Citrus Sinensis ID: 044280

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
MQCQPEYSVSQVLTFFLLLAFKCSVVAPTQLNHQLSEPHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPLRARVGAVSPVLFKNGGGCGACYKVRCLDKSICSRRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIYRRAPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASSSEWLQMNHVWGANWSIIGGPLKGPFSVKLATLSTGRTLSARAVIPSNWSPKATYTSRLNFSP
cccccccHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccHHcccccccccEEEEEEccccccccccEEEEEEccccccccccccccccccHHHHHHcccccccccHHccccccEEEEEcccccccccEEEEEEcccccEEEEEEEEEEcccccEEEEEEEEcccccEEEcccccccEEEEccccccccEEEEEEEccccEEEEEccccccccccccEEEccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEccccccccccccccccccccccccccccccccHHHHccccccccEEEEEEccccccccccEEEEEEccccccccccccccccccHHHHHHHHccccccHHHHccEEEEEEEEEcccccccEEEEEEccccccEEEEEEEEEccccccEEEEEEEEccccccEEcccccccccccccccccccEEEEEEEcccccEEEEccccccccccccEEEEEEEccc
mqcqpeysvSQVLTFFLLLAFKcsvvaptqlnhqlsephwlpatatwygspegdgsdggacgygslvdvkplrarvgavspvlfkngggcgacykvrcldksicsrravtiivtdecpggycsngrthfdlsgaaFGRMAIagesgelrnrgelpviyrrapckypgkniafhvnEGSTDYWLSLLVEFedgdgdvgsmhireassseWLQMNhvwganwsiiggplkgpfsvklatlstgrtlsaravipsnwspkatytsrlnfsp
MQCQPEYSVSQVLTFFLLLAFKCSVVAPTQLNHQLSEPHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPLRARVGAVspvlfkngggcgaCYKVRCLDKSICSRRAVTIivtdecpggycsnGRTHFDLSGAAFGRMAIAGesgelrnrgelPVIYRRAPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASSSEWLQMNHVWGANWSIIGGPLKGPFSVKLATLSTgrtlsaravipsnwspkatytsrlnfsp
MQCQPEYSVSQVLTFFLLLAFKCSVVAPTQLNHQLSEPHWLPATATWYGSPEgdgsdggacgygsLVDVKPLRARVGAVSPVLFKNGGGCGACYKVRCLDKSICSRRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIYRRAPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASSSEWLQMNHVWGANWSIIGGPLKGPFSVKLATLSTGRTLSARAVIPSNWSPKATYTSRLNFSP
*******SVSQVLTFFLLLAFKCSVVAPTQLNHQLSEPHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPLRARVGAVSPVLFKNGGGCGACYKVRCLDKSICSRRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIYRRAPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASSSEWLQMNHVWGANWSIIGGPLKGPFSVKLATLSTGRTLSARAVIPSNW**************
***********VLTFFLLLAFKCSVVAPTQLNHQLSEPHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPLRARVGAVSPVLFKNGGGCGACYKVRCLDKSICSRRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIYRRAPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASSSEWLQMNHVWGANWSIIGGPLKGPFSVKLATLSTGRTLSARAVIPSNWSPKATYTSRLNFS*
********VSQVLTFFLLLAFKCSVVAPTQLNHQLSEPHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPLRARVGAVSPVLFKNGGGCGACYKVRCLDKSICSRRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIYRRAPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASSSEWLQMNHVWGANWSIIGGPLKGPFSVKLATLSTGRTLSARAVIPSNWSPKATYTSRLNFSP
*QCQPEYSVSQVLTFFLLLAFKCSVVAPTQLNHQLSEPHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPLRARVGAVSPVLFKNGGGCGACYKVRCLDKSICSRRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIYRRAPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASSSEWLQMNHVWGANWSIIGGPLKGPFSVKLATLSTGRTLSARAVIPSNWSPKATYTSRLNFS*
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
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MQCQPEYSVSQVLTFFLLLAFKCSVVAPTQLNHQLSEPHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPLRARVGAVSPVLFKNGGGCGACYKVRCLDKSICSRRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIYRRAPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASSSEWLQMNHVWGANWSIIGGPLKGPFSVKLATLSTGRTLSARAVIPSNWSPKATYTSRLNFSP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query268 2.2.26 [Sep-21-2011]
Q9M0I2264 Expansin-B3 OS=Arabidopsi yes no 0.940 0.954 0.765 1e-113
Q9SKU2271 Expansin-B1 OS=Arabidopsi no no 1.0 0.988 0.684 1e-105
Q0DZ85272 Expansin-B16 OS=Oryza sat yes no 0.876 0.863 0.736 1e-101
Q7X6J9278 Expansin-B17 OS=Oryza sat no no 0.858 0.827 0.734 1e-100
Q9SHY6273 Putative expansin-B2 OS=A no no 0.854 0.838 0.476 4e-63
Q7XT39275 Expansin-B5 OS=Oryza sati no no 0.843 0.821 0.469 6e-58
Q6H677273 Putative expansin-B14 OS= no no 0.940 0.923 0.432 2e-56
Q9M203264 Expansin-B5 OS=Arabidopsi no no 0.925 0.939 0.421 2e-56
Q5W6Z9264 Expansin-B18 OS=Oryza sat no no 0.929 0.943 0.435 3e-56
Q6H676292 Expansin-B11 OS=Oryza sat no no 0.802 0.736 0.486 1e-55
>sp|Q9M0I2|EXPB3_ARATH Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2 Back     alignment and function desciption
 Score =  409 bits (1051), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/256 (76%), Positives = 216/256 (84%), Gaps = 4/256 (1%)

Query: 13  LTFFLLLAFKCSVVAPTQLNHQLSEPHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPL 72
           L   L L    S +A T  N  +S  HWLPA ATWYGSP GDGSDGGACGYG+LVDVKPL
Sbjct: 11  LCIVLQLLIGSSALATT--NRHVSNSHWLPAVATWYGSPNGDGSDGGACGYGTLVDVKPL 68

Query: 73  RARVGAVSPVLFKNGGGCGACYKVRCLDKSICSRRAVTIIVTDECPGGYCSNGRTHFDLS 132
            ARVGAV+P+LFKNG GCGACYKVRCLDKSICSRRAVT+I+TDECPG  CS   THFDLS
Sbjct: 69  HARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITDECPG--CSKTSTHFDLS 126

Query: 133 GAAFGRMAIAGESGELRNRGELPVIYRRAPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDG 192
           GA FGR+AIAGESG LRNRG +PVIYRR  CKY GKNIAFHVNEGSTD+WLSLLVEFEDG
Sbjct: 127 GAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLVEFEDG 186

Query: 193 DGDVGSMHIREASSSEWLQMNHVWGANWSIIGGPLKGPFSVKLATLSTGRTLSARAVIPS 252
           +GD+GSMHIR+A + EWL+M HVWGANW IIGGPLKGPFS+KL TLS G+TLSA  V+P 
Sbjct: 187 EGDIGSMHIRQAGAREWLEMKHVWGANWCIIGGPLKGPFSIKLTTLSAGKTLSATDVVPR 246

Query: 253 NWSPKATYTSRLNFSP 268
           NW+PKATY+SRLNFSP
Sbjct: 247 NWAPKATYSSRLNFSP 262
May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SKU2|EXPB1_ARATH Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 SV=1 Back     alignment and function description
>sp|Q0DZ85|EXB16_ORYSJ Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1 Back     alignment and function description
>sp|Q7X6J9|EXB17_ORYSJ Expansin-B17 OS=Oryza sativa subsp. japonica GN=EXPB17 PE=3 SV=2 Back     alignment and function description
>sp|Q9SHY6|EXPB2_ARATH Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=3 SV=2 Back     alignment and function description
>sp|Q7XT39|EXPB5_ORYSJ Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2 Back     alignment and function description
>sp|Q6H677|EXB14_ORYSJ Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1 Back     alignment and function description
>sp|Q9M203|EXPB5_ARATH Expansin-B5 OS=Arabidopsis thaliana GN=EXPB5 PE=2 SV=2 Back     alignment and function description
>sp|Q5W6Z9|EXB18_ORYSJ Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1 Back     alignment and function description
>sp|Q6H676|EXB11_ORYSJ Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
255553797259 Beta-expansin 3 precursor, putative [Ric 0.958 0.992 0.837 1e-125
449444350269 PREDICTED: expansin-B3-like [Cucumis sat 0.992 0.988 0.786 1e-120
224124548237 hypothetical protein POPTRDRAFT_243090 [ 0.884 1.0 0.856 1e-119
359485502259 PREDICTED: expansin-B3-like [Vitis vinif 0.936 0.969 0.812 1e-118
449438082269 PREDICTED: expansin-B3-like [Cucumis sat 0.996 0.992 0.743 1e-115
224127162267 hypothetical protein POPTRDRAFT_836962 [ 0.944 0.947 0.817 1e-115
297799148264 ATEXPB3 [Arabidopsis lyrata subsp. lyrat 0.977 0.992 0.727 1e-112
18417157264 expansin B3 [Arabidopsis thaliana] gi|20 0.940 0.954 0.765 1e-112
21592834258 putative beta-expansin/allergen protein 0.940 0.976 0.765 1e-112
256561133263 expansin B1 [Raphanus sativus] gi|256561 0.932 0.950 0.758 1e-111
>gi|255553797|ref|XP_002517939.1| Beta-expansin 3 precursor, putative [Ricinus communis] gi|223542921|gb|EEF44457.1| Beta-expansin 3 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/258 (83%), Positives = 234/258 (90%), Gaps = 1/258 (0%)

Query: 11  QVLTFFLLLAFKCSVVAPTQLNHQLSEPHWLPATATWYGSPEGDGSDGGACGYGSLVDVK 70
           Q L  ++++  KC VV   Q++H++++ HW PATATWYGSP+GDGSDGGACGYGSLVDVK
Sbjct: 2   QFLALYIVVFLKCFVVY-GQVHHRVTDLHWKPATATWYGSPDGDGSDGGACGYGSLVDVK 60

Query: 71  PLRARVGAVSPVLFKNGGGCGACYKVRCLDKSICSRRAVTIIVTDECPGGYCSNGRTHFD 130
           PL+ARVGAVSP+LFKNG GCGACYKV+CLDKSICSRRAVTIIVTDECPGGYCSNGRTHFD
Sbjct: 61  PLKARVGAVSPILFKNGEGCGACYKVKCLDKSICSRRAVTIIVTDECPGGYCSNGRTHFD 120

Query: 131 LSGAAFGRMAIAGESGELRNRGELPVIYRRAPCKYPGKNIAFHVNEGSTDYWLSLLVEFE 190
           LSGAAFGRMAI GESG+LRNRGELPV YRR PCKYPGKNIAFHVNEGST+YWLSLLVEFE
Sbjct: 121 LSGAAFGRMAITGESGQLRNRGELPVTYRRTPCKYPGKNIAFHVNEGSTNYWLSLLVEFE 180

Query: 191 DGDGDVGSMHIREASSSEWLQMNHVWGANWSIIGGPLKGPFSVKLATLSTGRTLSARAVI 250
           DGDGDVGSMHIREA  SEWL+MNH+WGANW IIGGPLKGPFSVKL TLSTGR LSAR VI
Sbjct: 181 DGDGDVGSMHIREAGGSEWLEMNHLWGANWCIIGGPLKGPFSVKLTTLSTGRGLSARDVI 240

Query: 251 PSNWSPKATYTSRLNFSP 268
           P NWSPKATYTSRL F P
Sbjct: 241 PRNWSPKATYTSRLKFYP 258

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449444350|ref|XP_004139938.1| PREDICTED: expansin-B3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224124548|ref|XP_002319359.1| hypothetical protein POPTRDRAFT_243090 [Populus trichocarpa] gi|222857735|gb|EEE95282.1| hypothetical protein POPTRDRAFT_243090 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359485502|ref|XP_002267127.2| PREDICTED: expansin-B3-like [Vitis vinifera] gi|297739116|emb|CBI28767.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449438082|ref|XP_004136819.1| PREDICTED: expansin-B3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224127162|ref|XP_002329415.1| hypothetical protein POPTRDRAFT_836962 [Populus trichocarpa] gi|222870465|gb|EEF07596.1| hypothetical protein POPTRDRAFT_836962 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297799148|ref|XP_002867458.1| ATEXPB3 [Arabidopsis lyrata subsp. lyrata] gi|297313294|gb|EFH43717.1| ATEXPB3 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18417157|ref|NP_567803.1| expansin B3 [Arabidopsis thaliana] gi|20138391|sp|Q9M0I2.2|EXPB3_ARATH RecName: Full=Expansin-B3; Short=At-EXPB3; Short=AtEXPB3; AltName: Full=Ath-ExpBeta-1.6; AltName: Full=Beta-expansin-3; Flags: Precursor gi|14532724|gb|AAK64163.1| putative beta-expansin/allergen protein [Arabidopsis thaliana] gi|22136782|gb|AAM91735.1| putative beta-expansin/allergen protein [Arabidopsis thaliana] gi|195604892|gb|ACG24276.1| beta-expansin 3 precursor [Zea mays] gi|332660058|gb|AEE85458.1| expansin B3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21592834|gb|AAM64784.1| putative beta-expansin/allergen protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|256561133|gb|ACU86966.1| expansin B1 [Raphanus sativus] gi|256561135|gb|ACU86967.1| expansin B1 [Raphanus sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
TAIR|locus:2123643264 EXPB3 "expansin B3" [Arabidops 0.940 0.954 0.718 1.2e-99
TAIR|locus:2051338271 EXPB1 "expansin B1" [Arabidops 1.0 0.988 0.639 1e-91
TAIR|locus:2018521273 EXPB2 "expansin B2" [Arabidops 0.932 0.915 0.413 1.1e-53
TAIR|locus:2055594259 EXPB4 "expansin B4" [Arabidops 0.832 0.861 0.4 9.1e-45
TAIR|locus:4515102723223 EXPB6 "AT1G65681" [Arabidopsis 0.727 0.874 0.436 4.5e-43
TAIR|locus:2034680262 EXPA7 "expansin A7" [Arabidops 0.802 0.820 0.316 1.9e-26
TAIR|locus:2090161252 EXPA12 "expansin 12" [Arabidop 0.791 0.841 0.347 4e-26
TAIR|locus:2130444250 EXLB1 "expansin-like B1" [Arab 0.880 0.944 0.317 4.6e-25
TAIR|locus:2015539257 EXPA18 "expansin A18" [Arabido 0.805 0.840 0.313 1.2e-24
TAIR|locus:2056670253 EXPA15 "expansin A15" [Arabido 0.783 0.830 0.336 3.3e-24
TAIR|locus:2123643 EXPB3 "expansin B3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
 Identities = 184/256 (71%), Positives = 203/256 (79%)

Query:    13 LTFFLLLAFKCSVVAPTQLNHQLSEPHWLPATATWYGSPEXXXXXXXXXXXXXLVDVKPL 72
             L   L L    S +A T  N  +S  HWLPA ATWYGSP              LVDVKPL
Sbjct:    11 LCIVLQLLIGSSALATT--NRHVSNSHWLPAVATWYGSPNGDGSDGGACGYGTLVDVKPL 68

Query:    73 RARVGAVSPVLFKNGGGCGACYKVRCLDKSICSRRAVTIIVTDECPGGYCSNGRTHFDLS 132
              ARVGAV+P+LFKNG GCGACYKVRCLDKSICSRRAVT+I+TDECPG  CS   THFDLS
Sbjct:    69 HARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITDECPG--CSKTSTHFDLS 126

Query:   133 GAAFGRMAIAGESGELRNRGELPVIYRRAPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDG 192
             GA FGR+AIAGESG LRNRG +PVIYRR  CKY GKNIAFHVNEGSTD+WLSLLVEFEDG
Sbjct:   127 GAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLVEFEDG 186

Query:   193 DGDVGSMHIREASSSEWLQMNHVWGANWSIIGGPLKGPFSVKLATLSTGRTLSARAVIPS 252
             +GD+GSMHIR+A + EWL+M HVWGANW IIGGPLKGPFS+KL TLS G+TLSA  V+P 
Sbjct:   187 EGDIGSMHIRQAGAREWLEMKHVWGANWCIIGGPLKGPFSIKLTTLSAGKTLSATDVVPR 246

Query:   253 NWSPKATYTSRLNFSP 268
             NW+PKATY+SRLNFSP
Sbjct:   247 NWAPKATYSSRLNFSP 262
GO:0005576 "extracellular region" evidence=ISM;IEA
GO:0009664 "plant-type cell wall organization" evidence=ISS
GO:0009826 "unidimensional cell growth" evidence=ISS;NAS
GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS
GO:0019953 "sexual reproduction" evidence=IEA
GO:0006949 "syncytium formation" evidence=IEP
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2051338 EXPB1 "expansin B1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018521 EXPB2 "expansin B2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2055594 EXPB4 "expansin B4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4515102723 EXPB6 "AT1G65681" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034680 EXPA7 "expansin A7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090161 EXPA12 "expansin 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130444 EXLB1 "expansin-like B1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015539 EXPA18 "expansin A18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056670 EXPA15 "expansin A15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M0I2EXPB3_ARATHNo assigned EC number0.76560.94020.9545yesno
Q7X6J9EXB17_ORYSJNo assigned EC number0.73470.85820.8273nono
Q0DZ85EXB16_ORYSJNo assigned EC number0.73610.87680.8639yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
PLN03023247 PLN03023, PLN03023, Expansin-like B1; Provisional 4e-44
PLN00050247 PLN00050, PLN00050, expansin A; Provisional 2e-35
pfam0135782 pfam01357, Pollen_allerg_1, Pollen allergen 8e-35
PLN00193256 PLN00193, PLN00193, expansin-A; Provisional 9e-32
pfam0333077 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like 1e-18
smart0083787 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like 1e-11
PLN03024125 PLN03024, PLN03024, Putative EG45-like domain cont 0.001
PLN00115118 PLN00115, PLN00115, pollen allergen group 3; Provi 0.004
>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional Back     alignment and domain information 
 Score =  149 bits (377), Expect = 4e-44
 Identities = 82/228 (35%), Positives = 120/228 (52%), Gaps = 15/228 (6%)

Query: 45  ATWYGSPEGDGSDGGACGYGSL-VDVKPLRARVGAVSPVLFKNGGGCGACYKVRCLDKSI 103
           AT+YGSP+  G+  GACG+G     V      V  VS  L++NG GCGACY+VRC   ++
Sbjct: 30  ATYYGSPDCLGTPTGACGFGEYGRTVN--GGNVAGVSR-LYRNGTGCGACYQVRCKAPNL 86

Query: 104 CSRRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIYRRAPC 163
           CS   V ++VTD   G       T F LS  A+ R+A    + EL   G + V YRR PC
Sbjct: 87  CSDDGVNVVVTDYGEGDK-----TDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPC 141

Query: 164 KYPGKNIAFHVNEGS--TDYWLSLLVEFEDGDGDVGSMHIREASSSEWLQMNHVWGANWS 221
           +Y G N+ F V+E S   DY L++++ ++ G  D+ ++ I +    EW  M   +GA W 
Sbjct: 142 RYAGYNLFFKVHEHSRFPDY-LAIVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWD 200

Query: 222 IIGGPLKGPFSVKLATLSTGRT--LSARAVIPSNWSPKATYTSRLNFS 267
            +  P KGP +++     +     + A+ VIPS+W     Y S +   
Sbjct: 201 -MPNPPKGPITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSNIQLD 247

Length = 247
>gnl|CDD|165628 PLN00050, PLN00050, expansin A; Provisional Back     alignment and domain information
>gnl|CDD|216453 pfam01357, Pollen_allerg_1, Pollen allergen Back     alignment and domain information
>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional Back     alignment and domain information
>gnl|CDD|217497 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|178595 PLN03024, PLN03024, Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information
>gnl|CDD|177729 PLN00115, PLN00115, pollen allergen group 3; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 268
PLN00193256 expansin-A; Provisional 100.0
PLN03023247 Expansin-like B1; Provisional 100.0
PLN00050247 expansin A; Provisional 100.0
COG4305232 Endoglucanase C-terminal domain/subunit and relate 99.97
PLN03024125 Putative EG45-like domain containing protein 1; Pr 99.93
PLN00115118 pollen allergen group 3; Provisional 99.92
PF0135782 Pollen_allerg_1: Pollen allergen; InterPro: IPR007 99.91
smart0083787 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b 99.87
PF0333078 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi 99.76
PF00967119 Barwin: Barwin family; InterPro: IPR001153 Barwin 99.06
PF07249119 Cerato-platanin: Cerato-platanin; InterPro: IPR010 98.33
TIGR00413208 rlpA rare lipoprotein A. This is a family of proka 97.45
COG0797233 RlpA Lipoproteins [Cell envelope biogenesis, outer 97.15
PRK10672361 rare lipoprotein A; Provisional 96.44
PF02015201 Glyco_hydro_45: Glycosyl hydrolase family 45; Inte 94.23
>PLN00193 expansin-A; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.9e-62  Score=439.85  Aligned_cols=239  Identities=33%  Similarity=0.712  Sum_probs=209.5

Q ss_pred             HHHHHHHHHHhhcccCCccccccCCCCCeeeEEEEEcCCCCCCCCCcCCCCCCcCCCCCCCCCeEEEcChhhcCCCCCCC
Q 044280           12 VLTFFLLLAFKCSVVAPTQLNHQLSEPHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPLRARVGAVSPVLFKNGGGCG   91 (268)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~g~g~~~GaCGyg~~~~~~p~~~~~aA~s~~~~~~g~~CG   91 (268)
                      +|.|.+|+-|+|.+..   +......++|++++|||||.+++.++.+|||||| +....+++.++||+|+++|++|++||
T Consensus         5 ~~~~~~~~~~~~~~~~---~~~~~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg-~l~~~~~g~~~AAls~~lf~~G~~CG   80 (256)
T PLN00193          5 LLGLAILLQFCCYLFI---NVNAFTPSGWTKAHATFYGGSDASGTMGGACGYG-NLYSTGYGTRTAALSTALFNDGASCG   80 (256)
T ss_pred             hHHHHHHHHHHHHHHh---hccCcCCCCceeeEEEEcCCCCCCCCCCcccCCC-CccccCCCceeeecCHhHccCCcccc
Confidence            4556666666664422   2234456689999999999999888899999995 55567889999999999999999999


Q ss_pred             ceEEEEeC---CCCCccCC-cEEEEEEccCCCC---------CCCCCCCceeeCHHHHhhhhhcCCccccccCCeecEEE
Q 044280           92 ACYKVRCL---DKSICSRR-AVTIIVTDECPGG---------YCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIY  158 (268)
Q Consensus        92 ~C~~V~c~---~~~~C~~~-sv~V~VtD~Cp~~---------~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w  158 (268)
                      +||||+|.   ++..|.++ +|+|+|||.||++         ||.+++.|||||.+||.+||.       +..|+++|+|
T Consensus        81 aCyev~C~~~~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~-------~~~Giv~V~y  153 (256)
T PLN00193         81 QCYRIMCDYQADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGI-------YRGGIVPVLF  153 (256)
T ss_pred             CeEEEECCCCCCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeEeEEE
Confidence            99999995   45579765 8999999999962         899888999999999999996       4799999999


Q ss_pred             EEEeeCCCCcceEEEEccCCCCceEEEEEEeeCCCCCeeEEEEEecCCCCeEEccccCCceEEEcCCCCCcceEEEEEEC
Q 044280          159 RRAPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASSSEWLQMNHVWGANWSIIGGPLKGPFSVKLATL  238 (268)
Q Consensus       159 ~~V~C~~~g~ni~~~vk~Gss~~w~ai~v~n~~g~~~I~sVei~~~g~~~w~~m~r~~gn~W~~~~~~~~~p~~lRiTs~  238 (268)
                      |+|+|+++| ||+|++++  ++||++++|.|++|+++|++|+|++++ ++|++|+|+||++|+++..+...||+||||+ 
T Consensus       154 rRVpC~~~G-~i~f~v~g--n~y~~~vlv~nv~G~gdV~~v~Ik~~~-~~W~~M~R~wGa~W~~~~~l~g~plsfRvts-  228 (256)
T PLN00193        154 QRVPCKKHG-GVRFTING--RDYFELVLISNVGGAGSIQSVSIKGSK-TGWMAMSRNWGANWQSNAYLDGQSLSFKVTT-  228 (256)
T ss_pred             EEeccccCC-CcEEEEcC--CccEEEEEEEEeCCCccEEEEEEecCC-CCeeECcccccceeEecCCCCCCCEEEEEEE-
Confidence            999999999 99999984  899999999999999999999999875 5899999999999999644445599999999 


Q ss_pred             cCCeEEEEccccCCCCCCCeEEecCCCC
Q 044280          239 STGRTLSARAVIPSNWSPKATYTSRLNF  266 (268)
Q Consensus       239 ~~G~~v~~~~vip~~~~~g~~y~t~~QF  266 (268)
                      .+|+++++.||||++|++|++|++.+||
T Consensus       229 ~~G~~~~~~~viPa~W~~G~ty~s~vqf  256 (256)
T PLN00193        229 TDGQTRFFLNVVPANWGFGQTFSSSVQF  256 (256)
T ss_pred             cCCeEEEECceeCCCCCCCCeEecCccC
Confidence            9999999999999999999999999998

>PLN03023 Expansin-like B1; Provisional Back     alignment and domain information
>PLN00050 expansin A; Provisional Back     alignment and domain information
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03024 Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information
>PLN00115 pollen allergen group 3; Provisional Back     alignment and domain information
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants [] Back     alignment and domain information
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures Back     alignment and domain information
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds Back     alignment and domain information
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family Back     alignment and domain information
>TIGR00413 rlpA rare lipoprotein A Back     alignment and domain information
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10672 rare lipoprotein A; Provisional Back     alignment and domain information
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
2hcz_X245 Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans 6e-41
1n10_A241 Crystal Structure Of Phl P 1, A Major Timothy Grass 5e-38
1bmw_A96 A Fibronectin Type Iii Fold In Plant Allergens: The 2e-05
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245 Back     alignment and structure 
Iteration: 1

 Score =  164 bits (414), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 92/231 (39%), Positives = 130/231 (56%), Gaps = 7/231 (3%)
Query: 39  HWLPATATWYGSPEXXXXXXXXXX-XXXLVDVKPLRARVGAVSPVLFKNGGGCGACYKVR 97
            WL A ATWYG P                V++ P        +  +FK+G GCG+CY+VR
Sbjct: 18  KWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVR 77
Query: 98  CLDKSICSRRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVI 157
           C +K  CS   VT+ +TD     Y      HFDLSG AFG +A  G + ++R+ G + V 
Sbjct: 78  CKEKPECSGNPVTVYITDM---NYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVE 134
Query: 158 YRRAPCKYP-GKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASSSEWLQMNHVW 216
           +RR  CKYP G+ I FH+ +G    +L++LV++   DGD+  M I++  S+EW  M   W
Sbjct: 135 FRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSW 194
Query: 217 GANWSI-IGGPLKGPFSVKLATLSTGRTLSARAVIPSNWSPKATYTSRLNF 266
           GA W +     LKGPFS++L T  +G+ + A+ VIP+NW P A YTS + F
Sbjct: 195 GAIWRMDTAKALKGPFSIRL-TSESGKKVIAKDVIPANWRPDAVYTSNVQF 244
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241 Back     alignment and structure
>pdb|1BMW|A Chain A, A Fibronectin Type Iii Fold In Plant Allergens: The Solution Structure Of Phl Pii From Timothy Grass Pollen, Nmr, 38 Structures Length = 96 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 9e-70
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 5e-66
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 7e-53
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 3e-33
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 4e-33
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 1e-28
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 9e-11
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245 Back     alignment and structure
 Score =  214 bits (546), Expect = 9e-70
 Identities = 99/245 (40%), Positives = 140/245 (57%), Gaps = 9/245 (3%)

Query: 26  VAPTQLNHQLSEPHWLPATATWYGSPEGDGSD--GGACGYGSLVDVKPLRARVGAVSPVL 83
           V P           WL A ATWYG P G G+   GGACG  ++ ++ P        +  +
Sbjct: 5   VPPGPNITTNYNGKWLTARATWYGQPNGAGAPDNGGACGIKNV-NLPPYSGMTACGNVPI 63

Query: 84  FKNGGGCGACYKVRCLDKSICSRRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAIAG 143
           FK+G GCG+CY+VRC +K  CS   VT+ +TD            HFDLSG AFG +A  G
Sbjct: 64  FKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNY---EPIAPYHFDLSGKAFGSLAKPG 120

Query: 144 ESGELRNRGELPVIYRRAPCKYP-GKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIR 202
            + ++R+ G + V +RR  CKYP G+ I FH+ +G    +L++LV++   DGD+  M I+
Sbjct: 121 LNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQ 180

Query: 203 EASSSEWLQMNHVWGANWSI-IGGPLKGPFSVKLATLSTGRTLSARAVIPSNWSPKATYT 261
           +  S+EW  M   WGA W +     LKGPFS++L T  +G+ + A+ VIP+NW P A YT
Sbjct: 181 DKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRL-TSESGKKVIAKDVIPANWRPDAVYT 239

Query: 262 SRLNF 266
           S + F
Sbjct: 240 SNVQF 244
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100 Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108 Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96 Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Length = 181 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 100.0
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 100.0
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 100.0
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 99.96
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 99.94
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 99.94
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 99.91
1bw3_A125 Barwin, basic barley SEED protein; lectin; NMR {Ho 99.63
4avr_A95 PA4485; unknown function, GRAM-negative bacteria, 99.18
2kqa_A129 Cerato-platanin; elicitor, secreted, toxin; NMR {C 98.23
3m3g_A120 EPL1 protein; fungal, plant defense, fungus, polys 98.19
3sul_A122 Cerato-platanin-like protein; double PSI beta barr 98.13
3suj_A127 Cerato-platanin 1; double PSI beta barrel, unknown 98.12
3sum_A136 Cerato-platanin-like protein; double PSI beta barr 98.08
3suk_A125 Cerato-platanin-like protein; double PSI beta barr 98.08
2eng_A210 Endoglucanase V; cellulose degradation, hydrolase 95.41
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Back     alignment and structure
Probab=100.00  E-value=3.2e-66  Score=463.42  Aligned_cols=237  Identities=41%  Similarity=0.825  Sum_probs=217.2

Q ss_pred             ccCCccccccCCCCCeeeEEEEEcCCCCCCCC--CcCCCCCCcCCCCCCCCCeEEEcChhhcCCCCCCCceEEEEeCCCC
Q 044280           25 VVAPTQLNHQLSEPHWLPATATWYGSPEGDGS--DGGACGYGSLVDVKPLRARVGAVSPVLFKNGGGCGACYKVRCLDKS  102 (268)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~g~aT~Yg~~~g~g~--~~GaCGyg~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~~  102 (268)
                      .+.|+..+...+.++|+.|+||||+.+++.|+  .+|||||+ +....|++.++||+|..+|++|+.||+||||+|.+++
T Consensus         4 ~~~~~~~~~~~~~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg-~~~~~p~~~~~aAls~~lf~~G~~CG~Cy~V~c~~~~   82 (245)
T 2hcz_X            4 KVPPGPNITTNYNGKWLTARATWYGQPNGAGAPDNGGACGIK-NVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKP   82 (245)
T ss_dssp             CCCCCCCCCSCCCCCCEEEEEEECSCTTSCSSTTSCCTTCCC-CTTSTTTTTCEEEECHHHHGGGTSTTCEEEEECCSSS
T ss_pred             CCCCCCCCCcccCCceeeeEEEEeCCCCCCCcCCCCccCCCC-CCCcCCCCCEEEEeCHHHcCCchhcCCeEEEEeCCCC
Confidence            45666666666788999999999999987776  68999994 6667788999999999999999999999999999888


Q ss_pred             CccCCcEEEEEEccCCCCCCCCCCCceeeCHHHHhhhhhcCCccccccCCeecEEEEEEeeCCCC-cceEEEEccCCCCc
Q 044280          103 ICSRRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIYRRAPCKYPG-KNIAFHVNEGSTDY  181 (268)
Q Consensus       103 ~C~~~sv~V~VtD~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~g-~ni~~~vk~Gss~~  181 (268)
                      .|++++|+|+|||+|+   |..++.|||||+.||.+||.+++++++++.|+++|+||+|+|+++| .||+|++++||++|
T Consensus        83 ~C~~~sv~V~VtD~C~---C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~ni~f~v~~Gs~~~  159 (245)
T 2hcz_X           83 ECSGNPVTVYITDMNY---EPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPN  159 (245)
T ss_dssp             SBCSSCEEEEEEEECC---CTTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEEEEEEEECCCCSTTCCCEEEECCCCSSS
T ss_pred             ccCCCCEEEEEEeccC---CCCCCccEEcCHHHHHHHhccccccccccCCEEEEEEEEEecCCCCCCcEEEEEcCCCCcc
Confidence            8999999999999998   7556799999999999999988888888999999999999999983 48999999999999


Q ss_pred             eEEEEEEeeCCCCCeeEEEEEecCCCCeEEccccCCceEEEcCC-CCCcceEEEEEECcCCeEEEEccccCCCCCCCeEE
Q 044280          182 WLSLLVEFEDGDGDVGSMHIREASSSEWLQMNHVWGANWSIIGG-PLKGPFSVKLATLSTGRTLSARAVIPSNWSPKATY  260 (268)
Q Consensus       182 w~ai~v~n~~g~~~I~sVei~~~g~~~w~~m~r~~gn~W~~~~~-~~~~p~~lRiTs~~~G~~v~~~~vip~~~~~g~~y  260 (268)
                      |++|+|.|++|.++|++|||+++++..|++|+|+|||+|+++.. ++++||+||||+ .+||+|+++||||++|++|++|
T Consensus       160 ~~avlv~n~~g~g~V~~V~ik~~~~~~W~~m~r~~G~~W~~~~~~~l~gpls~RvT~-~~G~~v~~~nViP~~w~~g~ty  238 (245)
T 2hcz_X          160 YLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTS-ESGKKVIAKDVIPANWRPDAVY  238 (245)
T ss_dssp             CCCEEEECCCTTCCEEEEEBCCSSSCSCBCCEEEETTEEECSCCSSCCSSCCEEEEE-TTSCEEEESCSCCSSCCTTCEE
T ss_pred             eEEEEEEecCCCCCEEEEEEEeCCCCceeECccCCCCEEEECCCCCCCCCEEEEEEE-eCCcEEEEeeeecCCCCCCCEE
Confidence            99999999999999999999998777999999999999999644 367899999999 9999999999999999999999


Q ss_pred             ecCCCC
Q 044280          261 TSRLNF  266 (268)
Q Consensus       261 ~t~~QF  266 (268)
                      ++.+||
T Consensus       239 ~~~~qf  244 (245)
T 2hcz_X          239 TSNVQF  244 (245)
T ss_dssp             ECSCCC
T ss_pred             eCcccc
Confidence            999999
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Back     alignment and structure
>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A Back     alignment and structure
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01} Back     alignment and structure
>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani} Back     alignment and structure
>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens} Back     alignment and structure
>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa} Back     alignment and structure
>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa} Back     alignment and structure
>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 268
d1n10a2143 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t 3e-43
d1n10a195 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T 2e-35
d1whoa_94 b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten 4e-30
d1wc2a1180 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu 1e-25
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143 Back     information, alignment and structure

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score =  142 bits (358), Expect = 3e-43
 Identities = 55/131 (41%), Positives = 73/131 (55%), Gaps = 6/131 (4%)

Query: 39  HWLPATATWYGSPEGDGSD--GGACGYGSLVDVKPLRARVGAVSPVLFKNGGGCGACYKV 96
            WL A +TWYG P G G    GGACGY  + D  P     G  +  +FK+G GCG+C+++
Sbjct: 16  KWLDAKSTWYGKPTGAGPKDNGGACGYKDV-DKPPFSGMTGCGNTPIFKSGRGCGSCFEI 74

Query: 97  RCLDKSICSRRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPV 156
           +C     CS   V + +TD+           HFDLSG AFG MA  G+  +LR+ GEL +
Sbjct: 75  KCTKPEACSGEPVVVHITDDNE---EPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELEL 131

Query: 157 IYRRAPCKYPG 167
            +RR  CKYP 
Sbjct: 132 QFRRVKCKYPE 142
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95 Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94 Back     information, alignment and structure
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
d1n10a2143 Pollen allergen PHL P 1 N-terminal domain {Timothy 100.0
d1wc2a1180 Endoglucanase (CMCase) {Blue mussel (Mytilus eduli 99.96
d1n10a195 PHL P 1 C-terminal domain {Timothy grass (Phleum p 99.96
d1whoa_94 PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1 99.94
d1bw3a_125 Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} 98.65
d2enga_210 Endoglucanase V (Eng V) {Humicola insolens [TaxId: 94.61
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=2e-37  Score=254.59  Aligned_cols=137  Identities=42%  Similarity=0.848  Sum_probs=113.7

Q ss_pred             CCccccccCCCCCeeeEEEEEcCCCCCCCC--CcCCCCCCcCCCCCCCCCeEEEcChhhcCCCCCCCceEEEEeCCCCCc
Q 044280           27 APTQLNHQLSEPHWLPATATWYGSPEGDGS--DGGACGYGSLVDVKPLRARVGAVSPVLFKNGGGCGACYKVRCLDKSIC  104 (268)
Q Consensus        27 ~~~~~~~~~~~~~~~~g~aT~Yg~~~g~g~--~~GaCGyg~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C  104 (268)
                      +|.......+.++|++|+||||+.+++.++  .+|||||+ ++...|++.++||+|..+|++|..||+||||+|.++..|
T Consensus         4 ~~~~~~~a~~~~~w~~g~AT~Yg~~~~~~~~~~gGACGyg-~~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~~~~c   82 (143)
T d1n10a2           4 PPGPNITATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYK-DVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEAC   82 (143)
T ss_dssp             CCCSCCCCBCCCSCEEEEEEEEC----------CCTTCCC-CTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSSTTB
T ss_pred             CCCCCcccccCCCcEeeEEeEeCCCCCCCCCCCcccCCCC-CcccCCCcceEEEeCHhHccCCCcCCcceEeEcCCCCcc
Confidence            344444456789999999999998876543  47999994 666678899999999999999999999999999998899


Q ss_pred             cCCcEEEEEEccCCCCCCCCCCCceeeCHHHHhhhhhcCCccccccCCeecEEEEEEeeCCCC
Q 044280          105 SRRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIYRRAPCKYPG  167 (268)
Q Consensus       105 ~~~sv~V~VtD~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~g  167 (268)
                      .+++|+|+|||.||.  |. +.+|||||++||.+||.++++.++++.|+++|+||+|+|+++|
T Consensus        83 ~~~sv~V~vtd~c~~--~~-~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~~~g  142 (143)
T d1n10a2          83 SGEPVVVHITDDNEE--PI-APYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPE  142 (143)
T ss_dssp             CSCCEEEEEEEECSS--CS-SSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCT
T ss_pred             cCCCEEEEEEecccC--CC-CCccccCCHHHHhhhccccchhhheecCccceEEEEEeccCCC
Confidence            999999999999995  44 4589999999999999987666677899999999999999986
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]} Back     information, alignment and structure