Citrus Sinensis ID: 044348

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
EVRLLSQPCSSSIDSTAVSNHNERRDLMSTCTDLNLGLSISLSPEQRQRLDWPPIKSLLRSTLNKLAEKADENDGRHHHSQQYGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILCKSYYSQHFCALTFIFICVPAKVLNFTFI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccEEEEEEccccEEEEEcccccccHHHHHHHHHHHHccccccccccccccccEEEEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEccccccccccccccccccccccccccccccccccccccccccccEccccccHHHHHHHHHHccccccccccccccccccccEEEEEEccccccEEEEEHHHcccHHHHHHHHHHHHcccccEEEccccccccEEEEEEEEEEEccEEEEEEEc
Coil and Loop (DISEMBL)
evrllsqpcsssidstavsnhnerRDLMSTCTdlnlglsislspeqrqrldwppikSLLRSTLNKLAekadendgrhhhsqqyGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILCKSYYSQHFCALTFIFICvpakvlnftfi
Flexible Loop (DISEMBL)
evrllsqpcsssidstavsnhnerRDLMSTCTDLNLGLsislspeqrqrldwppIKSLLRSTLNKLAEkadendgrhhhsqqyGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILCKSYYSQHFCALTFIFICVPAKVLNFTFI
Low Complexity Region (SEG)
EVRLLSQPCSSSIDSTAVSNHNERRDLMSTCTDLNLGLSISLSPEQRQRLDWPPIKSLLRSTLNKLAEKADENDGRHHHSQQYGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILCKSYYSQHFCALTFIFICVPAKVLNFTFI
Disordered region (IsUnstruct)
******************************CTDLNLGL*******************************************QYGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILCKSYYSQHFCALTFIFICVPAKVLNFTF*
Disordered Region (DISOPRED)
EVRLL**********************************************************************************VKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTT**********HFCALTFIFICVPAKVLNFTFI
Disordered Region (DISEMBL)
*****************VSNHNERRDLMSTCTDLNLGLSISLSPEQRQRLDWPPIKSLLRSTLNKLAE************QQYGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILCKSYYSQHFCALTFIFICVPAKVLNFTFI
Disordered Region (DISPRO)
**********************************************RQRLDWPPIKSLLRSTLNKL****************YGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILCKSYYSQHFCALTFIFICVPAKVLNFTFI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
EVRLLSQPCSSSIDSTAVSNHNERRDLMSTCTDLNLGLSISLSPEQRQRLDWPPIKSLLRSTLNKLAEKADENDGRHHHSQQYGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILCKSYYSQHFCALTFIFICVPAKVLNFTFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	157	2.2.26 [Sep-21-2011]
Q8H174	158	Auxin-responsive protein	yes	no	0.566	0.563	0.472	2e-17
Q38829	246	Auxin-responsive protein	no	no	0.509	0.325	0.384	4e-10
Q38827	338	Auxin-responsive protein	no	no	0.458	0.213	0.407	9e-10
Q6Z5M0	205	Auxin-responsive protein	yes	no	0.605	0.463	0.407	1e-08
P0C127	228	Auxin-responsive protein	no	no	0.452	0.311	0.364	2e-08
Q9M1R4	172	Auxin-responsive protein	no	no	0.242	0.220	0.605	2e-07
A2ZRY8	203	Auxin-responsive protein	no	no	0.649	0.502	0.395	2e-07
A2WNM0	203	Auxin-responsive protein	N/A	no	0.649	0.502	0.395	2e-07
P49679	189	Auxin-induced protein IAA	N/A	no	0.719	0.597	0.268	2e-07
Q69TU6	265	Auxin-responsive protein	no	no	0.541	0.320	0.307	3e-07

>sp|Q8H174|IAA31_ARATH Auxin-responsive protein IAA31 OS=Arabidopsis thaliana GN=IAA31 PE=2 SV=2

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 65/108 (60%), Gaps = 19/108 (17%)

Query: 34  LNLGLSI---SLSPEQRQRLDWPPIKSLLRSTLN--KLAEKADENDGRHHHSQQYGSLFV 88
           +NL LS+   S SP++  R DWPPIKS LR TL   +L  + D+            SLFV
Sbjct: 27  VNLSLSLTFPSTSPQREARQDWPPIKSRLRDTLKGRRLLRRGDDT-----------SLFV 75

Query: 89  KVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILCKSYYSQH 136
           KVYMEG+PIGRKLDL    GY +L+  LSHMF    T+I+C +   +H
Sbjct: 76  KVYMEGVPIGRKLDLCVFSGYESLLENLSHMF---DTSIICGNRDRKH 120

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38829|IAA11_ARATH Auxin-responsive protein IAA11 OS=Arabidopsis thaliana GN=IAA11 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 11/91 (12%)

Query: 41  SLSPEQRQRLDWPPIKSL-LRSTLNKLAEKADE----------NDGRHHHSQQYGSLFVK 89
           S++    Q + WPPI++  + S +N+    A E          N  R   ++   S+FVK
Sbjct: 81  SMAATSGQVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVK 140

Query: 90  VYMEGIPIGRKLDLFAHHGYNALVTTLSHMF 120
           V M+GIPIGRK+DL AH  Y +L  TL  MF
Sbjct: 141 VTMDGIPIGRKIDLNAHKCYESLSNTLEEMF 171

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38827|IAA9_ARATH Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 4/76 (5%)

Query: 46  QRQRLDWPPIKSLLRSTLNKLAEKADENDGRHHHSQQYGSLFVKVYMEGIPIGRKLDLFA 105
           + Q + WPP++S  ++TL    + +DE DGR       G+LFVKV M+G P  RK+DL +
Sbjct: 181 KAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGS----GALFVKVSMDGAPYLRKVDLRS 236

Query: 106 HHGYNALVTTLSHMFT 121
           +  Y  L + L  MFT
Sbjct: 237 YTNYGELSSALEKMFT 252

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z5M0|IAA8_ORYSJ Auxin-responsive protein IAA8 OS=Oryza sativa subsp. japonica GN=IAA8 PE=2 SV=2

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 52/103 (50%), Gaps = 8/103 (7%)

Query: 23  ERRDLMSTCTDLNLGLSISLSPEQRQRLDWPPIKSLLRSTLNKLAEKADENDGRHHHSQQ 82
           +RR L+ST  DL LGL++S            P  SL  +T+        +  G      +
Sbjct: 49  KRRSLIST--DLRLGLTLSSVVHIDGNNPSTPRSSLTTATVTA------DRGGGGGGHGR 100

Query: 83  YGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTT 125
             SLFVKVYMEG+PIGRKLDL    GY  LV  L+ MF    T
Sbjct: 101 RRSLFVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRASIT 143

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C127|IAA16_ORYSJ Auxin-responsive protein IAA16 OS=Oryza sativa subsp. japonica GN=IAA16 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 50  LDWPPIKSLLRSTLNKLAEKADENDGRHHHSQQYG---SLFVKVYMEGIPIGRKLDLFAH 106
           + WPP++S  R+  +  +       GR   +   G   + FVKV M+G+PIGRK+DL AH
Sbjct: 59  VGWPPVRSFRRNLASSSSSSKPPRGGRDAAAAATGGKVARFVKVNMDGVPIGRKVDLAAH 118

Query: 107 HGYNALVTTLSHMF 120
            GY  L   +  +F
Sbjct: 119 GGYGELSAAVDRLF 132

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M1R4|IAA30_ARATH Auxin-responsive protein IAA30 OS=Arabidopsis thaliana GN=IAA30 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 31/38 (81%)

Query: 84  GSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFT 121
           GS +VKV MEG+PIGRK+DL + +GY+ L+TTL +MF 
Sbjct: 81  GSFYVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFN 118

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|A2ZRY8|IAA4_ORYSJ Auxin-responsive protein IAA4 OS=Oryza sativa subsp. japonica GN=IAA4 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 63/134 (47%), Gaps = 32/134 (23%)

Query: 15  STAVSNHNERRDLMSTCTDLNLGLS----------------------ISLSPEQRQ-RLD 51
           ST  S    RRDL    TDL LGLS                      I  +P   Q   D
Sbjct: 24  STTSSAATARRDL---STDLRLGLSLSTSSSSSLLQAAAAAAAADDSIPSTPRNSQVHAD 80

Query: 52  WPPIKSLLRSTLNKLAEKADENDGRHHHSQQYGSLFVKVYMEGIPIGRKLDLFAHHGYNA 111
           WPPIK  LRS L K +            +++  +LFVKVYMEG+PIGRKLDL    GY++
Sbjct: 81  WPPIKPFLRSALQKASAAGGGG------ARRRRTLFVKVYMEGVPIGRKLDLLLLDGYDS 134

Query: 112 LVTTLSHMFTIKTT 125
           L+  L HMF    T
Sbjct: 135 LLIKLCHMFKTPIT 148

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WNM0|IAA4_ORYSI Auxin-responsive protein IAA4 OS=Oryza sativa subsp. indica GN=IAA4 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 63/134 (47%), Gaps = 32/134 (23%)

Query: 15  STAVSNHNERRDLMSTCTDLNLGLS----------------------ISLSPEQRQ-RLD 51
           ST  S    RRDL    TDL LGLS                      I  +P   Q   D
Sbjct: 24  STTSSAATARRDL---STDLRLGLSLSTSSSSSLLQAAAAAAAADDSIPSTPRNSQVHAD 80

Query: 52  WPPIKSLLRSTLNKLAEKADENDGRHHHSQQYGSLFVKVYMEGIPIGRKLDLFAHHGYNA 111
           WPPIK  LRS L K +            +++  +LFVKVYMEG+PIGRKLDL    GY++
Sbjct: 81  WPPIKPFLRSALQKASAAGGGG------ARRRRTLFVKVYMEGVPIGRKLDLLLLDGYDS 134

Query: 112 LVTTLSHMFTIKTT 125
           L+  L HMF    T
Sbjct: 135 LLIKLCHMFKTPIT 148

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P49679|IAA4_PEA Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA4/5 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 25/138 (18%)

Query: 15  STAVSNHNERR---------DLMSTCTDLNLGLSISLSPEQRQRL-DWPPIKSLLRSTLN 64
           S+ V N+N+R+          +     D ++  S S +P  + ++  WPPI+S  +++L 
Sbjct: 27  SSVVKNNNKRQLPQTSEESVSISKVTNDEHIVESSSAAPPAKAKIVGWPPIRSYRKNSL- 85

Query: 65  KLAEKADENDGRHHHSQQYGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKT 124
                         H    G +FVKV M+G P  RK+DL  + GY+ L+  L  MF +  
Sbjct: 86  --------------HEADVGGIFVKVSMDGAPYLRKIDLRVYGGYSELLKALETMFKLTI 131

Query: 125 TNILCKSYYSQHFCALTF 142
                +  Y     A T+
Sbjct: 132 GEYSEREGYKGSEYAPTY 149

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Pisum sativum (taxid: 3888)

>sp|Q69TU6|IAA22_ORYSJ Auxin-responsive protein IAA22 OS=Oryza sativa subsp. japonica GN=IAA22 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 19/104 (18%)

Query: 36  LGLSISLSPEQR-----QRLDWPPIKSLLRST-----------LNKLAEKADENDGRHHH 79
           +G   + S E R     Q + WPP+++  ++            +NK+   +DE  G    
Sbjct: 23  MGAGWNESGENRAASSAQLVGWPPVRTFRKNLSTPKPADADDLMNKMKPCSDEGHGSRDA 82

Query: 80  SQQY---GSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMF 120
           +Q+     ++FVKV +EG  +GRK+DL AH  Y++L   L  MF
Sbjct: 83  AQERRPSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMF 126

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
147859763	181	hypothetical protein VITISV_035323 [Viti	0.745	0.646	0.446	2e-20
225432228	198	PREDICTED: auxin-responsive protein IAA3	0.592	0.469	0.516	2e-18
225437764	175	PREDICTED: auxin-responsive protein IAA4	0.592	0.531	0.5	3e-18
147854286	1328	hypothetical protein VITISV_026538 [Viti	0.528	0.062	0.509	7e-18
351722520	257	uncharacterized protein LOC100527448 [Gl	0.541	0.330	0.532	4e-17
357479247	184	Auxin-responsive protein IAA4 [Medicago	0.636	0.543	0.484	4e-16
297834672	158	predicted protein [Arabidopsis lyrata su	0.566	0.563	0.481	4e-16
304322695	157	indole-3-acetic acid inducible 31 [Arabi	0.566	0.566	0.472	1e-15
298108643	155	indole-3-acetic acid inducible 31 [Arabi	0.566	0.574	0.472	1e-15
304322697	158	indole-3-acetic acid inducible 31 [Arabi	0.566	0.563	0.472	1e-15

>gi|147859763|emb|CAN83139.1| hypothetical protein VITISV_035323 [Vitis vinifera]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/150 (44%), Positives = 87/150 (58%), Gaps = 33/150 (22%)

Query: 15  STAVSNHNERRDLMSTCTDLNLGLSISLSPE-------QRQRLDWPPIKSLLRSTLNKLA 67
           S+A S    +RDL    TDL+LGLSIS S         + Q+ DWPPIK+LLR  L    
Sbjct: 21  SSASSFPRLKRDL---STDLSLGLSISTSDHHYCPSTPREQQSDWPPIKTLLRKALAGEG 77

Query: 68  EKADENDGRHHHSQQYGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNI 127
            K ++            + FVKVYMEGIPIGRKLDLFAH GY+AL+ TL HMF   +T I
Sbjct: 78  NKCND-----------ATFFVKVYMEGIPIGRKLDLFAHDGYHALIRTLDHMF---STTI 123

Query: 128 LCKSYYSQHFCALTFIFICVP-AKVLNFTF 156
           LCKS+         F+ +C   ++++N +F
Sbjct: 124 LCKSH--------IFLLMCSSQSEIINDSF 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432228|ref|XP_002275515.1| PREDICTED: auxin-responsive protein IAA31 [Vitis vinifera] gi|297736834|emb|CBI26035.3| unnamed protein product [Vitis vinifera]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/118 (51%), Positives = 71/118 (60%), Gaps = 25/118 (21%)

Query: 22  NERRDLMSTCTDLNLGLSISLS---------PEQR-QRLDWPPIKSLLRSTLNKLAEKAD 71
           N +R  +ST  DL LG SIS +         P  R QR+DWPPIK LLRSTL        
Sbjct: 44  NTKRSGLST--DLRLGPSISTAHIHHCSSSAPSPRDQRVDWPPIKPLLRSTLT------- 94

Query: 72  ENDGRHHHSQQYGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILC 129
              G+  + +Q  +LFVKVYMEGI IGRKLDLFA+ GY+ LV TLSHMF    T I C
Sbjct: 95  ---GKADNQRQATNLFVKVYMEGISIGRKLDLFAYSGYDGLVATLSHMF---KTTIFC 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437764|ref|XP_002281145.1| PREDICTED: auxin-responsive protein IAA4 [Vitis vinifera] gi|297744081|emb|CBI37051.3| unnamed protein product [Vitis vinifera]

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 69/114 (60%), Gaps = 21/114 (18%)

Query: 15  STAVSNHNERRDLMSTCTDLNLGLSISLSPE-------QRQRLDWPPIKSLLRSTLNKLA 67
           S+A S    +RDL    TDL+LGLSIS S         + Q+ DWPPIK+LLR  L    
Sbjct: 21  SSASSFPRLKRDL---STDLSLGLSISTSDHHYCPSTPREQQSDWPPIKTLLRKALAGEG 77

Query: 68  EKADENDGRHHHSQQYGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFT 121
            K ++            + FVKVYMEGIPIGRKLDLFAH GY+AL+ TL HMF+
Sbjct: 78  NKCND-----------ATFFVKVYMEGIPIGRKLDLFAHDGYHALIRTLDHMFS 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854286|emb|CAN81307.1| hypothetical protein VITISV_026538 [Vitis vinifera]

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 53/104 (50%), Positives = 63/104 (60%), Gaps = 21/104 (20%)

Query: 34   LNLGLSISLSPEQR--------QRLDWPPIKSLLRSTLNKLAEKADENDGRHHHSQQYGS 85
            L +  S  ++PE R        QR+DWPPIK LLRSTL           G+  + +Q  +
Sbjct: 1014 LAVSFSRCINPECRSGLYFLRDQRVDWPPIKPLLRSTLT----------GKADNQRQATN 1063

Query: 86   LFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILC 129
            LFVKVYMEGI IGRKLDLFA+ GY+ LV TLSHMF    T I C
Sbjct: 1064 LFVKVYMEGISIGRKLDLFAYSGYDGLVATLSHMF---KTTIFC 1104

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722520|ref|NP_001236223.1| uncharacterized protein LOC100527448 [Glycine max] gi|255632380|gb|ACU16540.1| unknown [Glycine max]

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/107 (53%), Positives = 65/107 (60%), Gaps = 22/107 (20%)

Query: 32  TDLNLGLSISL---------SPEQRQRLDWPPIKSLLRSTLNKLAEKADENDGRHHHSQQ 82
           TDL LGLSIS          S  + +  DWP IKS+LRSTL           G+  +  Q
Sbjct: 118 TDLRLGLSISPSSQSESPFNSTRREESFDWPSIKSILRSTLV----------GKQSYLSQ 167

Query: 83  YGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILC 129
             SLFVKVYMEGIPIGRKL+L AH+GY+ LV TL HMF    TNILC
Sbjct: 168 RPSLFVKVYMEGIPIGRKLNLMAHYGYDGLVKTLGHMF---RTNILC 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479247|ref|XP_003609909.1| Auxin-responsive protein IAA4 [Medicago truncatula] gi|355510964|gb|AES92106.1| Auxin-responsive protein IAA4 [Medicago truncatula]

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 72/126 (57%), Gaps = 26/126 (20%)

Query: 25  RDLMSTCTDLNLGLSISLSPE----QRQRLDWPPI-KSLLRSTLNKLAEKADENDGRHHH 79
           R+     TDL LGLSIS S +    + +  DWPPI KS+LRSTL   AEK          
Sbjct: 44  RNRTDLSTDLKLGLSISPSSQSQLPREETCDWPPINKSILRSTL---AEK---------- 90

Query: 80  SQQYGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILC---KSYYSQH 136
             Q  SLFVKVYMEGIPIGRKL+L  HH Y+ L+  L HMF    T ILC   +   S +
Sbjct: 91  --QRPSLFVKVYMEGIPIGRKLNLLEHHSYDGLIKALCHMF---RTTILCPNSQPLNSWN 145

Query: 137 FCALTF 142
           F  LT+
Sbjct: 146 FHVLTY 151

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834672|ref|XP_002885218.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297331058|gb|EFH61477.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 66/108 (61%), Gaps = 19/108 (17%)

Query: 34  LNLGLSI---SLSPEQRQRLDWPPIKSLLRSTLN--KLAEKADENDGRHHHSQQYGSLFV 88
           +NL LS+   S SP++  R DWPPIKS LR TL   +L  + D+            SLFV
Sbjct: 27  VNLSLSLTFPSTSPQREARQDWPPIKSRLRDTLKGRRLLRRGDDT-----------SLFV 75

Query: 89  KVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILCKSYYSQH 136
           KVYMEG+PIGRKLDL A  GY +L+  LSHMF    T+I+C +   +H
Sbjct: 76  KVYMEGVPIGRKLDLCAFSGYESLLENLSHMF---DTSIICGNRDRKH 120

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|304322695|gb|ADL70800.1| indole-3-acetic acid inducible 31 [Arabidopsis thaliana] gi|304322711|gb|ADL70808.1| indole-3-acetic acid inducible 31 [Arabidopsis thaliana]

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 65/108 (60%), Gaps = 19/108 (17%)

Query: 34  LNLGLSI---SLSPEQRQRLDWPPIKSLLRSTLN--KLAEKADENDGRHHHSQQYGSLFV 88
           +NL LS+   S SP++  R DWPPIKS LR TL   +L  + D+            SLFV
Sbjct: 26  VNLSLSLTFPSTSPQREARQDWPPIKSRLRDTLKGRRLLRRGDDT-----------SLFV 74

Query: 89  KVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILCKSYYSQH 136
           KVYMEG+PIGRKLDL    GY +L+  LSHMF    T+I+C +   +H
Sbjct: 75  KVYMEGVPIGRKLDLCVFSGYESLLENLSHMF---DTSIICGNRDRKH 119

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298108643|gb|ADB93684.2| indole-3-acetic acid inducible 31 [Arabidopsis thaliana]

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 65/108 (60%), Gaps = 19/108 (17%)

Query: 34  LNLGLSI---SLSPEQRQRLDWPPIKSLLRSTLN--KLAEKADENDGRHHHSQQYGSLFV 88
           +NL LS+   S SP++  R DWPPIKS LR TL   +L  + D+            SLFV
Sbjct: 26  VNLSLSLTFPSTSPQREARQDWPPIKSRLRDTLKGRRLLRRGDDT-----------SLFV 74

Query: 89  KVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILCKSYYSQH 136
           KVYMEG+PIGRKLDL    GY +L+  LSHMF    T+I+C +   +H
Sbjct: 75  KVYMEGVPIGRKLDLCVFSGYESLLENLSHMF---DTSIICGNRDRKH 119

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|304322697|gb|ADL70801.1| indole-3-acetic acid inducible 31 [Arabidopsis thaliana]

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 65/108 (60%), Gaps = 19/108 (17%)

Query: 34  LNLGLSI---SLSPEQRQRLDWPPIKSLLRSTLN--KLAEKADENDGRHHHSQQYGSLFV 88
           +NL LS+   S SP++  R DWPPIKS LR TL   +L  + D+            SLFV
Sbjct: 27  VNLSLSLTFPSTSPQREARQDWPPIKSRLRDTLKGRRLLRRGDDT-----------SLFV 75

Query: 89  KVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILCKSYYSQH 136
           KVYMEG+PIGRKLDL    GY +L+  LSHMF    T+I+C +   +H
Sbjct: 76  KVYMEGVPIGRKLDLCVFSGYESLLENLSHMF---DTSIICGNRDRKH 120

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
TAIR|locus:2090527	158	IAA31 "indole-3-acetic acid in	0.707	0.702	0.433	2e-17
UNIPROTKB|Q6Z5M0	205	IAA8 "Auxin-responsive protein	0.662	0.507	0.419	5e-12
TAIR|locus:2169955	338	IAA9 "indole-3-acetic acid ind	0.509	0.236	0.406	1.6e-11
TAIR|locus:2098023	172	IAA30 "indole-3-acetic acid in	0.675	0.616	0.368	3.2e-10
TAIR|locus:2041324	175	IAA20 "indole-3-acetic acid in	0.700	0.628	0.357	5.2e-10
UNIPROTKB|Q75GB1	257	IAA17 "Auxin-responsive protei	0.484	0.295	0.384	1.9e-09
TAIR|locus:2139890	302	IAA11 "indole-3-acetic acid in	0.509	0.264	0.384	4.7e-09
TAIR|locus:2180557	175	IAA28 "AT5G25890" [Arabidopsis	0.764	0.685	0.265	3.3e-08
TAIR|locus:2018379	189	SHY2 "SHORT HYPOCOTYL 2" [Arab	0.643	0.534	0.310	3.3e-08
UNIPROTKB|Q6ZL57	219	IAA24 "Auxin-responsive protei	0.503	0.360	0.361	4.7e-08

TAIR|locus:2090527 IAA31 "indole-3-acetic acid inducible 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 59/136 (43%), Positives = 77/136 (56%)

Query:    10 SSSIDSTAVSNHNERRDLMSTCTDLNLGLSI-SLSPEQRQRLDWPPIKSLLRSTLN--KL 66
             SSS+DST  S          +  +L+L L+  S SP++  R DWPPIKS LR TL   +L
Sbjct:    12 SSSVDSTKPSPSE-------SSVNLSLSLTFPSTSPQREARQDWPPIKSRLRDTLKGRRL 64

Query:    67 AEKADENDGRHHHSQQYGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTN 126
               + D+            SLFVKVYMEG+PIGRKLDL    GY +L+  LSHMF    T+
Sbjct:    65 LRRGDDT-----------SLFVKVYMEGVPIGRKLDLCVFSGYESLLENLSHMFD---TS 110

Query:   127 ILCKSYYSQHFCALTF 142
             I+C +   +H   LT+
Sbjct:   111 IICGNRDRKHH-VLTY 125

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009630 "gravitropism" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

UNIPROTKB|Q6Z5M0 IAA8 "Auxin-responsive protein IAA8" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 47/112 (41%), Positives = 59/112 (52%)

Query:    23 ERRDLMSTCTDLNLGLSISLSPEQRQRLDWPPIKSLLRSTLNKLAEKADENDGRHHHSQQ 82
             +RR L+ST  DL LGL++S        +D     S  RS+L      AD   G   H ++
Sbjct:    49 KRRSLIST--DLRLGLTLS----SVVHIDGNN-PSTPRSSLTTATVTADRGGGGGGHGRR 101

Query:    83 YGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILCKSYYS 134
               SLFVKVYMEG+PIGRKLDL    GY  LV  L+ MF    T   C   ++
Sbjct:   102 R-SLFVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRASITYHHCHRQFA 152

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2169955 IAA9 "indole-3-acetic acid inducible 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
 Identities = 35/86 (40%), Positives = 49/86 (56%)

Query:    41 SLSPE--QRQRLDWPPIKSLLRSTLNKLAEKADENDGRHHHSQQYGSLFVKVYMEGIPIG 98
             S SP   + Q + WPP++S  ++TL    + +DE DGR       G+LFVKV M+G P  
Sbjct:   174 SSSPPAAKAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGS----GALFVKVSMDGAPYL 229

Query:    99 RKLDLFAHHGYNALVTTLSHMFTIKT 124
             RK+DL ++  Y  L + L  MFT  T
Sbjct:   230 RKVDLRSYTNYGELSSALEKMFTTFT 255

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2098023 IAA30 "indole-3-acetic acid inducible 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 42/114 (36%), Positives = 61/114 (53%)

Query:    10 SSSIDSTAVSNHN--ERRDLMSTCTDLNLGLSISLSPEQRQRL-DWPPIKSLLRSTLNKL 66
             SSSI+S+  SN       +  +  TDL LGLS   S  Q     D      +  +    +
Sbjct:     9 SSSIESSCKSNPFGVSSSNTRNLSTDLRLGLSFGSSSGQYYNGGDNHEYDGVGAAEEMMI 68

Query:    67 AEKADENDGRHHHSQQYGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMF 120
              E+ ++N+         GS +VKV MEG+PIGRK+DL + +GY+ L+TTL +MF
Sbjct:    69 MEEEEQNE-----CNSVGSFYVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMF 117

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA;TAS

GO:0009630 "gravitropism" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2041324 IAA20 "indole-3-acetic acid inducible 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 40/112 (35%), Positives = 55/112 (49%)

Query:    10 SSSIDSTAVSN-HNERRDLMSTCTDLNLGLSISLSPEQRQRLDWPPIKSLLRSTLNKLAE 68
             SSSI+S++ SN         +  TDL LGLS   S    Q  +     S+    +     
Sbjct:     9 SSSIESSSKSNPFGASSSTRNLSTDLRLGLSFGTS-SGTQYFNGGYGYSVAAPAVEDAEY 67

Query:    69 KADENDGRHHHSQQYGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMF 120
              A   +   +     GS +VKV MEG+PIGRK+DL + +GY  L+ TL  MF
Sbjct:    68 VAAVEEEEENECNSVGSFYVKVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMF 119

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;TAS

GO:0009630 "gravitropism" evidence=IMP

GO:0009647 "skotomorphogenesis" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048364 "root development" evidence=IMP

UNIPROTKB|Q75GB1 IAA17 "Auxin-responsive protein IAA17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 121 (47.7 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
 Identities = 30/78 (38%), Positives = 41/78 (52%)

Query:    48 QRLDWPPIKSLLRSTLNKLAEKADENDGRHHHSQQYGSLFVKVYMEGIPIGRKLDLFAHH 107
             Q + WPPI+S  ++T+     K+ + D      Q  G L+VKV M+G P  RK+DL  + 
Sbjct:   116 QVVGWPPIRSYRKNTMATNQLKSSKEDAEAKQGQ--GFLYVKVSMDGAPYLRKVDLKTYK 173

Query:   108 GYNALVTTLSHMFTIKTT 125
              Y  L T L  MF   TT
Sbjct:   174 NYKDLSTALEKMFIGFTT 191

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2139890 IAA11 "indole-3-acetic acid inducible 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 35/91 (38%), Positives = 49/91 (53%)

Query:    41 SLSPEQRQRLDWPPIKSL-LRSTLNKLAEKADE----------NDGRHHHSQQYGSLFVK 89
             S++    Q + WPPI++  + S +N+    A E          N  R   ++   S+FVK
Sbjct:    81 SMAATSGQVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVK 140

Query:    90 VYMEGIPIGRKLDLFAHHGYNALVTTLSHMF 120
             V M+GIPIGRK+DL AH  Y +L  TL  MF
Sbjct:   141 VTMDGIPIGRKIDLNAHKCYESLSNTLEEMF 171

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2180557 IAA28 "AT5G25890" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 35/132 (26%), Positives = 66/132 (50%)

Query:     1 EVRLLSQPCSSSIDSTAVSNHNERRDLMSTCTDLNLGLSISLSPEQRQRLDWPPIKSLLR 60
             E+RL + PC     +  ++   ++     T    N    + ++P     + WPP++S  R
Sbjct:     8 ELRL-APPCHQFTSNNNINGSKQKSSTKETSFLSNN--RVEVAPV----VGWPPVRSSRR 60

Query:    61 STLNKLAEKADENDGRHHHSQQYGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMF 120
             +   +L E+  + +     S +   L+VK+ MEG+PIGRK++L A++ Y  L   +  +F
Sbjct:    61 NLTAQLKEEMKKKE-----SDEEKELYVKINMEGVPIGRKVNLSAYNNYQQLSHAVDQLF 115

Query:   121 TIKTTNILCKSY 132
             + K +  L + Y
Sbjct:   116 SKKDSWDLNRQY 127

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2018379 SHY2 "SHORT HYPOCOTYL 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 36/116 (31%), Positives = 62/116 (53%)

Query:     9 CSSSIDSTAVSNHNERRDLMSTCTDLNLGLS---ISLSPEQR-QRLDWPPIKSLLRSTLN 64
             C +    +  +N+N+R  ++ST T+  +  S      SP ++ Q + WPP++S  +   N
Sbjct:    23 CEAKERVSCCNNNNKR--VLSTDTEKEIESSSRKTETSPPRKAQIVGWPPVRSYRK---N 77

Query:    65 KLAEKADENDGRHHHSQQYGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMF 120
              +  K +E++   H  Q    ++VKV M+G P  RK+DL  + GY+ L+  L  MF
Sbjct:    78 NIQSKKNESE---HEGQ---GIYVKVSMDGAPYLRKIDLSCYKGYSELLKALEVMF 127

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

UNIPROTKB|Q6ZL57 IAA24 "Auxin-responsive protein IAA24" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 126 (49.4 bits), Expect = 4.7e-08, P = 4.7e-08
 Identities = 30/83 (36%), Positives = 44/83 (53%)

Query:    43 SPEQRQRLDWPPIKSLLRSTLNKLAEKADEN----DGRHHHSQQYGSLFVKVYMEGIPIG 98
             +P + Q + WPP+++  R+T ++ A  A       D +    QQ G L+VKV M+G P  
Sbjct:    83 APAKAQVVGWPPVRAYRRNTFHQAAAAAAATKKGGDEKQKQQQQGGGLYVKVSMDGAPYL 142

Query:    99 RKLDLFAHHGYNALVTTLSHMFT 121
             RK+DL    GY  L   L  +FT
Sbjct:   143 RKVDLKMCKGYRELREALDLLFT 165

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019741001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (198 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	157
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	9e-10

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score = 54.2 bits (131), Expect = 9e-10
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 16/77 (20%)

Query: 44  PEQRQRLDWPPIKSLLRSTLNKLAEKADENDGRHHHSQQYGSLFVKVYMEGIPIGRKLDL 103
           P + Q + WPP++S  +   N L EK                 +VKV M+G P  RK+DL
Sbjct: 65  PAKAQVVGWPPVRSYRK---NSLREKKSG-------------SYVKVSMDGAPYLRKVDL 108

Query: 104 FAHHGYNALVTTLSHMF 120
             +  Y+ L + L  MF
Sbjct: 109 KMYKSYDELSSALEKMF 125

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	99.98

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=99.98  E-value=4.5e-34  Score=232.66  Aligned_cols=142  Identities=25%  Similarity=0.394  Sum_probs=5.4

Q ss_pred             CceecCCCCCCCc----ccccccCCCCCCCCCCccccc-------------cCCCCC-------------CCCCCcc-Cc
Q 044348            1 EVRLLSQPCSSSI----DSTAVSNHNERRDLMSTCTDL-------------NLGLSI-------------SLSPEQR-QR   49 (157)
Q Consensus         1 ELrLglpg~~~s~----~s~~~s~~~~kR~~~~~~~Dl-------------~lgl~~-------------s~~ps~~-~~   49 (157)
                      ||||||||.++..    .+.......+||.|+++..+.             ......             ...|..+ ++
T Consensus         7 ELrLGLPG~~~~~~~~~~~~~~~~~~~kR~F~~aid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~   86 (215)
T PF02309_consen    7 ELRLGLPGSESPDASSSSSSKKSSSGNKRGFSEAIDSSSSNSQSSSSSSSDSSSSSSSSSTSSSSSDSSSSSPPASKAQV   86 (215)
T ss_dssp             -------------------------------------------------------------------------------B
T ss_pred             hhcccCCCCCCCCcccccccccccCcccccchhhhhhcccccccccccccccCcccccccccccccccccCCCCcccccc
Confidence            8999999998654    333334456789887632110             000000             0002233 46


Q ss_pred             ccCCCcchhHHhhhhhhhhcccccCCCCCccCCCCcceEEEeecCcceeeeeecCCCCChHHHHHHHHHhhcccccc---
Q 044348           50 LDWPPIKSLLRSTLNKLAEKADENDGRHHHSQQYGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTN---  126 (157)
Q Consensus        50 VGWPPVrs~Rkn~~~~~~~~~~~~~~~~~~~~~~~s~~VKV~MdG~pigRKvDL~~~~~Y~~L~~~L~~MF~~~~~~---  126 (157)
                      ||||||++||+|.+....             .....+||||+|||+||||||||++|+||++|+.+|++||.+++..   
T Consensus        87 vgwpp~~s~r~n~~~~~~-------------~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~  153 (215)
T PF02309_consen   87 VGWPPVRSFRKNSLSEKQ-------------SSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCG  153 (215)
T ss_dssp             TTBS----S-----------------------------------------------------------------------
T ss_pred             cCCCcccccccccccccc-------------cccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCccccc
Confidence            799999999998887221             1234789999999999999999999999999999999999544322   


Q ss_pred             ---------------ccc------cc---------cCCCceeeEEeEEeechhhhcccc
Q 044348          127 ---------------ILC------KS---------YYSQHFCALTFIFICVPAKVLNFT  155 (157)
Q Consensus       127 ---------------~~~------~e---------~~~~~e~v~tYe~i~~~~~~~~~~  155 (157)
                                     ..|      .|         .|.+|+-++...+||+.+|+++|+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~e~~~~~  212 (215)
T PF02309_consen  154 SHGLNESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSSEAKGLA  212 (215)
T ss_dssp             -----------------------------------------------------------
T ss_pred             cccccchhhccccCCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHHHhcccC
Confidence                           011      11         388888888889999999999985

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00