Citrus Sinensis ID: 044367

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450
MPSSHAILLLSLITLPFTSTRIFTSTTAAPAAGKPKRLVTKLLHRDSLLYNPNDTVDAQAQRTLNMSMARFIYLSQKSSQKAHDTRAHLHPGISTVPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSDEQFTGVFGLGPATSSTHSLVEKVGSKFSYCIGNLNYFEYAYNMLILGEGAILEGDSTPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQESSSVFCLAVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRIDCELLADD
cccHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEcccccEEEEEEEccccccEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEEEEEEcccccccEEccEEEEEEccccccccccccEEEEcccccccHHHHHHHccccEEEEEccccccccccEEEEccccccccccccccccccccEEEEEEEEEEccEEEcccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHcccccccccccccccEEccccccccccccEEEEEccccEEEEccccEEEEEcccEEEEEEEEccccccccccEEEEEEEEEEEEEEEEEccccEEEEEcccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEccccccEEEEEEcccccEEEEcccccccccccccccccccccccccccHHccccccccccccEEEEEEcccccccEEEEEEEEEEccEEccccccccEEEEccccccccEcccccEEEEcccccccccccccccccEEEEEEccccccccccEEEEEccccccccEEEEccccccEEEEEEEEEEEccEEEEccHHHEEccccccccEEEEEcccEEEcccHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccccccccccEEEEEEEcccEccccHHHEEEEccccEEEEEEccccccccccccEEEEEEEEEccEEEEEEccccEEEEccccHHHHHcc
MPSSHAILLLSLItlpftstriftsttaapaagkpkRLVTKLLHrdsllynpndtvDAQAQRTLNMSMARFIYLSQKssqkahdtrahlhpgistvPVFYVNfsigqppvpqlavldtgssliwvkcqpceqcgattfdpsksltyatlpcdssyctndcggypdecwynirytngpdsqgtigseqfnfetsdegktflydvgfgcshnnahfsdeqftgvfglgpatsstHSLVEKVGSKFSYCIGNLNYFEYAYNMLILGegailegdstpmsvidgsyyVTLEgislgekmldidpnlfkkndtwsdagvfidsgttltwlVPSAYQTLRKEVEDLFQgllpsypmdpawhlcysgninrdlqgfpamafhfaggaDLVLDAESVFYQESSSVFClavgpsdingerfkdLSIIGMIAQQNYNVAYDLVSKQLYFQRIDCELLADD
MPSSHAILLLSLITLPFTSTRIFTsttaapaagkpkRLVTKLLHrdsllynpndTVDAQAQRTLNMSMARFIYLSQKSSQKAHDTRAHLHPGISTVPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSDEQFTGVFGLGPATSSTHSLVEKVGSKFSYCIGNLNYFEYAYNMLILGEGAILEGDSTPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQESSSVFCLAVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRIDCELLADD
MPSSHAILLLSLITLPFTSTRIFTSTTAAPAAGKPKRLVTKLLHRDSLLYNPNDTVDAQAQRTLNMSMARFIYLSQKSSQKAHDTRAHLHPGISTVPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSDEQFTGVFGLGPATSSTHSLVEKVGSKFSYCIGNLNYFEYAYNMLILGEGAILEGDSTPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQESSSVFCLAVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRIDCELLADD
*****AILLLSLITLPFTSTRIFTSTTAAPAAGKPKRLVTKLLHRDSLLYNPNDTVDAQAQRTLNMSMARFIYL************AHLHPGISTVPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRYTNG***********FNFETSDEGKTFLYDVGFGCSHNNAHFSDEQFTGVFGLGPATSSTHSLVEKVGSKFSYCIGNLNYFEYAYNMLILGEGAILEGDSTPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQESSSVFCLAVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRIDCELL***
***SHAILLLSLITLPFTSTRIFT*****************LLHRDS**********************************************STVPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPC***************CWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSDEQFTGVFGLGPATSSTHSLVEKVGSKFSYCIGNLNY*E**YNMLILGEGAILEGDSTPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTLTWLVPSAYQTLRKEVEDL**********DPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQESSSVFCLAVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRIDCEL****
MPSSHAILLLSLITLPFTSTRIFTSTTAAPAAGKPKRLVTKLLHRDSLLYNPNDTVDAQAQRTLNMSMARFIYLS***********AHLHPGISTVPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSDEQFTGVFGLGPATSSTHSLVEKVGSKFSYCIGNLNYFEYAYNMLILGEGAILEGDSTPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQESSSVFCLAVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRIDCELLADD
**SSHAILLLSLITLPFTSTRIFTSTTAAPAAGKPKRLVTKLLHRDSLLYNPNDTVDAQAQRTLNMSMARFIYLSQKSSQKAHDTRAHLHPGISTVPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSDEQFTGVFGLGPATSSTHSLVEKVGSKFSYCIGNLNYFEYAYNMLILGEGAILEGDSTPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQESSSVFCLAVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRIDCELLADD
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPSSHAILLLSLITLPFTSTRIFTSTTAAPAAGKPKRLVTKLLHRDSLLYNPNDTVDAQAQRTLNMSMARFIYLSQKSSQKAHDTRAHLHPGISTVPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSDEQFTGVFGLGPATSSTHSLVEKVGSKFSYCIGNLNYFEYAYNMLILGEGAILEGDSTPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQESSSVFCLAVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRIDCELLADD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query450 2.2.26 [Sep-21-2011]
Q766C3437 Aspartic proteinase nepen N/A no 0.726 0.748 0.339 1e-43
Q6XBF8437 Aspartic proteinase CDR1 no no 0.88 0.906 0.311 2e-41
Q3EBM5447 Probable aspartic proteas no no 0.875 0.881 0.303 1e-40
Q766C2438 Aspartic proteinase nepen N/A no 0.846 0.869 0.306 3e-37
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.691 0.622 0.3 6e-27
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.822 0.787 0.282 3e-26
Q9LZL3453 Aspartic proteinase PCS1 no no 0.726 0.721 0.258 2e-22
Q9S9K4475 Aspartic proteinase-like no no 0.777 0.736 0.226 3e-19
Q9LX20528 Aspartic proteinase-like no no 0.715 0.609 0.235 1e-15
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.76 0.834 0.231 2e-10
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function desciption
 Score =  177 bits (449), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/359 (33%), Positives = 177/359 (49%), Gaps = 32/359 (8%)

Query: 99  FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQC---GATTFDPSKSLTYATLPCDSSY 155
           + +N SIG P  P  A++DTGS LIW +CQPC QC       F+P  S +++TLPC S  
Sbjct: 95  YLMNLSIGTPAQPFSAIMDTGSDLIWTQCQPCTQCFNQSTPIFNPQGSSSFSTLPCSSQL 154

Query: 156 C----TNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNN 211
           C    +  C    + C Y   Y +G ++QG++G+E   F     G   + ++ FGC  NN
Sbjct: 155 CQALSSPTCSN--NFCQYTYGYGDGSETQGSMGTETLTF-----GSVSIPNITFGCGENN 207

Query: 212 AHFSDEQFTGVFGLGPATSSTHSLVEKVGSKFSYCIGNLNYFEYAYNMLILGEGAILEGD 271
             F      G+ G+G    S  S ++   +KFSYC+  +       N+L+      +   
Sbjct: 208 QGFGQGNGAGLVGMGRGPLSLPSQLDV--TKFSYCMTPIGS-STPSNLLLGSLANSVTAG 264

Query: 272 STPMSVIDGS-----YYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTLTWLV 326
           S   ++I  S     YY+TL G+S+G   L IDP+ F  N      G+ IDSGTTLT+ V
Sbjct: 265 SPNTTLIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFV 324

Query: 327 PSAYQTLRKEVEDLFQGLLPSY-PMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLD 385
            +AYQ++R+E   + Q  LP        + LC+    +      P    HF GG DL L 
Sbjct: 325 NNAYQSVRQEF--ISQINLPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHFDGG-DLELP 381

Query: 386 AESVFYQESSSVFCLAVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRIDC 444
           +E+ F   S+ + CLA+G S       + +SI G I QQN  V YD  +  + F    C
Sbjct: 382 SENYFISPSNGLICLAMGSSS------QGMSIFGNIQQQNMLVVYDTGNSVVSFASAQC 434
Extracellular proteinase found in the pitcher fluid of carnivorous plants. Digest prey for nitrogen uptake.
Nepenthes gracilis (taxid: 150966)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: 1EC: 2
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query450
255585473448 Aspartic proteinase nepenthesin-1 precur 0.951 0.955 0.463 1e-106
224091849438 predicted protein [Populus trichocarpa] 0.871 0.894 0.488 1e-102
225446261440 PREDICTED: aspartic proteinase nepenthes 0.873 0.893 0.454 2e-93
147786881408 hypothetical protein VITISV_008929 [Viti 0.873 0.963 0.454 3e-93
296090291408 unnamed protein product [Vitis vinifera] 0.873 0.963 0.454 3e-93
449516339456 PREDICTED: probable aspartic protease At 0.953 0.940 0.445 4e-93
449457263469 PREDICTED: probable aspartic protease At 0.953 0.914 0.435 3e-92
356558300447 PREDICTED: aspartic proteinase nepenthes 0.913 0.919 0.443 2e-90
356532672449 PREDICTED: aspartic proteinase nepenthes 0.913 0.915 0.439 5e-88
356498789446 PREDICTED: probable aspartic protease At 0.924 0.932 0.441 1e-87
>gi|255585473|ref|XP_002533429.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] gi|223526717|gb|EEF28949.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/455 (46%), Positives = 278/455 (61%), Gaps = 27/455 (5%)

Query: 9   LLSLITLPFTSTRIFTSTTAAPAAGKPKRLVTKLLHRDSLL---YNPNDTVDAQAQRTLN 65
           L+SL  L FT+  + T         +PK+LVTKL+H  S+L   +NPN +V  +A+R + 
Sbjct: 7   LVSLGLLIFTT--LVTGNIVEAYNAQPKQLVTKLIHWGSILSPYFNPNASVAERAERIVK 64

Query: 66  MSMARFIYLSQKSSQKAH--DTRAHLHPGISTVPVFYVNFSIGQPPVPQLAVLDTGSSLI 123
            S  R  YL  +     H  D   +L P  +  P+F VNFS+GQP  PQLA++DTGS+++
Sbjct: 65  TSATRIAYLYAQIKGDIHMNDFELNLLPS-TYEPLFLVNFSMGQPATPQLAIMDTGSNIL 123

Query: 124 WVKCQPCEQC---GATTFDPSKSLTYATLPCDSSYCTNDCGGYPD---ECWYNIRYTNGP 177
           WV+C PC++C        DPSKS TYA+LPC ++ C      Y +   +C YN+ Y  G 
Sbjct: 124 WVRCAPCKRCTQQNGPLLDPSKSSTYASLPCTNTMCHYAPSAYCNRLNQCGYNLSYATGL 183

Query: 178 DSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSDEQFTGVFGLGPATSSTHSLVE 237
            S G + +EQ  F +SDEG   +  V FGCSH N  + D +FTGVFGLG   +S    V 
Sbjct: 184 SSAGVLATEQLIFHSSDEGVNAVPSVVFGCSHENGDYKDRRFTGVFGLGKGITS---FVT 240

Query: 238 KVGSKFSYCIGNLNYFEYAYNMLILGEGAILEGDSTPMSVIDGSYYVTLEGISLGEKMLD 297
           ++GSKFSYC+GN+    Y YN L+ GE A  EG STP+ V++G YYVTLEGIS+GEK LD
Sbjct: 241 RMGSKFSYCLGNIADPHYGYNQLVFGEKANFEGYSTPLKVVNGHYYVTLEGISVGEKRLD 300

Query: 298 IDPNLFKKNDTWSDAGVFIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWH-- 355
           ID   F        A   IDSGT LTWL  SA++ L  EV  L  G+L      P W   
Sbjct: 301 IDSTAFSMKGNEKSA--LIDSGTALTWLAESAFRALDNEVRQLLDGVLM-----PFWRGS 353

Query: 356 -LCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQESSSVFCLAVGPSDINGERFKD 414
             CY G +++DL GFP + FHF+GGADL LD ES+FYQ +  + C+AV  +   G  FK 
Sbjct: 354 FACYKGTVSQDLIGFPVVTFHFSGGADLDLDTESMFYQATPDILCIAVRQASAYGNDFKS 413

Query: 415 LSIIGMIAQQNYNVAYDLVSKQLYFQRIDCELLAD 449
            S+IG++AQQ YN+AYDL S +L+FQRIDC+LL D
Sbjct: 414 FSVIGLMAQQYYNMAYDLNSNKLFFQRIDCQLLVD 448

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224091849|ref|XP_002309371.1| predicted protein [Populus trichocarpa] gi|222855347|gb|EEE92894.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225446261|ref|XP_002265547.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147786881|emb|CAN62311.1| hypothetical protein VITISV_008929 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296090291|emb|CBI40110.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449516339|ref|XP_004165204.1| PREDICTED: probable aspartic protease At2g35615-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449457263|ref|XP_004146368.1| PREDICTED: probable aspartic protease At2g35615-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356558300|ref|XP_003547445.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356532672|ref|XP_003534895.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356498789|ref|XP_003518231.1| PREDICTED: probable aspartic protease At2g35615-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query450
TAIR|locus:505006268458 AT2G23945 [Arabidopsis thalian 0.902 0.886 0.398 1.4e-80
TAIR|locus:2126495424 AT4G30030 [Arabidopsis thalian 0.824 0.875 0.42 2.8e-73
TAIR|locus:2126505427 AT4G30040 [Arabidopsis thalian 0.793 0.836 0.401 4.5e-66
TAIR|locus:2145954437 CDR1 "CONSTITUTIVE DISEASE RES 0.911 0.938 0.321 3.7e-48
TAIR|locus:504955954447 AT2G35615 [Arabidopsis thalian 0.9 0.906 0.312 6.2e-46
TAIR|locus:2206184445 AT1G31450 [Arabidopsis thalian 0.922 0.932 0.306 8.1e-44
TAIR|locus:2010786431 AT1G64830 [Arabidopsis thalian 0.911 0.951 0.308 3.5e-43
TAIR|locus:2056916461 AT2G03200 [Arabidopsis thalian 0.833 0.813 0.328 9.3e-43
TAIR|locus:2123196389 UND "UNDEAD" [Arabidopsis thal 0.713 0.825 0.320 6.1e-39
TAIR|locus:2057831396 AT2G28010 [Arabidopsis thalian 0.708 0.805 0.299 1.5e-33
TAIR|locus:505006268 AT2G23945 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 175/439 (39%), Positives = 253/439 (57%)

Query:    34 KPKRLVTKLLHRDSLL-YNPNDTV----DAQAQRTLNMSMARFIYLSQKSSQK---AHDT 85
             KP R+  KL+HR+S+   NPN  V    +   +   ++S ARF YL Q S  K   + + 
Sbjct:    25 KPNRMAMKLIHRESVARLNPNARVPITPEDHIKHLTDISSARFKYL-QNSIDKELGSSNF 83

Query:    86 RAHLHPGISTVPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGAT-----TFDP 140
             +  +   I T  +F VNFS+GQPPVPQL ++DTGSSL+W++CQPC+ C +       F+P
Sbjct:    84 QVDVEQAIKT-SLFLVNFSVGQPPVPQLTIMDTGSSLLWIQCQPCKHCSSDHMIHPVFNP 142

Query:   141 SKSLTYATLPCDSSYC----TNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEG 196
             + S T+    CD  +C       CG   ++C Y   Y +G  S+G +  E+  F T +  
Sbjct:   143 ALSSTFVECSCDDRFCRYAPNGHCGS-SNKCVYEQVYISGTGSKGVLAKERLTFTTPNGN 201

Query:   197 KTFLYDVGFGCSHNNAHFSDEQFTGVFGLGPATSSTHSLVEKVGSKFSYCIGNLNYFEYA 256
                   + FGC + N    +  FTG+ GLG   +S   L  ++GSKFSYCIG+L    Y 
Sbjct:   202 TVVTQPIAFGCGYENGEQLESHFTGILGLGAKPTS---LAVQLGSKFSYCIGDLANKNYG 258

Query:   257 YNMLILGEGAILEGDSTPMSV-IDGS-YYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGV 314
             YN L+LGE A + GD TP+    + S YY+ LEGIS+G+  L+I+P +FK+    +  GV
Sbjct:   259 YNQLVLGEDADILGDPTPIEFETENSIYYMNLEGISVGDTQLNIEPVVFKRRGPRT--GV 316

Query:   315 FIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAF 374
              +DSGT  TWL   AY+ L  E++ +    L  +       LCY G ++ +L GFP + F
Sbjct:   317 ILDSGTLYTWLADIAYRELYNEIKSILDPKLERFWFRD--FLCYHGRVSEELIGFPVVTF 374

Query:   375 HFAGGADLVLDAESVFYQESS----SVFCLAVGPSDINGERFKDLSIIGMIAQQNYNVAY 430
             HFAGGA+L ++A S+FY  S     +VFC++V P+  +G  +K+ + IG++AQQ YN+ Y
Sbjct:   375 HFAGGAELAMEATSMFYPLSEPNTFNVFCMSVKPTKEHGGEYKEFTAIGLMAQQYYNIGY 434

Query:   431 DLVSKQLYFQRIDCELLAD 449
             DL  K +Y QRIDC  L D
Sbjct:   435 DLKEKNIYLQRIDCVQLDD 453
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
TAIR|locus:2126495 AT4G30030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126505 AT4G30040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145954 CDR1 "CONSTITUTIVE DISEASE RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955954 AT2G35615 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206184 AT1G31450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010786 AT1G64830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056916 AT2G03200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123196 UND "UNDEAD" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057831 AT2G28010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.766
3rd Layer3.4.23.120.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_VI001275
hypothetical protein (438 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query450
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 3e-72
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 1e-68
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 4e-45
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 4e-34
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 1e-20
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 1e-10
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 2e-10
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 3e-10
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 4e-10
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 2e-06
cd05486316 cd05486, Cathespin_E, Cathepsin E, non-lysosomal a 1e-04
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 3e-04
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 4e-04
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 7e-04
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information 
 Score =  228 bits (583), Expect = 3e-72
 Identities = 108/352 (30%), Positives = 140/352 (39%), Gaps = 94/352 (26%)

Query: 99  FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCTN 158
           + V  SIG PP P   ++DTGS L W +C                               
Sbjct: 2   YLVTLSIGTPPQPFSLIVDTGSDLTWTQC------------------------------- 30

Query: 159 DCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSDEQ 218
                   C Y   Y +G  + G + +E F F  S      + +V FGC  +N   S   
Sbjct: 31  --------CSYEYSYGDGSSTSGVLATETFTFGDSSVS---VPNVAFGCGTDNEGGSFGG 79

Query: 219 FTGVFGLGPATSSTHSLVEKVGSKFSYCIGNLNYFEYAYNMLILGEGAIL---EGDSTPM 275
             G+ GLG    S  S +   G+KFSYC+   +      + LILG+ A L       TP+
Sbjct: 80  ADGILGLGRGPLSLVSQLGSTGNKFSYCLVPHDD-TGGSSPLILGDAADLGGSGVVYTPL 138

Query: 276 ---SVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTLTWLVPSAYQT 332
                    YYV LEGIS+G K L I P++F  +   S  G  IDSGTTLT+L   AY  
Sbjct: 139 VKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGS-GGTIIDSGTTLTYLPDPAY-- 195

Query: 333 LRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQ 392
                                                P +  HF GGADL L  E+ F  
Sbjct: 196 -------------------------------------PDLTLHFDGGADLELPPENYFVD 218

Query: 393 ESSSVFCLAVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRIDC 444
               V CLA+  S   G     +SI+G I QQN+ V YDL + +L F   DC
Sbjct: 219 VGEGVVCLAILSSSSGG-----VSILGNIQQQNFLVEYDLENSRLGFAPADC 265

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. Length = 265
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 450
PLN03146431 aspartyl protease family protein; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.97
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.94
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.89
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 98.17
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 96.78
PF1365090 Asp_protease_2: Aspartyl protease 96.54
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 95.28
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 93.49
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 93.05
PF11925370 DUF3443: Protein of unknown function (DUF3443); In 92.24
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 91.44
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 90.68
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 90.0
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 87.61
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 82.92
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 82.58
PF1365090 Asp_protease_2: Aspartyl protease 80.91
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.9e-70  Score=549.76  Aligned_cols=393  Identities=34%  Similarity=0.575  Sum_probs=318.2

Q ss_pred             cCCCCceEEEEEcccCCCC---CCCCChhHHHHHHHHhhHHHHHHHhhccccccCccccccccCCCCcceEEEEEEECCC
Q 044367           32 AGKPKRLVTKLLHRDSLLY---NPNDTVDAQAQRTLNMSMARFIYLSQKSSQKAHDTRAHLHPGISTVPVFYVNFSIGQP  108 (450)
Q Consensus        32 ~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~iGtP  108 (450)
                      .+++.+++++|+||++||.   .++.+..++++++++|+++|++++.++...   ..++..... .+.++|+++|.||||
T Consensus        19 ~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~---~~~~~~~~~-~~~~~Y~v~i~iGTP   94 (431)
T PLN03146         19 EAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDAS---PNDPQSDLI-SNGGEYLMNISIGTP   94 (431)
T ss_pred             cccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcccc---CCccccCcc-cCCccEEEEEEcCCC
Confidence            3366899999999999872   456667899999999999999998654321   112222222 234799999999999


Q ss_pred             CceEEEEEECCCCceeEeCCCCCCCCC---CCCCCCCCCcceeecCCCCCCC-----CCCCCCCCCceeEeeeCCCCccc
Q 044367          109 PVPQLAVLDTGSSLIWVKCQPCEQCGA---TTFDPSKSLTYATLPCDSSYCT-----NDCGGYPDECWYNIRYTNGPDSQ  180 (450)
Q Consensus       109 ~q~~~~~~DTGSs~~wv~~~~C~~C~~---~~y~p~~SsT~~~~~c~~~~C~-----~~c~~~~~~~~~~~~Yg~gs~~~  180 (450)
                      ||++.|++||||+++||+|.+|..|..   +.|||++|+||+.++|.++.|.     ..|. .++.|.|.+.|+||+.+.
T Consensus        95 pq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~-~~~~c~y~i~Ygdgs~~~  173 (431)
T PLN03146         95 PVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCS-DENTCTYSYSYGDGSFTK  173 (431)
T ss_pred             CceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCC-CCCCCeeEEEeCCCCcee
Confidence            999999999999999999999999974   8999999999999999999998     2365 234699999999999889


Q ss_pred             eeEEEEEEEeecCCCCceeeeeEEEEeEecCCCCCCCCcceeeecCCCCCCCCcHHhhh----cCceEEeecCCCCCCcc
Q 044367          181 GTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSDEQFTGVFGLGPATSSTHSLVEKV----GSKFSYCIGNLNYFEYA  256 (450)
Q Consensus       181 G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GIlGLg~~~~~~~sl~~ql----~~~Fs~~l~~~~~~~~~  256 (450)
                      |.+++|+|+|++..+....++++.|||++...+.|....+||||||++   ..|+++||    .++|||||.+..+....
T Consensus       174 G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~---~~Sl~sql~~~~~~~FSycL~~~~~~~~~  250 (431)
T PLN03146        174 GNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGG---PLSLISQLGSSIGGKFSYCLVPLSSDSNG  250 (431)
T ss_pred             eEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCC---CccHHHHhhHhhCCcEEEECCCCCCCCCC
Confidence            999999999987544446789999999998887665458999999999   99999997    35899999864332234


Q ss_pred             cceEEecCCCc---Ccceeccccc--CCCceEEEEeeEEECCEEeecCCcccccCCCcCCCceEEeccCceeecchHHHH
Q 044367          257 YNMLILGEGAI---LEGDSTPMSV--IDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTLTWLVPSAYQ  331 (450)
Q Consensus       257 ~G~l~fG~~~d---~~~~~~pl~~--~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~  331 (450)
                      .|.|+||+...   ..+.|+||..  ++.+|+|+|++|+||++.+.++...|...+   .+.+||||||++++||+++|+
T Consensus       251 ~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~---~g~~iiDSGTt~t~Lp~~~y~  327 (431)
T PLN03146        251 TSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVE---EGNIIIDSGTTLTLLPSDFYS  327 (431)
T ss_pred             cceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCC---CCcEEEeCCccceecCHHHHH
Confidence            58899996432   2367899942  357999999999999999988766554222   568999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecCCCEEEeCCCceEEEeCCCeEEEEEEeCCCCCCC
Q 044367          332 TLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQESSSVFCLAVGPSDINGER  411 (450)
Q Consensus       332 ~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~  411 (450)
                      +++++|.+.+... ........+.+|+....   ...+|+|+|+|+ |+++.|++++|++...++..|+++....     
T Consensus       328 ~l~~~~~~~~~~~-~~~~~~~~~~~C~~~~~---~~~~P~i~~~F~-Ga~~~l~~~~~~~~~~~~~~Cl~~~~~~-----  397 (431)
T PLN03146        328 ELESAVEEAIGGE-RVSDPQGLLSLCYSSTS---DIKLPIITAHFT-GADVKLQPLNTFVKVSEDLVCFAMIPTS-----  397 (431)
T ss_pred             HHHHHHHHHhccc-cCCCCCCCCCccccCCC---CCCCCeEEEEEC-CCeeecCcceeEEEcCCCcEEEEEecCC-----
Confidence            9999999887532 11111223679997431   147899999998 9999999999999877778999987543     


Q ss_pred             CCCceeeehhhhcceEEEEECCCCEEEEEcCCCCCc
Q 044367          412 FKDLSIIGMIAQQNYNVAYDLVSKQLYFQRIDCELL  447 (450)
Q Consensus       412 ~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~~~c~~~  447 (450)
                        +.+|||+.|||++|||||++++|||||+.+|+++
T Consensus       398 --~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~~  431 (431)
T PLN03146        398 --SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTKM  431 (431)
T ss_pred             --CceEECeeeEeeEEEEEECCCCEEeeecCCcCcC
Confidence              2499999999999999999999999999999874

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query450
1dp5_A329 The Structure Of Proteinase A Complexed With A Ia3 5e-05
1g0v_A329 The Structure Of Proteinase A Complexed With A Ia3 7e-05
2jxr_A329 Structure Of Yeast Proteinase A Length = 329 7e-05
1tzs_A351 Crystal Structure Of An Activation Intermediate Of 4e-04
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant Inhibitor Length = 329 Back     alignment and structure 
Iteration: 1

 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 74/356 (20%)
Query: 99  FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGA------TTFDPSKSLTYATLPCD 152
           +Y + ++G PP     +LDTGSS +WV   P  +CG+      + +D   S +Y     +
Sbjct: 15  YYTDITLGTPPQNFKVILDTGSSNLWV---PSNECGSLACFLHSKYDHEASSSYKANGTE 71
Query: 153 SS--YCTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHN 210
            +  Y T    GY  +   +I          TI  + F   TS+ G TF +         
Sbjct: 72  FAIQYGTGSLEGYISQDTLSI-------GDLTIPKQDFAEATSEPGLTFAFG-------- 116
Query: 211 NAHFSDEQFTGVFGLGPATSSTHSLVEKV----------GSKFSYCIGNLNYFEYAYNML 260
                  +F G+ GLG  T S   +V               +F++ +G+ +         
Sbjct: 117 -------KFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEA 169
Query: 261 ILG--EGAILEGDSTPMSVIDGSYY-VTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFID 317
             G  + +  +GD T + V   +Y+ V  EGI LG++  +++ +           G  ID
Sbjct: 170 TFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESH-----------GAAID 218
Query: 318 SGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNIN-RDLQGFPAMAFHF 376
           +GT+L  L     + +  E+                W   Y+ + N RD    P + F+F
Sbjct: 219 TGTSLITLPSGLAEMINAEIG-----------AKKGWTGQYTLDCNTRD--NLPDLIFNF 265
Query: 377 AGGADLVLDAESVFYQESSSVFCLAVGPSDINGERFKDLSIIGMIAQQNYNVAYDL 432
             G +  +       + S S    A+ P D   E    L+I+G    + Y   YDL
Sbjct: 266 -NGYNFTIGPYDYTLEVSGSCIS-AITPMDFP-EPVGPLAIVGDAFLRKYYSIYDL 318
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant, Mvv Length = 329 Back     alignment and structure
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A Length = 329 Back     alignment and structure
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of Cathepsin E Length = 351 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query450
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 4e-68
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 4e-61
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 1e-60
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 2e-13
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 2e-13
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 1e-12
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 3e-12
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 3e-12
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 3e-12
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 4e-11
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 4e-10
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 7e-10
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 1e-09
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 2e-09
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 2e-09
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 2e-09
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 3e-09
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 6e-09
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 1e-08
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 2e-08
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 5e-08
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 8e-08
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 1e-07
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 2e-07
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 5e-07
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 2e-06
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 2e-06
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 2e-06
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 3e-06
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 7e-06
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 7e-05
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 1e-04
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  221 bits (564), Expect = 4e-68
 Identities = 53/373 (14%), Positives = 103/373 (27%), Gaps = 35/373 (9%)

Query: 99  FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCG---ATTFDPSKSLTYATLPCDSSY 155
            + N     P +    ++D   + +WV C+         A     ++     T  C S  
Sbjct: 23  HWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQCSRANTHQCLSCP 82

Query: 156 CTNDCGGYPDEC-WYNIRYTNGPDSQGTIGSEQFNFETSDEGKTF------LYDVGFGCS 208
             +  G + + C   +          G +G +      +            +    F C+
Sbjct: 83  AASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCA 142

Query: 209 HNN--AHFSDEQFTGVFGLGPATSSTHSLVEK---VGSKFSYCIGNLNYFEYAYNMLILG 263
            +            GV GLG A  S  + +     +  +F+ C   L+ +  +   +I G
Sbjct: 143 PSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTC---LSRYPTSKGAIIFG 199

Query: 264 EGAILEGDSTPMSVIDGS------------YYVTLEGISLGEKMLDIDPNLFKKNDTWSD 311
           +            +                Y V +  I + +  +     +       + 
Sbjct: 200 DAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNKISSTIVGSTS 259

Query: 312 AGVFIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPA 371
            G  I + T    L  S YQ   +                  + LC++ N          
Sbjct: 260 GGTMISTSTPHMVLQQSVYQAFTQVFAQQ-LPKQAQVKSVAPFGLCFNSNKINAYP-SVD 317

Query: 372 MAFHFAGGADLVLDAESVFYQESSSVFCLAVGPSDINGERFKDLSIIGMIAQQNYNVAYD 431
           +      G    +  E +  Q    V CL V    +          +G    +   V +D
Sbjct: 318 LVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPR---AEITLGARQLEENLVVFD 374

Query: 432 LVSKQLYFQRIDC 444
           L   ++ F     
Sbjct: 375 LARSRVGFSTSSL 387
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query450
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.87
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.69
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 94.13
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 93.51
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 92.3
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 89.3
2hs1_A99 HIV-1 protease; ultra-high resolution active site 84.11
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 83.78
3liy_A116 Protease; hydrolase, hydrolase-hydrolase inhibitor 81.3
3ec0_A99 Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1 80.74
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=2.4e-58  Score=462.59  Aligned_cols=341  Identities=18%  Similarity=0.305  Sum_probs=269.2

Q ss_pred             ccccccCCCCcceEEEEEEECCCCceEEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCcceeecCCCCCCC----CCC-
Q 044367           86 RAHLHPGISTVPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCT----NDC-  160 (450)
Q Consensus        86 ~~~~~~~~~~~~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~C~~~~y~p~~SsT~~~~~c~~~~C~----~~c-  160 (450)
                      .+++..+... ++|+++|.||||||++.|+|||||+++||+|.+|          .+|+||+.+.|.++.|.    ..| 
T Consensus        10 ~~pv~~d~~~-~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c----------~~Sst~~~v~C~s~~C~~~~~~~~~   78 (413)
T 3vla_A           10 VVPVKKDAST-LQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN----------YVSSTYRPVRCRTSQCSLSGSIACG   78 (413)
T ss_dssp             EEEEEECTTT-CCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS----------CCCTTCEECBTTSHHHHHTTCCEEE
T ss_pred             EEEeeecCCC-CeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC----------CCCCCcCccCCCcccccccccCCCc
Confidence            4566666554 8999999999999999999999999999999876          47999999999999887    122 


Q ss_pred             --CC------CCCCceeEeee-CCCCccceeEEEEEEEeecCCCC----ceeeeeEEEEeEecC--CCCCCCCcceeeec
Q 044367          161 --GG------YPDECWYNIRY-TNGPDSQGTIGSEQFNFETSDEG----KTFLYDVGFGCSHNN--AHFSDEQFTGVFGL  225 (450)
Q Consensus       161 --~~------~~~~~~~~~~Y-g~gs~~~G~~~~D~v~~~~~~~~----~~~~~~~~fg~~~~~--~~~~~~~~~GIlGL  225 (450)
                        ..      .++.|.|.+.| ++|+.+.|++++|+|+|+..++.    .+.++++.|||++.+  .+.+ ..++|||||
T Consensus        79 ~c~s~~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~-~~~dGIlGL  157 (413)
T 3vla_A           79 DCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLA-SGVVGMAGL  157 (413)
T ss_dssp             CCSSCCBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSC-TTCCEEEEC
T ss_pred             ccccCCCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCcc-ccccccccc
Confidence              11      13569999999 48777899999999999853322    368899999999986  3433 368999999


Q ss_pred             CCCCCCCCcHHhhh------cCceEEeecCCCCCCcccceEEecCCCc---------Cc-ceecccccC-----------
Q 044367          226 GPATSSTHSLVEKV------GSKFSYCIGNLNYFEYAYNMLILGEGAI---------LE-GDSTPMSVI-----------  278 (450)
Q Consensus       226 g~~~~~~~sl~~ql------~~~Fs~~l~~~~~~~~~~G~l~fG~~~d---------~~-~~~~pl~~~-----------  278 (450)
                      |++   ..|+++||      +++|||||.+..   ...|+|+||+.+.         .+ +.|+||...           
T Consensus       158 g~~---~lSl~sql~~~~~i~~~FS~cL~~~~---~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~  231 (413)
T 3vla_A          158 GRT---RIALPSQFASAFSFKRKFAMCLSGST---SSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQG  231 (413)
T ss_dssp             SSS---SSSHHHHHHHHHTCCSEEEEECCSCS---SSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTT
T ss_pred             CCC---CcchHHHHhhhcCCCceEEEeCCCCC---CCceEEEECCCcccccccccccCCceeEeecccCCcccccccccc
Confidence            999   99999997      379999999842   2348999996542         13 789999433           


Q ss_pred             --CCceEEEEeeEEECCEEeecCCcccccCCCcCCCceEEeccCceeecchHHHHHHHHHHHHHHhc-cCCCCCCCCCcc
Q 044367          279 --DGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTLTWLVPSAYQTLRKEVEDLFQG-LLPSYPMDPAWH  355 (450)
Q Consensus       279 --~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~  355 (450)
                        ..+|+|+|++|+||++.+.+++..|..+. .+.+.+||||||++++||+++|++|+++|.+.+.. .+++......+.
T Consensus       232 ~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~-~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~  310 (413)
T 3vla_A          232 EPSVEYFIGVKSIKINSKIVALNTSLLSISS-AGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFG  310 (413)
T ss_dssp             CCCCSCEECCCEEEETTEEECCCGGGTSBCT-TSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTTCS
T ss_pred             CCCceEEEEEEEEEECCEEccCCchhccccc-CCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCCCc
Confidence              27999999999999999988776664321 01578999999999999999999999999998752 122222223468


Q ss_pred             ccccCccCC---cccCCCeEEEEecC-CCEEEeCCCceEEEeCCCeEEEEEEeCCCCCCCCCCceeeehhhhcceEEEEE
Q 044367          356 LCYSGNINR---DLQGFPAMAFHFAG-GADLVLDAESVFYQESSSVFCLAVGPSDINGERFKDLSIIGMIAQQNYNVAYD  431 (450)
Q Consensus       356 ~C~~~~~~~---~~~~~P~i~f~f~g-g~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD  431 (450)
                      .|+......   ....+|+|+|+|+| +++|+|++++|+++..++..|++++......   ++.||||+.|||++|+|||
T Consensus       311 ~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~---~~~~IlGd~fl~~~~vvfD  387 (413)
T 3vla_A          311 ACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNL---RTSIVIGGHQLEDNLVQFD  387 (413)
T ss_dssp             CEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSC---SSSEEECHHHHTTEEEEEE
T ss_pred             ceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCc---ccceeEehhhhcCeEEEEE
Confidence            999754211   12479999999995 4899999999999877778999887654321   2469999999999999999


Q ss_pred             CCCCEEEEEc------CCCCCcc
Q 044367          432 LVSKQLYFQR------IDCELLA  448 (450)
Q Consensus       432 ~~~~~iGfa~------~~c~~~~  448 (450)
                      ++++|||||+      ..|++++
T Consensus       388 ~~~~riGfa~~~~~~~~~c~~~~  410 (413)
T 3vla_A          388 LATSRVGFSGTLLGSRTTCANFN  410 (413)
T ss_dssp             TTTTEEEEEEEGGGGTCCGGGSB
T ss_pred             CCCCEEEEEEecccCcccccCcC
Confidence            9999999998      4576653
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A* Back     alignment and structure
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 450
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 3e-37
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 2e-26
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 2e-25
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 1e-24
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 3e-24
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 1e-23
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 3e-23
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 4e-23
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 1e-22
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 1e-22
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 2e-22
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 3e-22
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 4e-22
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 5e-22
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 6e-21
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 8e-21
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 2e-20
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 2e-20
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 1e-19
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 1e-18
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 2e-18
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 7e-14
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  137 bits (346), Expect = 3e-37
 Identities = 60/369 (16%), Positives = 114/369 (30%), Gaps = 39/369 (10%)

Query: 99  FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGA---TTFDPSKSLTYATLPCDSSY 155
           + + F  G        VLD    L+W  C   +       ++     +  Y    C +  
Sbjct: 16  YTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGCPAPS 70

Query: 156 CTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKT---FLYDVGFGCSHNNA 212
           C +D    P    Y     +G  + G++   +F   T+D  K        V   C+ +  
Sbjct: 71  CGSDKHDKPC-TAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKL 129

Query: 213 -HFSDEQFTGVFGLGPATSSTHSLVEKVGSKFSYCIGNLNYFEYAYNMLILGEGAILEGD 271
                   TGV GL  +  +  + V     K +               +  G        
Sbjct: 130 LASLPRGSTGVAGLANSGLALPAQVASAQ-KVANRFLLCLPTGGPGVAIFGGGPVPWPQF 188

Query: 272 S-----TPMSVIDGS--YYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTLTW 324
           +     TP+    GS  +Y++   I +G+  + +           +  GV + +      
Sbjct: 189 TQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPE------GALATGGVMLSTRLPYVL 242

Query: 325 LVPSAYQTLRKEVEDLFQG-------LLPSYPMDPAWHLCYSG---NINRDLQGFPAMAF 374
           L P  Y+ L                 +  +      + +CY       N      P +  
Sbjct: 243 LRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQL 302

Query: 375 HFAGGADLVLDAESVFYQESSSVFCLAVGPSDIN--GERFKDLSIIGMIAQQNYNVAYDL 432
              GG+D  +  ++          C+A         G+      I+G    +++ + +D+
Sbjct: 303 GLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDM 362

Query: 433 VSKQLYFQR 441
             K+L F R
Sbjct: 363 EKKRLGFSR 371
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query450
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure