Citrus Sinensis ID: 044284

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-
MNMWNPRENEQQQREGREKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKGKCHALRSATRPVPPVPTEPLTPRTRLLAEAAANAIRNYDEFSTAEMELTLSNSGRLSTESNFFSFYESLGLNMEGKSFDSPRASRGSINLTSLPELPSISNDSSGTSSSSQNMEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEERGKAKIKAAIEAAEAAQKIAKLEVQKRVNAEAKALKEAEEKRKLLDALWQSHMVLKYQSLFHILVVLILFYFYFTVLRKSF
cccccccccHHHHccccccEEEEEEcccccHHHHHHHHHHHccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEcccHHHHHHHHHHHccccEEEEcccccccccccccccccccccHHHHHHHHcccccEEEEEEcccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccccccccccHcccccccEEEEEEccccccHHHHHHHHHHHcccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHccccccHHHHHHccccccEEEEEEccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
mnmwnpreneqqQREGREKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKShsnnqysvgISEELIEQQQHDIHAMEVFlpfrcyctrrhiQCELVVLERQDVARALIEYVSQYGVEtmllgaptknglsrssfcrlfkasdtpgtvlkwapdfcNVYIVSKGKChalrsatrpvppvptepltprTRLLAEAAANAIRNYDEFSTAEMELTlsnsgrlstesNFFSFYESlglnmegksfdsprasrgsinltslpelpsisndssgtssssqnmeDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEERGKAKIKAAIEAAEAAQKIAKLEVQKRVNAEAKALKEAEEKRKLLDALWQSHMVLKYQSLFHILVVLILFYFYFTVLRKSF
mnmwnpreneqqqreGREKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKAsdtpgtvlkWAPDFCNVYIVSKGKCHALrsatrpvppvptepltpRTRLLAEAAANAIRNYDEFSTAEMELTLsnsgrlsteSNFFSFYESLGLNMEGKSFDSPRASRGSINltslpelpsisndssgtssssqnmedVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVelekwkmkeekrlketqmgeergKAKIKAAIEAAEAAQKIAKLEVQKRVNAEAKALKEAEEKRKLLDALWQSHMVLKYQSLFHILVVLILFYFYFTVLRKSF
MNMWNPreneqqqregreKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKGKCHALRSAtrpvppvptepltprtrllAEAAANAIRNYDEFSTAEMELTLSNSGRLSTESNFFSFYESLGLNMEGKSFDSPRASRGSINLTSLPELPsisndssgtssssQNMEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEERGkakikaaieaaeaaqkiakLEVQKRVNaeakalkeaeekrklldalWQSHMVLKYQSLFHILVVLILFYFYFTVLRKSF
*******************IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKGKCHALR********************LAEAAANAIRNYDEF*******************NFFSFYESL****************************************************************YNAAC**************************************************************************KLLDALWQSHMVLKYQSLFHILVVLILFYFYFTVL****
**********************VAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQK***********************HAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGL***********SDTPGTVLKWAPDFCNVYIVSKGKCHA***************************************************************************************************************************************************************************************************************************VLKYQSLFHILVVLILFYFYFTVLRKS*
****************REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKGKCHALRSATRPVPPVPTEPLTPRTRLLAEAAANAIRNYDEFSTAEMELTLSNSGRLSTESNFFSFYESLGLNMEGKSFDSPRASRGSINLTSLPELPS******************EDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEERGKAKIKAAIEAAEAAQKIAKLEVQKRVNAEAKALKEAEEKRKLLDALWQSHMVLKYQSLFHILVVLILFYFYFTVLRKSF
****************REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKGKCHALRSAT********************************************************************************************************EDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEERGKAKIKAAIEAAEAAQKIAKLEVQKRVNAEAKALKEAEEKRKLLDALWQSHMVLKYQSLFHILVVLILFYFYFTVLRKSF
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MNMWNPRENEQQQREGREKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKGKCHALRSATRPVPPVPTEPLTPRTRLLAEAAANAIRNYDEFSTAEMELTLSNSGRLSTESNFFSFYESLGLNMEGKSFDSPRASRGSINLTSLPELPSISNDSSGTSSSSQNxxxxxxxxxxxxxxxxxxxxxYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEERGKAKIKAAIEAAEAAQKIAxxxxxxxxxxxxxxxxxxxxxxxxxxxxWQSHMVLKYQSLFHILVVLILFYFYFTVLRKSF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query421 2.2.26 [Sep-21-2011]
Q9FKG6 845 U-box domain-containing p no no 0.850 0.423 0.241 2e-10
Q9FKG5 796 U-box domain-containing p no no 0.365 0.193 0.273 3e-09
Q9SW11 835 U-box domain-containing p no no 0.356 0.179 0.269 6e-09
Q9LU47 819 Putative U-box domain-con no no 0.798 0.410 0.252 2e-08
Q8S8S7 801 U-box domain-containing p no no 0.840 0.441 0.243 0.0002
>sp|Q9FKG6|PUB52_ARATH U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1 Back     alignment and function desciption
 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 197/455 (43%), Gaps = 97/455 (21%)

Query: 21  VAVAIDKDKFSQHALKWAADNILSRHQT-IKLVHV---IQKSHSNNQYSVGISE---ELI 73
           VAVAI+  K S++ + WA +  +    T  KL++V   +    +    +V +SE   +++
Sbjct: 24  VAVAINGKKKSKYVVFWALEKFIPEGFTDFKLLYVRPPVSYIPTPMGIAVAVSELREDVV 83

Query: 74  E--QQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAP 131
              +Q+ D  A E+  P++    RR +Q E+++L+  + A A+ E ++  GV  +++G  
Sbjct: 84  SAYKQELDWSANEMLRPYKKMFERRKVQVEVLLLDSLEPAAAIAEEIAGTGVTKLVIGMS 143

Query: 132 TKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKGKCHALRSA------------- 178
            +   SR          D    +    P FC VY++SKGK  ++R +             
Sbjct: 144 LRGFFSRKI--------DMSSLIATAVPRFCTVYVISKGKLASVRPSESDASGSIRFERS 195

Query: 179 -----TRPVPPVPTE----------------PLTPRTRLLAEAAANAIRNYD-------- 209
                +   P +P E                P +P   L     +NA+   D        
Sbjct: 196 SSTSGSTDSPRLPPEYQDFLSAVSEAQSRVSPFSP--ALKHSMGSNAVAQMDTSSSGTDQ 253

Query: 210 -EFSTAE-MELTLSN-SGRLSTESNF-FSF------YESLGLNMEGKSFDSPRASRGS-- 257
            E ST   ME+  S   G+ + + +F  SF      Y S+    + +  +  R  R S  
Sbjct: 254 EEVSTGRGMEIVHSGIEGKKNKDESFSASFPMGTEAYNSMSWTSKWRDHEDRREMRSSSS 313

Query: 258 ------INL---TSLPELPS-ISNDSSGTSSSSQNMEDVEDD-------VKRLKMELKQT 300
                 +N+     +PE  S +S+ +S  S    ++  + D+       +++L+ ELK  
Sbjct: 314 SNNHDLVNMDWGAVVPENYSWVSHTASHMSDGLLSVHSITDNQVNLNFEIEKLRAELKHV 373

Query: 301 MDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEE-------RGKAKIKAAIEAA 353
            +MY  A  E + A +K  EL + + +E ++L E +  EE       + K + + A++ A
Sbjct: 374 QEMYAMAQTETVGASKKLTELNQRRFEESEKLVELKEKEEVAKDTASKEKQRYEEAMKEA 433

Query: 354 EAAQKIAKLEVQKRVNAEAKALKEAEEKRKLLDAL 388
           E  +++   E   R  AE KA ++A EK KL  +L
Sbjct: 434 EKVKELMMKEALHRREAEFKAERDAREKDKLQASL 468
Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -
>sp|Q9FKG5|PUB51_ARATH U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51 PE=2 SV=2 Back     alignment and function description
>sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2 Back     alignment and function description
>sp|Q9LU47|PUB53_ARATH Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana GN=PUB53 PE=3 SV=1 Back     alignment and function description
>sp|Q8S8S7|PUB34_ARATH U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query421
359476012 796 PREDICTED: U-box domain-containing prote 0.900 0.476 0.431 5e-89
147797909 768 hypothetical protein VITISV_023046 [Viti 0.895 0.490 0.454 1e-88
255554402 802 ATP binding protein, putative [Ricinus c 0.935 0.491 0.422 2e-81
388522827403 unknown [Lotus japonicus] 0.909 0.950 0.403 6e-79
255566364322 kinase, putative [Ricinus communis] gi|2 0.717 0.937 0.487 2e-76
356509986 782 PREDICTED: U-box domain-containing prote 0.893 0.480 0.408 6e-74
356518294 782 PREDICTED: U-box domain-containing prote 0.895 0.482 0.412 4e-73
297808099396 predicted protein [Arabidopsis lyrata su 0.874 0.929 0.410 2e-72
296081801 1126 unnamed protein product [Vitis vinifera] 0.762 0.285 0.416 3e-72
297736025 616 unnamed protein product [Vitis vinifera] 0.890 0.608 0.420 9e-72
>gi|359476012|ref|XP_003631778.1| PREDICTED: U-box domain-containing protein 35-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  334 bits (857), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 199/461 (43%), Positives = 279/461 (60%), Gaps = 82/461 (17%)

Query: 3   MWNPRENEQQQREGREKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHV-IQKSHSN 61
           MW  R N  +++EG   +VAVAIDKDK SQ ALKWA DNIL+R QT+ L+HV +++SHS+
Sbjct: 1   MWLGRGN-TEKKEGGNPLVAVAIDKDKGSQSALKWAIDNILNRGQTVVLIHVKLKQSHSH 59

Query: 62  NQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQY 121
           + Y  G      E  + D +  E+FLPFRC+CTR+ IQC+ V+LE  DV +ALIEYVS  
Sbjct: 60  S-YPTGD-----EVAKLDHYTKELFLPFRCFCTRKDIQCKDVILEDTDVVKALIEYVSHS 113

Query: 122 GVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKGKCHALRSATRP 181
            +E +++GAP K G     F R FKA D PG++ K APDFC VY++SKGK  + RSA+R 
Sbjct: 114 AIEVLVVGAPAKGG-----FLRRFKAIDIPGSITKGAPDFCTVYVISKGKISSTRSASRA 168

Query: 182 VP----------------PVPTE---PLTPRTRLLAEAAANAI----------------- 205
            P                P P++   P  P +R +++   +A+                 
Sbjct: 169 APAISPLRNQIMNQGSIRPDPSDLPIPHAPSSRAISDDPISAVEKPPVEPPRSSHDDFEH 228

Query: 206 --------------RNYDEFSTAEMELTLSNSGRLSTESNFFSFYE------------SL 239
                         R+Y E S  + +++  +SGR ST+  F  FY+            S 
Sbjct: 229 IKSPFTRGARGPNGRSYGEISLPDSDISFVSSGRPSTDRMFPPFYDSNIDIIRSNPRLSN 288

Query: 240 GLNMEGKSFDSPRASRGSINLTSLPELPSISNDSSGTSSSSQNMEDVEDDVKRLKMELKQ 299
             +M+ ++F+S +  R S+ + S PE  +IS ++  TS SSQ+ EDVE +++RLK+ELKQ
Sbjct: 289 SSDMDNQTFESSQMGRKSMEIGSPPEFLAISQENDRTSWSSQSAEDVEAEMRRLKLELKQ 348

Query: 300 TMDMYNAACKEALAAKQKAVELEKWKMKEEK-------RLKETQMGEERGKAKIKAAIEA 352
           TMDMY+ ACKEAL+AKQKA EL++WK++EE+         +      ER KAK +AAIE 
Sbjct: 349 TMDMYSTACKEALSAKQKARELQRWKLEEEQRLEEARLAEEAALAIAEREKAKSRAAIEH 408

Query: 353 AEAAQKIAKLEVQKRVNAEAKALKEAEEKRKLLDALWQSHM 393
           AEAAQ+IA+LE QKR+NAE KA+KEAEEK+K+LD+L Q+ +
Sbjct: 409 AEAAQRIAELEAQKRINAEMKAIKEAEEKKKVLDSLAQTDV 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147797909|emb|CAN69465.1| hypothetical protein VITISV_023046 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255554402|ref|XP_002518240.1| ATP binding protein, putative [Ricinus communis] gi|223542587|gb|EEF44126.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388522827|gb|AFK49475.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|255566364|ref|XP_002524168.1| kinase, putative [Ricinus communis] gi|223536586|gb|EEF38231.1| kinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356509986|ref|XP_003523722.1| PREDICTED: U-box domain-containing protein 52-like [Glycine max] Back     alignment and taxonomy information
>gi|356518294|ref|XP_003527814.1| PREDICTED: U-box domain-containing protein 52-like [Glycine max] Back     alignment and taxonomy information
>gi|297808099|ref|XP_002871933.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297317770|gb|EFH48192.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|296081801|emb|CBI20806.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297736025|emb|CBI24063.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query421
TAIR|locus:2149244394 AT5G20310 "AT5G20310" [Arabido 0.726 0.776 0.394 2.9e-60
TAIR|locus:2061012 788 AT2G24370 [Arabidopsis thalian 0.406 0.217 0.472 2.8e-57
TAIR|locus:2128131 764 AT4G31230 [Arabidopsis thalian 0.365 0.201 0.431 8.4e-52
TAIR|locus:2015656 758 AT1G16760 [Arabidopsis thalian 0.391 0.217 0.448 3.8e-51
TAIR|locus:2087610 780 AT3G20200 [Arabidopsis thalian 0.344 0.185 0.484 4.1e-47
TAIR|locus:2182613 731 AT5G35380 [Arabidopsis thalian 0.344 0.198 0.462 1.3e-46
TAIR|locus:2063601 700 AT2G07020 [Arabidopsis thalian 0.339 0.204 0.440 6.1e-44
TAIR|locus:2143094 701 AT5G12000 [Arabidopsis thalian 0.337 0.202 0.367 1.7e-35
TAIR|locus:2180677 703 AT5G26150 [Arabidopsis thalian 0.327 0.196 0.335 5.8e-32
TAIR|locus:2007908 728 AT1G17540 [Arabidopsis thalian 0.351 0.203 0.396 3.8e-27
TAIR|locus:2149244 AT5G20310 "AT5G20310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 531 (192.0 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
 Identities = 133/337 (39%), Positives = 187/337 (55%)

Query:    21 VAVAIDKDKFSQ-HALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHD 79
             +A+AID+DK +   ALKWA D+ + R  T+KLVHVIQ+S  N        +E  E+Q +D
Sbjct:    11 IAIAIDRDKTTSCQALKWAVDHYIPRGGTVKLVHVIQRSALNISNGSHTDDESSERQSND 70

Query:    80 IHAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRS 139
                   FLP RC C RR+IQ E+V+LE QDVA+ALIEY+SQ  + T +LGA  K  ++R 
Sbjct:    71 KRTTAQFLPLRCLCMRRNIQSEIVLLEDQDVAKALIEYISQNCISTFILGASLKKSITR- 129

Query:   140 SFCRLFKASDTPGTVLKWAPDFCNVYIVSKGKCHALRSAXX-------XXXXXXXXXXXX 192
                 LFKA D P  V++WAPDFC V ++SKG+  ++R+A                     
Sbjct:   130 ----LFKADDIPSNVMRWAPDFCTVLVLSKGRLSSVRAATRPLPQVLPSSSSGTAPLSPR 185

Query:   193 XXXXXAEAAANAIRNYD----EFSTAEMELTLSNSGRLSTESNFFSFYESLGLN--MEGK 246
                  A +  +  R  D    EFS+ + + +++ S R ST+S+  +FYE L     +E  
Sbjct:   186 SNGDEAPSEMSLSREDDVFLEEFSSVDSDSSVNISNRFSTDSSVLAFYEKLAAPPMLEIP 245

Query:   247 SF---DSPRASRGSINLTSLPELPXXXXXXXXXXXXXQNMEDVEDDVKRLKMELKQTMDM 303
              F   D  +A + SI L SL +                 ++D   +++RLK ELK+TM+M
Sbjct:   246 RFSVLDDEKA-KFSIYLNSLSD-----EKNCTLASPLSPVDDATAEMRRLKKELKETMNM 299

Query:   304 YNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEE 340
             Y+AACKEAL  K++AVEL  WK K E R+   QM EE
Sbjct:   300 YHAACKEALMEKERAVELVMWKKKAELRI---QMAEE 333
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
TAIR|locus:2061012 AT2G24370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128131 AT4G31230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015656 AT1G16760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087610 AT3G20200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182613 AT5G35380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063601 AT2G07020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143094 AT5G12000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180677 AT5G26150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007908 AT1G17540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
cd01989146 cd01989, STK_N, The N-terminal domain of Eukaryoti 2e-55
cd00293130 cd00293, USP_Like, Usp: Universal stress protein f 1e-13
pfam00582139 pfam00582, Usp, Universal stress protein family 3e-08
TIGR02794346 TIGR02794, tolA_full, TolA protein 2e-05
TIGR02794 346 TIGR02794, tolA_full, TolA protein 2e-04
PRK09510 387 PRK09510, tolA, cell envelope integrity inner memb 2e-04
PRK09510 387 PRK09510, tolA, cell envelope integrity inner memb 2e-04
PRK09510 387 PRK09510, tolA, cell envelope integrity inner memb 3e-04
TIGR02794 346 TIGR02794, tolA_full, TolA protein 8e-04
TIGR02794 346 TIGR02794, tolA_full, TolA protein 0.001
PRK09510 387 PRK09510, tolA, cell envelope integrity inner memb 0.001
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 0.001
PRK00409 782 PRK00409, PRK00409, recombination and DNA strand e 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.003
>gnl|CDD|238947 cd01989, STK_N, The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information 
 Score =  180 bits (458), Expect = 2e-55
 Identities = 72/151 (47%), Positives = 99/151 (65%), Gaps = 5/151 (3%)

Query: 20  IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHD 79
            VAVA+DKDK S++ALKWA DN+ ++ QTI LVHV     S    S  +      +Q+ D
Sbjct: 1   SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEED 60

Query: 80  IHAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRS 139
             A E+ LP+RC+C+R+ +QCE VVLE  DVA+A++EYV+ +G+  +++GA      S +
Sbjct: 61  KEAKELLLPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGAS-----SDN 115

Query: 140 SFCRLFKASDTPGTVLKWAPDFCNVYIVSKG 170
            F   FK SD   +VLK APDFC VY+VSKG
Sbjct: 116 HFSMKFKKSDVASSVLKEAPDFCTVYVVSKG 146

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding. Length = 146
>gnl|CDD|238182 cd00293, USP_Like, Usp: Universal stress protein family Back     alignment and domain information
>gnl|CDD|216006 pfam00582, Usp, Universal stress protein family Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 421
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 99.96
PRK15456142 universal stress protein UspG; Provisional 99.89
PRK15005144 universal stress protein F; Provisional 99.89
PRK09982142 universal stress protein UspD; Provisional 99.86
PRK15118144 universal stress global response regulator UspA; P 99.85
PF00582140 Usp: Universal stress protein family; InterPro: IP 99.85
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 99.83
PRK10116142 universal stress protein UspC; Provisional 99.82
cd01987124 USP_OKCHK USP domain is located between the N-term 99.81
PRK11175305 universal stress protein UspE; Provisional 99.79
PRK11175305 universal stress protein UspE; Provisional 99.73
cd00293130 USP_Like Usp: Universal stress protein family. The 99.71
COG0589154 UspA Universal stress protein UspA and related nuc 99.68
PRK12652357 putative monovalent cation/H+ antiporter subunit E 99.49
PRK10490 895 sensor protein KdpD; Provisional 99.2
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 99.03
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 98.14
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 97.23
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 96.62
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 96.53
PLN03159832 cation/H(+) antiporter 15; Provisional 95.71
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 95.12
PRK10696258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 94.78
TIGR00268252 conserved hypothetical protein TIGR00268. The N-te 93.32
COG0037298 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle 93.28
PRK13820394 argininosuccinate synthase; Provisional 93.11
PRK12342254 hypothetical protein; Provisional 92.22
cd01990202 Alpha_ANH_like_I This is a subfamily of Adenine nu 91.73
PLN00200404 argininosuccinate synthase; Provisional 91.38
PF05546207 She9_MDM33: She9 / Mdm33 family; InterPro: IPR0088 89.4
COG2086260 FixA Electron transfer flavoprotein, beta subunit 89.09
PTZ00121 2084 MAEBL; Provisional 88.84
PRK03359256 putative electron transfer flavoprotein FixA; Revi 87.4
PLN03086 567 PRLI-interacting factor K; Provisional 87.13
cd01712177 ThiI ThiI is required for thiazole synthesis in th 86.66
KOG2417 462 consensus Predicted G-protein coupled receptor [Si 86.31
cd01996154 Alpha_ANH_like_III This is a subfamily of Adenine 86.01
PRK10660436 tilS tRNA(Ile)-lysidine synthetase; Provisional 85.97
PRK05253301 sulfate adenylyltransferase subunit 2; Provisional 85.55
TIGR00342371 thiazole biosynthesis/tRNA modification protein Th 85.54
cd01995169 ExsB ExsB is a transcription regulator related pro 85.15
PF09726 697 Macoilin: Transmembrane protein; InterPro: IPR0191 85.05
TIGR00032394 argG argininosuccinate synthase. argG in bacteria, 84.89
PRK04527400 argininosuccinate synthase; Provisional 83.52
PLN03159832 cation/H(+) antiporter 15; Provisional 83.4
cd01986103 Alpha_ANH_like Adenine nucleotide alpha hydrolases 82.76
cd01994194 Alpha_ANH_like_IV This is a subfamily of Adenine n 82.7
PRK09510 387 tolA cell envelope integrity inner membrane protei 82.58
PRK00509399 argininosuccinate synthase; Provisional 82.2
TIGR00884311 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C 82.11
PRK14665360 mnmA tRNA-specific 2-thiouridylase MnmA; Provision 81.28
COG1606269 ATP-utilizing enzymes of the PP-loop superfamily [ 80.9
cd07653251 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B 80.4
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information 
Probab=99.96  E-value=3.3e-28  Score=214.38  Aligned_cols=146  Identities=49%  Similarity=0.776  Sum_probs=124.9

Q ss_pred             EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 044284           20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQ   99 (421)
Q Consensus        20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~   99 (421)
                      +||||||+|+.|.+|++||++++...+++|++|||.++................+.+..+++++++|..+...|...|+.
T Consensus         1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   80 (146)
T cd01989           1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSRKGVQ   80 (146)
T ss_pred             CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCe
Confidence            58999999999999999999999888999999999976533221111112234455666778889999999999888999


Q ss_pred             eEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEeCC
Q 044284          100 CELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKG  170 (421)
Q Consensus       100 ~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~kg  170 (421)
                      ++.+++.|++|+++|++||+++++|+||||+||+++|.     +.|+|+||+..|++++|++|||+||++|
T Consensus        81 ~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~-----~~~~gssva~~Vi~~a~~~c~Vlvv~~~  146 (146)
T cd01989          81 CEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFS-----MKFKKSDVASSVLKEAPDFCTVYVVSKG  146 (146)
T ss_pred             EEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCcee-----ecccCCchhHHHHhcCCCCceEEEEeCc
Confidence            99999988899999999999999999999999999998     7777668999999999999999999997

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>TIGR00268 conserved hypothetical protein TIGR00268 Back     alignment and domain information
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK13820 argininosuccinate synthase; Provisional Back     alignment and domain information
>PRK12342 hypothetical protein; Provisional Back     alignment and domain information
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PLN00200 argininosuccinate synthase; Provisional Back     alignment and domain information
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis [] Back     alignment and domain information
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion] Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed Back     alignment and domain information
>PLN03086 PRLI-interacting factor K; Provisional Back     alignment and domain information
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway Back     alignment and domain information
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms] Back     alignment and domain information
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional Back     alignment and domain information
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI Back     alignment and domain information
>cd01995 ExsB ExsB is a transcription regulator related protein Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>TIGR00032 argG argininosuccinate synthase Back     alignment and domain information
>PRK04527 argininosuccinate synthase; Provisional Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases Back     alignment and domain information
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>PRK00509 argininosuccinate synthase; Provisional Back     alignment and domain information
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit Back     alignment and domain information
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only] Back     alignment and domain information
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 3e-07
3olq_A319 Universal stress protein E; structural genomics, P 4e-07
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 1e-05
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
3loq_A294 Universal stress protein; structural genomics, PSI 2e-04
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 3e-04
2zuo_A861 MVP, major vault protein; repeat domains, protein- 5e-04
3mt0_A290 Uncharacterized protein PA1789; structural genomic 7e-04
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
 Score = 49.4 bits (117), Expect = 3e-07
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 313 AAKQKAVELE---KWKMKEEKRLKETQMGEERGKAKI--KAAIEAAE-AAQKIAKLEVQK 366
            A +   E E   KW+ ++ KRL+E     +  + +   KA  +  E   ++  ++E  K
Sbjct: 76  QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135

Query: 367 RVN--AEAKALKEAEE 380
             N  A+    ++ + 
Sbjct: 136 INNRIADKAFYQQPDA 151
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Length = 319 Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Length = 175 Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Length = 138 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Length = 294 Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Length = 268 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Length = 290 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query421
3s3t_A146 Nucleotide-binding protein, universal stress PROT 99.91
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 99.9
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 99.9
3fg9_A156 Protein of universal stress protein USPA family; A 99.89
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 99.89
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 99.88
2z08_A137 Universal stress protein family; uncharacterized c 99.88
3dlo_A155 Universal stress protein; unknown function, struct 99.87
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 99.87
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 99.87
3tnj_A150 Universal stress protein (USP); structural genomic 99.87
3fdx_A143 Putative filament protein / universal stress PROT; 99.85
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 99.82
3olq_A319 Universal stress protein E; structural genomics, P 99.8
1q77_A138 Hypothetical protein AQ_178; structural genomics, 99.78
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.77
3mt0_A290 Uncharacterized protein PA1789; structural genomic 99.77
3loq_A294 Universal stress protein; structural genomics, PSI 99.77
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.76
3olq_A319 Universal stress protein E; structural genomics, P 99.75
3mt0_A290 Uncharacterized protein PA1789; structural genomic 99.74
3loq_A294 Universal stress protein; structural genomics, PSI 99.72
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.72
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.59
3a2k_A464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 95.23
1wy5_A317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 94.79
1ni5_A433 Putative cell cycle protein MESJ; structural genom 90.82
1k92_A455 Argininosuccinate synthase, argininosuccinate SY; 89.02
3bl5_A219 Queuosine biosynthesis protein QUEC; PREQ1 biosynt 86.16
1kor_A400 Argininosuccinate synthetase; ligase, riken struct 83.82
2nz2_A413 Argininosuccinate synthase; amino-acid biosynthesi 83.78
1zun_A325 Sulfate adenylyltransferase subunit 2; beta barrel 83.51
3qwe_A279 GMIP, GEM-interacting protein; structural genomics 82.88
1efp_B252 ETF, protein (electron transfer flavoprotein); ele 81.61
1efv_B255 Electron transfer flavoprotein; electron transport 81.39
2pg3_A232 Queuosine biosynthesis protein QUEC; YP_049261.1, 80.36
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
Probab=99.91  E-value=1.2e-23  Score=182.28  Aligned_cols=143  Identities=15%  Similarity=0.154  Sum_probs=122.0

Q ss_pred             CCCCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 044284           15 EGREKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCT   94 (421)
Q Consensus        15 ~~~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~   94 (421)
                      ..++++||||+|+|+.|.+|++||++++...+++|+++||.++.......  .......+.+..++++++.|..+...+.
T Consensus         2 ~~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (146)
T 3s3t_A            2 NARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPA--LDPVLSELLDAEAAHAKDAMRQRQQFVA   79 (146)
T ss_dssp             CCCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGG--GHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccc--cccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999889999999999876432111  0013344556677888999999999999


Q ss_pred             hcCC-ceEEEEEEcCCHHHHHHH-HHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEe
Q 044284           95 RRHI-QCELVVLERQDVARALIE-YVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVS  168 (421)
Q Consensus        95 ~~gV-~~e~vvleg~dva~aIve-~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~  168 (421)
                      ..|+ .++..+..| +++++|++ +|++.++|+||||++|++++.     +.|+ ||++..|++++|  |||+||+
T Consensus        80 ~~g~~~~~~~~~~g-~~~~~I~~~~a~~~~~dliV~G~~~~~~~~-----~~~~-Gs~~~~vl~~~~--~pVlvV~  146 (146)
T 3s3t_A           80 TTSAPNLKTEISYG-IPKHTIEDYAKQHPEIDLIVLGATGTNSPH-----RVAV-GSTTSYVVDHAP--CNVIVIR  146 (146)
T ss_dssp             TSSCCCCEEEEEEE-CHHHHHHHHHHHSTTCCEEEEESCCSSCTT-----TCSS-CHHHHHHHHHCS--SEEEEEC
T ss_pred             hcCCcceEEEEecC-ChHHHHHHHHHhhcCCCEEEECCCCCCCcc-----eEEE-cchHHHHhccCC--CCEEEeC
Confidence            9999 999887776 79999999 999999999999999999998     6665 799999999999  9999985
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Back     alignment and structure
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Back     alignment and structure
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A* Back     alignment and structure
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis} Back     alignment and structure
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A* Back     alignment and structure
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens} Back     alignment and structure
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2 Back     alignment and structure
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 Back     alignment and structure
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S* Back     alignment and structure
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 421
d2gm3a1171 c.26.2.4 (A:5-175) Putative ethylene-responsive pr 4e-07
d1jmva_140 c.26.2.4 (A:) Universal stress protein A, UspA {Ha 6e-07
d2z3va1135 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 { 2e-06
d1q77a_138 c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex 3e-06
d1tq8a_147 c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobac 4e-05
d1mjha_160 c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archa 0.003
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 171 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 47.6 bits (112), Expect = 4e-07
 Identities = 24/165 (14%), Positives = 57/165 (34%), Gaps = 25/165 (15%)

Query: 21  VAVAID---------KDKFSQHALKWAADNILSRHQT---IKLVHVIQKSH---SNNQYS 65
           V VA++              + A +W  + I+  + +   I L+HV         +    
Sbjct: 4   VMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSI 63

Query: 66  VGISEELIEQQQHDI-HAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVE 124
               E+  + +Q +    + +   F   C    + CE  + +  D    + + V +   +
Sbjct: 64  YASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWI-KTGDPKDVICQEVKRVRPD 122

Query: 125 TMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSK 169
            +++G+            ++F  +      +K A   C V  + +
Sbjct: 123 FLVVGSRGLGRFQ-----KVFVGT-VSAFCVKHAE--CPVMTIKR 159
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Length = 140 Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Length = 135 Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Length = 138 Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 147 Back     information, alignment and structure
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 160 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query421
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 99.93
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 99.91
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 99.91
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 99.87
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 99.85
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 99.8
d1wy5a1216 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 95.29
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 92.44
d2c5sa1218 Thiamine biosynthesis protein ThiI, C-terminal dom 90.19
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 86.24
d3clsc1262 Small, beta subunit of electron transfer flavoprot 85.34
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.93  E-value=1.9e-25  Score=195.73  Aligned_cols=145  Identities=14%  Similarity=0.112  Sum_probs=121.8

Q ss_pred             CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccc--------cc----cchHHHHHHHHHHHHHH
Q 044284           17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYS--------VG----ISEELIEQQQHDIHAME   84 (421)
Q Consensus        17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~--------~~----~~~~~~~~~~~~~~a~e   84 (421)
                      ||++||||||+|+.|++|++||++++...+++|+|+||.++......+.        ..    ......+.+...+++++
T Consensus         2 m~~~ILvavD~s~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (160)
T d1mjha_           2 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN   81 (160)
T ss_dssp             CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred             CcCeEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999987654221100        00    01223345556678889


Q ss_pred             HHHHHHHHhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceE
Q 044284           85 VFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNV  164 (421)
Q Consensus        85 lL~~~r~~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V  164 (421)
                      .|..+...|...|+.++.++..| +|++.|+++|+++++|+||||+||++++.     +.|+ ||++.+|++++|  |||
T Consensus        82 ~l~~~~~~~~~~gv~~~~~~~~G-~~~~~I~~~a~~~~~dliV~G~~~~~~~~-----~~~~-GS~a~~vl~~s~--~pV  152 (160)
T d1mjha_          82 KMENIKKELEDVGFKVKDIIVVG-IPHEEIVKIAEDEGVDIIIMGSHGKTNLK-----EILL-GSVTENVIKKSN--KPV  152 (160)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEEEE-CHHHHHHHHHHHTTCSEEEEESCCSSCCT-----TCSS-CHHHHHHHHHCC--SCE
T ss_pred             HHHHHHHHHHhcCCeEEEEEEec-cHHHHHhhhhhccccceEEeccCCCCccc-----cccc-CcHHHHHHhcCC--CCE
Confidence            99999999999999999988876 89999999999999999999999999998     7776 799999999999  999


Q ss_pred             EEEeCC
Q 044284          165 YIVSKG  170 (421)
Q Consensus       165 ~VV~kg  170 (421)
                      +||++.
T Consensus       153 lvV~~~  158 (160)
T d1mjha_         153 LVVKRK  158 (160)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            999874
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure