Citrus Sinensis ID: 044290

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
MAAGLSMLKLSVLSLLSNLNSGLWPESSKGLKMFPPTCNRIECPSFETVHVGNGFEIRRYDSSMWMSTSPIQDISLVEAF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEcccEEEEEEccccEEEccccccccHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEccccEEEEEccccEEEEccccccccHHHcc
Coil and Loop (DISEMBL)
MAAGLSMLKLSVLSLLSNlnsglwpesskglkmfpptcnriecpsfetvhvgngfeirrydssmwmstspiqdisLVEAF
Flexible Loop (DISEMBL)
MAAGLSMLKLSVLSLLSNLNSGLWPESSKGLKMFPPTCNRIECpsfetvhvgNGFEIRRydssmwmstspiqdislveAF
Low Complexity Region (SEG)
MAAGlsmlklsvlsllsnlnsglWPESSKGLKMFPPTCNRIECPSFETVHVGNGFEIRRYDSSMWMSTSPIQDISLVEAF
Disordered region (IsUnstruct)
*******LKLSVLSLLSNLNSGLWPESSKGLKMFPPTCNRIECPSFETVHVGNGFEIRRYDSSMWMS*************
Disordered Region (DISOPRED)
*****SMLKLSVLSLLSNLNSGLWPESSKGLKMFPPTCNRIECPSFETVHVGNGFEIRRYDSSMWMSTSPIQDISLVEAF
Disordered Region (DISEMBL)
MAAGLSMLKLSVLSLLSNLNSGLWPESSKGLKMFPPTCNRIECPSFETVHVGNGFEIRRYDSSMWMSTSPIQDISLVEAF
Disordered Region (DISPRO)
*AAGLSMLKLSVLSLLSNLNSGLWPESSKGLKMFPPTCNRIECPSFETVHVGNGFEIRRYDSSMWMSTSPIQDISLVEA*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAGLSMLKLSVLSLLSNLNSGLWPESSKGLKMFPPTCNRIECPSFETVHVGNGFEIRRYDSSMWMSTSPIQDISLVEAF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
225470739	227	PREDICTED: heme-binding protein 2 [Vitis	0.687	0.242	0.636	8e-16
351723865	234	uncharacterized protein LOC100305993 pre	0.725	0.247	0.603	1e-15
147832981	227	hypothetical protein VITISV_035042 [Viti	0.687	0.242	0.636	2e-15
312281589	254	unnamed protein product [Thellungiella h	0.687	0.216	0.660	2e-15
18411970	225	SOUL heme-binding-like protein [Arabidop	0.9	0.32	0.531	2e-15
21593898	225	SOUL-like protein [Arabidopsis thaliana]	0.9	0.32	0.531	3e-15
255578538	234	Heme-binding protein, putative [Ricinus	0.8	0.273	0.542	4e-15
297844644	232	soul heme-binding family protein [Arabid	0.687	0.237	0.603	1e-14
15220033	232	SOUL heme-binding protein [Arabidopsis t	0.687	0.237	0.603	1e-14
388517637	217	unknown [Lotus japonicus]	0.637	0.235	0.666	1e-14

>gi|225470739|ref|XP_002266519.1| PREDICTED: heme-binding protein 2 [Vitis vinifera]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 47/55 (85%)

Query: 25 PESSKGLKMFPPTCNRIECPSFETVHVGNGFEIRRYDSSMWMSTSPIQDISLVEA 79
          P S K   +FPPTC+RIECP+++ +  GNG+EIRRY+S++W+STSPIQDISLV+A
Sbjct: 22 PNSQKSTGLFPPTCSRIECPTYDLIQAGNGYEIRRYNSTVWISTSPIQDISLVDA 76

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723865|ref|NP_001236014.1| uncharacterized protein LOC100305993 precursor [Glycine max] gi|255627213|gb|ACU13951.1| unknown [Glycine max]

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 47/58 (81%)

Query: 22 GLWPESSKGLKMFPPTCNRIECPSFETVHVGNGFEIRRYDSSMWMSTSPIQDISLVEA 79
          G+  ++ + +   PPTC RIECPS++ +HVGNG+EIRRY+S +W+S SPIQDISLVEA
Sbjct: 25 GVRSDTLQNVGAIPPTCKRIECPSYDVIHVGNGYEIRRYNSPVWISNSPIQDISLVEA 82

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832981|emb|CAN68405.1| hypothetical protein VITISV_035042 [Vitis vinifera]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 46/55 (83%)

Query: 25 PESSKGLKMFPPTCNRIECPSFETVHVGNGFEIRRYDSSMWMSTSPIQDISLVEA 79
          P S K    FPPTC+RIECP+++ +  GNG+EIRRY+S++W+STSPIQDISLV+A
Sbjct: 22 PNSQKSTGSFPPTCSRIECPTYDLIQAGNGYEIRRYNSTVWISTSPIQDISLVDA 76

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281589|dbj|BAJ33660.1| unnamed protein product [Thellungiella halophila]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/56 (66%), Positives = 46/56 (82%), Gaps = 1/56 (1%)

Query: 25 PESSKGL-KMFPPTCNRIECPSFETVHVGNGFEIRRYDSSMWMSTSPIQDISLVEA 79
          P S  GL   FPP+CNRIECPS+E +H GNG+EIRRY+ ++W+ST PIQDISLV+A
Sbjct: 29 PISRPGLVGKFPPSCNRIECPSYEVIHAGNGYEIRRYEKTVWISTEPIQDISLVDA 84

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411970|ref|NP_565181.1| SOUL heme-binding-like protein [Arabidopsis thaliana] gi|4836887|gb|AAD30590.1|AC007260_21 Hypothetical protein [Arabidopsis thaliana] gi|8052530|gb|AAF71794.1|AC013430_3 F3F9.4 [Arabidopsis thaliana] gi|332197986|gb|AEE36107.1| SOUL heme-binding-like protein [Arabidopsis thaliana]

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 7/79 (8%)

Query: 1  MAAGLSMLKLSVLSLLSNLNSGLWPESSKGLKMFPPTCNRIECPSFETVHVGNGFEIRRY 60
          M A LS+ KLS L  L +  S L       +   PP CNR ECPS+E VH GNG+EI RY
Sbjct: 1  MEAALSIFKLSFLLTLLSGGSDL-------IDSLPPNCNRAECPSYEVVHAGNGYEIHRY 53

Query: 61 DSSMWMSTSPIQDISLVEA 79
          ++++W+ST PIQDISL EA
Sbjct: 54 NTTVWISTEPIQDISLNEA 72

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593898|gb|AAM65865.1| SOUL-like protein [Arabidopsis thaliana]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 7/79 (8%)

Query: 1  MAAGLSMLKLSVLSLLSNLNSGLWPESSKGLKMFPPTCNRIECPSFETVHVGNGFEIRRY 60
          M A LS+ KLS L  L +  S L       +   PP CNR ECPS+E VH GNG+EI RY
Sbjct: 1  MEAALSIFKLSFLLTLLSGGSDL-------IDSLPPNCNRAECPSYEVVHAGNGYEIHRY 53

Query: 61 DSSMWMSTSPIQDISLVEA 79
          ++++W+ST PIQDISL EA
Sbjct: 54 NTTVWISTEPIQDISLNEA 72

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578538|ref|XP_002530132.1| Heme-binding protein, putative [Ricinus communis] gi|223530357|gb|EEF32248.1| Heme-binding protein, putative [Ricinus communis]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 51/70 (72%), Gaps = 6/70 (8%)

Query: 16 LSNLNSGLWPESS------KGLKMFPPTCNRIECPSFETVHVGNGFEIRRYDSSMWMSTS 69
          +S+ N G+W E +      K +  +PPTCNRIECP ++ + VGNG+EIR Y+S+ WMSTS
Sbjct: 16 MSSANFGIWNEPNNNGDNVKSIGTYPPTCNRIECPLYDVIEVGNGYEIRSYNSTAWMSTS 75

Query: 70 PIQDISLVEA 79
           IQDISLV+A
Sbjct: 76 SIQDISLVDA 85

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844644|ref|XP_002890203.1| soul heme-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297336045|gb|EFH66462.1| soul heme-binding family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 47/58 (81%), Gaps = 3/58 (5%)

Query: 25 PESSKGLKM---FPPTCNRIECPSFETVHVGNGFEIRRYDSSMWMSTSPIQDISLVEA 79
          P++  G+     FPP+CNRIECPS+E VH GNG+EIRRY++++W+ST PI DISLV+A
Sbjct: 26 PDAESGVAQIGKFPPSCNRIECPSYELVHSGNGYEIRRYNTTVWVSTEPIPDISLVDA 83

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220033|ref|NP_173153.1| SOUL heme-binding protein [Arabidopsis thaliana] gi|5734756|gb|AAD50021.1|AC007651_16 Similar to SOUL Protein [Arabidopsis thaliana] gi|21592576|gb|AAM64525.1| SOUL-like protein [Arabidopsis thaliana] gi|88196741|gb|ABD43013.1| At1g17100 [Arabidopsis thaliana] gi|332191420|gb|AEE29541.1| SOUL heme-binding protein [Arabidopsis thaliana]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 47/58 (81%), Gaps = 3/58 (5%)

Query: 25 PESSKGLKM---FPPTCNRIECPSFETVHVGNGFEIRRYDSSMWMSTSPIQDISLVEA 79
          P++  G+     FPP+CNRIECPS+E VH GNG+EIRRY++++W+ST PI DISLV+A
Sbjct: 26 PDAESGVAQIGKFPPSCNRIECPSYELVHSGNGYEIRRYNNTVWVSTEPIPDISLVDA 83

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517637|gb|AFK46880.1| unknown [Lotus japonicus]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 42/51 (82%)

Query: 29 KGLKMFPPTCNRIECPSFETVHVGNGFEIRRYDSSMWMSTSPIQDISLVEA 79
          K     PPTC RIECPS++ + VGNG+EIRRY+S++W+S SPIQDISLVEA
Sbjct: 33 KNAGSIPPTCKRIECPSYDVIQVGNGYEIRRYNSTVWISNSPIQDISLVEA 83

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
TAIR|locus:2020307	232	HBP1 "AT1G17100" [Arabidopsis	0.687	0.237	0.603	4.7e-16
TAIR|locus:2032065	225	AT1G78450 "AT1G78450" [Arabido	0.562	0.2	0.688	1.8e-14
TAIR|locus:2032055	219	AT1G78460 [Arabidopsis thalian	0.662	0.242	0.464	3.2e-10

TAIR|locus:2020307 HBP1 "AT1G17100" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 35/58 (60%), Positives = 47/58 (81%)

Query:    25 PESSKGLKM---FPPTCNRIECPSFETVHVGNGFEIRRYDSSMWMSTSPIQDISLVEA 79
             P++  G+     FPP+CNRIECPS+E VH GNG+EIRRY++++W+ST PI DISLV+A
Sbjct:    26 PDAESGVAQIGKFPPSCNRIECPSYELVHSGNGYEIRRYNNTVWVSTEPIPDISLVDA 83

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2032065 AT1G78450 "AT1G78450" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 31/45 (68%), Positives = 38/45 (84%)

Query:    35 PPTCNRIECPSFETVHVGNGFEIRRYDSSMWMSTSPIQDISLVEA 79
             PP CNR ECPS+E VH GNG+EI RY++++W+ST PIQDISL EA
Sbjct:    28 PPNCNRAECPSYEVVHAGNGYEIHRYNTTVWISTEPIQDISLNEA 72

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2032055 AT1G78460 [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 26/56 (46%), Positives = 38/56 (67%)

Query:    24 WPESSKGLKMFPPTCNRIECPSFETVHVGNGFEIRRYDSSMWMSTSPIQDISLVEA 79
             W   S G +  P TC+  ECP+++ V  G GFEIR YD+++W+STSPI  +S+ +A
Sbjct:    29 W-NPSNGFR--PGTCDHYECPTYKLVEAGYGFEIRMYDAALWISTSPIPSLSMTQA 81


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.432    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       80        61   0.00091  102 3  11 22  0.39    28
                                                     29  0.39    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  549 (58 KB)
  Total size of DFA:  102 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.72u 0.16s 6.88t   Elapsed:  00:00:01
  Total cpu time:  6.72u 0.16s 6.88t   Elapsed:  00:00:01
  Start:  Tue May 21 03:09:04 2013   End:  Tue May 21 03:09:05 2013

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	80
pfam04832	174	pfam04832, SOUL, SOUL heme-binding protein	5e-09

>gnl|CDD|218284 pfam04832, SOUL, SOUL heme-binding protein

 Score = 49.6 bits (119), Expect = 5e-09
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 40 RIECPSFETVHVGNGFEIRRYDSSMWMSTSPIQD 73
           +E P +  +     +EIRRY+  +W  T     
Sbjct: 1  AVETPPYTVLEREGDYEIRRYEPMVWAETEVDAG 34

This family represents a group of putative heme-binding proteins. Our family includes archaeal and bacterial homologues. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	80
PF04832	176	SOUL: SOUL heme-binding protein; InterPro: IPR0069	99.19

>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins []

Probab=99.19  E-value=1.1e-11  Score=86.40  Aligned_cols=39  Identities=44%  Similarity=0.894  Sum_probs=30.7

Q ss_pred             CcCCCCeEEEeecCceeEEeeCCCCeEEecccccCcchhc
Q 044290           40 RIECPSFETVHVGNGFEIRRYDSSMWMSTSPIQDISLVEA   79 (80)
Q Consensus        40 ~~EcP~Y~vv~~~~dYEvR~Y~~skWVST~~V~~~s~~~A   79 (80)
                      ++|||+|+|+++.++||||+|++++||+|. +.+.++++|
T Consensus         1 ~~E~P~Y~v~~~~~~~EiR~Y~~~~w~~t~-~~~~~~~~a   39 (176)
T PF04832_consen    1 DIECPPYEVLKKGDDYEIRRYPPAKWASTT-VSGCSFEEA   39 (176)
T ss_dssp             --BS-SEEEECCCSSCEEEEE--CEEEEEE-EECS-HHHH
T ss_pred             CCcCCCeEEEEeCCCEEEEEECCceEEEEE-ecCCChhHH
Confidence            469999999999999999999999999997 888877765

It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	80
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	3e-08
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	1e-06
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	1e-06

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens} Length = 227

 Score = 47.2 bits (111), Expect = 3e-08
 Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 35 PPTCNRIECPSFETVHVGN----GFEIRRYDSSMWMSTSPIQDISLVEA 79
                +E P ++           +EIR Y  + W+STS ++ +    A
Sbjct: 36 DAAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTS-VESMDWDSA 83

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 3r85_E Length = 212

 Score = 43.0 bits (100), Expect = 1e-06
 Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 35 PPTCNRIECPSFETVHVG----NGFEIRRYDSSMWMSTSPIQDISLVEA 79
                +E P ++           +EIR Y  + W+STS ++ +    A
Sbjct: 17 DAAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTS-VESMDWDSA 64

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A Length = 195

 Score = 42.5 bits (99), Expect = 1e-06
 Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 26 ESSKGLKMFPPTCNRIECPSFETVHVGN----GFEIRRYDSSMWMSTSPIQDISLVEA 79
          +S+            +E   ++ +  G      +E R  +   + +   + D  + EA
Sbjct: 3  QSTHHHHHHNSLFGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVE-VTDKPVDEA 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	80
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	99.21
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	99.16
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	99.08

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A

Probab=99.21  E-value=9.2e-12  Score=88.43  Aligned_cols=43  Identities=16%  Similarity=0.313  Sum_probs=39.5

Q ss_pred             CCcCCcCCCCeEEEeecCc----eeEEeeCCCCeEEecccccCcchhc
Q 044290           36 PTCNRIECPSFETVHVGNG----FEIRRYDSSMWMSTSPIQDISLVEA   79 (80)
Q Consensus        36 ~fC~~~EcP~Y~vv~~~~d----YEvR~Y~~skWVST~~V~~~s~~~A   79 (80)
                      ..|.++|||+|+|+++.++    ||||+|++.+||+|+ +++.++++|
T Consensus        13 ~~~~~~E~P~Y~Vl~~~~~~~~~yEiR~Y~~~~wa~t~-~~~~~~~~A   59 (195)
T 2gov_A           13 SLFGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVE-VTDKPVDEA   59 (195)
T ss_dssp             CCCCSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEE-EESSCHHHH
T ss_pred             cccCCCCCCCeEEEEecCCCCCcEEEEEeCCeEEEEEE-ecCCChhHH
Confidence            5688999999999999887    999999999999997 999988876

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}

Probab=99.16  E-value=7.1e-12  Score=91.73  Aligned_cols=45  Identities=24%  Similarity=0.500  Sum_probs=35.2

Q ss_pred             CCCCcCCcCCCCeEEEee----cCceeEEeeCCCCeEEecccccCcchhc
Q 044290           34 FPPTCNRIECPSFETVHV----GNGFEIRRYDSSMWMSTSPIQDISLVEA   79 (80)
Q Consensus        34 ~P~fC~~~EcP~Y~vv~~----~~dYEvR~Y~~skWVST~~V~~~s~~~A   79 (80)
                      .+..|+++|||+|+|+++    +++||||+|++.+||+|+ +++.++++|
T Consensus        35 ~~~~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~-v~~~~~~~A   83 (227)
T 4b0y_A           35 EDAAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTS-VESMDWDSA   83 (227)
T ss_dssp             ------CCBCCCEECCC------CCSEEEEECCEEEEEEE-EEESCHHHH
T ss_pred             cccccCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEE-EeCCCHHHH
Confidence            456788899999999999    789999999999999997 999998876

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E

Probab=99.08  E-value=2.6e-11  Score=87.68  Aligned_cols=42  Identities=26%  Similarity=0.570  Sum_probs=36.5

Q ss_pred             CcCCcCCCCeEEEee----cCceeEEeeCCCCeEEecccccCcchhc
Q 044290           37 TCNRIECPSFETVHV----GNGFEIRRYDSSMWMSTSPIQDISLVEA   79 (80)
Q Consensus        37 fC~~~EcP~Y~vv~~----~~dYEvR~Y~~skWVST~~V~~~s~~~A   79 (80)
                      -+.++|||+|+|+++    +++||||+|++.+||+|+ +++.++++|
T Consensus        19 ~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~-v~~~~~~~A   64 (212)
T 3r8j_A           19 AAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTS-VESMDWDSA   64 (212)
T ss_dssp             ---CCBCCCEECCSSCCCCCTTCEEEEECCEEEEEEE-EEESCHHHH
T ss_pred             hcCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEE-EeCCCHHHH
Confidence            344689999999999    789999999999999997 999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	80
d2gova1	184	d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (	5e-05

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 184

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (85), Expect = 5e-05
 Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 5/43 (11%)

Query: 41 IECPSFETVHVGN----GFEIRRYDSSMWMSTSPIQDISLVEA 79
          +E   ++ +  G      +E R  +   + +   + D  + EA
Sbjct: 7  VETWPWQVLSTGGKEDVSYEERACEGGKFATVE-VTDKPVDEA 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	80
d2gova1	184	Heme-binding protein 1 {Mouse (Mus musculus) [TaxI	99.11

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=2e-11  Score=83.55  Aligned_cols=40  Identities=18%  Similarity=0.363  Sum_probs=36.1

Q ss_pred             CCcCCCCeEEEeecC----ceeEEeeCCCCeEEecccccCcchhc
Q 044290           39 NRIECPSFETVHVGN----GFEIRRYDSSMWMSTSPIQDISLVEA   79 (80)
Q Consensus        39 ~~~EcP~Y~vv~~~~----dYEvR~Y~~skWVST~~V~~~s~~~A   79 (80)
                      +.+|||+|+|+++.+    +||+|+|++++||+|+ +.+.++++|
T Consensus         5 ~~~E~~~y~v~~~~~~~~~~fE~R~Y~~~~wv~t~-~~~~~~~~a   48 (184)
T d2gova1           5 GSVETWPWQVLSTGGKEDVSYEERACEGGKFATVE-VTDKPVDEA   48 (184)
T ss_dssp             CSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEE-EESSCHHHH
T ss_pred             ccccCCCcEEEEECCccCCCEEEEecCCceEEEEE-ecCCChhhH
Confidence            478999999999865    7999999999999997 999998876