Citrus Sinensis ID: 044388

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------
MGTELMRVCIKEENDEVPSVPPGFESFASFTLKRVQDTEKHDCDITSCSASASASESLSVHMETEVKVADAAKAARPLRRRPGINYGLLDHSSEDESDSGKLGQNFTARPCLPKGVIRGCPTCSDCQKVTARWRPEDSCRPDLEDAPVFYPTEEEFQDTLKYIASIRPKAEPYGICRIVPPSSWKPPCPLKEKPIWDSSTFVTRVQRVDKLQNRNSMRKVSRIHNHSRRKRRRSTRMAVDCGSDSGNVSASGDVGCYEDERFGFEPGPAFTLNTFQKYADLFKAQYFSRDKNDAKGLGANTAVLEEHWEPLVENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNNFPRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKTSISHDKLLLGAAREAVRAHWELNLLKKNTSDNLRWKDFCGKDGILAKALKKRVDMERARREFLSSSSQTMKMESNFDATSERECSVCLFDLHLSAVGCHCSSDRYACLIHAKNFCSCAWGSKFFLYRYDTSELNILVEALEGKLSAVYRWARLDLGLALSSFISRDNMDFDKLSHSMDGPVLKM
ccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHccccccccEEEcccccccccccccccccccccccccccHHHHHHHHHccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccEEEEcccccccccEEEcccccEEEEccHHHHHHHHHHHHHHHHHHHcccHHHHccccEEEcHHHHHHccccEEEEEcccccEEEEcccccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHccccccccEEEEEEEccccccccccccHHHHcccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcccccccccc
cccEEEEEEEcccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHccEEEEEccccccccccEEEccHccccccccHHHHHHHHHccccccccccccccHccccccccccccccccccccccccHHHHcccHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHccccccEEEEEccccccccccccccccccccccccccHHccccccccccccccccHHEEEcccccccEEcEEEEEEEEcHEEEEcccccEEEEEHHccccccEEcccccHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHccHHHHHHccccEEEEEccccEEEEEcccHHHccccccccHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccHHHHHHccEEEEEEEEcccccccEEEEHcHHHHccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHccccccccEEEc
MGTELMRVCIKeendevpsvppgfesFASFTLKrvqdtekhdcditscsasasasesLSVHMETEVKVADAAKaarplrrrpginyglldhssedesdsgklgqnftarpclpkgvirgcptcsdcqkvtarwrpedscrpdledapvfypteeEFQDTLKYIASIrpkaepygicrivppsswkppcplkekpiwdsstfVTRVQRVDKlqnrnsmrkvsrihnhsrrkrrrstrmavdcgsdsgnvsasgdvgcyederfgfepgpaftlnTFQKYADLFKAQyfsrdkndakglgantavleehweplvENIEGEYWRIVEKATEEIEVLYGadletcvfgsgfpktlnqvgsasderyiksgwnlnnfprlpgsvlsyesgdisgvLVPWLYIGMCFssfcwhvedhhlyslnymhwgapkmwygvpgkdALKLEEAMRKHLHDLFEEQPDLLHKLVTQLspsilkseglpvyrcVQNAgefvltfprayhsgfncgfncaeavnvapvdwlphGQIAIELYREQGRKTSISHDKLLLGAAREAVRAHWELNLLkkntsdnlrwkdfcgkDGILAKALKKRVDMERARREFLSSSSQTMKmesnfdatserecsVCLFdlhlsavgchcssdrYACLIHAknfcscawgskfflyrydtSELNILVEALEGKLSAVYRWARLDLGLALSSfisrdnmdfdklshsmdgpvlkm
MGTELMRVCIKeendevpsvppgFESFASFTLKRVQDTEKHDCDITSCSASASASESLSVHMETEVKVAdaakaarplrrrpginygLLDHSSEDESDSGKLGQNFTARPCLPKGVIRGCPTCSDCQKVTarwrpedscrpdledapvfyPTEEEFQDTLKYIASIRPKAEPYGICrivppsswkppcplkekpiwdsstfvtrvqrvdklqnrnsmrkvsrihnhsrrkrrrstrmavdcgsdsgnvsasgDVGCYEDERFGFEPGPAFTLNTFQKYADLFKAQYFSRDKNDAKGLGANTAVLEEHWEPLVENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNNFPRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKTSISHDKLLLGAAREAVRAHWELNllkkntsdnlrwkdfCGKDGILAKALKKRVDMERARreflssssqtmkMESNFDATSERECSVCLFDLHLSAVGCHCSSDRYACLIHAKNFCSCAWGSKFFLYRYDTSELNILVEALEGKLSAVYRWARLDLGLALSSfisrdnmdfdklshsmdgpvlkm
MGTELMRVCIKEENDEVPSVPPGFESFASFTLKRVQDTEKHDCDITscsasasaseslsVHMETEVKVadaakaarplrrrPGINYGLLDHssedesdsGKLGQNFTARPCLPKGVIRGCPTCSDCQKVTARWRPEDSCRPDLEDAPVFYPTEEEFQDTLKYIASIRPKAEPYGICRIVPPSSWKPPCPLKEKPIWDSSTFVTRVQRVDKLQNRNSMRKVsrihnhsrrkrrrstrMAVDCGSDSGNVSASGDVGCYEDERFGFEPGPAFTLNTFQKYADLFKAQYFSRDKNDAKGLGANTAVLEEHWEPLVENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNNFPRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKTSISHDKLLLGAAREAVRAHWELNLLKKNTSDNLRWKDFCGKDGILAKALKKRVDMERARREFLSSSSQTMKMESNFDATSERECSVCLFDLHLSAVGCHCSSDRYACLIHAKNFCSCAWGSKFFLYRYDTSELNILVEALEGKLSAVYRWARLDLGLALSSFISRDNMDFDKLSHSMDGPVLKM
*********************************************************************************************************FTARPCLPKGVIRGCPTCSDCQKVTARWRPEDSCRPDLEDAPVFYPTEEEFQDTLKYIASIRPKAEPYGICRIVPPSSWKPPCPLKEKPIWDSSTFVTRVQ**********************************************DVGCYEDERFGFEPGPAFTLNTFQKYADLFKAQYFSRDKNDAKGLGANTAVLEEHWEPLVENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNNFPRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKTSISHDKLLLGAAREAVRAHWELNLLKKNTSDNLRWKDFCGKDGILAKALK********************************ECSVCLFDLHLSAVGCHCSSDRYACLIHAKNFCSCAWGSKFFLYRYDTSELNILVEALEGKLSAVYRWARLDLGLALSSFISR*******************
********************************************************************************************************************************************PDLEDAPVFYPTEEEFQDTLKYIASIRPKAEPYGICRIVPPSSWKPPCPLKEKPIWDSSTFVTRVQRVDKLQNRNSMRKVSRIHNHSRRKRRRSTRMAVDCGSDSGNVSASGDVGCYEDE******************ADLFKAQYFSRDKNDAKGLGANTAVLEEHWEPLVENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGF*************RYIKSGWNLNNFPRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKTSISHDKLLLGAAREAVRAHWELNLLKKN**********CGKDGILA*****************************FDATSERECSVCLFDLHLSAVGCHCSSDRYACLIHAKNFCSCAWGSKFFLYRYDTSELNILVEALEGKLSAVYRWA**************************D*P*LK*
MGTELMRVCIKEENDEVPSVPPGFESFASFTLKRVQDTEKHDCDITSC**************ETEVKVADAAKAARPLRRRPGINYGLLDHS*********LGQNFTARPCLPKGVIRGCPTCSDCQKVTARWRPEDSCRPDLEDAPVFYPTEEEFQDTLKYIASIRPKAEPYGICRIVPPSSWKPPCPLKEKPIWDSSTFVTRVQRVDKLQNRNSMR***********************GSDSGNVSASGDVGCYEDERFGFEPGPAFTLNTFQKYADLFKAQYFSRDKNDAKGLGANTAVLEEHWEPLVENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNNFPRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKTSISHDKLLLGAAREAVRAHWELNLLKKNTSDNLRWKDFCGKDGILAKALKKRVDMERARREFLSSSSQT***********ERECSVCLFDLHLSAVGCHCSSDRYACLIHAKNFCSCAWGSKFFLYRYDTSELNILVEALEGKLSAVYRWARLDLGLALSSFISRDNMDFDKLSHSMDGPVLKM
*GTELMRVCIKEENDEVPSVPPGFESFASFTLKR*******************************************************************************************************SCRPDLEDAPVFYPTEEEFQDTLKYIASIRPKAEPYGICRIVPPSSWKPPCPLKEKPIWDSSTFVTRVQRVDKLQNR********************************NVSASGDVGCYEDERFGFEPGPAFTLNTFQKYADLFKAQYFSRDKN****LGANTAVLEEHWEPLVENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNNFPRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKTSISHDKLLLGAAREAVRAHWELNLLKKNTSDNLRWKDFCGKDGILAKALKKRVDMERARREFLSSSSQTMKMESNFDATSERECSVCLFDLHLSAVGCHCSSDRYACLIHAKNFCSCAWGSKFFLYRYDTSELNILVEALEGKLSAVYRWARLDLGLALS*******MDFDKLSHSMDGPVLKM
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MGTELMRVCIKEENDEVPSVPPGFESFASFTLKRVQDTEKHDCDITSCSASASASESLSVHMETEVKVADAAKAARPLRRRPGINYGLLDHSSEDESDSGKLGQNFTARPCLPKGVIRGCPTCSDCQKVTARWRPEDSCRPDLEDAPVFYPTEEEFQDTLKYIASIRPKAEPYGICRIVPPSSWKPPCPLKEKPIWDSSTFVTRVQRVDKLQNRNSMRKVSRIHNHSRRKRRRSTRMAVDCGSDSGNVSASGDVGCYEDERFGFEPGPAFTLNTFQKYADLFKAQYFSRDKNDAKGLGANTAVLEEHWEPLVENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNNFPRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKTSISHDKLLLGAAREAVRAHWELNLLKKNTSDNLRWKDFCGKDGILAKALKKRVDMERARREFLSSSSQTMKMESNFDATSERECSVCLFDLHLSAVGCHCSSDRYACLIHAKNFCSCAWGSKFFLYRYDTSELNILVEALEGKLSAVYRWARLDLGLALSSFISRDNMDFDKLSHSMDGPVLKM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query717 2.2.26 [Sep-21-2011]
Q8GUI6 954 Probable lysine-specific no no 0.762 0.573 0.574 0.0
Q3UXZ9 1690 Lysine-specific demethyla yes no 0.543 0.230 0.419 1e-88
Q5F3R2 1522 Lysine-specific demethyla yes no 0.555 0.261 0.414 6e-88
Q80Y84 1544 Lysine-specific demethyla no no 0.556 0.258 0.409 1e-87
Q9UGL1 1544 Lysine-specific demethyla yes no 0.556 0.258 0.409 1e-87
P29375 1690 Lysine-specific demethyla no no 0.543 0.230 0.421 5e-87
Q6IQX0 1503 Lysine-specific demethyla no no 0.543 0.259 0.400 6e-86
Q30DN6 1545 Lysine-specific demethyla no no 0.543 0.252 0.419 2e-85
Q9VMJ7 1838 Lysine-specific demethyla yes no 0.542 0.211 0.402 5e-85
Q38JA7 1556 Lysine-specific demethyla no no 0.543 0.250 0.421 2e-84
>sp|Q8GUI6|JMJ14_ARATH Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 PE=1 SV=1 Back     alignment and function desciption
 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/559 (57%), Positives = 396/559 (70%), Gaps = 12/559 (2%)

Query: 128 KVTARWRPEDSCRPDLEDAPVFYPTEEEFQDTLKYIASIRPKAEPYGICRIVPPSSWKPP 187
           K+TARW P ++CRP ++DAP+FYPT E+F D L YI  +R KAE YGICRIVPP +W+PP
Sbjct: 38  KITARWNPSEACRPLVDDAPIFYPTNEDFDDPLGYIEKLRSKAESYGICRIVPPVAWRPP 97

Query: 188 CPLKEKPIWDSSTFVTRVQRVDKLQNRNSMRKVSRIHNHSRRKRRRS--TRMAVDCGSDS 245
           CPLKEK IW++S F TR+Q +D LQNR  ++K ++     RR+  +   TR   D G D+
Sbjct: 98  CPLKEKKIWENSKFPTRIQFIDLLQNREPIKKSTKTKKRKRRRISKIGYTRRKRDSGCDT 157

Query: 246 GNVSASGDVGCYEDERFGFEPGPAFTLNTFQKYADLFKAQYFSRDKNDAKGLGANTAVLE 305
            +  +S   G     +FGF+ GP FTL  FQKY + FK  YF  + +       N     
Sbjct: 158 ASSGSSDSEG-----KFGFQTGPDFTLEEFQKYDEYFKECYFQSEDHPGSKASEN----- 207

Query: 306 EHWEPLVENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKS 365
           + ++P V+++EGEYWRIVE+AT+E+EV YGADLET  FGSGFPK       +  ++Y + 
Sbjct: 208 KKFKPKVKDLEGEYWRIVEQATDEVEVYYGADLETKKFGSGFPKYKPGYPISEADQYSQC 267

Query: 366 GWNLNNFPRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPK 425
           GWNLNN  RLPGSVL++ES DISGV+VPWLY+GMCFS+FCWHVEDHHLYS+NY+H G PK
Sbjct: 268 GWNLNNLSRLPGSVLAFESCDISGVIVPWLYVGMCFSTFCWHVEDHHLYSMNYLHTGDPK 327

Query: 426 MWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGE 485
           +WYG+PG  A   E  M+K L DLFEEQPDLLH+LVTQLSP ILK EG+PVYR VQ +GE
Sbjct: 328 VWYGIPGNHAESFENVMKKRLPDLFEEQPDLLHQLVTQLSPRILKEEGVPVYRAVQRSGE 387

Query: 486 FVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKTSISHDKLLLGAA 545
           F+LTFP+AYHSGFNCGFNCAEAVNVAPVDWL HGQ A+E Y +Q RK+S+SHDKLLLGAA
Sbjct: 388 FILTFPKAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVEGYSKQRRKSSLSHDKLLLGAA 447

Query: 546 REAVRAHWELNLLKKNTSDNLRWKDFCGKDGILAKALKKRVDMERARREFLSSSSQTMKM 605
            EA    WEL+L KK T    RWK  C +DG+L KA+KKRV ME  R   L       KM
Sbjct: 448 MEATYCLWELSLSKKKTPVIARWKRVCSEDGLLTKAVKKRVQMEEERLNHLQDGFSLRKM 507

Query: 606 ESNFDATSERECSVCLFDLHLSAVGCHCSSDRYACLIHAKNFCSCAWGSKFFLYRYDTSE 665
           E +FD   EREC +C +DLH+SA  C CS +R+ACLIHAK+ CSC    ++ L R+   E
Sbjct: 508 EGDFDNKRERECFLCFYDLHMSASSCKCSPNRFACLIHAKDLCSCESKDRYILIRHTLDE 567

Query: 666 LNILVEALEGKLSAVYRWA 684
           L  LV ALEG L A+  WA
Sbjct: 568 LWALVRALEGDLDAIDLWA 586
Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3 with a higher activity for H3K4me3 and H3K4me2 than H3K4me1. No activity on H3K9me3/2, H3K36me3/2 and H3K27me3/2. Represses FT and TSF expression to inhibit the floral transition. Binds around the transcription start site of the FT locus. Involved in the DRM2-mediated maintenance of DNA methylation, but not required for the de novo DNA methylation. Required for demethylating histone H3K4me3 at the target of RNA silencing.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2 Back     alignment and function description
>sp|Q5F3R2|KDM5B_CHICK Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1 Back     alignment and function description
>sp|Q80Y84|KDM5B_MOUSE Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1 Back     alignment and function description
>sp|Q9UGL1|KDM5B_HUMAN Lysine-specific demethylase 5B OS=Homo sapiens GN=KDM5B PE=1 SV=3 Back     alignment and function description
>sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3 Back     alignment and function description
>sp|Q6IQX0|KD5BB_DANRE Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2 Back     alignment and function description
>sp|Q30DN6|KDM5D_CANFA Lysine-specific demethylase 5D OS=Canis familiaris GN=KDM5D PE=2 SV=1 Back     alignment and function description
>sp|Q9VMJ7|KDM5_DROME Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid PE=1 SV=1 Back     alignment and function description
>sp|Q38JA7|KDM5C_CANFA Lysine-specific demethylase 5C OS=Canis familiaris GN=KDM5C PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query717
255561935 1202 transcription factor, putative [Ricinus 0.977 0.583 0.791 0.0
356574834 1257 PREDICTED: probable lysine-specific deme 0.963 0.549 0.757 0.0
359488087 1271 PREDICTED: probable lysine-specific deme 0.986 0.556 0.752 0.0
356533690 1257 PREDICTED: probable lysine-specific deme 0.963 0.549 0.753 0.0
302143629 1178 unnamed protein product [Vitis vinifera] 0.940 0.572 0.743 0.0
449470236 1235 PREDICTED: probable lysine-specific deme 0.988 0.574 0.710 0.0
224125702 923 jumonji domain protein [Populus trichoca 0.810 0.629 0.800 0.0
9802555 1239 F22O13.10 [Arabidopsis thaliana] 0.979 0.566 0.672 0.0
240254045 1209 transcription factor jumonji and C5HC2 t 0.979 0.580 0.672 0.0
297843650 1209 transcription factor jumonji family prot 0.980 0.581 0.671 0.0
>gi|255561935|ref|XP_002521976.1| transcription factor, putative [Ricinus communis] gi|223538780|gb|EEF40380.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1125 bits (2910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/705 (79%), Positives = 615/705 (87%), Gaps = 4/705 (0%)

Query: 6   MRVCIKEENDEVPSVPPGFESFASFTLKRVQDTEKHDC-DITSCSASASASESLSVHMET 64
           MRVCIKEE+DE+PSVPPGFESFA+FTLKRVQD+E H+  +I   S+S+SASES  V ME 
Sbjct: 1   MRVCIKEESDEIPSVPPGFESFAAFTLKRVQDSENHESQNIVRFSSSSSASESQPVKMEM 60

Query: 65  EVKVADAAKAARPLRRRPGINYGLLDHSSEDESDSGKLGQNFTARPCLPKGVIRGCPTCS 124
           E  +    KA R LRRR  INYG L++ S DESDSGKL Q+ T R  LPKGVIRGC  C 
Sbjct: 61  ESDIGTVTKATRSLRRRAWINYGQLENCSGDESDSGKLNQDLTLRSHLPKGVIRGCAQCM 120

Query: 125 DCQKVTARWRPEDSCRPDLEDAPVFYPTEEEFQDTLKYIASIRPKAEPYGICRIVPPSSW 184
           +CQKVTARW PE + +PDLE+APVFYPTEEEF+DT+KYIASIR KAEPYGICRIVPP SW
Sbjct: 121 NCQKVTARWHPEYARKPDLEEAPVFYPTEEEFEDTIKYIASIRLKAEPYGICRIVPPPSW 180

Query: 185 KPPCPLKEKPIWDSSTFVTRVQRVDKLQNRNSMRKVSRIHNHSRRKRRRSTRMAVDCGSD 244
           KPPCPLKEK IW+ S F TRVQRVDKLQNR+SM+K+SR++NH+++KRRR  RMAVDCG+D
Sbjct: 181 KPPCPLKEKSIWEGSKFATRVQRVDKLQNRDSMKKMSRMNNHTKKKRRRCMRMAVDCGTD 240

Query: 245 SGNVSASGDVGCYEDERFGFEPGPAFTLNTFQKYADLFKAQYFSRDKNDA-KGLGANTAV 303
            G++S   DVG  E E FGFEPGP F+LNTFQKYAD FKAQYF+  KND+      NTA 
Sbjct: 241 IGSISGCIDVGACEAESFGFEPGPQFSLNTFQKYADDFKAQYFT--KNDSITSKAVNTAF 298

Query: 304 LEEHWEPLVENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYI 363
           L+E+WEP VENIEGEYWRIVEKATEEIEVLYGADLET VFGSGFPKT  QVGS ++ERY 
Sbjct: 299 LQENWEPTVENIEGEYWRIVEKATEEIEVLYGADLETGVFGSGFPKTSGQVGSDTNERYA 358

Query: 364 KSGWNLNNFPRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGA 423
           KSGWNLNNFPRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGA
Sbjct: 359 KSGWNLNNFPRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGA 418

Query: 424 PKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNA 483
           PK+WYGVPGKDA+KLE+AMRKHL DLFEEQPDLLHKLVTQLSPSILKSEG+PVYRC QN 
Sbjct: 419 PKIWYGVPGKDAVKLEQAMRKHLPDLFEEQPDLLHKLVTQLSPSILKSEGVPVYRCKQNT 478

Query: 484 GEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKTSISHDKLLLG 543
           GEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGR+TSISHDKLLLG
Sbjct: 479 GEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRRTSISHDKLLLG 538

Query: 544 AAREAVRAHWELNLLKKNTSDNLRWKDFCGKDGILAKALKKRVDMERARREFLSSSSQTM 603
           A+REAVRAHWELNLLKKNTS+NLRWKD CGKDGIL+KALK+RV++ER RREFL  SSQ +
Sbjct: 539 ASREAVRAHWELNLLKKNTSNNLRWKDVCGKDGILSKALKERVEIERVRREFLCKSSQAL 598

Query: 604 KMESNFDATSERECSVCLFDLHLSAVGCHCSSDRYACLIHAKNFCSCAWGSKFFLYRYDT 663
           KMESNFDATSEREC  CLFDLHLSA GC CS D+YACL HA + CSC   +KFFL+RYD 
Sbjct: 599 KMESNFDATSERECIFCLFDLHLSAAGCRCSPDKYACLNHANHMCSCGGSTKFFLFRYDI 658

Query: 664 SELNILVEALEGKLSAVYRWARLDLGLALSSFISRDNMDFDKLSH 708
           SELNILVEALEGKLSAVYRWARLDLGLAL+S+IS+DNM   KLS+
Sbjct: 659 SELNILVEALEGKLSAVYRWARLDLGLALTSYISKDNMQDCKLSY 703

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356574834|ref|XP_003555549.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] Back     alignment and taxonomy information
>gi|359488087|ref|XP_002266063.2| PREDICTED: probable lysine-specific demethylase JMJ14-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356533690|ref|XP_003535393.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] Back     alignment and taxonomy information
>gi|302143629|emb|CBI22382.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449470236|ref|XP_004152824.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Cucumis sativus] gi|449520389|ref|XP_004167216.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224125702|ref|XP_002319654.1| jumonji domain protein [Populus trichocarpa] gi|222858030|gb|EEE95577.1| jumonji domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|9802555|gb|AAF99757.1|AC003981_7 F22O13.10 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|240254045|ref|NP_172338.4| transcription factor jumonji and C5HC2 type zinc finger domain-containing protein [Arabidopsis thaliana] gi|334182398|ref|NP_001184940.1| transcription factor jumonji and C5HC2 type zinc finger domain-containing protein [Arabidopsis thaliana] gi|225897896|dbj|BAH30280.1| hypothetical protein [Arabidopsis thaliana] gi|332190197|gb|AEE28318.1| transcription factor jumonji and C5HC2 type zinc finger domain-containing protein [Arabidopsis thaliana] gi|332190198|gb|AEE28319.1| transcription factor jumonji and C5HC2 type zinc finger domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297843650|ref|XP_002889706.1| transcription factor jumonji family protein [Arabidopsis lyrata subsp. lyrata] gi|297335548|gb|EFH65965.1| transcription factor jumonji family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query717
TAIR|locus:2025635 1209 PKDM7D [Arabidopsis thaliana ( 0.972 0.576 0.649 5.2e-255
TAIR|locus:2196979 819 JMJ18 "Jumonji domain-containi 0.785 0.687 0.579 4.6e-176
TAIR|locus:2128659 954 JMJ14 "JUMONJI 14" [Arabidopsi 0.762 0.573 0.572 1.4e-174
TAIR|locus:2044697 806 MEE27 "maternal effect embryo 0.744 0.662 0.560 8.1e-163
TAIR|locus:2064910708 AT2G38950 [Arabidopsis thalian 0.602 0.610 0.466 6.4e-136
ZFIN|ZDB-GENE-030131-5379 1483 kdm5ba "lysine (K)-specific de 0.387 0.187 0.506 2e-95
UNIPROTKB|Q5F3R2 1522 KDM5B "Lysine-specific demethy 0.380 0.179 0.512 2.2e-94
MGI|MGI:1922855 1544 Kdm5b "lysine (K)-specific dem 0.380 0.176 0.508 5.4e-94
UNIPROTKB|Q9UGL1 1544 KDM5B "Lysine-specific demethy 0.380 0.176 0.508 5.4e-94
RGD|1565602 1546 Kdm5b "lysine (K)-specific dem 0.380 0.176 0.508 5.4e-94
TAIR|locus:2025635 PKDM7D [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2455 (869.3 bits), Expect = 5.2e-255, P = 5.2e-255
 Identities = 463/713 (64%), Positives = 535/713 (75%)

Query:     1 MGTELMRVCIKEENDEVPSVPPGFESFASFTLKRVQDTEKHDCDITXXXXXXXXXXXXXV 60
             MGTELMR+C+KE++D++PSVPPGFES+A+FTLKRV      D   T             +
Sbjct:     1 MGTELMRICVKEDSDDLPSVPPGFESYATFTLKRVVPATTSDKAKTPAIESVSATEQAKM 60

Query:    61 HMETEVKVXXXXXXXXXXXXXPGINYGLLDHXXXXXXXXGKLG-----QNFTARPCLPKG 115
              +E++                P IN+   D                  QN   +P LPKG
Sbjct:    61 EVESD-----EAKAARALRRRPWINHSGCDDDGDCAANNDNAASQNPDQNCDVKPALPKG 115

Query:   116 VIRGCPTCSDCQKVTARWRPEDSCRPDLEDAPVFYPTEEEFQDTLKYIASIRPKAEPYGI 175
             V+RGC  C DCQKVTARW P+++ RPDLEDAPVFYP+EEEF+DTL YIA IRP+AE YGI
Sbjct:   116 VVRGCEECKDCQKVTARWHPDEARRPDLEDAPVFYPSEEEFEDTLNYIAKIRPEAEKYGI 175

Query:   176 CRIVPPSSWKPPCPLKEKPIWDSSTFVTRVQRVDKLQNRNSMRKVXXXXXXXXXXXXXXX 235
             CRIVPP SWKPPCPLKEK +W+ S F TRVQRVDKLQNR+SM+K+               
Sbjct:   176 CRIVPPPSWKPPCPLKEKQVWEGSKFTTRVQRVDKLQNRSSMKKISKLPNQMRKKKRKCM 235

Query:   236 XMAVDCGSDSGNVSASGDVGCYEDERFGFEPGPAFTLNTFQKYADLFKAQYFSRDKN--D 293
              M +D  ++      S   G  E E FGFEPGP FTL  FQKYAD FKAQYF + +   D
Sbjct:   236 KMGMDSVTNGMGDPCSASTGMNELETFGFEPGPGFTLKDFQKYADEFKAQYFKKSETSTD 295

Query:   294 AKGLGANTAVLEEHWEPLVENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPK-TLN 352
              K    N+    + WEP +E++EGEYWRIV+KATEEIEVLYGADLET VFGSGFPK + +
Sbjct:   296 DKCKVDNSI---DCWEPALEDVEGEYWRIVDKATEEIEVLYGADLETGVFGSGFPKISSS 352

Query:   353 QVGSASDERYIKSGWNLNNFPRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHH 412
                S+S+++Y KSGWNLNNFPRLPGS+L YE  DISGVLVPWLYIGMCFSSFCWHVEDHH
Sbjct:   353 HNASSSEDKYAKSGWNLNNFPRLPGSLLKYEGSDISGVLVPWLYIGMCFSSFCWHVEDHH 412

Query:   413 LYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSE 472
             LYSLNYMHWGAPK+WYGV GKDA+KLEEAMRKHL DLFEEQPDLLHKLVTQLSPS LK+ 
Sbjct:   413 LYSLNYMHWGAPKLWYGVGGKDAVKLEEAMRKHLPDLFEEQPDLLHKLVTQLSPSKLKTA 472

Query:   473 GLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRK 532
             G+PV+RCVQ+AGEFVLTFPRAYH+GFN GFNCAEAVNVAPVDWLPHGQIAIELY +QGRK
Sbjct:   473 GVPVHRCVQHAGEFVLTFPRAYHAGFNSGFNCAEAVNVAPVDWLPHGQIAIELYCQQGRK 532

Query:   533 TSISHDKLLLGAAREAVRAHWELNLLKKNTSDNLRWKDFCGKDGILAKALKKRVDMERAR 592
             TSISHDKLLLGAARE V+A WELNLL+KNT DNLRWK F  KDGILAK LK R+DMER R
Sbjct:   533 TSISHDKLLLGAAREVVKADWELNLLRKNTVDNLRWKAFSAKDGILAKTLKARIDMERTR 592

Query:   593 REFLSSSSQTMKMESNFDATSERECSVCLFDLHLSAVGCHCSSDRYACLIHAKNFCSCAW 652
             REFL +SS  +KM SNFDAT+EREC +C FDLHLSA GC CS ++Y+CL H K  CSC W
Sbjct:   593 REFLCNSSLALKMHSNFDATNERECCICFFDLHLSAAGCRCSPEKYSCLTHVKELCSCPW 652

Query:   653 GSKFFLYRYDTSELNILVEALEGKLSAVYRWARLDLGLALSSFISRDNMDFDK 705
              +K+FL+RYD  ELN+LVEA+EGKLS+VYRWAR DLGLALS+ +S   M+ D+
Sbjct:   653 VTKYFLFRYDIDELNVLVEAVEGKLSSVYRWARQDLGLALSTDVSGSKMEIDE 705
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS
GO:0006486 "protein glycosylation" evidence=RCA
GO:0009630 "gravitropism" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0016926 "protein desumoylation" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
TAIR|locus:2196979 JMJ18 "Jumonji domain-containing protein 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128659 JMJ14 "JUMONJI 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044697 MEE27 "maternal effect embryo arrest 27" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064910 AT2G38950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5379 kdm5ba "lysine (K)-specific demethylase 5Ba" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F3R2 KDM5B "Lysine-specific demethylase 5B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1922855 Kdm5b "lysine (K)-specific demethylase 5B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UGL1 KDM5B "Lysine-specific demethylase 5B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1565602 Kdm5b "lysine (K)-specific demethylase 5B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
JMJ907
jumonji domain protein (923 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.170.78.1
hypothetical protein (548 aa)
      • 0.700

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query717
pfam02373114 pfam02373, JmjC, JmjC domain, hydroxylase 2e-53
smart0054542 smart00545, JmjN, Small domain found in the jumonj 3e-20
pfam0292854 pfam02928, zf-C5HC2, C5HC2 zinc finger 2e-17
pfam0237534 pfam02375, JmjN, jmjN domain 3e-17
smart0055858 smart00558, JmjC, A domain family that is part of 1e-14
>gnl|CDD|202224 pfam02373, JmjC, JmjC domain, hydroxylase Back     alignment and domain information 
 Score =  179 bits (455), Expect = 2e-53
 Identities = 64/117 (54%), Positives = 77/117 (65%), Gaps = 3/117 (2%)

Query: 394 WLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQ 453
           WLY+GM  S+  WH+ED  LYS+NY+H+G PK+WY +P + A K E+ + KH      EQ
Sbjct: 1   WLYMGMPGSTTPWHIEDQGLYSINYLHFGGPKVWYIIPSEYAEKFEKVLSKHN---GGEQ 57

Query: 454 PDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNV 510
           PDLL  L T +SP  L   G+PVYR VQ  GEFV TFP  YH  FN GFN AEAVN 
Sbjct: 58  PDLLLHLNTIISPKQLLENGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF 114

The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalyzing hydroxylation. Length = 114
>gnl|CDD|128818 smart00545, JmjN, Small domain found in the jumonji family of transcription factors Back     alignment and domain information
>gnl|CDD|217292 pfam02928, zf-C5HC2, C5HC2 zinc finger Back     alignment and domain information
>gnl|CDD|190295 pfam02375, JmjN, jmjN domain Back     alignment and domain information
>gnl|CDD|214721 smart00558, JmjC, A domain family that is part of the cupin metalloenzyme superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 717
KOG0958 690 consensus DNA damage-responsive repressor GIS1/RPH 100.0
KOG1246 904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 100.0
PF02373114 JmjC: JmjC domain, hydroxylase; InterPro: IPR01312 100.0
smart0054542 JmjN Small domain found in the jumonji family of t 99.78
PF0237534 JmjN: jmjN domain; InterPro: IPR003349 Jumonji pro 99.62
PF0292854 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Z 99.54
smart0055857 JmjC A domain family that is part of the cupin met 99.33
KOG1246904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 98.51
PF13621251 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU 96.78
KOG2131427 consensus Uncharacterized conserved protein, conta 96.54
KOG2130407 consensus Phosphatidylserine-specific receptor Ptd 94.67
KOG1356889 consensus Putative transcription factor 5qNCA, con 94.01
PF08007319 Cupin_4: Cupin superfamily protein; InterPro: IPR0 86.13
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=6.5e-77  Score=662.69  Aligned_cols=311  Identities=34%  Similarity=0.663  Sum_probs=268.8

Q ss_pred             CCCCCCccCCCHHhhhCHHHHHHHhhccc-ccCCceeecCCCCCCCCCCCCCCCCCCCCccccccchhhccccccccccc
Q 044388          142 DLEDAPVFYPTEEEFQDTLKYIASIRPKA-EPYGICRIVPPSSWKPPCPLKEKPIWDSSTFVTRVQRVDKLQNRNSMRKV  220 (717)
Q Consensus       142 ~l~e~PvF~PT~EEF~Dp~~YI~~I~~~a-~~yGIcKIVPP~~W~pp~~l~~~~~~~~~~F~tr~Q~V~~L~~r~~~~~~  220 (717)
                      ...++||||||||||+||.+||++|+++| +++||+|||||++|+|+...++   .+++++++.+|++-..+        
T Consensus        11 ps~~I~tF~PtmeEF~dF~~yi~~IEs~G~h~aGlaKVipPkeWk~r~~~~d---i~di~I~~PiqQ~v~g~--------   79 (690)
T KOG0958|consen   11 PSDGIPTFYPTMEEFADFSAYIAYIESQGAHRAGLAKVIPPKEWKPRLMYDD---IDDIKIPAPIQQVVTGQ--------   79 (690)
T ss_pred             CCCCcceeCcCHHHHHhHHHHHHHHHhccchhcCeeeeeCCccCCcccccCc---hhheecChhHHHHhhcc--------
Confidence            36799999999999999999999999996 5599999999999999876653   34677777777764321        


Q ss_pred             cccccccccccccccccccccCCCCCCCCCCCCCCCcCCCccccccCCCCCHHHHHHHHHHHHHhhcCCCCCCccCCCCC
Q 044388          221 SRIHNHSRRKRRRSTRMAVDCGSDSGNVSASGDVGCYEDERFGFEPGPAFTLNTFQKYADLFKAQYFSRDKNDAKGLGAN  300 (717)
Q Consensus       221 ~~~~~~~k~k~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~fgf~~g~~~tl~~F~~~A~~fk~~yf~~~~~~~~~~~~~  300 (717)
                                                       .|++  ++++.+..+.|++.+|+++|+.  .+|...+.         
T Consensus        80 ---------------------------------~G~F--~~~Ni~~~kam~v~q~r~lAns--~~y~tpr~---------  113 (690)
T KOG0958|consen   80 ---------------------------------GGLF--TQYNIQDKKAMTVRQFRDLANS--DKYCTPRG---------  113 (690)
T ss_pred             ---------------------------------CceE--EEeehhhccccChhhhhhhhhh--cccCCCcc---------
Confidence                                             2454  4566676789999999999998  34443331         


Q ss_pred             cccccccCCcChhhHHHHHHHhhccCCcceeeeecCCCCCcccCCCCCCCCcCCCCCchhhhhccCCccCCCCCCCCCcC
Q 044388          301 TAVLEEHWEPLVENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNNFPRLPGSVL  380 (717)
Q Consensus       301 ~~~~~~~~~ps~~~vE~efWr~V~~~~~~v~V~YGaDl~~~~~GSgFp~~~~~~~~~~~~~y~~~~WNLnnLp~~~~SlL  380 (717)
                              .-..+|+|++||+.+...    .+.||||+.+++|..+                 ...||+++|+...+-  
T Consensus       114 --------~~d~~dle~kYWKnltf~----~PiYGaD~~gSi~~~~-----------------~~~WNi~~L~tild~--  162 (690)
T KOG0958|consen  114 --------SQDFEDLEQKYWKNLTFD----SPIYGADINGSIYDED-----------------LDEWNIARLDTILDL--  162 (690)
T ss_pred             --------cccHHHHHHHHHhcccCC----CCcccccCCCccCccc-----------------ccccccccccchhch--
Confidence                    135789999999999974    6999999997777644                 568999999974321  


Q ss_pred             cCCCCCCCCcccceEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhccchhhhhcc
Q 044388          381 SYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKL  460 (717)
Q Consensus       381 ~~~~~~I~GV~~P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~~~d~L~~~  460 (717)
                      ...+..|.||||||||+|||.++|+||+||++||||||+|||+||+||+||++|.++||+++.+.+|+....|++||+|+
T Consensus       163 ~~~~~~i~gvNt~yLyfGmwKttFaWHtEdmDLySINyLHFGaPK~WYaIP~eh~~rfekla~~~fp~~~~~C~aFLRHK  242 (690)
T KOG0958|consen  163 EECGIIIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGAPKQWYAIPPEHGDRFEKLASELFPDSSQGCPAFLRHK  242 (690)
T ss_pred             hhcceeecccCccceeeeeeecccccccCCccceeeeeeecCCCcceeecCHHHHHHHHHHHHhhCCccccCCHHHHhhc
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccChhhHHhCCCCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCccccchhHHHHHHHhcCCCCCCCHHHH
Q 044388          461 VTQLSPSILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKTSISHDKL  540 (717)
Q Consensus       461 ~~~isP~~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~Wl~~g~~a~~~y~~~~~~~~~s~d~L  540 (717)
                      +++++|.+|+++|||+++++|++||||||||++||+|||+||||+|++|||+++|++||+.|..+-+. ....-|||+.+
T Consensus       243 ~~LiSP~~LkqnGIpfn~ivqeagEFmITFPygyHaGFN~GfN~aES~nFat~Rwi~YgK~a~~C~C~-~d~vkism~~f  321 (690)
T KOG0958|consen  243 MTLISPSVLKQNGIPFNRIVQEAGEFMITFPYGYHAGFNHGFNCAESTNFATPRWIDYGKQALLCSCR-SDSVKISMDPF  321 (690)
T ss_pred             ccccCHHHHHHcCCCcceeeecCCcEEEecCcccccccccchhhhhhhcccchhhhhhcccccccccc-cceeeeechhh
Confidence            99999999999999999999999999999999999999999999999999999999999999987663 23455677755


Q ss_pred             H
Q 044388          541 L  541 (717)
Q Consensus       541 l  541 (717)
                      .
T Consensus       322 v  322 (690)
T KOG0958|consen  322 V  322 (690)
T ss_pred             h
Confidence            4

>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [] Back     alignment and domain information
>smart00545 JmjN Small domain found in the jumonji family of transcription factors Back     alignment and domain information
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [] Back     alignment and domain information
>PF02928 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily Back     alignment and domain information
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A Back     alignment and domain information
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription] Back     alignment and domain information
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query717
3opt_A373 Crystal Structure Of The Rph1 Catalytic Core With A 1e-35
2xml_A348 Crystal Structure Of Human Jmjd2c Catalytic Domain 6e-34
3dxt_A354 Crystal Structure Of The Catalytic Core Domain Of J 5e-33
3dxu_A337 The Crystal Structure Of Core Jmjd2d Complexed With 5e-33
4hon_A330 Crystal Structure Of Human Jmjd2d/kdm4d In Complex 6e-33
4hoo_A330 Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme L 6e-33
2w2i_A358 Crystal Structure Of The Human 2-Oxoglutarate Oxyge 1e-32
2oq6_A381 Crystal Structure Of Jmjd2a Complexed With Histone 4e-32
2p5b_A352 The Complex Structure Of Jmjd2a And Trimethylated H 5e-32
2pxj_A347 The Complex Structure Of Jmjd2a And Monomethylated 5e-32
2gp3_A349 Crystal Structure Of The Catalytic Core Domain Of J 5e-32
2wwj_A348 Structure Of Jmjd2a Complexed With Inhibitor 10a Le 6e-32
>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With A-Ketoglutarate Length = 373 Back     alignment and structure 
Iteration: 1

 Score =  148 bits (374), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 174/391 (44%), Gaps = 68/391 (17%)
Query: 146 APVFYPTEEEFQDTLKYIASIRPKAEPYGICRIVPPSSWKPPCPLKEKPIWDSSTFVTRV 205
            PVF PT E+F+D   Y  +I       G+ +++PP  WK    L       S+  + ++
Sbjct: 14  VPVFKPTYEQFEDFYAYCKAINKYGMKSGVVKVIPPKEWKDKLDLPY-----SAETLQKI 68
Query: 206 QRVDKLQNRNSMRKVXXXXXXXXXXXXXXXXMAVDCGSD--------------SGNVSAS 251
           +    +Q   S  K                    D   D               G+VS S
Sbjct: 69  KIKSPIQQHISGNKGLFMVQNVEKNKTYNIIQWKDLSKDYVPPEDPKARRNSRKGSVSKS 128
Query: 252 GDVGCYEDERFGFEPGPAFTLNTFQKYADLFKAQYFSRDKNDAKGLGANTAVLEEHWEPL 311
             +     E        +F ++ F++    F+ +Y + D +D +    NT  L+      
Sbjct: 129 TKLKLKNFES-------SFNIDDFEQ----FRTEY-TIDLSDFQ----NTERLK------ 166
Query: 312 VENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNN 371
              +E  YW+ +   T     +YGAD      GS FP+ LN              WN+  
Sbjct: 167 --FLEEYYWKTLNFTTP----MYGADTP----GSIFPEGLNV-------------WNVAK 203
Query: 372 FPRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVP 431
            P    ++L +    + GV   +LY G+  +SF WH+ED  LYS+NY+H+GAPK WY +P
Sbjct: 204 LP----NILDHMETKVPGVNDSYLYAGLWKASFSWHLEDQDLYSINYIHFGAPKQWYSIP 259
Query: 432 GKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFP 491
            +D  K  + M++   +  +  P+ L   +   SP +L+  G+     V + GEF++T+P
Sbjct: 260 QEDRFKFYKFMQEQFPEEAKNCPEFLRHKMFLASPKLLQENGIRCNEIVHHEGEFMITYP 319
Query: 492 RAYHSGFNCGFNCAEAVNVAPVDWLPHGQIA 522
             YH+GFN G+N AE+VN A  +WLP G+ A
Sbjct: 320 YGYHAGFNYGYNLAESVNFALEEWLPIGKKA 350
>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain Length = 348 Back     alignment and structure
>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d Length = 354 Back     alignment and structure
>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And N- Oxalylglycine Length = 337 Back     alignment and structure
>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An H3k9me3 Peptide And 2-oxoglutarate Length = 330 Back     alignment and structure
>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme Length = 330 Back     alignment and structure
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase Loc390245 Length = 358 Back     alignment and structure
>pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3 Peptide Trimethylated At Lys9 Length = 381 Back     alignment and structure
>pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36 Peptide Length = 352 Back     alignment and structure
>pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36 Peptide Length = 347 Back     alignment and structure
>pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a Length = 349 Back     alignment and structure
>pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a Length = 348 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query717
3opt_A373 DNA damage-responsive transcriptional repressor R; 2e-90
3dxt_A354 JMJC domain-containing histone demethylation PROT; 5e-88
3avr_A531 Lysine-specific demethylase 6A; cupin superfamily, 1e-82
2ox0_A381 JMJC domain-containing histone demethylation PROT; 2e-81
4ask_A510 Lysine-specific demethylase 6B; oxidoreductase, KD 1e-79
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 2e-61
3kv5_D488 JMJC domain-containing histone demethylation prote 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Length = 373 Back     alignment and structure
 Score =  286 bits (732), Expect = 2e-90
 Identities = 95/406 (23%), Positives = 165/406 (40%), Gaps = 45/406 (11%)

Query: 138 SCRPDLEDAPVFYPTEEEFQDTLKYIASIRPKAEPYGICRIVPPSSWKPPCPLK-EKPIW 196
           +    +   PVF PT E+F+D   Y  +I       G+ +++PP  WK    L       
Sbjct: 6   APSEIVGGVPVFKPTYEQFEDFYAYCKAINKYGMKSGVVKVIPPKEWKDKLDLPYSAETL 65

Query: 197 DSSTFVTRVQRVDKLQNRNSMRKVSRIHNHSRRKRRRSTRMAVDCGSDSGNVSASGDVGC 256
                 + +Q+         M +    +      + +          D      S     
Sbjct: 66  QKIKIKSPIQQHISGNKGLFMVQNVEKNKTYNIIQWKDLSKDYVPPEDPKARRNSRKGSV 125

Query: 257 YEDERFGFEP-GPAFTLNTFQKYADLFKAQYFSRDKNDAKGLGANTAVLEEHWEPLVENI 315
            +  +   +    +F ++ F+++   +                      +      ++ +
Sbjct: 126 SKSTKLKLKNFESSFNIDDFEQFRTEYTIDLS-----------------DFQNTERLKFL 168

Query: 316 EGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNNFPRL 375
           E  YW+ +   T     +YGAD    +F  G                  + WN+   P  
Sbjct: 169 EEYYWKTLNFTT----PMYGADTPGSIFPEG-----------------LNVWNVAKLP-- 205

Query: 376 PGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDA 435
             ++L +    + GV   +LY G+  +SF WH+ED  LYS+NY+H+GAPK WY +P +D 
Sbjct: 206 --NILDHMETKVPGVNDSYLYAGLWKASFSWHLEDQDLYSINYIHFGAPKQWYSIPQEDR 263

Query: 436 LKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFPRAYH 495
            K  + M++   +  +  P+ L   +   SP +L+  G+     V + GEF++T+P  YH
Sbjct: 264 FKFYKFMQEQFPEEAKNCPEFLRHKMFLASPKLLQENGIRCNEIVHHEGEFMITYPYGYH 323

Query: 496 SGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKTSISHDKLL 541
           +GFN G+N AE+VN A  +WLP G+ A + +        I   KL 
Sbjct: 324 AGFNYGYNLAESVNFALEEWLPIGKKAGKCHCISDS-VEIDVKKLA 368
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 2w2i_A* Length = 354 Back     alignment and structure
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Length = 531 Back     alignment and structure
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Length = 381 Back     alignment and structure
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* Length = 510 Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Length = 332 Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query717
2ox0_A381 JMJC domain-containing histone demethylation PROT; 100.0
3dxt_A354 JMJC domain-containing histone demethylation PROT; 100.0
3opt_A373 DNA damage-responsive transcriptional repressor R; 100.0
3avr_A531 Lysine-specific demethylase 6A; cupin superfamily, 100.0
4ask_A510 Lysine-specific demethylase 6B; oxidoreductase, KD 100.0
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 100.0
2ypd_A392 Probable JMJC domain-containing histone demethyla 98.21
3k3o_A371 PHF8, PHD finger protein 8; histone demethylase, c 97.93
3kv4_A447 PHD finger protein 8; epigenetics, histone CODE, c 97.92
3pua_A392 GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe 97.88
3kv5_D488 JMJC domain-containing histone demethylation prote 97.84
3kv9_A397 JMJC domain-containing histone demethylation prote 97.81
2yu1_A451 JMJC domain-containing histone demethylation PROT; 97.69
3k2o_A336 Bifunctional arginine demethylase and lysyl-hydro 97.63
4gjz_A235 Lysine-specific demethylase 8; JMJC, beta barrel, 97.37
3pur_A528 Lysine-specific demethylase 7 homolog; oxidoreduct 97.23
3d8c_A349 Hypoxia-inducible factor 1 alpha inhibitor; FIH, H 96.48
3al5_A338 HTYW5, JMJC domain-containing protein C2ORF60; tRN 96.13
1vrb_A342 Putative asparaginyl hydroxylase; 2636534, structu 89.2
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Back     alignment and structure
Probab=100.00  E-value=5.9e-89  Score=735.66  Aligned_cols=321  Identities=33%  Similarity=0.617  Sum_probs=280.8

Q ss_pred             CCCCCccCCCHHhhhCHHHHHHHhhcc-cccCCceeecCCCCCCCCCCCCCCCCCCCCccccccchhhcccccccccccc
Q 044388          143 LEDAPVFYPTEEEFQDTLKYIASIRPK-AEPYGICRIVPPSSWKPPCPLKEKPIWDSSTFVTRVQRVDKLQNRNSMRKVS  221 (717)
Q Consensus       143 l~e~PvF~PT~EEF~Dp~~YI~~I~~~-a~~yGIcKIVPP~~W~pp~~l~~~~~~~~~~F~tr~Q~V~~L~~r~~~~~~~  221 (717)
                      -.++||||||+|||+||++||++|+++ |++|||||||||++|+|++.+++   .++++|++++|++...+.        
T Consensus        33 ~~~iPVF~PT~EEF~Df~~YI~kIe~~gA~~~GI~KIIPP~~W~p~~~~~~---~~~~~i~~piqQ~~~g~~--------  101 (381)
T 2ox0_A           33 SARIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDD---IDDLVIPAPIQQLVTGQS--------  101 (381)
T ss_dssp             TCCCEEECCCHHHHSCHHHHHHHHHHTTGGGGSEEEECCCTTCCSCSCSTT---CTTCEESSCEEEEEEEET--------
T ss_pred             CCCCceEcCCHHHHhCHHHHHHHHHhccccccCceeecCCccCCCccccch---hhhcccCCcceeeecCCC--------
Confidence            468999999999999999999999998 68999999999999999998764   467899999998764321        


Q ss_pred             ccccccccccccccccccccCCCCCCCCCCCCCCCcCCCccccccCCCCCHHHHHHHHHHHHHhhcCCCCCCccCCCCCc
Q 044388          222 RIHNHSRRKRRRSTRMAVDCGSDSGNVSASGDVGCYEDERFGFEPGPAFTLNTFQKYADLFKAQYFSRDKNDAKGLGANT  301 (717)
Q Consensus       222 ~~~~~~k~k~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~fgf~~g~~~tl~~F~~~A~~fk~~yf~~~~~~~~~~~~~~  301 (717)
                                                       |++  .+|+++ ++.|||.+|+++|+.++  +. .+           
T Consensus       102 ---------------------------------g~~--~~~~~~-~k~~tl~~f~~~a~~~~--~~-~p-----------  131 (381)
T 2ox0_A          102 ---------------------------------GLF--TQYNIQ-KKAMTVREFRKIANSDK--YC-TP-----------  131 (381)
T ss_dssp             ---------------------------------TEE--EEEEEE-CCCEEHHHHHHHHHSTT--TS-CC-----------
T ss_pred             ---------------------------------ccc--cccccc-ccccCHHHHHHHhcccc--cC-CC-----------
Confidence                                             222  234554 58899999999998653  11 11           


Q ss_pred             ccccccCCcChhhHHHHHHHhhccCCcceeeeecCCCCCcccCCCCCCCCcCCCCCchhhhhccCCccCCCCCCCCCcCc
Q 044388          302 AVLEEHWEPLVENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNNFPRLPGSVLS  381 (717)
Q Consensus       302 ~~~~~~~~ps~~~vE~efWr~V~~~~~~v~V~YGaDl~~~~~GSgFp~~~~~~~~~~~~~y~~~~WNLnnLp~~~~SlL~  381 (717)
                            ...+.++||++|||+|+.    ++|+||+||++++|+++                 .++|||+|||.+.++||+
T Consensus       132 ------~~~~~~~lE~~fWr~v~~----~~~~YgaD~~gS~f~~~-----------------~~~WNL~~Lp~ll~~ll~  184 (381)
T 2ox0_A          132 ------RYSEFEELERKYWKNLTF----NPPIYGADVNGTLYEKH-----------------VDEWNIGRLRTILDLVEK  184 (381)
T ss_dssp             ------CCSSHHHHHHHHHHHTTS----SCCEEEEEEECCCSCTT-----------------CCSSCTTCCCCGGGHHHH
T ss_pred             ------ccCCHHHHHHHHHhhCCc----CCceeecCCCcccCCCC-----------------CCCCchhhhhhHHHHHHH
Confidence                  124689999999999985    47999999987666654                 479999999999999999


Q ss_pred             CCCCCCCCcccceEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhccchhhhhccc
Q 044388          382 YESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLV  461 (717)
Q Consensus       382 ~~~~~I~GV~~P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~~~d~L~~~~  461 (717)
                      +.+.+|+|||+||||+||+||+||||+||++||||||+|+|+||+||+||++++++||++|++.+|+++.+|++||+|++
T Consensus       185 ~~~~~I~GVn~P~LYiGm~~S~f~WH~ED~~L~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~P~~~~~~~~~L~h~~  264 (381)
T 2ox0_A          185 ESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKM  264 (381)
T ss_dssp             HHCCCCBTTTSCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHHHHHHSHHHHHHCTTGGGGSC
T ss_pred             hcCCCCCCcccceEEeeccccCcCceecCCcceeeEEeecCCceEEEecCHHHHHHHHHHHHHhChhhhhcchHHhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccChhhHHhCCCCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCccccchhHHHHHHHhcCCCCCCCHHHHH
Q 044388          462 TQLSPSILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKTSISHDKLL  541 (717)
Q Consensus       462 ~~isP~~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~Wl~~g~~a~~~y~~~~~~~~~s~d~Ll  541 (717)
                      ++++|+.|+++||||++++|+|||||||||+|||+|||+||||+||||||+++|+++|+.|.++++.. ....|+|+.|+
T Consensus       265 ~~isP~~L~~~GIpv~r~vQ~pGEfViTfP~aYH~gfn~GfN~aEAvNFA~~~Wl~~g~~a~~c~c~~-~~v~i~~d~~~  343 (381)
T 2ox0_A          265 TLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAVLCSCRK-DMVKISMDVFV  343 (381)
T ss_dssp             EEECHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEECSSEEEEEEEECCTTHHHHHHHCCCCCSST-TCCCCCCHHHH
T ss_pred             cccCHHHHHHCCCceEEEEecCCCEEEECCCcEEEeecCcccHHHHhccCcHHHHHHhHhhhhccccC-CceeecHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999887654 45677899987


Q ss_pred             HHHHHHHHHHHH
Q 044388          542 LGAAREAVRAHW  553 (717)
Q Consensus       542 ~~~A~~~~~~~~  553 (717)
                      -++ +...+..|
T Consensus       344 ~~~-~~~~~~~w  354 (381)
T 2ox0_A          344 RKF-QPERYKLW  354 (381)
T ss_dssp             HHH-CGGGHHHH
T ss_pred             HHh-ChHHHHHH
Confidence            554 33333444
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A* Back     alignment and structure
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Back     alignment and structure
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Back     alignment and structure
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A* Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Back     alignment and structure
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens} Back     alignment and structure
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Back     alignment and structure
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Back     alignment and structure
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Back     alignment and structure
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A* Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... Back     alignment and structure
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* Back     alignment and structure
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query717
d1vrba1319 Putative asparaginyl hydroxylase YxbC {Bacillus su 97.27
d1h2ka_335 Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum 97.07
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=97.27  E-value=0.00037  Score=69.47  Aligned_cols=114  Identities=14%  Similarity=0.068  Sum_probs=79.4

Q ss_pred             cceEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhcc-----chhhhhccccccCh
Q 044388          392 VPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEE-----QPDLLHKLVTQLSP  466 (717)
Q Consensus       392 ~P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~-----~~d~L~~~~~~isP  466 (717)
                      ...+++|..++.+.+|.+.++  .++.+..| .|.|+..|+.+...+       ++.....     ..++... ..   .
T Consensus       123 ~~~~~~~~~g~~~~~H~D~~d--~f~~Qv~G-~K~W~L~~p~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~---~  188 (319)
T d1vrba1         123 KAIVYAAKNGGGFKAHFDAYT--NLIFQIQG-EKTWKLAKNENVSNP-------MQHYDLSEAPYYPDDLQSY-WK---G  188 (319)
T ss_dssp             EEEEEEECSSCCCCSEECSSE--EEEEEEES-CEEEEEECCSSCSSC-------SSCEECC----CCHHHHHH-CC---S
T ss_pred             eeEEEecCCCCCCccccCCCc--eeEEeecc-eEEEEEeCCcccccc-------ccCcccccCcccccccccc-ch---h
Confidence            346888999999999998764  34555567 799999998764421       1100000     0000000 00   0


Q ss_pred             hhHHhCCCCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCccccch
Q 044388          467 SILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHG  519 (717)
Q Consensus       467 ~~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~Wl~~g  519 (717)
                      ......+.+.+.++++|||.+++=+|-+|.+.|.|-+++-++||..++|.++-
T Consensus       189 ~~~~~~~~~~~~~~L~pGDvLYiP~gw~H~v~s~~~sis~sv~f~~~~~~d~~  241 (319)
T d1vrba1         189 DPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQPAWLDLM  241 (319)
T ss_dssp             CCCCTTCCSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCCBHHHHH
T ss_pred             hchhhhcCccEEEEECCCCEEEeCCCceEEeEecCCeEEEEEEecCCCHHHHH
Confidence            01123566889999999999999999999999999999999999999988763
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure