Citrus Sinensis ID: 044292

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
MSSSSENNSKKMIILKSSDGETFEVEETVALQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFHINNDFTPQEEQEIRRENQWAFE
ccccccccccccEEEEcccccEEEEcHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHcccccc
ccHHHccccccEEEEEEccccEEEEcHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHHHc
mssssennsKKMIILKssdgetfevEETVALQSQTIRHMVeddcadsviplpnvtGTILSMVVEYCKKHVEAAAAaaggdndvknwdrdfVKVDQETLLDLLLAANYLNIKDLLELTCQATADvikdkspeeVRRIFhinndftpqeEQEIRRENQWAFE
mssssennskkmiilkssdgetfEVEETVALQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEAAAaaaggdndvknWDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFhinndftpqeeqEIRRENQWAFE
mssssennskkmiiLKSSDGETFEVEETVALQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEaaaaaaGGDNDVKNWDRDFVKVDQETlldlllaanylnIKDLLELTCQATADVIKDKSPEEVRRIFHINNDFTPQEEQEIRRENQWAFE
************************VEETVALQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDK***EVRRIFHIN********************
***************KSSDGETFEVEETVALQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFHINNDFTPQE****RRENQWAFE
*********KKMIILKSSDGETFEVEETVALQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFHINNDFTPQEEQEIRRENQWAFE
*********KKMIILKSSDGETFEVEETVALQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEAAA*AAGGDNDVKNWDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFHINNDFTPQEEQEIRRENQWAFE
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSSSENNSKKMIILKSSDGETFEVEETVALQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFHINNDFTPQEEQEIRRENQWAFE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query160 2.2.26 [Sep-21-2011]
Q9LNT9163 SKP1-like protein 4 OS=Ar yes no 0.943 0.926 0.664 5e-59
Q9SL93163 SKP1-like protein 3 OS=Ar no no 0.943 0.926 0.652 8e-57
Q39255160 SKP1-like protein 1A OS=A no no 0.95 0.95 0.672 9e-55
Q9FHW7171 SKP1-like protein 1B OS=A no no 0.937 0.877 0.616 1e-51
O49484152 SKP1-like protein 11 OS=A no no 0.943 0.993 0.605 1e-49
O65674152 SKP1-like protein 12 OS=A no no 0.937 0.986 0.594 3e-48
Q9LSX8152 SKP1-like protein 10 OS=A no no 0.943 0.993 0.592 4e-48
Q9M1X5154 SKP1-like protein 13 OS=A no no 0.937 0.974 0.585 6e-47
Q9LSX9153 SKP1-like protein 9 OS=Ar no no 0.943 0.986 0.581 1e-46
O81057149 SKP1-like protein 14 OS=A no no 0.918 0.986 0.581 3e-45
>sp|Q9LNT9|ASK4_ARATH SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1 Back     alignment and function desciption
 Score =  226 bits (576), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 107/161 (66%), Positives = 132/161 (81%), Gaps = 10/161 (6%)

Query: 9   SKKMIILKSSDGETFEVEETVALQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKK 68
           +KKMIILKSSDGE+FE+EE VA++SQTI+HM+EDDCAD+ IPLPNVTG IL+ V+EYCKK
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 69  HVEAAAAAAGGDND---------VKNWDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQ 119
           HVE AAA AGGD D         +KNWD +FVKVDQ TL DL+LAANYLNI  LL+LTC+
Sbjct: 64  HVE-AAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCK 122

Query: 120 ATADVIKDKSPEEVRRIFHINNDFTPQEEQEIRRENQWAFE 160
           A AD ++ K+PE++R  F+I ND+TP+EE E+R EN+WAFE
Sbjct: 123 AVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163
Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SL93|ASK3_ARATH SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1 Back     alignment and function description
>sp|Q39255|SKP1A_ARATH SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1 Back     alignment and function description
>sp|Q9FHW7|SKP1B_ARATH SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1 Back     alignment and function description
>sp|O49484|ASK11_ARATH SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1 Back     alignment and function description
>sp|O65674|ASK12_ARATH SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1 Back     alignment and function description
>sp|Q9LSX8|ASK10_ARATH SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=1 Back     alignment and function description
>sp|Q9M1X5|ASK13_ARATH SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1 Back     alignment and function description
>sp|Q9LSX9|ASK9_ARATH SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1 Back     alignment and function description
>sp|O81057|ASK14_ARATH SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query160
227184175158 SKP1-like protein [Citrus maxima] 0.956 0.968 0.713 2e-60
18394828163 S-phase kinase-associated protein 1 [Ara 0.943 0.926 0.664 3e-57
224105153158 predicted protein [Populus trichocarpa] 0.937 0.949 0.681 4e-56
297825065161 hypothetical protein ARALYDRAFT_481069 [ 0.943 0.937 0.652 2e-55
18400912163 S-phase kinase-associated protein 1 [Ara 0.943 0.926 0.652 4e-55
225428047155 PREDICTED: SKP1-like protein 1A [Vitis v 0.95 0.980 0.660 1e-54
2673870165 fimbriata-associated protein [Antirrhinu 0.981 0.951 0.680 1e-54
82470779156 Skp1-like protein 1 [Petunia integrifoli 0.956 0.980 0.696 4e-54
357483877155 SKP1-like protein [Medicago truncatula] 0.956 0.987 0.694 1e-53
255539024157 skp1, putative [Ricinus communis] gi|223 0.956 0.974 0.692 1e-53
>gi|227184175|gb|ACP20181.1| SKP1-like protein [Citrus maxima] Back     alignment and taxonomy information
 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 112/157 (71%), Positives = 131/157 (83%), Gaps = 4/157 (2%)

Query: 8   NSKKMIILKSSDGETFEVEETVALQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCK 67
           +S+K I LKSSDGETFEVEETVAL+SQTI+H VEDDCAD+VIPLPNVT TILS V+EYCK
Sbjct: 2   SSEKKITLKSSDGETFEVEETVALESQTIKHTVEDDCADTVIPLPNVTSTILSKVIEYCK 61

Query: 68  KHVEAAAAAAGGD----NDVKNWDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQATAD 123
           KHVEA +     D    +D+K WD DFVKVDQ TL DL+LAANYLNIK LL+LTCQ  AD
Sbjct: 62  KHVEAGSGDKKDDKSTVDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVAD 121

Query: 124 VIKDKSPEEVRRIFHINNDFTPQEEQEIRRENQWAFE 160
           +IK K+PEE+R+ F+I NDF+P EE+E+RRENQWAFE
Sbjct: 122 MIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158

Source: Citrus maxima

Species: Citrus maxima

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|18394828|ref|NP_564105.1| S-phase kinase-associated protein 1 [Arabidopsis thaliana] gi|75175292|sp|Q9LNT9.1|ASK4_ARATH RecName: Full=SKP1-like protein 4; Short=AtSK4 gi|8778984|gb|AAF79899.1|AC022472_8 Contains similarity to Skp1 mRNA from Medicago sativa gb|AF135596 and is a member of Skp1 family PF|01466 [Arabidopsis thaliana] gi|16648855|gb|AAL25617.1| At1g20140/T20H2_8 [Arabidopsis thaliana] gi|20466137|gb|AAM19990.1| At1g20140/T20H2_8 [Arabidopsis thaliana] gi|332191822|gb|AEE29943.1| S-phase kinase-associated protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224105153|ref|XP_002313704.1| predicted protein [Populus trichocarpa] gi|222850112|gb|EEE87659.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297825065|ref|XP_002880415.1| hypothetical protein ARALYDRAFT_481069 [Arabidopsis lyrata subsp. lyrata] gi|297326254|gb|EFH56674.1| hypothetical protein ARALYDRAFT_481069 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18400912|ref|NP_565604.1| S-phase kinase-associated protein 1 [Arabidopsis thaliana] gi|75206636|sp|Q9SL93.1|ASK3_ARATH RecName: Full=SKP1-like protein 3; Short=AtSK3 gi|4874308|gb|AAD31370.1| E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 (At3), putative [Arabidopsis thaliana] gi|15450665|gb|AAK96604.1| At2g25700/F3N11.15 [Arabidopsis thaliana] gi|22655042|gb|AAM98112.1| At2g25700/F3N11.15 [Arabidopsis thaliana] gi|330252645|gb|AEC07739.1| S-phase kinase-associated protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225428047|ref|XP_002279232.1| PREDICTED: SKP1-like protein 1A [Vitis vinifera] gi|147820987|emb|CAN73136.1| hypothetical protein VITISV_023042 [Vitis vinifera] Back     alignment and taxonomy information
>gi|2673870|emb|CAA75118.1| fimbriata-associated protein [Antirrhinum majus] Back     alignment and taxonomy information
>gi|82470779|gb|ABB77426.1| Skp1-like protein 1 [Petunia integrifolia subsp. inflata] gi|169647579|gb|ACA61786.1| SKP1-like protein 4 [Petunia x hybrida] Back     alignment and taxonomy information
>gi|357483877|ref|XP_003612225.1| SKP1-like protein [Medicago truncatula] gi|109255188|gb|ABG27019.1| SKP1-like a [Medicago truncatula] gi|217071242|gb|ACJ83981.1| unknown [Medicago truncatula] gi|355513560|gb|AES95183.1| SKP1-like protein [Medicago truncatula] gi|388519045|gb|AFK47584.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255539024|ref|XP_002510577.1| skp1, putative [Ricinus communis] gi|223551278|gb|EEF52764.1| skp1, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query160
TAIR|locus:2165825171 ASK2 "AT5G42190" [Arabidopsis 0.506 0.473 0.580 6e-46
TAIR|locus:2204435160 SKP1 "AT1G75950" [Arabidopsis 0.912 0.912 0.594 3.4e-45
TAIR|locus:2198621163 SK4 "AT1G20140" [Arabidopsis t 0.906 0.889 0.567 5.7e-43
TAIR|locus:2050281163 SK3 "AT2G25700" [Arabidopsis t 0.906 0.889 0.554 8.4e-42
TAIR|locus:2080532154 SK13 "AT3G60010" [Arabidopsis 0.912 0.948 0.533 1.3e-38
TAIR|locus:2124281152 SK11 "AT4G34210" [Arabidopsis 0.906 0.953 0.541 2.1e-38
TAIR|locus:2139504152 SK12 "AT4G34470" [Arabidopsis 0.9 0.947 0.530 2.4e-37
TAIR|locus:2093094152 SK10 "AT3G21860" [Arabidopsis 0.906 0.953 0.520 6.3e-37
TAIR|locus:2056956149 SK14 "AT2G03170" [Arabidopsis 0.881 0.946 0.530 2.7e-36
TAIR|locus:2093084153 SK9 "AT3G21850" [Arabidopsis t 0.906 0.947 0.510 3.5e-36
TAIR|locus:2165825 ASK2 "AT5G42190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 265 (98.3 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
 Identities = 47/81 (58%), Positives = 59/81 (72%)

Query:    80 DNDVKNWDRDFVKVDQETXXXXXXXXXXXXIKDLLELTCQATADVIKDKSPEEVRRIFHI 139
             D D+K WD +F+KVDQ T            IK LL+LTCQ  AD+IK K+PEE+R+ F+I
Sbjct:    91 DEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNI 150

Query:   140 NNDFTPQEEQEIRRENQWAFE 160
              NDFTP+EE+E+RRENQWAFE
Sbjct:   151 KNDFTPEEEEEVRRENQWAFE 171
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005737 "cytoplasm" evidence=NAS
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;RCA;TAS
GO:0019005 "SCF ubiquitin ligase complex" evidence=NAS
GO:0005515 "protein binding" evidence=IPI
GO:0009793 "embryo development ending in seed dormancy" evidence=IGI
GO:0042023 "DNA endoreduplication" evidence=RCA
GO:0042752 "regulation of circadian rhythm" evidence=RCA
GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0043248 "proteasome assembly" evidence=RCA
GO:0051510 "regulation of unidimensional cell growth" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
TAIR|locus:2204435 SKP1 "AT1G75950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198621 SK4 "AT1G20140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050281 SK3 "AT2G25700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080532 SK13 "AT3G60010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124281 SK11 "AT4G34210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139504 SK12 "AT4G34470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093094 SK10 "AT3G21860" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056956 SK14 "AT2G03170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093084 SK9 "AT3G21850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5KU00SKP1_ASPORNo assigned EC number0.45750.91250.9068yesno
Q6PEC4SKP1_RATNo assigned EC number0.47160.9250.9079yesno
Q9WTX5SKP1_MOUSENo assigned EC number0.47160.9250.9079yesno
Q557E4SKP1B_DICDINo assigned EC number0.49670.91250.9012yesno
Q9Y709SKP1_SCHPONo assigned EC number0.43870.91250.9068yesno
Q9LNT9ASK4_ARATHNo assigned EC number0.66450.94370.9263yesno
Q5ZKF5SKP1_CHICKNo assigned EC number0.47160.9250.9079yesno
P52285SKP1A_DICDINo assigned EC number0.50320.91250.9012yesno
Q4WTT8SKP1_ASPFUNo assigned EC number0.45800.9250.9367yesno
Q3ZCF3SKP1_BOVINNo assigned EC number0.47160.9250.9079yesno
Q5BAX8SKP1_EMENINo assigned EC number0.44930.93120.9254yesno
P63209SKP1_CAVPONo assigned EC number0.47160.9250.9079yesno
P63208SKP1_HUMANNo assigned EC number0.47160.9250.9079yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query160
smart00512104 smart00512, Skp1, Found in Skp1 protein family 6e-42
pfam0146678 pfam01466, Skp1, Skp1 family, dimerisation domain 2e-41
COG5201158 COG5201, SKP1, SCF ubiquitin ligase, SKP1 componen 5e-41
pfam0393161 pfam03931, Skp1_POZ, Skp1 family, tetramerisation 4e-25
COG0520 405 COG0520, csdA, Selenocysteine lyase/Cysteine desul 0.002
>gnl|CDD|214704 smart00512, Skp1, Found in Skp1 protein family Back     alignment and domain information 
 Score =  135 bits (341), Expect = 6e-42
 Identities = 57/105 (54%), Positives = 72/105 (68%), Gaps = 5/105 (4%)

Query: 10  KKMIILKSSDGETFEVEETVALQSQTIRHMVEDDCADSV----IPLPNVTGTILSMVVEY 65
            K I L SSDGE FEVE  VA QS+TI+ M+ED   D      IPLPNVT  ILS V+EY
Sbjct: 1   SKYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEY 60

Query: 66  CKKHVEAAAAAAGGDNDVKNWDRDFVKVDQETLLDLLLAANYLNI 110
           C+ HV+   + A   +D+  WD +F+K+DQETL +L+LAANYL+I
Sbjct: 61  CEHHVDDPPSVA-DKDDIPTWDAEFLKIDQETLFELILAANYLDI 104

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues. Length = 104
>gnl|CDD|201810 pfam01466, Skp1, Skp1 family, dimerisation domain Back     alignment and domain information
>gnl|CDD|227528 COG5201, SKP1, SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|217800 pfam03931, Skp1_POZ, Skp1 family, tetramerisation domain Back     alignment and domain information
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 160
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 100.0
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 100.0
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 99.97
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 99.96
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 99.82
KOG3473112 consensus RNA polymerase II transcription elongati 99.72
PHA02713 557 hypothetical protein; Provisional 98.84
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 98.81
PHA03098 534 kelch-like protein; Provisional 98.69
PHA02790 480 Kelch-like protein; Provisional 98.61
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 98.56
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 98.42
KOG4682 488 consensus Uncharacterized conserved protein, conta 96.59
KOG4350 620 consensus Uncharacterized conserved protein, conta 95.94
KOG2716230 consensus Polymerase delta-interacting protein PDI 95.16
PF11822 317 DUF3342: Domain of unknown function (DUF3342); Int 94.04
KOG3433203 consensus Protein involved in meiotic recombinatio 93.78
KOG0783 1267 consensus Uncharacterized conserved protein, conta 92.83
COG5124209 Protein predicted to be involved in meiotic recomb 91.56
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 88.31
KOG0511516 consensus Ankyrin repeat protein [General function 84.54
PF03962188 Mnd1: Mnd1 family; InterPro: IPR005647 This family 81.29
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=9.7e-48  Score=284.24  Aligned_cols=151  Identities=60%  Similarity=0.940  Sum_probs=139.0

Q ss_pred             CccEEEEcCCCCEEEecHHHHHHhHHHHHHHhhcC-CCC--ccccCCCCHHHHHHHHHHHHhchhhhhhc-c----CCCC
Q 044292           10 KKMIILKSSDGETFEVEETVALQSQTIRHMVEDDC-ADS--VIPLPNVTGTILSMVVEYCKKHVEAAAAA-A----GGDN   81 (160)
Q Consensus        10 ~~~i~l~s~DG~~~~v~~~~a~~S~~l~~~l~~~~-~~~--~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~-~----~~~~   81 (160)
                      .++|+|+|+||++|.|+.++|++|.+|++++.+.+ ...  +||||+|+|.+|++||+||+||+.+++.. +    ....
T Consensus         4 ~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~   83 (162)
T KOG1724|consen    4 KKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEET   83 (162)
T ss_pred             CCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccC
Confidence            36999999999999999999999999999998765 334  89999999999999999999999876432 1    3455


Q ss_pred             CccchhhhhccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHhCCCHHHHHHHcCCCCCCCHHHHHHHHHhcccccC
Q 044292           82 DVKNWDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFHINNDFTPQEEQEIRRENQWAFE  160 (160)
Q Consensus        82 ~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~eeir~~f~i~~d~t~eee~~~~~e~~w~~~  160 (160)
                      .+++||++|++++...||+|+.|||||+|++|+++||+.+|.+++|||++|||+.|||++|+|+||++++++++.|+|+
T Consensus        84 ~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~e~~~~~~  162 (162)
T KOG1724|consen   84 DIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRKENEWAFE  162 (162)
T ss_pred             CccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhhccccccC
Confidence            5999999999999999999999999999999999999999999999999999999999999999999999999999986

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only] Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query160
2p1m_A160 Tir1-ask1 Complex Structure Length = 160 5e-44
3l2o_A149 Structure-Based Mechanism Of Dimerization-Dependent 2e-30
1fqv_B149 Insights Into Scf Ubiquitin Ligases From The Struct 2e-30
1p22_B145 Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex 2e-29
2ast_A159 Crystal Structure Of The Skp1-Skp2-Cks1 Complex Len 2e-28
2e31_B166 Structural Basis For Selection Of Glycosylated Subs 2e-28
3mks_A169 Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH 3e-24
1fs1_B141 Insights Into Scf Ubiquitin Ligases From The Struct 4e-24
1nex_A169 Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp 5e-23
1ldk_D133 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 5e-21
>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure Length = 160 Back     alignment and structure 
Iteration: 1

 Score =  173 bits (438), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 90/153 (58%), Positives = 110/153 (71%), Gaps = 7/153 (4%)
Query: 15  LKSSDGETFEVEETVALQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEXXX 74
           LKSSDGE+FEVEE VAL+SQTI HMVEDDC D+ +PLPNVT  IL+ V+EYCK+HVE   
Sbjct: 8   LKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAA 67
Query: 75  X-------XXGGDNDVKNWDRDFVKVDQETXXXXXXXXXXXXIKDLLELTCQATADVIKD 127
                       D+D+K WD DF+K+DQ T            IK+LL+LTCQ  AD+IK 
Sbjct: 68  SKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKG 127
Query: 128 KSPEEVRRIFHINNDFTPQEEQEIRRENQWAFE 160
           K+PEE+R  F+I NDFTP+EE+E+RRENQWAFE
Sbjct: 128 KTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160
>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent Ubiquitination By The Scffbx4 Ubiquitin Ligase Length = 149 Back     alignment and structure
>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 149 Back     alignment and structure
>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 145 Back     alignment and structure
>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate By Scffbs1 Ubiquitin Ligase Length = 166 Back     alignment and structure
>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 169 Back     alignment and structure
>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 141 Back     alignment and structure
>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 169 Back     alignment and structure
>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 133 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query160
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 5e-55
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 3e-52
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 3e-48
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 2e-47
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 4e-36
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 3e-30
2fnj_C96 Transcription elongation factor B polypeptide 1; b 1e-28
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Length = 160 Back     alignment and structure
 Score =  169 bits (429), Expect = 5e-55
 Identities = 105/159 (66%), Positives = 129/159 (81%), Gaps = 7/159 (4%)

Query: 9   SKKMIILKSSDGETFEVEETVALQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKK 68
           S K I+LKSSDGE+FEVEE VAL+SQTI HMVEDDC D+ +PLPNVT  IL+ V+EYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 69  HVEAAAAAAGGD-------NDVKNWDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQAT 121
           HVEAAA+ A          +D+K WD DF+K+DQ TL +L+LAANYLNIK+LL+LTCQ  
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 122 ADVIKDKSPEEVRRIFHINNDFTPQEEQEIRRENQWAFE 160
           AD+IK K+PEE+R  F+I NDFTP+EE+E+RRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Length = 169 Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Length = 141 Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Length = 99 Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Length = 112 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Length = 96 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query160
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 100.0
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 100.0
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 100.0
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 100.0
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 99.95
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 99.94
2fnj_C96 Transcription elongation factor B polypeptide 1; b 99.94
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.91
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.17
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.12
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.07
2vpk_A116 Myoneurin; transcription regulation, transcription 99.0
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.0
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.0
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 98.99
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 98.99
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 98.96
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 98.94
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 98.92
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 98.9
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 98.88
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 98.78
3i3n_A 279 Kelch-like protein 11; structural genomics, BTB, K 98.77
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 98.76
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 98.7
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 98.66
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 98.65
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 98.63
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 94.15
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 88.17
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
Probab=100.00  E-value=1.4e-54  Score=324.12  Aligned_cols=154  Identities=43%  Similarity=0.777  Sum_probs=133.3

Q ss_pred             CCCCCccEEEEcCCCCEEEecHHHHHHhHHHHHHHhhcCC-----C--CccccCCCCHHHHHHHHHHHHhchhhhhhc--
Q 044292            6 ENNSKKMIILKSSDGETFEVEETVALQSQTIRHMVEDDCA-----D--SVIPLPNVTGTILSMVVEYCKKHVEAAAAA--   76 (160)
Q Consensus         6 ~~~~~~~i~l~s~DG~~~~v~~~~a~~S~~l~~~l~~~~~-----~--~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~--   76 (160)
                      .|++ ++|+|+|+||+.|.|++.+|.+|++|++|+++.+.     +  .+||||+|++.+|++|++||+||+.++++.  
T Consensus         3 ~m~~-~~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~   81 (169)
T 3v7d_A            3 HMVT-SNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDED   81 (169)
T ss_dssp             ---C-CEEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC--
T ss_pred             CCCC-CeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccc
Confidence            4655 79999999999999999999999999999997653     3  789999999999999999999999876432  


Q ss_pred             ---cCCCCCccchhhhhccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHhCCCHHHHHHHcCCCCCCCHHHHHHHHH
Q 044292           77 ---AGGDNDVKNWDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFHINNDFTPQEEQEIRR  153 (160)
Q Consensus        77 ---~~~~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~eeir~~f~i~~d~t~eee~~~~~  153 (160)
                         ......+++||++|++++.+.||+|+.||+||+|++|+++||++||++|+|||++|||++|||++||||||++++|+
T Consensus        82 ~~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~~ir~  161 (169)
T 3v7d_A           82 DDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRR  161 (169)
T ss_dssp             ------CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHHHHT
T ss_pred             cccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHH
Confidence               13466789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccC
Q 044292          154 ENQWAFE  160 (160)
Q Consensus       154 e~~w~~~  160 (160)
                      ||+|+||
T Consensus       162 en~W~~~  168 (169)
T 3v7d_A          162 ENEWAED  168 (169)
T ss_dssp             TC-----
T ss_pred             hcccccc
Confidence            9999997
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 160
d1nexa170 a.157.1.1 (A:116-185) Centromere DNA-binding prote 9e-34
d1hv2a_99 d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomy 1e-30
d2c9wc196 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens 2e-28
d1fs1b155 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, 1e-26
d1fs1b261 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Sk 1e-22
d1nexa272 d.42.1.1 (A:4-103) Centromere DNA-binding protein 9e-22
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 70 Back     information, alignment and structure

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (280), Expect = 9e-34
 Identities = 42/70 (60%), Positives = 57/70 (81%)

Query: 83  VKNWDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFHINND 142
           V +WDR+F+KVDQE L +++LAANYLNIK LL+  C+  A++I+ +SPEE+RR F+I ND
Sbjct: 1   VDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVND 60

Query: 143 FTPQEEQEIR 152
           FTP+EE  IR
Sbjct: 61  FTPEEEAAIR 70
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 99 Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Length = 96 Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query160
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 99.96
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 99.94
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 99.93
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 99.89
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 99.85
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 99.83
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.13
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 98.97
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.2e-29  Score=161.27  Aligned_cols=70  Identities=60%  Similarity=1.063  Sum_probs=67.3

Q ss_pred             ccchhhhhccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHhCCCHHHHHHHcCCCCCCCHHHHHHHH
Q 044292           83 VKNWDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFHINNDFTPQEEQEIR  152 (160)
Q Consensus        83 ~~~wd~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~eeir~~f~i~~d~t~eee~~~~  152 (160)
                      +++||++|++++.+.|++|+.||+||+|++|+++||+.||.+|+|||++|||++|||++|+||||++++|
T Consensus         1 i~~wD~~F~~~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ikgkt~eeiR~~f~I~~D~t~eEe~~ir   70 (70)
T d1nexa1           1 VDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIR   70 (70)
T ss_dssp             CCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHTCC
T ss_pred             CcHHHHHHHhcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHhcC
Confidence            4689999999999999999999999999999999999999999999999999999999999999998764
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure