD  102 (329)
T ss_pred             cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcCch
Confidence            578999999999999999999999999999999998543   489999999999999999999998886644

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=6.4e-14  Score=107.84  Aligned_cols=71  Identities=31%  Similarity=0.501  Sum_probs=63.4

Q ss_pred             CCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHcCCchhHHHHHHHhhhhc
Q 044278            6 QGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS-----QDFIKIHNIYETLSDPTTRAVYDMSLVSRR   76 (107)
Q Consensus         6 ~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-----~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   76 (107)
                      .+..++||.||||.+.++..+|+++|+++++.+|||++...     .+|++|-+||.||+||.+|..||.......
T Consensus       369 kSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle~  444 (486)
T KOG0550|consen  369 KSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLEE  444 (486)
T ss_pred             HhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccchhh
Confidence            34578999999999999999999999999999999998544     379999999999999999999997765533

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=2.9e-13  Score=98.02  Aligned_cols=65  Identities=37%  Similarity=0.647  Sum_probs=59.8

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS-----QDFIKIHNIYETLSDPTTRAVYDMSLV   73 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-----~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   73 (107)
                      ..++|+||+|.+.|+..+|++||+++++++|||+++..     .+|.+|.+||++|+|+.+|..||.++.
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            46999999999999999999999999999999997544     369999999999999999999999997

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.41  E-value=2.8e-13  Score=99.91  Aligned_cols=54  Identities=31%  Similarity=0.383  Sum_probs=48.2

Q ss_pred             CccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC-----------ChHHHHHHHHHHHHcCC
Q 044278            8 TGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG-----------NSQDFIKIHNIYETLSD   61 (107)
Q Consensus         8 ~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~-----------~~~~f~~i~~Ay~~L~d   61 (107)
                      ...++|+||||++++|.++||++||+|+++||||+..           +.++|+.|++||++|+.
T Consensus       198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            3479999999999999999999999999999999962           13589999999999974

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.40  E-value=6.1e-13  Score=92.65  Aligned_cols=64  Identities=23%  Similarity=0.310  Sum_probs=57.2

Q ss_pred             cCccchhccCCC--CCHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278           10 RSLYEVLRVEPM--TTISEIKTTYRSLAKVYHPDLSGNS---------QDFIKIHNIYETLSDPTTRAVYDMSLV   73 (107)
Q Consensus        10 ~~~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~---------~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   73 (107)
                      .|||++|||++.  .+...|+++|+.|.+.+|||+....         +....||+||.+|+||.+|..|=..+.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~   76 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN   76 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence            599999999987  7999999999999999999997321         257899999999999999999988775

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.26  E-value=5.5e-12  Score=98.14  Aligned_cols=69  Identities=28%  Similarity=0.420  Sum_probs=62.4

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchhHHHHHHHhhhhcc
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---------SQDFIKIHNIYETLSDPTTRAVYDMSLVSRRR   77 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   77 (107)
                      .-|+|+||||+.+++..+||++||+|+.++||||.+.         ++.+..|++||..|+|...|..|-.+|.....
T Consensus        97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p  174 (610)
T COG5407          97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP  174 (610)
T ss_pred             CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence            4689999999999999999999999999999999855         34899999999999999999999999876443

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=8.7e-12  Score=88.32  Aligned_cols=64  Identities=27%  Similarity=0.442  Sum_probs=57.5

Q ss_pred             CCCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHcCCchhHHHH
Q 044278            5 AQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS-----QDFIKIHNIYETLSDPTTRAVY   68 (107)
Q Consensus         5 ~~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-----~~f~~i~~Ay~~L~d~~~R~~Y   68 (107)
                      +.+.+.|+|+||.|.|..+.++|++.||+|+...|||+|+++     .+|--|..||..|-++..|..-
T Consensus        48 styfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~  116 (250)
T KOG1150|consen   48 STYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRC  116 (250)
T ss_pred             ccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            445789999999999999999999999999999999999876     3799999999999999866543

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.22  E-value=3.6e-11  Score=82.58  Aligned_cols=53  Identities=32%  Similarity=0.530  Sum_probs=46.7

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278           22 TTISEIKTTYRSLAKVYHPDLSGN---------SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus        22 a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      .+..+|+++|+++++++|||+...         ...+..||+||++|+||.+|..|...+.+
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g   64 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHG   64 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence            478899999999999999998632         24799999999999999999999998863

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=1.2e-10  Score=85.93  Aligned_cols=68  Identities=25%  Similarity=0.313  Sum_probs=59.3

Q ss_pred             CCccCccchhccCCC---CCHHHHHHHHHHHHHHhCCCCC------CChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            7 GTGRSLYEVLRVEPM---TTISEIKTTYRSLAKVYHPDLS------GNSQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         7 ~~~~~~Y~iLgv~~~---a~~~~Ik~ayr~l~~~~hPD~~------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      +...|+|.+|||+.-   ++..+|.++.++.+.+||||+.      +..+-|.+|+.||+||+|+..|..||...-.
T Consensus        40 Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~  116 (379)
T COG5269          40 WKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFD  116 (379)
T ss_pred             hhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccc
Confidence            346899999999864   7899999999999999999997      3467899999999999999999999975543

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=6.7e-09  Score=75.46  Aligned_cols=80  Identities=23%  Similarity=0.428  Sum_probs=63.0

Q ss_pred             cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHH-HcCCc--------------hhHHHHHHH
Q 044278           10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYE-TLSDP--------------TTRAVYDMS   71 (107)
Q Consensus        10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~-~L~d~--------------~~R~~Yd~~   71 (107)
                      +.||.||||..+++.++++.+|..|++.+|||.+.   +.+.|..|.+||. ||+..              .--..||-.
T Consensus        47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~~~ktn~~qn~~edee~~~efdik  126 (342)
T KOG0568|consen   47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEKFAKTNARQNIGEDEEDAEEFDIK  126 (342)
T ss_pred             HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHhhhc
Confidence            47999999999999999999999999999999984   4568999999998 66532              222346666


Q ss_pred             hhhhcccCCCCCCCCCCC
Q 044278           72 LVSRRRTRTASFGCLGRS   89 (107)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~   89 (107)
                      .....++.+-+|.+.|.+
T Consensus       127 ~kapqhrhyls~egig~g  144 (342)
T KOG0568|consen  127 HKAPQHRHYLSFEGIGFG  144 (342)
T ss_pred             cCCchhhhhhcccCcccC
Confidence            666666677777766655

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=3.5e-08  Score=63.43  Aligned_cols=50  Identities=26%  Similarity=0.298  Sum_probs=46.3

Q ss_pred             cchhccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCc
Q 044278           13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDP   62 (107)
Q Consensus        13 Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~   62 (107)
                      -.||||++.++.+.||+++|++....|||+++..=.-.+||+|+++|...
T Consensus        59 ~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   59 ALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGT  108 (112)
T ss_pred             HHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence            35999999999999999999999999999999988889999999999743

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=3.4e-07  Score=77.85  Aligned_cols=50  Identities=32%  Similarity=0.505  Sum_probs=43.9

Q ss_pred             CccchhccCCC----CCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHcC
Q 044278           11 SLYEVLRVEPM----TTISEIKTTYRSLAKVYHPDLSGN-SQDFIKIHNIYETLS   60 (107)
Q Consensus        11 ~~Y~iLgv~~~----a~~~~Ik~ayr~l~~~~hPD~~~~-~~~f~~i~~Ay~~L~   60 (107)
                      +-|+||.|+-+    -..++||++|++|+.+|||||++. -++|..+|+||+.|+
T Consensus      1282 ~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1282 LAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred             HHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence            67999999854    245889999999999999999975 569999999999998

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=2e-06  Score=58.91  Aligned_cols=69  Identities=26%  Similarity=0.500  Sum_probs=57.1

Q ss_pred             CCCccCccchhccCCC--CCHHHHHHHHHHHHHHhCCCCC---------CChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            6 QGTGRSLYEVLRVEPM--TTISEIKTTYRSLAKVYHPDLS---------GNSQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         6 ~~~~~~~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~---------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      -+.+.+||.+||....  .+.+.+...|....+++|||+.         .+.+....|++||.+|.||..|+.|=..+..
T Consensus         4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g   83 (168)
T KOG3192|consen    4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG   83 (168)
T ss_pred             cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence            3557899999987544  5777788899999999999985         2345799999999999999999999877755

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.00017  Score=50.08  Aligned_cols=50  Identities=30%  Similarity=0.449  Sum_probs=43.2

Q ss_pred             cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC-----------ChHHHHHHHHHHHHc
Q 044278           10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG-----------NSQDFIKIHNIYETL   59 (107)
Q Consensus        10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~-----------~~~~f~~i~~Ay~~L   59 (107)
                      .+.|.+|++.......+|+++|+.+....|||+..           ..++++.|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            68899999999999999999999999999999852           234788888888754

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.00027  Score=49.14  Aligned_cols=63  Identities=30%  Similarity=0.546  Sum_probs=51.5

Q ss_pred             CccchhccCCCC--CHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278           11 SLYEVLRVEPMT--TISEIKTTYRSLAKVYHPDLSGNS---------QDFIKIHNIYETLSDPTTRAVYDMSLV   73 (107)
Q Consensus        11 ~~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~---------~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   73 (107)
                      +++..+|..+..  ..+.++..|+.+.+.+|||+....         +.+..++.||.+|.+|..|..|=....
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~   75 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA   75 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence            466667776654  567789999999999999998432         368899999999999999999987665

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=97.05  E-value=0.0018  Score=43.17  Aligned_cols=52  Identities=23%  Similarity=0.263  Sum_probs=40.5

Q ss_pred             ccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCch
Q 044278           12 LYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPT   63 (107)
Q Consensus        12 ~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~   63 (107)
                      -..||||++..+.++|.+.|.+|-...+|++++..=.-..|..|.+.|..+.
T Consensus        60 A~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El  111 (127)
T PF03656_consen   60 ARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQEL  111 (127)
T ss_dssp             HHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence            4589999999999999999999999999999988777788999999887544

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=96.58  E-value=0.002  Score=51.01  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=21.1

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCC
Q 044278           22 TTISEIKTTYRSLAKVYHPDLS   43 (107)
Q Consensus        22 a~~~~Ik~ayr~l~~~~hPD~~   43 (107)
                      ++.++||++||+.++.+||||.
T Consensus       400 Vtp~~VKKaYrKA~L~VHPDKl  421 (453)
T KOG0431|consen  400 VTPAQVKKAYRKAVLCVHPDKL  421 (453)
T ss_pred             cCHHHHHHHHHhhhheeCcccc
Confidence            6899999999999999999997

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=93.70  E-value=0.21  Score=35.49  Aligned_cols=38  Identities=18%  Similarity=0.336  Sum_probs=32.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcC
Q 044278           19 EPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLS   60 (107)
Q Consensus        19 ~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~   60 (107)
                      +++|+.+||.+|+.++..+|    .++.+.-..|..||+.|.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~IL   38 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAIL   38 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Confidence            57899999999999999998    456678899999998865

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>PF13446 RPT: A repeated domain in UCH-protein

Probab=92.68  E-value=0.32  Score=27.90  Aligned_cols=44  Identities=16%  Similarity=0.253  Sum_probs=33.5

Q ss_pred             cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcC
Q 044278           10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLS   60 (107)
Q Consensus        10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~   60 (107)
                      ..-|++|||++..+.+.|-.+|+.... -.|      .....+.+|..+|.
T Consensus         5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P------~~~~~~r~AL~~Ia   48 (62)
T PF13446_consen    5 EEAYEILGIDEDTDDDFIISAFQSKVN-DDP------SQKDTLREALRVIA   48 (62)
T ss_pred             HHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh------HhHHHHHHHHHHHH
Confidence            457999999999999999999998887 222      35555666666665

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=90.91  E-value=0.31  Score=36.78  Aligned_cols=49  Identities=27%  Similarity=0.443  Sum_probs=38.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCC--------ChHHHHHHHHHHHHcCCchhHHHHHH
Q 044278           22 TTISEIKTTYRSLAKVYHPDLSG--------NSQDFIKIHNIYETLSDPTTRAVYDM   70 (107)
Q Consensus        22 a~~~~Ik~ayr~l~~~~hPD~~~--------~~~~f~~i~~Ay~~L~d~~~R~~Yd~   70 (107)
                      ++...|+.+|+..++.+||++..        ..+.+++|.+||.+|++...|...|.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~   60 (335)
T KOG0724|consen    4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS   60 (335)
T ss_pred             ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence            56788999999999999999873        23468999999999998655444443

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=90.16  E-value=0.5  Score=30.73  Aligned_cols=42  Identities=17%  Similarity=0.353  Sum_probs=29.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCChH--------HHHHHHHHHHHcCC
Q 044278           20 PMTTISEIKTTYRSLAKVYHPDLSGNSQ--------DFIKIHNIYETLSD   61 (107)
Q Consensus        20 ~~a~~~~Ik~ayr~l~~~~hPD~~~~~~--------~f~~i~~Ay~~L~d   61 (107)
                      +..+..+++.+.|.+-+++|||......        -++.|+.-.+.|..
T Consensus         4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~   53 (112)
T PF14687_consen    4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK   53 (112)
T ss_pred             hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence            3457788999999999999999875443        35555554444443

>KOG3442 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.13  E-value=2.8  Score=27.88  Aligned_cols=49  Identities=22%  Similarity=0.240  Sum_probs=39.7

Q ss_pred             cchhccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCC
Q 044278           13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSD   61 (107)
Q Consensus        13 Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d   61 (107)
                      -.||+|++.-+.++|.+.|..|-....+.+++..=.-..|-.|-+.|..
T Consensus        62 ~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErld~  110 (132)
T KOG3442|consen   62 QQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERLDE  110 (132)
T ss_pred             hhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHHHH
Confidence            4799999999999999999999999988877765555566667776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	107
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		3e-08
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		1e-07
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		3e-07
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		3e-07
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		1e-06
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		3e-06
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		7e-06
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		1e-05
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		1e-05
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		1e-05
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		1e-05
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		2e-05
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		4e-05
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		5e-05
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		6e-05
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		6e-05
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		1e-04
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		1e-04
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		2e-04
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		2e-04
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		3e-04
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		8e-04
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		9e-04

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 11 SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-SQDFIKIHNIYETLSDPTTRAVYD 69
          + Y+VL V+P  T  E+K  YR LA  YHPD + N  + F +I   YE LSD   R +YD
Sbjct: 7  TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYD 66

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 12 LYEVLRVEPMTTISEIKTTYRSLAKVYHPDL-SGNSQDFIKIHNIYETLSDPTTRAVYDM 70
          LY++L V P     E+K  YR  A  YHPD  +G+++ F +I   +E L+DP  R +YD 
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQ 69

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 3  VMAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-SQDFIKIHNIYETLSD 61
           M + TG   Y+VL V+P  + +E+K  YR +A  +HPD + + ++ F +I   YE LSD
Sbjct: 3  AMVKETG--YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSD 60
Query: 62 PTTRAVYDM 70
             R +YD 
Sbjct: 61 EKKRQIYDQ 69

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 8  TGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPT 63
          +G SLY VL ++   T  +IK +YR LA  YHPD + +    +  F +I+N +  L+D T
Sbjct: 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDAT 74
Query: 64 TRAVYD 69
           R +YD
Sbjct: 75 KRNIYD 80

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRA 66
          +  Y ++ V+P   +  IKT YR LA+ YHPD+S        F ++   +E LSD   RA
Sbjct: 5  KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRA 64
Query: 67 VYDMSLVSR 75
           YD     R
Sbjct: 65 EYDQMWQHR 73

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQ---DFIKIHNIYETLSDPTTRA 66
          +  Y +L V+P   +  IKT YR LA+ YHPD+S  +     F  +   +E L D   RA
Sbjct: 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRA 87
Query: 67 VYD 69
           YD
Sbjct: 88 EYD 90

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 9  GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLSDPTTR 65
          G+  Y+ L +    +  EIK  YR  A  YHPD +   G  + F +I   Y+ LSDP  R
Sbjct: 2  GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 66 AVYD 69
           ++D
Sbjct: 62 EIFD 65

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTR 65
          +  YE+L V       EI+  Y+ LA  YHPD +   ++    F +I   YE L+D   R
Sbjct: 3  QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 66 AVYDM 70
          A YD 
Sbjct: 63 AAYDQ 67

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTR 65
          +  YE+L V       EI+  Y+ LA  YHPD +   ++    F +I   YE L+D   R
Sbjct: 3  QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 66 AVYDM 70
          A YD 
Sbjct: 63 AAYDQ 67

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD-----FIKIHNIYETLSDPTTRAV 67
          YEVL V+   +  +IK  YR LA  +HPD + ++++     F  +   YE LSD   R++
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 68 YD 69
          YD
Sbjct: 72 YD 73

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTR 65
          +  YE+L V       EI+  Y+ LA  YHPD +   ++    F +I   YE L+D   R
Sbjct: 3  QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 66 AVYDM 70
          A YD 
Sbjct: 63 AAYDQ 67

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 7  GTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS----QDFIKIHNIYETLSDP 62
          G+    Y++L V    +  EIK  Y  LAK YHPD + +     + F ++   YE LSD 
Sbjct: 4  GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDE 63
Query: 63 TTRAVYDM 70
            R  YD 
Sbjct: 64 VKRKQYDA 71

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD-----FIKIHNIYETLSDPTTRAV 67
          YEVL V    +   IK  YR LA  +HPD +  +++     F ++   YE LSD   R +
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71
Query: 68 YD 69
          YD
Sbjct: 72 YD 73

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 11 SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFI-----KIHNIYETLSDPTTR 65
          S YE+L V    +  +IK  YR  A  +HPD + ++++F      ++   YE LSD   R
Sbjct: 3  SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 66 AVYD 69
           +YD
Sbjct: 63 EIYD 66

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 5  AQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLSD 61
          + G+    YE+L V    +  ++K  YR LA  +HPD +   G ++ F  I   Y  LS+
Sbjct: 2  SSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSN 61
Query: 62 PTTRAVYDM 70
          P  R  YD 
Sbjct: 62 PEKRKQYDQ 70

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLSDPTTRAVYD 69
          Y VL V    + ++IK  Y+ LA+ +HPD +   G    FI+I   YE LS+   R  YD
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS----QDFIKIHNIYETLSDPTTR 65
          ++ Y +L V    +  EI+  ++ LA   HPD + N+     DF+KI+  YE L D   R
Sbjct: 2  QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
Query: 66 AVYD 69
            YD
Sbjct: 62 KKYD 65

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 1  MPVMAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS----------QDFI 50
          M  + Q   +  Y +L  +P   IS++K  Y+ L  +YHPD               Q FI
Sbjct: 1  MMAVEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFI 60
Query: 51 KIHNIYETLSDPTTRAVYDM 70
          +I   ++ L +  T+  YD+
Sbjct: 61 EIDQAWKILGNEETKREYDL 80

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQ----DFIKIHNIYETLSDPTTR 65
          ++ Y +L V    +  EI+  ++ LA   HPD + N+     DF+KI+  YE L D   R
Sbjct: 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 80
Query: 66 AVYD 69
            YD
Sbjct: 81 KKYD 84

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 3  VMAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS----------QDFIKI 52
           + Q   +  Y +L  +P   +S++K  Y+ L  +YHPD               Q FI+I
Sbjct: 9  ALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEI 68
Query: 53 HNIYETLSDPTTRAVYDM 70
             ++ L +  T+  YD+
Sbjct: 69 DQAWKILGNEETKKKYDL 86

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 11 SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTRA 66
          +LY++L V    T ++IK  Y     +YHPD +  S +    F +I   Y  L   T R 
Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77
Query: 67 VYDMSLVS 74
           YD  L+S
Sbjct: 78 KYDRGLLS 85

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 38.5 bits (88), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYD 69
          Y++L V    +  +IK  +  LA  YHPD + +      F +I   YETLSD   R  YD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 3   VMAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-------SQDFIKIHNI 55
           ++ Q   R  Y++L V+      EI   YR LA  +HPD   N        + FI I   
Sbjct: 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA 434
Query: 56  YETLSDPTTRAVYD 69
            E LSDP  R  +D
Sbjct: 435 KEVLSDPEXRKKFD 448

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	107
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	3e-17
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	4e-17
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	8e-17
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	2e-16
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	2e-16
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	2e-16
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	3e-15
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	3e-15
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	3e-15
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	1e-14
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	1e-14
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	1e-14
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-14
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	3e-14
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	3e-14
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	4e-14
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	4e-14
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	8e-14
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	9e-14
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	1e-13
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	2e-13
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	3e-13
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	9e-13
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	8e-12
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	1e-11
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	3e-11
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	5e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-10
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	2e-08
2guz_A	71	Mitochondrial import inner membrane translocase su	2e-08
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	3e-08
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	8e-08
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	7e-04

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 71.9 bits (176), Expect = 3e-17
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 3  VMAQGTGRSLYEVLRVEP--MTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLS 60
          V+ +     L ++L +E      I  ++  Y    K +HPD  G+ +   K++ +Y+ + 
Sbjct: 4  VLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKME 63

Query: 61 DPTTRAVYD 69
          D    A   
Sbjct: 64 DGVKYAHQP 72

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 69.5 bits (170), Expect = 4e-17
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 10 RSLYEVLRVEP--MTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAV 67
            L ++L +E      I  ++  Y    K +HPD  G+ +   K++ +Y+ + D    A 
Sbjct: 8  LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAH 67

Query: 68 YD 69
            
Sbjct: 68 QP 69

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 68.1 bits (167), Expect = 8e-17
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS-GNSQDFIKIHNIYETLSDPTTRAVY 68
            LY++L V P     E+K  YR  A  YHPD   G+++ F +I   +E L+DP  R +Y
Sbjct: 8  TKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIY 67

Query: 69 D 69
          D
Sbjct: 68 D 68

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 66.9 bits (164), Expect = 2e-16
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD-FIKIHNIYETLSDPTTRAVY 68
             Y+VL V+P  + +E+K  YR +A  +HPD + +  + F +I   YE LSD   R +Y
Sbjct: 8  TGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIY 67

Query: 69 D 69
          D
Sbjct: 68 D 68

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 67.8 bits (166), Expect = 2e-16
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 4/66 (6%)

Query: 8  TGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPT 63
          +G SLY VL ++   T  +IK +YR LA  YHPD + ++ +    F +I+N +  L+D T
Sbjct: 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDAT 74

Query: 64 TRAVYD 69
           R +YD
Sbjct: 75 KRNIYD 80

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 68.7 bits (168), Expect = 2e-16
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 13/77 (16%)

Query: 4  MAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPD-LSGNS---------QDFIKIH 53
          M +   +  Y +L  +P   IS++K  Y+ L  +YHPD  S +          Q FI+I 
Sbjct: 7  MPK---KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEID 63

Query: 54 NIYETLSDPTTRAVYDM 70
            ++ L +  T+  YD+
Sbjct: 64 QAWKILGNEETKREYDL 80

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 64.1 bits (157), Expect = 3e-15
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 9  GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDL---SGNSQDFIKIHNIYETLSDPTTR 65
          G+  Y+ L +    +  EIK  YR  A  YHPD     G  + F +I   Y+ LSDP  R
Sbjct: 2  GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61

Query: 66 AVYD 69
           ++D
Sbjct: 62 EIFD 65

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 64.7 bits (158), Expect = 3e-15
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTR 65
           +LY++L V    T ++IK  Y     +YHPD +  S +    F +I   Y  L   T R
Sbjct: 17 TALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLR 76

Query: 66 AVYD 69
            YD
Sbjct: 77 RKYD 80

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 64.3 bits (157), Expect = 3e-15
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 8  TGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLSDPTT 64
               Y VL V    + ++IK  Y+ LA+ +HPD +   G    FI+I   YE LS+   
Sbjct: 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEK 74

Query: 65 RAVYD 69
          R  YD
Sbjct: 75 RTNYD 79

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 62.3 bits (152), Expect = 1e-14
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLSDPTTRA 66
             YE+L V    +  ++K  YR LA  +HPD +   G ++ F  I   Y  LS+P  R 
Sbjct: 7  GDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRK 66

Query: 67 VYD 69
           YD
Sbjct: 67 QYD 69

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 62.8 bits (153), Expect = 1e-14
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)

Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDL-SGNSQD---------FIKIHNIYETLSDP 62
          Y +L  +P   +S++K  Y+ L  +YHPD  S +            FI+I   ++ L + 
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 63 TTRAVYDM 70
           T+  YD+
Sbjct: 79 ETKKKYDL 86

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 65.3 bits (159), Expect = 1e-14
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTR 65
          ++ Y +L V    +  EI+  ++ LA   HPD + N+ +    F+KI+  YE L D   R
Sbjct: 2  QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61

Query: 66 AVYD 69
            YD
Sbjct: 62 KKYD 65

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 65.9 bits (160), Expect = 3e-14
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 4  MAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETL 59
          +     ++ Y +L V    +  EI+  ++ LA   HPD + N+ +    F+KI+  YE L
Sbjct: 15 IEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVL 74

Query: 60 SDPTTRAVYDMSLVSRRRTRTASFG 84
           D   R  YD               
Sbjct: 75 KDEDLRKKYDKYGEKGLEDNQGGQY 99

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 61.5 bits (150), Expect = 3e-14
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTR 65
             Y++L V    +  EIK  Y  LAK YHPD + +       F ++   YE LSD   R
Sbjct: 7  GDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKR 66

Query: 66 AVYD 69
            YD
Sbjct: 67 KQYD 70

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 62.1 bits (151), Expect = 3e-14
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDL-SGNSQ---DFIKIHNIYETLSDPTTR 65
             Y +L  + ++++ +I   ++  A   HPD    N +    F K+    E L++  +R
Sbjct: 20 EDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESR 79

Query: 66 AVYD 69
          A YD
Sbjct: 80 ARYD 83

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 61.9 bits (151), Expect = 4e-14
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTR 65
          +  YE+L V       EI+  Y+ LA  YHPD +   ++    F +I   YE L+D   R
Sbjct: 3  QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62

Query: 66 AVYD 69
          A YD
Sbjct: 63 AAYD 66

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 62.0 bits (151), Expect = 4e-14
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 10 RSLYEVLRVEP-MTTISEIKTTYRSLAKVYHPDLSGNSQD-------FIKIHNIYETLSD 61
           + Y+VL V        ++   YR+LA+ +HPD   N ++       F  I   YETL D
Sbjct: 15 ENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKD 74

Query: 62 PTTRAVYD 69
             +  YD
Sbjct: 75 DEAKTNYD 82

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 60.4 bits (147), Expect = 8e-14
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 2  PVMAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS---QDFIKIHNIYET 58
             +     S Y++L V    +  +IK  +  LA  YHPD + +      F +I   YET
Sbjct: 2  SSGSS---GSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYET 58

Query: 59 LSDPTTRAVYD 69
          LSD   R  YD
Sbjct: 59 LSDANRRKEYD 69

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 60.4 bits (147), Expect = 9e-14
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS-GNSQD----FIKIHNIYETLSDPTT 64
           + YEVL V+   +  +IK  YR LA  +HPD +  N ++    F  +   YE LSD   
Sbjct: 9  ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKK 68

Query: 65 RAVYD 69
          R++YD
Sbjct: 69 RSLYD 73

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 59.6 bits (145), Expect = 1e-13
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS-GNSQD----FIKIHNIYETLSDPTT 64
             YEVL V    +   IK  YR LA  +HPD +  N ++    F ++   YE LSD   
Sbjct: 9  VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68

Query: 65 RAVYD 69
          R +YD
Sbjct: 69 RDIYD 73

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 59.7 bits (145), Expect = 2e-13
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDL-SGNSQD----FIKIHNIYETLSDPTT 64
           S YE+L V    +  +IK  YR  A  +HPD    N +     F ++   YE LSD   
Sbjct: 2  ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61

Query: 65 RAVYD 69
          R +YD
Sbjct: 62 REIYD 66

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 59.0 bits (143), Expect = 3e-13
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLSDPTTRA 66
          +  +++L V+P  +  E+   YR LA + HPD     G+   F  + N    L       
Sbjct: 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG 86

Query: 67 VYD 69
             
Sbjct: 87 PSS 89

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 61.5 bits (150), Expect = 9e-13
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS---QDFIKIHNIYETLSDPTTRA 66
          +  Y +L V+P   +  IKT YR LA+ YHPD+S  +     F  +   +E L D   RA
Sbjct: 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRA 87

Query: 67 VYD 69
           YD
Sbjct: 88 EYD 90

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 57.3 bits (138), Expect = 8e-12
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 13 YEVLRVEPMTTI--SEIKTTYRSLAKVYHPDLSGNS---------QDFIKIHNIYETLSD 61
          + +  +     +    +   ++ L + YHPD   +          Q    I+  ++TL  
Sbjct: 4  FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 62 PTTRAVYDMSL 72
          P  RA Y +SL
Sbjct: 64 PLMRAEYLLSL 74

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 56.1 bits (135), Expect = 3e-11
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 25 SEIKTTYRSLAKVYHPDLSGN-SQDFIKIHNIYETLSDPTTRAVYDMSL 72
          S ++  YR L   +HPD++   S+    ++  Y TL DP  R+ Y + L
Sbjct: 33 SRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL 81

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 53.0 bits (127), Expect = 5e-11
 Identities = 10/71 (14%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 3  VMAQGTGRSLYEVLRVEP--MTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLS 60
          V+++     L E+L++          ++  Y+  + + HPD  G+     ++++++ T  
Sbjct: 4  VLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFK 63

Query: 61 DPTTRAVYDMS 71
                  ++ 
Sbjct: 64 TEVYNLRMNLG 74

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.8 bits (135), Expect = 1e-10
 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 6   QGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS-------QDFIKIHNIYET 58
           Q   R  Y++L V+      EI   YR LA  +HPD   N        + FI I    E 
Sbjct: 378 QSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEV 437

Query: 59  LSDPTTRAVYDM 70
           LSDP  R  +D 
Sbjct: 438 LSDPEMRKKFDD 449

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 47.0 bits (112), Expect = 2e-08
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 8/65 (12%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD-----FIKIHNIYETLSDPTT 64
          + +  V+        SE K   R L   +HPD +  + D     F  + N    L     
Sbjct: 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK--- 72

Query: 65 RAVYD 69
          +A  D
Sbjct: 73 QAFLD 77

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 46.2 bits (110), Expect = 2e-08
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 13 YEVLRVEPMT-TISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTR 65
           ++L +   T T  ++K  +R +    HPD  G+     KI+   + L      
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS 70

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 48.2 bits (114), Expect = 3e-08
 Identities = 12/73 (16%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 10  RSLYEVLRVEPMTTIS--EIKTTYRSLAKVYHPDLSGNS---------QDFIKIHNIYET 58
           R  + ++       +   +++  Y+ L ++ HPD              +    +++ Y+T
Sbjct: 43  RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKT 102

Query: 59  LSDPTTRAVYDMS 71
           L  P +R +Y + 
Sbjct: 103 LLAPLSRGLYLLK 115

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 47.1 bits (111), Expect = 8e-08
 Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 9   GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD-------FIKIHNIYETLSD 61
           G + ++ + +  + T  ++K  YR    V HPD +            F+++++ +    +
Sbjct: 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 175

Query: 62  PTTRAVY 68
              + +Y
Sbjct: 176 QGQKPLY 182

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 35.0 bits (80), Expect = 7e-04
 Identities = 10/60 (16%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 9  GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPD-LSGNSQD------FIKIHNIYETLSD 61
          G + ++ + +  + T  ++K  YR    V HP   +G   +      F+++++ +    +
Sbjct: 32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	107
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.9
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.9
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.89
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.89
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.89
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.89
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.88
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.88
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.88
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.88
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.88
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.88
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.87
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.87
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.86
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.85
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.85
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.83
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.82
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.82
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.81
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.81
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.81
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.79
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.78
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.77
2guz_A	71	Mitochondrial import inner membrane translocase su	99.77
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.75
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.75
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.71
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.7
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.67
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.65
2guz_B	65	Mitochondrial import inner membrane translocase su	99.27
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.23
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	93.83

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.3e-23  Score=131.60  Aligned_cols=71  Identities=35%  Similarity=0.642  Sum_probs=65.0

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCC-CChHHHHHHHHHHHHcCCchhHHHHHHHhhhhcccC
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS-GNSQDFIKIHNIYETLSDPTTRAVYDMSLVSRRRTR   79 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~-~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~   79 (107)
                      ..|||+||||++.++.++||++|++|++++|||++ .+.+.|+.|++||++|+||.+|..||.++.......
T Consensus         7 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~   78 (92)
T 2o37_A            7 ETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEAARSG   78 (92)
T ss_dssp             CCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHTT
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhcc
Confidence            57999999999999999999999999999999998 456799999999999999999999999987755443

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.90  E-value=8.7e-24  Score=128.66  Aligned_cols=68  Identities=35%  Similarity=0.572  Sum_probs=63.1

Q ss_pred             CCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278            6 QGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLV   73 (107)
Q Consensus         6 ~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   73 (107)
                      .....|||+||||+++++.++||++|++|++++|||+++.    .+.|+.|++||++|+||.+|..||.++.
T Consensus         3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   74 (79)
T 2dn9_A            3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGS   74 (79)
T ss_dssp             SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCC
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccC
Confidence            4567899999999999999999999999999999999864    4689999999999999999999999874

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=3e-23  Score=128.89  Aligned_cols=72  Identities=35%  Similarity=0.511  Sum_probs=65.3

Q ss_pred             CCCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhhhhc
Q 044278            5 AQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLVSRR   76 (107)
Q Consensus         5 ~~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   76 (107)
                      +.....+||+||||++.++.++||++|++|++++|||+++.   .+.|+.|++||++|+||.+|..||..+...-
T Consensus         2 s~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   76 (88)
T 2ctr_A            2 SSGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAF   76 (88)
T ss_dssp             CSCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHH
T ss_pred             CCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            34567899999999999999999999999999999999975   4589999999999999999999999886543

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.89  E-value=2.3e-23  Score=125.19  Aligned_cols=66  Identities=35%  Similarity=0.611  Sum_probs=61.3

Q ss_pred             CccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278            8 TGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-SQDFIKIHNIYETLSDPTTRAVYDMSLV   73 (107)
Q Consensus         8 ~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   73 (107)
                      ...+||+||||+++++.++|+++|++|++++|||+++. .+.|+.|++||++|+||.+|..||..|.
T Consensus         6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            35799999999999999999999999999999999965 5799999999999999999999999874

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=1.1e-23  Score=128.06  Aligned_cols=70  Identities=31%  Similarity=0.521  Sum_probs=63.8

Q ss_pred             CCCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            5 AQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         5 ~~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      +.....|||+||||++.++.++||++|++|++++|||+++.   .+.|+.|++||++|+||.+|..||..+..
T Consensus         2 s~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   74 (78)
T 2ctp_A            2 SSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSG   74 (78)
T ss_dssp             CCSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSC
T ss_pred             CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence            34567899999999999999999999999999999999854   46899999999999999999999998753

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=2.8e-23  Score=131.59  Aligned_cols=70  Identities=31%  Similarity=0.523  Sum_probs=63.8

Q ss_pred             CCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhhh
Q 044278            6 QGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVSR   75 (107)
Q Consensus         6 ~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   75 (107)
                      .....+||+||||++.++.++||++|++|++++|||+++.    .+.|+.|++||++|+||.+|..||..+...
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~   86 (99)
T 2yua_A           13 SYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSD   86 (99)
T ss_dssp             SSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCH
T ss_pred             CCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcccc
Confidence            4557899999999999999999999999999999999964    568999999999999999999999977553

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.88  E-value=4.8e-23  Score=126.16  Aligned_cols=68  Identities=34%  Similarity=0.505  Sum_probs=62.6

Q ss_pred             CCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278            6 QGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS-----QDFIKIHNIYETLSDPTTRAVYDMSLV   73 (107)
Q Consensus         6 ~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-----~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   73 (107)
                      .+...|||+||||+++++.++||++|++|++++|||+++..     +.|+.|++||++|+||.+|..||..+.
T Consensus         5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   77 (82)
T 2ej7_A            5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS   77 (82)
T ss_dssp             CSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred             CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence            45578999999999999999999999999999999999653     489999999999999999999999874

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.88  E-value=6.6e-23  Score=127.33  Aligned_cols=68  Identities=32%  Similarity=0.509  Sum_probs=62.7

Q ss_pred             CCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            7 GTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         7 ~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ....|||+||||++.++.++||++|++|++++|||+++   +.+.|+.|++||++|+||.+|..||.++..
T Consensus        14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   84 (88)
T 2cug_A           14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG   84 (88)
T ss_dssp             SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred             cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence            35789999999999999999999999999999999985   356899999999999999999999998853

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.88  E-value=8.7e-23  Score=123.74  Aligned_cols=66  Identities=33%  Similarity=0.559  Sum_probs=61.4

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ..|||+||||+++++.++||++|++|++++|||+++   +.+.|+.|++||++|+||.+|..||.++..
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   70 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE   70 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGG
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccc
Confidence            469999999999999999999999999999999985   356899999999999999999999998854

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=9.9e-23  Score=131.68  Aligned_cols=71  Identities=23%  Similarity=0.368  Sum_probs=64.9

Q ss_pred             CCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhhhc
Q 044278            6 QGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVSRR   76 (107)
Q Consensus         6 ~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   76 (107)
                      .....|||+||||+++++.++||++|++|++++|||+++.    .+.|+.|++||++|+||.+|..||..+....
T Consensus        16 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~   90 (112)
T 2ctq_A           16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM   90 (112)
T ss_dssp             CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred             ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence            3457899999999999999999999999999999999964    5799999999999999999999999987643

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=9.8e-23  Score=127.35  Aligned_cols=69  Identities=33%  Similarity=0.540  Sum_probs=63.0

Q ss_pred             CCCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278            5 AQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-----SQDFIKIHNIYETLSDPTTRAVYDMSLV   73 (107)
Q Consensus         5 ~~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   73 (107)
                      +.+...|||+||||++.++.++||++|++|++++|||+++.     .+.|+.|++||++|+||.+|..||..+.
T Consensus         4 ~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   77 (92)
T 2dmx_A            4 GSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC   77 (92)
T ss_dssp             CCCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred             CCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence            34557899999999999999999999999999999999865     3589999999999999999999999874

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.88  E-value=3.2e-23  Score=129.80  Aligned_cols=68  Identities=28%  Similarity=0.580  Sum_probs=62.1

Q ss_pred             CCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----------hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            7 GTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----------SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         7 ~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----------~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ....|||+||||+++++.++||++|++|++++|||+++.          .+.|+.|++||++|+||.+|..||..+..
T Consensus        13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   90 (94)
T 1wjz_A           13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG   90 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence            346899999999999999999999999999999999752          35899999999999999999999998854

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.87  E-value=3e-22  Score=128.93  Aligned_cols=70  Identities=37%  Similarity=0.568  Sum_probs=64.1

Q ss_pred             CCCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            5 AQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         5 ~~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ......+||+||||++.++.++||++|++|++++|||+++.    .+.|+.|++||++|+||.+|..||..+..
T Consensus        12 ~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   85 (109)
T 2ctw_A           12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSL   85 (109)
T ss_dssp             TTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHH
T ss_pred             cCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccc
Confidence            34557899999999999999999999999999999999975    46899999999999999999999998765

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.87  E-value=2.2e-22  Score=127.65  Aligned_cols=66  Identities=33%  Similarity=0.533  Sum_probs=60.7

Q ss_pred             cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchhHHHHHHHhhhh
Q 044278           10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-----SQDFIKIHNIYETLSDPTTRAVYDMSLVSR   75 (107)
Q Consensus        10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   75 (107)
                      .|||+||||+++++.++||++|++|++++|||+++.     .+.|+.|++||++|+||.+|..||..+...
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~   72 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREG   72 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            489999999999999999999999999999999864     358999999999999999999999988543

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.86  E-value=6.7e-22  Score=133.93  Aligned_cols=73  Identities=29%  Similarity=0.574  Sum_probs=65.6

Q ss_pred             CCCCCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh----------HHHHHHHHHHHHcCCchhHHHHHHHh
Q 044278            3 VMAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS----------QDFIKIHNIYETLSDPTTRAVYDMSL   72 (107)
Q Consensus         3 ~~~~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~----------~~f~~i~~Ay~~L~d~~~R~~Yd~~~   72 (107)
                      .+......|||+||||+++++.++||++|++|++++|||+++..          +.|+.|++||++|+||.+|..||..+
T Consensus         3 ~~~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~   82 (155)
T 2l6l_A            3 AVEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR   82 (155)
T ss_dssp             CCCCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred             CcccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            35566778999999999999999999999999999999998532          68999999999999999999999888


Q ss_pred             hhh
Q 044278           73 VSR   75 (107)
Q Consensus        73 ~~~   75 (107)
                      ...
T Consensus        83 ~~~   85 (155)
T 2l6l_A           83 CED   85 (155)
T ss_dssp             HHH
T ss_pred             chh
Confidence            653

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.85  E-value=5.6e-22  Score=127.41  Aligned_cols=68  Identities=32%  Similarity=0.458  Sum_probs=63.0

Q ss_pred             CCccCccchhccCCCC-CHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            7 GTGRSLYEVLRVEPMT-TISEIKTTYRSLAKVYHPDLSGN-------SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         7 ~~~~~~Y~iLgv~~~a-~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ....|||+||||++++ +.++||++|++|++++|||+++.       .+.|+.|++||++|+||.+|..||..+..
T Consensus        12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~   87 (109)
T 2qsa_A           12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH   87 (109)
T ss_dssp             TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred             cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence            3478999999999999 99999999999999999999875       45899999999999999999999999854

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.85  E-value=3e-22  Score=127.60  Aligned_cols=67  Identities=34%  Similarity=0.555  Sum_probs=61.9

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVSR   75 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   75 (107)
                      ..|||+||||+++++.++||++|++|++++|||+++.    .+.|+.|++||++|+||.+|..||..+...
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   72 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA   72 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhh
Confidence            4699999999999999999999999999999999863    468999999999999999999999988654

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.83  E-value=1.1e-22  Score=132.10  Aligned_cols=66  Identities=20%  Similarity=0.265  Sum_probs=61.8

Q ss_pred             ccCccchhccCCCCCH--HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTI--SEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~--~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ..++|+||||++.++.  ++||++||+|++++|||+++..++|++|++||+||+||.+|..||.++..
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~~~~~~~~   74 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGF   74 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHHhhhcccc
Confidence            4689999999999988  99999999999999999999999999999999999999999999976643

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.82  E-value=2.4e-22  Score=138.79  Aligned_cols=74  Identities=20%  Similarity=0.295  Sum_probs=63.9

Q ss_pred             CCCCCCccCccchhccCCCCC--HHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHHHHhhhhc
Q 044278            3 VMAQGTGRSLYEVLRVEPMTT--ISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMSLVSRR   76 (107)
Q Consensus         3 ~~~~~~~~~~Y~iLgv~~~a~--~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   76 (107)
                      +|+.....++|+||||+++|+  .++||+|||++++++|||++++.++|+.|++||++|+||.+|+.||..+....
T Consensus         4 ~l~~~~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~YD~~G~~w~   79 (174)
T 2pf4_E            4 VLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWD   79 (174)
T ss_dssp             TSCHHHHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHTSCGGGGCC-
T ss_pred             hhcccccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHHHhccCCccc
Confidence            345556789999999999998  69999999999999999999999999999999999999999999999996443

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.82  E-value=1.2e-21  Score=119.64  Aligned_cols=63  Identities=14%  Similarity=0.339  Sum_probs=58.4

Q ss_pred             CCCCccCccchhccCCC--CCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHH
Q 044278            5 AQGTGRSLYEVLRVEPM--TTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAV   67 (107)
Q Consensus         5 ~~~~~~~~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~   67 (107)
                      +.....++|+||||+++  ++.++||++||+|++++|||++++.+.|+.|++||++|+++.+|..
T Consensus         6 ~~~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~   70 (79)
T 1faf_A            6 SRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLR   70 (79)
T ss_dssp             CHHHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cchhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence            44455789999999999  9999999999999999999999999999999999999999998875

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.81  E-value=1.8e-20  Score=130.57  Aligned_cols=66  Identities=33%  Similarity=0.529  Sum_probs=61.0

Q ss_pred             cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhhh
Q 044278           10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVSR   75 (107)
Q Consensus        10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   75 (107)
                      .|||+||||+++|+.++||+|||+|++++|||+++.    .++|+.|++||++|+||.+|..||..+...
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~   71 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG   71 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccc
Confidence            589999999999999999999999999999999853    458999999999999999999999988553

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=1.2e-20  Score=117.72  Aligned_cols=58  Identities=26%  Similarity=0.474  Sum_probs=54.0

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCC---CChHHHHHHHHHHHHcCCchhHH
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLSDPTTRA   66 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~---~~~~~f~~i~~Ay~~L~d~~~R~   66 (107)
                      ..|||+||||+++++.++||++|++|++++|||++   .+.+.|+.|++||++|+||.+|.
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~   86 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG   86 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence            47999999999999999999999999999999998   44679999999999999998875

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.79  E-value=4.8e-20  Score=126.98  Aligned_cols=64  Identities=23%  Similarity=0.429  Sum_probs=59.0

Q ss_pred             CccchhccCCCC--CHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278           11 SLYEVLRVEPMT--TISEIKTTYRSLAKVYHPDLSGNS---------QDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus        11 ~~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~---------~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      |||+||||++++  +..+||++|++|++++|||+++..         +.|..|++||+||+||.+|..||..+.+
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g   76 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG   76 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcC
Confidence            899999999998  999999999999999999998542         4799999999999999999999998753

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.78  E-value=2.2e-19  Score=127.02  Aligned_cols=67  Identities=19%  Similarity=0.460  Sum_probs=59.9

Q ss_pred             CCccCccchhccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278            7 GTGRSLYEVLRVEPM--TTISEIKTTYRSLAKVYHPDLSGN---------SQDFIKIHNIYETLSDPTTRAVYDMSLV   73 (107)
Q Consensus         7 ~~~~~~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   73 (107)
                      ....|||+||||++.  ++..+||++||+|++++|||+++.         .+.|+.|++||+||+||.+|..||..+.
T Consensus        40 ~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~  117 (207)
T 3bvo_A           40 DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLH  117 (207)
T ss_dssp             CTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred             CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence            346899999999986  799999999999999999999853         2368999999999999999999998764

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.77  E-value=1.7e-19  Score=125.31  Aligned_cols=70  Identities=26%  Similarity=0.501  Sum_probs=61.8

Q ss_pred             CCCCCCccCccchh------ccCC-CCCHHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHcCCchhHHHHHHHh
Q 044278            3 VMAQGTGRSLYEVL------RVEP-MTTISEIKTTYRSLAKVYHPDLSG-NSQDFIKIHNIYETLSDPTTRAVYDMSL   72 (107)
Q Consensus         3 ~~~~~~~~~~Y~iL------gv~~-~a~~~~Ik~ayr~l~~~~hPD~~~-~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   72 (107)
                      ++.+....|||+||      |+++ +++..+||++||+|++++|||+++ +.+.|+.|++||+||+||.+|..||..+
T Consensus         4 ~~~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A            4 LVQRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             ---CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             ccCCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            34667789999999      4665 799999999999999999999997 6779999999999999999999999987

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.77  E-value=1.3e-19  Score=108.41  Aligned_cols=57  Identities=19%  Similarity=0.254  Sum_probs=53.2

Q ss_pred             ccCccchhccCC-CCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhH
Q 044278            9 GRSLYEVLRVEP-MTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTR   65 (107)
Q Consensus         9 ~~~~Y~iLgv~~-~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R   65 (107)
                      ..++|+||||++ +++.++|+++|++|++++|||++++.+.|+.|++||++|+++..|
T Consensus        13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence            368999999999 799999999999999999999999999999999999999987654

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.75  E-value=5.7e-20  Score=137.66  Aligned_cols=65  Identities=37%  Similarity=0.635  Sum_probs=0.0

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLV   73 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   73 (107)
                      .+|||+||||+++|+.++||+|||+|+++||||+++.   .++|++|++||++|+||.+|..||.++.
T Consensus        27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~   94 (329)
T 3lz8_A           27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ   94 (329)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence            4799999999999999999999999999999999853   5689999999999999999999999843

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.75  E-value=3.9e-19  Score=110.56  Aligned_cols=60  Identities=20%  Similarity=0.172  Sum_probs=54.1

Q ss_pred             CCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchhH
Q 044278            6 QGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-----SQDFIKIHNIYETLSDPTTR   65 (107)
Q Consensus         6 ~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R   65 (107)
                      .....++|+||||+++++.++||++|++|+++||||+++.     .+.|+.|++||++|++...|
T Consensus        12 ~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             SSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence            3456789999999999999999999999999999999975     46899999999999987665

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.71  E-value=9.8e-19  Score=121.44  Aligned_cols=60  Identities=18%  Similarity=0.458  Sum_probs=54.9

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHcCCchhHHHH
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-------SQDFIKIHNIYETLSDPTTRAVY   68 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d~~~R~~Y   68 (107)
                      ..++|+||||++.++.++||++||++++++|||+++.       .+.|+.|++||++|+|+.+|..|
T Consensus       116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            3699999999999999999999999999999999842       35899999999999999999765

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.70  E-value=3.1e-18  Score=109.82  Aligned_cols=54  Identities=13%  Similarity=0.249  Sum_probs=49.0

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----------hHHHHHHHHHHHHcCCch
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-----------SQDFIKIHNIYETLSDPT   63 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----------~~~f~~i~~Ay~~L~d~~   63 (107)
                      ..+||+|||++. |+.++||+|||++++++|||+++.           .++|+.|++||++|+|+.
T Consensus        40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            479999999996 999999999999999999999741           468999999999999975

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.67  E-value=7.6e-18  Score=105.50  Aligned_cols=52  Identities=15%  Similarity=0.363  Sum_probs=47.6

Q ss_pred             cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHcCC
Q 044278           10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-------SQDFIKIHNIYETLSD   61 (107)
Q Consensus        10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d   61 (107)
                      .++|++|||++.|+.++||+|||++++++|||+++.       .+.|+.|++||++|.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999999853       3489999999999964

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.65  E-value=9e-18  Score=135.49  Aligned_cols=69  Identities=32%  Similarity=0.500  Sum_probs=40.7

Q ss_pred             CCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            6 QGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         6 ~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      .....|||+||||+++|+.++||+|||+|++++|||+++.    .++|+.|++||++|+||.+|..||..+..
T Consensus        17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~   89 (780)
T 3apo_A           17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK   89 (780)
T ss_dssp             ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC---
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccc
Confidence            4457899999999999999999999999999999999853    45899999999999999999999998865

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.27  E-value=4.6e-12  Score=74.42  Aligned_cols=52  Identities=17%  Similarity=0.173  Sum_probs=48.2

Q ss_pred             cCccchhccCCC---CCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCC
Q 044278           10 RSLYEVLRVEPM---TTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSD   61 (107)
Q Consensus        10 ~~~Y~iLgv~~~---a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d   61 (107)
                      ..-|.||||++.   ++.++|+++|++|...+|||++++.-....|++|+++|..
T Consensus         4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~   58 (65)
T 2guz_B            4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKW   58 (65)
T ss_dssp             HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            345889999999   9999999999999999999999999999999999999964

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.23  E-value=7.6e-12  Score=92.21  Aligned_cols=62  Identities=39%  Similarity=0.565  Sum_probs=52.9

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHHHcCCchhHHHHHH
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS-------QDFIKIHNIYETLSDPTTRAVYDM   70 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-------~~f~~i~~Ay~~L~d~~~R~~Yd~   70 (107)
                      ..++|.+||+.+.++.++|+++|+++++++|||+.+..       +.|+.|.+||++|+||.+|..||.
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            35899999999999999999999999999999998654       389999999999999999999996

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=93.83  E-value=0.044  Score=43.47  Aligned_cols=48  Identities=15%  Similarity=0.146  Sum_probs=37.4

Q ss_pred             CCccCccchhccCCCCCH--HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Q 044278            7 GTGRSLYEVLRVEPMTTI--SEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYET   58 (107)
Q Consensus         7 ~~~~~~Y~iLgv~~~a~~--~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~   58 (107)
                      ...++||.|||++.....  ..|+++||++++...++    .+++..|..|..|
T Consensus       626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----~~r~~lvd~a~~v  675 (681)
T 2pzi_A          626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----RHRYTLVDMANKV  675 (681)
T ss_dssp             SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----HHHHHHHHHHHHH
T ss_pred             ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----HHHHHHHHHhccc
Confidence            345669999999766544  67999999999965554    4688899988876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	107
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	3e-14
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	4e-12
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	7e-12
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	2e-11
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	5e-10
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-09
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	4e-09
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	1e-06

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 60.4 bits (146), Expect = 3e-14
 Identities = 10/70 (14%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 3  VMAQGTGRSLYEVLRVEPMTTIS--EIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLS 60
          V+++     L E+L++          ++  Y+  + + HPD  G+     ++++++ T  
Sbjct: 4  VLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFK 63

Query: 61 DPTTRAVYDM 70
                  ++
Sbjct: 64 TEVYNLRMNL 73

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.1 bits (132), Expect = 4e-12
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 10/71 (14%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----------FIKIHNIYETL 59
          +  Y +L  +P   +S++K  Y+ L  +YHPD                 FI+I   ++ L
Sbjct: 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75

Query: 60 SDPTTRAVYDM 70
           +  T+  YD+
Sbjct: 76 GNEETKKKYDL 86

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.9 bits (132), Expect = 7e-12
 Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 9  GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD-------FIKIHNIYETLSD 61
          G + ++ + +  + T  ++K  YR    V HPD +            F+++++ +    +
Sbjct: 32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 91

Query: 62 PTTRAVY 68
             + +Y
Sbjct: 92 QGQKPLY 98

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 53.1 bits (127), Expect = 2e-11
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 11/71 (15%)

Query: 13 YEVLRVEPMTTIS--EIKTTYRSLAKVYHPDLSGNSQD---------FIKIHNIYETLSD 61
          + +  +     +    +   ++ L + YHPD   +               I+  ++TL  
Sbjct: 4  FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 62 PTTRAVYDMSL 72
          P  RA Y +SL
Sbjct: 64 PLMRAEYLLSL 74

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 49.6 bits (118), Expect = 5e-10
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTR 65
          +  YE+L V       EI+  Y+ LA  YHPD +   ++    F +I   YE L+D   R
Sbjct: 3  QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62

Query: 66 AVYDM 70
          A YD 
Sbjct: 63 AAYDQ 67

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 49.4 bits (117), Expect = 1e-09
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 10 RSLYEVLRVEP--MTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAV 67
            L ++L +E      I  ++  Y    K +HPD  G+ +   K++ +Y+ + D    A 
Sbjct: 8  LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAH 67

Query: 68 YD 69
            
Sbjct: 68 QP 69

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 4e-09
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 9  GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDF---IKIHNIYETLSDPTTR 65
          G+  Y+ L +    +  EIK  YR  A  YHPD +          +I   Y+ LSDP  R
Sbjct: 2  GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61

Query: 66 AVYDM 70
           ++D 
Sbjct: 62 EIFDR 66

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 1e-06
 Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 8/73 (10%)

Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPD-----LSGNSQDFIKIHNIYETLSDPTT 64
          + +  V+        SE K   R L   +HPD         ++ F  + N    L     
Sbjct: 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK--- 72

Query: 65 RAVYDMSLVSRRR 77
          +A  D +     R
Sbjct: 73 QAFLDQNADRASR 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	107
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.91
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.88
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.88
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.86
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.8
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.69
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.68

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3.2e-25  Score=133.00  Aligned_cols=66  Identities=35%  Similarity=0.567  Sum_probs=60.7

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      .+|||+||||+++||.++||+||+++++++|||+++.    .+.|..|++||+||+||.+|..||.+|..
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   71 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA   71 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTS
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCcc
Confidence            4799999999999999999999999999999999854    24799999999999999999999998743

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.6e-24  Score=127.17  Aligned_cols=67  Identities=33%  Similarity=0.551  Sum_probs=61.4

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhhhh
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLVSR   75 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   75 (107)
                      .+|||+||||+++++.++|+++|+++++++|||++..   .+.|..|++||+||+||.+|..||.++...
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~   71 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG   71 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhh
Confidence            4799999999999999999999999999999999854   357999999999999999999999987553

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.4e-23  Score=130.63  Aligned_cols=70  Identities=29%  Similarity=0.576  Sum_probs=62.1

Q ss_pred             CCCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----------hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            5 AQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----------SQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         5 ~~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----------~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      .....+|||+||||+++++.++||++|++|++++|||++..          .+.|+.|++||+||+||.+|..||..+..
T Consensus        11 ~~~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~   90 (94)
T d1wjza_          11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG   90 (94)
T ss_dssp             SSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred             hhhhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccCC
Confidence            34456899999999999999999999999999999999743          24699999999999999999999988643

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.88  E-value=4.8e-25  Score=141.53  Aligned_cols=66  Identities=21%  Similarity=0.328  Sum_probs=61.8

Q ss_pred             ccCccchhccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278            9 GRSLYEVLRVEPMT--TISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMSLVS   74 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (107)
                      ..++|+||||+++|  +.++||+||++|++++|||++++.++|+.|++||+||+||.+|..||..+..
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~e~F~~I~~AY~vLsd~~kR~~YD~~~~~   74 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGF   74 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhCCHHHHHHHhccCCC
Confidence            56899999999998  7889999999999999999999999999999999999999999999976643

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.86  E-value=1.3e-23  Score=127.08  Aligned_cols=70  Identities=14%  Similarity=0.338  Sum_probs=64.6

Q ss_pred             CCCCCCccCccchhccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHHHHh
Q 044278            3 VMAQGTGRSLYEVLRVEPMT--TISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMSL   72 (107)
Q Consensus         3 ~~~~~~~~~~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   72 (107)
                      +|+.....++|+||||++++  +.++||+||+++++++|||++++.++|++|++||++|+|+.+|..||..+
T Consensus         4 ~ls~~~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~~e~~~~in~Ay~~L~d~~~r~~~~~~~   75 (79)
T d1fafa_           4 VLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             CCCHHHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             hhhHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHCCHHHHHHHccCC
Confidence            35666778999999999987  99999999999999999999999999999999999999999999998655

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.5e-20  Score=112.47  Aligned_cols=64  Identities=23%  Similarity=0.414  Sum_probs=56.0

Q ss_pred             cCccchhccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278           10 RSLYEVLRVEPM--TTISEIKTTYRSLAKVYHPDLSGN---------SQDFIKIHNIYETLSDPTTRAVYDMSLV   73 (107)
Q Consensus        10 ~~~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   73 (107)
                      .|||+||||++.  ++.++|+++|+++++++|||+...         ...|..|++||+||+||.+|..|+..+.
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l~   75 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence            389999999986  458999999999999999999732         2368999999999999999999987663

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=7.9e-19  Score=109.64  Aligned_cols=60  Identities=18%  Similarity=0.458  Sum_probs=54.4

Q ss_pred             ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHcCCchhHHHH
Q 044278            9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-------SQDFIKIHNIYETLSDPTTRAVY   68 (107)
Q Consensus         9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d~~~R~~Y   68 (107)
                      ..+.|++|||...++.++||++|+++++.+|||++++       ...|+.|++||++|+||.+|..|
T Consensus        32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            4678999999999999999999999999999998743       34799999999999999999866

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.9e-18  Score=104.11  Aligned_cols=55  Identities=22%  Similarity=0.218  Sum_probs=49.5

Q ss_pred             CCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCC
Q 044278            7 GTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-----SQDFIKIHNIYETLSD   61 (107)
Q Consensus         7 ~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d   61 (107)
                      +.-+++|+||||+.+++.++||+||++|+++||||+++.     .+.|+.|++||++|++
T Consensus        13 ~~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~   72 (88)
T d1iura_          13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK   72 (88)
T ss_dssp             SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH
Confidence            345799999999999999999999999999999999864     3479999999999964