Citrus Sinensis ID: 044391

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-
Protein Sequence
MQEVLARSKGRMLSATDDSAMMKQVQASHAPDGREVDVRPILSIIEDIFRRATPSTIDGVGTREHVDALDNNASPAALSGMLDALSCDIRKISCEISCKCSGGEEAHATTMDLFNILSVYSWDAKMVLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNALKPQLDALIKVMLDLTKCIVEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVACHSQILSLAGLRDEYTASNTDAWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETIHMDNMKVLRALIYAKDDIQPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDEEILVLHLYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARLESMLYSKLQHGATVEDDHIMQEVMTILSFDGSEQGWAIFWRGTHEMARAKGEMAVDCMMEFEKWKDDADQMGFVAGLNNYLQRVHTPRHCNRLILPDIHGPIPERLACAECGRTMEMFFMYRCCPE
Secondary Structure (PSIPRED)
cHHHHHcccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHEEEEcccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccccccEEEcccccccEEEEEEEcccccHHHHHHHHHHHHHHccccccEEEEEEEcccccccccHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHcccccEEEEEEcccccEEcccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHEEcccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccEEEEEccccHHHHccHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccEEccccccccccEEEcccccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccHHHHcccccccccccHHHHHHHHHHHccccccEccHHHHHHHHHHHHHHHcccccccccccccHHHHHccccccccccccccHccHHHHEEHEEEccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccEEEEEHHEcccEEEEEEccccccHHHHHHHHHHHHHHccccccEEEEEEEEEcccccccHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHccccccEEEEEcccccEEcHcHHHHHHHHccccccccHHHHHHHHHHHcccHHHHEccccHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHcHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccEEEEEccccEEEEEccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccEEEEcccccccccEEEccccccccEEEEEEEcccc
Coil and Loop (DISEMBL)
MQEVLARskgrmlsatddsAMMKQVqashapdgrevdvrpILSIIEDIFrratpstidgvgtrehvdaldnnaspaALSGMLDALScdirkisceisckcsggeeahaTTMDLFNILSVYSWDAKMVLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNALKPQLDALIKVMLDLTKCIVEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVACHSQILSLAglrdeytasntdAWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETIHMDNMKVLRALIYakddiqpvvdgssrtrvNIEVLRRKHVLLLISSLDLSDEEILVLHLYREHKAREEFDYAIVWLPivdrsiawdEGYRQKFEQLQAMmpwytvqhptiiePAVVKYAKEVWKFSKkailvpvdpqgrilnqNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGmayvgknnAKERFRKISRIVIQEnlshtltdptEVWFFWARLESMLYSKlqhgatveddHIMQEVMTILSFDGSEQGWAIFWRGTHEMARAKGEMAVDCMMEFEKWKDDADQMGFVAGLNNYLqrvhtprhcnrlilpdihgpiperlacAECGRTMEMFFMYRCCPE
Flexible Loop (DISEMBL)
mqevlarskgrmlsatddsaMMKQVQashapdgrevdvRPILSIIEDIFRRATPSTIDGVGTREHVDALDNNASPAALSGMLDALSCDIRKISCEISCKCSGGEEAHATTMDLFNILSVYSWDAKMVLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNALKPQLDALIKVMLDLTKCIVEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVACHSQILSLAGLRDEYTASNTDAWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETIHMDNMKVLRALIYAkddiqpvvdgssrtrvnievlRRKHVLLLissldlsdeeILVLHLYREHKareefdyaiVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQInlgmayvgknnaKERFRKISRIVIqenlshtltdpTEVWFFWARLESMLYSKLQHGATVEDDHIMQEVMTILSFDGSEQGWAIFWRGTHEMARAKGEMAVDCMMEFEKWKDDADQMGFVAGLNNYLQRVHTPRHCNRLilpdihgpipERLACAECGRTMEMFFMYRCCPE
Low Complexity Region (SEG)
MQEVLARSKGRMLSATDDSAMMKQVQASHAPDGREVDVRPILSIIEDIFRRATPSTIDGVGTREHVDALDNNASPAALSGMLDALSCDIRKISCEISCKCSGGEEAHATTMDLFNILSVYSWDAKMVLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNALKPQLDALIKVMLDLTKCIVEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVACHSQILSLAGLRDEYTASNTDAWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETIHMDNMKVLRALIYAKDDIQPVVDGSSRTRVNIEVLRRKHvlllissldlsdeeilvlHLYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARLESMLYSKLQHGATVEDDHIMQEVMTILSFDGSEQGWAIFWRGTHEMARAKGEMAVDCMMEFEKWKDDADQMGFVAGLNNYLQRVHTPRHCNRLILPDIHGPIPERLACAECGRTMEMFFMYRCCPE
Disordered region (IsUnstruct)
************************************DVRPILSIIEDIFRRATPSTIDGVGTREHVDALD****PAALSGMLDALSCDIRKISCEISCKCSGGEEAHATTMDLFNILSVYSWDAKMVLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNALKPQLDALIKVMLDLTKCIVEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVACHSQILSLAGLRDEYTASNTDAWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETIHMDNMKVLRALIYAKDDIQPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDEEILVLHLYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARLESMLYSKLQHGATVEDDHIMQEVMTILSFDGSEQGWAIFWRGTHEMARAKGEMAVDCMMEFEKWKDDADQMGFVAGLNNYLQRVHTPRHCNRLILPDIHGPIPERLACAECGRTMEMFFMYRCC**
Disordered Region (DISOPRED)
*******************AMMKQVQASHAPDGREVDVRPILSIIEDIFRRATPSTI********************LSGMLDALSCDIRKISCEISCKCSGGEEAHATTMDLFNILSVYSWDAKMVLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNALKPQLDALIKVMLDLTKCIVEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVACHSQILSLAGLRDEYTASNTDAWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETIHMDNMKVLRALIYAKDDIQPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDEEILVLHLYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARLESMLYSK*********DHIMQEVMTILSFDGSEQGWAIFWRGTHEMARAKGEMAVDCMMEFEKWKDDADQMGFVAGLNNYLQRVHTPRHCNRLILPDIHGPIPERLACAECGRTMEMFFMYRCCPE
Disordered Region (DISEMBL)
*************SATDDSAMMKQVQASHAPDGREVDVRPILSIIEDIFRRATPSTIDGVGTREHVDALDNNASPAALSGMLDALSCDIRKISCEISCKCSGGEEAHATTMDLFNILSVYSWDAKMVLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNALKPQLDALIKVMLDLTKCIVEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVACHSQILSLAGLRDEYTASNTDAWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETIHMDNMKVLRALIYAKDDIQPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDEEILVLHLYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARLESMLYSKLQHGATVEDDHIMQEVMTILSFDGSEQGWAIFWRGTHEMARAKGEMAVDCMMEFEKWKDDADQMGFVAGLNNYLQRVHTPRHCNRLILPDIHGPIPERLACAECGRTMEMFFMYRCCPE
Disordered Region (DISPRO)
************LSATDDSAMMKQVQASHAPDGREVDVRPILSIIEDIFRRATPS********EHVDAL*NNASPAALSGMLDALSCDIRKISCEISCKCSGGEEAHATTMDLFNILSVYSWDAKMVLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNALKPQLDALIKVMLDLTKCIVEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVACHSQILSLAGLRDEYTASNTDAWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETIHMDNMKVLRALIYAKDDIQPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDEEILVLHLYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARLESMLYSKLQHGATVEDDHIMQEVMTILSFDGSEQGWAIFWRGTHEMARAKGEMAVDCMMEFEKWKDDADQMGFVAGLNNYLQRVHTPRHCNRLILPDIHGPIPERLACAECGRTMEMFFMYRCCPE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQEVLARSKGRMLSATDDSAMMKQVQASHAPDGREVDVRPILSIIEDIFRRATPSTIDGVGTREHVDALDNNASPAALSGMLDALSCDIRKISCEISCKCSGGEEAHATTMDLFNILSVYSWDAKMVLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNALKPQLDALIKVMLDLTKCIVEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVACHSQILSLAGLRDEYTASNTDAWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETIHMDNMKVLRALIYAKDDIQPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDEEILVLHLYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARLESMLYSKLQHGATVEDDHIMQEVMTILSFDGSEQGWAIFWRGTHEMARAKGEMAVDCMMEFEKWKDDADQMGFVAGLNNYLQRVHTPRHCNRLILPDIHGPIPERLACAECGRTMEMFFMYRCCPE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	691
359806555	698	uncharacterized protein LOC100811452 [Gl	0.988	0.978	0.583	0.0
297733661	708	unnamed protein product [Vitis vinifera]	0.991	0.967	0.567	0.0
359806206	705	uncharacterized protein LOC100789215 [Gl	0.988	0.968	0.580	0.0
255547988	701	conserved hypothetical protein [Ricinus	0.981	0.967	0.546	0.0
225424590	714	PREDICTED: uncharacterized protein LOC10	0.994	0.962	0.548	0.0
449501442	698	PREDICTED: uncharacterized LOC101204444	0.984	0.974	0.547	0.0
449440983	694	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.984	0.979	0.544	0.0
147858235	714	hypothetical protein VITISV_026532 [Viti	0.994	0.962	0.548	0.0
255572046	805	conserved hypothetical protein [Ricinus	0.994	0.853	0.530	0.0
147821880	693	hypothetical protein VITISV_041167 [Viti	0.969	0.966	0.548	0.0

>gi|359806555|ref|NP_001241263.1| uncharacterized protein LOC100811452 [Glycine max] gi|307101640|gb|ADN32785.1| sieve element occlusion c [Glycine max]

 Score =  844 bits (2180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/689 (58%), Positives = 529/689 (76%), Gaps = 6/689 (0%)

Query: 7   RSKGRMLSATDDSAMMKQVQASHAPDGREVDVRPILSIIEDIFRRATPSTIDGVGTREHV 66
           R + RM S +DDSAM KQV+A+HAPDGRE+DV+PIL I+++I  R    T++G   +   
Sbjct: 12  RRERRMFSTSDDSAMTKQVEATHAPDGREIDVKPILQIVDEILVRFIARTVEGHEVKRDQ 71

Query: 67  DALDNNASPAALSGMLDALSCDIRKISCEISCKCSGGEEAHATTMDLFNILSVYSWDAKM 126
           DAL+  A+ A    MLD+L+  I KISCE+SCKCSGG +AH++TM L N +S Y+W AK+
Sbjct: 72  DALEMTAALAEFD-MLDSLAYIINKISCELSCKCSGGGDAHSSTMVLLNYMSSYAWHAKV 130

Query: 127 VLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNALKPQLDALIKVM--- 183
           VL+LAAFA+ +G+FWL AQL  +N+LAKS+A+LKQLP++ E++ +LKP  +ALI+++   
Sbjct: 131 VLTLAAFAVIFGEFWLVAQLSAENTLAKSVALLKQLPDIAENFMSLKPHFEALIRLVKAA 190

Query: 184 LDLTKCIVEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVACHSQILSLAGLRDEY 243
           +D+T CIVEFK+LPS+YIS D   MS A    P A+YW  RSIVAC SQI SL G+R+E 
Sbjct: 191 MDVTMCIVEFKELPSEYISEDTPPMSVASTHIPIASYWVIRSIVACSSQIASLVGMRNES 250

Query: 244 TASNTDAWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETIHMDNMK 303
            +S T+AWEL+SLAH+VS I EH K  + +CYQ ID+ R IEA+HNL+RL ET+H+DNMK
Sbjct: 251 ISSTTEAWELSSLAHKVSSIYEHLKNQLVLCYQYIDDKRHIEAFHNLIRLFETVHVDNMK 310

Query: 304 VLRALIYAKDDIQPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDEEILVL-HLYREHKA 362
           +LRALIYAKDD+ P+VDG++++RV++EVLRRKHVLLLIS LDLS EEILVL +LY++ +A
Sbjct: 311 ILRALIYAKDDVLPLVDGTTKSRVSLEVLRRKHVLLLISDLDLSQEEILVLDNLYKDARA 370

Query: 363 REEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVKYAKEVWKF 422
           R +  Y +VW+P+VD++  W+E  +QKFE LQ++M WY+V  P IIEP+ +KY KEVW F
Sbjct: 371 RGDTHYEMVWIPVVDKA-TWNETSKQKFEYLQSLMAWYSVYDPFIIEPSAIKYIKEVWNF 429

Query: 423 SKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDIDAT 482
           SK AILV +DPQG++ + N  HMLWIWGNLAFPF++EKE +LWK E W LELL+D ID T
Sbjct: 430 SKTAILVALDPQGKLSSPNVVHMLWIWGNLAFPFTSEKEESLWKQEIWSLELLVDGIDPT 489

Query: 483 ILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFRKISRI 542
           +LEWM + + ICLYGG D+EWI +FTT+A +VA+A +  L MAYVGK+NAKER +K+ + 
Sbjct: 490 VLEWMTDGKLICLYGGEDLEWIEKFTTTAISVAKAGKFELEMAYVGKSNAKERMQKMIKT 549

Query: 543 VIQENLSHTLTDPTEVWFFWARLESMLYSKLQHGATVEDDHIMQEVMTILSFDGSEQGWA 602
                 S+   + T +WFFW RLESMLYSKLQHG TVE+D IM +VMT+LSFDGS++GWA
Sbjct: 550 FTTRKFSYFWPNVTSIWFFWTRLESMLYSKLQHGRTVENDDIMSQVMTVLSFDGSDRGWA 609

Query: 603 IFWRGTHEMARAKGEMAVDCMMEFEKWKDDADQMGFVAGLNNYLQRVHTPRHCNRLILPD 662
           IF RG  EMARAKG+ A+ C+ +F+KWKD  ++ G V  +N+YL +   P HCNRLILP 
Sbjct: 610 IFCRGATEMARAKGDSALICLQDFDKWKDRIEEDGVVQAMNDYLNKNKPPHHCNRLILPG 669

Query: 663 IHGPIPERLACAECGRTMEMFFMYRCCPE 691
             G IP+++ CAECGR ME +FMYRCC E
Sbjct: 670 STGGIPQKVVCAECGRQMEKYFMYRCCVE 698

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733661|emb|CBI14908.3| unnamed protein product [Vitis vinifera]

 Score =  836 bits (2160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/691 (56%), Positives = 520/691 (75%), Gaps = 6/691 (0%)

Query: 6   ARSKGRMLSATDDSAMMKQVQASHAPDGREVDVRPILSIIEDIFRRATPSTIDGV--GTR 63
            R   + L  +DD+ MMKQ+QA+H PDGREV+V+PI+ +IEDI   ATP+ IDG   G  
Sbjct: 19  GRDHPKFLRMSDDTTMMKQIQATHTPDGREVEVKPIVQVIEDILNHATPA-IDGTLYGNP 77

Query: 64  EHVDALDNNASPAALSGMLDALSCDIRKISCEISCKCSGGEEAHATTMDLFNILSVYSWD 123
            H++AL++ +S   L G+L+ L+  I+K+SCE+SCKCSGG +AHATTM +FN+LS YSWD
Sbjct: 78  PHLEALEDRSSQDGLHGILEELAYTIQKLSCELSCKCSGGGDAHATTMAVFNMLSHYSWD 137

Query: 124 AKMVLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNALKPQLDA---LI 180
           AK+VLSLAAFA NYG+FWL  QL   N LAKS+A+LKQLP+++EH N+LK + DA   LI
Sbjct: 138 AKVVLSLAAFAANYGEFWLVIQLYATNPLAKSVALLKQLPDIIEHGNSLKSRFDAVTKLI 197

Query: 181 KVMLDLTKCIVEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVACHSQILSLAGLR 240
           KVMLD+TK I+EFK+LPS YIS D   MS+ MA  P AAYWT R IVAC SQI+SL G  
Sbjct: 198 KVMLDVTKSIIEFKELPSLYISPDMPPMSSTMAHIPTAAYWTIRGIVACASQIISLIGTS 257

Query: 241 DEYTASNTDAWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETIHMD 300
           +EYT+  T++WEL++LAH+VS I EH  + + IC+Q I+E +Q E+Y+NLVR+ E  H+D
Sbjct: 258 NEYTSWTTESWELSTLAHKVSSIHEHLIQQLIICHQHIEEKKQFESYNNLVRIFEMPHLD 317

Query: 301 NMKVLRALIYAKDDIQPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDEEILVLHLYREH 360
           N KVL+ LIYAK+DIQP++ G+++ RVNIE+LRRK VLLLIS LDL  EEI++LH +   
Sbjct: 318 NQKVLKTLIYAKEDIQPLLQGNTKARVNIEILRRKTVLLLISDLDLLHEEIVILHKFYRE 377

Query: 361 KAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVKYAKEVW 420
           + + + +Y +VWL +VDRS    E  + KF +LQ  MPWYT+ HP+++EPAVV+Y KEVW
Sbjct: 378 QIKSDVEYEVVWLSVVDRSKPLTEENQNKFHELQKEMPWYTLLHPSLLEPAVVRYIKEVW 437

Query: 421 KFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDID 480
            F+KKAILV +D QG+++ +NA HM+WIWGN A+PF+  KE +LWK E+WRL+LL+DDID
Sbjct: 438 HFTKKAILVVLDLQGKVVCRNALHMMWIWGNTAYPFTNSKEESLWKEETWRLKLLVDDID 497

Query: 481 ATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFRKIS 540
           ATI  W+ + +YIC+YGG + +WI  F T+A+ VA+AA I L M YVGK+NAKE+ RK  
Sbjct: 498 ATIFAWVNQGKYICMYGGVNSDWILNFNTAAREVAKAAGIQLEMVYVGKSNAKEQVRKTI 557

Query: 541 RIVIQENLSHTLTDPTEVWFFWARLESMLYSKLQHGATVEDDHIMQEVMTILSFDGSEQG 600
             +   +L +  TDPT +WFFW R+ESMLYSK QHG T+E+D I   V+T+LSFDGS+QG
Sbjct: 558 TFIDSRSLGYCWTDPTNIWFFWTRMESMLYSKTQHGKTIENDSIFAGVLTMLSFDGSDQG 617

Query: 601 WAIFWRGTHEMARAKGEMAVDCMMEFEKWKDDADQMGFVAGLNNYLQRVHTPRHCNRLIL 660
           W++   G  EMA+AKG+M + C  E+  W D+  Q GF+  LN +LQ++HTP HCNRLIL
Sbjct: 618 WSVICHGPTEMAKAKGDMILKCFTEYSDWSDNVQQNGFMPALNEHLQKLHTPEHCNRLIL 677

Query: 661 PDIHGPIPERLACAECGRTMEMFFMYRCCPE 691
           P I+G IPE++ CAECGR ME +FMYRCC +
Sbjct: 678 PGINGDIPEKVVCAECGRPMEKYFMYRCCTD 708

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806206|ref|NP_001241461.1| uncharacterized protein LOC100789215 [Glycine max] gi|307101642|gb|ADN32786.1| sieve element occlusion d [Glycine max]

 Score =  835 bits (2157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/689 (58%), Positives = 524/689 (76%), Gaps = 6/689 (0%)

Query: 7   RSKGRMLSATDDSAMMKQVQASHAPDGREVDVRPILSIIEDIFRRATPSTIDGVGTREHV 66
           R + +  S +DDSAM KQVQA+HAPDGRE+DV+PIL I+++I  R    T++G   +   
Sbjct: 19  RKERQRFSTSDDSAMTKQVQATHAPDGREIDVKPILQIVDEILVRFIARTVEGYEVKRDQ 78

Query: 67  DALDNNASPAALSGMLDALSCDIRKISCEISCKCSGGEEAHATTMDLFNILSVYSWDAKM 126
           DAL+  A+ A    MLD+L+  I KISCE+SCKCSGG +AH++TM L N +S Y+W AK+
Sbjct: 79  DALEMTAALAEFD-MLDSLAYIINKISCELSCKCSGGGDAHSSTMVLLNYISSYAWHAKV 137

Query: 127 VLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNALKPQLDALIKVM--- 183
           VL+LAAFA+ +G+FWL AQL  +N+LAKS+A+LKQLP++ E++ ++KP  +ALI+++   
Sbjct: 138 VLTLAAFAVIFGEFWLVAQLSAENTLAKSVALLKQLPDIAENFMSMKPHFEALIRLVKAA 197

Query: 184 LDLTKCIVEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVACHSQILSLAGLRDEY 243
           +D+T CIVEFK+LPS+YIS D   MS A    P A+YW  RSIVAC SQI S  G+R+E 
Sbjct: 198 MDVTMCIVEFKELPSEYISEDTPPMSVASTHIPIASYWVIRSIVACSSQISSFIGMRNES 257

Query: 244 TASNTDAWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETIHMDNMK 303
            +S T+AWEL+SLAH+VS I EH K  + +CYQ ID+ R IEA+HNL+RL ET+H+DNMK
Sbjct: 258 ISSTTEAWELSSLAHKVSSIYEHLKNQLVLCYQYIDDKRHIEAFHNLIRLFETVHVDNMK 317

Query: 304 VLRALIYAKDDIQPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDEEILVL-HLYREHKA 362
           +LRALIYAKDD+ P+VDG++++RV++EVLRRKHVLLLIS LDLS EEILVL +LY++ +A
Sbjct: 318 ILRALIYAKDDVLPLVDGTAKSRVSLEVLRRKHVLLLISDLDLSQEEILVLDNLYKDARA 377

Query: 363 REEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVKYAKEVWKF 422
           R +  Y +VW+PIVD++  W++  +QKFE LQ++M WY+V  P IIEP+ VKY KEVW F
Sbjct: 378 RGDTQYEMVWIPIVDKA-TWNDMSKQKFEYLQSLMAWYSVYDPFIIEPSAVKYIKEVWNF 436

Query: 423 SKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDIDAT 482
           SKKAILV +DPQGR+ + NA HM+WIWGNLAFPF++EKE +LWK E W LELL+D ID T
Sbjct: 437 SKKAILVALDPQGRLSSPNAVHMIWIWGNLAFPFTSEKEESLWKQEIWSLELLVDGIDPT 496

Query: 483 ILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFRKISRI 542
           +LEWM E + ICLYGG D+EWI +FT +A +VA+A +  L MAY GK+NAKER +K+ + 
Sbjct: 497 VLEWMTEGKLICLYGGEDLEWIEKFTATAISVAKAGKFELEMAYAGKSNAKERMQKMIKT 556

Query: 543 VIQENLSHTLTDPTEVWFFWARLESMLYSKLQHGATVEDDHIMQEVMTILSFDGSEQGWA 602
                 S+   + T +WFFW RLESMLYSKL HG TVE D IM EVMT+LSFDGS++GWA
Sbjct: 557 FTTRKFSYFWPNVTSIWFFWTRLESMLYSKLLHGRTVEKDEIMSEVMTVLSFDGSDRGWA 616

Query: 603 IFWRGTHEMARAKGEMAVDCMMEFEKWKDDADQMGFVAGLNNYLQRVHTPRHCNRLILPD 662
           IF RG  EMARAKG+ A+ C+ +F+KWK   ++ G V  +N+YL +   P HCNRLILP 
Sbjct: 617 IFCRGATEMARAKGDSALRCLQDFDKWKGRIEEDGVVHAINDYLNKNKPPHHCNRLILPG 676

Query: 663 IHGPIPERLACAECGRTMEMFFMYRCCPE 691
             G IP+++ CAECGR ME +FMYRCC E
Sbjct: 677 STGGIPQKVVCAECGRQMEKYFMYRCCVE 705

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547988|ref|XP_002515051.1| conserved hypothetical protein [Ricinus communis] gi|223546102|gb|EEF47605.1| conserved hypothetical protein [Ricinus communis]

 Score =  814 bits (2102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/694 (54%), Positives = 514/694 (74%), Gaps = 16/694 (2%)

Query: 7   RSKGRMLSATDDSAMMKQVQASHAPDGREVDVRPILSIIEDIFRRATPSTIDGVGTREHV 66
           R +  M S +DD+AMMKQ+QA+HAPDGRE DVRP+L+++ED+F+RA P +      +   
Sbjct: 11  RGERHMFSTSDDNAMMKQIQATHAPDGREFDVRPLLNVVEDVFQRAVPPSGLATIVQPQE 70

Query: 67  DALDNNASPAALSGMLDALSCDIRKISCEISCKCSGGEEAHATTMDLFNILSVYSWDAKM 126
             L N         MLD LS  I KISCEI+CKCSGG +AHATT+ +FN++S YSWDAK+
Sbjct: 71  KTLQN-----GFYEMLDLLSYTINKISCEIACKCSGGGDAHATTLAIFNLVSSYSWDAKL 125

Query: 127 VLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNALKPQLDA---LIKVM 183
           VL+LAAFA+NYG+FWL A L   N LAK++A+LKQLP++LE  +ALKP+ +A   LI+  
Sbjct: 126 VLALAAFAVNYGEFWLVAHLYLTNPLAKAVALLKQLPDILERADALKPKFEAVSSLIRAA 185

Query: 184 LDLTKCIVEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVACHSQILSLAGLRDEY 243
           LD+ KCIVEFK+LP QYI+ DA  M  A A  P A YWT RSIVAC +QI+ L G+  EY
Sbjct: 186 LDVAKCIVEFKELPPQYITPDAPEMLIATAHIPTAVYWTIRSIVACATQIIGLIGMGHEY 245

Query: 244 TASNTDAWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETIHMDNMK 303
            AS T+AWEL+SLAH+V  I EH  + + +CY  IDE R +EAY  L+RL +TIH+DN+K
Sbjct: 246 MASTTEAWELSSLAHKVRSIHEHLMRQLTLCYHHIDEKRHVEAYQTLIRLFDTIHIDNIK 305

Query: 304 VLRALIYAKDDIQPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDEEILVL-HLY---RE 359
           +LRALIYAKDD  P+ DG ++ R +++VLRRK+VLL IS LDL  EE+ +L  +Y   R+
Sbjct: 306 ILRALIYAKDDQLPLYDGHNKKRASLDVLRRKNVLLYISDLDLPHEELSMLEQMYSEARQ 365

Query: 360 HKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVKYAKEV 419
           + AR E  Y +VWLP+V+RS AW++  +++FE LQ++MPWYTV HP++++PAV++Y KE 
Sbjct: 366 NPARTESHYEVVWLPVVERSTAWNDAKQKQFENLQSVMPWYTVYHPSLLDPAVIRYIKEF 425

Query: 420 WKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDI 479
           WKF+KK +LV +DPQG+++N NA HM+WIWG+ AFPF++ +E ALW+AE+W+++LL D I
Sbjct: 426 WKFNKKPLLVVLDPQGKVVNPNAIHMMWIWGSAAFPFTSVREEALWRAENWKIDLLADTI 485

Query: 480 DATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFRKI 539
           D  I  W+++ +YICLYGG DIEWIR+FT +A A+A+AA I+L M YVGK+N +E+ RK 
Sbjct: 486 DPIIHSWIQQGKYICLYGGEDIEWIRKFTMTANALAQAAGIDLEMLYVGKSNPREKVRKN 545

Query: 540 SRIVIQENLSHTLTDPTEVWFFWARLESMLYSKLQHGATVEDDHIMQEVMTILSFDGSEQ 599
           + I+  E LSH L D T +WFFW RLESM +SK+QH  TVE+D IMQE++T+LSFDGS+Q
Sbjct: 546 NIIIQNEKLSHVLQDLTLIWFFWVRLESMWHSKVQHNRTVENDIIMQEIVTMLSFDGSDQ 605

Query: 600 GWAIFWRGT----HEMARAKGEMAVDCMMEFEKWKDDADQMGFVAGLNNYLQRVHTPRHC 655
           GWA+  +G+     ++A+AKG   ++C  +++ W++ A++ GFV  + +YL   H P HC
Sbjct: 606 GWAVISKGSGAENRQLAKAKGSDILNCFDDYQSWREIAEEEGFVPAILDYLHGHHNPLHC 665

Query: 656 NRLILPDIHGPIPERLACAECGRTMEMFFMYRCC 689
           NRLILP   G IPE++ CAEC R ME F MYRCC
Sbjct: 666 NRLILPGTTGSIPEKVVCAECSRPMEKFIMYRCC 699

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424590|ref|XP_002282172.1| PREDICTED: uncharacterized protein LOC100261038 [Vitis vinifera] gi|296081390|emb|CBI16823.3| unnamed protein product [Vitis vinifera]

 Score =  813 bits (2100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/705 (54%), Positives = 508/705 (72%), Gaps = 18/705 (2%)

Query: 1   MQEVLARSKGRMLSATDDSAMMKQVQASHAPDGREVDVRPILSIIEDIFRR--------- 51
           +Q V  RS  RM  A+DD+ +MKQ+ A H PDGR+ DV+P+L I+E+I  R         
Sbjct: 10  VQRVRQRSGDRMF-ASDDNGIMKQIHAIHVPDGRDFDVKPLLRIVENILLRTTSSTTLTP 68

Query: 52  ATPSTIDGVGTREHVDALDNNASPAALSGMLDALSCDIRKISCEISCKCSGGEEAHATTM 111
           A P    G   +  +DAL++       S M+D L+  I KISCEISCKC+ G +AHAT +
Sbjct: 69  ALPGIPLG-SNQAQLDALEDKTLQDGSSNMIDLLAHTINKISCEISCKCTSGGDAHATAV 127

Query: 112 DLFNILSVYSWDAKMVLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNA 171
            +FNILS YSWDAK+VL+LAAFA  YG+FWL A L   N LAKS+A+LKQLP++LEH +A
Sbjct: 128 AVFNILSSYSWDAKVVLALAAFATTYGEFWLVAHLYPTNPLAKSVAILKQLPDILEHTDA 187

Query: 172 LKPQLDAL---IKVMLDLTKCIVEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVA 228
           LKP+ +AL   IKVM+D+ KCIV+FK+LP QYI+ D  AM TA+A  P A YWT RSIVA
Sbjct: 188 LKPKFEALSSLIKVMVDVAKCIVQFKELPPQYITPDTPAMVTAIAHIPTAVYWTIRSIVA 247

Query: 229 CHSQILSLAGLRDEYTASNTDAWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYH 288
           C SQI SL G+  EY AS  DAWEL+ LAH+VS +  H +  + +C Q I++ + IEAY 
Sbjct: 248 CASQIASLIGMSHEYIASTMDAWELSGLAHKVSNMYGHLQSQLYLCQQHINDKKHIEAYM 307

Query: 289 NLVRLLETIHMDNMKVLRALIYAKDDIQPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSD 348
            LVRL ET H+DNMK++R LIYAKDD  P+ DG S+ +V++++LRRK+VLL IS L++  
Sbjct: 308 MLVRLFETPHIDNMKIIRVLIYAKDDQPPLFDGLSKRKVSLDILRRKNVLLFISELEVPH 367

Query: 349 EEILVL-HLYREHK---AREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQH 404
           EE+ +L  +Y+E +    R E  Y +VW+P+VDRS  W E   ++FE L++MMPWY+V H
Sbjct: 368 EELFILDQMYQESRQDPTRPESQYEVVWMPMVDRSTPWTEEKNRQFETLKSMMPWYSVDH 427

Query: 405 PTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAAL 464
           P+ I+ AV+KY KE+W F+KK +LV +DPQGR++N NA HM+WIWG+LAFPF++ +E  L
Sbjct: 428 PSSIDLAVIKYIKEMWGFNKKPLLVVLDPQGRVVNNNAIHMMWIWGSLAFPFTSLREEGL 487

Query: 465 WKAESWRLELLIDDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGM 524
           WK E+WR+ELL D ID  I  W+ E  YICL+GG D+EWIR+F   AKA+ARAA I L M
Sbjct: 488 WKGETWRMELLADTIDPIIHNWISEGSYICLFGGEDMEWIRKFCILAKAIARAAGIRLEM 547

Query: 525 AYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARLESMLYSKLQHGATVEDDHI 584
            YVGK+N +E+ +KI+ I+  +NLSHTL D   VWFFW RLESM YSK+QHG TVE D I
Sbjct: 548 LYVGKSNPREKIQKINAIISTDNLSHTLPDLHLVWFFWVRLESMWYSKMQHGKTVESDPI 607

Query: 585 MQEVMTILSFDGSEQGWAIFWRGTHEMARAKGEMAVDCMMEFEKWKDDADQMGFVAGLNN 644
           MQE++++LSFDGS+QGW +F +G+ EM +AKGE  V C+ +++ WK++    GF+  LN+
Sbjct: 608 MQEIVSMLSFDGSDQGWVVFSKGSGEMTKAKGENIVRCLSDYDVWKNNVSSKGFLGALND 667

Query: 645 YLQRVHTPRHCNRLILPDIHGPIPERLACAECGRTMEMFFMYRCC 689
           YL+ +HTP HCNRLILP   G IPER+ CAECGR ME F MYRCC
Sbjct: 668 YLREIHTPHHCNRLILPGTTGSIPERVVCAECGRPMEKFVMYRCC 712

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449501442|ref|XP_004161368.1| PREDICTED: uncharacterized LOC101204444 [Cucumis sativus]

 Score =  810 bits (2093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/692 (54%), Positives = 506/692 (73%), Gaps = 12/692 (1%)

Query: 5   LARSKGRMLSATDDSAMMKQVQASHAPDGREVDVRPILSIIEDIFRRATPSTI-DGVGTR 63
           L ++  RML  +DD+AM KQ+ A+H+PD  +VDV+PIL I+E++ R ATP  I  G G  
Sbjct: 14  LTKTDRRMLPVSDDNAMTKQILATHSPDSHKVDVKPILLIVEEVIRHATPDIIAKGNGQ- 72

Query: 64  EHVDALDNNASPAALSGMLDALSCDIRKISCEISCKCSGGEEAHATTMDLFNILSVYSWD 123
                LD+    A + GML+ L+  ++K+  E++CKCSGG+ AHATTM + N+LS YSWD
Sbjct: 73  -----LDDQLGLAEMDGMLEPLAHVVQKVGAELACKCSGGD-AHATTMAILNLLSNYSWD 126

Query: 124 AKMVLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNALKPQLDALIKVM 183
           AK+V++LAAF++ YGQ+WL AQL   N LAK++A+LKQLP+V+EH N+LKP  DAL K++
Sbjct: 127 AKVVITLAAFSVTYGQYWLLAQLYTTNMLAKALALLKQLPDVIEHSNSLKPHFDALSKLI 186

Query: 184 ---LDLTKCIVEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVACHSQILSLAGLR 240
              L++TKCIV+F +LPSQYIS+D  AMS A+A  P AAYWT +S+VAC S I SL  L 
Sbjct: 187 AAILNVTKCIVKFTELPSQYISSDTPAMSVALASFPTAAYWTIKSLVACTSLIESLVSLS 246

Query: 241 DEYTASNTDAWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETIHMD 300
            E   S T+ WEL+SLAH+V  I  H +  + +C Q IDE R  EAY NLVR+ ET+H+D
Sbjct: 247 HELIMSTTEVWELSSLAHKVKDIHGHLQMQLKLCIQYIDEKRHEEAYQNLVRISETLHLD 306

Query: 301 NMKVLRALIYAKDDIQPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDEEILVL-HLYRE 359
           NMK +RA I  ++DI P+ DG+++  V++E+L+RKHVLLLIS LD+  EE+++L +L++E
Sbjct: 307 NMKFIRAFISTREDIHPIYDGTTKMTVHLEILKRKHVLLLISDLDIPHEEVMILDNLFKE 366

Query: 360 HKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVKYAKEV 419
              R E  Y IVW+PI+D +I      + KFE+L+ +MPW++V  P+IIE + +++ KE 
Sbjct: 367 AHQRPEIRYEIVWIPIIDPAIEQHSKSKHKFEELKQLMPWFSVYDPSIIELSTIRFIKEK 426

Query: 420 WKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDI 479
           W F KK ILV +DPQG++ + NA HM+WIWGNLAFPF++E+E  LWK ESWRLELLID I
Sbjct: 427 WNFRKKTILVALDPQGKVSSTNALHMIWIWGNLAFPFTSEREEELWKTESWRLELLIDGI 486

Query: 480 DATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFRKI 539
           D +IL+W  E RYIC+YGG D EWI+ FT+  K VA  A ++L MAYVGKNNAKER RKI
Sbjct: 487 DFSILDWAAEGRYICIYGGEDTEWIKEFTSKTKKVAETANVDLQMAYVGKNNAKERVRKI 546

Query: 540 SRIVIQENLSHTLTDPTEVWFFWARLESMLYSKLQHGATVEDDHIMQEVMTILSFDGSEQ 599
           S ++    LSH   D T VWFFWARLESM+YSKL +G TVE+D IMQE+MT+LSFDGS++
Sbjct: 547 SIMISDNKLSHYWADSTLVWFFWARLESMMYSKLNYGKTVENDPIMQEIMTLLSFDGSDK 606

Query: 600 GWAIFWRGTHEMARAKGEMAVDCMMEFEKWKDDADQMGFVAGLNNYLQRVHTPRHCNRLI 659
           GWAIF+    E  RAKGE  + C++ F++WK++ ++ GFV  L +YLQ++ TP HCNRLI
Sbjct: 607 GWAIFFGRAGETTRAKGETVLSCILAFDQWKEEVEEKGFVKALADYLQQLKTPHHCNRLI 666

Query: 660 LPDIHGPIPERLACAECGRTMEMFFMYRCCPE 691
           LP + G IPE + CAECGR ME + MYRCC E
Sbjct: 667 LPGLAGNIPENVVCAECGRAMEKYLMYRCCVE 698

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440983|ref|XP_004138263.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101204444 [Cucumis sativus]

 Score =  805 bits (2079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/698 (54%), Positives = 506/698 (72%), Gaps = 18/698 (2%)

Query: 5   LARSKGRMLSATDDSAMMKQVQASHAPDGREVDVRPILSIIEDIFRRATPSTI-DGVGTR 63
           L ++  RML  +DD+AM KQ+ A+H+PD  +VDV+PIL I+E++ R ATP  I  G G  
Sbjct: 4   LTKTDRRMLPVSDDNAMTKQILATHSPDSHKVDVKPILLIVEEVIRHATPDIIAKGNG-- 61

Query: 64  EHVDALDNNASPAALSGMLDALSCDIRKISCEISCKCSGGEEAHATTMDLFNILSVYSWD 123
                LD+    A + GML+ L+  ++K+  E++CKCSGG+ AHATTM + N+LS YSWD
Sbjct: 62  ----QLDDQLGLAEMDGMLEPLAHVVQKVGAELACKCSGGD-AHATTMAILNLLSNYSWD 116

Query: 124 AKMVLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNALKPQLDALIKVM 183
           AK+V++LAAF++ YGQ+WL AQL   N LAK++A+LKQLP+V+EH N+LKP  DAL K++
Sbjct: 117 AKVVITLAAFSVTYGQYWLLAQLYTTNMLAKALALLKQLPDVIEHSNSLKPHFDALSKLI 176

Query: 184 ---LDLTKCIVEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVACHSQILSLAGLR 240
              L++TKCIV+F +LPSQYIS+D  AMS A+A  P AAYWT +S+VAC S I SL  L 
Sbjct: 177 AAILNVTKCIVKFTELPSQYISSDTPAMSVALASFPTAAYWTIKSLVACTSLIESLVSLS 236

Query: 241 DEYTASNTDAWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETIHMD 300
            E   S T+ WEL+SLAH+V  I  H +  + +C Q IDE R  EAY NLVR+ ET+H+D
Sbjct: 237 HELIMSTTEVWELSSLAHKVKDIHGHLQMQLKLCIQYIDEKRHEEAYQNLVRISETLHLD 296

Query: 301 NMKVLRALIYAKDDIQPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDEEILVL-HLYRE 359
           NMK +RA I  ++DI P+ DG+++  V++E+L+RKHVLLLIS LD+  EE+++L +L++E
Sbjct: 297 NMKFIRAFISTREDIHPIYDGTTKMTVHLEILKRKHVLLLISDLDIPHEEVMILDNLFKE 356

Query: 360 HKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVKYAKEV 419
              R E  Y IVW+PI+D +I      + KFE+L+ +MPW++V  P+IIE + +++ KE 
Sbjct: 357 AHQRPEIRYEIVWIPIIDPAIEQHSKSKHKFEELKQLMPWFSVYDPSIIELSTIRFIKEK 416

Query: 420 WKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDI 479
           W F KK ILV +DPQG++ + NA HM+WIWGNLAFPF++E+E  LWK ESWRLELLID I
Sbjct: 417 WNFRKKTILVALDPQGKVSSTNALHMIWIWGNLAFPFTSEREEELWKTESWRLELLIDGI 476

Query: 480 DATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFRKI 539
           D +IL+W  E RYIC+YGG D EWI+ FT+  K VA  A ++L MAYVGKNNAKER RKI
Sbjct: 477 DFSILDWAAEGRYICIYGGEDTEWIKEFTSKTKKVAETANVDLQMAYVGKNNAKERVRKI 536

Query: 540 SRIVIQENLSHTLTDPTEVWFFWARLESMLYSKLQHGATVEDDHIMQEVMTILSFDGSEQ 599
           S ++    LSH   D T VWFFWARLESM+YSKL +G TVE+D IMQE+MT+LSFDGS++
Sbjct: 537 SIMISDNKLSHYWADSTLVWFFWARLESMMYSKLNYGKTVENDPIMQEIMTLLSFDGSDK 596

Query: 600 GWAIFWRGTHEMARAKGEMAVDCMMEFEKWKDDADQMGFVAGLNNYLQRVHTPRHCNRLI 659
           GWAIF+    E  RAKGE  + C++ F++WK++ ++ GFV  L +YLQ++ TP HCNRLI
Sbjct: 597 GWAIFFGRAGETTRAKGETVLSCILAFDQWKEEVEEKGFVKALADYLQQLKTPHHCNRLI 656

Query: 660 LP------DIHGPIPERLACAECGRTMEMFFMYRCCPE 691
           LP       I G IPE + CAECGR ME + MYRCC E
Sbjct: 657 LPGLAGNIGIAGNIPENVVCAECGRAMEKYLMYRCCVE 694

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858235|emb|CAN83922.1| hypothetical protein VITISV_026532 [Vitis vinifera]

 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/705 (54%), Positives = 508/705 (72%), Gaps = 18/705 (2%)

Query: 1   MQEVLARSKGRMLSATDDSAMMKQVQASHAPDGREVDVRPILSIIEDIFRR--------- 51
           +Q V  RS  RM  A+DD+ +MKQ+ A H PDGR+ DV+P+L I+E+I  R         
Sbjct: 10  VQRVRQRSGDRMF-ASDDNGIMKQIHAIHVPDGRDFDVKPLLRIVENILLRTTSSTTLTP 68

Query: 52  ATPSTIDGVGTREHVDALDNNASPAALSGMLDALSCDIRKISCEISCKCSGGEEAHATTM 111
           A P    G   +  +DAL++       S M+D L+  I KISCEISCKC+ G +AHAT +
Sbjct: 69  ALPGIPLG-SNQAQLDALEDKTLQDGSSNMIDLLAHTINKISCEISCKCTSGGDAHATAV 127

Query: 112 DLFNILSVYSWDAKMVLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNA 171
            +FNILS YSWDAK+VL+LAAFA  YG+FWL A L   N LAKS+A+LKQLP++LEH +A
Sbjct: 128 AVFNILSSYSWDAKVVLALAAFATTYGEFWLVAHLYPTNPLAKSVAILKQLPDILEHTDA 187

Query: 172 LKPQLDAL---IKVMLDLTKCIVEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVA 228
           LKP+ +AL   IKVM+D+ KCIV+FK+LP QYI+ D  AM TA+A  P A YWT RSIVA
Sbjct: 188 LKPKFEALSSLIKVMVDVAKCIVQFKELPPQYITPDTPAMVTAIAHIPTAVYWTIRSIVA 247

Query: 229 CHSQILSLAGLRDEYTASNTDAWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYH 288
           C SQI SL G+  EY AS  DAWEL+ LAH+VS +  H +  + +C Q I++ + IEAY 
Sbjct: 248 CASQIASLIGMSHEYIASTMDAWELSGLAHKVSNMYGHLQXQLYLCQQHINDKKHIEAYM 307

Query: 289 NLVRLLETIHMDNMKVLRALIYAKDDIQPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSD 348
            LVRL ET H+DNMK++R LIYAKDD  P+ DG S+ +V++++LRRK+VLL IS L++  
Sbjct: 308 MLVRLFETPHIDNMKIIRVLIYAKDDQPPLFDGLSKRKVSLDILRRKNVLLFISELEVPH 367

Query: 349 EEILVL-HLYREHK---AREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQH 404
           EE+ +L  +Y+E +    R E  Y +VW+P+VDRS  W E   ++FE L++MMPWY+V H
Sbjct: 368 EELFILDQMYQESRQDPTRPESQYEVVWMPMVDRSTPWTEEKNRQFETLKSMMPWYSVDH 427

Query: 405 PTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAAL 464
           P+ I+ AV+KY KE+W F+KK +LV +DPQGR++N NA HM+WIWG+LAFPF++ +E  L
Sbjct: 428 PSSIDLAVIKYIKEMWGFNKKPLLVVLDPQGRVVNNNAIHMMWIWGSLAFPFTSLREEGL 487

Query: 465 WKAESWRLELLIDDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGM 524
           WK E+WR+ELL D ID  I  W+ E  YICL+GG D+EWIR+F   AKA+ARAA I L M
Sbjct: 488 WKGETWRMELLADTIDPIIHNWISEGSYICLFGGEDMEWIRKFCILAKAIARAAGIRLEM 547

Query: 525 AYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARLESMLYSKLQHGATVEDDHI 584
            YVGK+N +E+ +KI+ I+  +NLSHTL D   VWFFW RLESM YSK+QHG TVE D I
Sbjct: 548 LYVGKSNPREKIQKINAIISTDNLSHTLPDLHLVWFFWVRLESMWYSKMQHGKTVESDPI 607

Query: 585 MQEVMTILSFDGSEQGWAIFWRGTHEMARAKGEMAVDCMMEFEKWKDDADQMGFVAGLNN 644
           MQE++++LSFDGS+QGW +F +G+ EM +AKGE  V C+ +++ WK++    GF+  LN+
Sbjct: 608 MQEIVSMLSFDGSDQGWVVFSKGSGEMTKAKGENIVRCLSDYDVWKNNVSSKGFLGALND 667

Query: 645 YLQRVHTPRHCNRLILPDIHGPIPERLACAECGRTMEMFFMYRCC 689
           YL+ +HTP HCNRLILP   G IPER+ CAECGR ME F MYRCC
Sbjct: 668 YLREIHTPHHCNRLILPGTTGSIPERVVCAECGRPMEKFVMYRCC 712

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572046|ref|XP_002526964.1| conserved hypothetical protein [Ricinus communis] gi|223533716|gb|EEF35451.1| conserved hypothetical protein [Ricinus communis]

 Score =  800 bits (2065), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/698 (53%), Positives = 509/698 (72%), Gaps = 11/698 (1%)

Query: 5   LARSKGRMLSATDDSAMMKQVQASHAPDGREVDVRPILSIIEDIFRRATPS----TIDGV 60
           L ++   + S++DD+AM KQ+QA+H+PDGRE DV+P+L+I+EDIF RA P+     +   
Sbjct: 108 LIKADRLLFSSSDDNAMTKQIQATHSPDGREFDVKPLLNIVEDIFDRAAPAIESLALPAA 167

Query: 61  GTREHVDALDNNASPAALSGMLDALSCDIRKISCEISCKCSGGEEAHATTMDLFNILSVY 120
                 +ALD+N   +++  ML++LS  I +++ EI+ KCS G EAHA TM + N LS Y
Sbjct: 168 AHHARNEALDDNTYHSSVMAMLESLSFVIDRVASEITYKCSSGGEAHAITMSILNTLSSY 227

Query: 121 SWDAKMVLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNALKPQLDA-- 178
           +WDAK+V++LAAFA+ YG+FWL AQ    N LAKSMA+LK +P++LEH + LKP+ D+  
Sbjct: 228 TWDAKLVIALAAFAMTYGEFWLVAQNYTSNQLAKSMAILKHMPDILEHSSMLKPRFDSVK 287

Query: 179 -LIKVMLDLTKCIVEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVACHSQILSLA 237
            LI VML + KCIVEF++LP QYI+ D  A+S AMA  P + YWT RSIVAC SQ++ L 
Sbjct: 288 NLITVMLAIAKCIVEFQELPPQYITMDVPALSAAMAHLPISVYWTIRSIVACASQVIGLI 347

Query: 238 GLRDEYTASNTDAWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETI 297
           GL  E+ AS T+AWEL+SLAH++S +  H +  + +CY+ IDE + +E Y NL+RL E  
Sbjct: 348 GLGHEHVASTTEAWELSSLAHKLSNMQSHLQNQLGLCYKHIDERKHMEIYQNLIRLFEMA 407

Query: 298 HMDNMKVLRALIYAKDDIQPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDEEILVL-HL 356
           H+DNM+VL+ALIY+KDDIQP+++G+++ RVNI+VLRRK+VLLLIS LD++ +EI +L  +
Sbjct: 408 HIDNMRVLKALIYSKDDIQPLLEGTTKRRVNIDVLRRKNVLLLISDLDITQDEISILEQI 467

Query: 357 YRE---HKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVV 413
           Y E   H +R+E  Y IVWLPI+D+++ +++   +KFE LQ++M WY++ HP++I+ AV+
Sbjct: 468 YNESRLHPSRQESQYEIVWLPILDQAVPFNDNMLKKFEALQSVMTWYSIHHPSLIDRAVI 527

Query: 414 KYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLE 473
           K+ KE W F KK ILV +DPQGR+   NA HM+WIWG+LAFPF+  +E ALWK ESWRLE
Sbjct: 528 KFVKEKWNFGKKPILVVLDPQGRVACPNAVHMMWIWGSLAFPFTTIREEALWKEESWRLE 587

Query: 474 LLIDDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAK 533
           LL+D ID  I  W++E RYICLYGG D+EWIR+FT++A+AVA+AA I LGM YVGK+N K
Sbjct: 588 LLVDGIDPIITNWIEEGRYICLYGGEDMEWIRKFTSTARAVAQAAGIPLGMVYVGKSNPK 647

Query: 534 ERFRKISRIVIQENLSHTLTDPTEVWFFWARLESMLYSKLQHGATVEDDHIMQEVMTILS 593
           ER R+    ++ E LSH   D T +W+FW R+ESM  SK Q G T E+D +M+E+M +LS
Sbjct: 648 ERVRRNIATIMVEKLSHYWQDLTSIWYFWVRIESMWRSKNQLGKTSENDSLMKEIMAMLS 707

Query: 594 FDGSEQGWAIFWRGTHEMARAKGEMAVDCMMEFEKWKDDADQMGFVAGLNNYLQRVHTPR 653
           FD SE GWAIF  GT E+ +AKG + + C+ E+  WKD   Q GF+  L +YL+ +HT  
Sbjct: 708 FDSSEGGWAIFTGGTDEIVKAKGSIFLTCLSEYTSWKDQIQQKGFLPSLKDYLKGLHTDH 767

Query: 654 HCNRLILPDIHGPIPERLACAECGRTMEMFFMYRCCPE 691
           HCNRLILP   G IPER+ C++C R ME + MY+CC E
Sbjct: 768 HCNRLILPGSAGTIPERIVCSDCSRNMERYIMYKCCDE 805

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147821880|emb|CAN65891.1| hypothetical protein VITISV_041167 [Vitis vinifera]

 Score =  797 bits (2058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/691 (54%), Positives = 508/691 (73%), Gaps = 21/691 (3%)

Query: 6   ARSKGRMLSATDDSAMMKQVQASHAPDGREVDVRPILSIIEDIFRRATPSTIDGV--GTR 63
            R   + L  +DD+ MMKQ+QA+H PDGREV+V+PI+ +IEDI   ATP+ IDG   G  
Sbjct: 19  GRDHXKFLRMSDDTTMMKQIQATHTPDGREVEVKPIVQVIEDILNHATPA-IDGTLYGNP 77

Query: 64  EHVDALDNNASPAALSGMLDALSCDIRKISCEISCKCSGGEEAHATTMDLFNILSVYSWD 123
            H++AL++ +S   L G+L+ L+  I+K+SC    KCSGG +AHATTM +FN+LS YSWD
Sbjct: 78  XHLEALEDRSSQDGLXGILEELAYTIQKLSC----KCSGGGDAHATTMAVFNMLSHYSWD 133

Query: 124 AKMVLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNALKPQLDA---LI 180
           AK+ LSLAAFA NYG+FWL  QL   N LAKS+A+LKQLP+++EH N+LK + DA   LI
Sbjct: 134 AKVXLSLAAFAANYGEFWLVIQLYATNPLAKSVALLKQLPDIIEHGNSLKSRFDAVTKLI 193

Query: 181 KVMLDLTKCIVEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVACHSQILSLAGLR 240
            VMLD+TK I+EFK+LPS YIS D   MS+ MA  P AAYWT R IVAC SQI+SL G  
Sbjct: 194 XVMLDVTKSIIEFKELPSLYISPDMPPMSSXMAHIPTAAYWTIRGIVACASQIISLIGTS 253

Query: 241 DEYTASNTDAWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETIHMD 300
           +EYT+  T++WEL++LAH+VS I EH  + + JC+Q I+E +Q E+Y+NLVR+ E  H+D
Sbjct: 254 NEYTSWTTESWELSTLAHKVSSIHEHLIQQLIJCHQHIEEKKQFESYNNLVRIFEMPHLD 313

Query: 301 NMKVLRALIYAKDDIQPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDEEILVLHLYREH 360
           N KVL+ LIYAK+DIQP++ G+++ RVNIE+LRRK VLLLIS LDL  EEI++LH +   
Sbjct: 314 NQKVLKTLIYAKEDIQPLLQGNTKARVNIEILRRKTVLLLISDLDLLHEEIVILHKFYRE 373

Query: 361 KAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVKYAKEVW 420
           + + + +Y +VWLP+VDRS   +E  + KF +LQ  MPWYT+ HP+++EPAVV+Y KEVW
Sbjct: 374 QIKSDVEYEVVWLPVVDRSKPLNEENQNKFHELQKEMPWYTLLHPSLLEPAVVRYIKEVW 433

Query: 421 KFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDID 480
            F+KKAILV +D QG+++ +NA HM+WIWGN A+PF+  KE +LWK E+WRL+LL++   
Sbjct: 434 HFTKKAILVVLDLQGKVVCRNALHMMWIWGNTAYPFTNSKEESLWKEETWRLKLLVN--- 490

Query: 481 ATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFRKIS 540
                   + +YIC+YGG + +WI  F T+A+ VA+AA I L M YVGK+NAKE+ RK  
Sbjct: 491 --------QGKYICMYGGVNSDWILNFNTAAREVAKAAGIQLEMVYVGKSNAKEQVRKTI 542

Query: 541 RIVIQENLSHTLTDPTEVWFFWARLESMLYSKLQHGATVEDDHIMQEVMTILSFDGSEQG 600
             +   +L +  TDPT +WFFW R+ESMLYSK QHG T+E+D I   V+T+LSFDGS+QG
Sbjct: 543 TFIDSRSLGYCWTDPTNIWFFWTRMESMLYSKTQHGKTIENDSIFAGVLTMLSFDGSDQG 602

Query: 601 WAIFWRGTHEMARAKGEMAVDCMMEFEKWKDDADQMGFVAGLNNYLQRVHTPRHCNRLIL 660
           W++   G  EMA+AKG+M + C  E+  W D+  Q GF+  LN +LQ++HTP HCNRLIL
Sbjct: 603 WSVICHGPTEMAKAKGDMILKCFTEYSDWSDNVQQNGFMPALNEHLQKLHTPEHCNRLIL 662

Query: 661 PDIHGPIPERLACAECGRTMEMFFMYRCCPE 691
           P I+G IPE++ CAECGR ME +FMYRCC +
Sbjct: 663 PGINGDIPEKVVCAECGRPMEKYFMYRCCTD 693

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	691
TAIR|locus:2084158	740	SEOR1 "Sieve-Element-Occlusion	0.965	0.901	0.384	5.4e-134
TAIR|locus:2084143	822	SEOa "sieve element occlusion	0.952	0.800	0.355	1.5e-108
TAIR|locus:2008590	576	AT1G67790 "AT1G67790" [Arabido	0.438	0.526	0.289	9.4e-58

TAIR|locus:2084158 SEOR1 "Sieve-Element-Occlusion-Related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1313 (467.3 bits), Expect = 5.4e-134, P = 5.4e-134
 Identities = 269/699 (38%), Positives = 409/699 (58%)

Query:    15 ATDDSAMMKQVQASHAPDGREVDVRPILSIIEDIFRRATPSTIDGVGTREHVDAL--DNN 72
             ++D+S M+K +Q +H+PD REV VR +LS++EDI  RAT   +D   T   +  L  ++ 
Sbjct:    37 SSDESMMLKLIQQTHSPDAREVQVRGLLSLVEDILDRAT---LDSEDTNASMLPLPTEDK 93

Query:    73 ASPAALSGMLDALSCDIRKISCEISCKCSGGEEAHATTMDLFNILSVYSWDAKMVLSLAA 132
                +++  +LD++S  I +++CEI+ K   G ++H  TM +F  LS + WD K+VL+LAA
Sbjct:    94 LMQSSMMSVLDSVSYAIDRVACEIAYKSLTGSDSHEITMSVFEHLSSFQWDGKLVLTLAA 153

Query:   133 FALNYGQFWLSAQLCNKNSLAKSMAVLKQLP--NVLEHYNALKPQLDALIKVMLDLTKCI 190
             FALNYG+FWL  Q  +KN LAKS+A+LK +P  N +    ++   L+ LI+ M  +T C+
Sbjct:   154 FALNYGEFWLLVQFYSKNQLAKSLAMLKLVPVQNRVT-LESVSQGLNDLIREMKSVTACV 212

Query:   191 VEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVACHSQILSLAGLRDEYTASNTDA 250
             VE  +LP +YI+ D   +S  ++  P A YWT RS++AC SQI  +  +  E   +  D 
Sbjct:   213 VELSELPDRYITPDVPQLSRILSTIPIAVYWTIRSVIACISQINMITAMGHEMMNTQMDL 272

Query:   251 WELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETIHMDNMKVLRALIY 310
             WE + LA+++  I +H  + + +CY+ I++ R  E+   L  L +T H+DNMK+L AL++
Sbjct:   273 WETSMLANKLKNIHDHLAETLRLCYRHIEKQRSSESLKVLHSLFDTTHIDNMKILTALVH 332

Query:   311 AKDDIQPVVDGSSRTRVNIEVLRRKHXXXXXXXXXXXXXXXXXXH-LYREHK-------A 362
              K  I P+ DG ++ +V+++VLRRK                     +Y E +        
Sbjct:   333 PKPHITPLQDGLTKRKVHLDVLRRKTVLLLISDLNILQDELSIFEQIYTESRRNLVGVDG 392

Query:   363 REEFDYAIVWLPIVDRSIAWDEG--YRQKFEQLQAMMPWYTVQHPTIIEPAVVKYAKEVW 420
             +    Y +VW+P+VD    ++     ++KFE L+  MPWY+V  P +IE  VV++ +  W
Sbjct:   393 KSHMPYEVVWVPVVDPIEDFERSPILQKKFEDLRDPMPWYSVDSPKLIERHVVEFMRGRW 452

Query:   421 KFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDID 480
              F  K ILV +DPQG   + NA HM+WIWG  AFPF+  +E  LW+ E++ L L++D ID
Sbjct:   453 HFMNKPILVVIDPQGNEASLNALHMIWIWGTEAFPFTRSREEELWRRETFSLNLIVDGID 512

Query:   481 ATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNA--KERFRK 538
             + I  W+K + YI LYGG D++WIRRFT +AKA A+ + +NL MAYVGK N   +E+ R+
Sbjct:   513 SVIFNWIKPDNYIFLYGGDDLDWIRRFTMAAKATAKDSNVNLEMAYVGKRNHSHREQIRR 572

Query:   539 ISRIVIQENLSHTLTDPTEVWFFWARLESMLYSKLQHGATVEDDHIMQEVMTILSFDGSE 598
             IS ++  ENLSH+  +P  +WFFW RLESMLYSK+Q G   + D +MQ +  ILS+D   
Sbjct:   573 ISEVIRSENLSHSWAEPALMWFFWTRLESMLYSKIQLGKADDHDDVMQGIKKILSYD-KL 631

Query:   599 QGWAIFWRGTHEMARAKGEMAVDCMMEFEKWKDDADQMGFVAGLNNYLQ-RV--HTPRHC 655
              GWA+  +G   +  A G +     +    WK      G+   ++++    V   T + C
Sbjct:   632 GGWALLSKGPEIVMIAHGAIERTMSVYDRTWKTHVPTKGYTKAMSDHHHDEVLRETGKPC 691

Query:   656 NRLILPDIH-----GPIPERLACAECGRTMEMFFMYRCC 689
                   D H     G IPE++ C EC R ME +  + CC
Sbjct:   692 GHF---DFHITARSGRIPEKMNCFECQRPMEKYMSFSCC 727

GO:0005634 "nucleus" evidence=ISM

GO:0043621 "protein self-association" evidence=IPI

TAIR|locus:2084143 SEOa "sieve element occlusion a" [Arabidopsis thaliana (taxid:3702)]

 Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
 Identities = 255/717 (35%), Positives = 372/717 (51%)

Query:    10 GR-MLSATDDSAMMKQVQASHAPDGREVDVRPILSIIEDIFRRATPSTIDGVGTREHVDA 68
             GR M S +DD  M  +V  +H+PD    DV  +LS++ DIF+   PS ID    +  +  
Sbjct:   130 GRPMFSLSDDRVMADRVLKTHSPDMIFFDVTSLLSVVNDIFKSHVPS-IDSSAPKPSL-V 187

Query:    69 LDNNASPAALSGMLDALSCDIRKISCEISCKCSGGEEAHA-------------TTMDLFN 115
               + A   +     D +     +ISCEI CKC  G E+H              TT  + +
Sbjct:   188 FKDYADHTSFETFADLID----QISCEIDCKCLHGGESHGMMTSGLHLDSRNTTTFSVLS 243

Query:   116 ILSVYSWDAKMVLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNALKPQ 175
             ++S Y WDAK+VL L+A A+ YG F L A+    N L KS+A++KQLP++    NAL  +
Sbjct:   244 LVSKYRWDAKLVLVLSALAVKYGVFLLLAETHATNQLTKSLALIKQLPSIFSRQNALHQR 303

Query:   176 LDA---LIKVMLDLTKCIVEFKQLPSQYISTDAQAMSTAMAD-TPAAAYWTFRSIVACHS 231
             LD    L++ M+DLT  I++  QLP  +I+        A  D  P A YW  R ++ C S
Sbjct:   304 LDKTRILMQDMVDLTTTIIDIYQLPPNHITA-------AFTDHIPTAVYWIVRCVLICVS 356

Query:   232 QILSLAGLRDEYTASNTDAWELASLAHRVSRI----LEHFKKLIAICYQQIDENRQIEAY 287
              I   +G + +   S  +  E+   + R+ +I    LE FKK        I+E    E Y
Sbjct:   357 HISGASGFKQDQIMSFMEVSEIHENSERLRKINAYLLEQFKK----SKMTIEEGIIEEEY 412

Query:   288 HNLVRLLETI-HMDNMKVLRALIYAKDDIQPVVDGSSRTRVNIEVLRRKHXXXXXXXXXX 346
               L++   TI H+D +  L  L+   D +     G S+ RV I VL +KH          
Sbjct:   413 QELIQTFTTIIHVDVVPPLLRLLRPIDFLYHGA-GVSKRRVGINVLTQKHVLLLISDLEN 471

Query:   347 XXXXXXXXH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHP 405
                       LY E  A ++  + I+W+P+ D    W E    KFE L   M WY +  P
Sbjct:   472 IEKELYILESLYTE--AWQQ-SFEILWVPVQD---FWTEADDAKFEALHMNMRWYVLGEP 525

Query:   406 TIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALW 465
               +  A +++ +E W F  + ILV +DP+G++++ NAF M+WIW   A PF+  +E  LW
Sbjct:   526 RKLRRAAIRFVREWWGFKNRPILVALDPKGQVMSTNAFPMVWIWQPFAHPFTTARERDLW 585

Query:   466 KAESWRLELLIDDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMA 525
               + W LE LID  D   L  + + +YICLYGG D++WI+ FT+  + VA+AA I L M 
Sbjct:   586 SEQEWNLEFLIDGTDPHSLNQLVDGKYICLYGGEDMQWIKNFTSLWRNVAKAANIQLEMV 645

Query:   526 YVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARLESMLYSKLQ----HGAT--- 578
             YVGK N K   + I   + +ENLSHTL D  ++WFFW R+ESM  SK +    HG     
Sbjct:   646 YVGKRNPKNGIQPIINTIREENLSHTLPDLFQIWFFWTRVESMWESKQRMLKAHGIKGRE 705

Query:   579 ----VEDDHIMQEVMTILSFDGSEQGWAIFWRGTHEMARAKGEMAVDCMMEFEKWKDDAD 634
                  E D ++QEV+ +L + G   GW +  + +  M RAKG +    + EF +W+ +  
Sbjct:   706 GFKEEEKDLVLQEVVAMLGYGGEGDGWGLVSKASDMMVRAKGNLFSRGLAEFNEWEVNIP 765

Query:   635 QMGFVAGLNNYLQRVHTPRHCNRLILPDIHGPIPERLACAECGRTMEMFFMYRCCPE 691
               GF+  LN++L     P HC R +LP+  G IP  + C EC RTME +++Y+CC E
Sbjct:   766 TKGFLTALNDHLLMRLPPHHCTRFMLPETAGIIPNEVECTECRRTMEKYYLYQCCLE 822

GO:0009507 "chloroplast" evidence=ISM

GO:0043621 "protein self-association" evidence=IPI

TAIR|locus:2008590 AT1G67790 "AT1G67790" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 9.4e-58, Sum P(2) = 9.4e-58
 Identities = 95/328 (28%), Positives = 156/328 (47%)

Query:   365 EFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVKYAKEVWKFS- 423
             E +Y I+W+PI   S  W +  ++ F+     +PW +V+ P ++   ++ + K+ W +  
Sbjct:   269 EQNYEIIWVPIPS-SQKWTDEEKEIFDFYSNSLPWISVRQPWLMSSTILNFFKQEWHYKD 327

Query:   424 KKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDIDATI 483
              +A+LV +D  GR +N NA  M+ IWG  A+PFS  +E  LWK   W + LL+D I  T 
Sbjct:   328 NEAMLVVIDSNGRFVNMNAMDMVLIWGVKAYPFSVSREDELWKEHGWSINLLLDGIHPTF 387

Query:   484 LEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFRKISRIV 543
                  E R IC++G  +++WI  F + A+ +       L + Y+      ER        
Sbjct:   388 -----EGREICIFGSENLDWIDEFVSLARKIQNLG-FQLELIYLSNQRRDER-------A 434

Query:   544 IQENLSHTLTDPTEVWFFWARLESMLYSKLQHGATVED---DHIMQEVMTILSFD-GSEQ 599
             ++E  S  L  PT    FW RLES+  SKL+    +E    D + +EV  +L FD G  +
Sbjct:   435 MEE--SSILFSPTLQQLFWLRLESIERSKLKR-IVIEPSKPDRVFEEVRNLLDFDYGKHR 491

Query:   600 GWAIFWRGTHEMARAKGEMAVDCMMEFEKWKDDADQMGFVAGLNNYLQRVHTPRHCNRLI 659
             GW I   G+       GE   + M +  +W + A  +GF   +    ++     H    +
Sbjct:   492 GWGIIGNGS-TAETVDGEKMTERMRKIVRWGEYAKGLGFTEAIEIAAEKPCELSHT--AV 548

Query:   660 LPDIHGPIPERLACAECGRTMEMFFMYR 687
             +P       + + C +C   M+ F  Y+
Sbjct:   549 VPFEEALTMKVVTCEKCKWPMKRFVAYQ 576

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015934001 SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (708 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	691
PF14576	286	SEO_N: Sieve element occlusion N-terminus	100.0
PF14577	235	SEO_C: Sieve element occlusion C-terminus	100.0
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	99.91
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.82
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.76
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.76
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.48
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	98.61
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.56
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.51
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.46
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	98.33
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	98.32
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.25
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	98.22
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	98.2
PTZ00256	183	glutathione peroxidase; Provisional	98.1
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.1
PLN02412	167	probable glutathione peroxidase	98.06
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.04
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	98.04
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.03
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.0
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	97.98
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	97.95
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.93
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	97.93
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	97.92
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	97.92
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	97.9
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	97.83
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	97.81
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	97.81
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	97.81
PTZ00056	199	glutathione peroxidase; Provisional	97.76
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	97.75
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	97.62
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	97.61
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	97.59
PTZ00253	199	tryparedoxin peroxidase; Provisional	97.52
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	97.46
PRK13190	202	putative peroxiredoxin; Provisional	97.44
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	97.42
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	97.31
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	97.2
PTZ00137	261	2-Cys peroxiredoxin; Provisional	97.17
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	97.13
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	97.08
PRK15000	200	peroxidase; Provisional	97.05
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	97.04
PRK13728	181	conjugal transfer protein TrbB; Provisional	97.02
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	96.95
PRK13599	215	putative peroxiredoxin; Provisional	96.88
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	96.84
PRK10606	183	btuE putative glutathione peroxidase; Provisional	96.81
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	96.78
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	96.64
PRK13191	215	putative peroxiredoxin; Provisional	96.63
PRK13189	222	peroxiredoxin; Provisional	96.62
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	96.39
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	96.05
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	95.78
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	95.74
PRK10996	139	thioredoxin 2; Provisional	95.53
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	95.49
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	95.42
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	95.27
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	95.25
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	95.24
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	95.24
PTZ00051	98	thioredoxin; Provisional	95.23
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	95.14
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	95.01
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	94.59
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	94.52
PHA02278	103	thioredoxin-like protein	94.5
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	94.46
PRK09381	109	trxA thioredoxin; Provisional	94.45
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	94.35
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	94.35
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	94.34
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	94.31
PTZ00062	204	glutaredoxin; Provisional	94.27
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	93.94
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	93.91
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	93.89
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	93.59
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	93.53
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	93.41
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	93.38
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	92.71
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	92.45
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	92.38
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	91.98
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	91.89
cd02947	93	TRX_family TRX family; composed of two groups: Gro	91.51
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	91.28
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	91.26
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	90.51
PTZ00102	477	disulphide isomerase; Provisional	90.44
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	89.8
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	89.77
smart00594	122	UAS UAS domain.	89.76
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	89.26
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	88.39
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	87.95
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	87.64
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	87.52
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	87.35
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	86.69
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	86.41
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	86.17
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	86.06
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	86.02
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	85.82
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	85.31
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	84.07
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	83.04
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	82.61
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	82.36
KOG0852	196	consensus Alkyl hydroperoxide reductase, thiol spe	82.26
PTZ00102	477	disulphide isomerase; Provisional	80.89

>PF14576 SEO_N: Sieve element occlusion N-terminus

Probab=100.00  E-value=5.6e-108  Score=845.86  Aligned_cols=281  Identities=55%  Similarity=0.945  Sum_probs=269.4

Q ss_pred             cCcchHHHHHHhhhcCCCCCccChHHhHHHHHHHHhhcccccccC--CCccccccccccCCCccccccccchhhhhhhhh
Q 044391           15 ATDDSAMMKQVQASHAPDGREVDVRPILSIIEDIFRRATPSTIDG--VGTREHVDALDNNASPAALSGMLDALSCDIRKI   92 (691)
Q Consensus        15 ~sdd~i~~~~I~~TH~~d~~~~Dv~~L~~~ve~Il~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~le~~~~~i~~I   92 (691)
                      +|||++||||||+||+||||+|||+|||++||||++||+++..+.  ...+.+.++++++..++++.+++||++|+||||
T Consensus         1 ~~~D~~ilk~I~~TH~pd~~~~Dv~~Ll~~venIl~~at~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~l~~~i~rI   80 (286)
T PF14576_consen    1 TSDDDQILKQIYATHVPDGRKFDVEPLLHLVENILKRATPIVGDSIDTVVQKHPEALEDKDYQIEPIASFEPLFYTIKRI   80 (286)
T ss_pred             CCcHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHhhhhhcchhhhhhhcchhhhhhhhcccchHhhcCchhHHHHHH
Confidence            478888899999999999999999999999999999998874332  445666677778888889999999999999999


Q ss_pred             hheeecccCCCchhhhHHHHHHHhhccCcchhHHHHHHHHHHHhhcchhhhcccCCCCHHHHHHHHHhCCchhhhhhccc
Q 044391           93 SCEISCKCSGGEEAHATTMDLFNILSVYSWDAKMVLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNAL  172 (691)
Q Consensus        93 scem~ck~~g~~~aH~TTm~Il~~Ls~YsWDAK~vLtLAAFAl~YGeFwlL~q~~~~n~LakSlA~Lkqlp~i~~~~~~l  172 (691)
                      ||||+|||+||+|||+|||+|||+||+|||||||||||||||+||||||||+|+|++||||||||+|||||+|++|...+
T Consensus        81 Scem~ck~~g~~~aH~TTm~Il~~Ls~YsWDAK~VLtLAAFAl~YGeFwlLaq~~~~n~LakSlA~LkqlP~i~~~~~~l  160 (286)
T PF14576_consen   81 SCEMSCKCSGEEDAHQTTMSILNMLSSYSWDAKAVLTLAAFALEYGEFWLLAQIYPTNPLAKSLAILKQLPDILEHSDSL  160 (286)
T ss_pred             HHHheecCCCCchHhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhHHHHhhhcccCHHHHHHHHHhcchhhhhhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHH---HHHHHHHHhhhhhhcccCCccccccccchHHHHHhhchhHHHHHHHHHHHHhhhhccccccccccccccch
Q 044391          173 KPQLDA---LIKVMLDLTKCIVEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVACHSQILSLAGLRDEYTASNTD  249 (691)
Q Consensus       173 k~~~~~---Lvk~m~dV~~cIie~~~L~~~y~~~dvpal~~a~~~IP~~vYWtI~siVac~~qi~~l~~~~~e~~~s~~~  249 (691)
                      ||||++   |||+||||++||+||++||++||++|||+|++|++|||+||||||||+|||++||++||++||| +.++++
T Consensus       161 k~r~~~ln~LVk~mldV~~cIief~~L~~~y~~~Dvpal~~a~~~IPvavYWtI~siVAc~sqI~~lt~~~~e-~~~~~~  239 (286)
T PF14576_consen  161 KPRFDALNNLVKAMLDVTKCIIEFEELPSQYITKDVPALSTALAHIPVAVYWTIRSIVACASQITGLTGMGHE-ITSTTE  239 (286)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHcChhhccccchhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcccc-cccchh
Confidence            999998   9999999999999999999999999999999999999999999999999999999999999999 899999


Q ss_pred             hhHHhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccc
Q 044391          250 AWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETIHM  299 (691)
Q Consensus       250 ~~eLS~l~~Kl~~i~~~L~~~l~~c~~~I~e~~~~e~y~~l~~lf~t~~~  299 (691)
                      +||||+|+|||++|++|||+||++|++|||+   +|+|++|+++|++||+
T Consensus       240 ~~eLS~l~~KL~~I~~~Lk~qL~~C~~~I~~---~E~y~~l~~lf~t~~~  286 (286)
T PF14576_consen  240 AWELSSLAHKLSNILSHLKKQLDLCRQQIEE---IEDYQMLLKLFETPHI  286 (286)
T ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999999999   9999999999999984

>PF14577 SEO_C: Sieve element occlusion C-terminus

Probab=100.00  E-value=2e-97  Score=748.40  Aligned_cols=234  Identities=52%  Similarity=1.034  Sum_probs=231.4

Q ss_pred             hhhHHHHHhhhccchhhhcccCchhhhhhhcCCcEEEEEccCChhHHHHHHHHHHHHHHHhCCceeeEEecccChHHHHh
Q 044391          458 AEKEAALWKAESWRLELLIDDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFR  537 (691)
Q Consensus       458 ~~r~e~L~~~e~w~lelLvd~id~~I~~~i~egK~I~LYgG~D~~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkdn~~e~v~  537 (691)
                      ++|+|+||++|+|+|++|+|||||.|.+||++|||||||||+|++|||+||.++++||++|+++|||+||||+||||+||
T Consensus         1 ~sree~Lw~e~~W~l~lL~d~Idp~i~~wi~e~kyI~iYGG~D~eWIq~Ft~~a~~va~~a~i~LEm~yvGKsn~~e~v~   80 (235)
T PF14577_consen    1 KSREESLWKEETWFLELLVDGIDPTILNWIKEGKYIFIYGGEDMEWIQEFTKAARKVAKAADIQLEMVYVGKSNPREQVR   80 (235)
T ss_pred             CchHHHhhhhhhHHHHHHHcccCHhHHHHhhCCcEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCChHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhccccccCCCCcchhHHHHHHHHhHHHhhhcCCCCCCchhHHHHHHHhccCCCCCcEEEEecccchhhccchh
Q 044391          538 KISRIVIQENLSHTLTDPTEVWFFWARLESMLYSKLQHGATVEDDHIMQEVMTILSFDGSEQGWAIFWRGTHEMARAKGE  617 (691)
Q Consensus       538 ~~~~~i~~e~ls~~~~d~t~v~~FW~rlESm~~sK~q~g~~~~~D~i~qei~~lLs~d~~~~GWavlskGs~~~~~ghG~  617 (691)
                      +++++|+.|||||+|+|||+|||||+||||||+||+|+|+++++|+|||||++||||||+++|||||||||+++++|||+
T Consensus        81 ~~~~~i~~e~ls~~~~d~t~v~~FW~rlESm~~SK~qlg~~~~~D~i~qEV~~LLs~d~~~~GWavlskGs~v~~~ghG~  160 (235)
T PF14577_consen   81 KIIATITSEKLSHSWEDPTMVWFFWTRLESMLFSKIQLGKTDENDPIMQEVKKLLSYDQDEQGWAVLSKGSNVMVKGHGE  160 (235)
T ss_pred             HHhhhhhhcccccccCCcchhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHhCCCCCCCceEEEecCCceeeecccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhcccccccccchHHHHHHhhhccC-CCCCCcccccCCCCCCCCceeecCCCCcccceeeeeccCCC
Q 044391          618 MAVDCMMEFEKWKDDADQMGFVAGLNNYLQRVH-TPRHCNRLILPDIHGPIPERLACAECGRTMEMFFMYRCCPE  691 (691)
Q Consensus       618 ~~~~tl~~f~~Wk~~v~~kGF~~Af~~y~~~~~-~~~~C~~~~~p~~~g~ip~~i~CpeC~R~ME~~v~YkCCh~  691 (691)
                      +|++||++|+.||++|+++||++||+|||++++ +||||||+++|+++|+||++|+|||||||||+||+||||||
T Consensus       161 ~~l~tl~~f~~Wk~~v~~~GF~~Af~e~~~~~~~~~~~C~~~~~p~~~g~ipe~i~CpeC~R~MEk~v~YkCChd  235 (235)
T PF14577_consen  161 TMLQTLAEFDEWKENVPEKGFDPAFKEYYEKLHDTPHHCNRLEFPNSAGRIPETIVCPECGRPMEKFVMYKCCHD  235 (235)
T ss_pred             cHHHHHHHhhHhhccCcccCHHHHHHHHHhccCCCCCCCeeEeccCcccCCCceeECCCCCCchhhceeeeccCC
Confidence            999999999999999999999999999999988 59999999999999999999999999999999999999997

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=99.91  E-value=2.9e-24  Score=206.68  Aligned_cols=132  Identities=17%  Similarity=0.224  Sum_probs=118.1

Q ss_pred             ceecCCCCceeecc-eecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH
Q 044391          317 PVVDGSSRTRVNIE-VLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ  392 (691)
Q Consensus       317 ~l~~g~~~~kV~Is-~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~  392 (691)
                      ..+.+.++..|.++ .|+||.|+|||||+||+||  ++++|+ .|++++++ +..|||||||.        |+++++|++
T Consensus        15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~-~~~fEVvfVS~--------D~~~~~~~~   85 (157)
T KOG2501|consen   15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDN-AAPFEVVFVSS--------DRDEESLDE   85 (157)
T ss_pred             CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhc-CCceEEEEEec--------CCCHHHHHH
Confidence            44566778889998 6999999999999999886  558999 99999987 77999999984        899999999


Q ss_pred             HhcC--CCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCcccccCChhhHHHHHhhh
Q 044391          393 LQAM--MPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAE  468 (691)
Q Consensus       393 ~~~~--MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~e~L~~~e  468 (691)
                      ++..  |||++|||.|    +.++.+.+.|.+++||.|++++|+|.++..||+.+|..+|.       .+-.+++.+|
T Consensus        86 y~~~~~~~W~~iPf~d----~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~-------~~~~a~~~ew  152 (157)
T KOG2501|consen   86 YMLEHHGDWLAIPFGD----DLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS-------ADPKALVDEW  152 (157)
T ss_pred             HHHhcCCCeEEecCCC----HHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc-------cCHHHHHHHH
Confidence            9985  9999999998    78999999999999999999999999999999999999998       5666777663

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.82  E-value=7.5e-20  Score=167.33  Aligned_cols=123  Identities=21%  Similarity=0.346  Sum_probs=109.9

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCC
Q 044391          322 SSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMP  398 (691)
Q Consensus       322 ~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MP  398 (691)
                      .+|+.|++++++||.|+|+|.+.||++|.  .+.|. +|++++.+ +.+++||+|++        |.+++.|.++.+.+|
T Consensus         6 ~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~-~~~~~vv~is~--------d~~~~~~~~~~~~~~   76 (131)
T cd03009           6 NDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKES-GKNFEIVFISW--------DRDEESFNDYFSKMP   76 (131)
T ss_pred             cCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhc-CCCEEEEEEEC--------CCCHHHHHHHHHcCC
Confidence            46678999999999999999999998874  57899 99999865 56899999997        556689999999999


Q ss_pred             eeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCcccccC
Q 044391          399 WYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPF  456 (691)
Q Consensus       399 WyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPF  456 (691)
                      |+.+||++   ....+.+.+.|++.++|+++++|++|+++..||++|+..||.+||||
T Consensus        77 ~~~~~~~~---~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~  131 (131)
T cd03009          77 WLAVPFSD---RERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF  131 (131)
T ss_pred             eeEcccCC---HHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence            99999975   34556888899999999999999999999999999999999999998

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.76  E-value=2.5e-18  Score=164.48  Aligned_cols=121  Identities=17%  Similarity=0.277  Sum_probs=104.5

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhcc----CCCCeeEEEEecccCCCCCChhhHHHHHHHh
Q 044391          322 SSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAR----EEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ  394 (691)
Q Consensus       322 ~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~----~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~  394 (691)
                      .+-.+++++.|+||.|+|+|.|.||++|  +++.|. +|++++++    .+.+||||.|+.        |++++.+..+.
T Consensus        13 ~~~~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~--------D~~~~~~~~f~   84 (146)
T cd03008          13 LDTEREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSM--------DQSEQQQESFL   84 (146)
T ss_pred             hhcccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEEC--------CCCHHHHHHHH
Confidence            3445678899999999999999999886  568899 99999854    245799999995        55667799999


Q ss_pred             cCCC--eeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCcccc
Q 044391          395 AMMP--WYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAF  454 (691)
Q Consensus       395 ~~MP--WyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AF  454 (691)
                      +.|+  |+++|+.+    .....+.+.|++.++|++++|||+|+++..|++..|..+|.+||
T Consensus        85 ~~~~~~~~~~p~~~----~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~  142 (146)
T cd03008          85 KDMPKKWLFLPFED----EFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF  142 (146)
T ss_pred             HHCCCCceeecccc----hHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence            9998  99999986    23446778899999999999999999999999999999999987

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.76  E-value=7.5e-18  Score=155.34  Aligned_cols=126  Identities=23%  Similarity=0.324  Sum_probs=110.1

Q ss_pred             ceecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH
Q 044391          317 PVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL  393 (691)
Q Consensus       317 ~l~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~  393 (691)
                      +|+||+  +.|++++++||.|+|+|.+.||++|  +.+.|+ +|++++.+ +.+++||+|++        |++.+.++.+
T Consensus         2 ~~~~~~--~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~-~~~v~vi~Vs~--------d~~~~~~~~~   70 (132)
T cd02964           2 FLLDGE--GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEE-GKNFEIVFVSR--------DRSEESFNEY   70 (132)
T ss_pred             ccccCC--ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhc-CCCeEEEEEec--------CCCHHHHHHH
Confidence            578888  5799999999999999999999887  457799 99999754 35799999986        4556677888


Q ss_pred             hcCC-CeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHH-hCcccccC
Q 044391          394 QAMM-PWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWI-WGNLAFPF  456 (691)
Q Consensus       394 ~~~M-PWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~-wG~~AFPF  456 (691)
                      .+.+ +|+.+++.+   ......+.+.|++.++|+.+++|++|++++.|+..++.. ||+.||||
T Consensus        71 ~~~~~~~~~~~~~d---~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~  132 (132)
T cd02964          71 FSEMPPWLAVPFED---EELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW  132 (132)
T ss_pred             HhcCCCeEeeccCc---HHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence            8888 899999965   345678889999999999999999999999999999999 99999998

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.48  E-value=2.8e-13  Score=117.10  Aligned_cols=90  Identities=23%  Similarity=0.361  Sum_probs=77.8

Q ss_pred             CcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCC--CeeeecCCCCC
Q 044391          334 RKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMM--PWYTVQHPTII  408 (691)
Q Consensus       334 gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~M--PWyAVp~~d~i  408 (691)
                      ||.++|+|.+.||++|  +++.|. +|+++++  +.+++||+||+        |++++.++++.+.+  ||+.+|+.+  
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~--~~~v~~v~Vs~--------d~~~~~~~~~~~~~~~~~~~~~~~~--   68 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK--KDDVEFVFVSL--------DEDEEEWKKFLKKNNFPWYNVPFDD--   68 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TTTEEEEEEE---------SSSHHHHHHHHHTCTTSSEEEETTT--
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEe--------CCCHHHHHHHHHhcCCCceEEeeCc--
Confidence            8999999999999776  568899 9999985  68899999997        67788899988888  999999987  


Q ss_pred             chHHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391          409 EPAVVKYAKEVWKFSKKAILVPVDPQGRI  437 (691)
Q Consensus       409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv  437 (691)
                        .....+.+.|++.++|.+++|||+|++
T Consensus        69 --~~~~~l~~~~~i~~iP~~~lld~~G~I   95 (95)
T PF13905_consen   69 --DNNSELLKKYGINGIPTLVLLDPDGKI   95 (95)
T ss_dssp             --HHHHHHHHHTT-TSSSEEEEEETTSBE
T ss_pred             --chHHHHHHHCCCCcCCEEEEECCCCCC
Confidence              447788999999999999999999986

...

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=98.61  E-value=2.1e-07  Score=85.64  Aligned_cols=111  Identities=16%  Similarity=0.256  Sum_probs=79.0

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCCh-h--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCC-hhhHHHHHHHhc
Q 044391          321 GSSRTRVNIEVLRRKHVLLLISSLDLSD-E--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWD-EGYRQKFEQLQA  395 (691)
Q Consensus       321 g~~~~kV~Is~L~gK~VlL~fSal~~~~-~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~-D~d~~~F~~~~~  395 (691)
                      ..+++.++++.++||.++|+|.+.||++ |  ++..|. +|++++++..+++++|+|++ |.  ..+ .+..++|-+-..
T Consensus         9 ~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~-d~--~~d~~~~~~~~~~~~~   85 (142)
T cd02968           9 DQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISV-DP--ERDTPEVLKAYAKAFG   85 (142)
T ss_pred             cCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEE-CC--CCCCHHHHHHHHHHhC
Confidence            3456679999999999999999999976 6  557799 99999765116799999997 31  001 122344433332


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCcCCc--------------eEEEEeCCCCceec
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKFSKK--------------AILVPVDPQGRILN  439 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~~i--------------P~LVvL~pqGkv~~  439 (691)
                       .+|..+..++    +..+.+.+.|++...              |..+|+||+|+++.
T Consensus        86 -~~~~~l~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~  138 (142)
T cd02968          86 -PGWIGLTGTP----EEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVR  138 (142)
T ss_pred             -CCcEEEECCH----HHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEE
Confidence             5788887754    345567777776544              57999999999975

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.56  E-value=5.7e-07  Score=82.37  Aligned_cols=104  Identities=13%  Similarity=0.055  Sum_probs=71.9

Q ss_pred             CceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc--CCC
Q 044391          324 RTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA--MMP  398 (691)
Q Consensus       324 ~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~--~MP  398 (691)
                      ++.|++++++||.|+|+|-+.||++|  +++.|+ +|++.+.   .+++||.|+.-+.+   .+++.+....+..  .++
T Consensus        13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~---~~~~vi~i~~~~~~---~~~~~~~~~~~~~~~~~~   86 (126)
T cd03012          13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD---DGLVVIGVHSPEFA---FERDLANVKSAVLRYGIT   86 (126)
T ss_pred             CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc---CCeEEEEeccCccc---cccCHHHHHHHHHHcCCC
Confidence            45699999999999999999999776  567799 9999873   46899988751110   1222333333222  344


Q ss_pred             eeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          399 WYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       399 WyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      |..+-     |.  ...+.+.|++.+.|..+++|++|+++..
T Consensus        87 ~p~~~-----D~--~~~~~~~~~v~~~P~~~vid~~G~v~~~  121 (126)
T cd03012          87 YPVAN-----DN--DYATWRAYGNQYWPALYLIDPTGNVRHV  121 (126)
T ss_pred             CCEEE-----CC--chHHHHHhCCCcCCeEEEECCCCcEEEE
Confidence            43322     22  2344566899999999999999999864

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.51  E-value=6.2e-07  Score=79.69  Aligned_cols=101  Identities=16%  Similarity=0.133  Sum_probs=67.8

Q ss_pred             CCCceeecceec-CcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCC
Q 044391          322 SSRTRVNIEVLR-RKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMM  397 (691)
Q Consensus       322 ~~~~kV~Is~L~-gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~M  397 (691)
                      .+|+.+.++.++ ||.|+|+|-+.||++|  +++.|. +|++.+    .++.|+-|+  |       .+.+..+.+.+.+
T Consensus         8 ~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~----~~~~vi~v~--~-------~~~~~~~~~~~~~   74 (114)
T cd02967           8 IDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEA----DWLDVVLAS--D-------GEKAEHQRFLKKH   74 (114)
T ss_pred             CCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhc----CCcEEEEEe--C-------CCHHHHHHHHHHh
Confidence            456689999998 9999999999999776  456788 877653    347777553  2       2233344433333


Q ss_pred             CeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceeccc
Q 044391          398 PWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQN  441 (691)
Q Consensus       398 PWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~N  441 (691)
                      +.-..|+  ..+.    .+.+.|++.+.|..+++|++|+++..+
T Consensus        75 ~~~~~p~--~~~~----~~~~~~~~~~~P~~~vid~~G~v~~~~  112 (114)
T cd02967          75 GLEAFPY--VLSA----ELGMAYQVSKLPYAVLLDEAGVIAAKG  112 (114)
T ss_pred             CCCCCcE--EecH----HHHhhcCCCCcCeEEEECCCCeEEecc
Confidence            3211221  1122    256779999999999999999998654

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.46  E-value=8.9e-07  Score=75.88  Aligned_cols=104  Identities=17%  Similarity=0.134  Sum_probs=71.9

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCC
Q 044391          322 SSRTRVNIEVLRRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMP  398 (691)
Q Consensus       322 ~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MP  398 (691)
                      .++..++.++++||.++|+|.+.||+.|..  ..|. +++++.   +.++.++.|++ |.   .+.+..+.|-+-+. -|
T Consensus         7 ~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~~~v~~-d~---~~~~~~~~~~~~~~-~~   78 (116)
T cd02966           7 LDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYK---DDGVEVVGVNV-DD---DDPAAVKAFLKKYG-IT   78 (116)
T ss_pred             CCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhC---CCCeEEEEEEC-CC---CCHHHHHHHHHHcC-CC
Confidence            455679999999999999999999987743  4566 777664   45688998876 31   12333333333222 34


Q ss_pred             eeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          399 WYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       399 WyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      |.-+.     +.  .+.+.+.|++.+.|.++++||+|+++..
T Consensus        79 ~~~~~-----~~--~~~~~~~~~~~~~P~~~l~d~~g~v~~~  113 (116)
T cd02966          79 FPVLL-----DP--DGELAKAYGVRGLPTTFLIDRDGRIRAR  113 (116)
T ss_pred             cceEE-----cC--cchHHHhcCcCccceEEEECCCCcEEEE
Confidence            43322     11  3456778999999999999999999854

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=98.33  E-value=4.4e-06  Score=77.68  Aligned_cols=103  Identities=13%  Similarity=0.115  Sum_probs=77.1

Q ss_pred             CCCceeecceecCcEEEEEEecC-CCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCC
Q 044391          322 SSRTRVNIEVLRRKHVLLLISSL-DLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMM  397 (691)
Q Consensus       322 ~~~~kV~Is~L~gK~VlL~fSal-~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~M  397 (691)
                      .+|+.++++.++||.|+|.|-+. |||+|  +++.|. +|++.+   +.++++|.|...+      +....+|-+- ...
T Consensus        16 ~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~---~~~v~~v~v~~~~------~~~~~~~~~~-~~~   85 (146)
T PF08534_consen   16 LDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYK---DKGVDVVGVSSDD------DPPVREFLKK-YGI   85 (146)
T ss_dssp             TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHH---TTTCEEEEEEESS------SHHHHHHHHH-TTT
T ss_pred             CCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhc---cCceEEEEecccC------CHHHHHHHHh-hCC
Confidence            77889999999999999999988 99887  457788 988876   4469999998743      3345556544 445


Q ss_pred             CeeeecCCCCCchHHHHHHHHhhCcC---------CceEEEEeCCCCceeccc
Q 044391          398 PWYTVQHPTIIEPAVVKYAKEVWKFS---------KKAILVPVDPQGRILNQN  441 (691)
Q Consensus       398 PWyAVp~~d~i~~~~~r~ike~f~~~---------~iP~LVvL~pqGkv~~~N  441 (691)
                      +|..+--++       ..+.+.|++.         +.|..+++|++|+++...
T Consensus        86 ~~~~~~D~~-------~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~  131 (146)
T PF08534_consen   86 NFPVLSDPD-------GALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH  131 (146)
T ss_dssp             TSEEEEETT-------SHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred             CceEEechH-------HHHHHHhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence            555533332       2345558988         999999999999998754

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=98.32  E-value=2.4e-06  Score=81.36  Aligned_cols=108  Identities=13%  Similarity=0.183  Sum_probs=75.9

Q ss_pred             ceecCCCCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH
Q 044391          317 PVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL  393 (691)
Q Consensus       317 ~l~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~  393 (691)
                      .-+...+|+.+++++++||.++|+|-+.||+.|.  .+.|. ++++++.   .++++|-|+.        |...+...++
T Consensus        44 ~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~---~~~~vi~i~~--------d~~~~~~~~~  112 (173)
T PRK03147         44 FVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE---KGVEIIAVNV--------DETELAVKNF  112 (173)
T ss_pred             cEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc---CCeEEEEEEc--------CCCHHHHHHH
Confidence            3444567778999999999999999999998774  46788 9988863   4688999876        2333344444


Q ss_pred             hcCCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          394 QAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       394 ~~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      ...++   ++|+-..+.  .+.+.+.|++.+.|..+++|++|+++..
T Consensus       113 ~~~~~---~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~~g~i~~~  154 (173)
T PRK03147        113 VNRYG---LTFPVAIDK--GRQVIDAYGVGPLPTTFLIDKDGKVVKV  154 (173)
T ss_pred             HHHhC---CCceEEECC--cchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence            33332   233321121  2355567999999999999999999854

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.25  E-value=8.2e-06  Score=73.09  Aligned_cols=104  Identities=19%  Similarity=0.240  Sum_probs=75.4

Q ss_pred             eecCCCCceeecceecCcEEEEEEecC-CCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH
Q 044391          318 VVDGSSRTRVNIEVLRRKHVLLLISSL-DLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL  393 (691)
Q Consensus       318 l~~g~~~~kV~Is~L~gK~VlL~fSal-~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~  393 (691)
                      -+...+++.+++++|+||.++|+|-+. ||+.|  ++.-|. .|++++.   .+..+|.|+. |     +.++.++|.+.
T Consensus         9 ~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~---~~~~vi~is~-d-----~~~~~~~~~~~   79 (124)
T PF00578_consen    9 TLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD---KGVQVIGIST-D-----DPEEIKQFLEE   79 (124)
T ss_dssp             EEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT---TTEEEEEEES-S-----SHHHHHHHHHH
T ss_pred             EeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhcc---ceEEeeeccc-c-----cccchhhhhhh
Confidence            344566788999999999999999888 99776  456688 9999983   4799999986 3     13344556554


Q ss_pred             hc-CCCeeeecCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceec
Q 044391          394 QA-MMPWYTVQHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILN  439 (691)
Q Consensus       394 ~~-~MPWyAVp~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~  439 (691)
                      .. .+|++.=  ++       ..+.+.|+..      ..|..+++||+|+++.
T Consensus        80 ~~~~~~~~~D--~~-------~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~  123 (124)
T PF00578_consen   80 YGLPFPVLSD--PD-------GELAKAFGIEDEKDTLALPAVFLIDPDGKIRY  123 (124)
T ss_dssp             HTCSSEEEEE--TT-------SHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred             hccccccccC--cc-------hHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence            43 4444333  22       2344558888      9999999999999874

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=98.22  E-value=5.7e-06  Score=94.13  Aligned_cols=108  Identities=10%  Similarity=0.013  Sum_probs=78.8

Q ss_pred             cCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCC-hhhHHHHHHHhc
Q 044391          320 DGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWD-EGYRQKFEQLQA  395 (691)
Q Consensus       320 ~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~-D~d~~~F~~~~~  395 (691)
                      ...+|..+.++  +||.|+|.|-|.||++|  +++.|. +|++.+   ..+++||-|.+ +   .++ +.+.+.|.++.+
T Consensus        44 ~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k---~~~v~VI~Vs~-~---~~~~e~~~~~~~~~~~  114 (521)
T PRK14018         44 ADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAK---FSSANLITVAS-P---GFLHEKKDGDFQKWYA  114 (521)
T ss_pred             ecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhc---cCCeEEEEEec-c---cccccccHHHHHHHHH
Confidence            33445567766  99999999999999887  568899 999876   34688888864 2   232 445677888887


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      .+.|..+|.--  |.  -..+.+.|+++++|++++||++|+++..
T Consensus       115 ~~~y~~~pV~~--D~--~~~lak~fgV~giPTt~IIDkdGkIV~~  155 (521)
T PRK14018        115 GLDYPKLPVLT--DN--GGTLAQSLNISVYPSWAIIGKDGDVQRI  155 (521)
T ss_pred             hCCCcccceec--cc--cHHHHHHcCCCCcCeEEEEcCCCeEEEE
Confidence            77665444321  22  2345677999999999999999999854

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=98.20  E-value=1.3e-05  Score=77.60  Aligned_cols=102  Identities=14%  Similarity=0.151  Sum_probs=73.6

Q ss_pred             CceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh-----
Q 044391          324 RTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ-----  394 (691)
Q Consensus       324 ~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~-----  394 (691)
                      +..+++++++||.|+|+|- +.||+.|  +++.|+ .|+++++   .++.||.|+. |.     ....+.|.+..     
T Consensus        19 ~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~---~~v~vv~Is~-d~-----~~~~~~~~~~~~~~~~   89 (173)
T cd03015          19 FKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK---LNAEVLGVST-DS-----HFSHLAWRNTPRKEGG   89 (173)
T ss_pred             ceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEec-CC-----HHHHHHHHHhhhhhCC
Confidence            3679999999999999887 7888655  567799 9999974   4699999985 41     33334565543     


Q ss_pred             -cCCCeeeecCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceeccc
Q 044391          395 -AMMPWYTVQHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILNQN  441 (691)
Q Consensus       395 -~~MPWyAVp~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~N  441 (691)
                       ...||-.+.-++   .+.    .+.|++.      .+|..+||||+|+++..+
T Consensus        90 ~~~~~f~~l~D~~---~~~----~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~  136 (173)
T cd03015          90 LGKINFPLLADPK---KKI----SRDYGVLDEEEGVALRGTFIIDPEGIIRHIT  136 (173)
T ss_pred             ccCcceeEEECCc---hhH----HHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence             356776665443   233    3346765      578999999999998776

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PTZ00256 glutathione peroxidase; Provisional

Probab=98.10  E-value=4.3e-05  Score=75.26  Aligned_cols=116  Identities=16%  Similarity=0.238  Sum_probs=74.2

Q ss_pred             CCCCceeecceecCcEE-EEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEeccc--CCCCCChhhHHHHHH--
Q 044391          321 GSSRTRVNIEVLRRKHV-LLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVD--RSIAWDEGYRQKFEQ--  392 (691)
Q Consensus       321 g~~~~kV~Is~L~gK~V-lL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd--~s~~W~D~d~~~F~~--  392 (691)
                      ..+|+.|++++++||.| ++++-+.||++|  +++.|+ +|++.+.   .+++||-||.-+  ...+++.++-.+|-.  
T Consensus        27 d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~---~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~  103 (183)
T PTZ00256         27 DIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS---QGLEILAFPCNQFMEQEPWDEPEIKEYVQKK  103 (183)
T ss_pred             cCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh---CCcEEEEEecccccccCCCCHHHHHHHHHHh
Confidence            45677899999999965 455579999776  678899 9999974   459999998511  112233344455532  


Q ss_pred             HhcCCCeeee--cCCCCCchHHHHHHHHhh--------CcCCceE---EEEeCCCCceecc
Q 044391          393 LQAMMPWYTV--QHPTIIEPAVVKYAKEVW--------KFSKKAI---LVPVDPQGRILNQ  440 (691)
Q Consensus       393 ~~~~MPWyAV--p~~d~i~~~~~r~ike~f--------~~~~iP~---LVvL~pqGkv~~~  440 (691)
                      +.-+.|=++-  +-+. ...+..+++++..        .+.++|.   .+++|++|+++..
T Consensus       104 ~~~~fpv~~d~d~~g~-~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~  163 (183)
T PTZ00256        104 FNVDFPLFQKIEVNGE-NTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKY  163 (183)
T ss_pred             cCCCCCCceEEecCCC-CCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEE
Confidence            2222232210  1111 1134666777765        4668995   6999999999974

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.10  E-value=1.7e-05  Score=72.16  Aligned_cols=98  Identities=15%  Similarity=0.009  Sum_probs=66.9

Q ss_pred             ceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeee
Q 044391          325 TRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYT  401 (691)
Q Consensus       325 ~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyA  401 (691)
                      ..++.++++||.|+|+|-+.||++|.  .+.|. .+++     . +++||-|+.-|     +.++-++|-+. ...||..
T Consensus        16 ~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~-----~-~~~vv~v~~~~-----~~~~~~~~~~~-~~~~~~~   83 (127)
T cd03010          16 KTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQ-----G-RVPIYGINYKD-----NPENALAWLAR-HGNPYAA   83 (127)
T ss_pred             ccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHh-----c-CcEEEEEECCC-----CHHHHHHHHHh-cCCCCce
Confidence            45888999999999999999998874  45565 5433     1 38888887522     12233334322 3347765


Q ss_pred             ecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          402 VQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       402 Vp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      +-...    .  ..+.+.|++.++|..++||++|+++..
T Consensus        84 ~~~D~----~--~~~~~~~~v~~~P~~~~ld~~G~v~~~  116 (127)
T cd03010          84 VGFDP----D--GRVGIDLGVYGVPETFLIDGDGIIRYK  116 (127)
T ss_pred             EEECC----c--chHHHhcCCCCCCeEEEECCCceEEEE
Confidence            54422    1  245566999999999999999998854

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PLN02412 probable glutathione peroxidase

Probab=98.06  E-value=3e-05  Score=75.40  Aligned_cols=117  Identities=15%  Similarity=0.186  Sum_probs=79.9

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCC-CC-CChhh-HHHH-HHH
Q 044391          321 GSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRS-IA-WDEGY-RQKF-EQL  393 (691)
Q Consensus       321 g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s-~~-W~D~d-~~~F-~~~  393 (691)
                      ..+|+++.++.++||.|+|+|-+.||++|  +.+-|+ .|++.+.   .+++||=||.-+.. .+ -+.++ .+.| +.+
T Consensus        16 d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~---~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~   92 (167)
T PLN02412         16 DIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE---QGFEILAFPCNQFLGQEPGSNEEIQQTVCTRF   92 (167)
T ss_pred             CCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh---CCcEEEEecccccccCCCCCHHHHHHHHHHcc
Confidence            45677899999999999999999999776  568899 9999984   45999999862100 01 12222 3445 555


Q ss_pred             hcCCCeeee--cCCCCCchHHHHHHHHh----hC--cCCceEEEEeCCCCceeccc
Q 044391          394 QAMMPWYTV--QHPTIIEPAVVKYAKEV----WK--FSKKAILVPVDPQGRILNQN  441 (691)
Q Consensus       394 ~~~MPWyAV--p~~d~i~~~~~r~ike~----f~--~~~iP~LVvL~pqGkv~~~N  441 (691)
                      .-+.|+++-  +-+.. .....++++..    +.  +...|+-.++|++|+++..-
T Consensus        93 ~~~fpvl~~~d~~g~~-~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~  147 (167)
T PLN02412         93 KAEFPIFDKVDVNGKN-TAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRY  147 (167)
T ss_pred             CCCCceEeEEeeCCCC-CCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEE
Confidence            667788752  22211 22445565543    12  55679999999999999764

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.04  E-value=2.2e-05  Score=72.15  Aligned_cols=101  Identities=22%  Similarity=0.295  Sum_probs=72.3

Q ss_pred             CCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCC
Q 044391          323 SRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMP  398 (691)
Q Consensus       323 ~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MP  398 (691)
                      +|+.+++++++||.++|+|- +.|||.|  +++.|. .|+++++   .+++||.|+. |     +.+.-.+|-+.+ .++
T Consensus        12 ~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~---~~~~vv~is~-d-----~~~~~~~~~~~~-~~~   81 (140)
T cd03017          12 DGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA---LGAVVIGVSP-D-----SVESHAKFAEKY-GLP   81 (140)
T ss_pred             CCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEcC-C-----CHHHHHHHHHHh-CCC
Confidence            46679999999999999887 5777655  567788 9998873   4689999985 4     234445554432 456


Q ss_pred             eeeecCCCCCchHHHHHHHHhhCcCCc---------eEEEEeCCCCceecc
Q 044391          399 WYTVQHPTIIEPAVVKYAKEVWKFSKK---------AILVPVDPQGRILNQ  440 (691)
Q Consensus       399 WyAVp~~d~i~~~~~r~ike~f~~~~i---------P~LVvL~pqGkv~~~  440 (691)
                      |-.+--     ..  +.+.+.|++...         |..+++|++|+++..
T Consensus        82 ~~~l~D-----~~--~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~  125 (140)
T cd03017          82 FPLLSD-----PD--GKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKV  125 (140)
T ss_pred             ceEEEC-----Cc--cHHHHHhCCccccccccCCcceeEEEECCCCEEEEE
Confidence            554432     22  345667899887         999999999999864

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=98.04  E-value=6.1e-05  Score=69.02  Aligned_cols=106  Identities=12%  Similarity=0.147  Sum_probs=75.1

Q ss_pred             cCCCCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391          320 DGSSRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA  395 (691)
Q Consensus       320 ~g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~  395 (691)
                      .+.+++.+++++++||.++|+|- +.||+.|  +++-|. .|++++   ..+++||.|+. |     +....++|-+-..
T Consensus         8 ~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~---~~~~~~i~is~-d-----~~~~~~~~~~~~~   78 (140)
T cd02971           8 PATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFA---KGGAEVLGVSV-D-----SPFSHKAWAEKEG   78 (140)
T ss_pred             ccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHH---HCCCEEEEEeC-C-----CHHHHHHHHhccc
Confidence            34567789999999998888877 7898655  566788 999996   34699999985 3     2333455555443


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCcCCce---------EEEEeCCCCceeccc
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKFSKKA---------ILVPVDPQGRILNQN  441 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP---------~LVvL~pqGkv~~~N  441 (691)
                      ..||-.+--+     .  +.+.+.|++...|         ..+++|++|+++...
T Consensus        79 ~~~~~~l~D~-----~--~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~  126 (140)
T cd02971          79 GLNFPLLSDP-----D--GEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVE  126 (140)
T ss_pred             CCCceEEECC-----C--hHHHHHcCCccccccccCceeEEEEEECCCCcEEEEE
Confidence            5666555322     2  2556678887665         899999999998653

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.03  E-value=2.3e-05  Score=75.43  Aligned_cols=110  Identities=11%  Similarity=0.091  Sum_probs=74.5

Q ss_pred             cCCCCceeeccee-cCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh-
Q 044391          320 DGSSRTRVNIEVL-RRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ-  394 (691)
Q Consensus       320 ~g~~~~kV~Is~L-~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~-  394 (691)
                      ...++..|.++.+ +||.|+|+|=+.|||.|  ++.-|. +|++.++   .++++|-|++-+....+.| +.+....+. 
T Consensus        10 ~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~---~~v~~v~is~d~~~~~~~d-~~~~~~~~~~   85 (171)
T cd02969          10 PDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA---KGVAVVAINSNDIEAYPED-SPENMKAKAK   85 (171)
T ss_pred             cCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh---CCeEEEEEecCcccccccc-CHHHHHHHHH
Confidence            3345668999998 99999999999999876  456688 9988863   4699999986221111111 233444333 


Q ss_pred             -cCCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          395 -AMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       395 -~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                       ...||-.+-     |..  +.+.+.|++.+.|..+++||+|+++-.
T Consensus        86 ~~~~~~~~l~-----D~~--~~~~~~~~v~~~P~~~lid~~G~v~~~  125 (171)
T cd02969          86 EHGYPFPYLL-----DET--QEVAKAYGAACTPDFFLFDPDGKLVYR  125 (171)
T ss_pred             HCCCCceEEE-----CCc--hHHHHHcCCCcCCcEEEECCCCeEEEe
Confidence             234433222     222  356677999999999999999999854

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.00  E-value=4.8e-05  Score=75.34  Aligned_cols=96  Identities=15%  Similarity=0.151  Sum_probs=67.5

Q ss_pred             CCCceeec--ceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH-Hhc
Q 044391          322 SSRTRVNI--EVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ-LQA  395 (691)
Q Consensus       322 ~~~~kV~I--s~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~-~~~  395 (691)
                      .+|+.+.+  +.++||.|+|+|.+.|||+|  +++.+. +|++      .++.+++|+. |     ++++.++|-. +.-
T Consensus        60 ~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~------~~~~vv~Is~-~-----~~~~~~~~~~~~~~  127 (189)
T TIGR02661        60 FDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARA------EETDVVMISD-G-----TPAEHRRFLKDHEL  127 (189)
T ss_pred             CCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHh------cCCcEEEEeC-C-----CHHHHHHHHHhcCC
Confidence            45677998  45799999999999999876  456677 7754      2477899972 2     3444455543 322


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                      +.|.|..      +    ..+.+.|++.++|..+++|++|++..
T Consensus       128 ~~~~~~~------~----~~i~~~y~v~~~P~~~lID~~G~I~~  161 (189)
T TIGR02661       128 GGERYVV------S----AEIGMAFQVGKIPYGVLLDQDGKIRA  161 (189)
T ss_pred             Ccceeec------h----hHHHHhccCCccceEEEECCCCeEEE
Confidence            3444441      1    23445689999999999999999985

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=97.98  E-value=7.5e-05  Score=70.88  Aligned_cols=112  Identities=14%  Similarity=0.170  Sum_probs=72.0

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEec--ccCCCCCChhhHHHHHHHhcC
Q 044391          322 SSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPI--VDRSIAWDEGYRQKFEQLQAM  396 (691)
Q Consensus       322 ~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpi--Vd~s~~W~D~d~~~F~~~~~~  396 (691)
                      .+|+.+++++++||.|+|+|-+.|||+|  +++.|. +|++.+.   .+++||-||.  +..+.+=+.++..+|-+-...
T Consensus        10 ~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~---~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~   86 (153)
T TIGR02540        10 ARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGP---SHFNVLAFPCNQFGESEPDSSKEIESFARRNYG   86 (153)
T ss_pred             CCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh---CCeEEEEEeccccccCCCCCHHHHHHHHHHhcC
Confidence            4567899999999999999999999876  668899 9999973   4699999985  211100012334555432123


Q ss_pred             CCeeeec-----CCCCCchHHHHHHHHhhCcCCceE----EEEeCCCCceecc
Q 044391          397 MPWYTVQ-----HPTIIEPAVVKYAKEVWKFSKKAI----LVPVDPQGRILNQ  440 (691)
Q Consensus       397 MPWyAVp-----~~d~i~~~~~r~ike~f~~~~iP~----LVvL~pqGkv~~~  440 (691)
                      .++..+.     -++  -....+++.+  +..+.|.    ..++|++|+++..
T Consensus        87 ~~fp~~~d~~~~~~~--~~~~~~~~~~--~~~~~p~~~~~tflID~~G~v~~~  135 (153)
T TIGR02540        87 VTFPMFSKIKILGSE--AEPAFRFLVD--SSKKEPRWNFWKYLVNPEGQVVKF  135 (153)
T ss_pred             CCCCccceEecCCCC--CCcHHHHHHh--cCCCCCCCccEEEEEcCCCcEEEE
Confidence            3332221     111  1123455443  3456897    9999999999864

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=97.95  E-value=3.1e-05  Score=69.70  Aligned_cols=95  Identities=22%  Similarity=0.327  Sum_probs=65.5

Q ss_pred             CCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCe
Q 044391          323 SRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPW  399 (691)
Q Consensus       323 ~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPW  399 (691)
                      +|+.+..+.++||.++|+|-+.||++|.  .+.|. +|++        ++++-|+. |+.   +.+..++|-+-+ .+||
T Consensus         9 ~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~--------~~~i~i~~-~~~---~~~~~~~~~~~~-~~~~   75 (123)
T cd03011           9 DGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD--------YPVVSVAL-RSG---DDGAVARFMQKK-GYGF   75 (123)
T ss_pred             CCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh--------CCEEEEEc-cCC---CHHHHHHHHHHc-CCCc
Confidence            4467999999999999999999998774  46687 7765        67788875 210   123334444433 2555


Q ss_pred             eeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          400 YTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       400 yAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                      -.+.-++       ..+.+.|++.+.|+++++|++| +.
T Consensus        76 ~~~~d~~-------~~~~~~~~i~~~P~~~vid~~g-i~  106 (123)
T cd03011          76 PVINDPD-------GVISARWGVSVTPAIVIVDPGG-IV  106 (123)
T ss_pred             cEEECCC-------cHHHHhCCCCcccEEEEEcCCC-eE
Confidence            4443221       2466679999999999999999 54

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.93  E-value=0.00011  Score=90.04  Aligned_cols=103  Identities=17%  Similarity=0.123  Sum_probs=73.1

Q ss_pred             Cceeec-ceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHH---HHHHHhcC
Q 044391          324 RTRVNI-EVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQ---KFEQLQAM  396 (691)
Q Consensus       324 ~~kV~I-s~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~---~F~~~~~~  396 (691)
                      +..+.+ ++++||.|+|.|.+.||++|  +.+.|+ +|++.+   +.+|+||-|+..+-   -++++.+   .|- ....
T Consensus       409 g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~---~~~~~vvgV~~~~~---D~~~~~~~~~~~~-~~~~  481 (1057)
T PLN02919        409 TAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYK---DQPFTVVGVHSAKF---DNEKDLEAIRNAV-LRYN  481 (1057)
T ss_pred             CccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcC---CCCeEEEEEecccc---cccccHHHHHHHH-HHhC
Confidence            455776 58999999999999999887  568899 999976   34599999975321   0122222   333 2456


Q ss_pred             CCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          397 MPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       397 MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      ++|..+.-.+   .    .+-+.|+++++|+.+++|++|+++..
T Consensus       482 i~~pvv~D~~---~----~~~~~~~V~~iPt~ilid~~G~iv~~  518 (1057)
T PLN02919        482 ISHPVVNDGD---M----YLWRELGVSSWPTFAVVSPNGKLIAQ  518 (1057)
T ss_pred             CCccEEECCc---h----HHHHhcCCCccceEEEECCCCeEEEE
Confidence            7776554322   2    34456999999999999999999743

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=97.93  E-value=3.4e-05  Score=76.01  Aligned_cols=98  Identities=16%  Similarity=0.019  Sum_probs=65.3

Q ss_pred             ceeeccee-cCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCee
Q 044391          325 TRVNIEVL-RRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWY  400 (691)
Q Consensus       325 ~kV~Is~L-~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWy  400 (691)
                      +.+..+.+ +||.|+|+|-+.||++|  +.+.|. +++       .+++||-|+.-|     +..+..+|-+- ..+||.
T Consensus        58 ~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~-------~~~~vi~v~~~~-----~~~~~~~~~~~-~~~~~~  124 (185)
T PRK15412         58 QFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA-------QGIRVVGMNYKD-----DRQKAISWLKE-LGNPYA  124 (185)
T ss_pred             ccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH-------cCCEEEEEECCC-----CHHHHHHHHHH-cCCCCc
Confidence            44666665 79999999999999887  456677 543       258999987511     12223344332 245666


Q ss_pred             eecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceeccc
Q 044391          401 TVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQN  441 (691)
Q Consensus       401 AVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~N  441 (691)
                      .+.+..    .  ..+.+.|++.+.|..+++|++|+++...
T Consensus       125 ~~~~D~----~--~~~~~~~gv~~~P~t~vid~~G~i~~~~  159 (185)
T PRK15412        125 LSLFDG----D--GMLGLDLGVYGAPETFLIDGNGIIRYRH  159 (185)
T ss_pred             eEEEcC----C--ccHHHhcCCCcCCeEEEECCCceEEEEE
Confidence            444322    1  1244578999999999999999988543

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=97.92  E-value=7.7e-05  Score=77.33  Aligned_cols=118  Identities=14%  Similarity=0.155  Sum_probs=75.5

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCC--ChhhHHHHH--HH
Q 044391          321 GSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAW--DEGYRQKFE--QL  393 (691)
Q Consensus       321 g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W--~D~d~~~F~--~~  393 (691)
                      ..+|+.|.+++++||.|+|.|-+.||++|  +++.|+ +|++.+.   .+++||-|++-+....-  +.++..+|-  .+
T Consensus        86 d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~---~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~  162 (236)
T PLN02399         86 DIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT---QGFEILAFPCNQFGGQEPGSNPEIKQFACTRF  162 (236)
T ss_pred             CCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc---CCcEEEEEecccccccCCCCHHHHHHHHHHhc
Confidence            45667899999999999999999999876  678899 9999874   45999999962110000  123445563  33


Q ss_pred             hcCCCeeeecCCC-CCchHHHHHHHHhhC------cCCceEEEEeCCCCceeccc
Q 044391          394 QAMMPWYTVQHPT-IIEPAVVKYAKEVWK------FSKKAILVPVDPQGRILNQN  441 (691)
Q Consensus       394 ~~~MPWyAVp~~d-~i~~~~~r~ike~f~------~~~iP~LVvL~pqGkv~~~N  441 (691)
                      ....|-++=.-.+ ..-.+..++++..+.      ++..|.-+++|++|+++..-
T Consensus       163 g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~  217 (236)
T PLN02399        163 KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERY  217 (236)
T ss_pred             CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEE
Confidence            3344432100000 001223455554432      35679999999999999743

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=97.92  E-value=5.9e-05  Score=70.10  Aligned_cols=108  Identities=11%  Similarity=0.056  Sum_probs=71.8

Q ss_pred             ecCCCCceeecceecC-cEEEEEE-ecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH
Q 044391          319 VDGSSRTRVNIEVLRR-KHVLLLI-SSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL  393 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~g-K~VlL~f-Sal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~  393 (691)
                      +...+|+.+++++++| |.+.|+| .+.||+.|  +++.|+ +|+++++   .++.+|.|+. |     +.+..++|-+-
T Consensus        12 l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~---~~v~vi~vs~-d-----~~~~~~~~~~~   82 (149)
T cd03018          12 LPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEA---AGAEVLGISV-D-----SPFSLRAWAEE   82 (149)
T ss_pred             ecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh---CCCEEEEecC-C-----CHHHHHHHHHh
Confidence            3345677899999999 8777666 58999776  556789 9999873   4588999984 3     23344555443


Q ss_pred             hcCCCeeeecCCCCCchHHHHHHHHhhCcC----Cc--eEEEEeCCCCceeccc
Q 044391          394 QAMMPWYTVQHPTIIEPAVVKYAKEVWKFS----KK--AILVPVDPQGRILNQN  441 (691)
Q Consensus       394 ~~~MPWyAVp~~d~i~~~~~r~ike~f~~~----~i--P~LVvL~pqGkv~~~N  441 (691)
                      + ..+|..+-     |....+.+.+.|++.    ++  |..+++|++|+++-..
T Consensus        83 ~-~~~~~~~~-----D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~  130 (149)
T cd03018          83 N-GLTFPLLS-----DFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAW  130 (149)
T ss_pred             c-CCCceEec-----CCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEE
Confidence            3 35554432     211124455567876    33  3899999999988653

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=97.90  E-value=1.9e-05  Score=74.98  Aligned_cols=114  Identities=15%  Similarity=0.165  Sum_probs=67.5

Q ss_pred             CCCceeecceecCcEEEEEEecCCCC-hhhhHHHH-HHHHhhccCCCCeeEEEEecccCC--CCC-ChhhHHHHHHH--h
Q 044391          322 SSRTRVNIEVLRRKHVLLLISSLDLS-DEEILVLH-LYREHKAREEFDYAIVWLPIVDRS--IAW-DEGYRQKFEQL--Q  394 (691)
Q Consensus       322 ~~~~kV~Is~L~gK~VlL~fSal~~~-~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s--~~W-~D~d~~~F~~~--~  394 (691)
                      .+|+.+++++++||.|+|+|=+.||+ ..+++.|+ +|++.+.   .+++||-|++ |..  .+= +.++-++|-+-  .
T Consensus        10 ~~G~~v~l~~~~Gk~vvl~fwatwC~C~~e~p~l~~l~~~~~~---~~~~vv~v~~-~~~~~~~~~~~~~~~~f~~~~~~   85 (152)
T cd00340          10 IDGEPVSLSKYKGKVLLIVNVASKCGFTPQYEGLEALYEKYKD---RGLVVLGFPC-NQFGGQEPGSNEEIKEFCETNYG   85 (152)
T ss_pred             CCCCEEeHHHhCCCEEEEEEEcCCCCchHHHHHHHHHHHHhcC---CCEEEEEecc-CccccCCCCCHHHHHHHHHHhcC
Confidence            45678999999999999999999997 23678899 9999873   4589999875 110  000 11234566432  2


Q ss_pred             cCCCeeeec--CCCCCchHHHHHHHHhh------CcCCceEEEEeCCCCceecc
Q 044391          395 AMMPWYTVQ--HPTIIEPAVVKYAKEVW------KFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       395 ~~MPWyAVp--~~d~i~~~~~r~ike~f------~~~~iP~LVvL~pqGkv~~~  440 (691)
                      -+.|.++-+  ..... ....+++....      ..+..|+.+++|++|+++..
T Consensus        86 ~~fp~~~d~d~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~  138 (152)
T cd00340          86 VTFPMFAKIDVNGENA-HPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKR  138 (152)
T ss_pred             CCceeeeeEeccCCCC-ChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEE
Confidence            244544321  11100 11222211111      12223389999999999864

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=97.83  E-value=6.3e-05  Score=73.12  Aligned_cols=96  Identities=19%  Similarity=0.042  Sum_probs=63.3

Q ss_pred             eeeccee-cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeee
Q 044391          326 RVNIEVL-RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYT  401 (691)
Q Consensus       326 kV~Is~L-~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyA  401 (691)
                      .+..+.+ +||.|+|+|.+.||++|.  .+.|. +++       .+++||.|+.-+     +.++..+|-+- ..+||..
T Consensus        54 ~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~-------~~~~vi~V~~~~-----~~~~~~~~~~~-~~~~f~~  120 (173)
T TIGR00385        54 AYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK-------DGLPIVGVDYKD-----QSQNALKFLKE-LGNPYQA  120 (173)
T ss_pred             ccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH-------cCCEEEEEECCC-----ChHHHHHHHHH-cCCCCce
Confidence            3555565 799999999999998874  35555 542       248999997511     12222344322 2467655


Q ss_pred             ecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          402 VQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       402 Vp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      +.+..    .  ..+.+.|++.+.|..+++|++|+++..
T Consensus       121 v~~D~----~--~~~~~~~~v~~~P~~~~id~~G~i~~~  153 (173)
T TIGR00385       121 ILIDP----N--GKLGLDLGVYGAPETFLVDGNGVILYR  153 (173)
T ss_pred             EEECC----C--CchHHhcCCeeCCeEEEEcCCceEEEE
Confidence            44422    1  234556899999999999999998854

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=97.81  E-value=9.7e-05  Score=73.81  Aligned_cols=105  Identities=12%  Similarity=0.055  Sum_probs=74.0

Q ss_pred             CCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCC
Q 044391          323 SRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMP  398 (691)
Q Consensus       323 ~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MP  398 (691)
                      .-..+.+++++||.|+|+|= +.||+.|  ++.-|. .|+++++   .+++||-||. |+     -...+.|-+-...+ 
T Consensus        20 ~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~---~g~~vigIS~-D~-----~~~~~a~~~~~~~~-   89 (187)
T PRK10382         20 EFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQK---LGVDVYSVST-DT-----HFTHKAWHSSSETI-   89 (187)
T ss_pred             cceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHh---CCCEEEEEeC-CC-----HHHHHHHHHhhccc-
Confidence            34568889999999988887 8888554  677799 9999874   4699999995 42     34456675443222 


Q ss_pred             eeeecCCCCCchHHHHHHHHhhCc----CCc--eEEEEeCCCCceecc
Q 044391          399 WYTVQHPTIIEPAVVKYAKEVWKF----SKK--AILVPVDPQGRILNQ  440 (691)
Q Consensus       399 WyAVp~~d~i~~~~~r~ike~f~~----~~i--P~LVvL~pqGkv~~~  440 (691)
                       ..+|||=+.|.  -+.+.+.|++    .+.  |..+|+||+|++...
T Consensus        90 -~~l~fpllsD~--~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~  134 (187)
T PRK10382         90 -AKIKYAMIGDP--TGALTRNFDNMREDEGLADRATFVVDPQGIIQAI  134 (187)
T ss_pred             -cCCceeEEEcC--chHHHHHcCCCcccCCceeeEEEEECCCCEEEEE
Confidence             34455433332  3566677887    366  999999999998654

>TIGR03137 AhpC peroxiredoxin

Probab=97.81  E-value=7.4e-05  Score=73.91  Aligned_cols=100  Identities=14%  Similarity=0.111  Sum_probs=69.6

Q ss_pred             eeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh---cCCC
Q 044391          326 RVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ---AMMP  398 (691)
Q Consensus       326 kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~---~~MP  398 (691)
                      .++.++++||.|+|+|= +.||+.|  +++-|. .|+++++   .+++||.||. |+     ....+.|....   ..+|
T Consensus        23 ~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~---~gv~vi~VS~-D~-----~~~~~~~~~~~~~~~~l~   93 (187)
T TIGR03137        23 EVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKK---LGVEVYSVST-DT-----HFVHKAWHDTSEAIGKIT   93 (187)
T ss_pred             EecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh---cCCcEEEEeC-CC-----HHHHHHHHhhhhhccCcc
Confidence            57888999999999998 8898665  667799 9999974   4689999985 41     23445554332   2445


Q ss_pred             eeeecCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceeccc
Q 044391          399 WYTVQHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILNQN  441 (691)
Q Consensus       399 WyAVp~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~N  441 (691)
                      +..+     .|.  ...+.+.|++.      ..|..+++|++|++....
T Consensus        94 fpll-----sD~--~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~  135 (187)
T TIGR03137        94 YPML-----GDP--TGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVE  135 (187)
T ss_pred             eeEE-----ECC--ccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEE
Confidence            3322     222  23455567875      369999999999998654

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=97.81  E-value=8.5e-05  Score=70.12  Aligned_cols=104  Identities=13%  Similarity=0.162  Sum_probs=70.8

Q ss_pred             cCCCCceeecceecCcEEEEEEecCC-CChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391          320 DGSSRTRVNIEVLRRKHVLLLISSLD-LSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA  395 (691)
Q Consensus       320 ~g~~~~kV~Is~L~gK~VlL~fSal~-~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~  395 (691)
                      -..+|..+++++++||.++|+|=+.| ||.|  ++..|. .|+++++   .++++|-|++ |     +....++|-+-. 
T Consensus        16 ~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~---~~v~vi~Is~-d-----~~~~~~~~~~~~-   85 (154)
T PRK09437         16 PDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK---AGVVVLGIST-D-----KPEKLSRFAEKE-   85 (154)
T ss_pred             eCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEcC-C-----CHHHHHHHHHHh-
Confidence            34566789999999999999998765 5435  556788 9999874   4589999875 3     344445554433 


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCcCCc------------eEEEEeCCCCceecc
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKFSKK------------AILVPVDPQGRILNQ  440 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~~i------------P~LVvL~pqGkv~~~  440 (691)
                      ..||-.+.-++       +.+.+.|++...            |..++|||+|+++..
T Consensus        86 ~~~~~~l~D~~-------~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~  135 (154)
T PRK09437         86 LLNFTLLSDED-------HQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV  135 (154)
T ss_pred             CCCCeEEECCC-------chHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence            45665543221       234455776543            778999999999865

>PTZ00056 glutathione peroxidase; Provisional

Probab=97.76  E-value=0.00014  Score=72.96  Aligned_cols=113  Identities=12%  Similarity=0.152  Sum_probs=72.9

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccC-CCCC-ChhhHHHHHHHhcC
Q 044391          322 SSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDR-SIAW-DEGYRQKFEQLQAM  396 (691)
Q Consensus       322 ~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~-s~~W-~D~d~~~F~~~~~~  396 (691)
                      .+|+.|+++.++||.|+|.|=+.||++|  +.+.|+ +|++.+.   .+++||-||+-+. ..+. +.++-++|-. ...
T Consensus        27 ~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~---~g~~vvgv~~~~~~~~e~d~~e~~~~f~~-~~~  102 (199)
T PTZ00056         27 LEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP---LGLEILAFPTSQFLNQEFPNTKDIRKFND-KNK  102 (199)
T ss_pred             CCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc---CceEEEEecchhccCCCCCCHHHHHHHHH-HcC
Confidence            4567899999999999999999999776  678899 9999873   4599999986210 0011 1233455543 234


Q ss_pred             CCeeeec-----CCCCCchHHHHHHHH----hhCcCCc-------eEEEEeCCCCceecc
Q 044391          397 MPWYTVQ-----HPTIIEPAVVKYAKE----VWKFSKK-------AILVPVDPQGRILNQ  440 (691)
Q Consensus       397 MPWyAVp-----~~d~i~~~~~r~ike----~f~~~~i-------P~LVvL~pqGkv~~~  440 (691)
                      ++|..+-     -.+  ..++.+++++    .++..+.       |+-+++|++|+++..
T Consensus       103 ~~fpvl~d~~v~g~~--~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~  160 (199)
T PTZ00056        103 IKYNFFEPIEVNGEN--THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAY  160 (199)
T ss_pred             CCceeeeeeeccCCc--cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEE
Confidence            5554321     111  2345666653    2333322       378999999999953

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=97.75  E-value=1.8e-05  Score=77.42  Aligned_cols=46  Identities=20%  Similarity=0.395  Sum_probs=38.8

Q ss_pred             CCcEEEEEccCChhHH---HHHHHHHHHHHHHh---CCceeeEEecccChHHHH
Q 044391          489 EERYICLYGGGDIEWI---RRFTTSAKAVARAA---QINLGMAYVGKNNAKERF  536 (691)
Q Consensus       489 egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a---~~~~E~v~Vgkdn~~e~v  536 (691)
                      +||.|+||||+  +||   |+||+.+..+.+..   +.+||+||||+|...+..
T Consensus        32 ~gKvV~lyFsA--~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~   83 (157)
T KOG2501|consen   32 QGKVVGLYFSA--HWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESL   83 (157)
T ss_pred             CCcEEEEEEEE--EECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHH
Confidence            89999999999  998   99999998876653   457999999999765444

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=97.62  E-value=0.00029  Score=64.94  Aligned_cols=101  Identities=14%  Similarity=0.198  Sum_probs=64.7

Q ss_pred             CCCceeecceec--CcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcC
Q 044391          322 SSRTRVNIEVLR--RKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAM  396 (691)
Q Consensus       322 ~~~~kV~Is~L~--gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~  396 (691)
                      .+|+.++++++.  ++.|++||-+.|||.|  +++-|. .|++++   +.+++||-|+. |     +......|-+-. .
T Consensus        10 ~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~---~~~v~vv~V~~-~-----~~~~~~~~~~~~-~   79 (149)
T cd02970          10 AGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELD---ALGVELVAVGP-E-----SPEKLEAFDKGK-F   79 (149)
T ss_pred             CCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHH---hcCeEEEEEeC-C-----CHHHHHHHHHhc-C
Confidence            456679998875  3456666679999776  567799 999987   34589999975 2     122222343321 2


Q ss_pred             CCeeeecCCCCCchHHHHHHHHhhCcC-----------------------------CceEEEEeCCCCceec
Q 044391          397 MPWYTVQHPTIIEPAVVKYAKEVWKFS-----------------------------KKAILVPVDPQGRILN  439 (691)
Q Consensus       397 MPWyAVp~~d~i~~~~~r~ike~f~~~-----------------------------~iP~LVvL~pqGkv~~  439 (691)
                      .||..+-     |..  +.+.+.|++.                             ..|..+|+|++|++.-
T Consensus        80 ~~~p~~~-----D~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~  144 (149)
T cd02970          80 LPFPVYA-----DPD--RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILF  144 (149)
T ss_pred             CCCeEEE-----CCc--hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEE
Confidence            2332222     322  2344557773                             7999999999999874

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=97.61  E-value=0.00026  Score=65.73  Aligned_cols=105  Identities=7%  Similarity=-0.009  Sum_probs=66.9

Q ss_pred             cCCCCceeecceecCcEEEEEEecCC-CChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391          320 DGSSRTRVNIEVLRRKHVLLLISSLD-LSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA  395 (691)
Q Consensus       320 ~g~~~~kV~Is~L~gK~VlL~fSal~-~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~  395 (691)
                      ...+|..+++++++||.|.|+|=+.| |++|  +++.|. .|++.+     +++||-|+. |     +....++|.+-. 
T Consensus        12 ~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-----~~~vi~Is~-d-----~~~~~~~~~~~~-   79 (143)
T cd03014          12 VTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-----NTVVLTISA-D-----LPFAQKRWCGAE-   79 (143)
T ss_pred             ECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-----CCEEEEEEC-C-----CHHHHHHHHHhc-
Confidence            34456789999999999999998888 4445  566788 888842     588888875 3     133345554433 


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCcCC------ceEEEEeCCCCceeccc
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKFSK------KAILVPVDPQGRILNQN  441 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~~------iP~LVvL~pqGkv~~~N  441 (691)
                        ....+|.-.  |.. .+.+.+.|++..      .|...++|++|+++...
T Consensus        80 --~~~~~~~l~--D~~-~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~  126 (143)
T cd03014          80 --GVDNVTTLS--DFR-DHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVE  126 (143)
T ss_pred             --CCCCceEee--cCc-ccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEE
Confidence              221112111  111 123344567643      69999999999998654

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=97.59  E-value=0.00061  Score=66.96  Aligned_cols=114  Identities=16%  Similarity=0.234  Sum_probs=79.7

Q ss_pred             CceecCCCCceeecceecCcEEEEEEecCCCCh-h--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCCh--hhHHH
Q 044391          316 QPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSD-E--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDE--GYRQK  389 (691)
Q Consensus       316 ~~l~~g~~~~kV~Is~L~gK~VlL~fSal~~~~-~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D--~d~~~  389 (691)
                      .+-+...+|+.|..++|+||.++++|-=..||. |  .+..|. +.++|.++ +.++++|+|++ |   |..|  +..++
T Consensus        34 ~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~-~~~v~~v~ISv-D---P~~DTp~~L~~  108 (174)
T PF02630_consen   34 DFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEE-GKDVQFVFISV-D---PERDTPEVLKK  108 (174)
T ss_dssp             T-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHT-TTTEEEEEEES-S---TTTC-HHHHHH
T ss_pred             CcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhc-cCceEEEEEEe-C---CCCCCHHHHHH
Confidence            344445567789999999999999999988854 4  345688 99999877 78999999996 6   4444  33466


Q ss_pred             HHHHhcCCCeeeecCCCCCchHHHHHHHHhhCcC----------------CceEEEEeCCCCceec
Q 044391          390 FEQLQAMMPWYTVQHPTIIEPAVVKYAKEVWKFS----------------KKAILVPVDPQGRILN  439 (691)
Q Consensus       390 F~~~~~~MPWyAVp~~d~i~~~~~r~ike~f~~~----------------~iP~LVvL~pqGkv~~  439 (691)
                      |-+.+. -.|..+-+.    .+.++.+.+.|++.                .-..+.++||+|++..
T Consensus       109 Y~~~~~-~~~~~ltg~----~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~  169 (174)
T PF02630_consen  109 YAKKFG-PDFIGLTGS----REEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRA  169 (174)
T ss_dssp             HHHCHT-TTCEEEEEE----HHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEE
T ss_pred             HHHhcC-CCcceeEeC----HHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEE
Confidence            766554 356666552    35566676666643                2347889999999874

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=97.52  E-value=0.00052  Score=68.47  Aligned_cols=106  Identities=16%  Similarity=0.216  Sum_probs=67.7

Q ss_pred             CCceeecceecCcEEEEEEecCC-C--ChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH-HhcCC
Q 044391          323 SRTRVNIEVLRRKHVLLLISSLD-L--SDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ-LQAMM  397 (691)
Q Consensus       323 ~~~kV~Is~L~gK~VlL~fSal~-~--~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~-~~~~M  397 (691)
                      ++..+.+++++||.|+|+|-..+ |  |+.++.-|. .|+++++   .+++||.||. |+     ......+.. .....
T Consensus        25 ~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~---~g~~vv~IS~-d~-----~~~~~~~~~~~~~~~   95 (199)
T PTZ00253         25 SFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE---LNCEVLACSM-DS-----EYAHLQWTLQERKKG   95 (199)
T ss_pred             CCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH---cCCEEEEEeC-CC-----HHHHHHHHhChHhhC
Confidence            44579999999999999998644 5  444566688 9999974   4699999996 42     222333321 11110


Q ss_pred             CeeeecCCCCCchHHHHHHHHhhCcC----C--ceEEEEeCCCCceec
Q 044391          398 PWYTVQHPTIIEPAVVKYAKEVWKFS----K--KAILVPVDPQGRILN  439 (691)
Q Consensus       398 PWyAVp~~d~i~~~~~r~ike~f~~~----~--iP~LVvL~pqGkv~~  439 (691)
                      -.-.++||-..|.  .+.+.+.|++-    +  .|..++|||+|++..
T Consensus        96 ~~~~~~fpll~D~--~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~  141 (199)
T PTZ00253         96 GLGTMAIPMLADK--TKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQ  141 (199)
T ss_pred             CccccccceEECc--HhHHHHHcCCcccCCCceEEEEEEECCCCEEEE
Confidence            0112344433333  34556667874    3  589999999999876

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=97.46  E-value=0.0007  Score=65.81  Aligned_cols=104  Identities=9%  Similarity=0.025  Sum_probs=70.5

Q ss_pred             CCCceeecceecCcEEEEEEecCC-CChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCC
Q 044391          322 SSRTRVNIEVLRRKHVLLLISSLD-LSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMM  397 (691)
Q Consensus       322 ~~~~kV~Is~L~gK~VlL~fSal~-~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~M  397 (691)
                      .+|+.|++++++||.|+|+|=+.| |++|  +++-|+ .|++++     +++||=||. |     +....++|-+-. ..
T Consensus        32 ~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-----~~~vv~vs~-D-----~~~~~~~f~~~~-~~   99 (167)
T PRK00522         32 NDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-----NTVVLCISA-D-----LPFAQKRFCGAE-GL   99 (167)
T ss_pred             CCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-----CcEEEEEeC-C-----CHHHHHHHHHhC-CC
Confidence            456689999999999999999988 6555  667788 888862     589999985 4     134456676543 23


Q ss_pred             CeeeecCCCCCchHHHHHHHHhhCcCCce---------EEEEeCCCCceecccH
Q 044391          398 PWYTVQHPTIIEPAVVKYAKEVWKFSKKA---------ILVPVDPQGRILNQNA  442 (691)
Q Consensus       398 PWyAVp~~d~i~~~~~r~ike~f~~~~iP---------~LVvL~pqGkv~~~NA  442 (691)
                      |-    ++-+.|.. -+.+.+.|++.+.|         ...++|++|+++....
T Consensus       100 ~~----~~~lsD~~-~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~  148 (167)
T PRK00522        100 EN----VITLSDFR-DHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL  148 (167)
T ss_pred             CC----ceEeecCC-ccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence            31    11111211 22445568887777         9999999999986653

>PRK13190 putative peroxiredoxin; Provisional

Probab=97.44  E-value=0.00048  Score=69.20  Aligned_cols=99  Identities=15%  Similarity=0.168  Sum_probs=67.0

Q ss_pred             eeecceecCcEEEE-EEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHH----HHHhc-C
Q 044391          326 RVNIEVLRRKHVLL-LISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKF----EQLQA-M  396 (691)
Q Consensus       326 kV~Is~L~gK~VlL-~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F----~~~~~-~  396 (691)
                      .+++++++||.|.| +|-+.|||.|  |+.-|. .|+++++   .+++||-||+ |+     ......|    .+-.. .
T Consensus        19 ~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~---~~~~vi~vS~-D~-----~~~~~~w~~~~~~~~g~~   89 (202)
T PRK13190         19 PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKK---LGVELVGLSV-DS-----IYSHIAWLRDIEERFGIK   89 (202)
T ss_pred             cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeC-CC-----HHHHHHHHHhHHHhcCCC
Confidence            68999999998777 5789998665  677799 9999984   4699999986 31     2222233    22222 2


Q ss_pred             CCeeeecCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceecc
Q 044391          397 MPWYTVQHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILNQ  440 (691)
Q Consensus       397 MPWyAVp~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~  440 (691)
                      +||-.+-     |..  +.+.+.|++.      ..|..+++||+|++...
T Consensus        90 ~~fPll~-----D~~--~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~  132 (202)
T PRK13190         90 IPFPVIA-----DID--KELAREYNLIDENSGATVRGVFIIDPNQIVRWM  132 (202)
T ss_pred             ceEEEEE-----CCC--hHHHHHcCCccccCCcEEeEEEEECCCCEEEEE
Confidence            3443333     222  3455668874      48999999999998743

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=97.42  E-value=0.00042  Score=61.48  Aligned_cols=92  Identities=13%  Similarity=0.094  Sum_probs=54.8

Q ss_pred             cCcEEEEEEecCCCChhhhH--HHHHHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          333 RRKHVLLLISSLDLSDEEIL--VLHLYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~~--~L~iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +||+++++|++.|||.|.-.  .+.-++.+....++++.++.+.+-      .+++ ..+.-+...=+    +++    .
T Consensus         4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~----~~~----~   68 (112)
T PF13098_consen    4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNID------DSRD-ESEAVLDFDGQ----KNV----R   68 (112)
T ss_dssp             TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESH------SHHH-HHHHHHSHTCH----SSC----H
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecC------Cccc-ccccccccccc----hhh----h
Confidence            48999999999999988642  243444444333457888888872      2222 22221110000    111    1


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                      ...+.+.+.|++.+-|++|++|++|+++.
T Consensus        69 ~~~~~l~~~~~v~gtPt~~~~d~~G~~v~   97 (112)
T PF13098_consen   69 LSNKELAQRYGVNGTPTIVFLDKDGKIVY   97 (112)
T ss_dssp             HHHHHHHHHTT--SSSEEEECTTTSCEEE
T ss_pred             HHHHHHHHHcCCCccCEEEEEcCCCCEEE
Confidence            34457888899999999999999999774

...

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=97.31  E-value=0.00083  Score=63.97  Aligned_cols=72  Identities=14%  Similarity=0.033  Sum_probs=52.9

Q ss_pred             ecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391          332 LRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII  408 (691)
Q Consensus       332 L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i  408 (691)
                      -+||.|+|+|.+.||++|.  .+.|. ++++.+    ..+.++.|-+ |       .++  +.                 
T Consensus        18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~----~~~~~v~v~v-d-------~~~--~~-----------------   66 (142)
T cd02950          18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYG----DQVNFVMLNV-D-------NPK--WL-----------------   66 (142)
T ss_pred             hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhc----cCeeEEEEEc-C-------Ccc--cH-----------------
Confidence            3589999999999998875  36677 777754    3477888754 2       111  10                 


Q ss_pred             chHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          409 EPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                            .+.+.|+++++|++++++++|+++..
T Consensus        67 ------~~~~~~~V~~iPt~v~~~~~G~~v~~   92 (142)
T cd02950          67 ------PEIDRYRVDGIPHFVFLDREGNEEGQ   92 (142)
T ss_pred             ------HHHHHcCCCCCCEEEEECCCCCEEEE
Confidence                  13356899999999999999998854

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=97.20  E-value=0.00081  Score=63.28  Aligned_cols=78  Identities=12%  Similarity=0.056  Sum_probs=50.3

Q ss_pred             cCcEEEEEEecCCCChhhhHH---H--H-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCC
Q 044391          333 RRKHVLLLISSLDLSDEEILV---L--H-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPT  406 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~~~---L--~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d  406 (691)
                      ++|.|+|+|++.||+.|...-   +  . +-+.+.    .+|-.|-|   |.     |+.. ...               
T Consensus        14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~----~~fv~Vkv---D~-----~~~~-~~~---------------   65 (124)
T cd02955          14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN----ENFVPIKV---DR-----EERP-DVD---------------   65 (124)
T ss_pred             cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh----CCEEEEEE---eC-----CcCc-HHH---------------
Confidence            489999999999998886321   1  1 444443    35655544   32     1111 011               


Q ss_pred             CCchHHHHHHHHhhCcCCceEEEEeCCCCceeccc
Q 044391          407 IIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQN  441 (691)
Q Consensus       407 ~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~N  441 (691)
                         ....++....|+..|.|++|+++|+|+.++..
T Consensus        66 ---~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~   97 (124)
T cd02955          66 ---KIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG   97 (124)
T ss_pred             ---HHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence               11233445578999999999999999999876

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=97.17  E-value=0.0013  Score=69.39  Aligned_cols=106  Identities=12%  Similarity=0.070  Sum_probs=69.3

Q ss_pred             ceeeccee-cCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH-hcCCC
Q 044391          325 TRVNIEVL-RRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL-QAMMP  398 (691)
Q Consensus       325 ~kV~Is~L-~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~-~~~MP  398 (691)
                      ..++++++ +||.|+|||= +.||++|  |+.-|. .|++.++   .+++||=||+ |+     -...+.|.+. ...+-
T Consensus        88 ~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~---~gv~VigIS~-Ds-----~~~h~aw~~~~~~~~g  158 (261)
T PTZ00137         88 VQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEE---RGVKVLGVSV-DS-----PFSHKAWKELDVRQGG  158 (261)
T ss_pred             eEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEEC-CC-----HHHHHHHHhhhhhhcc
Confidence            45899997 8987777776 7888655  677799 9999984   4699999996 41     2244556542 22211


Q ss_pred             eeeecCCCCCchHHHHHHHHhhCcC-----CceEEEEeCCCCceeccc
Q 044391          399 WYTVQHPTIIEPAVVKYAKEVWKFS-----KKAILVPVDPQGRILNQN  441 (691)
Q Consensus       399 WyAVp~~d~i~~~~~r~ike~f~~~-----~iP~LVvL~pqGkv~~~N  441 (691)
                      -..++||=+.|..  +.+.+.|++.     ..|...+|||+|++....
T Consensus       159 ~~~l~fPlLsD~~--~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~  204 (261)
T PTZ00137        159 VSPLKFPLFSDIS--REVSKSFGLLRDEGFSHRASVLVDKAGVVKHVA  204 (261)
T ss_pred             ccCcceEEEEcCC--hHHHHHcCCCCcCCceecEEEEECCCCEEEEEE
Confidence            1222332222222  4556668875     489999999999988654

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=97.13  E-value=0.0024  Score=62.12  Aligned_cols=80  Identities=11%  Similarity=0.065  Sum_probs=52.6

Q ss_pred             ecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391          332 LRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII  408 (691)
Q Consensus       332 L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i  408 (691)
                      ..++.++++|-+.||++|  +.+.|+ +|++.      +++|+.|++ |      +...+       +.|   +.++.  
T Consensus        48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~------~~~Vi~Vs~-d------~~~~~-------~fp---~~~~~--  102 (153)
T TIGR02738        48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQF------GLPVYAFSL-D------GQGLT-------GFP---DPLPA--  102 (153)
T ss_pred             hcCCCEEEEEECCCChhHHHHHHHHHHHHHHc------CCcEEEEEe-C------CCccc-------ccc---cccCC--
Confidence            345666999999999876  568899 98774      388999986 3      21111       112   22221  


Q ss_pred             chHHHHHHHHhh---CcCCceEEEEeCCCCceec
Q 044391          409 EPAVVKYAKEVW---KFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       409 ~~~~~r~ike~f---~~~~iP~LVvL~pqGkv~~  439 (691)
                      +..   .+...|   ++.++|+.+++|++|+++-
T Consensus       103 ~~~---~~~~~~~~~~v~~iPTt~LID~~G~~i~  133 (153)
T TIGR02738       103 TPE---VMQTFFPNPRPVVTPATFLVNVNTRKAY  133 (153)
T ss_pred             chH---HHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence            111   233445   7899999999999988643

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=97.08  E-value=0.0023  Score=64.23  Aligned_cols=103  Identities=14%  Similarity=0.129  Sum_probs=69.1

Q ss_pred             eeecceecC-cEE-EEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH-HhcCCCe
Q 044391          326 RVNIEVLRR-KHV-LLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ-LQAMMPW  399 (691)
Q Consensus       326 kV~Is~L~g-K~V-lL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~-~~~~MPW  399 (691)
                      ++.+++++| |.| +++|-+.|||.|  ++.-|. .|+++++   .+.+|+-||+ |     +.....+|.+ ..+.+. 
T Consensus        16 ~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~---~gv~vigvS~-D-----~~~~~~~~~~~i~~~~~-   85 (203)
T cd03016          16 PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKK---RNVKLIGLSV-D-----SVESHIKWIEDIEEYTG-   85 (203)
T ss_pred             cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHH---cCCEEEEEEC-C-----CHHHHHHHHhhHHHhcC-
Confidence            589999998 655 446778888665  567799 9999984   4589999996 3     1333444533 333333 


Q ss_pred             eeecCCCCCchHHHHHHHHhhCcC----C----ceEEEEeCCCCceecc
Q 044391          400 YTVQHPTIIEPAVVKYAKEVWKFS----K----KAILVPVDPQGRILNQ  440 (691)
Q Consensus       400 yAVp~~d~i~~~~~r~ike~f~~~----~----iP~LVvL~pqGkv~~~  440 (691)
                      +.++||-..|..  +.+.+.|++.    +    .|..+||||+|++...
T Consensus        86 ~~~~fpil~D~~--~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~  132 (203)
T cd03016          86 VEIPFPIIADPD--REVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLI  132 (203)
T ss_pred             CCCceeEEECch--HHHHHHcCCccccCCCCceeeEEEEECCCCeEEEE
Confidence            556666444432  4566678865    2    3569999999998754

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK15000 peroxidase; Provisional

Probab=97.05  E-value=0.0035  Score=63.14  Aligned_cols=92  Identities=14%  Similarity=0.199  Sum_probs=63.1

Q ss_pred             cCcEEEEEEecC-CC--ChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH-Hhc-----CCCeeee
Q 044391          333 RRKHVLLLISSL-DL--SDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ-LQA-----MMPWYTV  402 (691)
Q Consensus       333 ~gK~VlL~fSal-~~--~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~-~~~-----~MPWyAV  402 (691)
                      +||.|+|+|=.. ||  |+.|+.-|. .|++++++   +++||=||. |     +....+.|.+ +..     .+|+..+
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~---g~~vigvS~-D-----~~~~~~~w~~~~~~~~g~~~i~fpll  103 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR---GVEVVGVSF-D-----SEFVHNAWRNTPVDKGGIGPVKYAMV  103 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---CCEEEEEEC-C-----CHHHHHHHHhhHHHhCCccccCceEE
Confidence            799999999887 55  445777899 99999843   599999995 4     1333344433 221     2344444


Q ss_pred             cCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceecc
Q 044391          403 QHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILNQ  440 (691)
Q Consensus       403 p~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~  440 (691)
                      --++       +.+.+.|++.      ..|..++|||+|++...
T Consensus       104 sD~~-------~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~  140 (200)
T PRK15000        104 ADVK-------REIQKAYGIEHPDEGVALRGSFLIDANGIVRHQ  140 (200)
T ss_pred             ECCC-------cHHHHHcCCccCCCCcEEeEEEEECCCCEEEEE
Confidence            3222       3455668887      69999999999998874

>TIGR02740 TraF-like TraF-like protein

Probab=97.04  E-value=0.00057  Score=72.02  Aligned_cols=88  Identities=14%  Similarity=0.129  Sum_probs=61.5

Q ss_pred             ceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeee
Q 044391          325 TRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYT  401 (691)
Q Consensus       325 ~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyA  401 (691)
                      +...++.|+||.++++|.+.||++|.  .++|. ++++.      .++|+.|++ |       .+..      ..+|-+ 
T Consensus       157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y------g~~Vi~Vsv-D-------~~~~------~~fp~~-  215 (271)
T TIGR02740       157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY------GIEVLPVSV-D-------GGPL------PGFPNA-  215 (271)
T ss_pred             HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc------CcEEEEEeC-C-------CCcc------ccCCcc-
Confidence            34788999999999999999998874  47788 77664      289999986 3       2111      112221 


Q ss_pred             ecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecccH
Q 044391          402 VQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNA  442 (691)
Q Consensus       402 Vp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA  442 (691)
                        -.   +    +.+.+.|+++++|++++++++|+.+..-+
T Consensus       216 --~~---d----~~la~~~gV~~vPtl~Lv~~~~~~v~~v~  247 (271)
T TIGR02740       216 --RP---D----AGQAQQLKIRTVPAVFLADPDPNQFTPIG  247 (271)
T ss_pred             --cC---C----HHHHHHcCCCcCCeEEEEECCCCEEEEEE
Confidence              11   1    22467799999999999999766554433

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=97.02  E-value=0.0017  Score=65.16  Aligned_cols=93  Identities=12%  Similarity=0.053  Sum_probs=65.8

Q ss_pred             CceecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH
Q 044391          316 QPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ  392 (691)
Q Consensus       316 ~~l~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~  392 (691)
                      ++-|.=.+|+.+.++.++    +++|-+.|||+|  +.+.|+ +|++.      .|+|+-|++ |       .+.     
T Consensus        55 ~~~f~l~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~------g~~Vi~Vs~-D-------~~~-----  111 (181)
T PRK13728         55 PRWFRLSNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY------GFSVFPYTL-D-------GQG-----  111 (181)
T ss_pred             CCccCCCCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc------CCEEEEEEe-C-------CCC-----
Confidence            455555577889999998    667888999776  568899 99885      289999986 3       111     


Q ss_pred             HhcCCCeeeecCCCCCchHHHHHHHHhhCc--CCceEEEEeCCCCceecc
Q 044391          393 LQAMMPWYTVQHPTIIEPAVVKYAKEVWKF--SKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       393 ~~~~MPWyAVp~~d~i~~~~~r~ike~f~~--~~iP~LVvL~pqGkv~~~  440 (691)
                              .+.||-.++.. -..+.+.|+.  .++|+.+++|++|+++-+
T Consensus       112 --------~~~fPv~~dd~-~~~~~~~~g~~~~~iPttfLId~~G~i~~~  152 (181)
T PRK13728        112 --------DTAFPEALPAP-PDVMQTFFPNIPVATPTTFLVNVNTLEALP  152 (181)
T ss_pred             --------CCCCceEecCc-hhHHHHHhCCCCCCCCeEEEEeCCCcEEEE
Confidence                    03555444211 1345667884  699999999999998643

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=96.95  E-value=0.004  Score=55.02  Aligned_cols=71  Identities=8%  Similarity=-0.043  Sum_probs=48.9

Q ss_pred             cCcEEEEEEecCCCChhhh--HHH---H-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCC
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVL---H-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPT  406 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L---~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d  406 (691)
                      +||.|+++|++.||++|.-  +.+   . +.+.++    +++.++.|-+       ++.+                    
T Consensus        10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~vd~-------~~~~--------------------   58 (104)
T cd02953          10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK----KDVVLLRADW-------TKND--------------------   58 (104)
T ss_pred             cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh----CCeEEEEEec-------CCCC--------------------
Confidence            4899999999999988854  333   3 555553    2466666542       2211                    


Q ss_pred             CCchHHHHHHHHhhCcCCceEEEEeCC-CCcee
Q 044391          407 IIEPAVVKYAKEVWKFSKKAILVPVDP-QGRIL  438 (691)
Q Consensus       407 ~i~~~~~r~ike~f~~~~iP~LVvL~p-qGkv~  438 (691)
                          .....+.+.|++.++|++++++| +|+.+
T Consensus        59 ----~~~~~~~~~~~i~~~Pti~~~~~~~g~~~   87 (104)
T cd02953          59 ----PEITALLKRFGVFGPPTYLFYGPGGEPEP   87 (104)
T ss_pred             ----HHHHHHHHHcCCCCCCEEEEECCCCCCCC
Confidence                12235567789999999999999 89876

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>PRK13599 putative peroxiredoxin; Provisional

Probab=96.88  E-value=0.0043  Score=63.38  Aligned_cols=108  Identities=13%  Similarity=0.044  Sum_probs=70.9

Q ss_pred             CCCceeecceecCcEE-EEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCC
Q 044391          322 SSRTRVNIEVLRRKHV-LLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMM  397 (691)
Q Consensus       322 ~~~~kV~Is~L~gK~V-lL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~M  397 (691)
                      ..|+.+..++++||.| +++|=+.|||.|  |+.-|. .|++.+++   +++||=||. |     +......|.+....+
T Consensus        16 ~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~---gv~vigIS~-D-----~~~~~~~w~~~i~~~   86 (215)
T PRK13599         16 TQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL---NTELIGLSV-D-----QVFSHIKWVEWIKDN   86 (215)
T ss_pred             CCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---CCEEEEEeC-C-----CHHHHHHHHHhHHHh
Confidence            4566666789999975 678888888665  667799 99999844   589999985 4     233455565432211


Q ss_pred             CeeeecCCCCCchHHHHHHHHhhCc-------CCceEEEEeCCCCceecc
Q 044391          398 PWYTVQHPTIIEPAVVKYAKEVWKF-------SKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       398 PWyAVp~~d~i~~~~~r~ike~f~~-------~~iP~LVvL~pqGkv~~~  440 (691)
                      -=+.++||=..|.  -+.+.+.|++       ...|...|+||+|++...
T Consensus        87 ~~~~i~fPil~D~--~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~  134 (215)
T PRK13599         87 TNIAIPFPVIADD--LGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI  134 (215)
T ss_pred             cCCCCceeEEECC--CchHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence            0013444432222  1244556776       368999999999999876

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=96.84  E-value=0.0034  Score=63.12  Aligned_cols=99  Identities=15%  Similarity=0.171  Sum_probs=67.9

Q ss_pred             CceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeE------EEEecccCCCCCChhhHHHH----
Q 044391          324 RTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAI------VWLPIVDRSIAWDEGYRQKF----  390 (691)
Q Consensus       324 ~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEI------VwIpiVd~s~~W~D~d~~~F----  390 (691)
                      -+.++.+.|+||.+++-|-|.||++|+  .+.|. +    ++   .+|.+      +=|.. |. ..|.   -..|    
T Consensus        49 y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~---~~~~~~~y~~t~~IN~-dd-~~~~---~~~fVk~f  116 (184)
T TIGR01626        49 YQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KA---AKFPPVKYQTTTIINA-DD-AIVG---TGMFVKSS  116 (184)
T ss_pred             ceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HH---cCCCcccccceEEEEC-cc-chhh---HHHHHHHH
Confidence            356788899999999999999998875  47787 7    32   23666      66653 21 0111   1233    


Q ss_pred             -HHHhcCCCeeeecCCCCCchHHHHHHHHhhCcCCceEE-EEeCCCCceecc
Q 044391          391 -EQLQAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAIL-VPVDPQGRILNQ  440 (691)
Q Consensus       391 -~~~~~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~L-VvL~pqGkv~~~  440 (691)
                       ++....-||-.+-...    .+  .+...|++.+.|.- +|+|++|+++..
T Consensus       117 ie~~~~~~P~~~vllD~----~g--~v~~~~gv~~~P~T~fVIDk~GkVv~~  162 (184)
T TIGR01626       117 AKKGKKENPWSQVVLDD----KG--AVKNAWQLNSEDSAIIVLDKTGKVKFV  162 (184)
T ss_pred             HHHhcccCCcceEEECC----cc--hHHHhcCCCCCCceEEEECCCCcEEEE
Confidence             4456678987665533    22  23457999999888 799999999854

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=96.81  E-value=0.018  Score=57.62  Aligned_cols=124  Identities=7%  Similarity=0.069  Sum_probs=79.8

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChh-hhHHHH-HHHHhhccCCCCeeEEEEecccC-CCCC-ChhhHHHHHH--Hh
Q 044391          321 GSSRTRVNIEVLRRKHVLLLISSLDLSDE-EILVLH-LYREHKAREEFDYAIVWLPIVDR-SIAW-DEGYRQKFEQ--LQ  394 (691)
Q Consensus       321 g~~~~kV~Is~L~gK~VlL~fSal~~~~~-e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~-s~~W-~D~d~~~F~~--~~  394 (691)
                      ..+|..|++++++||.|++.|-|.||+.+ +++-|+ +|++.+.   .+++||=||.-+- ..+. +.++-+.|-.  +-
T Consensus        12 ~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~q~~~L~~L~~~y~~---~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g   88 (183)
T PRK10606         12 TIDGEVTTLEKYAGNVLLIVNVASKCGLTPQYEQLENIQKAWAD---QGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWG   88 (183)
T ss_pred             CCCCCEEeHHHhCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHhh---CCeEEEEeeccccccCCCCCHHHHHHHHHHccC
Confidence            34567899999999999999999999664 677899 9999873   4699999997210 0000 2334455543  22


Q ss_pred             cCCCee---eecCCCCCchHHHHHHHHhhCcCCc----------------eE----------EEEeCCCCceecccHHHH
Q 044391          395 AMMPWY---TVQHPTIIEPAVVKYAKEVWKFSKK----------------AI----------LVPVDPQGRILNQNAFHM  445 (691)
Q Consensus       395 ~~MPWy---AVp~~d~i~~~~~r~ike~f~~~~i----------------P~----------LVvL~pqGkv~~~NA~~m  445 (691)
                      -+.|=+   .|.-+.  ..++-+||++.......                |.          =-++|++|+++..     
T Consensus        89 ~~Fpv~~k~dvnG~~--~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r-----  161 (183)
T PRK10606         89 VTFPMFSKIEVNGEG--RHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQR-----  161 (183)
T ss_pred             CCceeEEEEccCCCC--CCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEE-----
Confidence            233322   121121  23589999976543211                11          4678999999865     


Q ss_pred             HHHhCcccccCC
Q 044391          446 LWIWGNLAFPFS  457 (691)
Q Consensus       446 I~~wG~~AFPFT  457 (691)
                         |+...-|-+
T Consensus       162 ---~~~~~~p~~  170 (183)
T PRK10606        162 ---FSPDMTPED  170 (183)
T ss_pred             ---ECCCCCCCH
Confidence               787888854

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=96.78  E-value=0.0017  Score=59.36  Aligned_cols=81  Identities=16%  Similarity=0.226  Sum_probs=52.1

Q ss_pred             C-cEEEEEEecCCCChhhh--HHH---H-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCC
Q 044391          334 R-KHVLLLISSLDLSDEEI--LVL---H-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPT  406 (691)
Q Consensus       334 g-K~VlL~fSal~~~~~e~--~~L---~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d  406 (691)
                      | |.|+++|++.||++|.-  +.+   . +.+.++    ++|.++-|.+ |.     +.....|+.            . 
T Consensus        13 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~i~~-d~-----~~~~~~~~~------------~-   69 (125)
T cd02951          13 GKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR----AHFVVVYINI-DG-----DKEVTDFDG------------E-   69 (125)
T ss_pred             CCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH----hheEEEEEEc-cC-----CceeeccCC------------C-
Confidence            6 89999999999988853  222   2 444443    3577777764 21     111111211            0 


Q ss_pred             CCchHHHHHHHHhhCcCCceEEEEeCCC-Cceecc
Q 044391          407 IIEPAVVKYAKEVWKFSKKAILVPVDPQ-GRILNQ  440 (691)
Q Consensus       407 ~i~~~~~r~ike~f~~~~iP~LVvL~pq-Gkv~~~  440 (691)
                         ....+.+.+.|++++.|++++++++ |+++..
T Consensus        70 ---~~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~  101 (125)
T cd02951          70 ---ALSEKELARKYRVRFTPTVIFLDPEGGKEIAR  101 (125)
T ss_pred             ---CccHHHHHHHcCCccccEEEEEcCCCCceeEE
Confidence               0124566778999999999999999 888753

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=96.64  E-value=0.0026  Score=58.77  Aligned_cols=70  Identities=13%  Similarity=0.095  Sum_probs=42.5

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+|.|++.||++|..  +.+. ..+...  ..  -.+|.|-+ |       .+.+..                   
T Consensus        18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~--~~--~~fv~v~v-d-------~~~~~~-------------------   66 (117)
T cd02959          18 SGKPLMLLIHKTWCGACKALKPKFAESKEISE--LS--HNFVMVNL-E-------DDEEPK-------------------   66 (117)
T ss_pred             cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh--hc--CcEEEEEe-c-------CCCCch-------------------
Confidence            4899999999999998864  3333 322211  12  23455533 2       111000                   


Q ss_pred             hHHHHHHHHhhCcCC--ceEEEEeCCCCceecc
Q 044391          410 PAVVKYAKEVWKFSK--KAILVPVDPQGRILNQ  440 (691)
Q Consensus       410 ~~~~r~ike~f~~~~--iP~LVvL~pqGkv~~~  440 (691)
                             .+.|++.+  +|++++++|+|+++..
T Consensus        67 -------~~~~~~~g~~vPt~~f~~~~Gk~~~~   92 (117)
T cd02959          67 -------DEEFSPDGGYIPRILFLDPSGDVHPE   92 (117)
T ss_pred             -------hhhcccCCCccceEEEECCCCCCchh
Confidence                   11356655  9999999999999764

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PRK13191 putative peroxiredoxin; Provisional

Probab=96.63  E-value=0.0089  Score=61.02  Aligned_cols=99  Identities=12%  Similarity=0.150  Sum_probs=65.7

Q ss_pred             eeec-ceecCcEEEE-EEecCCCCh--hhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc-----
Q 044391          326 RVNI-EVLRRKHVLL-LISSLDLSD--EEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA-----  395 (691)
Q Consensus       326 kV~I-s~L~gK~VlL-~fSal~~~~--~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~-----  395 (691)
                      ++.. +.++||.|.| +|=+.||+.  .|+.-|. .|++++++   +.+||=||+ |+     ......|.+...     
T Consensus        24 ~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~---g~~VigvS~-Ds-----~~~h~aw~~~~~~~~~~   94 (215)
T PRK13191         24 KIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL---NTELIGLSV-DS-----NISHIEWVMWIEKNLKV   94 (215)
T ss_pred             CEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---CCEEEEEEC-CC-----HHHHHHHHhhHHHhcCC
Confidence            3666 4589997666 778888855  4777799 99999854   599999995 42     334445543221     


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCcC-------CceEEEEeCCCCceecc
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKFS-------KKAILVPVDPQGRILNQ  440 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~-------~iP~LVvL~pqGkv~~~  440 (691)
                      ..||..+--+     .  +.+.+.|++-       ..|...+|||+|++...
T Consensus        95 ~i~fPllsD~-----~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~  139 (215)
T PRK13191         95 EVPFPIIADP-----M--GNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLI  139 (215)
T ss_pred             CCceEEEECC-----c--hHHHHHcCCcccccCCceeEEEEEECCCCEEEEE
Confidence            3444433332     2  4455567763       37999999999998864

>PRK13189 peroxiredoxin; Provisional

Probab=96.62  E-value=0.011  Score=60.60  Aligned_cols=99  Identities=13%  Similarity=0.161  Sum_probs=63.2

Q ss_pred             eeecce-ecCcEEEE-EEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH-Hhc----
Q 044391          326 RVNIEV-LRRKHVLL-LISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ-LQA----  395 (691)
Q Consensus       326 kV~Is~-L~gK~VlL-~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~-~~~----  395 (691)
                      ++.+++ ++||.|.| +|=+.||+.|  ++.-|. .|++.++   .+.+||-||+ |+     .....+|-+ +..    
T Consensus        26 ~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~---~~v~VigvS~-D~-----~~~h~aw~~~~~~~~g~   96 (222)
T PRK13189         26 PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE---LNTELIGLSI-DQ-----VFSHIKWVEWIKEKLGV   96 (222)
T ss_pred             CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEEC-CC-----HHHHHHHHHhHHHhcCc
Confidence            366665 69996655 6678888555  677799 9999974   4689999996 41     223334433 222    


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCcC-------CceEEEEeCCCCceecc
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKFS-------KKAILVPVDPQGRILNQ  440 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~-------~iP~LVvL~pqGkv~~~  440 (691)
                      .+|+--+-     |.  -+.+.+.|++.       ..|..++|||+|++...
T Consensus        97 ~i~fPlls-----D~--~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~  141 (222)
T PRK13189         97 EIEFPIIA-----DD--RGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAI  141 (222)
T ss_pred             CcceeEEE-----cC--ccHHHHHhCCCccccCCCceeEEEEECCCCeEEEE
Confidence            23432222     22  23455567764       46999999999998644

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=96.39  E-value=0.013  Score=52.25  Aligned_cols=68  Identities=13%  Similarity=0.081  Sum_probs=46.5

Q ss_pred             cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+|.|.+.||++|.  .+.|. +.++.     .+  ++|+-+ |.     |++.                      
T Consensus        14 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-----~~--v~~~~v-d~-----d~~~----------------------   58 (103)
T cd02985          14 KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-----ND--VVFLLV-NG-----DEND----------------------   58 (103)
T ss_pred             CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-----CC--CEEEEE-EC-----CCCh----------------------
Confidence            489999999999998885  36677 66654     12  455544 21     2211                      


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                        ..+.+.+.|++++.|+++++ .+|+++
T Consensus        59 --~~~~l~~~~~V~~~Pt~~~~-~~G~~v   84 (103)
T cd02985          59 --STMELCRREKIIEVPHFLFY-KDGEKI   84 (103)
T ss_pred             --HHHHHHHHcCCCcCCEEEEE-eCCeEE
Confidence              12345577899999998777 789876

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=96.05  E-value=0.03  Score=48.42  Aligned_cols=66  Identities=9%  Similarity=0.066  Sum_probs=46.6

Q ss_pred             cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+++|.+.||++|.  .+.|. +++..+    +.  +.++-+ |-     |..                       
T Consensus        11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~----~~--~~~~~v-d~-----~~~-----------------------   55 (96)
T cd02956          11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ----GQ--FVLAKV-NC-----DAQ-----------------------   55 (96)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhC----Cc--EEEEEE-ec-----cCC-----------------------
Confidence            478999999999999885  35677 776653    22  445544 21     111                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                          +.+.+.|++++.|++++++ +|+.+
T Consensus        56 ----~~l~~~~~i~~~Pt~~~~~-~g~~~   79 (96)
T cd02956          56 ----PQIAQQFGVQALPTVYLFA-AGQPV   79 (96)
T ss_pred             ----HHHHHHcCCCCCCEEEEEe-CCEEe
Confidence                1356679999999999997 89875

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=95.78  E-value=0.016  Score=51.78  Aligned_cols=66  Identities=8%  Similarity=-0.061  Sum_probs=45.6

Q ss_pred             ceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCC
Q 044391          330 EVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPT  406 (691)
Q Consensus       330 s~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d  406 (691)
                      +.++||.|++.|.+.||++|.  .+.|. +.++.+     ++  .++-+ |       .+.               .+  
T Consensus        14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-----~~--~~~~v-d-------~~~---------------~~--   61 (100)
T cd02999          14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP-----QI--RHLAI-E-------ESS---------------IK--   61 (100)
T ss_pred             HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-----cC--ceEEE-E-------CCC---------------CC--
Confidence            357899999999999998874  46777 777653     23  34443 3       110               11  


Q ss_pred             CCchHHHHHHHHhhCcCCceEEEEeCCC
Q 044391          407 IIEPAVVKYAKEVWKFSKKAILVPVDPQ  434 (691)
Q Consensus       407 ~i~~~~~r~ike~f~~~~iP~LVvL~pq  434 (691)
                             ..+.+.|++++.|+++++++.
T Consensus        62 -------~~l~~~~~V~~~PT~~lf~~g   82 (100)
T cd02999          62 -------PSLLSRYGVVGFPTILLFNST   82 (100)
T ss_pred             -------HHHHHhcCCeecCEEEEEcCC
Confidence                   145577999999999999754

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=95.74  E-value=0.042  Score=48.21  Aligned_cols=66  Identities=12%  Similarity=0.067  Sum_probs=46.7

Q ss_pred             cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .+|.|+++|++.||+.|.  .+.|. +.+++.    .++.++.|-+        |++.                      
T Consensus        12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~----~~v~~~~id~--------d~~~----------------------   57 (97)
T cd02949          12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFD----GAVHFVEIDI--------DEDQ----------------------   57 (97)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHhC----CceEEEEEEC--------CCCH----------------------
Confidence            378999999999998875  36787 877764    2455555432        2111                      


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                           -+.+.+++.+.|+++++. +|+++
T Consensus        58 -----~l~~~~~v~~vPt~~i~~-~g~~v   80 (97)
T cd02949          58 -----EIAEAAGIMGTPTVQFFK-DKELV   80 (97)
T ss_pred             -----HHHHHCCCeeccEEEEEE-CCeEE
Confidence                 134568999999999995 78887

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PRK10996 thioredoxin 2; Provisional

Probab=95.53  E-value=0.048  Score=51.64  Aligned_cols=68  Identities=6%  Similarity=0.088  Sum_probs=47.3

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      ++|.|+|+|++.||++|.-  +.|. ++++..    .+  +.|+-+ |.     |..                       
T Consensus        51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~----~~--v~~~~v-d~-----~~~-----------------------   95 (139)
T PRK10996         51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS----GK--VRFVKV-NT-----EAE-----------------------   95 (139)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC----CC--eEEEEE-eC-----CCC-----------------------
Confidence            4899999999999988753  5677 777653    23  555544 21     110                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                          ..+.+.|++++.|+++++. +|+.+..
T Consensus        96 ----~~l~~~~~V~~~Ptlii~~-~G~~v~~  121 (139)
T PRK10996         96 ----RELSARFRIRSIPTIMIFK-NGQVVDM  121 (139)
T ss_pred             ----HHHHHhcCCCccCEEEEEE-CCEEEEE
Confidence                1356678999999999885 8987753

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=95.49  E-value=0.028  Score=48.47  Aligned_cols=49  Identities=14%  Similarity=0.306  Sum_probs=38.2

Q ss_pred             CcEEEEEccCChhHH---HHHHHHHHHHHHHhC--CceeeEEecccChHHHHhhhh
Q 044391          490 ERYICLYGGGDIEWI---RRFTTSAKAVARAAQ--INLGMAYVGKNNAKERFRKIS  540 (691)
Q Consensus       490 gK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~--~~~E~v~Vgkdn~~e~v~~~~  540 (691)
                      ||+++|||.+  .||   +++.+.+.++.+..+  ..+++++|+.|...+..++.+
T Consensus         1 gK~~ll~fwa--~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~   54 (95)
T PF13905_consen    1 GKPVLLYFWA--SWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFL   54 (95)
T ss_dssp             TSEEEEEEE---TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHH
T ss_pred             CCEEEEEEEC--CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHH
Confidence            8999999999  555   889999999877755  899999999997666665544

...

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=95.42  E-value=0.047  Score=51.34  Aligned_cols=77  Identities=12%  Similarity=0.133  Sum_probs=53.0

Q ss_pred             cCcEEEEEEec-------CCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeee
Q 044391          333 RRKHVLLLISS-------LDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTV  402 (691)
Q Consensus       333 ~gK~VlL~fSa-------l~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAV  402 (691)
                      +||.|.++|+|       .||++|..  ++|. +.++.+    .+..++.|=+ |....|.|.                 
T Consensus        20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~----~~v~fv~Vdv-d~~~~w~d~-----------------   77 (119)
T cd02952          20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP----EDCVFIYCDV-GDRPYWRDP-----------------   77 (119)
T ss_pred             CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC----CCCEEEEEEc-CCcccccCc-----------------
Confidence            47899999999       99999864  6788 777754    2366666642 221112221                 


Q ss_pred             cCCCCCchHHHHHHHHhhCcC-CceEEEEeCCCCceeccc
Q 044391          403 QHPTIIEPAVVKYAKEVWKFS-KKAILVPVDPQGRILNQN  441 (691)
Q Consensus       403 p~~d~i~~~~~r~ike~f~~~-~iP~LVvL~pqGkv~~~N  441 (691)
                                ...++..++++ ++|+++++...++++..|
T Consensus        78 ----------~~~~~~~~~I~~~iPT~~~~~~~~~l~~~~  107 (119)
T cd02952          78 ----------NNPFRTDPKLTTGVPTLLRWKTPQRLVEDE  107 (119)
T ss_pred             ----------chhhHhccCcccCCCEEEEEcCCceecchh
Confidence                      12334568888 999999999888888766

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=95.27  E-value=0.071  Score=48.33  Aligned_cols=71  Identities=11%  Similarity=-0.017  Sum_probs=49.3

Q ss_pred             eecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCC
Q 044391          331 VLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTI  407 (691)
Q Consensus       331 ~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~  407 (691)
                      ...||.|+++|.+.||++|.  .+.+. +.++++.   .+  +.+.-+ |.     |.+                     
T Consensus        21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~---~~--v~~~~v-d~-----d~~---------------------   68 (111)
T cd02963          21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP---LG--VGIATV-NA-----GHE---------------------   68 (111)
T ss_pred             ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh---cC--ceEEEE-ec-----ccc---------------------
Confidence            34689999999999998875  36788 8888752   22  444433 21     211                     


Q ss_pred             CchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          408 IEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       408 i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                            +.+.+.|++++.|+++++ ++|+.+..
T Consensus        69 ------~~l~~~~~V~~~Pt~~i~-~~g~~~~~   94 (111)
T cd02963          69 ------RRLARKLGAHSVPAIVGI-INGQVTFY   94 (111)
T ss_pred             ------HHHHHHcCCccCCEEEEE-ECCEEEEE
Confidence                  134567899999999999 58887643

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=95.25  E-value=0.048  Score=47.20  Aligned_cols=66  Identities=9%  Similarity=0.035  Sum_probs=44.8

Q ss_pred             EEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHH
Q 044391          336 HVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAV  412 (691)
Q Consensus       336 ~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~  412 (691)
                      .|+|+|.+.||++|.  .+.+. ++++.+.. ..++.++-|   |       .+.                .        
T Consensus        18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~~~~v---d-------~~~----------------~--------   62 (102)
T cd03005          18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNE-NPSVKIAKV---D-------CTQ----------------H--------   62 (102)
T ss_pred             CEEEEEECCCCHHHHHhCHHHHHHHHHHhcc-CCcEEEEEE---E-------CCC----------------C--------
Confidence            499999999998875  46788 88887641 234555444   2       110                0        


Q ss_pred             HHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          413 VKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       413 ~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                       ..+.+.|++++.|+++++ ++|+.+
T Consensus        63 -~~~~~~~~v~~~Pt~~~~-~~g~~~   86 (102)
T cd03005          63 -RELCSEFQVRGYPTLLLF-KDGEKV   86 (102)
T ss_pred             -hhhHhhcCCCcCCEEEEE-eCCCee
Confidence             123456899999999999 678754

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=95.24  E-value=0.24  Score=50.57  Aligned_cols=114  Identities=14%  Similarity=0.239  Sum_probs=74.3

Q ss_pred             ceecCCCCceeecceecCcEEEEEEecCCC---ChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH
Q 044391          317 PVVDGSSRTRVNIEVLRRKHVLLLISSLDL---SDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ  392 (691)
Q Consensus       317 ~l~~g~~~~kV~Is~L~gK~VlL~fSal~~---~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~  392 (691)
                      +-+....|+++....|+||.+++||.=--|   ||-.+..|. +.++|.+..+.++.+|+|++ |   ++.|. .+.-++
T Consensus        50 f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itv-D---PerDt-p~~lk~  124 (207)
T COG1999          50 FELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITV-D---PERDT-PEVLKK  124 (207)
T ss_pred             eeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEE-C---CCCCC-HHHHHH
Confidence            445556777899999999999999996666   555667788 99999854489999999996 6   44444 233344


Q ss_pred             Hhc---CCCeeeecCCCCCchHHHHHHHHhhCc---------------CCceEEEEeCCCCceec
Q 044391          393 LQA---MMPWYTVQHPTIIEPAVVKYAKEVWKF---------------SKKAILVPVDPQGRILN  439 (691)
Q Consensus       393 ~~~---~MPWyAVp~~d~i~~~~~r~ike~f~~---------------~~iP~LVvL~pqGkv~~  439 (691)
                      |-.   .=+|--+--+    .+.++.+...|++               .+-..+.++||+|++..
T Consensus       125 Y~~~~~~~~~~~ltg~----~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~  185 (207)
T COG1999         125 YAELNFDPRWIGLTGT----PEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLG  185 (207)
T ss_pred             HhcccCCCCeeeeeCC----HHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEE
Confidence            433   1124444432    1333333333333               33456788899998764

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=95.24  E-value=0.082  Score=47.04  Aligned_cols=66  Identities=3%  Similarity=0.015  Sum_probs=44.8

Q ss_pred             cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .||.|+|+|.+.||++|.  .+.|. ++++.+   +..  +.|+-+ |.     | ..                      
T Consensus        16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~---~~~--~~~~~v-d~-----d-~~----------------------   61 (102)
T cd02948          16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELG---DDL--LHFATA-EA-----D-TI----------------------   61 (102)
T ss_pred             cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcC---CCc--EEEEEE-eC-----C-CH----------------------
Confidence            388999999999999885  36788 888764   222  344433 21     2 10                      


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                       +    +.+.|++++.|+++++. +|+.+
T Consensus        62 -~----~~~~~~v~~~Pt~~~~~-~g~~~   84 (102)
T cd02948          62 -D----TLKRYRGKCEPTFLFYK-NGELV   84 (102)
T ss_pred             -H----HHHHcCCCcCcEEEEEE-CCEEE
Confidence             1    23668999999998885 77655

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PTZ00051 thioredoxin; Provisional

Probab=95.23  E-value=0.058  Score=46.70  Aligned_cols=65  Identities=9%  Similarity=0.050  Sum_probs=45.1

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|+|+|.+.||++|.-  +.|. +.++.     .  ++.++.+ |       .++                       
T Consensus        18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~-----~--~~~~~~v-d-------~~~-----------------------   59 (98)
T PTZ00051         18 NELVIVDFYAEWCGPCKRIAPFYEECSKEY-----T--KMVFVKV-D-------VDE-----------------------   59 (98)
T ss_pred             CCeEEEEEECCCCHHHHHHhHHHHHHHHHc-----C--CcEEEEE-E-------Ccc-----------------------
Confidence            789999999999988753  4566 55532     1  3666665 2       111                       


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                        ...+.+.|++++.|+++++ .+|+.+.
T Consensus        60 --~~~~~~~~~v~~~Pt~~~~-~~g~~~~   85 (98)
T PTZ00051         60 --LSEVAEKENITSMPTFKVF-KNGSVVD   85 (98)
T ss_pred             --hHHHHHHCCCceeeEEEEE-eCCeEEE
Confidence              1235677999999998877 6888773

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=95.14  E-value=0.032  Score=53.39  Aligned_cols=91  Identities=13%  Similarity=0.209  Sum_probs=59.9

Q ss_pred             cCcEEEEEEecCCCChhhhH---HHH---HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCC
Q 044391          333 RRKHVLLLISSLDLSDEEIL---VLH---LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPT  406 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~~---~L~---iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d  406 (691)
                      +||.|+|+|.+.||++|...   ++.   +-+.++    ++|  |.|.+..   +++|..          .+      ++
T Consensus        22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~----~~F--v~V~l~~---d~td~~----------~~------~~   76 (130)
T cd02960          22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ----EDF--IMLNLVH---ETTDKN----------LS------PD   76 (130)
T ss_pred             CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH----hCe--EEEEEEe---ccCCCC----------cC------cc
Confidence            38999999999999998542   222   344443    346  5555421   223311          00      01


Q ss_pred             CCchHHHHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCcccccCChhhHHHHHhh
Q 044391          407 IIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKA  467 (691)
Q Consensus       407 ~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~e~L~~~  467 (691)
                                    + .+.|+++++||+|+++.+    +.--++...|-+.+++.+.|.+-
T Consensus        77 --------------g-~~vPtivFld~~g~vi~~----i~Gy~~~~~~~y~~~~~~~~~~~  118 (130)
T cd02960          77 --------------G-QYVPRIMFVDPSLTVRAD----ITGRYSNRLYTYEPADIPLLIEN  118 (130)
T ss_pred             --------------C-cccCeEEEECCCCCCccc----ccccccCccceeCcCcHHHHHHH
Confidence                          1 368999999999998864    35678888898889988887654

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=95.01  E-value=0.19  Score=49.63  Aligned_cols=106  Identities=18%  Similarity=0.222  Sum_probs=71.4

Q ss_pred             ceecCCCCceeecceecCcEEEEEEecCCC-Chh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH
Q 044391          317 PVVDGSSRTRVNIEVLRRKHVLLLISSLDL-SDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ  392 (691)
Q Consensus       317 ~l~~g~~~~kV~Is~L~gK~VlL~fSal~~-~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~  392 (691)
                      +-+-+.++..|.+++++||.|.|||=-.+. |.|  |..-+. .|+++++   -+.+|+=||. |     +-...++|.+
T Consensus        13 F~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~---~~a~V~GIS~-D-----s~~~~~~F~~   83 (157)
T COG1225          13 FELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEK---LGAVVLGISP-D-----SPKSHKKFAE   83 (157)
T ss_pred             eEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHh---CCCEEEEEeC-C-----CHHHHHHHHH
Confidence            444556677799999999999999987774 334  445577 8888763   4799999995 5     3667788976


Q ss_pred             HhcCCCeeeecCCCCCchHHHHHHHHhhCcC------------CceEEEEeCCCCceec
Q 044391          393 LQAMMPWYTVQHPTIIEPAVVKYAKEVWKFS------------KKAILVPVDPQGRILN  439 (691)
Q Consensus       393 ~~~~MPWyAVp~~d~i~~~~~r~ike~f~~~------------~iP~LVvL~pqGkv~~  439 (691)
                      -+ .     ++|+=+.|...  .+.+.|++-            -+++-.|||+||++..
T Consensus        84 k~-~-----L~f~LLSD~~~--~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~  134 (157)
T COG1225          84 KH-G-----LTFPLLSDEDG--EVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRY  134 (157)
T ss_pred             Hh-C-----CCceeeECCcH--HHHHHhCcccccccCccccccccceEEEECCCCeEEE
Confidence            43 2     22321112221  244556652            3578899999999975

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=94.59  E-value=0.099  Score=46.32  Aligned_cols=65  Identities=8%  Similarity=-0.099  Sum_probs=45.6

Q ss_pred             ecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391          332 LRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII  408 (691)
Q Consensus       332 L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i  408 (691)
                      .+++.|+++|.+.||++|.  .+.|. ++++++.+ +  ..+.+..+ |       .+.                +    
T Consensus        13 ~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~-~--~~~~~~~v-d-------~~~----------------~----   61 (104)
T cd03000          13 RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSS-G--SPVRVGKL-D-------ATA----------------Y----   61 (104)
T ss_pred             ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhc-C--CcEEEEEE-E-------Ccc----------------C----
Confidence            3468999999999998875  47788 88887632 2  34556554 2       111                1    


Q ss_pred             chHHHHHHHHhhCcCCceEEEEeC
Q 044391          409 EPAVVKYAKEVWKFSKKAILVPVD  432 (691)
Q Consensus       409 ~~~~~r~ike~f~~~~iP~LVvL~  432 (691)
                           ..+.+.|++++.|+++++.
T Consensus        62 -----~~~~~~~~I~~~Pt~~l~~   80 (104)
T cd03000          62 -----SSIASEFGVRGYPTIKLLK   80 (104)
T ss_pred             -----HhHHhhcCCccccEEEEEc
Confidence                 1345679999999999994

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=94.52  E-value=0.13  Score=45.17  Aligned_cols=66  Identities=8%  Similarity=-0.123  Sum_probs=46.2

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      ||.|+|+|.+.||++|.-  +.+. +.++++    ..+.++.|-+        |.++                       
T Consensus        18 ~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~----~~~~~~~v~~--------~~~~-----------------------   62 (109)
T cd03002          18 NYTTLVEFYAPWCGHCKNLKPEYAKAAKELD----GLVQVAAVDC--------DEDK-----------------------   62 (109)
T ss_pred             CCeEEEEEECCCCHHHHhhChHHHHHHHHhc----CCceEEEEec--------Cccc-----------------------
Confidence            778999999999988753  5666 666654    3466666643        2110                       


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCc
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGR  436 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGk  436 (691)
                        .+.+.+.|++++.|+++++++.|+
T Consensus        63 --~~~~~~~~~i~~~Pt~~~~~~~~~   86 (109)
T cd03002          63 --NKPLCGKYGVQGFPTLKVFRPPKK   86 (109)
T ss_pred             --cHHHHHHcCCCcCCEEEEEeCCCc
Confidence              123456789999999999998874

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>PHA02278 thioredoxin-like protein

Probab=94.50  E-value=0.11  Score=47.39  Aligned_cols=70  Identities=16%  Similarity=0.335  Sum_probs=44.7

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +++.|+++|.|.||+||..  +.+. +-++.    ..+.+++.|=+        |.+  .++                  
T Consensus        13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~----~~~~~~~~vdv--------d~~--~~d------------------   60 (103)
T PHA02278         13 QKKDVIVMITQDNCGKCEILKSVIPMFQESG----DIKKPILTLNL--------DAE--DVD------------------   60 (103)
T ss_pred             CCCcEEEEEECCCCHHHHhHHHHHHHHHhhh----cCCceEEEEEC--------Ccc--ccc------------------
Confidence            5889999999999999864  4555 43331    22345566543        211  110                  


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                         ...+.+.|+++++|+++++. +|+.+
T Consensus        61 ---~~~l~~~~~I~~iPT~i~fk-~G~~v   85 (103)
T PHA02278         61 ---REKAVKLFDIMSTPVLIGYK-DGQLV   85 (103)
T ss_pred             ---cHHHHHHCCCccccEEEEEE-CCEEE
Confidence               11255679999999999996 46555

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=94.46  E-value=0.076  Score=61.68  Aligned_cols=71  Identities=14%  Similarity=0.046  Sum_probs=48.0

Q ss_pred             cCcEEEEEEecCCCChhhhH---HH--H-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCC
Q 044391          333 RRKHVLLLISSLDLSDEEIL---VL--H-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPT  406 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~~---~L--~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d  406 (691)
                      +||.|++.|.+.||++|...   ++  . +.++++     ++  +++-+ |    |++.+.                   
T Consensus       473 ~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-----~~--~~v~v-D----vt~~~~-------------------  521 (571)
T PRK00293        473 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-----DT--VLLQA-D----VTANNA-------------------  521 (571)
T ss_pred             cCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-----CC--EEEEE-E----CCCCCh-------------------
Confidence            48999999999999888542   12  2 444442     34  55544 3    444321                   


Q ss_pred             CCchHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          407 IIEPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       407 ~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                           ..+.+.++|++.+.|+++++|++|+.++
T Consensus       522 -----~~~~l~~~~~v~g~Pt~~~~~~~G~~i~  549 (571)
T PRK00293        522 -----EDVALLKHYNVLGLPTILFFDAQGQEIP  549 (571)
T ss_pred             -----hhHHHHHHcCCCCCCEEEEECCCCCCcc
Confidence                 1234566799999999999999999864

>PRK09381 trxA thioredoxin; Provisional

Probab=94.45  E-value=0.15  Score=45.24  Aligned_cols=66  Identities=11%  Similarity=0.034  Sum_probs=46.4

Q ss_pred             CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|+++|.+.||++|.  .+.|. +.++..    .++.+.-|-+        |...                       
T Consensus        21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~----~~~~~~~vd~--------~~~~-----------------------   65 (109)
T PRK09381         21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNI--------DQNP-----------------------   65 (109)
T ss_pred             CCeEEEEEECCCCHHHHHHhHHHHHHHHHhC----CCcEEEEEEC--------CCCh-----------------------
Confidence            78999999999998875  36788 887764    2354444422        2111                       


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          .+.+.|++++.|+++++ ++|+++.
T Consensus        66 ----~~~~~~~v~~~Pt~~~~-~~G~~~~   89 (109)
T PRK09381         66 ----GTAPKYGIRGIPTLLLF-KNGEVAA   89 (109)
T ss_pred             ----hHHHhCCCCcCCEEEEE-eCCeEEE
Confidence                13456899999999999 6898764

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=94.35  E-value=0.18  Score=45.38  Aligned_cols=68  Identities=12%  Similarity=0.108  Sum_probs=45.8

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|++.|.+.||++|.-  +.+. +.++++   +.++.+.-|-+        |.+.                      
T Consensus        20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~---~~~~~~~~vd~--------d~~~----------------------   66 (109)
T cd02993          20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLA---GSNVKVAKFNA--------DGEQ----------------------   66 (109)
T ss_pred             cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhc---cCCeEEEEEEC--------Cccc----------------------
Confidence            3799999999999988753  5677 777765   23455555432        2100                      


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCc
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGR  436 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGk  436 (691)
                         ..+.++.|++++.|+++++++.|+
T Consensus        67 ---~~~~~~~~~v~~~Pti~~f~~~~~   90 (109)
T cd02993          67 ---REFAKEELQLKSFPTILFFPKNSR   90 (109)
T ss_pred             ---hhhHHhhcCCCcCCEEEEEcCCCC
Confidence               112234589999999999988765

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=94.35  E-value=0.14  Score=45.64  Aligned_cols=70  Identities=13%  Similarity=0.053  Sum_probs=47.7

Q ss_pred             CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      ++.|+++|.+.||++|.  .+.+. +++++++...+.-.++|..+ |       .++                       
T Consensus        18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~v-d-------~d~-----------------------   66 (108)
T cd02996          18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKV-D-------CDK-----------------------   66 (108)
T ss_pred             CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEE-E-------CCC-----------------------
Confidence            67899999999998874  36787 88887643112123666654 2       111                       


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRI  437 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv  437 (691)
                        -+.+.+.|++++.|+++++ ++|+.
T Consensus        67 --~~~l~~~~~v~~~Ptl~~~-~~g~~   90 (108)
T cd02996          67 --ESDIADRYRINKYPTLKLF-RNGMM   90 (108)
T ss_pred             --CHHHHHhCCCCcCCEEEEE-eCCcC
Confidence              1235667899999999998 67874

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=94.34  E-value=0.15  Score=43.93  Aligned_cols=66  Identities=17%  Similarity=0.187  Sum_probs=45.4

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|+++|.+.||++|.-  +.|. +.+++      ...+.|+-+ |       .++                       
T Consensus        14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~------~~~i~~~~v-d-------~~~-----------------------   56 (97)
T cd02984          14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA------FPSVLFLSI-E-------AEE-----------------------   56 (97)
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHHHHHh------CCceEEEEE-c-------ccc-----------------------
Confidence            789999999999988752  4565 55554      125666654 2       111                       


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                        ...+.+.|++.+.|+++++. +|+.+.
T Consensus        57 --~~~~~~~~~i~~~Pt~~~~~-~g~~~~   82 (97)
T cd02984          57 --LPEISEKFEITAVPTFVFFR-NGTIVD   82 (97)
T ss_pred             --CHHHHHhcCCccccEEEEEE-CCEEEE
Confidence              12355668999999999995 888763

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=94.31  E-value=0.19  Score=44.11  Aligned_cols=65  Identities=11%  Similarity=-0.086  Sum_probs=42.7

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      ++|.|+++|.+.||++|.-  +.+. +-++++    ++  +.+.-+ |-     |+.                       
T Consensus        17 ~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~----~~--~~~~~v-d~-----~~~-----------------------   61 (101)
T cd03003          17 SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMD----GV--IRIGAV-NC-----GDD-----------------------   61 (101)
T ss_pred             CCCeEEEEEECCCChHHHHhHHHHHHHHHHhc----Cc--eEEEEE-eC-----Ccc-----------------------
Confidence            4689999999999988752  4555 555543    33  444433 21     111                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRI  437 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv  437 (691)
                          +.+.+.+++++.|+++++ ++|+.
T Consensus        62 ----~~~~~~~~v~~~Pt~~~~-~~g~~   84 (101)
T cd03003          62 ----RMLCRSQGVNSYPSLYVF-PSGMN   84 (101)
T ss_pred             ----HHHHHHcCCCccCEEEEE-cCCCC
Confidence                124566899999999999 78874

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PTZ00062 glutaredoxin; Provisional

Probab=94.27  E-value=0.53  Score=48.26  Aligned_cols=133  Identities=12%  Similarity=0.179  Sum_probs=76.7

Q ss_pred             cEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHHH
Q 044391          335 KHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVV  413 (691)
Q Consensus       335 K~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~~  413 (691)
                      +.+.|||++.||++|..  +. +.++|.+. -  -+|.|+.+        |++                           
T Consensus        18 g~~vl~f~a~w~~~C~~--m~~vl~~l~~~-~--~~~~F~~V--------~~d---------------------------   57 (204)
T PTZ00062         18 GKLVLYVKSSKEPEYEQ--LMDVCNALVED-F--PSLEFYVV--------NLA---------------------------   57 (204)
T ss_pred             CcEEEEEeCCCCcchHH--HHHHHHHHHHH-C--CCcEEEEE--------ccc---------------------------
Confidence            45799999999999863  34 55555432 1  24777776        322                           


Q ss_pred             HHHHHhhCcCCceEEEEeCCCCceec----ccHHHHHH---HhCcccccCChhhHHHHHhhhccchhhhcccCchhhhhh
Q 044391          414 KYAKEVWKFSKKAILVPVDPQGRILN----QNAFHMLW---IWGNLAFPFSAEKEAALWKAESWRLELLIDDIDATILEW  486 (691)
Q Consensus       414 r~ike~f~~~~iP~LVvL~pqGkv~~----~NA~~mI~---~wG~~AFPFT~~r~e~L~~~e~w~lelLvd~id~~I~~~  486 (691)
                            |++.++|++|++. +|+.+.    .|+..+..   .|-..     .. .           +    .+...+.++
T Consensus        58 ------~~V~~vPtfv~~~-~g~~i~r~~G~~~~~~~~~~~~~~~~-----~~-~-----------~----~~~~~v~~l  109 (204)
T PTZ00062         58 ------DANNEYGVFEFYQ-NSQLINSLEGCNTSTLVSFIRGWAQK-----GS-S-----------E----DTVEKIERL  109 (204)
T ss_pred             ------cCcccceEEEEEE-CCEEEeeeeCCCHHHHHHHHHHHcCC-----CC-H-----------H----HHHHHHHHH
Confidence                  7999999999995 555554    45544321   12110     00 0           0    022234455


Q ss_pred             hcCCcEEEEE--ccCChhHHHHHHHHHHHHHHHhCCceeeEEecccChHHHHhhhh
Q 044391          487 MKEERYICLY--GGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFRKIS  540 (691)
Q Consensus       487 i~egK~I~LY--gG~D~~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkdn~~e~v~~~~  540 (691)
                      |+..+ |.||  |.....|| .|..++..+=+..+++++.+-|.+|   +.+|.-+
T Consensus       110 i~~~~-Vvvf~Kg~~~~p~C-~~C~~~k~~L~~~~i~y~~~DI~~d---~~~~~~l  160 (204)
T PTZ00062        110 IRNHK-ILLFMKGSKTFPFC-RFSNAVVNMLNSSGVKYETYNIFED---PDLREEL  160 (204)
T ss_pred             HhcCC-EEEEEccCCCCCCC-hhHHHHHHHHHHcCCCEEEEEcCCC---HHHHHHH
Confidence            55544 4444  43444678 4555555554555999998888765   3444443

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=93.94  E-value=0.16  Score=47.68  Aligned_cols=70  Identities=7%  Similarity=-0.037  Sum_probs=45.2

Q ss_pred             cCcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchH
Q 044391          333 RRKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPA  411 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~  411 (691)
                      .+|.|++.|+|.||+||.  .+. +++++.++..+.  +.|+-+ |.     |+                          
T Consensus        13 ~~~~vVV~F~A~WCgpCk--~m~P~le~la~~~~~~--v~f~kV-Dv-----D~--------------------------   56 (114)
T cd02954          13 EEKVVVIRFGRDWDPVCM--QMDEVLAKIAEDVSNF--AVIYLV-DI-----DE--------------------------   56 (114)
T ss_pred             CCCEEEEEEECCCChhHH--HHHHHHHHHHHHccCc--eEEEEE-EC-----CC--------------------------
Confidence            367899999999999986  334 555554332222  334432 31     21                          


Q ss_pred             HHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          412 VVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       412 ~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                       ..-+.+.|+++++|+++++- +|+.+..
T Consensus        57 -~~~la~~~~V~~iPTf~~fk-~G~~v~~   83 (114)
T cd02954          57 -VPDFNKMYELYDPPTVMFFF-RNKHMKI   83 (114)
T ss_pred             -CHHHHHHcCCCCCCEEEEEE-CCEEEEE
Confidence             11345668999999999997 6877754

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>TIGR01068 thioredoxin thioredoxin

Probab=93.91  E-value=0.27  Score=41.88  Aligned_cols=65  Identities=15%  Similarity=0.096  Sum_probs=44.6

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|+++|.+.||++|.-  +.|. +.+++.    .+..++.|=.        |.+                        
T Consensus        14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~vd~--------~~~------------------------   57 (101)
T TIGR01068        14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE----GKVKFVKLNV--------DEN------------------------   57 (101)
T ss_pred             CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc----CCeEEEEEEC--------CCC------------------------
Confidence            679999999999988753  5566 555543    3466666632        111                        


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                         +.+.+.|++++.|+++++ ++|+++
T Consensus        58 ---~~~~~~~~v~~~P~~~~~-~~g~~~   81 (101)
T TIGR01068        58 ---PDIAAKYGIRSIPTLLLF-KNGKEV   81 (101)
T ss_pred             ---HHHHHHcCCCcCCEEEEE-eCCcEe
Confidence               123456899999999999 678754

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=93.89  E-value=0.29  Score=42.00  Aligned_cols=68  Identities=13%  Similarity=-0.026  Sum_probs=48.2

Q ss_pred             cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      ++|.+.++|.+.||++|.  .+.+. +.+..+..  .++.++.+.+        |++                       
T Consensus        12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~--~~~~~~~~d~--------~~~-----------------------   58 (102)
T TIGR01126        12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD--PDIVLAKVDA--------TAE-----------------------   58 (102)
T ss_pred             cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC--CceEEEEEEc--------cch-----------------------
Confidence            689999999999998874  36677 77776532  2455555432        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRI  437 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv  437 (691)
                          ..+.+.|++++.|++++++++|.+
T Consensus        59 ----~~~~~~~~i~~~P~~~~~~~~~~~   82 (102)
T TIGR01126        59 ----KDLASRFGVSGFPTIKFFPKGKKP   82 (102)
T ss_pred             ----HHHHHhCCCCcCCEEEEecCCCcc
Confidence                234566899999999999988863

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=93.59  E-value=0.2  Score=45.39  Aligned_cols=71  Identities=20%  Similarity=0.341  Sum_probs=44.6

Q ss_pred             cCcEEEEEEecCCCChhhhH---HHH---HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCC
Q 044391          333 RRKHVLLLISSLDLSDEEIL---VLH---LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPT  406 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~~---~L~---iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d  406 (691)
                      ++|.+++||.+.||++|...   +|.   +-+.+++    +|  |++.+ |    .++.+                    
T Consensus        16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~----~~--v~~~~-d----~~~~e--------------------   64 (114)
T cd02958          16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE----NF--IFWQC-D----IDSSE--------------------   64 (114)
T ss_pred             hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh----CE--EEEEe-c----CCCcc--------------------
Confidence            48999999999999887553   233   3333432    22  33322 2    11111                    


Q ss_pred             CCchHHHHHHHHhhCcCCceEEEEeCC-CCceecc
Q 044391          407 IIEPAVVKYAKEVWKFSKKAILVPVDP-QGRILNQ  440 (691)
Q Consensus       407 ~i~~~~~r~ike~f~~~~iP~LVvL~p-qGkv~~~  440 (691)
                           + +.+.+.+++++.|+++++|| +|+++..
T Consensus        65 -----~-~~~~~~~~~~~~P~~~~i~~~~g~~l~~   93 (114)
T cd02958          65 -----G-QRFLQSYKVDKYPHIAIIDPRTGEVLKV   93 (114)
T ss_pred             -----H-HHHHHHhCccCCCeEEEEeCccCcEeEE
Confidence                 1 12355578999999999999 7988753

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=93.53  E-value=1.8  Score=43.83  Aligned_cols=153  Identities=9%  Similarity=0.022  Sum_probs=77.8

Q ss_pred             CcEEEEEEe--cCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLIS--SLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fS--al~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      |+.|.+|++  +.||++|..  +. +++++.+. .++.+|.++-+        |.++                       
T Consensus        20 ~~~i~~f~~~~a~wC~~C~~--~~p~l~~la~~-~~~~~i~~v~v--------d~~~-----------------------   65 (215)
T TIGR02187        20 PVEIVVFTDNDKEGCQYCKE--TEQLLEELSEV-SPKLKLEIYDF--------DTPE-----------------------   65 (215)
T ss_pred             CeEEEEEcCCCCCCCCchHH--HHHHHHHHHhh-CCCceEEEEec--------CCcc-----------------------
Confidence            667777666  589999864  34 55565433 23577888865        2211                       


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceec--ccHHHHHHHhCcccccCChhhHHHHHhhhccchhhhcccCchhhhhh--
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILN--QNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDIDATILEW--  486 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~--~NA~~mI~~wG~~AFPFT~~r~e~L~~~e~w~lelLvd~id~~I~~~--  486 (691)
                        -+.+.+.|++++.|++++++. |+.+.  ..+..     +.+.  | .+.++++-.     ..-....+++...+.  
T Consensus        66 --~~~l~~~~~V~~~Pt~~~f~~-g~~~~~~~~G~~-----~~~~--l-~~~i~~~~~-----~~~~~~~L~~~~~~~l~  129 (215)
T TIGR02187        66 --DKEEAEKYGVERVPTTIILEE-GKDGGIRYTGIP-----AGYE--F-AALIEDIVR-----VSQGEPGLSEKTVELLQ  129 (215)
T ss_pred             --cHHHHHHcCCCccCEEEEEeC-CeeeEEEEeecC-----CHHH--H-HHHHHHHHH-----hcCCCCCCCHHHHHHHH
Confidence              113455689999999999974 54432  11110     0000  0 000111100     000001133322111  


Q ss_pred             -hcCCcEEEEEccCChhHHHHHHHHHHHHHHHhCCceeeEEecccChHHHHh
Q 044391          487 -MKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFR  537 (691)
Q Consensus       487 -i~egK~I~LYgG~D~~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkdn~~e~v~  537 (691)
                       .+.+..|-+|....=.+|+..-+.+.+++.. ...+.++.|..+...+.++
T Consensus       130 ~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~-~~~i~~~~vD~~~~~~~~~  180 (215)
T TIGR02187       130 SLDEPVRIEVFVTPTCPYCPYAVLMAHKFALA-NDKILGEMIEANENPDLAE  180 (215)
T ss_pred             hcCCCcEEEEEECCCCCCcHHHHHHHHHHHHh-cCceEEEEEeCCCCHHHHH
Confidence             3345566666554335567777788888766 4456666666665444443

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=93.41  E-value=0.13  Score=49.96  Aligned_cols=52  Identities=17%  Similarity=0.261  Sum_probs=40.6

Q ss_pred             hhhhcCCcEEEEEccCChhHH---HHHHHHHHHHHHHh--------CCceeeEEecccChHHHHhhh
Q 044391          484 LEWMKEERYICLYGGGDIEWI---RRFTTSAKAVARAA--------QINLGMAYVGKNNAKERFRKI  539 (691)
Q Consensus       484 ~~~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a--------~~~~E~v~Vgkdn~~e~v~~~  539 (691)
                      +++  .||.+.|||++  .||   ++|++.+.++.++.        +..||+++|+.|...+.+++.
T Consensus        21 s~~--kgk~vlL~FwA--sWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f   83 (146)
T cd03008          21 ARL--ENRVLLLFFGA--VVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESF   83 (146)
T ss_pred             HHh--CCCEEEEEEEC--CCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHH
Confidence            355  89999999999  786   99999998875531        236999999998665555554

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=93.38  E-value=0.32  Score=42.45  Aligned_cols=66  Identities=3%  Similarity=-0.074  Sum_probs=41.8

Q ss_pred             ecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391          332 LRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII  408 (691)
Q Consensus       332 L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i  408 (691)
                      ++|+ ++|+|.+.||++|.  .+.+. +.+..+   +.++.+.-|..        |++.                     
T Consensus        15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~---~~~v~~~~vd~--------~~~~---------------------   61 (101)
T cd02994          15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSD---DLGINVAKVDV--------TQEP---------------------   61 (101)
T ss_pred             hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhc---cCCeEEEEEEc--------cCCH---------------------
Confidence            4566 67999999998874  35666 655432   22344443321        1111                     


Q ss_pred             chHHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391          409 EPAVVKYAKEVWKFSKKAILVPVDPQGRI  437 (691)
Q Consensus       409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv  437 (691)
                            .+.+.|++++.|+++++ ++|++
T Consensus        62 ------~~~~~~~i~~~Pt~~~~-~~g~~   83 (101)
T cd02994          62 ------GLSGRFFVTALPTIYHA-KDGVF   83 (101)
T ss_pred             ------hHHHHcCCcccCEEEEe-CCCCE
Confidence                  14566899999999886 88874

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=92.71  E-value=0.28  Score=42.27  Aligned_cols=67  Identities=16%  Similarity=0.031  Sum_probs=45.6

Q ss_pred             CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|+++|.+.||++|.  .+.+. +.++++.  ..+  +.++.+ |       .+++               +      
T Consensus        18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~--~~~~~i-d-------~~~~---------------~------   64 (105)
T cd02998          18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN--EDD--VVIAKV-D-------ADEA---------------N------   64 (105)
T ss_pred             CCcEEEEEECCCCHHHHhhChHHHHHHHHhCC--CCC--EEEEEE-E-------CCCc---------------c------
Confidence            67899999999998874  36677 7777652  123  555554 2       1110               1      


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCc
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGR  436 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGk  436 (691)
                         ..+.+.|++++.|+++++++.|+
T Consensus        65 ---~~~~~~~~i~~~P~~~~~~~~~~   87 (105)
T cd02998          65 ---KDLAKKYGVSGFPTLKFFPKGST   87 (105)
T ss_pred             ---hhhHHhCCCCCcCEEEEEeCCCC
Confidence               13455689999999999998764

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=92.45  E-value=0.53  Score=41.33  Aligned_cols=65  Identities=6%  Similarity=-0.158  Sum_probs=41.5

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|+++|.+.||++|.-  +.+. +-++.    +....+.-|   |       .+                   .    
T Consensus        19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~----~~~~~~~~v---d-------~~-------------------~----   61 (104)
T cd03004          19 KEPWLVDFYAPWCGPCQALLPELRKAARAL----KGKVKVGSV---D-------CQ-------------------K----   61 (104)
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHh----cCCcEEEEE---E-------CC-------------------c----
Confidence            679999999999988753  4444 44443    223333333   2       11                   0    


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRI  437 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv  437 (691)
                        .+.+.+.+++++.|+++++.+.|+.
T Consensus        62 --~~~~~~~~~i~~~Pt~~~~~~g~~~   86 (104)
T cd03004          62 --YESLCQQANIRAYPTIRLYPGNASK   86 (104)
T ss_pred             --hHHHHHHcCCCcccEEEEEcCCCCC
Confidence              1235566899999999999876454

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=92.38  E-value=0.66  Score=38.93  Aligned_cols=65  Identities=9%  Similarity=-0.061  Sum_probs=44.1

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      ++.++++|.+.||++|.-  +.+. +.+.++.  +.++.++=|..        +  +                       
T Consensus        15 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~~~v~~--------~--~-----------------------   59 (101)
T cd02961          15 SKDVLVEFYAPWCGHCKALAPEYEKLAKELKG--DGKVVVAKVDC--------T--A-----------------------   59 (101)
T ss_pred             CCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc--CCceEEEEeec--------c--c-----------------------
Confidence            558999999999988743  5677 7777641  23344433321        1  1                       


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCC
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQG  435 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqG  435 (691)
                        -..+.+.+++++.|++++++++|
T Consensus        60 --~~~~~~~~~i~~~Pt~~~~~~~~   82 (101)
T cd02961          60 --NNDLCSEYGVRGYPTIKLFPNGS   82 (101)
T ss_pred             --hHHHHHhCCCCCCCEEEEEcCCC
Confidence              12445668999999999999886

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=91.98  E-value=0.62  Score=42.66  Aligned_cols=62  Identities=10%  Similarity=0.033  Sum_probs=39.6

Q ss_pred             CcEEEEEEecCCCChhhh--HHHHHHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchH
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLHLYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPA  411 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~  411 (691)
                      ++.|.++|++.||++|..  ++|.   ++... .+..+++.|=+        |+.                         
T Consensus        22 ~~~vvv~f~a~wC~~C~~~~~~l~---~la~~-~~~i~~~~vd~--------d~~-------------------------   64 (113)
T cd02975          22 PVDLVVFSSKEGCQYCEVTKQLLE---ELSEL-SDKLKLEIYDF--------DED-------------------------   64 (113)
T ss_pred             CeEEEEEeCCCCCCChHHHHHHHH---HHHHh-cCceEEEEEeC--------CcC-------------------------
Confidence            566899999999999853  4455   33222 12355555422        210                         


Q ss_pred             HHHHHHHhhCcCCceEEEEeCCC
Q 044391          412 VVKYAKEVWKFSKKAILVPVDPQ  434 (691)
Q Consensus       412 ~~r~ike~f~~~~iP~LVvL~pq  434 (691)
                        +.+.+.|++++.|++++++..
T Consensus        65 --~~l~~~~~v~~vPt~~i~~~g   85 (113)
T cd02975          65 --KEKAEKYGVERVPTTIFLQDG   85 (113)
T ss_pred             --HHHHHHcCCCcCCEEEEEeCC
Confidence              125566899999999999753

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=91.89  E-value=1.2  Score=40.35  Aligned_cols=86  Identities=14%  Similarity=0.174  Sum_probs=53.5

Q ss_pred             CcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHH
Q 044391          334 RKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAV  412 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~  412 (691)
                      ++.|+++|.+.||++|..  +. +++++-++. .+  +.|+-+ |       .++                       . 
T Consensus        24 ~~~vvv~F~a~~c~~C~~--l~~~l~~la~~~-~~--v~f~~v-d-------~~~-----------------------~-   66 (113)
T cd02957          24 GTRVVVHFYEPGFPRCKI--LDSHLEELAAKY-PE--TKFVKI-N-------AEK-----------------------A-   66 (113)
T ss_pred             CCEEEEEEeCCCCCcHHH--HHHHHHHHHHHC-CC--cEEEEE-E-------chh-----------------------h-
Confidence            589999999999998863  33 444443321 12  445543 2       111                       1 


Q ss_pred             HHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCcccccCChhhHHH
Q 044391          413 VKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAA  463 (691)
Q Consensus       413 ~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~e~  463 (691)
                        .|.+.|++++.|+++++. +|+.+.. -.+.....|   ..|+...++.
T Consensus        67 --~l~~~~~i~~~Pt~~~f~-~G~~v~~-~~G~~~~~~---~~~~~~~l~~  110 (113)
T cd02957          67 --FLVNYLDIKVLPTLLVYK-NGELIDN-IVGFEELGG---DDFTTEDLEK  110 (113)
T ss_pred             --HHHHhcCCCcCCEEEEEE-CCEEEEE-EecHHHhCC---CCCCHHHHHH
Confidence              455678999999998885 6777642 223344455   6777666654

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=91.51  E-value=0.72  Score=37.71  Aligned_cols=61  Identities=15%  Similarity=0.049  Sum_probs=40.7

Q ss_pred             cEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchH
Q 044391          335 KHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPA  411 (691)
Q Consensus       335 K~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~  411 (691)
                      |.++|+|.+.||+.|.-  ..|. +.++     ..++.++.|..        +.                          
T Consensus        11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~-----~~~~~~~~i~~--------~~--------------------------   51 (93)
T cd02947          11 KPVVVDFWAPWCGPCKAIAPVLEELAEE-----YPKVKFVKVDV--------DE--------------------------   51 (93)
T ss_pred             CcEEEEEECCCChhHHHhhHHHHHHHHH-----CCCceEEEEEC--------CC--------------------------
Confidence            88999999999988742  3444 4433     34577777653        11                          


Q ss_pred             HHHHHHHhhCcCCceEEEEeCCCCc
Q 044391          412 VVKYAKEVWKFSKKAILVPVDPQGR  436 (691)
Q Consensus       412 ~~r~ike~f~~~~iP~LVvL~pqGk  436 (691)
                       .+.+.+.|++.+.|+++++. +|+
T Consensus        52 -~~~~~~~~~v~~~P~~~~~~-~g~   74 (93)
T cd02947          52 -NPELAEEYGVRSIPTFLFFK-NGK   74 (93)
T ss_pred             -ChhHHHhcCcccccEEEEEE-CCE
Confidence             11234458999999999995 555

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=91.28  E-value=0.34  Score=41.54  Aligned_cols=65  Identities=11%  Similarity=0.030  Sum_probs=42.8

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|+++|.+.||++|..  +.|. +-++.+    .++.++-|-+        ++                         
T Consensus        17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~----~~v~~~~vd~--------~~-------------------------   59 (103)
T PF00085_consen   17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYK----DNVKFAKVDC--------DE-------------------------   59 (103)
T ss_dssp             SSEEEEEEESTTSHHHHHHHHHHHHHHHHTT----TTSEEEEEET--------TT-------------------------
T ss_pred             CCCEEEEEeCCCCCccccccceecccccccc----cccccchhhh--------hc-------------------------
Confidence            689999999999988854  4455 544433    2444444422        11                         


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRI  437 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv  437 (691)
                        -+.+.+.|++++.|+++++...+.+
T Consensus        60 --~~~l~~~~~v~~~Pt~~~~~~g~~~   84 (103)
T PF00085_consen   60 --NKELCKKYGVKSVPTIIFFKNGKEV   84 (103)
T ss_dssp             --SHHHHHHTTCSSSSEEEEEETTEEE
T ss_pred             --cchhhhccCCCCCCEEEEEECCcEE
Confidence              1335567899999999999654444

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=91.26  E-value=0.52  Score=40.79  Aligned_cols=70  Identities=17%  Similarity=0.126  Sum_probs=44.8

Q ss_pred             cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +++.++++|.+.||++|.  .+.+. +.++++..  .  .++++-+ |-    ++ +                .+     
T Consensus        16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~--~--~~~~~~i-d~----~~-~----------------~~-----   64 (104)
T cd02997          16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKED--G--KGVLAAV-DC----TK-P----------------EH-----   64 (104)
T ss_pred             hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC--C--ceEEEEE-EC----CC-C----------------cc-----
Confidence            367899999999998875  46777 87777532  2  3445433 21    11 0                00     


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                          ..+.+.+++++.|++++. ++|+.+
T Consensus        65 ----~~~~~~~~i~~~Pt~~~~-~~g~~~   88 (104)
T cd02997          65 ----DALKEEYNVKGFPTFKYF-ENGKFV   88 (104)
T ss_pred             ----HHHHHhCCCccccEEEEE-eCCCee
Confidence                124456899999998776 478754

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=90.51  E-value=0.89  Score=42.48  Aligned_cols=36  Identities=8%  Similarity=0.047  Sum_probs=26.8

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEec
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPI  375 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpi  375 (691)
                      |+.+.+||++.|||+|..  ++|. +=++      .+.+|.+|-+
T Consensus        23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~------~~~~~y~vdv   61 (122)
T TIGR01295        23 KETATFFIGRKTCPYCRKFSGTLSGVVAQ------TKAPIYYIDS   61 (122)
T ss_pred             CCcEEEEEECCCChhHHHHhHHHHHHHHh------cCCcEEEEEC
Confidence            788999999999999864  6676 4333      3366888864

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>PTZ00102 disulphide isomerase; Provisional

Probab=90.44  E-value=0.58  Score=51.92  Aligned_cols=68  Identities=18%  Similarity=0.048  Sum_probs=44.9

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .||.|+|+|.+.||++|.-  +.+. +-++.+.  ...+-+++|-.        |...                      
T Consensus       374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~v~~~~id~--------~~~~----------------------  421 (477)
T PTZ00102        374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD--NDSIIVAKMNG--------TANE----------------------  421 (477)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCcEEEEEEEC--------CCCc----------------------
Confidence            4899999999999988753  5555 5544432  23455555532        1111                      


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRI  437 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv  437 (691)
                           .+.+.|++++.|+++++++.|++
T Consensus       422 -----~~~~~~~v~~~Pt~~~~~~~~~~  444 (477)
T PTZ00102        422 -----TPLEEFSWSAFPTILFVKAGERT  444 (477)
T ss_pred             -----cchhcCCCcccCeEEEEECCCcc
Confidence                 01345789999999999987775

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=89.80  E-value=1.4  Score=38.20  Aligned_cols=62  Identities=5%  Similarity=-0.183  Sum_probs=41.1

Q ss_pred             CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      ++.|+|+|.+.||++|.  .+.+. +.++.+    ..+.+.-+   |       .+.                       
T Consensus        18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~----~~~~~~~i---d-------~~~-----------------------   60 (103)
T cd03001          18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALK----GIVKVGAV---D-------ADV-----------------------   60 (103)
T ss_pred             CCcEEEEEECCCCHHHHHHhHHHHHHHHHhc----CCceEEEE---E-------Ccc-----------------------
Confidence            56699999999998774  35676 666654    23444443   2       111                       


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCC
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQ  434 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pq  434 (691)
                        ...+.+.|++++.|+++++++.
T Consensus        61 --~~~~~~~~~i~~~P~~~~~~~~   82 (103)
T cd03001          61 --HQSLAQQYGVRGFPTIKVFGAG   82 (103)
T ss_pred             --hHHHHHHCCCCccCEEEEECCC
Confidence              1234567899999999999755

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=89.77  E-value=1.8  Score=39.54  Aligned_cols=75  Identities=11%  Similarity=-0.038  Sum_probs=46.4

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|+++|.+.||++|..  +.+. +.++++.. .+   .|-+..||-     +.+.                       
T Consensus        19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~-~~---~v~~~~vd~-----~~~~-----------------------   66 (114)
T cd02992          19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKW-RP---VVRVAAVDC-----ADEE-----------------------   66 (114)
T ss_pred             CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhc-CC---ceEEEEEec-----cchh-----------------------
Confidence            579999999999988753  5677 77776532 11   233333331     1110                       


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceecccHH
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILNQNAF  443 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~  443 (691)
                        ...+.+.|++++.|+++++.+.+ ....++.
T Consensus        67 --~~~~~~~~~i~~~Pt~~lf~~~~-~~~~~~~   96 (114)
T cd02992          67 --NVALCRDFGVTGYPTLRYFPPFS-KEATDGL   96 (114)
T ss_pred             --hHHHHHhCCCCCCCEEEEECCCC-ccCCCCC
Confidence              12345568999999999996544 5555443

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>smart00594 UAS UAS domain

Probab=89.76  E-value=1.1  Score=41.39  Aligned_cols=67  Identities=19%  Similarity=0.338  Sum_probs=43.3

Q ss_pred             ecCcEEEEEEecCCCChhhhH---HHH---HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCC
Q 044391          332 LRRKHVLLLISSLDLSDEEIL---VLH---LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHP  405 (691)
Q Consensus       332 L~gK~VlL~fSal~~~~~e~~---~L~---iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~  405 (691)
                      =+||.+++||.+.||++|...   +|.   +-+-+++    +  .|.+.. |    +++.+                   
T Consensus        25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~----~--fv~~~~-d----v~~~e-------------------   74 (122)
T smart00594       25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE----N--FIFWQV-D----VDTSE-------------------   74 (122)
T ss_pred             hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc----C--EEEEEe-c----CCChh-------------------
Confidence            358999999999999876542   232   3344432    2  444433 2    22211                   


Q ss_pred             CCCchHHHHHHHHhhCcCCceEEEEeCCCC
Q 044391          406 TIIEPAVVKYAKEVWKFSKKAILVPVDPQG  435 (691)
Q Consensus       406 d~i~~~~~r~ike~f~~~~iP~LVvL~pqG  435 (691)
                            + ..+.+.+++.+-|.+++++|+|
T Consensus        75 ------g-~~l~~~~~~~~~P~~~~l~~~~   97 (122)
T smart00594       75 ------G-QRVSQFYKLDSFPYVAIVDPRT   97 (122)
T ss_pred             ------H-HHHHHhcCcCCCCEEEEEecCC
Confidence                  1 3456668999999999999997

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=89.26  E-value=0.96  Score=41.47  Aligned_cols=65  Identities=11%  Similarity=0.243  Sum_probs=42.6

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      ++.|.++|.+.||++|..  +.|. +-++.     .+  +.|+-| |       .++                       
T Consensus        22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~-----~~--i~f~~V-d-------~~~-----------------------   63 (113)
T cd02989          22 SERVVCHFYHPEFFRCKIMDKHLEILAKKH-----LE--TKFIKV-N-------AEK-----------------------   63 (113)
T ss_pred             CCcEEEEEECCCCccHHHHHHHHHHHHHHc-----CC--CEEEEE-E-------ccc-----------------------
Confidence            478999999999999863  4454 43322     12  344443 2       111                       


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                        ...|.+.|++++.|+++++. +|+.+.
T Consensus        64 --~~~l~~~~~v~~vPt~l~fk-~G~~v~   89 (113)
T cd02989          64 --APFLVEKLNIKVLPTVILFK-NGKTVD   89 (113)
T ss_pred             --CHHHHHHCCCccCCEEEEEE-CCEEEE
Confidence              12356779999999999997 777663

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=88.39  E-value=2.1  Score=37.24  Aligned_cols=61  Identities=16%  Similarity=0.158  Sum_probs=41.2

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      ||.++++|.+.||++++.  +.|. +=++.+    +++.++||-.          ++  |.                   
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~----~~v~f~~vd~----------~~--~~-------------------   56 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFK----GKLLFVVVDA----------DD--FG-------------------   56 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhC----CeEEEEEEch----------Hh--hH-------------------
Confidence            889999999999976532  3444 444443    4578888742          22  11                   


Q ss_pred             HHHHHHHHhhCcC--CceEEEEeCC
Q 044391          411 AVVKYAKEVWKFS--KKAILVPVDP  433 (691)
Q Consensus       411 ~~~r~ike~f~~~--~iP~LVvL~p  433 (691)
                          .+.+.|+++  +.|++++++.
T Consensus        57 ----~~~~~~~i~~~~~P~~~~~~~   77 (103)
T cd02982          57 ----RHLEYFGLKEEDLPVIAIINL   77 (103)
T ss_pred             ----HHHHHcCCChhhCCEEEEEec
Confidence                134457888  9999999987

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=87.95  E-value=1.2  Score=41.31  Aligned_cols=60  Identities=22%  Similarity=0.418  Sum_probs=41.1

Q ss_pred             hcccC-chhhhhhhcCCcEEEEEccCChhHH---HHHHHHHHHHHHHh-C--CceeeEEecccChHHHHhh
Q 044391          475 LIDDI-DATILEWMKEERYICLYGGGDIEWI---RRFTTSAKAVARAA-Q--INLGMAYVGKNNAKERFRK  538 (691)
Q Consensus       475 Lvd~i-d~~I~~~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a-~--~~~E~v~Vgkdn~~e~v~~  538 (691)
                      |+|+- ...+.++  .||.+.|||.+  .||   ++..+.+.+++++. +  ..+++++|+-|...+.+++
T Consensus         3 ~~~~~~~v~l~~~--~Gk~vll~F~a--twC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~   69 (132)
T cd02964           3 LLDGEGVVPVSAL--EGKTVGLYFSA--SWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNE   69 (132)
T ss_pred             cccCCccccHHHh--CCCEEEEEEEC--CCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHH
Confidence            45544 2234556  89999999998  787   77777777776542 2  4799999998754444433

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=87.64  E-value=4.8  Score=38.95  Aligned_cols=100  Identities=12%  Similarity=0.075  Sum_probs=61.0

Q ss_pred             Cceeecce-ecCcEEEEEEecC-CCChh--h-hHHHH-HHHHhhccCCCCe-eEEEEecccCCCCCChhhHHHHHHHhcC
Q 044391          324 RTRVNIEV-LRRKHVLLLISSL-DLSDE--E-ILVLH-LYREHKAREEFDY-AIVWLPIVDRSIAWDEGYRQKFEQLQAM  396 (691)
Q Consensus       324 ~~kV~Is~-L~gK~VlL~fSal-~~~~~--e-~~~L~-iY~~lk~~~~~~f-EIVwIpiVd~s~~W~D~d~~~F~~~~~~  396 (691)
                      +..|.+++ ++||.|.|||--. |+|.|  + +.-+. .|++++++   +. +|+=||. |     +-...++|.+-..-
T Consensus        18 g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~---g~~~V~~iS~-D-----~~~~~~~~~~~~~~   88 (155)
T cd03013          18 PNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK---GVDEVICVSV-N-----DPFVMKAWGKALGA   88 (155)
T ss_pred             CceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC---CCCEEEEEEC-C-----CHHHHHHHHHhhCC
Confidence            56799999 5887666666554 55444  6 77788 99999743   57 5888885 4     24456667665443


Q ss_pred             -CCeeeecCCCCCchHHHHHHHHhhCcC------C-----ceEEEEeCCCCceecc
Q 044391          397 -MPWYTVQHPTIIEPAVVKYAKEVWKFS------K-----KAILVPVDPQGRILNQ  440 (691)
Q Consensus       397 -MPWyAVp~~d~i~~~~~r~ike~f~~~------~-----iP~LVvL~pqGkv~~~  440 (691)
                       .|..-+--++       +.+.+.|++-      +     ....+|+| +|++...
T Consensus        89 ~~~f~lLsD~~-------~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~  136 (155)
T cd03013          89 KDKIRFLADGN-------GEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYL  136 (155)
T ss_pred             CCcEEEEECCC-------HHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEE
Confidence             1222222121       2334445541      1     46778889 6998754

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=87.52  E-value=0.79  Score=42.85  Aligned_cols=45  Identities=16%  Similarity=0.339  Sum_probs=37.1

Q ss_pred             hhhhcCCcEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeeEEeccc
Q 044391          484 LEWMKEERYICLYGGGDI-EWIRRFTTSAKAVARAAQINLGMAYVGKN  530 (691)
Q Consensus       484 ~~~i~egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkd  530 (691)
                      .+-++.|+++.+|||+.+ .|||.|.|.+.+++++  ....++||-.|
T Consensus        17 ~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd   62 (122)
T TIGR01295        17 LEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSE   62 (122)
T ss_pred             HHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECC
Confidence            345779999999999966 6679999999999776  45678898877

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=87.35  E-value=3.1  Score=42.64  Aligned_cols=104  Identities=15%  Similarity=0.187  Sum_probs=70.2

Q ss_pred             ceeecceecCcEEEEEEecCCC---ChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCee
Q 044391          325 TRVNIEVLRRKHVLLLISSLDL---SDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWY  400 (691)
Q Consensus       325 ~kV~Is~L~gK~VlL~fSal~~---~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWy  400 (691)
                      .+|..++..||.+.|||=-.|.   ||-|+.-+. .|++.+++   +-||+-||+ |+     .....+..+--..-.=.
T Consensus        24 ~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~---g~eVigvS~-Ds-----~fsH~aW~~~~~~~~gi   94 (194)
T COG0450          24 EEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR---GVEVIGVST-DS-----VFSHKAWKATIREAGGI   94 (194)
T ss_pred             eEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc---CCEEEEEec-Cc-----HHHHHHHHhcHHhcCCc
Confidence            4799999999999999999994   777888899 99999854   699999996 42     22233333321111111


Q ss_pred             e-ecCCCCCchHHHHHHHHhhCcCC------ceEEEEeCCCCceec
Q 044391          401 T-VQHPTIIEPAVVKYAKEVWKFSK------KAILVPVDPQGRILN  439 (691)
Q Consensus       401 A-Vp~~d~i~~~~~r~ike~f~~~~------iP~LVvL~pqGkv~~  439 (691)
                      . |+||=.-  ...+.|.+.|++-.      .=.+.|+||+|++-.
T Consensus        95 ~~i~~Pmia--D~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~  138 (194)
T COG0450          95 GKIKFPMIA--DPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRH  138 (194)
T ss_pred             cceecceEE--cCchhHHHHcCCcccCCCcceeEEEEECCCCeEEE
Confidence            1 5565321  23556777788854      235789999998743

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=86.69  E-value=2.9  Score=34.79  Aligned_cols=34  Identities=12%  Similarity=0.095  Sum_probs=22.7

Q ss_pred             EEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEec
Q 044391          338 LLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPI  375 (691)
Q Consensus       338 lL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpi  375 (691)
                      ..+|++.||++|.-  +.|. +.++.+    .+++++.|-+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~~vd~   39 (82)
T TIGR00411         3 IELFTSPTCPYCPAAKRVVEEVAKEMG----DAVEVEYINV   39 (82)
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHHhc----CceEEEEEeC
Confidence            45678899988753  5677 766653    3477777753

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=86.41  E-value=2.2  Score=42.39  Aligned_cols=88  Identities=14%  Similarity=0.053  Sum_probs=54.8

Q ss_pred             CcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHH
Q 044391          334 RKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAV  412 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~  412 (691)
                      ++.|.++|.+.||++|..  +. ++++|-.+. .  ++.|+-|        |.++                       . 
T Consensus        83 ~~~VVV~Fya~wc~~Ck~--m~~~l~~LA~~~-~--~vkF~kV--------d~d~-----------------------~-  125 (175)
T cd02987          83 DTTVVVHIYEPGIPGCAA--LNSSLLCLAAEY-P--AVKFCKI--------RASA-----------------------T-  125 (175)
T ss_pred             CcEEEEEEECCCCchHHH--HHHHHHHHHHHC-C--CeEEEEE--------eccc-----------------------h-
Confidence            459999999999999863  33 444443221 1  4777766        2221                       0 


Q ss_pred             HHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCcccccCChhhHHHHH
Q 044391          413 VKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALW  465 (691)
Q Consensus       413 ~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~e~L~  465 (691)
                        .+.+.|+++.+|+++++- +|+.+..= .. ....|..  -|+.+++|..-
T Consensus       126 --~l~~~f~v~~vPTlllyk-~G~~v~~~-vG-~~~~~g~--~f~~~~le~~L  171 (175)
T cd02987         126 --GASDEFDTDALPALLVYK-GGELIGNF-VR-VTEDLGE--DFDAEDLESFL  171 (175)
T ss_pred             --hhHHhCCCCCCCEEEEEE-CCEEEEEE-ec-hHHhcCC--CCCHHHHHHHH
Confidence              345568999999999986 58777422 11 1234444  67777776543

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=86.17  E-value=1.9  Score=42.12  Aligned_cols=37  Identities=11%  Similarity=-0.103  Sum_probs=24.9

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEE
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWL  373 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwI  373 (691)
                      ++.|+++|.+.||++|.-  +.+. +.++..   +.++.++-|
T Consensus        47 ~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~---~~~v~f~~V   86 (152)
T cd02962          47 RVTWLVEFFTTWSPECVNFAPVFAELSLKYN---NNNLKFGKI   86 (152)
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHcc---cCCeEEEEE
Confidence            679999999999998853  4555 554432   234555555

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=86.06  E-value=2  Score=44.61  Aligned_cols=65  Identities=12%  Similarity=0.052  Sum_probs=44.1

Q ss_pred             CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      ++.++++|.+.||++|.  .+.+. +.++++    +.  |.+.-+ |       .++.                      
T Consensus        52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~----~~--v~~~~V-D-------~~~~----------------------   95 (224)
T PTZ00443         52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALK----GQ--VNVADL-D-------ATRA----------------------   95 (224)
T ss_pred             CCCEEEEEECCCChHHHHHHHHHHHHHHHcC----CC--eEEEEe-c-------Cccc----------------------
Confidence            57899999999999875  35666 766654    22  333322 3       1110                      


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                         ..+.+.|++++.|++++++ +|+.+
T Consensus        96 ---~~l~~~~~I~~~PTl~~f~-~G~~v  119 (224)
T PTZ00443         96 ---LNLAKRFAIKGYPTLLLFD-KGKMY  119 (224)
T ss_pred             ---HHHHHHcCCCcCCEEEEEE-CCEEE
Confidence               1356678999999999998 78765

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=86.02  E-value=3.3  Score=36.74  Aligned_cols=71  Identities=10%  Similarity=-0.056  Sum_probs=43.7

Q ss_pred             cceecCcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCC
Q 044391          329 IEVLRRKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTI  407 (691)
Q Consensus       329 Is~L~gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~  407 (691)
                      ++.|+++.-..+|.+.||+.|..  +. +.+++.+. ..++++..|-+        |+    +.                
T Consensus         7 ~~~l~~pv~i~~F~~~~C~~C~~--~~~~~~~l~~~-~~~i~~~~vd~--------~~----~~----------------   55 (89)
T cd03026           7 IRRLNGPINFETYVSLSCHNCPD--VVQALNLMAVL-NPNIEHEMIDG--------AL----FQ----------------   55 (89)
T ss_pred             HHhcCCCEEEEEEECCCCCCcHH--HHHHHHHHHHH-CCCceEEEEEh--------Hh----CH----------------
Confidence            34688888888999999988763  23 44555432 22344444422        21    11                


Q ss_pred             CchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          408 IEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       408 i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                             .+.+++++.+.|++|+   +|+++..
T Consensus        56 -------e~a~~~~V~~vPt~vi---dG~~~~~   78 (89)
T cd03026          56 -------DEVEERGIMSVPAIFL---NGELFGF   78 (89)
T ss_pred             -------HHHHHcCCccCCEEEE---CCEEEEe
Confidence                   1233579999999986   6877763

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=85.82  E-value=2  Score=39.84  Aligned_cols=67  Identities=6%  Similarity=-0.052  Sum_probs=42.2

Q ss_pred             ecCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391          332 LRRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII  408 (691)
Q Consensus       332 L~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i  408 (691)
                      -.+|.|++.|.+.||++|..  +.+. +-++++    +.  +.++-+ |-     |++                      
T Consensus        27 ~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~----~~--v~~~~V-d~-----d~~----------------------   72 (113)
T cd03006          27 TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS----DQ--VLFVAI-NC-----WWP----------------------   72 (113)
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc----CC--eEEEEE-EC-----CCC----------------------
Confidence            35799999999999988854  4454 444443    22  555554 31     111                      


Q ss_pred             chHHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391          409 EPAVVKYAKEVWKFSKKAILVPVDPQGRI  437 (691)
Q Consensus       409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv  437 (691)
                       .   ...++.+++++.|++.++ .+|+.
T Consensus        73 -~---~l~~~~~~I~~~PTl~lf-~~g~~   96 (113)
T cd03006          73 -Q---GKCRKQKHFFYFPVIHLY-YRSRG   96 (113)
T ss_pred             -h---HHHHHhcCCcccCEEEEE-ECCcc
Confidence             1   112345799999999999 56653

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=85.31  E-value=2.7  Score=38.78  Aligned_cols=72  Identities=11%  Similarity=0.097  Sum_probs=47.9

Q ss_pred             CcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHH
Q 044391          334 RKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAV  412 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~  412 (691)
                      +|-|.+.|+|.||+||..  +. .|++|-.+ -.+  ++|+=+ |       -|+                         
T Consensus        21 ~kliVvdF~a~wCgPCk~--i~P~~~~La~~-y~~--v~Flkv-d-------vde-------------------------   62 (106)
T KOG0907|consen   21 DKLVVVDFYATWCGPCKA--IAPKFEKLAEK-YPD--VVFLKV-D-------VDE-------------------------   62 (106)
T ss_pred             CCeEEEEEECCCCcchhh--hhhHHHHHHHH-CCC--CEEEEE-e-------ccc-------------------------
Confidence            799999999999999854  45 67777654 334  566543 2       111                         


Q ss_pred             HHHHHHhhCcCCceEEEEeCC---CCceecccHH
Q 044391          413 VKYAKEVWKFSKKAILVPVDP---QGRILNQNAF  443 (691)
Q Consensus       413 ~r~ike~f~~~~iP~LVvL~p---qGkv~~~NA~  443 (691)
                      .+-+.+.|+++..|+++.+-.   .++++..|..
T Consensus        63 ~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~   96 (106)
T KOG0907|consen   63 LEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA   96 (106)
T ss_pred             CHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH
Confidence            234456689999999999932   2455555544

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=84.07  E-value=3  Score=39.12  Aligned_cols=68  Identities=12%  Similarity=0.060  Sum_probs=42.2

Q ss_pred             CcEEEEEEecCC--CChhhh--HHHHHHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          334 RKHVLLLISSLD--LSDEEI--LVLHLYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       334 gK~VlL~fSal~--~~~~e~--~~L~iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      |..+.|+|++.|  ||+|..  ++|.   ++.++.++...++-|=+        |++                       
T Consensus        27 ~~~~v~~f~~~~~~cp~c~~i~P~le---ela~e~~~~v~f~kVdi--------d~~-----------------------   72 (111)
T cd02965          27 GGDLVLLLAGDPVRFPEVLDVAVVLP---ELLKAFPGRFRAAVVGR--------ADE-----------------------   72 (111)
T ss_pred             CCCEEEEecCCcccCcchhhhHhHHH---HHHHHCCCcEEEEEEEC--------CCC-----------------------
Confidence            456778899997  888743  4555   33332233444444422        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                          ..|.+.|+++++|+|+++- +|+.+..
T Consensus        73 ----~~la~~f~V~sIPTli~fk-dGk~v~~   98 (111)
T cd02965          73 ----QALAARFGVLRTPALLFFR-DGRYVGV   98 (111)
T ss_pred             ----HHHHHHcCCCcCCEEEEEE-CCEEEEE
Confidence                1455668999999999986 6777643

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=83.04  E-value=2.7  Score=38.49  Aligned_cols=54  Identities=19%  Similarity=0.359  Sum_probs=39.0

Q ss_pred             hhhhhhhcCCcEEEEEccCChhHH---HHHHHHHHHHHHHh---CCceeeEEecccChHHHHhh
Q 044391          481 ATILEWMKEERYICLYGGGDIEWI---RRFTTSAKAVARAA---QINLGMAYVGKNNAKERFRK  538 (691)
Q Consensus       481 ~~I~~~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a---~~~~E~v~Vgkdn~~e~v~~  538 (691)
                      ..+.+.  .||++.|||.+  .||   ++..+.+.+++++.   +..+++++|+-|...+.+++
T Consensus        11 v~l~~~--~gk~vll~Fwa--~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~   70 (131)
T cd03009          11 VPVSSL--EGKTVGLYFSA--SWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFND   70 (131)
T ss_pred             ccHHHh--CCcEEEEEEEC--CCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHH
Confidence            344555  89999999998  676   77788877775542   34799999998866544443

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=82.61  E-value=7.3  Score=36.34  Aligned_cols=52  Identities=17%  Similarity=0.238  Sum_probs=42.7

Q ss_pred             CCCceeecceecCcEEEEEEecCCCCh-hhhHHHH-HHHHhhccCCCCeeEEEEecc
Q 044391          322 SSRTRVNIEVLRRKHVLLLISSLDLSD-EEILVLH-LYREHKAREEFDYAIVWLPIV  376 (691)
Q Consensus       322 ~~~~kV~Is~L~gK~VlL~fSal~~~~-~e~~~L~-iY~~lk~~~~~~fEIVwIpiV  376 (691)
                      .+|+.|+++.++||.+++.=-|..|.- ....-|+ +|++.+.+   .|+|+-.|.-
T Consensus         9 ~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~qy~~L~~L~~ky~~~---gl~ILaFPcn   62 (108)
T PF00255_consen    9 IDGKPVSLSKYKGKVLLIVNVASKCGYTKQYKQLNELYEKYKDK---GLEILAFPCN   62 (108)
T ss_dssp             TTSSEEEGGGGTTSEEEEEEEESSSTTHHHHHHHHHHHHHHGGG---TEEEEEEEBS
T ss_pred             CCCCEECHHHcCCCEEEEEecccccCCccccHHHHHHHHHHhcC---CeEEEeeehH
Confidence            356789999999999999998988843 3556799 99999854   5999999973

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=82.36  E-value=6  Score=28.84  Aligned_cols=60  Identities=15%  Similarity=0.007  Sum_probs=38.7

Q ss_pred             EEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHHHH
Q 044391          338 LLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVK  414 (691)
Q Consensus       338 lL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~~r  414 (691)
                      +++|.+.||+.|..  ..+. + .    ....++.++++++-+      ..+...+                        
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~----~~~~~~~~~~~~~~~------~~~~~~~------------------------   45 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-A----LLNKGVKFEAVDVDE------DPALEKE------------------------   45 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-H----hhCCCcEEEEEEcCC------ChHHhhH------------------------
Confidence            36778888877643  4455 5 1    225679999998622      1111112                        


Q ss_pred             HHHHhhCcCCceEEEEeCCC
Q 044391          415 YAKEVWKFSKKAILVPVDPQ  434 (691)
Q Consensus       415 ~ike~f~~~~iP~LVvL~pq  434 (691)
                        ...+++...|.+++.+++
T Consensus        46 --~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659          46 --LKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             --HHhCCCccccEEEEEeCC
Confidence              445788899999999887

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=82.26  E-value=1.9  Score=43.84  Aligned_cols=132  Identities=18%  Similarity=0.340  Sum_probs=87.7

Q ss_pred             CceecCCCCceeecceecCcEEEEEEecCCC---ChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHH
Q 044391          316 QPVVDGSSRTRVNIEVLRRKHVLLLISSLDL---SDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFE  391 (691)
Q Consensus       316 ~~l~~g~~~~kV~Is~L~gK~VlL~fSal~~---~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~  391 (691)
                      .-.++|.-+ .++++.++||+|+|+|=.+|.   ||.|+.... -|.+.+   +-+-||+.+|. |+             
T Consensus        16 ~aVVdG~f~-e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~---~~n~eVig~S~-DS-------------   77 (196)
T KOG0852|consen   16 TAVVDGEFK-EIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFR---KLNTEVLGIST-DS-------------   77 (196)
T ss_pred             eEEEcCcce-EEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHH---hcCCeEEEEec-cc-------------
Confidence            356788554 799999999999999988883   788888888 999988   45789999985 42             


Q ss_pred             HHhcCCCeeeecCCCC--------CchHHHHHHHHhhCc----CCce--EEEEeCCCCceec------------ccHHHH
Q 044391          392 QLQAMMPWYTVQHPTI--------IEPAVVKYAKEVWKF----SKKA--ILVPVDPQGRILN------------QNAFHM  445 (691)
Q Consensus       392 ~~~~~MPWyAVp~~d~--------i~~~~~r~ike~f~~----~~iP--~LVvL~pqGkv~~------------~NA~~m  445 (691)
                       .++-.-|-+.|-...        +=....+.|.+.|++    .|++  -|.++||+|.+-.            ..++.+
T Consensus        78 -~fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRL  156 (196)
T KOG0852|consen   78 -VFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRL  156 (196)
T ss_pred             -hhhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHH
Confidence             123334444442110        001235677777877    4554  5899999886633            234455


Q ss_pred             HHHhCcccccCChhhHHHHHhhhccchh
Q 044391          446 LWIWGNLAFPFSAEKEAALWKAESWRLE  473 (691)
Q Consensus       446 I~~wG~~AFPFT~~r~e~L~~~e~w~le  473 (691)
                      |     +||-||....|-.-+  .|++.
T Consensus       157 v-----qAfQ~td~~geVcPa--gW~pg  177 (196)
T KOG0852|consen  157 V-----QAFQFTDEHGEVCPA--GWKPG  177 (196)
T ss_pred             H-----HHHhhhhccCccccC--CCCCC
Confidence            4     688888777664433  45554

>PTZ00102 disulphide isomerase; Provisional

Probab=80.89  E-value=3.3  Score=46.02  Aligned_cols=69  Identities=9%  Similarity=-0.020  Sum_probs=48.8

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +++.++++|-+.||++|.-  +.+. +.+++++.   ...|++..+ |       .++                      
T Consensus        48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~---~~~i~~~~v-d-------~~~----------------------   94 (477)
T PTZ00102         48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEK---KSEIVLASV-D-------ATE----------------------   94 (477)
T ss_pred             cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhc---CCcEEEEEE-E-------CCC----------------------
Confidence            4789999999999988752  5566 77776532   346788775 3       111                      


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRI  437 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv  437 (691)
                         -+.+.+.|++++.|+++++...+.+
T Consensus        95 ---~~~l~~~~~i~~~Pt~~~~~~g~~~  119 (477)
T PTZ00102         95 ---EMELAQEFGVRGYPTIKFFNKGNPV  119 (477)
T ss_pred             ---CHHHHHhcCCCcccEEEEEECCceE
Confidence               1235667899999999999876554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	691
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.8 bits (162), Expect = 2e-11
 Identities = 57/445 (12%), Positives = 127/445 (28%), Gaps = 124/445 (27%)

Query: 13  LSATDDSAMMKQVQASHAPDGREVDVRPILSIIEDIFRRATPST---IDGVGTREHVDAL 69
           L    D     +   S     R   ++  L  +  +  +   +    +  V   +  +A 
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--LKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 70  DNNASPAALSGMLDALSCDI----RKISCEISCKCSGGEEAHATTMDLFNILSVYSWDAK 125
           +              LSC I    R     ++   S     H +       L+       
Sbjct: 263 N--------------LSCKILLTTRFKQ--VTDFLSAATTTHISLDHHSMTLT-----PD 301

Query: 126 MVLSLAAFALNYGQFWLSAQLCNKNSLAKSM--AVLKQLPNVLEHY-NALKPQLDALIKV 182
            V SL    L+     L  ++   N    S+    ++      +++ +    +L  +I+ 
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 183 MLD-LTKCIVEFKQL-------------PSQYIS--------TDAQAMSTAMADTPAAAY 220
            L+ L     E++++             P+  +S        +D   +   +        
Sbjct: 362 SLNVLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 221 WTFRSIVACHSQILSLAGLRDEYTASNTDAWELASLAHRVSRILEHFKKLIAICYQQIDE 280
               S ++  S  L L    +   A            HR   I++H+   I   +   D 
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYA-----------LHR--SIVDHYN--IPKTFDSDDL 464

Query: 281 NRQIE--------AYHNLVRLLETIHMDNMKVLRALIYAKDDIQPVVDGSSRTRVNIEVL 332
                         +H     L+ I       L  +++                ++   L
Sbjct: 465 IPPYLDQYFYSHIGHH-----LKNIEHPERMTLFRMVF----------------LDFRFL 503

Query: 333 RRK--HVLLLISSLDLSDEEILVLHLYREH-----KAREEFDYAIV-WLP---------- 374
            +K  H     ++       +  L  Y+ +        E    AI+ +LP          
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563

Query: 375 ---IVDRSIAWDEG--YRQKFEQLQ 394
              ++  ++  ++   + +  +Q+Q
Sbjct: 564 YTDLLRIALMAEDEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.9 bits (157), Expect = 6e-11
 Identities = 70/473 (14%), Positives = 139/473 (29%), Gaps = 141/473 (29%)

Query: 246 SNTDAWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETIHMDNMKVL 305
           S  +   +      VS  L  F  L          ++Q E      + +E +   N K L
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRLFWTL---------LSKQEEMVQ---KFVEEVLRINYKFL 94

Query: 306 RALIYAKDDIQPVVDG----SSRTRVN--------IEVLRRKHVLLLISSL-DLSDEEIL 352
            + I   +  QP +        R R+           V R +  L L  +L +L   + +
Sbjct: 95  MSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 353 VLH-------------LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPW 399
           ++              +   +K + + D+ I WL +               E +  M+  
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL---------KNCNSPETVLEML-- 202

Query: 400 YTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAE 459
                                    + +L  +DP        + H      N+     + 
Sbjct: 203 -------------------------QKLLYQIDPN---WTSRSDHSS----NIKLRIHSI 230

Query: 460 KEA--ALWKAESWRLELLI-DDI-DATILEWMKEERYIC--LYGGGDIEWIRRFTTSAKA 513
           +     L K++ +   LL+  ++ +A            C  L            TT  K 
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS---CKIL-----------LTTRFKQ 276

Query: 514 VARAA------QINLGMAYVG--KNNAKERFRKISRIVIQENLSH--TLTDPTEVWFFWA 563
           V           I+L    +    +  K    K      Q+ L      T+P  +     
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPREVLTTNPRRLSIIAE 335

Query: 564 RLESML--YSKLQHGATVEDDHIMQEVMTILSFDGSE-----QGWAIFWRGTHEMARAKG 616
            +   L  +   +H    +   I++   ++   + +E        ++F         A  
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIE--SSLNVLEPAEYRKMFDRLSVF------PPSAHI 387

Query: 617 EMAVDCMMEFEKWKDD--ADQMGFVAGLNNY--LQRVHTPRHCNRLI-LPDIH 664
              +  ++    W D   +D M  V  L+ Y  +++    +     I +P I+
Sbjct: 388 PTILLSLI----WFDVIKSDVMVVVNKLHKYSLVEK----QPKESTISIPSIY 432

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 3e-08
 Identities = 84/585 (14%), Positives = 165/585 (28%), Gaps = 205/585 (35%)

Query: 32  DGREVD--VRPILS--IIEDIFRRATPSTIDGVGTREHVDALDNNASPAALSGMLDALSC 87
           D ++V    + ILS   I+ I       +    GT      L +         + + L  
Sbjct: 34  DCKDVQDMPKSILSKEEIDHIIMSKDAVS----GTLRLFWTLLSKQEEMVQKFVEEVLRI 89

Query: 88  DIRKISCEISCKC---SGGEEAHATTMD-LFNILSVYS----WDAKMVLSL--AAFALN- 136
           + + +   I  +    S     +    D L+N   V++       +  L L  A   L  
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 137 ------YGQF-----WLSAQLCNKNSLAKSM----------------AVLKQL------- 162
                  G       W++  +C    +   M                 VL+ L       
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 163 -----------PNVLEHYNALKPQLDALIK--------VMLD------------------ 185
                       N+    ++++ +L  L+K        ++L                   
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 186 LT---KCIVEF------KQLPSQYIS---TDAQAMS-------TAMADTPAAAYWTFRSI 226
           LT   K + +F        +   + S   T  +  S           D P       R +
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-------REV 322

Query: 227 VACHSQILSLAG--LRDEYTASNTDAWELASLAHRVSRILEHFKKLIAICYQQIDENRQI 284
           +  + + LS+    +RD    +  D W+  +         +    +I      ++     
Sbjct: 323 LTTNPRRLSIIAESIRDG--LATWDNWKHVN--------CDKLTTIIESSLNVLEPAEYR 372

Query: 285 EAYHNLVRLLETIHMDNMKVLRALIYAKDDIQPVVDGSSRTRVNIEVLRRKHVL-LLISS 343
           + +  L                  ++                 +I       +L L+   
Sbjct: 373 KMFDRLS-----------------VFPPS-------------AHIPT----ILLSLIWFD 398

Query: 344 LDLSDEEILVLHLYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQ 403
           +  SD  ++V  L++     ++   + + +P    SI  +   + K E   A+       
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIP----SIYLE--LKVKLENEYAL------- 445

Query: 404 HPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGN-----------L 452
           H +I++     Y       S   I   +D      +    H+  I  +           L
Sbjct: 446 HRSIVD----HYNIPKTFDSDDLIPPYLD--QYFYSHIGHHLKNI-EHPERMTLFRMVFL 498

Query: 453 AFPFSAEK---EAALWKAESWRLELLIDDIDATILEWMKEERYIC 494
            F F  +K   ++  W A    L  L        L+    + YIC
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQ------LK--FYKPYIC 535

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	691
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.42
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.39
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.37
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.34
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	98.67
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.02
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	98.97
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	98.95
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	98.92
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	98.86
3raz_A	151	Thioredoxin-related protein; structural genomics,	98.85
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	98.84
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	98.82
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	98.79
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	98.75
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	98.75
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	98.72
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	98.71
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	98.71
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	98.69
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	98.64
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	98.64
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.63
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.62
4evm_A	138	Thioredoxin family protein; structural genomics, n	98.61
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	98.61
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	98.6
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.6
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	98.6
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	98.6
3me7_A	170	Putative uncharacterized protein; electron transfe	98.59
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	98.58
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.58
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	98.57
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.57
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	98.57
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	98.56
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	98.54
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.52
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	98.52
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	98.51
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	98.5
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.5
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	98.5
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	98.5
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	98.48
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.48
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	98.48
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	98.46
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.46
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	98.45
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	98.44
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	98.41
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	98.4
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	98.4
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.39
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.38
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	98.38
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	98.38
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.37
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	98.37
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	98.35
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.34
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.34
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	98.34
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.34
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.31
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	98.3
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	98.29
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	98.28
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	98.27
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	97.6
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	98.26
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	98.2
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	98.2
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	98.19
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.18
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	98.17
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	98.17
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	98.16
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	98.15
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	98.14
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	98.14
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.12
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	98.12
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	98.1
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	98.08
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	98.06
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	97.96
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	97.95
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	97.86
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	97.82
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	97.77
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	97.77
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	97.76
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	97.75
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	97.66
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	97.63
2l57_A	126	Uncharacterized protein; structural genomics, unkn	97.62
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	97.62
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	97.6
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	97.51
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	97.48
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	97.35
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	97.33
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	97.29
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	97.24
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	97.11
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	97.06
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	97.06
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	97.04
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	97.03
2kuc_A	130	Putative disulphide-isomerase; structural genomics	97.03
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	97.01
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	97.01
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	96.97
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	96.96
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	96.95
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	96.91
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	96.89
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	96.87
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	96.85
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	96.85
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.83
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	96.79
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	96.79
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	96.78
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	95.81
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	96.77
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	96.76
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	96.76
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	96.75
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	96.75
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	96.74
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	96.73
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	96.73
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	96.7
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	96.69
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	96.69
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	96.67
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	96.67
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	96.66
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	96.65
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	96.64
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	96.62
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	96.62
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	96.61
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	96.58
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	96.58
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	96.56
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	96.55
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	96.49
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	96.46
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	96.46
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	96.45
1mek_A	120	Protein disulfide isomerase; electron transport, r	96.45
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	96.45
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	96.44
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	96.44
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	96.42
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	96.38
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	96.34
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	96.32
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	96.32
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	96.32
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	96.32
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	96.28
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	96.26
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	96.19
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	96.19
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	96.18
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	96.16
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	96.15
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	96.09
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	96.07
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	96.06
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	96.03
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	96.0
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	95.98
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	95.98
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	95.94
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	95.9
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	95.83
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	95.82
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	95.72
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	95.45
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	95.43
3ira_A	173	Conserved protein; methanosarcina mazei,structural	95.37
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	95.23
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	95.05
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	94.76
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	94.66
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	93.67
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	94.64
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	94.57
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	94.48
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	94.43
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	94.37
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	94.21
2qsi_A	137	Putative hydrogenase expression/formation protein;	94.14
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	94.04
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	93.71
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	93.45
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	92.94
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	92.3
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	91.89
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	91.82
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	90.69
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	90.3
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	90.15
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	89.84
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	89.82
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	89.63
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	89.48
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	89.28
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	89.04
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	88.69
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	88.32
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	87.89
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	87.77
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	87.6
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	86.67
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	86.48
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	85.55
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	84.45
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	84.41
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	84.26
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	83.72
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	83.3
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	82.39
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	82.38
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	81.13
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	80.68
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	80.17
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	80.17
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	80.09
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	80.08
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	80.05

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.42  E-value=1.2e-12  Score=122.57  Aligned_cols=123  Identities=17%  Similarity=0.284  Sum_probs=103.1

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCC
Q 044391          322 SSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMP  398 (691)
Q Consensus       322 ~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MP  398 (691)
                      .+| .+.++.++||.|+|+|.+.||++|  +.+.|. +|++++.+  .+++||.|++        |.+.+.+..+...++
T Consensus        37 ~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~--~~v~vv~v~~--------d~~~~~~~~~~~~~~  105 (165)
T 3s9f_A           37 QAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDS--KNFEIILASW--------DEEEDDFNAYYAKMP  105 (165)
T ss_dssp             TTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--TTEEEEEEEC--------CCSHHHHHHHHTTCS
T ss_pred             CCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccC--CCeEEEEEec--------CCCHHHHHHHHHhCC
Confidence            455 899999999999999999999877  457799 99998742  4799999997        556678889999999


Q ss_pred             eeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCC-CceecccHHHHHHHh-CcccccCCh
Q 044391          399 WYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQ-GRILNQNAFHMLWIW-GNLAFPFSA  458 (691)
Q Consensus       399 WyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pq-Gkv~~~NA~~mI~~w-G~~AFPFT~  458 (691)
                      |+.+|+..   ......+.+.|++.++|+++++|++ |+++..++.+.+..- ....||+..
T Consensus       106 ~~~~~~~~---~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~~~~~~~~d~~~~~fpw~~  164 (165)
T 3s9f_A          106 WLSIPFAN---RNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQDPMGEQFPWRD  164 (165)
T ss_dssp             SEECCTTC---HHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCCC
T ss_pred             CcccccCc---hhHHHHHHHHcCCCCCCEEEEEeCCCCEEEecccHHHHhhCcccccCCCCC
Confidence            99999975   3344778899999999999999998 999999998877554 456699864

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.39  E-value=3e-12  Score=115.17  Aligned_cols=126  Identities=17%  Similarity=0.295  Sum_probs=104.7

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA  395 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~  395 (691)
                      +...+|+.+.++.++||.|+|+|.+.||++|  +.+.|. +|++++.+  .+++||.|++        |.+.+...++..
T Consensus        13 l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~--~~~~vv~v~~--------d~~~~~~~~~~~   82 (144)
T 1i5g_A           13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK--KNFEVMLISW--------DESAEDFKDYYA   82 (144)
T ss_dssp             EEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--TTEEEEEEEC--------CSSHHHHHHHHT
T ss_pred             EEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC--CCEEEEEEeC--------CCCHHHHHHHHH
Confidence            4445678899999999999999999999887  457789 99998742  4799999996        446677888899


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeC-CCCceecccHHHHHHHhCc-ccccCC
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVD-PQGRILNQNAFHMLWIWGN-LAFPFS  457 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~-pqGkv~~~NA~~mI~~wG~-~AFPFT  457 (691)
                      .++|..+|+..   ......+.+.|++.++|+++++| ++|+++..++...+..-+. ..||++
T Consensus        83 ~~~~~~~~~~~---~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w~  143 (144)
T 1i5g_A           83 KMPWLALPFED---RKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPWP  143 (144)
T ss_dssp             TCSSEECCTTC---HHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred             hCCccccccCc---hHHHHHHHHHcCCCCCCEEEEEECCCCcEEeccchhhhhhCcccccCCCC
Confidence            99999999863   23456778889999999999999 8999999999999988874 457764

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.37  E-value=6.8e-12  Score=112.27  Aligned_cols=124  Identities=19%  Similarity=0.298  Sum_probs=102.1

Q ss_pred             cCCCCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcC
Q 044391          320 DGSSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAM  396 (691)
Q Consensus       320 ~g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~  396 (691)
                      ...+| .+.+++++||.|+|+|.+.||++|.  .+.|. +|++++.  ..+++||.|++        |.+.+.+.++...
T Consensus        15 ~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vv~i~~--------d~~~~~~~~~~~~   83 (144)
T 1o73_A           15 LSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHV--AKNFEVVLISW--------DENESDFHDYYGK   83 (144)
T ss_dssp             BCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEEC--------CSSHHHHHHHHTT
T ss_pred             ecCCC-cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhcc--CCCEEEEEEeC--------CCCHHHHHHHHHh
Confidence            34566 8999999999999999999998874  57789 9999873  24799999986        4456778899999


Q ss_pred             CCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeC-CCCceecccHHHHHHHhCc-ccccCC
Q 044391          397 MPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVD-PQGRILNQNAFHMLWIWGN-LAFPFS  457 (691)
Q Consensus       397 MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~-pqGkv~~~NA~~mI~~wG~-~AFPFT  457 (691)
                      ++|+.+|+..   ......+.+.|++.+.|+++++| ++|+++..++...+..-+. ..||+.
T Consensus        84 ~~~~~~~~~~---~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~~~~~~W~  143 (144)
T 1o73_A           84 MPWLALPFDQ---RSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPWP  143 (144)
T ss_dssp             CSSEECCTTC---HHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred             CCceEeeccc---hhHHHHHHHHcCCCCCCEEEEEECCCCeEEecchhhHHhhCCCccCCCCC
Confidence            9999999863   23456778889999999999999 8999999999998887764 446653

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.34  E-value=5e-12  Score=114.18  Aligned_cols=125  Identities=18%  Similarity=0.261  Sum_probs=102.8

Q ss_pred             cCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcC
Q 044391          320 DGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAM  396 (691)
Q Consensus       320 ~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~  396 (691)
                      ...+| .+.+++++||.|+|+|.+.||++|  +.+.|. +|++++.+  .+++||.|++        |.+.+.+.++...
T Consensus        15 ~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~--~~~~vv~v~~--------d~~~~~~~~~~~~   83 (146)
T 1o8x_A           15 RRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES--KNFEVVFCTW--------DEEEDGFAGYFAK   83 (146)
T ss_dssp             EETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--TTEEEEEEEC--------CCSHHHHHHHHTT
T ss_pred             EcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhc--CCeEEEEEeC--------CCCHHHHHHHHHH
Confidence            33466 899999999999999999999877  457799 99998732  4799999986        4566788999999


Q ss_pred             CCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeC-CCCceecccHHHHHHHhCc-ccccCCh
Q 044391          397 MPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVD-PQGRILNQNAFHMLWIWGN-LAFPFSA  458 (691)
Q Consensus       397 MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~-pqGkv~~~NA~~mI~~wG~-~AFPFT~  458 (691)
                      ++|+.+|+..   ......+.+.|++.++|+++++| ++|+++..++...+..-+. .+||+.+
T Consensus        84 ~~~~~~~~~~---~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w~~  144 (146)
T 1o8x_A           84 MPWLAVPFAQ---SEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKD  144 (146)
T ss_dssp             CSSEECCGGG---HHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCCC
T ss_pred             CCceeeccch---hhHHHHHHHHhCCCCCCEEEEEECCCCeEEEecchhHHhhCCccccCCCCC
Confidence            9999999862   23456788889999999999999 8999999999988876663 5677753

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=98.67  E-value=1e-11  Score=110.42  Aligned_cols=114  Identities=15%  Similarity=0.174  Sum_probs=88.8

Q ss_pred             CCCceeecce-ecCc-EEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc-
Q 044391          322 SSRTRVNIEV-LRRK-HVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA-  395 (691)
Q Consensus       322 ~~~~kV~Is~-L~gK-~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~-  395 (691)
                      .+|..+.+++ ++|| .|+|+|.+.||++|  +.+.|. +|++++++ +.+++||.|++        |.+.+...++.. 
T Consensus        12 ~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~-~~~~~v~~v~~--------d~~~~~~~~~~~~   82 (143)
T 2lus_A           12 KNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDD-SAPFEIIFVSS--------DRSEDDMFQYMME   82 (143)
Confidence            4566799999 9999 99999999999887  457789 99998754 56899999986        223333444443 


Q ss_pred             -CCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHH
Q 044391          396 -MMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWI  448 (691)
Q Consensus       396 -~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~  448 (691)
                       ..||..+|+.+    ...+.+.+.|++.+.|+++++|++|+++..++...+..
T Consensus        83 ~~~~~~~~~~~~----~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~  132 (143)
T 2lus_A           83 SHGDWLAIPYRS----GPASNVTAKYGITGIPALVIVKKDGTLISMNGRGEVQS  132 (143)
Confidence             44899888865    33456777899999999999999999999988876553

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.02  E-value=8.1e-10  Score=101.39  Aligned_cols=108  Identities=13%  Similarity=0.257  Sum_probs=84.1

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA  395 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~  395 (691)
                      +...+|+.+.+++++||.|+|+|.+.||++|  +++.|. +|++++.+   +++||.|++        |..++....+..
T Consensus        20 l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~---~~~vv~i~~--------d~~~~~~~~~~~   88 (152)
T 2lrt_A           20 LKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ---GFEIYQISL--------DGDEHFWKTSAD   88 (152)
T ss_dssp             EEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---TEEEEEEEC--------SCCHHHHHHHHT
T ss_pred             EEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccC---CeEEEEEEc--------cCCHHHHHHHHh
Confidence            3445678899999999999999999999887  457799 99998743   699999986        333445566666


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceeccc
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQN  441 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~N  441 (691)
                      .+||..+.-++    .....+.+.|++.+.|+.+++|++|+++...
T Consensus        89 ~~~~~~~~d~~----~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  130 (152)
T 2lrt_A           89 NLPWVCVRDAN----GAYSSYISLYNVTNLPSVFLVNRNNELSARG  130 (152)
T ss_dssp             TCSSEEEECSS----GGGCHHHHHHTCCSCSEEEEEETTTEEEEET
T ss_pred             CCCceEEECCC----CcchHHHHHcCcccCceEEEECCCCeEEEec
Confidence            79988776544    2122355678999999999999999998753

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=98.97  E-value=6e-10  Score=100.19  Aligned_cols=107  Identities=9%  Similarity=0.030  Sum_probs=75.7

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCC
Q 044391          322 SSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMP  398 (691)
Q Consensus       322 ~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MP  398 (691)
                      .+|+.+++++++||.|+|+|.+.||++|  +++.|. +|++.+   +.+++||.|++ |.    +.++-++|-+ ...++
T Consensus        20 ~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~---~~~~~vv~vs~-d~----~~~~~~~~~~-~~~~~   90 (143)
T 4fo5_A           20 GNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFG---PDKIAMCSISM-DE----KESIFTETVK-IDKLD   90 (143)
T ss_dssp             ----CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSC---TTTEEEEEEEC-CS----CHHHHHHHHH-HHTCC
T ss_pred             CCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhC---cCCEEEEEEEc-cC----CHHHHHHHHH-HhCCC
Confidence            5667899999999999999999999877  457788 998876   34799999986 31    1222233433 24688


Q ss_pred             e-eeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceeccc
Q 044391          399 W-YTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQN  441 (691)
Q Consensus       399 W-yAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~N  441 (691)
                      | ..+..+.    .....+.+.|++.++|+.+++|++|+++..+
T Consensus        91 ~~~~~~d~~----~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  130 (143)
T 4fo5_A           91 LSTQFHEGL----GKESELYKKYDLRKGFKNFLINDEGVIIAAN  130 (143)
T ss_dssp             GGGEEECTT----GGGSHHHHHTTGGGCCCEEEECTTSBEEEES
T ss_pred             Cceeeeccc----ccchHHHHHcCCCCCCcEEEECCCCEEEEcc
Confidence            8 4444332    1123566779999999999999999998764

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=98.95  E-value=6.7e-09  Score=94.23  Aligned_cols=110  Identities=21%  Similarity=0.152  Sum_probs=82.3

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA  395 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~  395 (691)
                      +...+|+.+.+++++||.|+|+|.+.||++|.  .+.|. +|++++.   .+++||.|++ |.    +.+.-++|-.- .
T Consensus        14 l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~v~~-d~----~~~~~~~~~~~-~   84 (152)
T 2lrn_A           14 GIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKD---KGFTIYGVST-DR----REEDWKKAIEE-D   84 (152)
T ss_dssp             EECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTT---TTEEEEEEEC-CS----CHHHHHHHHHH-H
T ss_pred             eEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcc---CCeEEEEEEc-cC----CHHHHHHHHHH-h
Confidence            33456778999999999999999999998874  56788 9998863   4699999986 21    12233444332 3


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceeccc
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQN  441 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~N  441 (691)
                      .+||..+.-+.    .....+.+.|++.+.|+++++|++|+++...
T Consensus        85 ~~~~~~~~d~~----~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  126 (152)
T 2lrn_A           85 KSYWNQVLLQK----DDVKDVLESYCIVGFPHIILVDPEGKIVAKE  126 (152)
T ss_dssp             TCCSEEEEECH----HHHHHHHHHTTCCSSCEEEEECTTSEEEEEC
T ss_pred             CCCCeEEeccc----chhHHHHHHhCCCcCCeEEEECCCCeEEEee
Confidence            67777665431    2346677889999999999999999998764

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=98.92  E-value=6.8e-09  Score=93.98  Aligned_cols=111  Identities=13%  Similarity=0.196  Sum_probs=81.5

Q ss_pred             ecCCCCceeecc--eecCcEEEEEEecCCCCh--hh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHH
Q 044391          319 VDGSSRTRVNIE--VLRRKHVLLLISSLDLSD--EE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFE  391 (691)
Q Consensus       319 ~~g~~~~kV~Is--~L~gK~VlL~fSal~~~~--~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~  391 (691)
                      +...+|+.+.++  .++||.|+|+|-+.||++  |.  ++.|. +|++++.  +.+++||.|++ |.    +.+.-++|-
T Consensus        16 l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~--~~~~~~v~v~~-d~----~~~~~~~~~   88 (150)
T 3fw2_A           16 LPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKK--NKYIGMLGISL-DV----DKQQWKDAI   88 (150)
T ss_dssp             EEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTT--CSSEEEEEEEC-CS----CHHHHHHHH
T ss_pred             eECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhcc--CCCeEEEEEEc-CC----CHHHHHHHH
Confidence            344667789999  999999999999999988  84  57799 9999831  34699999986 21    122233333


Q ss_pred             HHhcCCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceeccc
Q 044391          392 QLQAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQN  441 (691)
Q Consensus       392 ~~~~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~N  441 (691)
                      . ...+||..+.-+.    .....+.+.|++.+.|+++++|++|+++...
T Consensus        89 ~-~~~~~~~~~~d~~----~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  133 (150)
T 3fw2_A           89 K-RDTLDWEQVCDFG----GLNSEVAKQYSIYKIPANILLSSDGKILAKN  133 (150)
T ss_dssp             H-HTTCCSEEECCSC----GGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred             H-HhCCCceEEEcCc----ccchHHHHHcCCCccCeEEEECCCCEEEEcc
Confidence            2 2356887765442    1234566779999999999999999999765

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=98.86  E-value=2.9e-09  Score=95.61  Aligned_cols=107  Identities=11%  Similarity=0.092  Sum_probs=79.1

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH----HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH----LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ  392 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~----iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~  392 (691)
                      +...+|+.+.++.++||.|+|+|-+.||++|  +++.|.    +|++.+   +.+++||.|+.        |.+.+.+..
T Consensus        16 l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~---~~~~~vi~i~~--------d~~~~~~~~   84 (142)
T 3eur_A           16 YTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTA---AKKLKVLSIYP--------DEELDEWKK   84 (142)
T ss_dssp             EEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHH---TTSEEEEEEEC--------SSCHHHHHH
T ss_pred             EEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhc---cCCeEEEEEEc--------CCCHHHHHH
Confidence            3446677899999999999999999999887  445554    477776   35699999986        344455555


Q ss_pred             HhcCC--CeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceeccc
Q 044391          393 LQAMM--PWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQN  441 (691)
Q Consensus       393 ~~~~M--PWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~N  441 (691)
                      +...+  +|..+.-+     .....+.+.|++.+.|+++++|++|+++..+
T Consensus        85 ~~~~~~~~~~~~~d~-----~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  130 (142)
T 3eur_A           85 HRNDFAKEWTNGYDK-----ELVIKNKNLYDLRAIPTLYLLDKNKTVLLKD  130 (142)
T ss_dssp             HGGGSCTTSEEEECT-----TCHHHHTTCSCCTTCSEEEEECTTCBEEEEE
T ss_pred             HHHhcccccccccCc-----cchhhhhhhcCCCcCCeEEEECCCCcEEecC
Confidence            54444  56654333     3333467789999999999999999999765

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=98.85  E-value=9.4e-09  Score=93.15  Aligned_cols=104  Identities=11%  Similarity=0.079  Sum_probs=79.1

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCC
Q 044391          322 SSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMP  398 (691)
Q Consensus       322 ~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MP  398 (691)
                      .+|+.+.+++++||.|+|+|.+.||++|  +.+.|. +|++++   +.+++||.|++ |     +.++...|-+- ..++
T Consensus        12 ~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~---~~~v~vv~v~~-d-----~~~~~~~~~~~-~~~~   81 (151)
T 3raz_A           12 KDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQK---KGSVDMVGIAL-D-----TSDNIGNFLKQ-TPVS   81 (151)
T ss_dssp             TTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSC---TTTEEEEEEES-S-----CHHHHHHHHHH-SCCS
T ss_pred             cCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhc---cCCeEEEEEEC-C-----ChHHHHHHHHH-cCCC
Confidence            5677899999999999999999999877  457788 999885   45799999997 4     24455556443 2455


Q ss_pred             eeeecCCCCCchHHHHHHHHhhC--cCCceEEEEeCCCCceec
Q 044391          399 WYTVQHPTIIEPAVVKYAKEVWK--FSKKAILVPVDPQGRILN  439 (691)
Q Consensus       399 WyAVp~~d~i~~~~~r~ike~f~--~~~iP~LVvL~pqGkv~~  439 (691)
                      |..+...+    ...+.+.+.|+  +.+.|+.+++|++|+++.
T Consensus        82 ~~~~~~~~----~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~  120 (151)
T 3raz_A           82 YPIWRYTG----ANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQ  120 (151)
T ss_dssp             SCEEEECC----SCHHHHHHTTTCCSCCSSEEEEEETTTTEEE
T ss_pred             CceEecCc----cchHHHHHHhCCccCCCCEEEEECCCCcEEE
Confidence            55554433    23455677799  999999999999999865

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=98.84  E-value=3.2e-08  Score=89.99  Aligned_cols=113  Identities=12%  Similarity=0.102  Sum_probs=84.4

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCCh-h--hhHHHH-HHHHhhccCC-CCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391          321 GSSRTRVNIEVLRRKHVLLLISSLDLSD-E--EILVLH-LYREHKAREE-FDYAIVWLPIVDRSIAWDEGYRQKFEQLQA  395 (691)
Q Consensus       321 g~~~~kV~Is~L~gK~VlL~fSal~~~~-~--e~~~L~-iY~~lk~~~~-~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~  395 (691)
                      ..+|+.+++++++||.|+|+|.+.||++ |  +++.|. +|++++...+ .+++||+|++ |.. .-+.+..++|-+-+ 
T Consensus        10 ~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~-d~~-~d~~~~~~~~~~~~-   86 (164)
T 2ggt_A           10 THTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISI-DPE-RDTKEAIANYVKEF-   86 (164)
T ss_dssp             ETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEES-CTT-TCCHHHHHHHHHTT-
T ss_pred             eCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEe-CCC-CCCHHHHHHHHHHc-
Confidence            3567789999999999999999999987 7  457799 9999875322 4899999996 421 00123345565533 


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCcCCce---------------EEEEeCCCCceecc
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKFSKKA---------------ILVPVDPQGRILNQ  440 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP---------------~LVvL~pqGkv~~~  440 (691)
                      .++|..+.-.    ....+.+.+.|++...|               ..+++||+|+++..
T Consensus        87 ~~~~~~l~~~----~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~  142 (164)
T 2ggt_A           87 SPKLVGLTGT----REEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDY  142 (164)
T ss_dssp             CSSCEEEECC----HHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEE
T ss_pred             CCCeEEEeCC----HHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEE
Confidence            4688776542    34556678889999999               89999999999864

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=98.82  E-value=5.8e-09  Score=92.96  Aligned_cols=105  Identities=9%  Similarity=0.097  Sum_probs=74.3

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChhhh--HHH---H-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDEEI--LVL---H-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ  392 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L---~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~  392 (691)
                      +...+|+.+.++.++||.|+|+|.+.||++|..  +.|   . +|++.+.   .+++||.|++        |.+.+....
T Consensus        12 l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~---~~~~~v~v~~--------d~~~~~~~~   80 (142)
T 3ewl_A           12 YVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVEN---GTLRVLAIYP--------DENREEWAT   80 (142)
T ss_dssp             EECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHH---TSEEEEEEEC--------SSCHHHHHH
T ss_pred             EECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhcc---CCeEEEEEEe--------cCCHHHHHH
Confidence            344667889999999999999999999988743  333   3 6777763   3599999986        333444444


Q ss_pred             HhcC--CCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          393 LQAM--MPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       393 ~~~~--MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                      +...  ++|..+.-+     ...-...+.|++.+.|+++++|++|+++.
T Consensus        81 ~~~~~~~~~~~~~d~-----~~~~~~~~~~~v~~~P~~~lid~~G~i~~  124 (142)
T 3ewl_A           81 KAVYMPQGWIVGWNK-----AGDIRTRQLYDIRATPTIYLLDGRKRVIL  124 (142)
T ss_dssp             HHTTSCTTCEEEECT-----TCHHHHTTCSCCCSSSEEEEECTTCBEEE
T ss_pred             HHHHcCCCcceeeCC-----ccchhhHHHcCCCCCCeEEEECCCCCEEe
Confidence            4444  455544333     22222245799999999999999999986

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=98.79  E-value=2.5e-08  Score=88.54  Aligned_cols=111  Identities=15%  Similarity=0.222  Sum_probs=80.0

Q ss_pred             ecCCCCceeecc--eecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH
Q 044391          319 VDGSSRTRVNIE--VLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL  393 (691)
Q Consensus       319 ~~g~~~~kV~Is--~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~  393 (691)
                      +...+|..+.++  .++||.|+|+|.+.||++|  ..+.|. ++++++.  +.+++||.|++ |.    +.+.-++|-. 
T Consensus        16 l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~v~v~~-d~----~~~~~~~~~~-   87 (148)
T 3fkf_A           16 LPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKK--NKNFAMLGISL-DI----DREAWETAIK-   87 (148)
T ss_dssp             EEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTT--CTTEEEEEEEC-CS----CHHHHHHHHH-
T ss_pred             eeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CCCeEEEEEEC-CC----CHHHHHHHHH-
Confidence            344577789999  9999999999999999776  456788 9988731  45699999986 21    1223334432 


Q ss_pred             hcCCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceeccc
Q 044391          394 QAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQN  441 (691)
Q Consensus       394 ~~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~N  441 (691)
                      ...++|..+..+.    .....+.+.|++.+.|+++++|++|+++...
T Consensus        88 ~~~~~~~~~~d~~----~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  131 (148)
T 3fkf_A           88 KDTLSWDQVCDFT----GLSSETAKQYAILTLPTNILLSPTGKILARD  131 (148)
T ss_dssp             HTTCCSEEECCSC----GGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred             HcCCCceEEEccC----CcchHHHHhcCCCCcCEEEEECCCCeEEEec
Confidence            2456777665442    1133556779999999999999999998664

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=98.75  E-value=4.7e-09  Score=93.22  Aligned_cols=108  Identities=14%  Similarity=0.154  Sum_probs=77.9

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA  395 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~  395 (691)
                      +...+|..+.++.++||.|+|+|.+.||++|  +.+.|. +|++++.+   ++++|.|++-+     +.+.-++|-.-+ 
T Consensus        16 l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~v~v~~d~-----~~~~~~~~~~~~-   86 (148)
T 3hcz_A           16 MTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAK---GIQVYAANIER-----KDEEWLKFIRSK-   86 (148)
T ss_dssp             CBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGG---TEEEEEEECCS-----SSHHHHHHHHHH-
T ss_pred             EecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC---CEEEEEEEecC-----CHHHHHHHHHHc-
Confidence            3445677899999999999999999999877  457799 99998743   69999998721     123334444333 


Q ss_pred             CCC-eeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          396 MMP-WYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       396 ~MP-WyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      .++ |..+.-++     ....+.+.|++.+.|+++++|++|+++..
T Consensus        87 ~~~~~~~~~d~~-----~~~~~~~~~~i~~~P~~~lid~~G~i~~~  127 (148)
T 3hcz_A           87 KIGGWLNVRDSK-----NHTDFKITYDIYATPVLYVLDKNKVIIAK  127 (148)
T ss_dssp             TCTTSEEEECTT-----CCCCHHHHHCCCSSCEEEEECTTCBEEEE
T ss_pred             CCCCceEEeccc-----cchhHHHhcCcCCCCEEEEECCCCcEEEe
Confidence            344 44443332     22235667999999999999999999865

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=98.75  E-value=2.4e-08  Score=89.75  Aligned_cols=102  Identities=15%  Similarity=0.137  Sum_probs=74.3

Q ss_pred             CCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCe
Q 044391          323 SRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPW  399 (691)
Q Consensus       323 ~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPW  399 (691)
                      ++..+.++.++||.|+|+|.+.||++|.  .+.|. +|++++.+   +++||.|++ |.    +.++-.+|-+- ...+|
T Consensus        17 ~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~v~v~~-d~----~~~~~~~~~~~-~~~~~   87 (152)
T 3gl3_A           17 KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAK---GFQVVAVNL-DA----KTGDAMKFLAQ-VPAEF   87 (152)
T ss_dssp             SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGG---TEEEEEEEC-CS----SHHHHHHHHHH-SCCCS
T ss_pred             CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC---CeEEEEEEC-CC----CHHHHHHHHHH-cCCCC
Confidence            6678999999999999999999998874  46788 99998754   599999986 21    12233333332 22344


Q ss_pred             eeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          400 YTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       400 yAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      ..+.-++       ..+.+.|++.+.|+++++|++|+++..
T Consensus        88 ~~~~d~~-------~~~~~~~~v~~~P~~~lid~~G~i~~~  121 (152)
T 3gl3_A           88 TVAFDPK-------GQTPRLYGVKGMPTSFLIDRNGKVLLQ  121 (152)
T ss_dssp             EEEECTT-------CHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred             ceeECCc-------chhHHHcCCCCCCeEEEECCCCCEEEE
Confidence            4433322       235677999999999999999999864

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=98.72  E-value=1.8e-08  Score=90.55  Aligned_cols=108  Identities=12%  Similarity=0.123  Sum_probs=79.5

Q ss_pred             eecCCCCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh
Q 044391          318 VVDGSSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ  394 (691)
Q Consensus       318 l~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~  394 (691)
                      -+...+|+.+.+++++||.|+|+|.+.||++|.  .+.|. +|++.+   +.++.+|.|++ |.    +++.-++|-.- 
T Consensus        14 ~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~v~v~~-d~----~~~~~~~~~~~-   84 (152)
T 2lja_A           14 SYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYA---GKDIHFVSLSC-DK----NKKAWENMVTK-   84 (152)
T ss_dssp             EEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHST---TSSEEEEEEEC-CS----CHHHHHHHHHH-
T ss_pred             EeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhc---cCCeEEEEEEc-cC----cHHHHHHHHHh-
Confidence            344467788999999999999999999998874  46788 888875   35699999986 21    12233444332 


Q ss_pred             cCCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          395 AMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       395 ~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      ..++|+.+....  +    ..+.+.|++.+.|+++++|++|+++..
T Consensus        85 ~~~~~~~~~~d~--~----~~~~~~~~v~~~P~~~lid~~G~i~~~  124 (152)
T 2lja_A           85 DQLKGIQLHMGT--D----RTFMDAYLINGIPRFILLDRDGKIISA  124 (152)
T ss_dssp             HTCCSEEEECSS--C----THHHHHTTCCSSCCEEEECTTSCEEES
T ss_pred             cCCCCceeecCc--c----hhHHHHcCcCCCCEEEEECCCCeEEEc
Confidence            367887666543  2    245567999999999999999999874

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=98.71  E-value=1.5e-07  Score=86.26  Aligned_cols=114  Identities=15%  Similarity=0.085  Sum_probs=83.5

Q ss_pred             cCCCCceeecceecCcEEEEEEecCCCCh-h--hhHHHH-HHHHhhccC-CCCeeEEEEecccCCCCCChhhHHHHHHHh
Q 044391          320 DGSSRTRVNIEVLRRKHVLLLISSLDLSD-E--EILVLH-LYREHKARE-EFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ  394 (691)
Q Consensus       320 ~g~~~~kV~Is~L~gK~VlL~fSal~~~~-~--e~~~L~-iY~~lk~~~-~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~  394 (691)
                      ...+|+.+.+++++||.|+|+|.+.||++ |  +++.|. +|+++++.. ..+++||+|++ |... =+.+..+.|-+-+
T Consensus        12 ~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~-d~~~-d~~~~~~~~~~~~   89 (171)
T 2rli_A           12 LDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITV-DPER-DDVEAMARYVQDF   89 (171)
T ss_dssp             EETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEES-CSTT-CCHHHHHHHHHTT
T ss_pred             EeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEE-CCCC-CCHHHHHHHHHHc
Confidence            34567789999999999999999999987 7  457799 999987531 35799999996 4200 0123345554433


Q ss_pred             cCCCeeeecCCCCCchHHHHHHHHhhCcCCce---------------EEEEeCCCCceecc
Q 044391          395 AMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKA---------------ILVPVDPQGRILNQ  440 (691)
Q Consensus       395 ~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP---------------~LVvL~pqGkv~~~  440 (691)
                       ..+|..+.-+    ....+.+.+.|++...|               +.+++|++|+++..
T Consensus        90 -~~~~~~l~~~----~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~  145 (171)
T 2rli_A           90 -HPRLLGLTGS----TKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDY  145 (171)
T ss_dssp             -CTTCCEEECC----HHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEE
T ss_pred             -CCCeEEEeCC----HHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEE
Confidence             4677666532    24456677889999888               99999999999874

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=98.71  E-value=4.5e-08  Score=88.72  Aligned_cols=112  Identities=13%  Similarity=0.062  Sum_probs=74.4

Q ss_pred             CCceeecceecCcEEEEEEecCCCChh--h-hHHHH-HHHHhhccCCCCeeEEEEecccCCCCC-ChhhHHHHHHHhcCC
Q 044391          323 SRTRVNIEVLRRKHVLLLISSLDLSDE--E-ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAW-DEGYRQKFEQLQAMM  397 (691)
Q Consensus       323 ~~~kV~Is~L~gK~VlL~fSal~~~~~--e-~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W-~D~d~~~F~~~~~~M  397 (691)
                      +|+.+.+++++||.|+|+|.+.||++|  + ++.|. +|++++   +.++++|.|++-....+- +.+.-++|-.- ..+
T Consensus        17 ~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~---~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~-~~~   92 (158)
T 3eyt_A           17 SATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFP---EDKVAVLGLHTVFEHHEAMTPISLKAFLHE-YRI   92 (158)
T ss_dssp             CSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSC---TTTEEEEEEECCCSCGGGSCHHHHHHHHHH-TTC
T ss_pred             CCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhC---cCCEEEEEEEecccccccCCHHHHHHHHHH-cCC
Confidence            467899999999999999999999776  4 67799 999986   346999999862100000 13333444332 233


Q ss_pred             CeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          398 PWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       398 PWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      +|-.+--++  .......+.+.|++.+.|+.+++|++|+++..
T Consensus        93 ~~~~~~d~~--~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  133 (158)
T 3eyt_A           93 KFPVGVDQP--GDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAH  133 (158)
T ss_dssp             CSCEEEECC--CSSSSCHHHHHTTCCSSSEEEEECTTSEEEEE
T ss_pred             CceEEEcCc--cchhhHHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence            433222222  00111145667999999999999999999864

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=98.69  E-value=3.8e-08  Score=88.74  Aligned_cols=106  Identities=13%  Similarity=0.195  Sum_probs=76.1

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA  395 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~  395 (691)
                      +...+|+.+.++.++||.|+|+|.+.||++|.  .+.|. ++++++.   .+++||.|++-+     +.+.-+.|-.-+ 
T Consensus        11 l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~---~~v~vv~v~~d~-----~~~~~~~~~~~~-   81 (151)
T 2f9s_A           11 LEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKS---QGVEIVAVNVGE-----SKIAVHNFMKSY-   81 (151)
T ss_dssp             EECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG---GTEEEEEEEESC-----CHHHHHHHHHHH-
T ss_pred             eEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc---CCeEEEEEECCC-----CHHHHHHHHHHc-
Confidence            33456778999999999999999999998774  46788 9998874   369999998722     233344454332 


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      .++|-.+.-++       ..+.+.|++.+.|+++++|++|+++..
T Consensus        82 ~~~~~~~~d~~-------~~~~~~~~v~~~P~~~lid~~G~i~~~  119 (151)
T 2f9s_A           82 GVNFPVVLDTD-------RQVLDAYDVSPLPTTFLINPEGKVVKV  119 (151)
T ss_dssp             TCCSCEEEETT-------SHHHHHTTCCSSCEEEEECTTSEEEEE
T ss_pred             CCCceEEECCc-------hHHHHhcCCCCCCeEEEECCCCcEEEE
Confidence            34443332221       235567999999999999999999864

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=98.64  E-value=2.7e-07  Score=84.20  Aligned_cols=119  Identities=16%  Similarity=0.196  Sum_probs=78.8

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEeccc--CCCCCChhhHHHH--H
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVD--RSIAWDEGYRQKF--E  391 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd--~s~~W~D~d~~~F--~  391 (691)
                      +...+|+.+.+++++||.|+|+|.+.||++|  +++.|. +|++++.+   +++||.|++-+  ....++.++-++|  +
T Consensus        16 l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---~~~vv~v~~d~~~~~~~~~~~~~~~~~~~   92 (169)
T 2v1m_A           16 VKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGK---GLRILAFPCNQFGGQEPWAEAEIKKFVTE   92 (169)
T ss_dssp             EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---TEEEEEEECCCSTTCCCSCHHHHHHHHHH
T ss_pred             eecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcC---CeEEEEEECCccCCCCCCCHHHHHHHHHH
Confidence            3446678899999999999999999999887  567799 99999743   59999998621  0012344556677  4


Q ss_pred             HHhcCCCeee-ecCCCCCchHHHHHHHHh-hC-----cCCceEEEEeCCCCceecc
Q 044391          392 QLQAMMPWYT-VQHPTIIEPAVVKYAKEV-WK-----FSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       392 ~~~~~MPWyA-Vp~~d~i~~~~~r~ike~-f~-----~~~iP~LVvL~pqGkv~~~  440 (691)
                      .+.-..|.++ +........+..+++++. ++     ++.+|..+++|++|+++..
T Consensus        93 ~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~  148 (169)
T 2v1m_A           93 KYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKR  148 (169)
T ss_dssp             HHCCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEE
T ss_pred             hcCCCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEE
Confidence            4444444433 111111111244555543 24     5567999999999999865

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=98.64  E-value=7.2e-08  Score=87.31  Aligned_cols=113  Identities=12%  Similarity=0.063  Sum_probs=74.5

Q ss_pred             CCceeecceecCcEEEEEEecCCCChh--h-hHHHH-HHHHhhccCCCCeeEEEEecccCCCC-CChhhHHHHHHHhcCC
Q 044391          323 SRTRVNIEVLRRKHVLLLISSLDLSDE--E-ILVLH-LYREHKAREEFDYAIVWLPIVDRSIA-WDEGYRQKFEQLQAMM  397 (691)
Q Consensus       323 ~~~kV~Is~L~gK~VlL~fSal~~~~~--e-~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~-W~D~d~~~F~~~~~~M  397 (691)
                      +|+.+.+++++||.|+|+|.+.||++|  + ++.|. +|++++.   .+++||.|++-....+ =+.+.-++|-+- ..+
T Consensus        19 ~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~---~~v~~v~v~~~~~~~~~~~~~~~~~~~~~-~~~   94 (160)
T 3lor_A           19 NHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDE---SQVQVIGLHSVFEHHDVMTPEALKVFIDE-FGI   94 (160)
T ss_dssp             SSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCT---TTEEEEEEECCCSCGGGSCHHHHHHHHHH-TTC
T ss_pred             CCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCc---CCcEEEEEeccccccccCCHHHHHHHHHH-cCC
Confidence            457799999999999999999999876  3 56799 9999863   4699999986200000 023333444332 233


Q ss_pred             CeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          398 PWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       398 PWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      +|-.+--++. .....+.+.+.|++.++|+.+++|++|+++..
T Consensus        95 ~~~~~~d~~~-~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  136 (160)
T 3lor_A           95 KFPVAVDMPR-EGQRIPSTMKKYRLEGTPSIILADRKGRIRQV  136 (160)
T ss_dssp             CSCEEEECCC-TTCSSCHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred             CCcEEECCcc-ccchhhhHHHhcccCccceEEEECCCCcEEEE
Confidence            3332222221 01112236677999999999999999999864

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.63  E-value=3.4e-07  Score=84.18  Aligned_cols=114  Identities=15%  Similarity=0.167  Sum_probs=77.1

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCC-hh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCC-ChhhHHHHHHH
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLS-DE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAW-DEGYRQKFEQL  393 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~-~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W-~D~d~~~F~~~  393 (691)
                      +...+|+.+++++++||.|+|+|-+.||+ +|  +++.|. +|++++++ +.+++||.|++ |.  +. +.+..++|-+-
T Consensus        18 l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~-~~~~~vv~is~-d~--~~d~~~~~~~~~~~   93 (174)
T 1xzo_A           18 FQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAE-NIDVRIISFSV-DP--ENDKPKQLKKFAAN   93 (174)
T ss_dssp             EECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHT-TCCCEEEEEES-CT--TTCCHHHHHHHHTT
T ss_pred             EEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhc-CCcEEEEEEEe-CC--CCCCHHHHHHHHHH
Confidence            34567888999999999999999999997 66  567799 99999876 45899999996 31  00 12233444332


Q ss_pred             hcCCCe---eeecCCCCCchHHHH-HHHHh-----------hCcCCceEEEEeCCCCceecc
Q 044391          394 QAMMPW---YTVQHPTIIEPAVVK-YAKEV-----------WKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       394 ~~~MPW---yAVp~~d~i~~~~~r-~ike~-----------f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      + .+++   ..+.-++   .+..+ +-...           +++...|+.+++|++|+++..
T Consensus        94 ~-~~~~~~~~~l~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~  151 (174)
T 1xzo_A           94 Y-PLSFDNWDFLTGYS---QSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKD  151 (174)
T ss_dssp             S-CCCGGGEEEEBCSC---HHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred             c-CCCCcceEEEeCCC---HHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEE
Confidence            2 3343   3333222   33333 33223           346789999999999999864

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.62  E-value=1.4e-07  Score=90.89  Aligned_cols=115  Identities=10%  Similarity=0.109  Sum_probs=78.7

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCCh-h--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSD-E--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ  394 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~-~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~  394 (691)
                      +...+|+.|.+++++||.|+|+|.+.||++ |  +++.|. +|++++++.+.+++||.|++ |...+ +.+..+.|-+-+
T Consensus        26 l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~-D~~~d-~~~~~~~~~~~~  103 (200)
T 2b7k_A           26 LEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITC-DPARD-SPAVLKEYLSDF  103 (200)
T ss_dssp             EEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEES-CTTTC-CHHHHHHHHTTS
T ss_pred             EEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEEC-CCCCC-CHHHHHHHHHHc
Confidence            344677889999999999999999999987 7  457799 99999854356899999996 31000 122233443322


Q ss_pred             cCCCeeeecCCCCCchHHHHHHHHhhCcC-Cce---------------EEEEeCCCCceecc
Q 044391          395 AMMPWYTVQHPTIIEPAVVKYAKEVWKFS-KKA---------------ILVPVDPQGRILNQ  440 (691)
Q Consensus       395 ~~MPWyAVp~~d~i~~~~~r~ike~f~~~-~iP---------------~LVvL~pqGkv~~~  440 (691)
                       ..+|..++-.    ....+.+.+.|++. ++|               ..+++||+|+++..
T Consensus       104 -~~~~~~l~~~----~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~  160 (200)
T 2b7k_A          104 -HPSILGLTGT----FDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDA  160 (200)
T ss_dssp             -CTTCEEEECC----HHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEE
T ss_pred             -CCCceEEeCC----HHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEE
Confidence             3567766642    24455666778887 454               78999999999854

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=98.61  E-value=6.2e-08  Score=83.82  Aligned_cols=110  Identities=13%  Similarity=0.117  Sum_probs=75.4

Q ss_pred             cCCCCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcC
Q 044391          320 DGSSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAM  396 (691)
Q Consensus       320 ~g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~  396 (691)
                      ...+|+.+.++.++||.|+|+|.+.||++|.  .+.|. ++++.    +.++.+|.|...+.+   .+.+.+....+...
T Consensus         8 ~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~----~~~~~~v~i~~~~~~---~~~~~~~~~~~~~~   80 (138)
T 4evm_A            8 MGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEA----GDDYVVLTVVSPGHK---GEQSEADFKNWYKG   80 (138)
T ss_dssp             EBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTC----TTTEEEEEEECTTST---TCCCHHHHHHHHTT
T ss_pred             ECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHh----CCCcEEEEEEcCCCC---chhhHHHHHHHHhh
Confidence            3456778999999999999999999998774  45677 77762    456888888432211   23455566666665


Q ss_pred             CCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          397 MPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       397 MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      .++...|.-  .+.  ...+.+.|++.+.|+++++|++|+++..
T Consensus        81 ~~~~~~~~~--~d~--~~~~~~~~~v~~~P~~~lid~~G~i~~~  120 (138)
T 4evm_A           81 LDYKNLPVL--VDP--SGKLLETYGVRSYPTQAFIDKEGKLVKT  120 (138)
T ss_dssp             CCCTTCCEE--ECT--TCHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred             cCCCCeeEE--ECc--chHHHHHcCcccCCeEEEECCCCcEEEe
Confidence            544222211  111  1245667999999999999999999754

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=98.61  E-value=1.4e-07  Score=85.56  Aligned_cols=109  Identities=6%  Similarity=0.040  Sum_probs=74.6

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA  395 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~  395 (691)
                      +...+|+.+.++.++||.|+|+|.+.||++|.  .+.|. +|++++.   .++++|.|++ |.    +...-++|-.- .
T Consensus        19 l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~---~~v~~v~v~~-d~----~~~~~~~~~~~-~   89 (165)
T 3or5_A           19 GVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWAS---RGFTFVGIAV-NE----QLPNVKNYMKT-Q   89 (165)
T ss_dssp             EECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTT---TTEEEEEEEC-SC----CHHHHHHHHHH-H
T ss_pred             eeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhcc---CCeEEEEEEC-CC----CHHHHHHHHHH-c
Confidence            34467788999999999999999999998874  46788 9999873   4599999986 21    13333445332 3


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhh--CcCCceEEEEeCCCCceecc
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVW--KFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f--~~~~iP~LVvL~pqGkv~~~  440 (691)
                      .++|-.+.-+    .+..+.+...+  ++.+.|+++++|++|+++..
T Consensus        90 ~~~~~~~~~~----~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~  132 (165)
T 3or5_A           90 GIIYPVMMAT----PELIRAFNGYIDGGITGIPTSFVIDASGNVSGV  132 (165)
T ss_dssp             TCCSCEEECC----HHHHHHHHTTSTTCSCSSSEEEEECTTSBEEEE
T ss_pred             CCCCceEecC----HHHHHHHhhhhccCCCCCCeEEEECCCCcEEEE
Confidence            4555444322    22222221111  79999999999999999754

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=98.60  E-value=1.5e-07  Score=86.06  Aligned_cols=120  Identities=13%  Similarity=0.043  Sum_probs=83.6

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA  395 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~  395 (691)
                      +...+|+.+.++.++||.|+|+|.+.||++|.  ++.|. +|++++   +.++.+|.|+. |       .+.++|-. ..
T Consensus        26 l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~v~~-d-------~~~~~~~~-~~   93 (158)
T 3hdc_A           26 LPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFP---KGDLVVLAVNV-E-------KRFPEKYR-RA   93 (158)
T ss_dssp             EECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSS---TTSEEEEEEEC-S-------SSCCGGGG-GC
T ss_pred             eEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcc---cCCeEEEEEeC-C-------HHHHHHHH-Hc
Confidence            44567788999999999999999999998774  46788 998876   34688888875 2       22222322 23


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceec-------ccHHHHHHHhCcccccCC
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILN-------QNAFHMLWIWGNLAFPFS  457 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~-------~NA~~mI~~wG~~AFPFT  457 (691)
                      .++|-.+.-++       ..+.+.|++.+.|+++++|++|+++.       .+.-+++..+...-|||.
T Consensus        94 ~~~~~~~~d~~-------~~~~~~~~v~~~P~~~lid~~G~i~~~~~G~~~~~~~~~~~~~~~~~~~~~  155 (158)
T 3hdc_A           94 PVSFNFLSDAT-------GQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLEGHHH  155 (158)
T ss_dssp             CCSCEEEECTT-------SHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTTC----
T ss_pred             CCCceEEECch-------HHHHHHhCCCCcceEEEEcCCCCEEEEEeCCCccchHHHHHHHHhhccccc
Confidence            45554443222       24567799999999999999999874       456667777776666663

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.60  E-value=2.2e-07  Score=88.39  Aligned_cols=118  Identities=14%  Similarity=0.146  Sum_probs=81.0

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccC---CCCCChhhHHHHH-
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDR---SIAWDEGYRQKFE-  391 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~---s~~W~D~d~~~F~-  391 (691)
                      +...+|+.+++++++||.|+|+|.+.||++|  +++.|. +|++++.+   +++||.|++ |.   -..++.++.++|- 
T Consensus        33 l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~---~v~vv~vs~-d~~~~~~~~~~~~~~~~~~  108 (190)
T 2vup_A           33 VLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ---GFTVLAFPC-NQFGGQEPGNEEEIKEFVC  108 (190)
T ss_dssp             CBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---TCEEEEEEC-CCSTTCCCSCHHHHHHHHH
T ss_pred             EEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcC---CeEEEEEEc-CccCCCCCCCHHHHHHHHH
Confidence            3345677899999999999999999999887  567799 99999743   599999986 21   0112344555664 


Q ss_pred             -HHhcCCCeeee-cCCCCCchHHHHHHH-HhhCcCCce------EEEEeCCCCceecc
Q 044391          392 -QLQAMMPWYTV-QHPTIIEPAVVKYAK-EVWKFSKKA------ILVPVDPQGRILNQ  440 (691)
Q Consensus       392 -~~~~~MPWyAV-p~~d~i~~~~~r~ik-e~f~~~~iP------~LVvL~pqGkv~~~  440 (691)
                       .+.-..|+++- ........+..+++. +.+++.+.|      +.+++|++|+++..
T Consensus       109 ~~~~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~  166 (190)
T 2vup_A          109 TKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVER  166 (190)
T ss_dssp             HHHCCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEE
T ss_pred             HhcCCCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEE
Confidence             44445555541 211111122445444 447888999      99999999999865

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.60  E-value=2.6e-07  Score=85.21  Aligned_cols=106  Identities=18%  Similarity=0.275  Sum_probs=79.3

Q ss_pred             eecCCCCceeecceecCcE-EEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH
Q 044391          318 VVDGSSRTRVNIEVLRRKH-VLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ  392 (691)
Q Consensus       318 l~~g~~~~kV~Is~L~gK~-VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~  392 (691)
                      -+...+|+.+.+++++||. |+|+|- +.||++|  +++.|. +|++++.   .+++||.|+. |     +.+..++|-+
T Consensus        12 ~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~---~~v~vv~vs~-d-----~~~~~~~~~~   82 (161)
T 3drn_A           12 EGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKD---YDVVVIGVSS-D-----DINSHKRFKE   82 (161)
T ss_dssp             EEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHT---TCEEEEEEES-C-----CHHHHHHHHH
T ss_pred             EeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHH---cCCEEEEEeC-C-----CHHHHHHHHH
Confidence            3344677889999999998 999998 9999776  557799 9999984   3599999986 4     3445556654


Q ss_pred             HhcCCCeeeecCCCCCchHHHHHHHHhhCcCC----ceEEEEeCCCCceecc
Q 044391          393 LQAMMPWYTVQHPTIIEPAVVKYAKEVWKFSK----KAILVPVDPQGRILNQ  440 (691)
Q Consensus       393 ~~~~MPWyAVp~~d~i~~~~~r~ike~f~~~~----iP~LVvL~pqGkv~~~  440 (691)
                      -+ .+||..+.-++       ..+.+.|++.+    .|..+++|++|+++..
T Consensus        83 ~~-~~~~~~~~d~~-------~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~  126 (161)
T 3drn_A           83 KY-KLPFILVSDPD-------KKIRELYGAKGFILPARITFVIDKKGIIRHI  126 (161)
T ss_dssp             HT-TCCSEEEECTT-------SHHHHHTTCCCSSSCCCEEEEECTTSBEEEE
T ss_pred             Hh-CCCceEEECCc-------HHHHHHcCCCCcCcccceEEEECCCCEEEEE
Confidence            33 45655444332       24556699999    9999999999999754

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=98.60  E-value=9.9e-08  Score=90.67  Aligned_cols=118  Identities=11%  Similarity=0.113  Sum_probs=77.3

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccC---CCCCChhhHHHHHH
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDR---SIAWDEGYRQKFEQ  392 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~---s~~W~D~d~~~F~~  392 (691)
                      +...+|+.|.+++++||.|+|+|-+.||++|  +++.|. +|++++.+   +++||.|++ |.   ....+.++-++|-.
T Consensus        31 l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~---~~~vi~is~-d~~~~~e~~~~~~~~~~~~  106 (187)
T 3dwv_A           31 VLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ---GFTVLAFPS-NQFGGQEPGNEEEIKEFVC  106 (187)
T ss_dssp             CBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGG---TCEEEEEEB-CCCSSCSSSBTTHHHHSCC
T ss_pred             EEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhC---CeEEEEEEC-cccCCCCCCCHHHHHHHHH
Confidence            3445677899999999999999999999776  568899 99999854   599999996 21   00112223333322


Q ss_pred             HhcCCCeeeecC---CCCCchHHHHHHHH----hhCcCCce---EEEEeCCCCceecc
Q 044391          393 LQAMMPWYTVQH---PTIIEPAVVKYAKE----VWKFSKKA---ILVPVDPQGRILNQ  440 (691)
Q Consensus       393 ~~~~MPWyAVp~---~d~i~~~~~r~ike----~f~~~~iP---~LVvL~pqGkv~~~  440 (691)
                      -.-.++|-.+..   ......+..+++++    .+++..+|   +.+++|++|+++..
T Consensus       107 ~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~  164 (187)
T 3dwv_A          107 TKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVER  164 (187)
T ss_dssp             BCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEE
T ss_pred             hccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEE
Confidence            111444443321   11111234556654    34667788   99999999999876

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=98.59  E-value=2.9e-07  Score=86.52  Aligned_cols=115  Identities=12%  Similarity=0.085  Sum_probs=81.4

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCC-hh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLS-DE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ  394 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~-~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~  394 (691)
                      +...+|+.|++++++||.|+|+|-+.||+ .|  +++.|. +|+++++. +.+++||.|++ |+  .=+.+..++|-+-+
T Consensus        13 l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~-~~~~~vv~is~-d~--~d~~~~~~~~~~~~   88 (170)
T 3me7_A           13 LVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTP-GKDFWVITFTF-DP--KDTLEDIKRFQKEY   88 (170)
T ss_dssp             EEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCB-TTTBEEEEEEC-CT--TCCHHHHHHHHHHT
T ss_pred             EEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhc-CCceEEEEEEC-CC--CCCHHHHHHHHHHc
Confidence            34467788999999999999999999996 35  567799 99999754 67899999997 42  00234445665544


Q ss_pred             c-CC-CeeeecCCCCCchHHHHHHHHhhCc---------CCceEEEEeCCCCceecc
Q 044391          395 A-MM-PWYTVQHPTIIEPAVVKYAKEVWKF---------SKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       395 ~-~M-PWyAVp~~d~i~~~~~r~ike~f~~---------~~iP~LVvL~pqGkv~~~  440 (691)
                      . .. .|.-+--.   +....+.+.+.|++         ...|.++++||+|+++..
T Consensus        89 ~~~~~~w~~l~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~  142 (170)
T 3me7_A           89 GIDGKGWKVVKAK---TSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDY  142 (170)
T ss_dssp             TCCSSSEEEEEES---SHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEE
T ss_pred             CCCCCCeEEEeCC---CHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEE
Confidence            3 33 37433222   23456666777664         456899999999999853

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=98.58  E-value=6.4e-08  Score=88.00  Aligned_cols=107  Identities=8%  Similarity=-0.023  Sum_probs=77.3

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCC
Q 044391          322 SSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMP  398 (691)
Q Consensus       322 ~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MP  398 (691)
                      .+|+.+.++.++||.|+|+|.+.||++|.  .+.|. +|++++.   .+++||.|++-+..   .+...+.+..+...+.
T Consensus        26 ~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~v~~~~~~---~~~~~~~~~~~~~~~~   99 (164)
T 2h30_A           26 ADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKF---SSANLITVASPGFL---HEKKDGEFQKWYAGLN   99 (164)
T ss_dssp             TTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGG---TTSEEEEEECTTST---TCCCTTHHHHHHTTSC
T ss_pred             CCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc---CCcEEEEEEcCCCc---cccCHHHHHHHHHhCC
Confidence            45667899999999999999999998874  57788 9988864   35999999862110   1223455666666544


Q ss_pred             e--eeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          399 W--YTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       399 W--yAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      |  +.+-...      ...+.+.|++.+.|+++++|++|+++..
T Consensus       100 ~~~~~~~~d~------~~~~~~~~~v~~~P~~~lid~~G~i~~~  137 (164)
T 2h30_A          100 YPKLPVVTDN------GGTIAQNLNISVYPSWALIGKDGDVQRI  137 (164)
T ss_dssp             CTTSCEEECT------TCHHHHHTTCCSSSEEEEECTTSCEEEE
T ss_pred             CCcceEEEcC------chHHHHHcCCCccceEEEECCCCcEEEE
Confidence            3  3443322      2245667999999999999999998853

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.58  E-value=7.4e-08  Score=88.28  Aligned_cols=104  Identities=12%  Similarity=0.071  Sum_probs=72.2

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCC--------------CCCC
Q 044391          321 GSSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRS--------------IAWD  383 (691)
Q Consensus       321 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s--------------~~W~  383 (691)
                      ..+++.+.++.++||.|+|+|.+.||++|.  .+.|. +|++.+     +++||.|++ |+.              ..=+
T Consensus        24 ~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-----~v~vv~i~~-d~~~~~~~~~~~~~~~~~~~~   97 (165)
T 3ha9_A           24 TIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-----EISVIAIDF-WTAEALKALGLNKPGYPPPDT   97 (165)
T ss_dssp             BTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-----TEEEEEEEC-CSHHHHHHHTCCSTTSCCCCC
T ss_pred             cCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-----CcEEEEEEe-cccccccccccccccCCCCCC
Confidence            356778999999999999999999998874  46688 888764     699999986 200              0002


Q ss_pred             hhhHHHHHHHhcCC-CeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          384 EGYRQKFEQLQAMM-PWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       384 D~d~~~F~~~~~~M-PWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                      .++-++|-.-+ .+ +|-.+-- +       ..+.+.|++.+.|+++++|++|+++.
T Consensus        98 ~~~~~~~~~~~-~~~~~~~~~d-~-------~~~~~~~~v~~~P~~~lid~~G~i~~  145 (165)
T 3ha9_A           98 PEMFRKFIANY-GDPSWIMVMD-D-------GSLVEKFNVRSIDYIVIMDKSSNVLY  145 (165)
T ss_dssp             HHHHHHHHHHH-SCTTSEEEEC-C-------SHHHHHTTCCSSSEEEEEETTCCEEE
T ss_pred             HHHHHHHHHHc-CCCCeeEEeC-h-------HHHHHHhCCCCceEEEEEcCCCcEEE
Confidence            23334443322 23 3333222 1       24556689999999999999999988

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=98.57  E-value=1.4e-07  Score=83.18  Aligned_cols=105  Identities=11%  Similarity=0.130  Sum_probs=73.2

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA  395 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~  395 (691)
                      +...++..+.++. +||.|+|+|.+.||++|.  .+.|. +|++++   +.++++|.|++-+.     +.+.+....+..
T Consensus        20 l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~v~~d~~-----~~~~~~~~~~~~   90 (145)
T 3erw_A           20 MKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHP---SDSVKLVTVNLVNS-----EQNQQVVEDFIK   90 (145)
T ss_dssp             EECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCC---CSSEEEEEEECGGG-----SSCHHHHHHHHH
T ss_pred             eecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcC---CCCEEEEEEEccCC-----cCCHHHHHHHHH
Confidence            4445677899999 999999999999998874  46688 888875   34699999987221     113333333322


Q ss_pred             --CCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          396 --MMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       396 --~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                        ..+|-.+.-++       ..+.+.|++.+.|+++++|++|+++.
T Consensus        91 ~~~~~~~~~~d~~-------~~~~~~~~v~~~P~~~lid~~G~i~~  129 (145)
T 3erw_A           91 ANKLTFPIVLDSK-------GELMKEYHIITIPTSFLLNEKGEIEK  129 (145)
T ss_dssp             HTTCCSCEEECSS-------SHHHHHTTCCEESEEEEECTTCCEEE
T ss_pred             HcCCceeEEEcCc-------hhHHHhcCcCccCeEEEEcCCCcEEE
Confidence              33433322221       24567799999999999999999875

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.57  E-value=1.6e-07  Score=92.39  Aligned_cols=103  Identities=14%  Similarity=0.110  Sum_probs=78.4

Q ss_pred             CCceeecceecCcEEEEEEec-CCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh----
Q 044391          323 SRTRVNIEVLRRKHVLLLISS-LDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ----  394 (691)
Q Consensus       323 ~~~kV~Is~L~gK~VlL~fSa-l~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~----  394 (691)
                      +|+.|.+++++||.|+|+|-+ .||++|  +++.|. +|++++.   .+++||.|++ |     +.++.+.|.+..    
T Consensus        58 ~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~---~~v~vv~Is~-D-----~~~~~~~~~~~~~~~~  128 (222)
T 3ztl_A           58 EFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNS---RNCQVIACST-D-----SQYSHLAWDNLDRKSG  128 (222)
T ss_dssp             EEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHT---TTEEEEEEES-S-----CHHHHHHHHHSCGGGT
T ss_pred             CCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEEC-C-----CHHHHHHHHHHhhhhc
Confidence            347899999999999999996 999876  567799 9999983   4699999996 4     245566676543    


Q ss_pred             --cCCCeeeecCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceeccc
Q 044391          395 --AMMPWYTVQHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILNQN  441 (691)
Q Consensus       395 --~~MPWyAVp~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~N  441 (691)
                        ..++|..+.-++       ..+.+.|++.      ..|..+++|++|+++...
T Consensus       129 ~~~~~~~~~l~D~~-------~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~  176 (222)
T 3ztl_A          129 GLGHMKIPLLADRK-------QEISKAYGVFDEEDGNAFRGLFIIDPNGILRQIT  176 (222)
T ss_dssp             SCCSCSSCEEECSS-------SHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEE
T ss_pred             cccccceeEEeCCc-------hHHHHHcCCeecCCCCccceEEEECCCCeEEEEE
Confidence              156666554432       2345568888      899999999999998763

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=98.57  E-value=5e-07  Score=82.56  Aligned_cols=118  Identities=13%  Similarity=0.278  Sum_probs=78.5

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccC---CCCCChhhHHHHHH
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDR---SIAWDEGYRQKFEQ  392 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~---s~~W~D~d~~~F~~  392 (691)
                      +...+|+.+.+++++||.|+|+|.+.||++|  +++.|. +|++++.+   +++||.|++ |.   ...-+.+.-++|-.
T Consensus        17 l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~---~~~vv~vs~-d~~~~~~~~~~~~~~~~~~   92 (170)
T 2p5q_A           17 VKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ---GLEILAFPC-NQFGEEEPGTNDQITDFVC   92 (170)
T ss_dssp             EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---TEEEEEEEC-CTTTTCCCSCHHHHHHHHH
T ss_pred             EEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccC---CEEEEEEEC-CCCCCCCCCCHHHHHHHHH
Confidence            3445677899999999999999999999887  457799 99998743   699999986 21   00012334455544


Q ss_pred             --HhcCCCeee-ecCCCCCchHHHHHHH-HhhCc--CCce---EEEEeCCCCceecc
Q 044391          393 --LQAMMPWYT-VQHPTIIEPAVVKYAK-EVWKF--SKKA---ILVPVDPQGRILNQ  440 (691)
Q Consensus       393 --~~~~MPWyA-Vp~~d~i~~~~~r~ik-e~f~~--~~iP---~LVvL~pqGkv~~~  440 (691)
                        +.-..|++. +.-......+..++++ +.+++  .++|   +.+++|++|+++..
T Consensus        93 ~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~  149 (170)
T 2p5q_A           93 TRFKSEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDR  149 (170)
T ss_dssp             HHTCCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEE
T ss_pred             HhcCCCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEe
Confidence              233445543 1111111123445554 34566  7889   99999999999875

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.56  E-value=9.8e-08  Score=83.48  Aligned_cols=102  Identities=12%  Similarity=0.012  Sum_probs=74.0

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA  395 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~  395 (691)
                      +...+|..+.++.++||.|+|+|.+.||++|.  .+.|. ++++.+     +++++.|++-+     +.++-++|-.- .
T Consensus         9 l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~v~~~~-----~~~~~~~~~~~-~   77 (136)
T 1lu4_A            9 ATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-----AVTFVGIATRA-----DVGAMQSFVSK-Y   77 (136)
T ss_dssp             EEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEECSS-----CHHHHHHHHHH-H
T ss_pred             eecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-----CcEEEEEEcCC-----CHHHHHHHHHH-c
Confidence            33456778999999999999999999998874  46677 887764     68999998621     23444555443 2


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                      .++|..+.-++       ..+.+.|++.+.|+++++|++|+++
T Consensus        78 ~~~~~~~~d~~-------~~~~~~~~i~~~P~~~lid~~G~i~  113 (136)
T 1lu4_A           78 NLNFTNLNDAD-------GVIWARYNVPWQPAFVFYRADGTST  113 (136)
T ss_dssp             TCCSEEEECTT-------SHHHHHTTCCSSSEEEEECTTSCEE
T ss_pred             CCCceEEECCc-------hhHHHhcCCCCCCEEEEECCCCcEE
Confidence            44555443322       2355679999999999999999997

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=98.54  E-value=2.4e-07  Score=83.37  Aligned_cols=108  Identities=12%  Similarity=0.091  Sum_probs=76.7

Q ss_pred             eecCCCCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh
Q 044391          318 VVDGSSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ  394 (691)
Q Consensus       318 l~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~  394 (691)
                      -+...+|..+.++.++||.|+|+|.+.||++|.  .+.|. +|++++   +.++++|.|++ |.   -+.+..++|-...
T Consensus        12 ~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~v~~-d~---~~~~~~~~~~~~~   84 (154)
T 3kcm_A           12 TLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMA---GKPFRMLCVSI-DE---GGKVAVEEFFRKT   84 (154)
T ss_dssp             EEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTT---TSSEEEEEEEC-CT---THHHHHHHHHHHH
T ss_pred             EEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc---cCCeEEEEEEc-CC---cchHHHHHHHHHc
Confidence            344467788999999999999999999998764  46788 988876   34699999986 31   0123334444333


Q ss_pred             cCCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          395 AMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       395 ~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                       ..+|..+.-++       ..+.+.|++.+.|..+++|++|+++..
T Consensus        85 -~~~~~~~~d~~-------~~~~~~~~v~~~P~~~lid~~G~i~~~  122 (154)
T 3kcm_A           85 -GFTLPVLLDAD-------KRVGKLYGTTGVPETFVIDRHGVILKK  122 (154)
T ss_dssp             -CCCCCEEECTT-------CHHHHHHTCCSBCEEEEECTTSBEEEE
T ss_pred             -CCCeeEEecCc-------hHHHHHhCCCCCCeEEEECCCCcEEEE
Confidence             34554443222       235667999999999999999999764

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.52  E-value=1.4e-07  Score=89.98  Aligned_cols=100  Identities=16%  Similarity=0.102  Sum_probs=75.0

Q ss_pred             ceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh---cCC
Q 044391          325 TRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ---AMM  397 (691)
Q Consensus       325 ~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~---~~M  397 (691)
                      +.|++++++||.|+|+|- +.||++|  +++.|. +|++++.   .+++||.|++ |     +.+..++|-+-+   ..+
T Consensus        36 ~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~---~~v~vv~Vs~-d-----~~~~~~~~~~~~~~~~~~  106 (195)
T 2bmx_A           36 TTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFED---RDAQILGVSI-D-----SEFAHFQWRAQHNDLKTL  106 (195)
T ss_dssp             EEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHT---TTEEEEEEES-S-----CHHHHHHHHHHCTTGGGC
T ss_pred             cEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHH---CCCEEEEEEC-C-----CHHHHHHHHHHhccccCC
Confidence            789999999999999999 9999776  567799 9999873   4799999986 4     134455665443   134


Q ss_pred             CeeeecCCCCCchHHHHHHHHhhCcC-----CceEEEEeCCCCceecc
Q 044391          398 PWYTVQHPTIIEPAVVKYAKEVWKFS-----KKAILVPVDPQGRILNQ  440 (691)
Q Consensus       398 PWyAVp~~d~i~~~~~r~ike~f~~~-----~iP~LVvL~pqGkv~~~  440 (691)
                      +|..+.-++       ..+.+.|++.     ..|+++++|++|+++..
T Consensus       107 ~~~~~~d~~-------~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~  147 (195)
T 2bmx_A          107 PFPMLSDIK-------RELSQAAGVLNADGVADRVTFIVDPNNEIQFV  147 (195)
T ss_dssp             CSCEEECTT-------SHHHHHHTCBCTTSSBCEEEEEECTTSBEEEE
T ss_pred             ceeEEeCCc-------hHHHHHhCCcccCCCccceEEEEcCCCeEEEE
Confidence            544333221       2445668999     99999999999999875

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=98.52  E-value=4.5e-07  Score=83.07  Aligned_cols=102  Identities=14%  Similarity=0.122  Sum_probs=76.3

Q ss_pred             CCCCceeecceecCcEEEEEEec-CCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcC
Q 044391          321 GSSRTRVNIEVLRRKHVLLLISS-LDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAM  396 (691)
Q Consensus       321 g~~~~kV~Is~L~gK~VlL~fSa-l~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~  396 (691)
                      ..+|+.|.+++++||.|+|+|-+ .||++|  +++.|. .|++++.   .+++||.|+. |     +.+..++|-+-+ .
T Consensus        22 ~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~---~~~~vv~vs~-d-----~~~~~~~~~~~~-~   91 (163)
T 3gkn_A           22 LSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDK---AGAKILGVSR-D-----SVKSHDNFCAKQ-G   91 (163)
T ss_dssp             CSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHH---TTCEEEEEES-S-----CHHHHHHHHHHH-C
T ss_pred             CCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHH---CCCEEEEEeC-C-----CHHHHHHHHHHh-C
Confidence            46778999999999999888887 899776  557799 9999984   3599999996 3     345556675533 4


Q ss_pred             CCeeeecCCCCCchHHHHHHHHhhCcCC------------ceEEEEeCCCCceec
Q 044391          397 MPWYTVQHPTIIEPAVVKYAKEVWKFSK------------KAILVPVDPQGRILN  439 (691)
Q Consensus       397 MPWyAVp~~d~i~~~~~r~ike~f~~~~------------iP~LVvL~pqGkv~~  439 (691)
                      ++|-.+.-++   .    .+.+.|++..            .|..+++|++|+++.
T Consensus        92 ~~~~~~~d~~---~----~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~  139 (163)
T 3gkn_A           92 FAFPLVSDGD---E----ALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQ  139 (163)
T ss_dssp             CSSCEEECTT---C----HHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEE
T ss_pred             CCceEEECCc---H----HHHHHhCCccccccccccccCcceEEEEECCCCeEEE
Confidence            5555443222   2    3445688876            899999999999986

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.51  E-value=7.1e-07  Score=83.49  Aligned_cols=111  Identities=18%  Similarity=0.184  Sum_probs=76.8

Q ss_pred             eecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh
Q 044391          318 VVDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ  394 (691)
Q Consensus       318 l~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~  394 (691)
                      -+...+|+.+.+++++||.|+|+|-+.||++|  +++.|. +|++++   +.+++||.|++ |.   -+.+..+.|-+-+
T Consensus        44 ~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~---~~~~~vv~v~~-d~---~~~~~~~~~~~~~  116 (186)
T 1jfu_A           44 AFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLS---GPNFEVVAINI-DT---RDPEKPKTFLKEA  116 (186)
T ss_dssp             EEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHC---BTTEEEEEEEC-CC---SCTTHHHHHHHHT
T ss_pred             EeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhc---cCCcEEEEEEC-CC---CCHHHHHHHHHHc
Confidence            34456788899999999999999999999776  457799 999986   35799999986 31   1123445564433


Q ss_pred             c--CCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          395 A--MMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       395 ~--~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      .  ..|++.-+.     ....+.+.-..+..+.|+.+++|++|+++..
T Consensus       117 ~~~~~~~~~d~~-----~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~  159 (186)
T 1jfu_A          117 NLTRLGYFNDQK-----AKVFQDLKAIGRALGMPTSVLVDPQGCEIAT  159 (186)
T ss_dssp             TCCTTCCEECTT-----CHHHHHHHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred             CCCCCceEECCc-----chHHHHhccccccCCCCEEEEECCCCCEEEE
Confidence            2  356654222     2344443222233489999999999999864

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=98.50  E-value=1.6e-07  Score=85.61  Aligned_cols=108  Identities=13%  Similarity=0.015  Sum_probs=76.4

Q ss_pred             eecCCCCceeecceecCc-EEEEEEe-cCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH
Q 044391          318 VVDGSSRTRVNIEVLRRK-HVLLLIS-SLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ  392 (691)
Q Consensus       318 l~~g~~~~kV~Is~L~gK-~VlL~fS-al~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~  392 (691)
                      -+...+|+.+++++++|| .|+|+|- +.||++|.  ++.|. +|++++   +.+++||.|++ |     +.+..++|-+
T Consensus        19 ~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~---~~~~~vv~is~-d-----~~~~~~~~~~   89 (160)
T 1xvw_A           19 TLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFE---NDDSAALAISV-G-----PPPTHKIWAT   89 (160)
T ss_dssp             EEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTS---SSSEEEEEEES-C-----CHHHHHHHHH
T ss_pred             EeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHH---HCCcEEEEEeC-C-----CHHHHHHHHH
Confidence            344567788999999998 8999996 99998874  56788 888876   34699999986 4     2344455644


Q ss_pred             HhcCCCeeeecCCCCCchHHHHHHHHhhCcC----Cce--EEEEeCCCCceecc
Q 044391          393 LQAMMPWYTVQHPTIIEPAVVKYAKEVWKFS----KKA--ILVPVDPQGRILNQ  440 (691)
Q Consensus       393 ~~~~MPWyAVp~~d~i~~~~~r~ike~f~~~----~iP--~LVvL~pqGkv~~~  440 (691)
                      -+ ..+|..+.-.     .....+.+.|++.    ++|  ..+++|++|+++..
T Consensus        90 ~~-~~~~~~~~d~-----~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~  137 (160)
T 1xvw_A           90 QS-GFTFPLLSDF-----WPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFA  137 (160)
T ss_dssp             HH-TCCSCEEECT-----TTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEE
T ss_pred             hc-CCCceEEecC-----CcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEE
Confidence            33 2344333221     0012345668998    999  99999999999865

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=98.50  E-value=6.2e-07  Score=84.41  Aligned_cols=117  Identities=10%  Similarity=0.013  Sum_probs=77.0

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccC---CCCCChhhHHHHHH
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDR---SIAWDEGYRQKFEQ  392 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~---s~~W~D~d~~~F~~  392 (691)
                      +...+|+.+++++++||.|+|+|.+.||++|  +++.|. +|++++.+   +++||.|++ |.   ....+.++.++|-+
T Consensus        32 l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~---~v~vv~vs~-d~~~~~e~~~~~~~~~~~~  107 (183)
T 2obi_A           32 AKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAEC---GLRILAFPC-NQFGKQEPGSNEEIKEFAA  107 (183)
T ss_dssp             EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---TEEEEEEEC-CCSTTCCCSCHHHHHHHHH
T ss_pred             EEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcC---CeEEEEEEC-CCCCCCCCCCHHHHHHHHH
Confidence            3345678899999999999999999999887  557799 99999743   599999986 21   00123444555543


Q ss_pred             HhcCCCeeeec---CCCCCchHHHHHHHHhh---C-----cCCceEEEEeCCCCceecc
Q 044391          393 LQAMMPWYTVQ---HPTIIEPAVVKYAKEVW---K-----FSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       393 ~~~~MPWyAVp---~~d~i~~~~~r~ike~f---~-----~~~iP~LVvL~pqGkv~~~  440 (691)
                      -+ ..+|-.+.   .......+..+++++..   +     ++.+|+.+++|++|+++..
T Consensus       108 ~~-~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~  165 (183)
T 2obi_A          108 GY-NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKR  165 (183)
T ss_dssp             TT-TCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEE
T ss_pred             Hc-CCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEE
Confidence            22 33443332   11111123455555443   2     4557999999999999864

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=98.50  E-value=4.6e-07  Score=84.19  Aligned_cols=117  Identities=17%  Similarity=0.184  Sum_probs=71.8

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChh-hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCC--ChhhHHHHHHHhcC
Q 044391          321 GSSRTRVNIEVLRRKHVLLLISSLDLSDE-EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAW--DEGYRQKFEQLQAM  396 (691)
Q Consensus       321 g~~~~kV~Is~L~gK~VlL~fSal~~~~~-e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W--~D~d~~~F~~~~~~  396 (691)
                      ..+|+.|++++++||.|+|+|.+.||++| +++.|. +|++++.+   +++||.|++-+...+.  +.+..++|-.-...
T Consensus        19 d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~~l~~l~~~~~~~---~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~   95 (171)
T 3cmi_A           19 DKKGQPFPFDQLKGKVVLIVNVASKCGFTPQYKELEALYKRYKDE---GFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYG   95 (171)
T ss_dssp             BTTSCBCCGGGGTTCEEEEEEEESSSCCHHHHHHHHHHHHHHGGG---TEEEEEEEECSCC------------------C
T ss_pred             cCCCCEecHHHcCCCEEEEEEEecCCCcchhHHHHHHHHHHhccC---CeEEEEEECcccCCCCCCCHHHHHHHHHhccC
Confidence            34677899999999999999999999777 456799 99998743   6999999862100000  11222344311123


Q ss_pred             CCeeeecCCCC---CchHHHHHHH-HhhCcCCce------EEEEeCCCCceecc
Q 044391          397 MPWYTVQHPTI---IEPAVVKYAK-EVWKFSKKA------ILVPVDPQGRILNQ  440 (691)
Q Consensus       397 MPWyAVp~~d~---i~~~~~r~ik-e~f~~~~iP------~LVvL~pqGkv~~~  440 (691)
                      ++|..+.-++.   .-.+..+++. +.+++.+.|      +.+++|++|+++..
T Consensus        96 ~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~  149 (171)
T 3cmi_A           96 VTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYER  149 (171)
T ss_dssp             CCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEE
T ss_pred             CCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEE
Confidence            44433321110   0112344443 458999999      99999999999875

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=98.50  E-value=1.5e-07  Score=81.95  Aligned_cols=100  Identities=14%  Similarity=0.082  Sum_probs=71.2

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCC
Q 044391          321 GSSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMM  397 (691)
Q Consensus       321 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~M  397 (691)
                      ..+|..+.++.++||.|+|+|.+.||++|.  .+.|. ++++++     +++++.|++-+     +.+.-++|-.-. .+
T Consensus        12 ~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~v~~~~-----~~~~~~~~~~~~-~~   80 (136)
T 1zzo_A           12 TLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-----EVTFVGVAGLD-----QVPAMQEFVNKY-PV   80 (136)
T ss_dssp             BTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEECSS-----CHHHHHHHHHHT-TC
T ss_pred             cCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-----CeEEEEEeCCC-----CHHHHHHHHHHc-CC
Confidence            346778999999999999999999998874  46677 887764     69999998621     233334443322 23


Q ss_pred             -CeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          398 -PWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       398 -PWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                       +|-.+.-.+       ..+.+.|++.+.|+++++|++|+++
T Consensus        81 ~~~~~~~d~~-------~~~~~~~~i~~~P~~~~id~~g~i~  115 (136)
T 1zzo_A           81 KTFTQLADTD-------GSVWANFGVTQQPAYAFVDPHGNVD  115 (136)
T ss_dssp             TTSEEEECTT-------CHHHHHTTCCSSSEEEEECTTCCEE
T ss_pred             CceEEEEcCC-------cHHHHHcCCCCCceEEEECCCCCEE
Confidence             444333221       2355679999999999999999987

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=98.48  E-value=2e-07  Score=91.19  Aligned_cols=113  Identities=8%  Similarity=-0.034  Sum_probs=77.7

Q ss_pred             ceecCCCCceeecceecCcE-EEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCC--CCChhhHHHH
Q 044391          317 PVVDGSSRTRVNIEVLRRKH-VLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSI--AWDEGYRQKF  390 (691)
Q Consensus       317 ~l~~g~~~~kV~Is~L~gK~-VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~--~W~D~d~~~F  390 (691)
                      +-+...+|+.|.+++++||. |+|+|.+.||++|  +++.|. +|++++.   .+++||.|++-+...  .-+.+..++|
T Consensus        41 f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~---~~v~vv~Vs~d~~~~~~~d~~~~~~~~  117 (218)
T 3u5r_E           41 FVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAG---QGLAVVAINSNDAQAFPEETLERVGAE  117 (218)
T ss_dssp             CCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTT---TTEEEEEEECSCTTTCGGGSHHHHHHH
T ss_pred             cEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHh---CCcEEEEEECCcccccccCCHHHHHHH
Confidence            34445778899999999995 9999999999876  457799 9999874   459999998621000  0123334445


Q ss_pred             HHHhcCCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          391 EQLQAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       391 ~~~~~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      -+-+ .++|-.+.-++       ..+.+.|++.+.|.++++|++|+++..
T Consensus       118 ~~~~-~~~~~~l~D~~-------~~~~~~~~v~~~P~~~liD~~G~i~~~  159 (218)
T 3u5r_E          118 VKAY-GYGFPYLKDAS-------QSVAKAYGAACTPDFFLYDRERRLVYH  159 (218)
T ss_dssp             HHHH-TCCSCEEECTT-------CHHHHHHTCCEESEEEEECTTCBEEEE
T ss_pred             HHHh-CCCccEEECCc-------cHHHHHcCCCCCCeEEEECCCCcEEEe
Confidence            4332 23443332221       235566899999999999999999843

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=98.48  E-value=9.7e-07  Score=83.52  Aligned_cols=118  Identities=10%  Similarity=0.040  Sum_probs=76.9

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccC---CCCCChhhHHHHH-
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDR---SIAWDEGYRQKFE-  391 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~---s~~W~D~d~~~F~-  391 (691)
                      +...+|+.+++++++||.|+|+|.+.||++|  +++.|. +|++++++   +++||.|++ |.   ..+++.++-++|- 
T Consensus        34 l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~---~v~vv~is~-d~~~~~~~~~~~~~~~~~~  109 (185)
T 2gs3_A           34 AKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAEC---GLRILAFPC-NQFGKQEPGSNEEIKEFAA  109 (185)
T ss_dssp             EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---TEEEEEEEC-CTTTTCCCSCHHHHHHHHH
T ss_pred             eEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcC---CeEEEEEEC-cccCCCCCCCHHHHHHHHH
Confidence            3446678899999999999999999999887  567899 99999743   599999986 21   1123344445564 


Q ss_pred             HHhcCCCeee-ecCCCCCchHHHHHHHHhh---C-----cCCceEEEEeCCCCceecc
Q 044391          392 QLQAMMPWYT-VQHPTIIEPAVVKYAKEVW---K-----FSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       392 ~~~~~MPWyA-Vp~~d~i~~~~~r~ike~f---~-----~~~iP~LVvL~pqGkv~~~  440 (691)
                      ++.-..|.++ +........+..+++++..   +     ++..|..+++|++|+++..
T Consensus       110 ~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~  167 (185)
T 2gs3_A          110 GYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKR  167 (185)
T ss_dssp             HTTCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEE
T ss_pred             HcCCCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEe
Confidence            3322333332 1111111123445554433   3     3346999999999999865

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=98.48  E-value=3.2e-07  Score=84.00  Aligned_cols=112  Identities=16%  Similarity=0.293  Sum_probs=78.9

Q ss_pred             cCCCCceeecceecCcEEEEEEecCCCCh-h--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCC-ChhhHHHHHHHh
Q 044391          320 DGSSRTRVNIEVLRRKHVLLLISSLDLSD-E--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAW-DEGYRQKFEQLQ  394 (691)
Q Consensus       320 ~g~~~~kV~Is~L~gK~VlL~fSal~~~~-~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W-~D~d~~~F~~~~  394 (691)
                      ...+| .+.+++++||.|+|+|.+.||++ |  +++.|. +|++++.+...+++||.|++ |.  .. +.+..+.|-+-+
T Consensus        22 ~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~-d~--~~d~~~~~~~~~~~~   97 (172)
T 2k6v_A           22 EGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSV-DP--ERDPPEVADRYAKAF   97 (172)
T ss_dssp             ECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEES-CT--TTCCHHHHHHHHHHH
T ss_pred             EcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEE-CC--CCCCHHHHHHHHHHh
Confidence            34566 89999999999999999999987 7  457788 99888643114799999996 32  11 123345565543


Q ss_pred             cCCCeeeecCCCCCchHHHHHHHHhhC---------------cCCceEEEEeCCCCceeccc
Q 044391          395 AMMPWYTVQHPTIIEPAVVKYAKEVWK---------------FSKKAILVPVDPQGRILNQN  441 (691)
Q Consensus       395 ~~MPWyAVp~~d~i~~~~~r~ike~f~---------------~~~iP~LVvL~pqGkv~~~N  441 (691)
                       ..+|..+.-+    ....+.+.+.|+               +.+.|+++++| +|+++...
T Consensus        98 -~~~~~~l~d~----~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~  153 (172)
T 2k6v_A           98 -HPSFLGLSGS----PEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLY  153 (172)
T ss_dssp             -CTTEEEECCC----HHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEE
T ss_pred             -CCCcEEEeCC----HHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEE
Confidence             3677766543    234455555565               46889999999 99998653

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=98.46  E-value=1.5e-06  Score=82.01  Aligned_cols=116  Identities=12%  Similarity=0.109  Sum_probs=81.6

Q ss_pred             ceecCCCCceeecceecCcEEEEEEecCCCC-hh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCCh--hhHHHH
Q 044391          317 PVVDGSSRTRVNIEVLRRKHVLLLISSLDLS-DE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDE--GYRQKF  390 (691)
Q Consensus       317 ~l~~g~~~~kV~Is~L~gK~VlL~fSal~~~-~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D--~d~~~F  390 (691)
                      +-+-..+|+.|.+++|+||.|+|+|-..||| .|  ++.-|. +|+.+++. +.++.+|+|++ |+   ..|  +..++|
T Consensus        15 F~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~-~~~v~~v~isv-Dp---~~Dtp~~l~~y   89 (170)
T 4hde_A           15 FQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEE-KLDVQFVSFSV-DP---DLDKPENLKAF   89 (170)
T ss_dssp             CEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHT-TCCCEEEEEES-CT---TTCCHHHHHHH
T ss_pred             cEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcc-cccceeEeeec-Cc---ccccHHHHHHH
Confidence            4455667889999999999999999999995 35  456688 99999876 77899999986 52   222  233566


Q ss_pred             HHHhc--CCCeeeecCCCCCchHHHHHHHHhhCc----------CCceEEEEeCCCCceec
Q 044391          391 EQLQA--MMPWYTVQHPTIIEPAVVKYAKEVWKF----------SKKAILVPVDPQGRILN  439 (691)
Q Consensus       391 ~~~~~--~MPWyAVp~~d~i~~~~~r~ike~f~~----------~~iP~LVvL~pqGkv~~  439 (691)
                      -+.+.  ...|..+--++  .....+..+..|..          ..-|.++++||+|+++.
T Consensus        90 ~~~~~~~~~~~~~ltg~~--~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~  148 (170)
T 4hde_A           90 IQKFTEDTSNWNLLTGYS--LEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMK  148 (170)
T ss_dssp             HTTTCSCCTTEEEEBCSC--HHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEE
T ss_pred             HHHcCCCCCCceecCccc--HHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEE
Confidence            55442  24687766544  23445555555543          33478999999999974

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.46  E-value=6.4e-07  Score=84.56  Aligned_cols=99  Identities=13%  Similarity=0.116  Sum_probs=75.9

Q ss_pred             eeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc---CCC
Q 044391          326 RVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA---MMP  398 (691)
Q Consensus       326 kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~---~MP  398 (691)
                      .+.+++++||.|+|+|- +.||++|  +++.|. +|++++.+   +++||.|++ |     +.+..+.|-..+.   .++
T Consensus        23 ~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~---~v~vv~vs~-d-----~~~~~~~~~~~~~~~~~~~   93 (187)
T 1we0_A           23 EVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL---GVEVYSVST-D-----THFVHKAWHENSPAVGSIE   93 (187)
T ss_dssp             EEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT---TEEEEEEES-S-----CHHHHHHHHHSCHHHHTCC
T ss_pred             EecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHc---CCEEEEEEC-C-----CHHHHHHHHHHhccccCCC
Confidence            89999999999999999 9999776  567899 99999743   699999986 3     1344556655442   567


Q ss_pred             eeeecCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceecc
Q 044391          399 WYTVQHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILNQ  440 (691)
Q Consensus       399 WyAVp~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~  440 (691)
                      |..+.-++       ..+.+.|++.      ..|+.+++|++|+++..
T Consensus        94 ~~~~~d~~-------~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~  134 (187)
T 1we0_A           94 YIMIGDPS-------QTISRQFDVLNEETGLADRGTFIIDPDGVIQAI  134 (187)
T ss_dssp             SEEEECTT-------CHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             ceEEECCc-------hHHHHHhCCCcCCCCceeeEEEEECCCCeEEEE
Confidence            66554322       2344568998      89999999999999875

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=98.45  E-value=4.8e-07  Score=84.95  Aligned_cols=109  Identities=8%  Similarity=-0.007  Sum_probs=74.4

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCC---CChhhHHHHHH
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIA---WDEGYRQKFEQ  392 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~---W~D~d~~~F~~  392 (691)
                      +...+|+.+.+++++||.|+|+|.+.||++|  +++.|. +|++++   +. ++||.|++ |....   =+.+.-++|-+
T Consensus        18 l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~---~~-~~~v~v~~-d~~~~~~~d~~~~~~~~~~   92 (188)
T 2cvb_A           18 LPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYR---GK-VAFVGINA-NDYEKYPEDAPEKMAAFAE   92 (188)
T ss_dssp             EECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTT---TT-EEEEEEEC-CCTTTCGGGSHHHHHHHHH
T ss_pred             eecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhh---cC-eEEEEEEc-CccccccccCHHHHHHHHH
Confidence            3445677899999999999999999999876  457788 999876   33 99999986 21000   01223344433


Q ss_pred             HhcCCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          393 LQAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       393 ~~~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      -+ .++|-.+--++       ..+.+.|++.+.|+++++|++|+++..
T Consensus        93 ~~-~~~~~~~~d~~-------~~~~~~~~v~~~P~~~lid~~G~i~~~  132 (188)
T 2cvb_A           93 EH-GIFFPYLLDET-------QEVAKAYRALRTPEVFLFDERRLLRYH  132 (188)
T ss_dssp             HH-TCCSCEEECSS-------SHHHHHTTCCEESEEEEECTTCBEEEE
T ss_pred             Hh-CCCceEEECCc-------chHHHHcCCCCCCeEEEECCCCcEEEE
Confidence            22 23332222111       234567899999999999999999866

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=98.44  E-value=1.8e-06  Score=81.22  Aligned_cols=117  Identities=15%  Similarity=0.177  Sum_probs=78.5

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCC--CCCChhhHHHHHH-
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRS--IAWDEGYRQKFEQ-  392 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s--~~W~D~d~~~F~~-  392 (691)
                      +...+|+.|++++++||.|+|+|-+.||++|  +++.|. +|++++.   .+++||-|++-+-.  .+=+.++-++|-. 
T Consensus        23 l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~---~~~~vi~is~d~~~~~~~d~~~~~~~~~~~   99 (180)
T 3kij_A           23 VKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGP---SHFSVLAFPCNQFGESEPRPSKEVESFARK   99 (180)
T ss_dssp             EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTT---TSEEEEEEECCCSTTCCCSCHHHHHHHHHH
T ss_pred             EecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhcc---CCeEEEEEECCccccCCCCCHHHHHHHHHH
Confidence            3445677899999999999999999999887  567899 9999873   46999999862100  0113344456644 


Q ss_pred             -HhcCCCeeeec-CCCCCchHHHHHHHHhhCcCCceE----EEEeCCCCceecc
Q 044391          393 -LQAMMPWYTVQ-HPTIIEPAVVKYAKEVWKFSKKAI----LVPVDPQGRILNQ  440 (691)
Q Consensus       393 -~~~~MPWyAVp-~~d~i~~~~~r~ike~f~~~~iP~----LVvL~pqGkv~~~  440 (691)
                       +.-..|.++-. ..+.......+++....  .+.|.    .+++|++|+++..
T Consensus       100 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~p~~~~~~~lid~~G~i~~~  151 (180)
T 3kij_A          100 NYGVTFPIFHKIKILGSEGEPAFRFLVDSS--KKEPRWNFWKYLVNPEGQVVKF  151 (180)
T ss_dssp             HHCCCSCBBCCCCCSSTTCCHHHHHHHHHH--TCCCSSTTCEEEECTTSCEEEE
T ss_pred             hcCCCCceeeeeeccCccccHHHHHHHhcC--CCCccccceEEEECCCCCEEEE
Confidence             33445555411 11111223566666553  47888    9999999999854

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.41  E-value=3e-06  Score=76.02  Aligned_cols=108  Identities=10%  Similarity=0.027  Sum_probs=77.0

Q ss_pred             eecCCCCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh
Q 044391          318 VVDGSSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ  394 (691)
Q Consensus       318 l~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~  394 (691)
                      -+...+|..+.+++++||.|+|+|.+.||++|.  .+.|. ++++++.   .++.||.|++ |.   -+.+..++|-.- 
T Consensus        12 ~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~v~~-~~---~~~~~~~~~~~~-   83 (153)
T 2l5o_A           12 SLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKN---KNFQVLAVAQ-PI---DPIESVRQYVKD-   83 (153)
T ss_dssp             EEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGG---TTEEEEEEEC-TT---SCHHHHHHHHHH-
T ss_pred             EeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhcc---CCeEEEEEec-CC---CCHHHHHHHHHH-
Confidence            344456778999999999999999999998874  46788 8888863   4699999985 21   123344555432 


Q ss_pred             cCCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          395 AMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       395 ~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      ..+||-.+.-++       ..+.+.|++.+.|+++++|++|+++..
T Consensus        84 ~~~~~~~~~d~~-------~~~~~~~~i~~~P~~~lid~~G~i~~~  122 (153)
T 2l5o_A           84 YGLPFTVMYDAD-------KAVGQAFGTQVYPTSVLIGKKGEILKT  122 (153)
T ss_dssp             TTCCSEEEECSS-------CHHHHHHTCCSSSEEEEECSSSCCCEE
T ss_pred             cCCCceEEcCch-------HHHHHHcCCCccCeEEEECCCCcEEEE
Confidence            355654333222       235567899999999999999998743

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=98.40  E-value=7.1e-07  Score=83.43  Aligned_cols=109  Identities=14%  Similarity=0.043  Sum_probs=74.5

Q ss_pred             CCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccC---CCCeeEEEEecccCCCCCChhhHHHHHHHhcC
Q 044391          323 SRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKARE---EFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAM  396 (691)
Q Consensus       323 ~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~---~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~  396 (691)
                      +|+.+.++.++||.|+|+|-+.||++|  +.+.|. +|++++.+.   ..+++||.|++ |.   -+.+.-++|-.- ..
T Consensus        48 ~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~-d~---~~~~~~~~~~~~-~~  122 (183)
T 3lwa_A           48 EGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINV-RD---YSRDIAQDFVTD-NG  122 (183)
T ss_dssp             TTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEEC-SC---CCHHHHHHHHHH-TT
T ss_pred             CCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEEC-CC---CCHHHHHHHHHH-cC
Confidence            678899999999999999999999877  457799 999987541   23448999886 21   012333445332 24


Q ss_pred             CCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          397 MPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       397 MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      +||..+.-++   ....+.+. .|++.+.|..+++|++|+++..
T Consensus       123 ~~~~~~~d~~---~~~~~~~~-~~~v~~~P~~~lid~~G~i~~~  162 (183)
T 3lwa_A          123 LDYPSIYDPP---FMTAASLG-GVPASVIPTTIVLDKQHRPAAV  162 (183)
T ss_dssp             CCSCEEECTT---CGGGGGTT-TCCTTCCSEEEEECTTSCEEEE
T ss_pred             CCccEEECCc---chHHHHhc-cCCCCCCCeEEEECCCCcEEEE
Confidence            5666554433   12222221 2468999999999999999754

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=98.40  E-value=1.7e-06  Score=76.46  Aligned_cols=106  Identities=8%  Similarity=0.021  Sum_probs=71.7

Q ss_pred             CCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCe
Q 044391          323 SRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPW  399 (691)
Q Consensus       323 ~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPW  399 (691)
                      +|..+.++.++||.|+|+|.+.||++|.  .+.|. +|++++.   . +.+|.|++-+....=+.+.-++|-.-. .++|
T Consensus        18 ~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~---~-~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~   92 (148)
T 2b5x_A           18 NGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD---Q-LNVVAVHMPRSEDDLDPGKIKETAAEH-DITQ   92 (148)
T ss_dssp             SCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT---T-SEEEEEECCCSTTTSSHHHHHHHHHHT-TCCS
T ss_pred             cCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcC---C-cEEEEEEcCCCccccCHHHHHHHHHHc-CCCc
Confidence            5667899999999999999999998774  46788 8888753   2 999999862110000122334443322 3444


Q ss_pred             eeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          400 YTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       400 yAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      ..+.-.+       ..+.+.|++.+.|+++++|++|+++..
T Consensus        93 ~~~~d~~-------~~~~~~~~v~~~P~~~lid~~G~i~~~  126 (148)
T 2b5x_A           93 PIFVDSD-------HALTDAFENEYVPAYYVFDKTGQLRHF  126 (148)
T ss_dssp             CEEECSS-------CHHHHHTCCCCSSEEEEECTTCBEEEE
T ss_pred             ceEECCc-------hhHHHHhCCCCCCEEEEECCCCcEEEE
Confidence            4332221       235566999999999999999998864

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.39  E-value=3.1e-07  Score=87.73  Aligned_cols=108  Identities=10%  Similarity=0.074  Sum_probs=76.6

Q ss_pred             CCc---eeeccee-cCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH-
Q 044391          323 SRT---RVNIEVL-RRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL-  393 (691)
Q Consensus       323 ~~~---kV~Is~L-~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~-  393 (691)
                      +|+   .|+++++ +||.|+|+|. +.||++|  +++.|. +|++++.   .+++||.|++ |     +.+..++|-+- 
T Consensus        18 ~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~---~~v~vv~Is~-d-----~~~~~~~~~~~~   88 (198)
T 1zof_A           18 NNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHE---KGFNVIGVSI-D-----SEQVHFAWKNTP   88 (198)
T ss_dssp             TSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHH---TTEEEEEEES-S-----CHHHHHHHHTSC
T ss_pred             CCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHH---cCCEEEEEEC-C-----CHHHHHHHHHhh
Confidence            455   8999999 9999999999 9999776  567899 9999874   3699999986 3     13344445432 


Q ss_pred             hcCCCeeeecCCCCCchHHHHHHHHhhCcC-----CceEEEEeCCCCceeccc
Q 044391          394 QAMMPWYTVQHPTIIEPAVVKYAKEVWKFS-----KKAILVPVDPQGRILNQN  441 (691)
Q Consensus       394 ~~~MPWyAVp~~d~i~~~~~r~ike~f~~~-----~iP~LVvL~pqGkv~~~N  441 (691)
                      .....|+.++|+-..|.  .+.+.+.|++.     ..|..+++|++|+++...
T Consensus        89 ~~~~~~~~~~~~~~~d~--~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~  139 (198)
T 1zof_A           89 VEKGGIGQVSFPMVADI--TKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAV  139 (198)
T ss_dssp             GGGTCCCCCSSCEEECT--TSHHHHHTTCEETTTEECEEEEEEETTTEEEEEE
T ss_pred             hhcccccCceeEEEECC--chHHHHHhCCcccCCcccceEEEECCCCEEEEEE
Confidence            22223444444422222  23455679998     999999999999998753

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.38  E-value=9.5e-07  Score=83.90  Aligned_cols=103  Identities=15%  Similarity=0.099  Sum_probs=76.2

Q ss_pred             CC--ceeeccee-cCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391          323 SR--TRVNIEVL-RRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA  395 (691)
Q Consensus       323 ~~--~kV~Is~L-~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~  395 (691)
                      +|  +.|+++++ +||.|+|+|- +.||++|  +++.|. +|++++.   .+++||.|++ |     +.+..++|-.-+.
T Consensus        17 ~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~---~~v~vv~Is~-d-----~~~~~~~~~~~~~   87 (192)
T 2h01_A           17 DNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKE---RNVELLGCSV-D-----SKFTHLAWKKTPL   87 (192)
T ss_dssp             TSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHH---TTEEEEEEES-S-----CHHHHHHHHTSCG
T ss_pred             CCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEEe-C-----CHHHHHHHHHhHH
Confidence            45  78999999 9999999999 9999776  567799 9999874   4699999986 3     2344455554332


Q ss_pred             ------CCCeeeecCCCCCchHHHHHHHHhhCcC-----CceEEEEeCCCCceeccc
Q 044391          396 ------MMPWYTVQHPTIIEPAVVKYAKEVWKFS-----KKAILVPVDPQGRILNQN  441 (691)
Q Consensus       396 ------~MPWyAVp~~d~i~~~~~r~ike~f~~~-----~iP~LVvL~pqGkv~~~N  441 (691)
                            .++|..+.-++       +.+.+.|++.     ..|..+++|++|+++...
T Consensus        88 ~~~~~~~~~~~~l~D~~-------~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~  137 (192)
T 2h01_A           88 SQGGIGNIKHTLISDIS-------KSIARSYDVLFNESVALRAFVLIDKQGVVQHLL  137 (192)
T ss_dssp             GGTCCCSCSSEEEECTT-------SHHHHHTTCEETTTEECCEEEEECTTSBEEEEE
T ss_pred             hhCCccCCCcCeEECCc-------HHHHHHhCCcCcCCceeeEEEEEcCCCEEEEEE
Confidence                  45554433221       2355668998     899999999999998753

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=98.38  E-value=1.3e-06  Score=82.80  Aligned_cols=103  Identities=14%  Similarity=0.136  Sum_probs=73.9

Q ss_pred             CCCCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcC
Q 044391          321 GSSRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAM  396 (691)
Q Consensus       321 g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~  396 (691)
                      ..+|+.|.+++++||.|+|+|- +.||++|  +++.|. +|++++.   .+++||.|+. |     +.++.++|-+-+ .
T Consensus        38 ~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~---~~~~vv~Vs~-D-----~~~~~~~~~~~~-~  107 (179)
T 3ixr_A           38 LSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQ---INATVLGVSR-D-----SVKSHDSFCAKQ-G  107 (179)
T ss_dssp             EGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHT---TTEEEEEEES-C-----CHHHHHHHHHHH-T
T ss_pred             CCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEcC-C-----CHHHHHHHHHHc-C
Confidence            3467789999999998888876 9999766  567799 9999984   4699999986 4     345566775533 4


Q ss_pred             CCeeeecCCCCCchHHHHHHHHhhCcCC------------ceEEEEeCCCCceecc
Q 044391          397 MPWYTVQHPTIIEPAVVKYAKEVWKFSK------------KAILVPVDPQGRILNQ  440 (691)
Q Consensus       397 MPWyAVp~~d~i~~~~~r~ike~f~~~~------------iP~LVvL~pqGkv~~~  440 (691)
                      ++|-.+.-++   .    .+.+.|++..            .|..+++||+|+++..
T Consensus       108 ~~f~~l~D~~---~----~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~  156 (179)
T 3ixr_A          108 FTFPLVSDSD---A----ILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEA  156 (179)
T ss_dssp             CCSCEEECTT---C----HHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEE
T ss_pred             CceEEEECCc---h----HHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEE
Confidence            4544433222   2    3445577743            6899999999999864

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=98.38  E-value=4.4e-07  Score=85.38  Aligned_cols=97  Identities=15%  Similarity=0.017  Sum_probs=68.2

Q ss_pred             ceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeee
Q 044391          325 TRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYT  401 (691)
Q Consensus       325 ~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyA  401 (691)
                      +.+.++.++||.|+|+|-+.||++|.  ++.|. +|++       +++||.|++-|     +.+.-++|-+- ...||..
T Consensus        49 ~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-------~v~vv~vs~~d-----~~~~~~~~~~~-~~~~~~~  115 (176)
T 3kh7_A           49 RRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ-------GVVIYGINYKD-----DNAAAIKWLNE-LHNPYLL  115 (176)
T ss_dssp             SEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-------TCEEEEEEESC-----CHHHHHHHHHH-TTCCCSE
T ss_pred             ceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC-------CCEEEEEeCCC-----CHHHHHHHHHH-cCCCCce
Confidence            67999999999999999999998874  46677 7765       49999998722     23333444332 2344443


Q ss_pred             ecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          402 VQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       402 Vp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      +-...      ...+.+.|++.+.|..+++|++|+++..
T Consensus       116 ~~~d~------~~~~~~~~~v~~~P~~~lid~~G~i~~~  148 (176)
T 3kh7_A          116 SISDA------DGTLGLDLGVYGAPETYLIDKQGIIRHK  148 (176)
T ss_dssp             EEEET------TCHHHHHHTCCSSCEEEEECTTCBEEEE
T ss_pred             EEECC------cchHHHHcCCCCCCeEEEECCCCeEEEE
Confidence            22211      1244566899999999999999999853

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.37  E-value=1.2e-06  Score=86.13  Aligned_cols=104  Identities=13%  Similarity=0.093  Sum_probs=76.7

Q ss_pred             CCCCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh-c
Q 044391          321 GSSRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ-A  395 (691)
Q Consensus       321 g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~-~  395 (691)
                      +.++..|.+++++||.|+|+|- +.||++|  +++.|. +|++++.   .+++||.|++ |     +.++.++|-+-. .
T Consensus        43 ~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~---~~v~vv~Is~-D-----~~~~~~~~~~~~~~  113 (220)
T 1zye_A           43 SGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHD---VNCEVVAVSV-D-----SHFSHLAWINTPRK  113 (220)
T ss_dssp             SSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHH---TTEEEEEEES-S-----CHHHHHHHHTSCGG
T ss_pred             CCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEEC-C-----CHHHHHHHHHHHHH
Confidence            4567889999999999999999 9999776  567799 9999874   3699999986 3     233445554322 1


Q ss_pred             -----CCCeeeecCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceecc
Q 044391          396 -----MMPWYTVQHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILNQ  440 (691)
Q Consensus       396 -----~MPWyAVp~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~  440 (691)
                           .++|..+.-+       .+.+.+.|++.      ..|.++++|++|+++..
T Consensus       114 ~~g~~~~~fp~l~D~-------~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~  162 (220)
T 1zye_A          114 NGGLGHMNIALLSDL-------TKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHL  162 (220)
T ss_dssp             GTCCCSCSSEEEECT-------TSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             hCCCcCCceEEEECC-------cHHHHHHhCCeecCCCcccceEEEECCCCEEEEE
Confidence                 4455433322       13455668998      99999999999999865

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=98.37  E-value=1.6e-06  Score=86.91  Aligned_cols=102  Identities=13%  Similarity=0.057  Sum_probs=75.5

Q ss_pred             CCceeecceecCcEEEEEEec-CCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh----
Q 044391          323 SRTRVNIEVLRRKHVLLLISS-LDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ----  394 (691)
Q Consensus       323 ~~~kV~Is~L~gK~VlL~fSa-l~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~----  394 (691)
                      +++.|++++++||.|+|+|-+ .||++|  +++-|. +|+++++   .+++||.||. |     +.+..+.|-+-.    
T Consensus        66 ~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~---~gv~vv~Is~-D-----~~~~~~~~~~~~~~~~  136 (240)
T 3qpm_A           66 EFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRA---INTEVVACSV-D-----SQFTHLAWIITPRKQG  136 (240)
T ss_dssp             EEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHT---TTEEEEEEES-S-----CHHHHHHHHHSCGGGT
T ss_pred             CCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEEC-C-----CHHHHHHHHHHHHhhc
Confidence            355899999999999999988 889776  567799 9999984   4699999995 4     244555665432    


Q ss_pred             --cCCCeeeecCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceecc
Q 044391          395 --AMMPWYTVQHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILNQ  440 (691)
Q Consensus       395 --~~MPWyAVp~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~  440 (691)
                        ..+||..+.-++       +.+.+.|++.      ..|..+++||+|+++..
T Consensus       137 ~~~~~~fp~l~D~~-------~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~  183 (240)
T 3qpm_A          137 GLGPMKIPLLSDLT-------HQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQI  183 (240)
T ss_dssp             CCCSCSSCEEECTT-------SHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             CCCCCceeEEeCch-------HHHHHHhCCccccCCCccceEEEEcCCCeEEEE
Confidence              145655443332       2455568886      58999999999999865

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=98.35  E-value=1.6e-06  Score=78.04  Aligned_cols=106  Identities=10%  Similarity=0.022  Sum_probs=76.8

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA  395 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~  395 (691)
                      +...+|+.+.+++++ |.|+|+|.+.||++|  +.+.|. +|+++      ++++|.|++ |     .+.+.+....+..
T Consensus        16 l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~------~v~~v~v~~-d-----~~~~~~~~~~~~~   82 (154)
T 3ia1_A           16 LLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET------GVPFYVISR-E-----PRDTREVVLEYMK   82 (154)
T ss_dssp             EECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH------CCCEEEEEC-C-----TTCCHHHHHHHHT
T ss_pred             EECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc------CCeEEEEeC-C-----CcccHHHHHHHHH
Confidence            344567789999999 999999999999877  446788 88887      489999986 2     1334445555554


Q ss_pred             CC--CeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceeccc
Q 044391          396 MM--PWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQN  441 (691)
Q Consensus       396 ~M--PWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~N  441 (691)
                      ..  +|..+..+.    .....+.+.|++.+.|+++++|++|+++...
T Consensus        83 ~~~~~~~~~~d~~----~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  126 (154)
T 3ia1_A           83 TYPRFIPLLASDR----DRPHEVAARFKVLGQPWTFVVDREGKVVALF  126 (154)
T ss_dssp             TCTTEEECBCCSS----CCHHHHHTTSSBCSSCEEEEECTTSEEEEEE
T ss_pred             HcCCCcccccccc----cchHHHHHHhCCCcccEEEEECCCCCEEEEE
Confidence            44  443333211    1345677889999999999999999988643

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.34  E-value=2.1e-06  Score=82.52  Aligned_cols=100  Identities=14%  Similarity=0.115  Sum_probs=74.6

Q ss_pred             ceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc-----
Q 044391          325 TRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA-----  395 (691)
Q Consensus       325 ~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~-----  395 (691)
                      +.+.+++++||.|+|+|- +.||++|  +++.|. +|+++++   .+++||.|++ |     +.+..++|-+-+.     
T Consensus        27 ~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~---~~v~vi~Is~-D-----~~~~~~~~~~~~~~~~~~   97 (202)
T 1uul_A           27 KKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSD---IGCEVLACSM-D-----SEYSHLAWTSIERKRGGL   97 (202)
T ss_dssp             EEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHT---TTEEEEEEES-S-----CHHHHHHHHHSCGGGTCC
T ss_pred             cEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEeC-C-----CHHHHHHHHHHHHhhCCC
Confidence            689999999999999999 9999887  467799 9999873   4699999986 4     2344455554331     


Q ss_pred             -CCCeeeecCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceecc
Q 044391          396 -MMPWYTVQHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILNQ  440 (691)
Q Consensus       396 -~MPWyAVp~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~  440 (691)
                       .++|..+.-++       +.+.+.|++.      ..|..+++|++|+++..
T Consensus        98 ~~~~~p~l~D~~-------~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~  142 (202)
T 1uul_A           98 GQMNIPILADKT-------KCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQI  142 (202)
T ss_dssp             CSCSSCEEECTT-------CHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             CCCceeEEECCc-------hHHHHHcCCccCCCCceeeEEEEECCCCEEEEE
Confidence             44554433221       2445568998      99999999999999875

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=98.34  E-value=1.5e-06  Score=86.11  Aligned_cols=103  Identities=13%  Similarity=0.121  Sum_probs=75.6

Q ss_pred             CC--ceeeccee-cCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391          323 SR--TRVNIEVL-RRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA  395 (691)
Q Consensus       323 ~~--~kV~Is~L-~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~  395 (691)
                      +|  +.|+++++ +||.|+|+|- +.||++|  +++.|. +|+++++   .+++||.|++ |     +.+..+.|-+-+.
T Consensus        42 ~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~---~~v~vv~Is~-D-----~~~~~~~~~~~~~  112 (221)
T 2c0d_A           42 NNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFEN---KNVELLGISV-D-----SVYSHLAWKNMPI  112 (221)
T ss_dssp             TSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHH---TTEEEEEEES-S-----CHHHHHHHHHSCG
T ss_pred             CCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEeC-C-----CHHHHHHHHHHhh
Confidence            56  78999999 9999999999 9999765  567799 9999974   4699999996 4     2445566755442


Q ss_pred             ------CCCeeeecCCCCCchHHHHHHHHhhCc-----CCceEEEEeCCCCceeccc
Q 044391          396 ------MMPWYTVQHPTIIEPAVVKYAKEVWKF-----SKKAILVPVDPQGRILNQN  441 (691)
Q Consensus       396 ------~MPWyAVp~~d~i~~~~~r~ike~f~~-----~~iP~LVvL~pqGkv~~~N  441 (691)
                            .++|-.+.-++       ..+.+.|++     ...|..++||++|+++...
T Consensus       113 ~~~g~~~~~fp~l~D~~-------~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~  162 (221)
T 2c0d_A          113 EKGGIGNVEFTLVSDIN-------KDISKNYNVLYDNSFALRGLFIIDKNGCVRHQT  162 (221)
T ss_dssp             GGTCCCSCSSEEEECTT-------SHHHHHTTCEETTTEECEEEEEECTTSBEEEEE
T ss_pred             hhcCccCCceEEEECCc-------hHHHHHcCCcccCCCccceEEEECCCCeEEEEE
Confidence                  44554332221       234456888     3689999999999998653

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.34  E-value=1.5e-06  Score=85.14  Aligned_cols=102  Identities=15%  Similarity=0.104  Sum_probs=77.0

Q ss_pred             CC--ceeeccee-cCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391          323 SR--TRVNIEVL-RRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA  395 (691)
Q Consensus       323 ~~--~kV~Is~L-~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~  395 (691)
                      +|  +.|.++++ +||.|+|+|- +.||++|  +++.|. +|+++++   .+++||.|++ |     +.+..++|-+-..
T Consensus        38 ~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~---~~v~vv~Is~-D-----~~~~~~~~~~~~~  108 (213)
T 2i81_A           38 DNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHE---RNVELLGCSV-D-----SKYTHLAWKKTPL  108 (213)
T ss_dssp             TSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHH---TTEEEEEEES-S-----CHHHHHHHHSSCG
T ss_pred             CCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeC-C-----CHHHHHHHHHHHH
Confidence            56  78999999 9999999999 9999877  557799 9999874   4699999986 3     2344455654332


Q ss_pred             ------CCCeeeecCCCCCchHHHHHHHHhhCcC-----CceEEEEeCCCCceecc
Q 044391          396 ------MMPWYTVQHPTIIEPAVVKYAKEVWKFS-----KKAILVPVDPQGRILNQ  440 (691)
Q Consensus       396 ------~MPWyAVp~~d~i~~~~~r~ike~f~~~-----~iP~LVvL~pqGkv~~~  440 (691)
                            .+||..+--++       +.+.+.|++.     ..|..+++|++|+++..
T Consensus       109 ~~~g~~~~~fp~l~D~~-------~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~  157 (213)
T 2i81_A          109 AKGGIGNIKHTLLSDIT-------KSISKDYNVLFDDSVSLRAFVLIDMNGIVQHL  157 (213)
T ss_dssp             GGTCCCSCSSEEEECTT-------SHHHHHTTCEETTTEECEEEEEECTTSBEEEE
T ss_pred             hhCCccCCCceEEECCc-------hHHHHHhCCccccCCcccEEEEECCCCEEEEE
Confidence                  56765543322       3455668998     89999999999999865

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.31  E-value=1.8e-06  Score=77.55  Aligned_cols=98  Identities=14%  Similarity=0.091  Sum_probs=69.4

Q ss_pred             ceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeee
Q 044391          325 TRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYT  401 (691)
Q Consensus       325 ~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyA  401 (691)
                      +.+.+++++||.++|+|.+.||++|.  .+.|. +|++      .++++|.|++-+     +.+..++|-.-+ .++|..
T Consensus        33 ~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~------~~v~~v~v~~~~-----~~~~~~~~~~~~-~~~~~~  100 (156)
T 1kng_A           33 PGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD------KRFQLVGINYKD-----AADNARRFLGRY-GNPFGR  100 (156)
T ss_dssp             CCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC------TTSEEEEEEESC-----CHHHHHHHHHHH-CCCCSE
T ss_pred             ceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc------CCeEEEEEECCC-----CHHHHHHHHHHc-CCCCce
Confidence            67999999999999999999998874  35566 5543      469999998622     233445554332 456653


Q ss_pred             ecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          402 VQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       402 Vp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      +-...      ...+.+.|++.+.|+.+++|++|+++..
T Consensus       101 ~~~d~------~~~~~~~~~v~~~P~~~~id~~G~i~~~  133 (156)
T 1kng_A          101 VGVDA------NGRASIEWGVYGVPETFVVGREGTIVYK  133 (156)
T ss_dssp             EEEET------TSHHHHHTTCCSSCEEEEECTTSBEEEE
T ss_pred             eeeCc------hhHHHHhcCcCccCeEEEEcCCCCEEEE
Confidence            33321      1245567999999999999999998763

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=98.30  E-value=4.4e-06  Score=80.72  Aligned_cols=149  Identities=11%  Similarity=0.107  Sum_probs=94.2

Q ss_pred             ecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391          332 LRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII  408 (691)
Q Consensus       332 L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i  408 (691)
                      .+||.|+++|.+.||++|.  .+.|. ++++++.+ +.++.++-|-.        |.+                      
T Consensus        30 ~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~~~~vd~--------~~~----------------------   78 (241)
T 3idv_A           30 ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDK-DPPIPVAKIDA--------TSA----------------------   78 (241)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTS-SSCCCEEEEET--------TTC----------------------
T ss_pred             hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhc-CCceEEEEEec--------cCC----------------------
Confidence            3589999999999998874  47788 99998754 44466665532        211                      


Q ss_pred             chHHHHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCcccccCChhhHHHHHhhh---ccch--hhhcccCchhh
Q 044391          409 EPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAE---SWRL--ELLIDDIDATI  483 (691)
Q Consensus       409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~e~L~~~e---~w~l--elLvd~id~~I  483 (691)
                           +.+.+.|++++.|++++++ +|+.+...        |    +.+.+.+.+.-++.   .|..  ..+..-.+..+
T Consensus        79 -----~~l~~~~~v~~~Pt~~~~~-~g~~~~~~--------g----~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~  140 (241)
T 3idv_A           79 -----SVLASRFDVSGYPTIKILK-KGQAVDYE--------G----SRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENF  140 (241)
T ss_dssp             -----HHHHHHTTCCSSSEEEEEE-TTEEEECC--------S----CSCHHHHHHHHHHHHSTTCCCCCCSSEECCTTTH
T ss_pred             -----HHHHHhcCCCcCCEEEEEc-CCCccccc--------C----cccHHHHHHHHhhccCcccccccccceeccHHHH
Confidence                 1356779999999999996 57665322        2    23333333322221   1211  11111112234


Q ss_pred             hhhhcCCcEEEEEccCChhHH---HHHHHHHHHHHHHh---CCceeeEEecccC
Q 044391          484 LEWMKEERYICLYGGGDIEWI---RRFTTSAKAVARAA---QINLGMAYVGKNN  531 (691)
Q Consensus       484 ~~~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a---~~~~E~v~Vgkdn  531 (691)
                      ...++.++.++++|.+  .||   +.+.+.+.++++..   +..+.++.|.-+.
T Consensus       141 ~~~~~~~~~~~v~f~a--~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~  192 (241)
T 3idv_A          141 DEVVNDADIILVEFYA--PWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA  192 (241)
T ss_dssp             HHHHHHCSEEEEEEEC--TTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTT
T ss_pred             HHhhccCCeEEEEEEC--CCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCC
Confidence            4557789999999999  665   99999998887763   2347777776553

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.29  E-value=2.2e-06  Score=83.88  Aligned_cols=103  Identities=11%  Similarity=0.040  Sum_probs=74.5

Q ss_pred             CCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc---
Q 044391          323 SRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA---  395 (691)
Q Consensus       323 ~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~---  395 (691)
                      +++.|.+++++||.|+|+|- +.||++|  +++.|. +|+++++   .+++||.|++ |     +.+..+.|-+-+.   
T Consensus        37 ~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~---~~v~vv~Is~-D-----~~~~~~~~~~~~~~~~  107 (211)
T 2pn8_A           37 EFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS---INTEVVACSV-D-----SQFTHLAWINTPRRQG  107 (211)
T ss_dssp             EEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHT---TTEEEEEEES-S-----CHHHHHHHHTSCGGGT
T ss_pred             CCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEEC-C-----CHHHHHHHHHHhhhcc
Confidence            34689999999999999998 9999876  567799 9999974   4699999996 4     2344455654331   


Q ss_pred             ---CCCeeeecCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceeccc
Q 044391          396 ---MMPWYTVQHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILNQN  441 (691)
Q Consensus       396 ---~MPWyAVp~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~N  441 (691)
                         .++|-.+.-++       +.+.+.|++.      ..|..+++|++|+++...
T Consensus       108 g~~~~~fp~l~D~~-------~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~  155 (211)
T 2pn8_A          108 GLGPIRIPLLSDLT-------HQISKDYGVYLEDSGHTLRGLFIIDDKGILRQIT  155 (211)
T ss_dssp             CCCSCSSCEEECTT-------SHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             CccCCceEEEECCc-------hHHHHHcCCcccCCCcccceEEEECCCCEEEEEE
Confidence               34443332211       2345568884      599999999999998653

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.28  E-value=3.8e-06  Score=79.18  Aligned_cols=114  Identities=13%  Similarity=0.151  Sum_probs=72.2

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccC-CCCC-ChhhHHHHHH-
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDR-SIAW-DEGYRQKFEQ-  392 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~-s~~W-~D~d~~~F~~-  392 (691)
                      +...+|+.+.+++++||.|+|+|.+.||++|  +++.|. +|++++.+   +++||.|++-+. ..+- +.+..++|-+ 
T Consensus        34 l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~---~v~vv~vs~d~~~~~e~~~~~~~~~~~~~  110 (181)
T 2p31_A           34 AVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPH---HFNVLAFPCNQFGQQEPDSNKEIESFARR  110 (181)
T ss_dssp             EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---TEEEEEEECCCSTTCCCSCHHHHHHHHHH
T ss_pred             eecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcC---CEEEEEEECcCCCCCCCCCHHHHHHHHHh
Confidence            3345677899999999999999999999887  567899 99999743   599999986210 0000 2333445543 


Q ss_pred             -HhcCCCeeee-cCCCCCchHHHHHHHHhhCcCCce-------EEEEeCCCCceecc
Q 044391          393 -LQAMMPWYTV-QHPTIIEPAVVKYAKEVWKFSKKA-------ILVPVDPQGRILNQ  440 (691)
Q Consensus       393 -~~~~MPWyAV-p~~d~i~~~~~r~ike~f~~~~iP-------~LVvL~pqGkv~~~  440 (691)
                       +.-..|.++- ........+..++     .+.+.|       +.+++|++|+++..
T Consensus       111 ~~~~~~p~~~~~d~~g~~~~~~~~~-----~~~~~P~~~~~~~~~~lid~~G~i~~~  162 (181)
T 2p31_A          111 TYSVSFPMFSKIAVTGTGAHPAFKY-----LAQTSGKEPTWNFWKYLVAPDGKVVGA  162 (181)
T ss_dssp             HHCCCSCBBCCCCCSSTTSCHHHHH-----HHHHHSCCCCSTTCEEEECTTSCEEEE
T ss_pred             hcCCCceeEeecccCCccchhhhhh-----hhhcCCCccccceeEEEEcCCCCEEEE
Confidence             3333443331 1111001112233     234567       89999999999864

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=98.27  E-value=3.5e-06  Score=82.37  Aligned_cols=115  Identities=12%  Similarity=0.061  Sum_probs=76.6

Q ss_pred             CC-CceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccC---CCCCChhhHHHHHHH-
Q 044391          322 SS-RTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDR---SIAWDEGYRQKFEQL-  393 (691)
Q Consensus       322 ~~-~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~---s~~W~D~d~~~F~~~-  393 (691)
                      .+ |+.|.+++++||.|+|+|-+.||++|  +++.|+ +|++.+.+   +++||-||+ |.   ..+-+.++.++|-.+ 
T Consensus        34 ~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~---g~~vv~v~~-d~~~~~e~d~~~~i~~f~~~~  109 (208)
T 2f8a_A           34 LAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR---GLVVLGFPC-NQFGHQENAKNEEILNSLKYV  109 (208)
T ss_dssp             TTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---TEEEEEEEC-CCSTTTTCSCHHHHHHHHHHT
T ss_pred             CCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCC---CeEEEEEEC-CcccccCCCCHHHHHHHHHhc
Confidence            44 77899999999999999999999887  468899 99998743   599999996 20   001123444566542 


Q ss_pred             ----hcCCCeeeecCCC---CCchHHHHHHHHhhC-------------------------cCCceEEEEeCCCCceecc
Q 044391          394 ----QAMMPWYTVQHPT---IIEPAVVKYAKEVWK-------------------------FSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       394 ----~~~MPWyAVp~~d---~i~~~~~r~ike~f~-------------------------~~~iP~LVvL~pqGkv~~~  440 (691)
                          ....++-.+.-.+   ....+..+++++.+.                         ++..|+.+++|++|+++..
T Consensus       110 ~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~~G~i~~~  188 (208)
T 2f8a_A          110 RPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRR  188 (208)
T ss_dssp             SSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEE
T ss_pred             ccccccccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcCCCcEEEE
Confidence                2233322221001   001246677776543                         4556999999999999865

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=97.60  E-value=1e-07  Score=86.76  Aligned_cols=104  Identities=16%  Similarity=0.184  Sum_probs=68.2

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChhh--hHHHH--HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCC
Q 044391          322 SSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH--LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMM  397 (691)
Q Consensus       322 ~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~--iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~M  397 (691)
                      .+|+.+.+++++||.|+|+|.+.||++|.  .+.|.  +|++.+.  +.++++|.|++        |.+.+....+...+
T Consensus        21 ~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~--~~~~~vv~v~~--------d~~~~~~~~~~~~~   90 (159)
T 2ls5_A           21 TDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKD--NADFALIGIDR--------DEPLEKVLAFAKST   90 (159)
Confidence            45678999999999999999999998874  34444  5555541  35799999986        22222233333332


Q ss_pred             CeeeecCCCCCchHHHHHHHHhhC--cCCceEEEEeCCCCceecc
Q 044391          398 PWYTVQHPTIIEPAVVKYAKEVWK--FSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       398 PWyAVp~~d~i~~~~~r~ike~f~--~~~iP~LVvL~pqGkv~~~  440 (691)
                      .+   +|+-..+.  ...+.+.|+  +.+.|+++++|++|+++..
T Consensus        91 ~~---~~~~~~d~--~~~~~~~~~~~~~~~P~~~lid~~G~i~~~  130 (159)
T 2ls5_A           91 GV---TYPLGLDP--GADIFAKYALRDAGITRNVLIDREGKIVKL  130 (159)
Confidence            22   23322222  234566788  5679999999999998854

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=98.26  E-value=6.5e-07  Score=84.25  Aligned_cols=108  Identities=8%  Similarity=-0.010  Sum_probs=74.6

Q ss_pred             CCCCceeecceecCcE-EEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCC---CChhhHHHHHHH
Q 044391          321 GSSRTRVNIEVLRRKH-VLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIA---WDEGYRQKFEQL  393 (691)
Q Consensus       321 g~~~~kV~Is~L~gK~-VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~---W~D~d~~~F~~~  393 (691)
                      ..+|+.+.+++++||. |+|+|.+.||++|  +++.|. +|++.+.+   +++||.|++ |....   -+.+..+.|-.-
T Consensus        32 ~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---~v~vv~v~~-d~~~~~~~d~~~~~~~~~~~  107 (196)
T 2ywi_A           32 VIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPK---GVSFVAINS-NDAEQYPEDSPENMKKVAEE  107 (196)
T ss_dssp             TTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGG---TCEEEEEEC-SCTTTCGGGSHHHHHHHHHH
T ss_pred             cCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhC---CcEEEEEEC-CccccccccCHHHHHHHHHH
Confidence            5678889999999995 9999999999776  457799 99998743   599999986 21000   123333445332


Q ss_pred             hcCCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          394 QAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       394 ~~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      + ..+|-.+.-++   .    .+.+.|++.+.|+++++|++|+++..
T Consensus       108 ~-~~~~~~~~d~~---~----~~~~~~~v~~~P~~~lid~~G~i~~~  146 (196)
T 2ywi_A          108 L-GYPFPYLYDET---Q----EVAKAYDAACTPDFYIFDRDLKCVYR  146 (196)
T ss_dssp             H-TCCSCEEECSS---C----HHHHHHTCCEESEEEEEETTCBEEEE
T ss_pred             c-CCCceEEECCc---h----HHHHHhCCCCCCeEEEEcCCCeEEEc
Confidence            2 23333222211   2    34456899999999999999999865

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=98.20  E-value=4.5e-06  Score=76.59  Aligned_cols=99  Identities=15%  Similarity=0.006  Sum_probs=69.2

Q ss_pred             CCceeeccee-cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCC
Q 044391          323 SRTRVNIEVL-RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMP  398 (691)
Q Consensus       323 ~~~kV~Is~L-~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MP  398 (691)
                      +|..+..+.+ +||.|+|+|.+.||++|.  .+.|. ++++       ++++|.|++-+     +.+...+|-.-+ ..|
T Consensus        39 ~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-------~v~vv~v~~~~-----~~~~~~~~~~~~-~~~  105 (168)
T 2b1k_A           39 PGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-------GIRVVGMNYKD-----DRQKAISWLKEL-GNP  105 (168)
T ss_dssp             TTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-------TCCEEEEEESC-----CHHHHHHHHHHH-CCC
T ss_pred             CCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC-------CCEEEEEECCC-----ChHHHHHHHHHc-CCC
Confidence            5677888885 999999999999998874  45566 6653       59999998722     233445554432 456


Q ss_pred             eeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          399 WYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       399 WyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      |..+-...      ...+.+.|++.+.|+.+++|++|+++..
T Consensus       106 ~~~~~~d~------~~~~~~~~~v~~~P~~~lid~~G~i~~~  141 (168)
T 2b1k_A          106 YALSLFDG------DGMLGLDLGVYGAPETFLIDGNGIIRYR  141 (168)
T ss_dssp             CSEEEEET------TCHHHHHHTCCSSSEEEEECTTSBEEEE
T ss_pred             CceeeECc------chHHHHHcCccccCEEEEECCCCeEEEE
Confidence            54322211      1235567899999999999999999853

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=98.20  E-value=5.3e-06  Score=79.11  Aligned_cols=101  Identities=14%  Similarity=0.109  Sum_probs=73.3

Q ss_pred             ceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc---CC
Q 044391          325 TRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA---MM  397 (691)
Q Consensus       325 ~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~---~M  397 (691)
                      +.|.+++++||.|+|+|= +.||++|  +++.|. +|+++++   .+++||.|+. |     +.+..+.|-+-+.   .+
T Consensus        21 ~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~---~~v~vv~Is~-d-----~~~~~~~~~~~~~~~~~~   91 (186)
T 1n8j_A           21 IEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQK---LGVDVYSVST-D-----THFTHKAWHSSSETIAKI   91 (186)
T ss_dssp             EEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHH---TTEEEEEEES-S-----CHHHHHHHHHHCTTGGGC
T ss_pred             eEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHH---CCCEEEEEEC-C-----CHHHHHHHHHHcCcccCC
Confidence            689999999999999985 5899776  567799 9999974   4699999995 4     2444566765442   45


Q ss_pred             CeeeecCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceeccc
Q 044391          398 PWYTVQHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILNQN  441 (691)
Q Consensus       398 PWyAVp~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~N  441 (691)
                      +|..+.-++   .+    +.+.|++.      ..|..+++|++|+++...
T Consensus        92 ~fp~l~D~~---~~----~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~  134 (186)
T 1n8j_A           92 KYAMIGDPT---GA----LTRNFDNMREDEGLADRATFVVDPQGIIQAIE  134 (186)
T ss_dssp             CSEEEECTT---SH----HHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             ceeEEECCc---hH----HHHHhCCccCCCCceeeEEEEECCCCeEEEEE
Confidence            554443222   22    44557876      369999999999998653

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=98.19  E-value=8.7e-06  Score=75.27  Aligned_cols=105  Identities=7%  Similarity=0.001  Sum_probs=73.9

Q ss_pred             eecCCCCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH
Q 044391          318 VVDGSSRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL  393 (691)
Q Consensus       318 l~~g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~  393 (691)
                      -+...+|+.|++++++||.|+|+|= +.||++|  +++.|. +|+++     .+++||.|+. |     +.+..++|-+-
T Consensus        26 ~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-----~~v~vv~is~-d-----~~~~~~~~~~~   94 (163)
T 1psq_A           26 SLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-----DNTVVLTVSM-D-----LPFAQKRWCGA   94 (163)
T ss_dssp             EEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-----TTEEEEEEES-S-----CHHHHHHHHHH
T ss_pred             EEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-----CCcEEEEEEC-C-----CHHHHHHHHHh
Confidence            3445678899999999999999996 5899766  556788 88877     4599999996 4     24455667554


Q ss_pred             hcCC-CeeeecC-CCCCchHHHHHHHHhhCcC----Cc--eEEEEeCCCCceeccc
Q 044391          394 QAMM-PWYTVQH-PTIIEPAVVKYAKEVWKFS----KK--AILVPVDPQGRILNQN  441 (691)
Q Consensus       394 ~~~M-PWyAVp~-~d~i~~~~~r~ike~f~~~----~i--P~LVvL~pqGkv~~~N  441 (691)
                      + .. +|..+.- ++   .    .+.+.|++.    +.  |..+++|++|+++...
T Consensus        95 ~-~~~~~~~l~D~~~---~----~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~  142 (163)
T 1psq_A           95 E-GLDNAIMLSDYFD---H----SFGRDYALLINEWHLLARAVFVLDTDNTIRYVE  142 (163)
T ss_dssp             H-TCTTSEEEECTTT---C----HHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEE
T ss_pred             c-CCCCcEEecCCch---h----HHHHHhCCccccCCceEEEEEEEcCCCeEEEEE
Confidence            3 34 4433322 21   2    344557876    43  9999999999998654

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.18  E-value=1e-06  Score=81.14  Aligned_cols=105  Identities=10%  Similarity=0.000  Sum_probs=72.5

Q ss_pred             eecCCCCceeecceecCcEEEEEEecCC-CChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH
Q 044391          318 VVDGSSRTRVNIEVLRRKHVLLLISSLD-LSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL  393 (691)
Q Consensus       318 l~~g~~~~kV~Is~L~gK~VlL~fSal~-~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~  393 (691)
                      -+...+|+.+++++++||.|+|+|-+.| |++|  +++.|. +|+++     .+++||.|++ |     +.+..++|-+-
T Consensus        28 ~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-----~~~~vv~is~-d-----~~~~~~~~~~~   96 (167)
T 2jsy_A           28 TVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-----GDVNVYTISA-D-----LPFAQARWCGA   96 (167)
T ss_dssp             EEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-----SSCEEEEEEC-S-----SGGGTSCCGGG
T ss_pred             EEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-----CCCEEEEEEC-C-----CHHHHHHHHHh
Confidence            3345677889999999999999999999 8776  457799 99988     3599999986 3     12222333332


Q ss_pred             hcCC-CeeeecC-CCCCchHHHHHHHHhhCcCCc------eEEEEeCCCCceeccc
Q 044391          394 QAMM-PWYTVQH-PTIIEPAVVKYAKEVWKFSKK------AILVPVDPQGRILNQN  441 (691)
Q Consensus       394 ~~~M-PWyAVp~-~d~i~~~~~r~ike~f~~~~i------P~LVvL~pqGkv~~~N  441 (691)
                      + .+ +|..+.- ++       ..+.+.|++...      |..+++|++|+++...
T Consensus        97 ~-~~~~~~~~~d~~~-------~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~  144 (167)
T 2jsy_A           97 N-GIDKVETLSDHRD-------MSFGEAFGVYIKELRLLARSVFVLDENGKVVYAE  144 (167)
T ss_dssp             S-SCTTEEEEEGGGT-------CHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEE
T ss_pred             c-CCCCceEeeCCch-------hHHHHHhCCccccCCceeeEEEEEcCCCcEEEEE
Confidence            2 22 3433322 21       234456888763      9999999999998654

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=98.17  E-value=6.9e-06  Score=76.20  Aligned_cols=105  Identities=10%  Similarity=0.036  Sum_probs=74.6

Q ss_pred             ceecCCCCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH
Q 044391          317 PVVDGSSRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ  392 (691)
Q Consensus       317 ~l~~g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~  392 (691)
                      +-+...+|+.|++++++||.|+|+|= +.||++|  +++.|. +|++      .+++||.||. |     +.+..++|-+
T Consensus        29 f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~------~~~~vv~is~-d-----~~~~~~~~~~   96 (166)
T 3p7x_A           29 FTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK------EEGIVLTISA-D-----LPFAQKRWCA   96 (166)
T ss_dssp             CEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT------TTSEEEEEES-S-----CHHHHHHHHH
T ss_pred             eEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc------CCCEEEEEEC-C-----CHHHHHHHHH
Confidence            34445677889999999998888886 7889776  556788 8877      4599999995 4     3556677765


Q ss_pred             HhcCC-CeeeecCCCCCchHHHHHHHHhhCcCC------ceEEEEeCCCCceecc
Q 044391          393 LQAMM-PWYTVQHPTIIEPAVVKYAKEVWKFSK------KAILVPVDPQGRILNQ  440 (691)
Q Consensus       393 ~~~~M-PWyAVp~~d~i~~~~~r~ike~f~~~~------iP~LVvL~pqGkv~~~  440 (691)
                      -+ .+ +|-.+--+.  +.    .+.+.|++..      .|..+++|++|+++..
T Consensus        97 ~~-~~~~~~~l~D~~--~~----~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~  144 (166)
T 3p7x_A           97 SA-GLDNVITLSDHR--DL----SFGENYGVVMEELRLLARAVFVLDADNKVVYK  144 (166)
T ss_dssp             HH-TCSSCEEEECTT--TC----HHHHHHTCEETTTTEECCEEEEECTTCBEEEE
T ss_pred             Hc-CCCceEEccCCc--hh----HHHHHhCCccccCCceeeEEEEECCCCeEEEE
Confidence            44 34 444443320  11    3445578875      8999999999999865

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=98.17  E-value=2.1e-06  Score=91.38  Aligned_cols=109  Identities=12%  Similarity=0.045  Sum_probs=74.4

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCC
Q 044391          321 GSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMM  397 (691)
Q Consensus       321 g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~M  397 (691)
                      ..+|+.+.+++++||.|+|+|.+.||++|  +++.|. +|++++.   .+++||-|++-+...+=+.+.-++|-+-+ .+
T Consensus        69 d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~---~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~-~l  144 (352)
T 2hyx_A           69 TPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKD---SGLAVIGVHTPEYAFEKVPGNVAKGAANL-GI  144 (352)
T ss_dssp             SGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG---GTEEEEEEECCSSGGGGCHHHHHHHHHHH-TC
T ss_pred             CCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhc---CCeEEEEEECCcccccCCHHHHHHHHHHc-CC
Confidence            34667899999999999999999999877  457799 9999874   35999999851100000122334443322 34


Q ss_pred             CeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          398 PWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       398 PWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      +|-.+--.+       ..+.+.|++.+.|+++++|++|+++..
T Consensus       145 ~fpv~~D~~-------~~l~~~ygV~~~Pt~~lID~~G~Iv~~  180 (352)
T 2hyx_A          145 SYPIALDNN-------YATWTNYRNRYWPAEYLIDATGTVRHI  180 (352)
T ss_dssp             CSCEEECTT-------SHHHHHTTCCEESEEEEECTTSBEEEE
T ss_pred             CccEEeCCc-------HHHHHHcCCCccCEEEEEeCCCeEEEE
Confidence            443222211       235566999999999999999999875

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=98.16  E-value=1.3e-05  Score=79.49  Aligned_cols=118  Identities=14%  Similarity=0.057  Sum_probs=77.1

Q ss_pred             cCCC-CceeecceecCcEEEEEEecCCCChh-hhHHHH-HHHHhhccCCCCeeEEEEeccc--CCCCCChhhHHHHHH--
Q 044391          320 DGSS-RTRVNIEVLRRKHVLLLISSLDLSDE-EILVLH-LYREHKAREEFDYAIVWLPIVD--RSIAWDEGYRQKFEQ--  392 (691)
Q Consensus       320 ~g~~-~~kV~Is~L~gK~VlL~fSal~~~~~-e~~~L~-iY~~lk~~~~~~fEIVwIpiVd--~s~~W~D~d~~~F~~--  392 (691)
                      -..+ |+.|++++++||.|+|+|-+.||++| +++-|+ +|++.+.+   +++||-||.=+  ...+-+.++-++|-+  
T Consensus        41 ~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~e~p~L~~l~~~~~~~---g~~Vlgvs~d~f~~~e~~~~~~i~~f~~~~  117 (215)
T 2i3y_A           41 IALNKNEYVSFKQYVGKHILFVNVATYCGLTAQYPELNALQEELKPY---GLVVLGFPCNQFGKQEPGDNKEILPGLKYV  117 (215)
T ss_dssp             EBSSSSCEEEGGGGTTSEEEEEEECSSSGGGGGHHHHHHHHHHHGGG---TEEEEEEECCCSTTCCCSCHHHHHHHHHHT
T ss_pred             eeCCCCCEEcHHHhCCCEEEEEEeCCCCCChHhHHHHHHHHHHhccC---CeEEEEEEccccCcCCCCCHHHHHHHHHhc
Confidence            3445 78899999999999999999999776 677899 99999743   59999999611  011223344566755  


Q ss_pred             -----HhcCCCeeeecCCC-CCchHHHHHHHHhhC---------------------cCCceEEEEeCCCCceecc
Q 044391          393 -----LQAMMPWYTVQHPT-IIEPAVVKYAKEVWK---------------------FSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       393 -----~~~~MPWyAVp~~d-~i~~~~~r~ike~f~---------------------~~~iP~LVvL~pqGkv~~~  440 (691)
                           +.-+.|.++-.-.+ ....++.+++++...                     ++..|+-+++|++|+++..
T Consensus       118 ~~~~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~vv~~  192 (215)
T 2i3y_A          118 RPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMR  192 (215)
T ss_dssp             SSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSCEEEE
T ss_pred             cchhccCccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCCeEEEE
Confidence                 22234444321110 001245677765421                     1223789999999999865

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=98.15  E-value=2.8e-06  Score=79.83  Aligned_cols=104  Identities=12%  Similarity=0.054  Sum_probs=70.6

Q ss_pred             eecCCCCceeecceecCcEEEEEEecCC-CChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH
Q 044391          318 VVDGSSRTRVNIEVLRRKHVLLLISSLD-LSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL  393 (691)
Q Consensus       318 l~~g~~~~kV~Is~L~gK~VlL~fSal~-~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~  393 (691)
                      -+...+|+.+.+++++||.|+|+|-+.| |++|  +++.|. +|++      .+++||.|++ |     +....++|-+-
T Consensus        28 ~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~------~~v~vv~Is~-D-----~~~~~~~~~~~   95 (175)
T 1xvq_A           28 TLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA------SGATVLCVSK-D-----LPFAQKRFCGA   95 (175)
T ss_dssp             EEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH------TTCEEEEEES-S-----CHHHHTTCC--
T ss_pred             EEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh------cCCEEEEEEC-C-----CHHHHHHHHHH
Confidence            3445677889999999999999999998 7655  567788 9987      3599999986 3     12222333221


Q ss_pred             hcCC-CeeeecCCCCCchHHHHHHHHhhCcCCc---------eEEEEeCCCCceeccc
Q 044391          394 QAMM-PWYTVQHPTIIEPAVVKYAKEVWKFSKK---------AILVPVDPQGRILNQN  441 (691)
Q Consensus       394 ~~~M-PWyAVp~~d~i~~~~~r~ike~f~~~~i---------P~LVvL~pqGkv~~~N  441 (691)
                      + .+ +|..+.-++       +.+.+.|++...         |..+++|++|+++...
T Consensus        96 ~-~~~~~~~l~D~~-------~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~  145 (175)
T 1xvq_A           96 E-GTENVMPASAFR-------DSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTE  145 (175)
T ss_dssp             -----CEEEEECTT-------SSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEE
T ss_pred             c-CCCCceEeeCCH-------HHHHHHhCCcccccccCCcccceEEEECCCCeEEEEE
Confidence            1 22 343332221       234556888877         9999999999998654

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=98.14  E-value=5e-06  Score=77.19  Aligned_cols=105  Identities=10%  Similarity=0.190  Sum_probs=72.1

Q ss_pred             ecCCCCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ  394 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~  394 (691)
                      +-..+|+.|++++++||.|+|+|= +.||++|  +++-|. .|++.+   +.++++|-|+. |     +.+..++|-+- 
T Consensus        15 l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~~~~v~vs~-d-----~~~~~~~~~~~-   84 (157)
T 4g2e_A           15 LPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFN---QVNAVVLGISV-D-----PPFSNKAFKEH-   84 (157)
T ss_dssp             EEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGG---GCSSEEEEEES-S-----CHHHHHHHHHH-
T ss_pred             eECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhccccccccc---ccCceEeeecc-c-----chhHHHHHHHH-
Confidence            345677889999999999999986 9999876  556688 999886   44689999985 4     24555677653 


Q ss_pred             cCCCeeeecCCCCCchHHHHHHHHhhCcC-----------CceEEEEeCCCCceecc
Q 044391          395 AMMPWYTVQHPTIIEPAVVKYAKEVWKFS-----------KKAILVPVDPQGRILNQ  440 (691)
Q Consensus       395 ~~MPWyAVp~~d~i~~~~~r~ike~f~~~-----------~iP~LVvL~pqGkv~~~  440 (691)
                      ..+||-.+--++   .+    +.+.|++.           ..|+..|+|++|+++..
T Consensus        85 ~~~~~p~l~D~~---~~----v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~  134 (157)
T 4g2e_A           85 NKLNFTILSDYN---RE----VVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYK  134 (157)
T ss_dssp             TTCCSEEEECTT---SH----HHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEE
T ss_pred             cCCcEEEEEcCC---cH----HHHHcCCccccccCCCcceeeeeEEEECCCCEEEEE
Confidence            355655443222   22    34456653           36889999999999743

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=98.14  E-value=7.1e-06  Score=83.28  Aligned_cols=103  Identities=11%  Similarity=0.044  Sum_probs=74.3

Q ss_pred             CCCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh---
Q 044391          322 SSRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ---  394 (691)
Q Consensus       322 ~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~---  394 (691)
                      .+++.|.+++++||.|+|+|= +.||++|  +++-|. +|+++++   .+++||.|+. |     +.++...|-+-.   
T Consensus        79 ~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~---~gv~vv~IS~-D-----~~~~~~~~~~~~~~~  149 (254)
T 3tjj_A           79 GEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS---INTEVVACSV-D-----SQFTHLAWINTPRRQ  149 (254)
T ss_dssp             TEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHT---TTEEEEEEES-S-----CHHHHHHHHTSCGGG
T ss_pred             CCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHH---cCCEEEEEcC-C-----CHHHHHHHHHHHHHh
Confidence            356689999999999999886 8898665  667799 9999984   4699999995 4     244555665432   


Q ss_pred             ---cCCCeeeecCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceecc
Q 044391          395 ---AMMPWYTVQHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILNQ  440 (691)
Q Consensus       395 ---~~MPWyAVp~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~  440 (691)
                         ..++|-.+.-++       +.+.+.|++.      ..|..++||++|+++..
T Consensus       150 ~g~~~~~fp~l~D~~-------~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~  197 (254)
T 3tjj_A          150 GGLGPIRIPLLSDLT-------HQISKDYGVYLEDSGHTLRGLFIIDDKGILRQI  197 (254)
T ss_dssp             TSCCSCSSCEEECTT-------SHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             cCCcccccceeeCcH-------HHHHHHcCCccccCCCccceEEEECCCCeEEEE
Confidence               145554443322       2345557875      47999999999999865

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.12  E-value=1.9e-05  Score=77.55  Aligned_cols=117  Identities=11%  Similarity=0.016  Sum_probs=75.9

Q ss_pred             CCC-CceeecceecCcEEEEEEecCCCChh-hhHHHH-HHHHhhccCCCCeeEEEEeccc--CCCCCChhhHHHHHHH--
Q 044391          321 GSS-RTRVNIEVLRRKHVLLLISSLDLSDE-EILVLH-LYREHKAREEFDYAIVWLPIVD--RSIAWDEGYRQKFEQL--  393 (691)
Q Consensus       321 g~~-~~kV~Is~L~gK~VlL~fSal~~~~~-e~~~L~-iY~~lk~~~~~~fEIVwIpiVd--~s~~W~D~d~~~F~~~--  393 (691)
                      ..+ |+.|++++++||.|+|+|-+.||++| +++-|+ +|++.+.+   +++||-||.-+  ...+-+.++.+.|-.+  
T Consensus        24 d~~~G~~v~Ls~~kGKvvll~F~At~C~~c~e~p~L~~l~~~~~~~---g~~vlgvs~d~f~~~e~~~~~~i~~f~~~~~  100 (207)
T 2r37_A           24 TIDGEEYIPFKQYAGKYVLFVNVASYGGLTGQYIELNALQEELAPF---GLVILGFPCNQFGKQEPGENSEILPTLKYVR  100 (207)
T ss_dssp             BTTSSCEEEGGGGTTSEEEEEEECSSSTTTTHHHHHHHHHHHHGGG---TEEEEEEECCCBTTCCCSCHHHHHHHHHHTS
T ss_pred             eCCCCCEEcHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHhccC---CEEEEEEECcccCcCCCCCHHHHHHHHHhcc
Confidence            345 78899999999999999999999776 677899 99999854   59999999511  0011233445667552  


Q ss_pred             ---hc--CCCeeeecCCC-CCchHHHHHHHHhhC---------------------cCCceEEEEeCCCCceecc
Q 044391          394 ---QA--MMPWYTVQHPT-IIEPAVVKYAKEVWK---------------------FSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       394 ---~~--~MPWyAVp~~d-~i~~~~~r~ike~f~---------------------~~~iP~LVvL~pqGkv~~~  440 (691)
                         ..  ..|.++-.-.+ ....+..+++++...                     ++..|+-+++|++|+++..
T Consensus       101 ~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~i~~~  174 (207)
T 2r37_A          101 PGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMR  174 (207)
T ss_dssp             SCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSCEEEE
T ss_pred             hhhccCccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCCcEEEE
Confidence               22  33444311110 001235667765432                     1223789999999999865

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=98.12  E-value=1e-05  Score=74.20  Aligned_cols=105  Identities=13%  Similarity=0.200  Sum_probs=74.6

Q ss_pred             eecCCCCceeecceecCc--EEEEEE-ecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHH
Q 044391          318 VVDGSSRTRVNIEVLRRK--HVLLLI-SSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFE  391 (691)
Q Consensus       318 l~~g~~~~kV~Is~L~gK--~VlL~f-Sal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~  391 (691)
                      -+...+|+.|.+++++||  .|+|+| .+.|||+|  +++.|. +|++++.+   . +||.|+. |     +.+..++|-
T Consensus        17 ~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~---~-~vv~is~-d-----~~~~~~~~~   86 (159)
T 2a4v_A           17 SLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY---A-AVFGLSA-D-----SVTSQKKFQ   86 (159)
T ss_dssp             EEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT---C-EEEEEES-C-----CHHHHHHHH
T ss_pred             EEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhC---C-cEEEEeC-C-----CHHHHHHHH
Confidence            344567788999999998  788887 69999776  567799 99999854   3 9999985 3     244456665


Q ss_pred             HHhcCCCeeeecCCCCCchHHHHHHHHhhCcCCce------EEEEeCCCCceeccc
Q 044391          392 QLQAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKA------ILVPVDPQGRILNQN  441 (691)
Q Consensus       392 ~~~~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP------~LVvL~pqGkv~~~N  441 (691)
                      +-+ .++|..+--++       ..+.+.|++...|      ..+++ ++|+++...
T Consensus        87 ~~~-~~~~~~l~D~~-------~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~  133 (159)
T 2a4v_A           87 SKQ-NLPYHLLSDPK-------REFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKR  133 (159)
T ss_dssp             HHH-TCSSEEEECTT-------CHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEE
T ss_pred             HHh-CCCceEEECCc-------cHHHHHhCCcccccCCccceEEEE-cCCEEEEEE
Confidence            533 45654443222       2345668999888      77778 999998653

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=98.10  E-value=1e-05  Score=75.04  Aligned_cols=106  Identities=13%  Similarity=0.097  Sum_probs=71.9

Q ss_pred             eecCCCCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH
Q 044391          318 VVDGSSRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL  393 (691)
Q Consensus       318 l~~g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~  393 (691)
                      -+...+|+.|.+++++||.|+|+|= +.||++|  +++.|. .|+++     .+++||.|+. |     +.+..++|-+-
T Consensus        27 ~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-----~~v~vv~Is~-d-----~~~~~~~~~~~   95 (165)
T 1q98_A           27 ILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-----SNTIVLCISA-D-----LPFAQARFCGA   95 (165)
T ss_dssp             EEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-----TTEEEEEEES-S-----CHHHHTTCTTT
T ss_pred             EEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-----CCCEEEEEeC-C-----CHHHHHHHHHH
Confidence            3445678899999999999999985 8999766  567788 99887     3599999985 4     23333344332


Q ss_pred             hcCC-CeeeecCCCCCchHHHHHHHHhhCcCC---------ceEEEEeCCCCceeccc
Q 044391          394 QAMM-PWYTVQHPTIIEPAVVKYAKEVWKFSK---------KAILVPVDPQGRILNQN  441 (691)
Q Consensus       394 ~~~M-PWyAVp~~d~i~~~~~r~ike~f~~~~---------iP~LVvL~pqGkv~~~N  441 (691)
                       ..+ +|..+--+.  +    ..+.+.|++..         .|..+++|++|+++...
T Consensus        96 -~~~~~~~~l~D~~--~----~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~  146 (165)
T 1q98_A           96 -EGIENAKTVSTFR--N----HALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQ  146 (165)
T ss_dssp             -TTCTTEEEEECTT--C----THHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             -cCCCceEEeeccc--c----chHHHHhCceecccccCCccceeEEEEcCCCEEEEEE
Confidence             234 454333220  1    23344577743         49999999999998654

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=98.08  E-value=9.9e-06  Score=78.59  Aligned_cols=107  Identities=14%  Similarity=0.091  Sum_probs=73.4

Q ss_pred             ceecCCCCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH
Q 044391          317 PVVDGSSRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ  392 (691)
Q Consensus       317 ~l~~g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~  392 (691)
                      +-+...+|+.|++++++||.|+|+|= +.||++|  +++.|. +|+++     .+++||.||. |     +.+..++|-+
T Consensus        61 f~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-----~~v~vv~Is~-D-----~~~~~~~~~~  129 (200)
T 3zrd_A           61 FTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-----ENTVVLCISS-D-----LPFAQSRFCG  129 (200)
T ss_dssp             CEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-----TTEEEEEEES-S-----CHHHHTTCTT
T ss_pred             eEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-----CCCEEEEEEC-C-----CHHHHHHHHH
Confidence            33445677889999999999999886 7798665  667799 99987     3599999985 3     2333444543


Q ss_pred             HhcCC-CeeeecCCCCCchHHHHHHHHhhCcC-------C--ceEEEEeCCCCceeccc
Q 044391          393 LQAMM-PWYTVQHPTIIEPAVVKYAKEVWKFS-------K--KAILVPVDPQGRILNQN  441 (691)
Q Consensus       393 ~~~~M-PWyAVp~~d~i~~~~~r~ike~f~~~-------~--iP~LVvL~pqGkv~~~N  441 (691)
                      -+ .+ +|-.+.-+.      ...+.+.|++.       +  .|..+++|++|+++...
T Consensus       130 ~~-~~~~f~~l~D~~------~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~  181 (200)
T 3zrd_A          130 AE-GLSNVITLSTLR------GADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSE  181 (200)
T ss_dssp             TT-TCTTEEEEETTS------CTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             Hc-CCCCceEEecCc------hHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEE
Confidence            32 34 555443320      12344557774       3  59999999999998643

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=98.06  E-value=1.1e-05  Score=75.07  Aligned_cols=103  Identities=10%  Similarity=0.022  Sum_probs=71.5

Q ss_pred             ecCCCCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ  394 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~  394 (691)
                      +...+|+.+++++++||.|+|+|= +.||++|  +++.|. +|+++     .+++||.|+. |     +.+..++|-+-+
T Consensus        32 l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-----~~v~vv~Is~-d-----~~~~~~~~~~~~  100 (171)
T 2yzh_A           32 VVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM-----EGVDVTVVSM-D-----LPFAQKRFCESF  100 (171)
T ss_dssp             EEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-----TTEEEEEEES-S-----CHHHHHHHHHHT
T ss_pred             EECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-----CCceEEEEeC-C-----CHHHHHHHHHHc
Confidence            345677889999999999999985 8999776  556788 88877     4699999986 4     244456665533


Q ss_pred             cCC-CeeeecC-CCCCchHHHHHHHHhhCcC-------C--ceEEEEeCCCCceeccc
Q 044391          395 AMM-PWYTVQH-PTIIEPAVVKYAKEVWKFS-------K--KAILVPVDPQGRILNQN  441 (691)
Q Consensus       395 ~~M-PWyAVp~-~d~i~~~~~r~ike~f~~~-------~--iP~LVvL~pqGkv~~~N  441 (691)
                       .. +|..+.- ++   .    .+ +.|++.       +  .|..+++||+|+++...
T Consensus       101 -~~~~~~~l~D~~~---~----~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~  149 (171)
T 2yzh_A          101 -NIQNVTVASDFRY---R----DM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQ  149 (171)
T ss_dssp             -TCCSSEEEECTTT---C----GG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             -CCCCeEEeecCcc---C----cH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEE
Confidence             33 3433322 21   1    23 557774       2  69999999999998653

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=97.96  E-value=9.7e-05  Score=72.75  Aligned_cols=169  Identities=11%  Similarity=0.074  Sum_probs=104.1

Q ss_pred             CCc--eeecce-ecCcEEEEEEe-cCCCChhh---hHHHH-HHHHhhccCCCCe-eEEEEecccCCCCCChhhHHHHHHH
Q 044391          323 SRT--RVNIEV-LRRKHVLLLIS-SLDLSDEE---ILVLH-LYREHKAREEFDY-AIVWLPIVDRSIAWDEGYRQKFEQL  393 (691)
Q Consensus       323 ~~~--kV~Is~-L~gK~VlL~fS-al~~~~~e---~~~L~-iY~~lk~~~~~~f-EIVwIpiVd~s~~W~D~d~~~F~~~  393 (691)
                      +|+  .|++++ ++||.|+|+|= +.|||+|.   ++-|. .|+++++   .++ +||-|+. |     +....+.|-+-
T Consensus        19 ~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~---~~~~~vv~is~-d-----~~~~~~~~~~~   89 (241)
T 1nm3_A           19 GDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKK---YGVDDILVVSV-N-----DTFVMNAWKED   89 (241)
T ss_dssp             TTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHH---TTCCEEEEEES-S-----CHHHHHHHHHH
T ss_pred             CCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH---CCCCEEEEEEc-C-----CHHHHHHHHHh
Confidence            454  799999 99999999986 99997765   67799 9999974   358 9999985 4     23445667553


Q ss_pred             hcCCC-eeeecCCCCCchHHHHHHHHhhCcC-----------CceEEEEeCCCCceecccHHHHHHHhCcccc--cCChh
Q 044391          394 QAMMP-WYTVQHPTIIEPAVVKYAKEVWKFS-----------KKAILVPVDPQGRILNQNAFHMLWIWGNLAF--PFSAE  459 (691)
Q Consensus       394 ~~~MP-WyAVp~~d~i~~~~~r~ike~f~~~-----------~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AF--PFT~~  459 (691)
                      .. .+ |-.+.-++   .+    +.+.|++.           ..|..+++ ++|+++....       |....  ||+..
T Consensus        90 ~~-~~~~~~l~D~~---~~----~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~-------~~~~~~~~~~~~  153 (241)
T 1nm3_A           90 EK-SENISFIPDGN---GE----FTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFI-------EPNEPGDPFKVS  153 (241)
T ss_dssp             TT-CTTSEEEECTT---SH----HHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEE-------CCSCSSCCCSSS
T ss_pred             cC-CCceEEEECCC---cH----HHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEE-------eccCCCccceec
Confidence            32 22 32222221   22    34457764           35888999 9999986532       32222  45444


Q ss_pred             hHHHHHhhhccchhhhcccCchhhhhhhcCCcEEEEEccCChhHHHHHHHHHHHHHHHhCCceeeEEecccChHHH
Q 044391          460 KEAALWKAESWRLELLIDDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKER  535 (691)
Q Consensus       460 r~e~L~~~e~w~lelLvd~id~~I~~~i~egK~I~LYgG~D~~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkdn~~e~  535 (691)
                      ..+++-+.           +++..   + ....|-+|...   || -|..+++++-+..++++|.+-|..+..++.
T Consensus       154 ~~~~il~~-----------l~~~~---i-~~~~i~ly~~~---~C-p~C~~a~~~L~~~~i~~~~~~i~~~~~~~~  210 (241)
T 1nm3_A          154 DADTMLKY-----------LAPQH---Q-VQESISIFTKP---GC-PFCAKAKQLLHDKGLSFEEIILGHDATIVS  210 (241)
T ss_dssp             SHHHHHHH-----------HCTTS---C-CCCCEEEEECS---SC-HHHHHHHHHHHHHTCCCEEEETTTTCCHHH
T ss_pred             CHHHHHHH-----------hhhhc---c-ccceEEEEECC---CC-hHHHHHHHHHHHcCCceEEEECCCchHHHH
Confidence            44443321           12111   2 34458888665   55 344445554444599999999987744333

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=97.95  E-value=7.2e-06  Score=77.05  Aligned_cols=107  Identities=11%  Similarity=0.141  Sum_probs=74.9

Q ss_pred             ceecCCCCceeeccee--cCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHH
Q 044391          317 PVVDGSSRTRVNIEVL--RRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKF  390 (691)
Q Consensus       317 ~l~~g~~~~kV~Is~L--~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F  390 (691)
                      +-+...+|+.|+++++  +||.|.|+|= +.|||+|  +++-|. .|+++++   .++++|-|+. |     +.+..++|
T Consensus        14 F~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~---~~v~vv~is~-d-----~~~~~~~~   84 (164)
T 4gqc_A           14 FTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEK---ANAEVLAISV-D-----SPWCLKKF   84 (164)
T ss_dssp             CEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGG---SSSEEEEEES-S-----CHHHHHHH
T ss_pred             cEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhc---cCceEEEecC-C-----CHHHHHHH
Confidence            3344567889999998  8998888876 8899877  567788 9999874   4689999985 4     24555677


Q ss_pred             HHHhcCCCeeeecCCCCCchHHHHHHHHhhCcC----------CceEEEEeCCCCceecc
Q 044391          391 EQLQAMMPWYTVQHPTIIEPAVVKYAKEVWKFS----------KKAILVPVDPQGRILNQ  440 (691)
Q Consensus       391 ~~~~~~MPWyAVp~~d~i~~~~~r~ike~f~~~----------~iP~LVvL~pqGkv~~~  440 (691)
                      -+- ..+||-.+--++   .    .+.+.|++.          ..|+..|+|++|++...
T Consensus        85 ~~~-~~~~fp~l~D~~---~----~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~  136 (164)
T 4gqc_A           85 KDE-NRLAFNLLSDYN---R----EVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYK  136 (164)
T ss_dssp             HHH-TTCCSEEEECTT---S----HHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEE
T ss_pred             HHh-cCcccceeecCc---h----HHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEE
Confidence            553 345544443332   2    244557763          25788999999999754

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=97.86  E-value=4.7e-05  Score=67.91  Aligned_cols=78  Identities=10%  Similarity=-0.035  Sum_probs=59.4

Q ss_pred             CCceeecceecCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCe
Q 044391          323 SRTRVNIEVLRRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPW  399 (691)
Q Consensus       323 ~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPW  399 (691)
                      .+..+.++.++||.|+++|.+.||++|.-  +.|. ++++++    +++.++.|.+        |++.            
T Consensus        40 ~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~~v~~--------~~~~------------   95 (141)
T 3hxs_A           40 ENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYA----GKIYIYKVNV--------DKEP------------   95 (141)
T ss_dssp             SSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT----TTCEEEEEET--------TTCH------------
T ss_pred             ccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc----CceEEEEEEC--------CCCH------------
Confidence            44568888999999999999999988853  5677 777764    3477777654        2211            


Q ss_pred             eeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          400 YTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       400 yAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                                     .+.+.|++++.|++++++++|+++.
T Consensus        96 ---------------~~~~~~~v~~~Pt~~~~~~~g~~~~  120 (141)
T 3hxs_A           96 ---------------ELARDFGIQSIPTIWFVPMKGEPQV  120 (141)
T ss_dssp             ---------------HHHHHTTCCSSSEEEEECSSSCCEE
T ss_pred             ---------------HHHHHcCCCCcCEEEEEeCCCCEEE
Confidence                           2556789999999999999999763

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=97.82  E-value=7.6e-05  Score=69.28  Aligned_cols=103  Identities=11%  Similarity=0.045  Sum_probs=72.3

Q ss_pred             CCCC--ceeecce-ecCcEEEEEEe-cCCCChhh---hHHHH-HHHHhhccCCCCee-EEEEecccCCCCCChhhHHHHH
Q 044391          321 GSSR--TRVNIEV-LRRKHVLLLIS-SLDLSDEE---ILVLH-LYREHKAREEFDYA-IVWLPIVDRSIAWDEGYRQKFE  391 (691)
Q Consensus       321 g~~~--~kV~Is~-L~gK~VlL~fS-al~~~~~e---~~~L~-iY~~lk~~~~~~fE-IVwIpiVd~s~~W~D~d~~~F~  391 (691)
                      ..+|  +.|++++ ++||.|+|+|= +.||++|.   ++-|. .|+++++   .+++ ||-|+. |     +....++|-
T Consensus        19 ~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~---~~v~~vv~Is~-d-----~~~~~~~~~   89 (162)
T 1tp9_A           19 DEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKS---KGVTEILCISV-N-----DPFVMKAWA   89 (162)
T ss_dssp             CTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHH---TTCCCEEEEES-S-----CHHHHHHHH
T ss_pred             cCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH---CCCCEEEEEEC-C-----CHHHHHHHH
Confidence            4566  7899999 99999999998 89996665   56799 9999974   3588 999985 4     234455665


Q ss_pred             HHhcCC--CeeeecCCCCCchHHHHHHHHhhCcC------C-----ceEEEEeCCCCceeccc
Q 044391          392 QLQAMM--PWYTVQHPTIIEPAVVKYAKEVWKFS------K-----KAILVPVDPQGRILNQN  441 (691)
Q Consensus       392 ~~~~~M--PWyAVp~~d~i~~~~~r~ike~f~~~------~-----iP~LVvL~pqGkv~~~N  441 (691)
                      +-+ ..  ||-.+.-++       +.+.+.|++.      +     .|..+|+| +|+++...
T Consensus        90 ~~~-~~~~~~~~l~D~~-------~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~  143 (162)
T 1tp9_A           90 KSY-PENKHVKFLADGS-------ATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAAN  143 (162)
T ss_dssp             HTC-TTCSSEEEEECTT-------SHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEE
T ss_pred             Hhc-CCCCCeEEEECCC-------chHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEE
Confidence            533 23  443332221       2344557775      3     79999999 99998653

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=97.77  E-value=2e-05  Score=80.16  Aligned_cols=102  Identities=14%  Similarity=0.154  Sum_probs=71.4

Q ss_pred             CCCceeec-cee--cCcE-EEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh
Q 044391          322 SSRTRVNI-EVL--RRKH-VLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ  394 (691)
Q Consensus       322 ~~~~kV~I-s~L--~gK~-VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~  394 (691)
                      ..| +|++ +++  +||. |+++|-+.||+.|  ++..|. .|+++++   .+++||.||+ |     +......|.+..
T Consensus        19 ~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~---~gv~VI~VS~-D-----s~~~~~~w~~~~   88 (249)
T 3a2v_A           19 DHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQR---LGVDLIGLSV-D-----SVFSHIKWKEWI   88 (249)
T ss_dssp             TTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHH---TTEEEEEEES-S-----CHHHHHHHHHHH
T ss_pred             CCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHh---CCcEEEEEEC-C-----CHHHHHHHHHHH
Confidence            344 6999 998  9996 4557899999776  567799 9999984   3699999996 4     234444554321


Q ss_pred             -----cCCCeeeecCCCCCchHHHHHHHHhhCcC-------CceEEEEeCCCCceecc
Q 044391          395 -----AMMPWYTVQHPTIIEPAVVKYAKEVWKFS-------KKAILVPVDPQGRILNQ  440 (691)
Q Consensus       395 -----~~MPWyAVp~~d~i~~~~~r~ike~f~~~-------~iP~LVvL~pqGkv~~~  440 (691)
                           ..++|..+--+       .+.+.+.|++.       ..|.++++||+|+++..
T Consensus        89 ~~~~~~~i~fPil~D~-------~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~  139 (249)
T 3a2v_A           89 ERHIGVRIPFPIIADP-------QGTVARRLGLLHAESATHTVRGVFIVDARGVIRTM  139 (249)
T ss_dssp             HHHTCCCCCSCEEECT-------TSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEE
T ss_pred             HHhcCCCCceeEEECC-------chHHHHHhCCccccCCCcccceEEEECCCCeEEEE
Confidence                 14444333222       23455668887       89999999999998764

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=97.77  E-value=6.8e-05  Score=75.27  Aligned_cols=106  Identities=10%  Similarity=0.057  Sum_probs=72.3

Q ss_pred             ecCCCCceeecceecCc-EEEEEE-ecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH
Q 044391          319 VDGSSRTRVNIEVLRRK-HVLLLI-SSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL  393 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK-~VlL~f-Sal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~  393 (691)
                      +...+| .|.+++++|| .|+|+| .+.|||.|  ++..|. .|+++++   .+++||.||+ |+     ....+.|-+-
T Consensus        14 l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~---~~v~vigIS~-D~-----~~~~~~~~~~   83 (233)
T 2v2g_A           14 ADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKK---RGVKLIALSC-DN-----VADHKEWSED   83 (233)
T ss_dssp             EEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHH---TTEEEEEEES-SC-----HHHHHHHHHH
T ss_pred             EecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHH---cCCEEEEEcC-CC-----HHHHHHHHHH
Confidence            334456 7999999998 777777 58899766  567799 9999974   4699999995 42     3344555442


Q ss_pred             -----hc--CCCeeeecCCCCCchHHHHHHHHhhCcC------------CceEEEEeCCCCceeccc
Q 044391          394 -----QA--MMPWYTVQHPTIIEPAVVKYAKEVWKFS------------KKAILVPVDPQGRILNQN  441 (691)
Q Consensus       394 -----~~--~MPWyAVp~~d~i~~~~~r~ike~f~~~------------~iP~LVvL~pqGkv~~~N  441 (691)
                           ..  .++|.-+--++       +.+.+.|++.            ..|..+++||+|++....
T Consensus        84 i~~~~~~~~~~~fpil~D~~-------~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~  143 (233)
T 2v2g_A           84 VKCLSGVKGDMPYPIIADET-------RELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSI  143 (233)
T ss_dssp             HHHHHTCCSSCSSCEEECTT-------CHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEE
T ss_pred             HHHhhCcccCCceEEEECCh-------HHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEE
Confidence                 12  45554333221       2344557764            479999999999997653

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=97.76  E-value=0.00013  Score=72.44  Aligned_cols=105  Identities=10%  Similarity=0.075  Sum_probs=71.7

Q ss_pred             ecCCCCceeecceecCc--EEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH
Q 044391          319 VDGSSRTRVNIEVLRRK--HVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL  393 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK--~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~  393 (691)
                      +...+| .|++++++||  .|+++|-+.||+.|  ++..|. .|+++++   .+++||.||+ |+     ......|-+-
T Consensus        16 l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~---~~v~vi~IS~-D~-----~~~~~~~~~~   85 (224)
T 1prx_A           16 ANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAK---RNVKLIALSI-DS-----VEDHLAWSKD   85 (224)
T ss_dssp             EEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHT---TTEEEEEEES-SC-----HHHHHHHHHH
T ss_pred             EecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHH---CCCEEEEEcC-CC-----HHHHHHHHHH
Confidence            334556 7999999998  56666789999776  567799 9999974   4699999996 42     3344445432


Q ss_pred             ----h-----cCCCeeeecCCCCCchHHHHHHHHhhCcC------------CceEEEEeCCCCceecc
Q 044391          394 ----Q-----AMMPWYTVQHPTIIEPAVVKYAKEVWKFS------------KKAILVPVDPQGRILNQ  440 (691)
Q Consensus       394 ----~-----~~MPWyAVp~~d~i~~~~~r~ike~f~~~------------~iP~LVvL~pqGkv~~~  440 (691)
                          .     ..++|-.+.-++       +.+.+.|++.            ..|..+++||+|++...
T Consensus        86 i~~~~~~~~~~~~~fpil~D~~-------~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~  146 (224)
T 1prx_A           86 INAYNSEEPTEKLPFPIIDDRN-------RELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLS  146 (224)
T ss_dssp             HHHHTTSCCCSCCSSCEEECTT-------CHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEE
T ss_pred             HHHhhCcccccCcCcceeecCc-------hHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEE
Confidence                1     355554443221       2344557763            37999999999999765

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=97.75  E-value=7.3e-05  Score=73.93  Aligned_cols=102  Identities=9%  Similarity=0.036  Sum_probs=69.8

Q ss_pred             CCceeecceecCc--EEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH----H
Q 044391          323 SRTRVNIEVLRRK--HVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ----L  393 (691)
Q Consensus       323 ~~~kV~Is~L~gK--~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~----~  393 (691)
                      +| .|++++++||  .|+++|-+.||+.|  ++..|. .|+++++   .+++||.||+ |+     ....+.|-+    +
T Consensus        20 ~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~---~~v~vi~vS~-D~-----~~~~~~~~~~i~~~   89 (220)
T 1xcc_A           20 DG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLK---LNCKLIGFSC-NS-----KESHDKWIEDIKYY   89 (220)
T ss_dssp             SS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHT---TTEEEEEEES-SC-----HHHHHHHHHHHHHH
T ss_pred             CC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEeC-CC-----HHHHHHHHHHHHHH
Confidence            56 7999999998  45555588999766  667799 9999974   4699999996 42     344455543    1


Q ss_pred             --hcCCCeeeecCCCCCchHHHHHHHHhhCcC------------CceEEEEeCCCCceeccc
Q 044391          394 --QAMMPWYTVQHPTIIEPAVVKYAKEVWKFS------------KKAILVPVDPQGRILNQN  441 (691)
Q Consensus       394 --~~~MPWyAVp~~d~i~~~~~r~ike~f~~~------------~iP~LVvL~pqGkv~~~N  441 (691)
                        ...++|..+--++       +.+.+.|++.            ..|..++|||+|++....
T Consensus        90 ~~~~~~~fpil~D~~-------~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~  144 (220)
T 1xcc_A           90 GKLNKWEIPIVCDES-------RELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATV  144 (220)
T ss_dssp             HTCSCCCCCEEECTT-------SHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEE
T ss_pred             hcCCCCcceeEECch-------hHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEE
Confidence              2355554333222       2344557773            379999999999998653

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=97.66  E-value=6e-05  Score=72.01  Aligned_cols=75  Identities=13%  Similarity=0.154  Sum_probs=53.4

Q ss_pred             ecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecC
Q 044391          328 NIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQH  404 (691)
Q Consensus       328 ~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~  404 (691)
                      .++.++||.|+|.|++.||+||.  .+.|. ++++.     .+++++.|.+        |+..+..+.+..         
T Consensus        48 ~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~-----~~v~~~~v~~--------d~~~~~~~~~~~---------  105 (167)
T 1z6n_A           48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQ-----PNIELAIISK--------GRAEDDLRQRLA---------  105 (167)
T ss_dssp             HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHC-----TTEEEEEECH--------HHHHHHTTTTTT---------
T ss_pred             HHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHC-----CCcEEEEEEC--------CCCHHHHHHHHH---------
Confidence            34567899999999999999884  58898 88753     2588888754        433222111110         


Q ss_pred             CCCCchHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          405 PTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       405 ~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                                     -+++++|++++++++|+++.
T Consensus       106 ---------------~~v~~iPt~i~~~~~G~~~~  125 (167)
T 1z6n_A          106 ---------------LERIAIPLVLVLDEEFNLLG  125 (167)
T ss_dssp             ---------------CSSCCSSEEEEECTTCCEEE
T ss_pred             ---------------cCCCCcCeEEEECCCCCEEE
Confidence                           14799999999999999864

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=97.63  E-value=3e-05  Score=71.53  Aligned_cols=89  Identities=13%  Similarity=0.020  Sum_probs=59.5

Q ss_pred             CceeecceecCcEEEEEEe-cCCCChhh--hHHH---H-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcC
Q 044391          324 RTRVNIEVLRRKHVLLLIS-SLDLSDEE--ILVL---H-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAM  396 (691)
Q Consensus       324 ~~kV~Is~L~gK~VlL~fS-al~~~~~e--~~~L---~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~  396 (691)
                      +..+..+..+||.|+|+|. +.||++|.  .+.|   . +.+..    +.+|.+|-|.+ +      +..         .
T Consensus        37 ~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~----~~~~~~v~vd~-~------~~~---------~   96 (154)
T 2ju5_A           37 AEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFA----GVHLHMVEVDF-P------QKN---------H   96 (154)
T ss_dssp             HHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHH----HHHCEEEEEEC-C------SSC---------C
T ss_pred             HHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHh----cCcEEEEEecC-c------ccc---------C
Confidence            3445666788999999999 99998874  3555   4 43333    23466666543 1      111         1


Q ss_pred             CCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          397 MPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       397 MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      +|     ++.   ....+.+.+.|++++.|+++++|++|+++..
T Consensus        97 ~~-----~~~---~~~~~~l~~~~~v~~~Pt~~~~d~~G~~~~~  132 (154)
T 2ju5_A           97 QP-----EEQ---RQKNQELKAQYKVTGFPELVFIDAEGKQLAR  132 (154)
T ss_dssp             CC-----HHH---HHHHHHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred             CC-----hhh---HhhHHHHHHHcCCCCCCEEEEEcCCCCEEEE
Confidence            22     221   1334567788999999999999999999864

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=97.62  E-value=0.00011  Score=64.51  Aligned_cols=74  Identities=11%  Similarity=0.057  Sum_probs=55.4

Q ss_pred             cceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCC
Q 044391          329 IEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHP  405 (691)
Q Consensus       329 Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~  405 (691)
                      ....+||.|+++|.+.||++|.  .+.|. ++++++    .++.++.|.+ |     .|+                    
T Consensus        21 ~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~----~~v~~~~v~~-~-----~d~--------------------   70 (126)
T 2l57_A           21 EEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKERE----GKFNIYYARL-E-----EEK--------------------   70 (126)
T ss_dssp             TTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSS----SSCEEEEEET-T-----SSH--------------------
T ss_pred             HHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhc----CCeEEEEEeC-C-----CCc--------------------
Confidence            3446799999999999998874  35677 777764    4588888863 0     011                    


Q ss_pred             CCCchHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          406 TIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       406 d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                             -..+.+.|++++.|++++++++|+++.
T Consensus        71 -------~~~~~~~~~v~~~Pt~~~~~~~G~~~~   97 (126)
T 2l57_A           71 -------NIDLAYKYDANIVPTTVFLDKEGNKFY   97 (126)
T ss_dssp             -------HHHHHHHTTCCSSSEEEEECTTCCEEE
T ss_pred             -------hHHHHHHcCCcceeEEEEECCCCCEEE
Confidence                   124566799999999999999999864

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=97.62  E-value=0.00018  Score=63.63  Aligned_cols=82  Identities=5%  Similarity=0.018  Sum_probs=60.0

Q ss_pred             eecCCCCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh
Q 044391          318 VVDGSSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ  394 (691)
Q Consensus       318 l~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~  394 (691)
                      -+...++..+.....+||.|+++|.+.||++|.  .+.|. ++++.+.    ++.++.|.+        |+..       
T Consensus        26 ~~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~----~v~~~~vd~--------d~~~-------   86 (128)
T 3ul3_B           26 RLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK----RIYLLKVDL--------DKNE-------   86 (128)
T ss_dssp             CCCCCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG----GEEEEEEEG--------GGCH-------
T ss_pred             ccccCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC----CeEEEEEEC--------CCCH-------
Confidence            333445555666667899999999999998874  36788 8887753    477777754        2221       


Q ss_pred             cCCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          395 AMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       395 ~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                                          .+.+.|++++.|+++++ .+|+.+.
T Consensus        87 --------------------~l~~~~~v~~~Pt~~~~-~~G~~~~  110 (128)
T 3ul3_B           87 --------------------SLARKFSVKSLPTIILL-KNKTMLA  110 (128)
T ss_dssp             --------------------HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             --------------------HHHHHcCCCCcCEEEEE-ECCEEEE
Confidence                                35677999999999999 7898775

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=97.60  E-value=0.00021  Score=67.49  Aligned_cols=102  Identities=10%  Similarity=0.056  Sum_probs=71.0

Q ss_pred             CCCCceeeccee-cCcEEEEEE-ecCCCChh---hhHHHH-HHHHhhccCCCCe-eEEEEecccCCCCCChhhHHHHHHH
Q 044391          321 GSSRTRVNIEVL-RRKHVLLLI-SSLDLSDE---EILVLH-LYREHKAREEFDY-AIVWLPIVDRSIAWDEGYRQKFEQL  393 (691)
Q Consensus       321 g~~~~kV~Is~L-~gK~VlL~f-Sal~~~~~---e~~~L~-iY~~lk~~~~~~f-EIVwIpiVd~s~~W~D~d~~~F~~~  393 (691)
                      ..+++.|+++++ +||.|+|+| -+.|||+|   +++-|+ .|+++++   .++ +||-|+. |     +....++|-+-
T Consensus        17 ~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~---~gv~~vv~Is~-d-----~~~~~~~~~~~   87 (167)
T 2wfc_A           17 ATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHG---KGVDIIACMAV-N-----DSFVMDAWGKA   87 (167)
T ss_dssp             SSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHH---TTCCEEEEEES-S-----CHHHHHHHHHH
T ss_pred             CCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH---CCCCEEEEEeC-C-----CHHHHHHHHHh
Confidence            456778999998 999888877 59999765   567788 9999974   358 9999985 4     23445666553


Q ss_pred             hcCCC--eeeecCCCCCchHHHHHHHHhhCcCC-----------ceEEEEeCCCCceecc
Q 044391          394 QAMMP--WYTVQHPTIIEPAVVKYAKEVWKFSK-----------KAILVPVDPQGRILNQ  440 (691)
Q Consensus       394 ~~~MP--WyAVp~~d~i~~~~~r~ike~f~~~~-----------iP~LVvL~pqGkv~~~  440 (691)
                      . .+|  |-.+.-++   .    .+.+.|++..           .|..+++ ++|+++..
T Consensus        88 ~-~~~~~fp~l~D~~---~----~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~  138 (167)
T 2wfc_A           88 H-GADDKVQMLADPG---G----AFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKV  138 (167)
T ss_dssp             T-TCTTTSEEEECTT---S----HHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEE
T ss_pred             c-CCCcceEEEECCC---C----cHHHHcCCccccccccCcccceEEEEEE-eCCEEEEE
Confidence            3 344  43332222   2    2344577754           3999999 99999876

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=97.51  E-value=0.00014  Score=65.04  Aligned_cols=77  Identities=10%  Similarity=-0.057  Sum_probs=55.4

Q ss_pred             eeecceecCcEEEEEEecCCCChhhh--HHH---H-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCe
Q 044391          326 RVNIEVLRRKHVLLLISSLDLSDEEI--LVL---H-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPW  399 (691)
Q Consensus       326 kV~Is~L~gK~VlL~fSal~~~~~e~--~~L---~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPW  399 (691)
                      +..++..+||.|+|+|.+.||++|..  +.+   . ++++++     ++.++.|.+        |..             
T Consensus        23 ~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-----~~~~~~vd~--------~~~-------------   76 (134)
T 2fwh_A           23 NQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-----DTVLLQANV--------TAN-------------   76 (134)
T ss_dssp             HHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-----TSEEEEEEC--------TTC-------------
T ss_pred             HHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-----CcEEEEEeC--------CCC-------------
Confidence            45566777999999999999998854  334   4 554442     377777764        111             


Q ss_pred             eeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          400 YTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       400 yAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                            +    .....+.+.|++.+.|+++++|++|+++
T Consensus        77 ------~----~~~~~l~~~~~v~~~Pt~~~~d~~G~~v  105 (134)
T 2fwh_A           77 ------D----AQDVALLKHLNVLGLPTILFFDGQGQEH  105 (134)
T ss_dssp             ------C----HHHHHHHHHTTCCSSSEEEEECTTSCBC
T ss_pred             ------c----chHHHHHHHcCCCCCCEEEEECCCCCEe
Confidence                  0    1234566779999999999999999987

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=97.48  E-value=3.8e-05  Score=71.24  Aligned_cols=97  Identities=14%  Similarity=0.094  Sum_probs=57.8

Q ss_pred             eecCcEEEEEEecCCCChhhh---HHH--H-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecC
Q 044391          331 VLRRKHVLLLISSLDLSDEEI---LVL--H-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQH  404 (691)
Q Consensus       331 ~L~gK~VlL~fSal~~~~~e~---~~L--~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~  404 (691)
                      ..+||.|+|.|.+.||++|.-   .+|  . +.+.++.    +|.+|-|.+ |.     +.+............+..++.
T Consensus        44 ~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~----~~~~v~v~~-d~-----~~~~~~~~~~~~~~~~~~~~~  113 (172)
T 3f9u_A           44 RQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN----DYVLITLYV-DN-----KTPLTEPVKIMENGTERTLRT  113 (172)
T ss_dssp             HHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH----HCEEEEEET-TC-----CCEEEEEEEEEETTEEEEEEE
T ss_pred             HHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC----CEEEEEEec-Cc-----ccccchhhhhhhcchhhhhhh
Confidence            356999999999999998853   222  3 4444432    488888765 21     100000011122333333332


Q ss_pred             CCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          405 PTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       405 ~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      ..   ........+.|++.++|+++++|++|+++..
T Consensus       114 ~~---~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~  146 (172)
T 3f9u_A          114 VG---DKWSYLQRVKFGANAQPFYVLIDNEGNPLNK  146 (172)
T ss_dssp             HH---HHHHHHHHHHHSCCCSSEEEEECTTSCBSSC
T ss_pred             hh---hhhhHHHHHHcCCCCcceEEEECCCCCEEee
Confidence            11   1222233578999999999999999999865

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=97.35  E-value=0.00032  Score=70.41  Aligned_cols=108  Identities=13%  Similarity=0.114  Sum_probs=72.2

Q ss_pred             CCCCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH-hc
Q 044391          321 GSSRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL-QA  395 (691)
Q Consensus       321 g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~-~~  395 (691)
                      +.++..|++++++||.|.|||= +.|+|.|  |+.-+. .|++.++   .+.+||-||. |     +......|.+- ..
T Consensus        39 d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~---~g~~vigiS~-D-----s~~sh~aw~~~~~~  109 (216)
T 3sbc_A           39 DGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEE---QGAQVLFAST-D-----SEYSLLAWTNIPRK  109 (216)
T ss_dssp             TTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHH---TTEEEEEEES-S-----CHHHHHHHHTSCGG
T ss_pred             CCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhcc---CCceEEEeec-C-----chhhHHHHHHHHHH
Confidence            3455689999999999999997 5667666  566688 9999984   4699999996 5     25566677542 22


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceec
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILN  439 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~  439 (691)
                      ...-..++||-+.|.  -+.+.+.|++-      ..+...||||+|++..
T Consensus       110 ~~~~~~l~fpllsD~--~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~  157 (216)
T 3sbc_A          110 EGGLGPINIPLLADT--NHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRH  157 (216)
T ss_dssp             GTCCCSCSSCEEECT--TSHHHHHHTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             hCCccCcccceEeCC--CCHHHHHcCCeeccCCceeeEEEEECCCCeEEE
Confidence            222223455422222  22344456662      2488999999998854

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=97.33  E-value=0.00059  Score=68.56  Aligned_cols=108  Identities=14%  Similarity=0.151  Sum_probs=75.0

Q ss_pred             CCCCceeecceecCcEEEEEEec-CCCCh--hhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH-Hhc
Q 044391          321 GSSRTRVNIEVLRRKHVLLLISS-LDLSD--EEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ-LQA  395 (691)
Q Consensus       321 g~~~~kV~Is~L~gK~VlL~fSa-l~~~~--~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~-~~~  395 (691)
                      ..++.+|++++++||.|.|||=- .++|.  .|+.-+. .|++.++   .+.+||-||. |     +-....+|.+ ...
T Consensus        43 d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~---~g~~vigiS~-D-----s~~sh~~w~~~~~~  113 (219)
T 3tue_A           43 NGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNE---LNCEVLACSI-D-----SEYAHLQWTLQDRK  113 (219)
T ss_dssp             TSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHT---TTEEEEEEES-S-----CHHHHHHHHHSCGG
T ss_pred             CCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhcc---CCcEEEEeeC-C-----chhhHHHHhhhhHH
Confidence            34567899999999999999984 44544  4677799 9999984   4799999996 5     3556677753 345


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCc----CCc--eEEEEeCCCCceec
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKF----SKK--AILVPVDPQGRILN  439 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~----~~i--P~LVvL~pqGkv~~  439 (691)
                      ...-+.+|||-+-|.  -+.+.+.|++    .+.  -...||||+|++..
T Consensus       114 ~~~~~~l~fpllsD~--~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~  161 (219)
T 3tue_A          114 KGGLGTMAIPILADK--TKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQ  161 (219)
T ss_dssp             GTCCCSCSSCEEECT--TSHHHHHTTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             hcCccccccccccCc--ccHHHHHcCCcccCCCeeEEEEEEECCCCeEEE
Confidence            555566677533332  2345555666    233  37899999998853

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=97.29  E-value=0.00012  Score=64.79  Aligned_cols=73  Identities=12%  Similarity=0.042  Sum_probs=51.3

Q ss_pred             ecCcEEEEEEecCCCChhhh--HHHH---HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCC
Q 044391          332 LRRKHVLLLISSLDLSDEEI--LVLH---LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPT  406 (691)
Q Consensus       332 L~gK~VlL~fSal~~~~~e~--~~L~---iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d  406 (691)
                      .+||.|+|+|.+.||++|..  +.|.   +.++++    .++.++.|.+        +.                   .+
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~----~~~~~~~vd~--------~~-------------------~~   75 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIA----KHFEVVKIDV--------GN-------------------FD   75 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHH----HHCEEEEEEC--------TT-------------------TT
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhc----CCEEEEEEeC--------Cc-------------------cc
Confidence            35999999999999988853  3333   333332    3588888865        11                   11


Q ss_pred             CCchHHHHHHHHhhCc---CCceEEEEeCCCCceecc
Q 044391          407 IIEPAVVKYAKEVWKF---SKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       407 ~i~~~~~r~ike~f~~---~~iP~LVvL~pqGkv~~~  440 (691)
                           ....+.+.|++   ++.|+++++|++|+++..
T Consensus        76 -----~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~  107 (133)
T 3fk8_A           76 -----RNLELSQAYGDPIQDGIPAVVVVNSDGKVRYT  107 (133)
T ss_dssp             -----SSHHHHHHTTCGGGGCSSEEEEECTTSCEEEE
T ss_pred             -----chHHHHHHhCCccCCccceEEEECCCCCEEEE
Confidence                 11235677999   999999999999998854

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=97.24  E-value=0.0007  Score=60.57  Aligned_cols=67  Identities=10%  Similarity=0.005  Sum_probs=50.1

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .+|.|+++|.+.||++|.-  +.|. ++++++    +++.++-|.+        |++                       
T Consensus        37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~----~~v~~~~vd~--------~~~-----------------------   81 (136)
T 2l5l_A           37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYD----GQIVIYKVDT--------EKE-----------------------   81 (136)
T ss_dssp             CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTT----TTCEEEEEET--------TTC-----------------------
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhc----CCEEEEEEeC--------CCC-----------------------
Confidence            4789999999999988743  5677 777664    3466666643        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                          ..+.+.|++++.|+++++|++|+++
T Consensus        82 ----~~l~~~~~v~~~Pt~~~~~~~G~~~  106 (136)
T 2l5l_A           82 ----QELAGAFGIRSIPSILFIPMEGKPE  106 (136)
T ss_dssp             ----HHHHHHTTCCSSCEEEEECSSSCCE
T ss_pred             ----HHHHHHcCCCCCCEEEEECCCCcEE
Confidence                1345668999999999999999986

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=97.11  E-value=0.00085  Score=57.77  Aligned_cols=67  Identities=15%  Similarity=0.087  Sum_probs=51.3

Q ss_pred             cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .||.|+++|.+.||++|.  .+.|. ++++++    +++.++.|.+        |++                  +    
T Consensus        16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~----~~v~~~~vd~--------~~~------------------~----   61 (112)
T 2voc_A           16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMG----DKLKIVKIDV--------DEN------------------Q----   61 (112)
T ss_dssp             SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHT----TTCEEEEEET--------TTC------------------C----
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhC----CCcEEEEEEC--------CCC------------------H----
Confidence            689999999999998874  36677 887765    2478888764        211                  1    


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                           .+.+.|++++.|+++++ ++|+++.
T Consensus        62 -----~l~~~~~v~~~Pt~~~~-~~G~~~~   85 (112)
T 2voc_A           62 -----ETAGKYGVMSIPTLLVL-KDGEVVE   85 (112)
T ss_dssp             -----SHHHHTTCCSBSEEEEE-ETTEEEE
T ss_pred             -----HHHHHcCCCcccEEEEE-eCCEEEE
Confidence                 14566899999999999 9999874

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=97.06  E-value=0.0019  Score=62.27  Aligned_cols=118  Identities=14%  Similarity=0.028  Sum_probs=74.8

Q ss_pred             CC-ceeecce-ecCcEE-EEEEecCCCChh---hhHHHH-HHHHhhccCCCCee-EEEEecccCCCCCChhhHHHHHHHh
Q 044391          323 SR-TRVNIEV-LRRKHV-LLLISSLDLSDE---EILVLH-LYREHKAREEFDYA-IVWLPIVDRSIAWDEGYRQKFEQLQ  394 (691)
Q Consensus       323 ~~-~kV~Is~-L~gK~V-lL~fSal~~~~~---e~~~L~-iY~~lk~~~~~~fE-IVwIpiVd~s~~W~D~d~~~F~~~~  394 (691)
                      +| +.|++++ ++||.| +++|=+.|||+|   |++-|+ .|++++++   +++ ||-|+. |     +....++|-+-.
T Consensus        43 ~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~---gv~~vv~Is~-d-----~~~~~~~f~~~~  113 (184)
T 3uma_A           43 DGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILAR---GVDDIAVVAV-N-----DLHVMGAWATHS  113 (184)
T ss_dssp             TEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTT---TCCEEEEEES-S-----CHHHHHHHHHHH
T ss_pred             CCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHc---CCCEEEEEEC-C-----CHHHHHHHHHHh
Confidence            55 7899999 899965 555669999776   467799 99999843   588 999986 3     234556675433


Q ss_pred             cCCC--eeeecCCCCCchHHHHHHHHhhCcC-----------CceEEEEeCCCCceecccHHHHHHHhCcccccCChhhH
Q 044391          395 AMMP--WYTVQHPTIIEPAVVKYAKEVWKFS-----------KKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKE  461 (691)
Q Consensus       395 ~~MP--WyAVp~~d~i~~~~~r~ike~f~~~-----------~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~  461 (691)
                       ..|  |--+.-++       ..+.+.|++.           ..|..+|++ +|+++....       |.+.=+++.+..
T Consensus       114 -~~~~~fp~l~D~~-------~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~-------~~~~g~~~~~~~  177 (184)
T 3uma_A          114 -GGMGKIHFLSDWN-------AAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNI-------EESPGQATASGA  177 (184)
T ss_dssp             -TCTTTSEEEECTT-------CHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEE-------CSSTTCCSTTSH
T ss_pred             -CCCCceEEEEcCc-------hHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEE-------eCCCCCCcCCCH
Confidence             233  33332222       2344457774           246777886 999976542       334445665555


Q ss_pred             HHHH
Q 044391          462 AALW  465 (691)
Q Consensus       462 e~L~  465 (691)
                      +++-
T Consensus       178 ~~vL  181 (184)
T 3uma_A          178 AAML  181 (184)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=97.06  E-value=0.0029  Score=60.39  Aligned_cols=103  Identities=16%  Similarity=0.100  Sum_probs=68.3

Q ss_pred             CCCCceeecce-ecCcEEEEEE-ecCCCChhh---hHHHH-HHHHhhccCCCCeeEEE-EecccCCCCCChhhHHHHHHH
Q 044391          321 GSSRTRVNIEV-LRRKHVLLLI-SSLDLSDEE---ILVLH-LYREHKAREEFDYAIVW-LPIVDRSIAWDEGYRQKFEQL  393 (691)
Q Consensus       321 g~~~~kV~Is~-L~gK~VlL~f-Sal~~~~~e---~~~L~-iY~~lk~~~~~~fEIVw-IpiVd~s~~W~D~d~~~F~~~  393 (691)
                      ..+++.|.+++ ++||.|.|+| =+.|||+|.   ++-|. .|+++++   .+++||. ||. |     +....++|-+-
T Consensus        29 ~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~---~gv~vv~~iS~-D-----~~~~~~~f~~~   99 (173)
T 3mng_A           29 GEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKA---KGVQVVACLSV-N-----DAFVTGEWGRA   99 (173)
T ss_dssp             SSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHT---TTCCEEEEEES-S-----CHHHHHHHHHH
T ss_pred             CCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEEcC-C-----CHHHHHHHHHH
Confidence            45677899999 5999666555 599997765   46788 9999984   4699998 885 3     23455667543


Q ss_pred             hcCCC--eeeecCCCCCchHHHHHHHHhhCcC-------------CceEEEEeCCCCceeccc
Q 044391          394 QAMMP--WYTVQHPTIIEPAVVKYAKEVWKFS-------------KKAILVPVDPQGRILNQN  441 (691)
Q Consensus       394 ~~~MP--WyAVp~~d~i~~~~~r~ike~f~~~-------------~iP~LVvL~pqGkv~~~N  441 (691)
                      .. .|  +-.+--++   .    .+.+.|++.             ..|...||| +|++....
T Consensus       100 ~~-~~~~fp~l~D~~---~----~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~  153 (173)
T 3mng_A          100 HK-AEGKVRLLADPT---G----AFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALN  153 (173)
T ss_dssp             TT-CTTTCEEEECTT---C----HHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEE
T ss_pred             hC-CCCceEEEECCC---h----HHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEE
Confidence            32 22  32222222   2    233446654             459999999 99997654

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=97.04  E-value=0.00055  Score=61.54  Aligned_cols=72  Identities=4%  Similarity=0.090  Sum_probs=48.9

Q ss_pred             cceecCcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCC
Q 044391          329 IEVLRRKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTI  407 (691)
Q Consensus       329 Is~L~gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~  407 (691)
                      ++..+||.|+++|.+.||++|..  +. .++++.+.    |.++++.+ |.     |+                      
T Consensus        35 l~~~~~k~vvv~F~a~wC~~C~~--~~p~l~~l~~~----~~v~~~~v-d~-----~~----------------------   80 (133)
T 3cxg_A           35 FSSTQNSSIVIKFGAVWCKPCNK--IKEYFKNQLNY----YYVTLVDI-DV-----DI----------------------   80 (133)
T ss_dssp             HTC-CCSEEEEEEECTTCHHHHH--THHHHHGGGGT----EECEEEEE-ET-----TT----------------------
T ss_pred             HHhcCCCEEEEEEECCCCHHHHH--HHHHHHHHHHh----cCEEEEEE-ec-----cc----------------------
Confidence            44556899999999999998854  24 55555432    56777775 21     11                      


Q ss_pred             CchHHHHHHHHhhCcCCceEEEEe-CCCCc--eec
Q 044391          408 IEPAVVKYAKEVWKFSKKAILVPV-DPQGR--ILN  439 (691)
Q Consensus       408 i~~~~~r~ike~f~~~~iP~LVvL-~pqGk--v~~  439 (691)
                           ...+.+.|++++.|+++++ +++|+  ++.
T Consensus        81 -----~~~l~~~~~v~~~Pt~~~~~~~~g~g~~~~  110 (133)
T 3cxg_A           81 -----HPKLNDQHNIKALPTFEFYFNLNNEWVLVH  110 (133)
T ss_dssp             -----CHHHHHHTTCCSSSEEEEEEEETTEEEEEE
T ss_pred             -----hHHHHHhcCCCCCCEEEEEEecCCCeEEEE
Confidence                 1235567999999999999 56666  553

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=97.03  E-value=0.0013  Score=55.11  Aligned_cols=67  Identities=13%  Similarity=0.081  Sum_probs=49.2

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .||.|+++|.+.||++|.-  +.|. +.++.+    +++.++.|.+        |++                       
T Consensus        16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~----~~v~~~~v~~--------~~~-----------------------   60 (105)
T 1nsw_A           16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA----DKVTVAKLNV--------DEN-----------------------   60 (105)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHST----TTCEEEEEET--------TTC-----------------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCcEEEEEEC--------cCC-----------------------
Confidence            4789999999999988743  5566 666653    3477777754        221                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          +.+.+.|++++.|+++++ ++|+++.
T Consensus        61 ----~~~~~~~~v~~~Pt~~~~-~~G~~~~   85 (105)
T 1nsw_A           61 ----PETTSQFGIMSIPTLILF-KGGRPVK   85 (105)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ----HHHHHHcCCccccEEEEE-eCCeEEE
Confidence                124567899999999999 8999764

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=97.03  E-value=0.0006  Score=59.70  Aligned_cols=76  Identities=7%  Similarity=0.012  Sum_probs=50.3

Q ss_pred             eecceecCcEEEEEEecCCCChhhh--HHH---H-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCee
Q 044391          327 VNIEVLRRKHVLLLISSLDLSDEEI--LVL---H-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWY  400 (691)
Q Consensus       327 V~Is~L~gK~VlL~fSal~~~~~e~--~~L---~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWy  400 (691)
                      +..+..+||.|+++|.+.||++|.-  +.+   . +-+.++    .++.++-|.+        |.               
T Consensus        20 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~vd~--------~~---------------   72 (130)
T 2kuc_A           20 LKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFN----RHFVNLKMDM--------EK---------------   72 (130)
T ss_dssp             HHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHH----HHSEEEEECS--------SS---------------
T ss_pred             HHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHh----cCeEEEEEec--------CC---------------
Confidence            4444568999999999999998853  334   3 333332    2244444321        21               


Q ss_pred             eecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          401 TVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       401 AVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                           +     ....+.+.|++.+.|+++++|++|+++.
T Consensus        73 -----~-----~~~~~~~~~~v~~~Pt~~~~d~~G~~~~  101 (130)
T 2kuc_A           73 -----G-----EGVELRKKYGVHAYPTLLFINSSGEVVY  101 (130)
T ss_dssp             -----T-----THHHHHHHTTCCSSCEEEEECTTSCEEE
T ss_pred             -----c-----chHHHHHHcCCCCCCEEEEECCCCcEEE
Confidence                 1     1234566799999999999999999875

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=97.01  E-value=0.0017  Score=54.22  Aligned_cols=67  Identities=12%  Similarity=0.090  Sum_probs=50.1

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      ++|.++++|.+.||++|..  +.|. ++++.+    +++.++.|.+        |++.                      
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~--------~~~~----------------------   63 (106)
T 3die_A           18 ESGVQLVDFWATACGPCKMIAPVLEELAADYE----GKADILKLDV--------DENP----------------------   63 (106)
T ss_dssp             CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTT----TTCEEEEEET--------TTCH----------------------
T ss_pred             cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhc----CCcEEEEEEC--------CcCH----------------------
Confidence            7999999999999988753  5677 777764    3377777754        2211                      


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                           .+.+.|++++.|+++++. +|+.+.
T Consensus        64 -----~~~~~~~v~~~Pt~~~~~-~G~~~~   87 (106)
T 3die_A           64 -----STAAKYEVMSIPTLIVFK-DGQPVD   87 (106)
T ss_dssp             -----HHHHHTTCCSBSEEEEEE-TTEEEE
T ss_pred             -----HHHHhCCCcccCEEEEEe-CCeEEE
Confidence                 245668999999999995 898764

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.01  E-value=0.0014  Score=57.35  Aligned_cols=70  Identities=4%  Similarity=-0.140  Sum_probs=50.2

Q ss_pred             cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .+|.|+++|.+.||++|.  .+.|. ++++++...+.++.++-|.+        |++                       
T Consensus        24 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~--------~~~-----------------------   72 (133)
T 1x5d_A           24 SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDA--------TVN-----------------------   72 (133)
T ss_dssp             SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEET--------TTC-----------------------
T ss_pred             CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEEC--------CCC-----------------------
Confidence            378999999999998874  36688 88887632234566666643        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                          +.+.+.|++++.|+++++++ |+.+
T Consensus        73 ----~~l~~~~~v~~~Pt~~~~~~-g~~~   96 (133)
T 1x5d_A           73 ----QVLASRYGIRGFPTIKIFQK-GESP   96 (133)
T ss_dssp             ----CHHHHHHTCCSSSEEEEEET-TEEE
T ss_pred             ----HHHHHhCCCCeeCeEEEEeC-CCce
Confidence                13556689999999999998 7754

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=96.97  E-value=0.002  Score=54.54  Aligned_cols=67  Identities=15%  Similarity=0.082  Sum_probs=50.2

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .||.++++|.+.||++|..  +.|. +.++.+    +++.++.|.+        |.+.                      
T Consensus        24 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~~v~~~~v~~--------~~~~----------------------   69 (115)
T 1thx_A           24 AEQPVLVYFWASWCGPCQLMSPLINLAANTYS----DRLKVVKLEI--------DPNP----------------------   69 (115)
T ss_dssp             CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT----TTCEEEEEES--------TTCH----------------------
T ss_pred             CCceEEEEEECCCCHHHHHhHHHHHHHHHHhC----CcEEEEEEEc--------CCCH----------------------
Confidence            4899999999999998853  5566 666653    3488888865        2211                      


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                           .+.+.|++++.|+++++ ++|+++.
T Consensus        70 -----~~~~~~~v~~~Pt~~~~-~~G~~~~   93 (115)
T 1thx_A           70 -----TTVKKYKVEGVPALRLV-KGEQILD   93 (115)
T ss_dssp             -----HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -----HHHHHcCCCceeEEEEE-cCCEEEE
Confidence                 25567899999999999 8999875

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=96.96  E-value=0.0017  Score=55.38  Aligned_cols=67  Identities=13%  Similarity=0.190  Sum_probs=47.3

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      ||.|+++|.+.||++|.-  +.|. ++++++.   .++.++.|.+        |++                        
T Consensus        21 ~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~~vd~--------~~~------------------------   65 (112)
T 3d6i_A           21 DKLIVLYFHTSWAEPCKALKQVFEAISNEPSN---SNVSFLSIDA--------DEN------------------------   65 (112)
T ss_dssp             TCCEEEEEECCC--CHHHHHHHHHHHHHCGGG---TTSEEEEEET--------TTC------------------------
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHhcCC---CCEEEEEEec--------ccC------------------------
Confidence            789999999999988743  5677 7776542   3477776654        211                        


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                         ..+.+.|++++.|+++++ .+|+++.
T Consensus        66 ---~~~~~~~~v~~~Pt~~~~-~~G~~~~   90 (112)
T 3d6i_A           66 ---SEISELFEISAVPYFIII-HKGTILK   90 (112)
T ss_dssp             ---HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ---HHHHHHcCCCcccEEEEE-ECCEEEE
Confidence               135567999999999998 6999875

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=96.95  E-value=0.0015  Score=55.02  Aligned_cols=67  Identities=12%  Similarity=0.089  Sum_probs=48.8

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .||.|+++|.+.||++|.-  +.|. +.++.+    .++.++-|.+        |.+                  +    
T Consensus        19 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~v~~--------~~~------------------~----   64 (108)
T 2trx_A           19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNI--------DQN------------------P----   64 (108)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTEEEEEEET--------TTC------------------T----
T ss_pred             cCCeEEEEEECCCCHhHHHHHHHHHHHHHHhC----CCcEEEEEEC--------CCC------------------H----
Confidence            4799999999999988743  5677 776654    3466666654        211                  1    


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                           .+.+.|++++.|+++++ ++|+++.
T Consensus        65 -----~~~~~~~v~~~Pt~~~~-~~G~~~~   88 (108)
T 2trx_A           65 -----GTAPKYGIRGIPTLLLF-KNGEVAA   88 (108)
T ss_dssp             -----THHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -----HHHHHcCCcccCEEEEE-eCCEEEE
Confidence                 14466899999999999 8999864

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=96.91  E-value=0.0024  Score=53.25  Aligned_cols=67  Identities=9%  Similarity=0.072  Sum_probs=49.2

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .+|.++++|.+.||++|.-  +.|. +.++++    +++.++.|.+        |.+                       
T Consensus        17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~v~~--------~~~-----------------------   61 (109)
T 2yzu_A           17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYE----GKLLVAKLDV--------DEN-----------------------   61 (109)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTB----TTBEEEEEET--------TTC-----------------------
T ss_pred             CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhh----CceEEEEEEC--------CCC-----------------------
Confidence            4799999999999988753  5577 766654    3477766654        221                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          ..+.+.|++.+.|+++++ ++|+++.
T Consensus        62 ----~~~~~~~~v~~~Pt~~~~-~~g~~~~   86 (109)
T 2yzu_A           62 ----PKTAMRYRVMSIPTVILF-KDGQPVE   86 (109)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ----HhHHHhCCCCcCCEEEEE-eCCcEee
Confidence                125567899999999999 8999874

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=96.89  E-value=0.0028  Score=53.26  Aligned_cols=66  Identities=14%  Similarity=0.016  Sum_probs=48.4

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      ||.++++|.+.||++|.-  +.|. ++++.+    +++.++.|.+        |++                        
T Consensus        19 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~v~~--------~~~------------------------   62 (107)
T 1dby_A           19 SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK----DKLKCVKLNT--------DES------------------------   62 (107)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEET--------TTC------------------------
T ss_pred             CCcEEEEEECCCCHhHHHHHHHHHHHHHHhC----CceEEEEEEC--------CCC------------------------
Confidence            789999999999988753  5677 777654    3477777654        211                        


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                         +.+.+.|++++.|+++++ ++|+.+.
T Consensus        63 ---~~~~~~~~v~~~Pt~~~~-~~G~~~~   87 (107)
T 1dby_A           63 ---PNVASEYGIRSIPTIMVF-KGGKKCE   87 (107)
T ss_dssp             ---HHHHHHHTCCSSCEEEEE-SSSSEEE
T ss_pred             ---HHHHHHCCCCcCCEEEEE-eCCEEEE
Confidence               134566899999999888 7998864

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=96.87  E-value=0.0023  Score=53.51  Aligned_cols=67  Identities=13%  Similarity=0.152  Sum_probs=49.6

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .+|.|+++|.+.||++|..  +.|. +.++.+    +++.++.|.+        |.+                  +    
T Consensus        19 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~--------~~~------------------~----   64 (107)
T 2i4a_A           19 ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFA----GKVTVAKVNI--------DDN------------------P----   64 (107)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHHT----TSEEEEEEET--------TTC------------------C----
T ss_pred             CCCEEEEEEECCCChhHHHHhHHHHHHHHHhC----CcEEEEEEEC--------CCC------------------H----
Confidence            4799999999999988753  5577 777664    3477777754        211                  0    


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                           .+.+.|++++.|+++++ ++|+.+.
T Consensus        65 -----~~~~~~~v~~~Pt~~~~-~~G~~~~   88 (107)
T 2i4a_A           65 -----ETPNAYQVRSIPTLMLV-RDGKVID   88 (107)
T ss_dssp             -----HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -----HHHHhcCCCccCEEEEE-eCCEEEE
Confidence                 24566899999999999 9999864

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=96.85  E-value=0.0022  Score=53.47  Aligned_cols=68  Identities=12%  Similarity=0.047  Sum_probs=48.7

Q ss_pred             ecCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391          332 LRRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII  408 (691)
Q Consensus       332 L~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i  408 (691)
                      .+||.++++|.+.||++|.-  +.|. +.++.+    .++.++.|.+        |+.                      
T Consensus        18 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~v~~--------~~~----------------------   63 (106)
T 1xwb_A           18 ASGKLVVLDFFATWCGPCKMISPKLVELSTQFA----DNVVVLKVDV--------DEC----------------------   63 (106)
T ss_dssp             HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTEEEEEEET--------TTC----------------------
T ss_pred             cCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhC----CCeEEEEEec--------cch----------------------
Confidence            36899999999999988753  5566 666653    4577777654        211                      


Q ss_pred             chHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          409 EPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                           ..+.+.|++++.|+++++ ++|+++.
T Consensus        64 -----~~~~~~~~v~~~Pt~~~~-~~G~~~~   88 (106)
T 1xwb_A           64 -----EDIAMEYNISSMPTFVFL-KNGVKVE   88 (106)
T ss_dssp             -----HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -----HHHHHHcCCCcccEEEEE-cCCcEEE
Confidence                 124566899999998777 7898764

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=96.85  E-value=0.0023  Score=54.30  Aligned_cols=67  Identities=16%  Similarity=0.014  Sum_probs=49.2

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .||.|+++|.+.||++|.-  +.|. ++++.+    +++.++.|.+        |.+                       
T Consensus        22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~v~~--------~~~-----------------------   66 (112)
T 1t00_A           22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG----DKIEIVKLNI--------DEN-----------------------   66 (112)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEET--------TTC-----------------------
T ss_pred             CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhc----CCeEEEEEEc--------CCC-----------------------
Confidence            3789999999999988743  5677 777654    3477777754        221                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          +.+.+.|++++.|+++++ ++|+++.
T Consensus        67 ----~~~~~~~~v~~~Pt~~~~-~~G~~~~   91 (112)
T 1t00_A           67 ----PGTAAKYGVMSIPTLNVY-QGGEVAK   91 (112)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ----HHHHHhCCCCcccEEEEE-eCCEEEE
Confidence                124567899999999888 7998863

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.83  E-value=0.002  Score=64.35  Aligned_cols=67  Identities=10%  Similarity=0.066  Sum_probs=51.7

Q ss_pred             cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+++|.+.||++|.  .+.|. ++++.+    +++.++.|.+        |+..                      
T Consensus        25 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~~vd~--------~~~~----------------------   70 (287)
T 3qou_A           25 MTTPVLFYFWSERSQHCLQLTPILESLAAQYN----GQFILAKLDC--------DAEQ----------------------   70 (287)
T ss_dssp             TTSCEEEEEECTTCTTTTTTHHHHHHHHHHHT----SSSEEEEEET--------TTCH----------------------
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHcC----CCeEEEEEeC--------ccCH----------------------
Confidence            389999999999998874  47788 888775    3477777754        2211                      


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                           .+.+.|+++++|+++++ .+|+++.
T Consensus        71 -----~~~~~~~v~~~Pt~~~~-~~G~~~~   94 (287)
T 3qou_A           71 -----MIAAQFGLRAIPTVYLF-QNGQPVD   94 (287)
T ss_dssp             -----HHHHTTTCCSSSEEEEE-ETTEEEE
T ss_pred             -----HHHHHcCCCCCCeEEEE-ECCEEEE
Confidence                 45677999999999999 6898774

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=96.79  E-value=0.00038  Score=65.17  Aligned_cols=101  Identities=9%  Similarity=0.060  Sum_probs=61.6

Q ss_pred             eecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeec
Q 044391          327 VNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQ  403 (691)
Q Consensus       327 V~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp  403 (691)
                      +.....+||.|+|+|.+.||++|.  .+.|. +.+..+.    +.+++.|.+        |.+.+.              
T Consensus        39 ~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~----~~~~~~v~~--------d~~~~~--------------   92 (164)
T 1sen_A           39 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISEL----SHNFVMVNL--------EDEEEP--------------   92 (164)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH----HTTSEEEEE--------EGGGSC--------------
T ss_pred             HHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhc----CCeEEEEEe--------cCCchH--------------
Confidence            334456799999999999998874  36676 6544332    256777765        211110              


Q ss_pred             CCCCCchHHHHHHHHhhCc--CCceEEEEeCCCCceecccHHHHHHHhCcccccCChhhHHHHHhhhc
Q 044391          404 HPTIIEPAVVKYAKEVWKF--SKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAES  469 (691)
Q Consensus       404 ~~d~i~~~~~r~ike~f~~--~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~e~L~~~e~  469 (691)
                                  +.+.|++  ++.|+++++|++|+++..    ++-..|...|.|.....++|.+.-+
T Consensus        93 ------------~~~~~~~~~~~~Pt~~~~d~~G~~~~~----~~G~~~~~~~~~~~~~~~~l~~~l~  144 (164)
T 1sen_A           93 ------------KDEDFSPDGGYIPRILFLDPSGKVHPE----IINENGNPSYKYFYVSAEQVVQGMK  144 (164)
T ss_dssp             ------------SCGGGCTTCSCSSEEEEECTTSCBCTT----CCCTTSCTTSTTCCCSHHHHHHHHH
T ss_pred             ------------HHHHhcccCCcCCeEEEECCCCCEEEE----EeCCCCccchhcccCCHHHHHHHHH
Confidence                        0123456  569999999999999854    1222344455554445555554433

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=96.79  E-value=0.0028  Score=55.21  Aligned_cols=67  Identities=9%  Similarity=0.083  Sum_probs=49.7

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .||.|+|+|.+.||++|..  +.|. ++++++    .++.++.|.+        |++                       
T Consensus        30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~----~~v~~~~vd~--------d~~-----------------------   74 (119)
T 1w4v_A           30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQH----GKVVMAKVDI--------DDH-----------------------   74 (119)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TSSEEEEEET--------TTT-----------------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCeEEEEEeC--------CCC-----------------------
Confidence            4789999999999988753  5577 776653    3577777754        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          ..+.+.|++++.|+++++ ++|+++.
T Consensus        75 ----~~l~~~~~v~~~Pt~~~~-~~G~~~~   99 (119)
T 1w4v_A           75 ----TDLAIEYEVSAVPTVLAM-KNGDVVD   99 (119)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ----HHHHHHcCCCcccEEEEE-eCCcEEE
Confidence                135567999999999999 8999864

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=96.78  E-value=0.0042  Score=58.48  Aligned_cols=100  Identities=9%  Similarity=0.050  Sum_probs=64.6

Q ss_pred             ceeeccee-cCc-EEEEEEecCCCChh--h-hHHHH-HHHHhhccCCCCee-EEEEecccCCCCCChhhHHHHHHHhcC-
Q 044391          325 TRVNIEVL-RRK-HVLLLISSLDLSDE--E-ILVLH-LYREHKAREEFDYA-IVWLPIVDRSIAWDEGYRQKFEQLQAM-  396 (691)
Q Consensus       325 ~kV~Is~L-~gK-~VlL~fSal~~~~~--e-~~~L~-iY~~lk~~~~~~fE-IVwIpiVd~s~~W~D~d~~~F~~~~~~-  396 (691)
                      +.|.++++ +|| .|+++|=+.|||+|  | ++-|. .|++++++   +++ ||-|+. |     +....++|-+-..- 
T Consensus        33 ~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~---g~~~vv~Is~-d-----~~~~~~~~~~~~~~~  103 (171)
T 2pwj_A           33 STTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAK---GVDSVICVAI-N-----DPYTVNAWAEKIQAK  103 (171)
T ss_dssp             CCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHT---TCSEEEEEES-S-----CHHHHHHHHHHTTCT
T ss_pred             ceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHC---CCCEEEEEeC-C-----CHHHHHHHHHHhCCC
Confidence            78999996 996 66778899999887  5 77799 99999743   588 999986 3     23445667654431 


Q ss_pred             CCeeeecCCCCCchHHHHHHHHhhCcCC-----------ceEEEEeCCCCceeccc
Q 044391          397 MPWYTVQHPTIIEPAVVKYAKEVWKFSK-----------KAILVPVDPQGRILNQN  441 (691)
Q Consensus       397 MPWyAVp~~d~i~~~~~r~ike~f~~~~-----------iP~LVvL~pqGkv~~~N  441 (691)
                      .|+..+--++   .+..    +.|++..           .|.-++++ +|++....
T Consensus       104 ~~fp~l~D~~---~~~~----~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~  151 (171)
T 2pwj_A          104 DAIEFYGDFD---GSFH----KSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALN  151 (171)
T ss_dssp             TTSEEEECTT---CHHH----HHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEE
T ss_pred             CceEEEECCc---cHHH----HHhCCccccccccCCcccceeEEEEE-CCEEEEEE
Confidence            1222222221   2333    3456642           45566667 99998653

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=95.81  E-value=0.00021  Score=62.80  Aligned_cols=75  Identities=9%  Similarity=0.115  Sum_probs=50.7

Q ss_pred             eeecceecCcEEEEEEecCCCChhhh--HHH---H-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCe
Q 044391          326 RVNIEVLRRKHVLLLISSLDLSDEEI--LVL---H-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPW  399 (691)
Q Consensus       326 kV~Is~L~gK~VlL~fSal~~~~~e~--~~L---~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPW  399 (691)
                      .+.....+||.|+++|.+.||++|..  +.|   . +.+.+    +.++.++-|.+        |.++            
T Consensus        11 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~----~~~~~~~~vd~--------~~~~------------   66 (130)
T 2lst_A           11 ALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLL----EARFVVASVSV--------DTPE------------   66 (130)
Confidence            45566678999999999999988853  444   4 44433    33466665543        1110            


Q ss_pred             eeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCC-Cce
Q 044391          400 YTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQ-GRI  437 (691)
Q Consensus       400 yAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pq-Gkv  437 (691)
                                   ...+.+.|++++.|+++++||+ |++
T Consensus        67 -------------~~~~~~~~~v~~~Pt~~~~d~~~G~~   92 (130)
T 2lst_A           67 -------------GQELARRYRVPGTPTFVFLVPKAGAW   92 (130)
Confidence                         1234566899999999999985 776

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=96.77  E-value=0.0035  Score=51.65  Aligned_cols=66  Identities=6%  Similarity=-0.055  Sum_probs=48.2

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+++|.+.||++|.-  +.|. +.++++    + +.++.|.+        |.+                       
T Consensus        15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~----~-~~~~~v~~--------~~~-----------------------   58 (104)
T 2e0q_A           15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYP----Q-VGFGKLNS--------DEN-----------------------   58 (104)
T ss_dssp             HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----T-SEEEEEET--------TTC-----------------------
T ss_pred             cCCcEEEEEECCCChhHHHHhHHHHHHHHHcC----C-ceEEEEEC--------CCC-----------------------
Confidence            5899999999999988753  4566 665542    2 77777754        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          ..+.+.|++++.|+++++ ++|+.+.
T Consensus        59 ----~~~~~~~~v~~~Pt~~~~-~~g~~~~   83 (104)
T 2e0q_A           59 ----PDIAARYGVMSLPTVIFF-KDGEPVD   83 (104)
T ss_dssp             ----HHHHHHTTCCSSCEEEEE-ETTEEEE
T ss_pred             ----HHHHHhCCccccCEEEEE-ECCeEhh
Confidence                125566899999999999 8999864

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=96.76  E-value=0.0051  Score=52.92  Aligned_cols=68  Identities=13%  Similarity=0.111  Sum_probs=47.2

Q ss_pred             cCcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchH
Q 044391          333 RRKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPA  411 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~  411 (691)
                      .+|.++++|.+.||++|..  +. .++++.+. -.++.++.|.+        |+.                         
T Consensus        18 ~~~~~vv~f~a~wC~~C~~--~~~~l~~~~~~-~~~v~~~~vd~--------~~~-------------------------   61 (110)
T 2l6c_A           18 GLSDAIVFFHKNLCPHCKN--MEKVLDKFGAR-APQVAISSVDS--------EAR-------------------------   61 (110)
T ss_dssp             TCSEEEEEEECSSCSTHHH--HHHHHHHHHTT-CTTSCEEEEEG--------GGC-------------------------
T ss_pred             cCCCEEEEEECCCCHhHHH--HHHHHHHHHHH-CCCcEEEEEcC--------cCC-------------------------
Confidence            4789999999999999854  22 34444333 23566776653        221                         


Q ss_pred             HHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          412 VVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       412 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                        ..+.+.|++++.|+++++ ++|+.+.
T Consensus        62 --~~l~~~~~v~~~Pt~~~~-~~G~~v~   86 (110)
T 2l6c_A           62 --PELMKELGFERVPTLVFI-RDGKVAK   86 (110)
T ss_dssp             --HHHHHHTTCCSSCEEEEE-ESSSEEE
T ss_pred             --HHHHHHcCCcccCEEEEE-ECCEEEE
Confidence              125567899999999999 8999875

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=96.76  E-value=0.0031  Score=53.13  Aligned_cols=66  Identities=12%  Similarity=0.128  Sum_probs=48.6

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .+|.|+++|.+.||++|..  +.|. +.++.+    +++.++.|.+        |+..                      
T Consensus        21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~----~~v~~~~vd~--------~~~~----------------------   66 (111)
T 3gnj_A           21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYE----ESFGFYYVDV--------EEEK----------------------   66 (111)
T ss_dssp             SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTT----TTSEEEEEET--------TTCH----------------------
T ss_pred             cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcC----CceEEEEEEC--------CcCh----------------------
Confidence            3789999999999988753  5566 666643    3577777764        2111                      


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                           .+.+.|++++.|+++++ .+|+.+
T Consensus        67 -----~l~~~~~v~~~Pt~~~~-~~g~~~   89 (111)
T 3gnj_A           67 -----TLFQRFSLKGVPQILYF-KDGEYK   89 (111)
T ss_dssp             -----HHHHHTTCCSSCEEEEE-ETTEEE
T ss_pred             -----hHHHhcCCCcCCEEEEE-ECCEEE
Confidence                 35567899999999999 788876

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.75  E-value=0.0021  Score=56.11  Aligned_cols=67  Identities=4%  Similarity=-0.060  Sum_probs=48.6

Q ss_pred             ecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391          332 LRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII  408 (691)
Q Consensus       332 L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i  408 (691)
                      ++++ |+++|.+.||++|.  .+.|. ++++++.   .++.++-|.+        |++                      
T Consensus        21 ~~~~-vlv~f~a~wC~~C~~~~p~~~~~~~~~~~---~~v~~~~vd~--------~~~----------------------   66 (126)
T 1x5e_A           21 LEGD-WMIEFYAPWCPACQNLQPEWESFAEWGED---LEVNIAKVDV--------TEQ----------------------   66 (126)
T ss_dssp             TSSE-EEEEEECSSCHHHHHHHHHHHHHHHHHGG---GTCEEEEEET--------TTC----------------------
T ss_pred             hCCC-EEEEEECCCCHHHHHHhHHHHHHHHHhcc---CCeEEEEEEC--------cCC----------------------
Confidence            4454 99999999998874  36788 8887653   3477777654        211                      


Q ss_pred             chHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          409 EPAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                           +.+.+.|++++.|+++++ ++|++.
T Consensus        67 -----~~~~~~~~v~~~Pt~~~~-~~G~~~   90 (126)
T 1x5e_A           67 -----PGLSGRFIINALPTIYHC-KDGEFR   90 (126)
T ss_dssp             -----HHHHHHTTCCSSSEEEEE-ETTEEE
T ss_pred             -----HHHHHHcCCcccCEEEEE-eCCeEE
Confidence                 125667999999999999 899853

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=96.75  E-value=0.0036  Score=52.29  Aligned_cols=67  Identities=9%  Similarity=0.033  Sum_probs=48.9

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+++|.+.||++|.-  +.|. +.++.+    +++.++-|.+        |+..                      
T Consensus        20 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~--------~~~~----------------------   65 (109)
T 3tco_A           20 NNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYK----GKAVFGRLNV--------DENQ----------------------   65 (109)
T ss_dssp             HSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTSEEEEEET--------TTCH----------------------
T ss_pred             cCCeEEEEEECCCCHHHHhhhHHHHHHHHHhC----CCceEEEEcc--------ccCH----------------------
Confidence            4899999999999988753  5677 777654    3466666543        2111                      


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                           .+.+.|++++.|+++++ ++|+.+.
T Consensus        66 -----~~~~~~~i~~~Pt~~~~-~~g~~~~   89 (109)
T 3tco_A           66 -----KIADKYSVLNIPTTLIF-VNGQLVD   89 (109)
T ss_dssp             -----HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -----HHHHhcCcccCCEEEEE-cCCcEEE
Confidence                 24566899999999999 9998775

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=96.74  E-value=0.002  Score=54.14  Aligned_cols=71  Identities=7%  Similarity=-0.031  Sum_probs=46.7

Q ss_pred             ecCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391          332 LRRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII  408 (691)
Q Consensus       332 L~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i  408 (691)
                      +.+|.++++|.+.||++|..  +.|. +.++.+.. ..++.++-|.+        |+..                     
T Consensus        19 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~~vd~--------~~~~---------------------   68 (111)
T 3uvt_A           19 IAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPG-LAGVKIAEVDC--------TAER---------------------   68 (111)
T ss_dssp             HHSSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC--CCEEEEEEET--------TTCH---------------------
T ss_pred             hcCCcEEEEEECCCChhHHHhhHHHHHHHHHhhcc-CCceEEEEEec--------cccH---------------------
Confidence            34899999999999988753  4455 55444322 23455555543        2111                     


Q ss_pred             chHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          409 EPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                            .+.+.|++++.|+++++ ++|+.+.
T Consensus        69 ------~l~~~~~v~~~Pt~~~~-~~g~~~~   92 (111)
T 3uvt_A           69 ------NICSKYSVRGYPTLLLF-RGGKKVS   92 (111)
T ss_dssp             ------HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ------hHHHhcCCCcccEEEEE-eCCcEEE
Confidence                  25667899999999998 7887753

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=96.73  E-value=0.0071  Score=60.87  Aligned_cols=104  Identities=5%  Similarity=0.048  Sum_probs=65.9

Q ss_pred             cCCCCceeecceecCcEEEEEEecCC-CChhhh-HH---HHHHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh
Q 044391          320 DGSSRTRVNIEVLRRKHVLLLISSLD-LSDEEI-LV---LHLYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ  394 (691)
Q Consensus       320 ~g~~~~kV~Is~L~gK~VlL~fSal~-~~~~e~-~~---L~iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~  394 (691)
                      ...++..|++++++||.|+|+|=..| ||+|.. -+   +.-|+++   . .+++||-||. |     +....++|-+-.
T Consensus        34 ~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~-~gv~VvgIS~-D-----s~~~~~~f~~~~  103 (224)
T 3keb_A           34 VDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W-PHLKLIVITV-D-----SPSSLARARHEH  103 (224)
T ss_dssp             EETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C-TTSEEEEEES-S-----CHHHHHHHHHHH
T ss_pred             ECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c-CCCEEEEEEC-C-----CHHHHHHHHHHc
Confidence            34567789999999999999998777 666761 11   1223332   1 4589999995 4     244566776544


Q ss_pred             c--CCCeeeecCCCCCchHHHHHHHHhhCcCC---------ceEEEEeCCCCceeccc
Q 044391          395 A--MMPWYTVQHPTIIEPAVVKYAKEVWKFSK---------KAILVPVDPQGRILNQN  441 (691)
Q Consensus       395 ~--~MPWyAVp~~d~i~~~~~r~ike~f~~~~---------iP~LVvL~pqGkv~~~N  441 (691)
                      .  .+|-++=+- +       ..+.+.|++..         .|..+|||++|++....
T Consensus       104 gl~~fplLsD~~-~-------~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~  153 (224)
T 3keb_A          104 GLPNIALLSTLR-G-------RDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSE  153 (224)
T ss_dssp             CCTTCEEEESTT-C-------TTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEE
T ss_pred             CCCCceEEEcCC-c-------hHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEE
Confidence            3  233332211 1       12334477753         79999999999998644

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.73  E-value=0.0031  Score=55.84  Aligned_cols=69  Identities=10%  Similarity=0.038  Sum_probs=50.0

Q ss_pred             cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .+|.|+++|.+.||++|.  .+.|. ++++++.+ +.++.++-|-+        +++                       
T Consensus        33 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~v~~~~vd~--------~~~-----------------------   80 (140)
T 2dj1_A           33 DKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDN-DPPIAVAKIDA--------TSA-----------------------   80 (140)
T ss_dssp             TCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSS-SSCCEEEEECT--------TTC-----------------------
T ss_pred             cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhcc-CCceEEEEEeC--------ccc-----------------------
Confidence            489999999999998874  46788 99888744 33455555422        110                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                          ..+.+.|++++.|+++++ .+|++.
T Consensus        81 ----~~~~~~~~v~~~Pt~~~~-~~G~~~  104 (140)
T 2dj1_A           81 ----SMLASKFDVSGYPTIKIL-KKGQAV  104 (140)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEE
T ss_pred             ----HHHHHHCCCCccCeEEEE-ECCcEE
Confidence                235667999999999999 789843

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=96.70  E-value=0.0036  Score=54.52  Aligned_cols=66  Identities=9%  Similarity=0.088  Sum_probs=46.7

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+++|.+.||++|.-  +.|. ++++.+     ++.++-|.+        |+.                       
T Consensus        30 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-----~v~~~~vd~--------d~~-----------------------   73 (116)
T 3qfa_C           30 GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS-----NVIFLEVDV--------DDC-----------------------   73 (116)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHTTCT-----TSEEEEEET--------TTT-----------------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----CCEEEEEEC--------CCC-----------------------
Confidence            6899999999999988753  4455 554432     266666543        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          ..+.+.|++++.|+++++ .+|+.+.
T Consensus        74 ----~~l~~~~~v~~~Pt~~~~-~~G~~~~   98 (116)
T 3qfa_C           74 ----QDVASECEVKSMPTFQFF-KKGQKVG   98 (116)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-SSSSEEE
T ss_pred             ----HHHHHHcCCccccEEEEE-eCCeEEE
Confidence                135567899999999999 7898764

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=96.69  E-value=0.0035  Score=53.01  Aligned_cols=66  Identities=2%  Similarity=-0.097  Sum_probs=47.7

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+++|.+.||++|..  +.|. +.++.     .++.++.|.+        |+.                       
T Consensus        20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~-----~~~~~~~vd~--------~~~-----------------------   63 (107)
T 1gh2_A           20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY-----PQAVFLEVDV--------HQC-----------------------   63 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHC-----TTSEEEEEET--------TTS-----------------------
T ss_pred             CCCEEEEEEECCCChhhHHHHHHHHHHHHHC-----CCcEEEEEEC--------ccC-----------------------
Confidence            4899999999999988743  5566 66554     2466666654        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          +.+.+.|++++.|+++++ .+|+.+.
T Consensus        64 ----~~~~~~~~v~~~Pt~~~~-~~G~~~~   88 (107)
T 1gh2_A           64 ----QGTAATNNISATPTFQFF-RNKVRID   88 (107)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ----HHHHHhcCCCcccEEEEE-ECCeEEE
Confidence                225567899999999999 7898764

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=96.69  E-value=0.0038  Score=54.43  Aligned_cols=66  Identities=8%  Similarity=0.056  Sum_probs=47.7

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+++|.+.||++|..  +.|. ++++.+   +  +.++.|.+        |++                       
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~---~--v~~~~vd~--------~~~-----------------------   72 (114)
T 2oe3_A           29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP---D--VRFVKCDV--------DES-----------------------   72 (114)
T ss_dssp             HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCT---T--SEEEEEET--------TTC-----------------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---C--CEEEEEEC--------CCC-----------------------
Confidence            4899999999999988753  5677 766643   2  66666653        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          ..+.+.|++++.|+++++ ++|+++.
T Consensus        73 ----~~l~~~~~v~~~Pt~~~~-~~G~~~~   97 (114)
T 2oe3_A           73 ----PDIAKECEVTAMPTFVLG-KDGQLIG   97 (114)
T ss_dssp             ----HHHHHHTTCCSBSEEEEE-ETTEEEE
T ss_pred             ----HHHHHHCCCCcccEEEEE-eCCeEEE
Confidence                125567899999999887 8999864

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=96.67  E-value=0.031  Score=53.50  Aligned_cols=151  Identities=9%  Similarity=-0.019  Sum_probs=80.6

Q ss_pred             ecCcEEEEEEecC-CCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          332 LRRKHVLLLISSL-DLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       332 L~gK~VlL~fSal-~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      ++++.++++|++. ||++|.  .+. +++++.+. .+++.++.|-+        |.  .                     
T Consensus        20 ~~~~v~lv~f~~~~~C~~C~--~~~~~~~~la~~-~~~v~~~~vd~--------~~--~---------------------   65 (226)
T 1a8l_A           20 MVNPVKLIVFVRKDHCQYCD--QLKQLVQELSEL-TDKLSYEIVDF--------DT--P---------------------   65 (226)
T ss_dssp             CCSCEEEEEEECSSSCTTHH--HHHHHHHHHHTT-CTTEEEEEEET--------TS--H---------------------
T ss_pred             cCCCeEEEEEecCCCCchhH--HHHHHHHHHHhh-CCceEEEEEeC--------CC--c---------------------
Confidence            4567889999999 999874  345 66666543 45566666532        11  0                     


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCcccccCChhhHHHHHhhhccchhhhcccCchhh-hhhhc
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDIDATI-LEWMK  488 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~e~L~~~e~w~lelLvd~id~~I-~~~i~  488 (691)
                        .-+.+.+.|++++.|+++++ .+|+....      .-.|.   |- .....++-.... ....-...++... ....+
T Consensus        66 --~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~------~~~G~---~~-~~~l~~~l~~~l-~~~~~~~~l~~~~~~~~~~  131 (226)
T 1a8l_A           66 --EGKELAKRYRIDRAPATTIT-QDGKDFGV------RYFGL---PA-GHEFAAFLEDIV-DVSREETNLMDETKQAIRN  131 (226)
T ss_dssp             --HHHHHHHHTTCCSSSEEEEE-ETTBCCSE------EEESC---CC-TTHHHHHHHHHH-HHHHTCCCCCHHHHHHHTT
T ss_pred             --ccHHHHHHcCCCcCceEEEE-cCCceeeE------EEecc---Cc-HHHHHHHHHHHH-hhcCCCCCCCHHHHHHHHh
Confidence              11235567899999999999 34542110      00121   11 111111110000 0000000123322 22233


Q ss_pred             -CCcEEEEEccCCh-hHHHHHHHHHHHHHHHhC----CceeeEEeccc
Q 044391          489 -EERYICLYGGGDI-EWIRRFTTSAKAVARAAQ----INLGMAYVGKN  530 (691)
Q Consensus       489 -egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~----~~~E~v~Vgkd  530 (691)
                       .++.++++|.+.+ ..|+++.+.+.++++...    ..+.++.|.-+
T Consensus       132 ~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~  179 (226)
T 1a8l_A          132 IDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAI  179 (226)
T ss_dssp             CCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGG
T ss_pred             cCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcc
Confidence             3455488888833 334999999999977643    46777777655

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=96.67  E-value=0.0031  Score=55.16  Aligned_cols=69  Identities=13%  Similarity=0.123  Sum_probs=45.5

Q ss_pred             cCcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchH
Q 044391          333 RRKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPA  411 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~  411 (691)
                      .+|.|++.|.|.||++|..  +. .++++.+. -.+  ++|+-+ |-     |+.                         
T Consensus        19 ~~k~vvv~F~a~wC~~C~~--~~p~~~~~~~~-~~~--~~~~~v-d~-----d~~-------------------------   62 (105)
T 3zzx_A           19 GNKLVVIDFYATWCGPCKM--IAPKLEELSQS-MSD--VVFLKV-DV-----DEC-------------------------   62 (105)
T ss_dssp             TTSEEEEEEECTTCHHHHH--HHHHHHHHHHH-CTT--EEEEEE-ET-----TTC-------------------------
T ss_pred             CCCEEEEEEECCCCCCccC--CCcchhhhhhc-cCC--eEEEEE-ec-----ccC-------------------------
Confidence            3789999999999999853  33 44444333 223  555554 21     211                         


Q ss_pred             HHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          412 VVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       412 ~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                        ..|.+.|++++.|+++++ .+|+.+..
T Consensus        63 --~~l~~~~~V~~~PT~~~~-~~G~~v~~   88 (105)
T 3zzx_A           63 --EDIAQDNQIACMPTFLFM-KNGQKLDS   88 (105)
T ss_dssp             --HHHHHHTTCCBSSEEEEE-ETTEEEEE
T ss_pred             --HHHHHHcCCCeecEEEEE-ECCEEEEE
Confidence              125667999999999888 68988753

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=96.66  E-value=0.0029  Score=53.67  Aligned_cols=66  Identities=8%  Similarity=0.070  Sum_probs=41.7

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .+|.|+++|.+.||++|..  +.|. +.++.     .++.++-|.+        |+..                      
T Consensus        17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~-----~~~~~~~vd~--------~~~~----------------------   61 (105)
T 4euy_A           17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENY-----NYVEKIEILL--------QDMQ----------------------   61 (105)
T ss_dssp             CSSEEEEEEEESSCHHHHHHHHHHHHHHHTC-----TTEEEEEEEE--------CCC-----------------------
T ss_pred             cCCCEEEEEeCCCCcchHHHHHHHHHHHHHc-----CCceEEEEEC--------CCCH----------------------
Confidence            4899999999999988754  5566 55543     2466666654        2111                      


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                           .+.+.|++++.|+++++. +|+.+.
T Consensus        62 -----~l~~~~~v~~~Pt~~~~~-~G~~~~   85 (105)
T 4euy_A           62 -----EIAGRYAVFTGPTVLLFY-NGKEIL   85 (105)
T ss_dssp             -------------CCCCEEEEEE-TTEEEE
T ss_pred             -----HHHHhcCCCCCCEEEEEe-CCeEEE
Confidence                 244568999999999995 898874

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=96.65  E-value=0.0043  Score=54.85  Aligned_cols=66  Identities=11%  Similarity=0.173  Sum_probs=47.3

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+++|.+.||++|..  +.|. ++++.+     ++.++.|.+        |++                       
T Consensus        37 ~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-----~v~~~~vd~--------d~~-----------------------   80 (124)
T 1xfl_A           37 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-----NVLFLKVDT--------DEL-----------------------   80 (124)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-----SEEEEEEET--------TTS-----------------------
T ss_pred             cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----CcEEEEEEC--------ccC-----------------------
Confidence            5899999999999988743  5566 666542     455555543        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          ..+.+.|++++.|+++++ ++|+++.
T Consensus        81 ----~~l~~~~~v~~~Pt~~~~-~~G~~~~  105 (124)
T 1xfl_A           81 ----KSVASDWAIQAMPTFMFL-KEGKILD  105 (124)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ----HHHHHHcCCCccCEEEEE-ECCEEEE
Confidence                135567899999999888 8999874

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=96.64  E-value=0.0041  Score=53.82  Aligned_cols=70  Identities=11%  Similarity=0.109  Sum_probs=49.8

Q ss_pred             CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      ||.|+++|.+.||++|.  .+.|. ++++.+      .+|+++-+ +     ...+                       .
T Consensus        29 ~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~------~~v~~~~~-~-----~~~~-----------------------~   73 (118)
T 1zma_A           29 KETATFFIGRKTCPYCRKFAGTLSGVVAETK------AHIYFINS-E-----EPSQ-----------------------L   73 (118)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHHC------CCCEEEET-T-----CGGG-----------------------H
T ss_pred             CCeEEEEEECCCCccHHHHHHHHHHHHHhcC------CeEEEEEC-C-----CcCc-----------------------H
Confidence            78899999999998874  36788 777653      35777765 1     0111                       1


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                      ...+.+.+.|++++.|+++++. +|+.+.
T Consensus        74 ~~~~~~~~~~~i~~~Pt~~~~~-~G~~~~  101 (118)
T 1zma_A           74 NDLQAFRSRYGIPTVPGFVHIT-DGQINV  101 (118)
T ss_dssp             HHHHHHHHHHTCCSSCEEEEEE-TTEEEE
T ss_pred             HHHHHHHHHcCCCCCCeEEEEE-CCEEEE
Confidence            2234567789999999999994 888763

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=96.62  E-value=0.0026  Score=55.69  Aligned_cols=65  Identities=14%  Similarity=0.070  Sum_probs=48.0

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      ||.|+++|.+.||++|..  +.|. +++++     .++.++.|.+        |+.                        
T Consensus        23 ~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-----~~v~~~~vd~--------~~~------------------------   65 (118)
T 2f51_A           23 PGLVLVDFFATWCGPCQRLGQILPSIAEAN-----KDVTFIKVDV--------DKN------------------------   65 (118)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHC-----TTSEEEEEET--------TTC------------------------
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHC-----CCeEEEEEEC--------CCC------------------------
Confidence            899999999999988753  5566 66664     3477777754        221                        


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCC---CCcee
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDP---QGRIL  438 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~p---qGkv~  438 (691)
                         ..+.+.|++++.|+++++++   +|+++
T Consensus        66 ---~~~~~~~~i~~~Pt~~~~~~~~~~G~~~   93 (118)
T 2f51_A           66 ---GNAADAYGVSSIPALFFVKKEGNEIKTL   93 (118)
T ss_dssp             ---HHHHHHTTCCSSSEEEEEEEETTEEEEE
T ss_pred             ---HHHHHhcCCCCCCEEEEEeCCCCcceEE
Confidence               12567799999999999987   47765

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.62  E-value=0.0057  Score=53.38  Aligned_cols=64  Identities=3%  Similarity=-0.206  Sum_probs=47.9

Q ss_pred             CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|+++|.+.||++|.  .+.|. ++++++    +.+.++.|.+        |+.                        
T Consensus        35 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~~vd~--------~~~------------------------   78 (130)
T 2dml_A           35 DGLWLVEFYAPWCGHCQRLTPEWKKAATALK----DVVKVGAVNA--------DKH------------------------   78 (130)
T ss_dssp             SSCEEEEEECTTCSTTGGGHHHHHHHHHHTT----TTSEEEEEET--------TTC------------------------
T ss_pred             CCeEEEEEECCCCHHHHhhCHHHHHHHHHhc----CceEEEEEeC--------CCC------------------------
Confidence            78999999999998874  36677 777764    2366666643        211                        


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCc
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGR  436 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGk  436 (691)
                         +.+.+.|++++.|++++++++|+
T Consensus        79 ---~~l~~~~~v~~~Pt~~~~~~~~~  101 (130)
T 2dml_A           79 ---QSLGGQYGVQGFPTIKIFGANKN  101 (130)
T ss_dssp             ---HHHHHHHTCCSSSEEEEESSCTT
T ss_pred             ---HHHHHHcCCCccCEEEEEeCCCC
Confidence               13556689999999999999987

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=96.61  E-value=0.0019  Score=57.56  Aligned_cols=67  Identities=12%  Similarity=0.104  Sum_probs=49.3

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .+|.|+++|.+.||++|..  +.|. ++++++    +++.++.|.+        |++                  +    
T Consensus        39 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~~v~~~~vd~--------~~~------------------~----   84 (128)
T 2o8v_B           39 ADGAILVDFWAEWCGPAKMIAPILDEIADEYQ----GKLTVAKLNI--------DQN------------------P----   84 (128)
T ss_dssp             CSSEEEEEEECSSCHHHHHTHHHHHHHHHHTT----TTEEEEEEET--------TTC------------------C----
T ss_pred             cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhc----CCeEEEEEEC--------CCC------------------H----
Confidence            4899999999999988743  5677 776654    3477777754        211                  1    


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                           .+.+.|++++.|+++++ ++|+++.
T Consensus        85 -----~l~~~~~v~~~Pt~~~~-~~G~~~~  108 (128)
T 2o8v_B           85 -----GTAPKYGIRGIPTLLLF-KNGEVAA  108 (128)
T ss_dssp             -----TTSGGGTCCSSSEEEEE-ETTEEEE
T ss_pred             -----HHHHHcCCCccCEEEEE-eCCEEEE
Confidence                 13456899999999999 8999864

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=96.58  E-value=0.0051  Score=51.16  Aligned_cols=66  Identities=11%  Similarity=-0.000  Sum_probs=47.8

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.++++|.+.||++|.-  +.|. ++++++    +++.++.|.+        |++                        
T Consensus        18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~--------~~~------------------------   61 (105)
T 1fb6_A           18 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYS----GKIAVYKLNT--------DEA------------------------   61 (105)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEET--------TTC------------------------
T ss_pred             CCcEEEEEECCCChHHHHHHHHHHHHHHHhc----CceEEEEEcC--------cch------------------------
Confidence            789999999999988743  5677 776654    3466666653        211                        


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                         ..+.+.|++++.|+++++ ++|+.+.
T Consensus        62 ---~~~~~~~~v~~~Pt~~~~-~~g~~~~   86 (105)
T 1fb6_A           62 ---PGIATQYNIRSIPTVLFF-KNGERKE   86 (105)
T ss_dssp             ---HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ---HHHHHhCCCCcccEEEEE-eCCeEEE
Confidence               135567899999998888 7998764

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=96.58  E-value=0.0044  Score=53.21  Aligned_cols=66  Identities=9%  Similarity=0.051  Sum_probs=47.6

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+|+|.+.||++|..  +.|. ++++.+     ++.++-|.+        |+.                       
T Consensus        23 ~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~-----~~~~~~vd~--------~~~-----------------------   66 (109)
T 3f3q_A           23 QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-----QADFYKLDV--------DEL-----------------------   66 (109)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEET--------TTC-----------------------
T ss_pred             cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-----CCEEEEEEC--------CCC-----------------------
Confidence            3899999999999988743  5677 766642     355665543        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          ..+.+.|++++.|++++++ +|+.+.
T Consensus        67 ----~~l~~~~~v~~~Pt~~~~~-~G~~~~   91 (109)
T 3f3q_A           67 ----GDVAQKNEVSAMPTLLLFK-NGKEVA   91 (109)
T ss_dssp             ----HHHHHHTTCCSSSEEEEEE-TTEEEE
T ss_pred             ----HHHHHHcCCCccCEEEEEE-CCEEEE
Confidence                2255679999999999998 898764

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=96.56  E-value=0.0044  Score=52.41  Aligned_cols=66  Identities=8%  Similarity=0.036  Sum_probs=47.9

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      ||.|+++|.+.||++|.-  +.|. ++++.+    +++.++.|.+        |.                         
T Consensus        24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~vd~--------~~-------------------------   66 (112)
T 1ep7_A           24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYA----GKVIFLKVDV--------DA-------------------------   66 (112)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTSEEEEEET--------TT-------------------------
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcC----CCeEEEEEEC--------Cc-------------------------
Confidence            889999999999988753  5577 766653    3577777653        21                         


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                        ...+.+.|++++.|+++++ ++|+++.
T Consensus        67 --~~~~~~~~~v~~~Pt~~~~-~~G~~~~   92 (112)
T 1ep7_A           67 --VAAVAEAAGITAMPTFHVY-KDGVKAD   92 (112)
T ss_dssp             --THHHHHHHTCCBSSEEEEE-ETTEEEE
T ss_pred             --hHHHHHHcCCCcccEEEEE-ECCeEEE
Confidence              1234566899999998877 7999864

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=96.55  E-value=0.0043  Score=56.72  Aligned_cols=66  Identities=14%  Similarity=0.105  Sum_probs=48.6

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+++|.+.||++|.-  +.|. ++++.     .++.++-|.+        |+.                       
T Consensus        31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~-----~~v~~~~vd~--------~~~-----------------------   74 (153)
T 2wz9_A           31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKEL-----PQVSFVKLEA--------EGV-----------------------   74 (153)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-----TTSEEEEEET--------TTS-----------------------
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHHHHHHHc-----CCeEEEEEEC--------CCC-----------------------
Confidence            3899999999999988743  5566 66653     3466776654        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          +.+.+.|++++.|++++++ +|+++.
T Consensus        75 ----~~l~~~~~v~~~Pt~~~~~-~G~~~~   99 (153)
T 2wz9_A           75 ----PEVSEKYEISSVPTFLFFK-NSQKID   99 (153)
T ss_dssp             ----HHHHHHTTCCSSSEEEEEE-TTEEEE
T ss_pred             ----HHHHHHcCCCCCCEEEEEE-CCEEEE
Confidence                1355679999999999999 999874

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=96.49  E-value=0.0042  Score=52.89  Aligned_cols=68  Identities=12%  Similarity=0.015  Sum_probs=46.9

Q ss_pred             ecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391          332 LRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII  408 (691)
Q Consensus       332 L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i  408 (691)
                      .+||.|+++|.+.||++|.  .+.|. ++++.+     ++.++.|.+       ++.                       
T Consensus        22 ~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~-----~v~~~~vd~-------~~~-----------------------   66 (111)
T 2pu9_C           22 AGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL-----DVIFLKLDC-------NQE-----------------------   66 (111)
T ss_dssp             CTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEEC-------SST-----------------------
T ss_pred             cCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC-----CeEEEEEec-------Ccc-----------------------
Confidence            3689999999999998874  35677 776643     355555543       111                       


Q ss_pred             chHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          409 EPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          ...+.+.|++++.|++ +++++|+++.
T Consensus        67 ----~~~~~~~~~v~~~Pt~-~~~~~G~~~~   92 (111)
T 2pu9_C           67 ----NKTLAKELGIRVVPTF-KILKENSVVG   92 (111)
T ss_dssp             ----THHHHHHHCCSBSSEE-EEESSSSEEE
T ss_pred             ----hHHHHHHcCCCeeeEE-EEEeCCcEEE
Confidence                1235566899999995 5569999864

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=96.46  E-value=0.0043  Score=53.59  Aligned_cols=66  Identities=8%  Similarity=-0.118  Sum_probs=48.7

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|+++|.+.||++|.-  +.|. ++++++.    ++.++-|.+        |+..                       
T Consensus        21 ~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~----~~~~~~vd~--------~~~~-----------------------   65 (122)
T 3aps_A           21 KTHWVVDFYAPWCGPCQNFAPEFELLARMIKG----KVRAGKVDC--------QAYP-----------------------   65 (122)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT----TCEEEEEET--------TTCH-----------------------
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC----CeEEEEEeC--------cCCH-----------------------
Confidence            789999999999988743  6677 7777652    466666654        2111                       


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                          .+.+.|++++.|++++++++|++.
T Consensus        66 ----~~~~~~~v~~~Pt~~~~~~~~~~~   89 (122)
T 3aps_A           66 ----QTCQKAGIKAYPSVKLYQYERAKK   89 (122)
T ss_dssp             ----HHHHHTTCCSSSEEEEEEEEGGGT
T ss_pred             ----HHHHHcCCCccceEEEEeCCCccc
Confidence                245679999999999999888743

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=96.46  E-value=0.028  Score=64.35  Aligned_cols=144  Identities=13%  Similarity=0.010  Sum_probs=85.8

Q ss_pred             ceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCC
Q 044391          330 EVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPT  406 (691)
Q Consensus       330 s~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d  406 (691)
                      +.+.||.|++.|.+.||++|.  .+.|. ++++++    +++.++.|..        |+..                   
T Consensus       451 ~~~~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~----~~v~~~~vd~--------~~~~-------------------  499 (780)
T 3apo_A          451 PASDKEPWLVDFFAPWSPPSRALLPELRKASTLLY----GQLKVGTLDC--------TIHE-------------------  499 (780)
T ss_dssp             CTTCCSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEET--------TTCH-------------------
T ss_pred             HHcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhc----CCeEEEEEeC--------CCCH-------------------
Confidence            344899999999999998874  46677 877775    3466777653        2111                   


Q ss_pred             CCchHHHHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCcccccCChhhHHHHHhhhccchhhhcccCch-hhhh
Q 044391          407 IIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDIDA-TILE  485 (691)
Q Consensus       407 ~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~e~L~~~e~w~lelLvd~id~-~I~~  485 (691)
                              .+.+.|++++.|++++++ +|+.....        |    +++.+.+.+.-++-.-  ..+. .++. ...+
T Consensus       500 --------~~~~~~~v~~~Pt~~~~~-~g~~~~~~--------g----~~~~~~l~~fi~~~~~--~~v~-~l~~~~f~~  555 (780)
T 3apo_A          500 --------GLCNMYNIQAYPTTVVFN-QSSIHEYE--------G----HHSAEQILEFIEDLRN--PSVV-SLTPSTFNE  555 (780)
T ss_dssp             --------HHHHHTTCCSSSEEEEEE-TTEEEEEC--------S----CSCHHHHHHHHHHHHS--CSEE-ECCHHHHHH
T ss_pred             --------HHHHHcCCCcCCeEEEEc-CCceeeec--------C----cccHHHHHHHHHhhcc--ccee-ecCcccHHH
Confidence                    156679999999999994 47652211        2    2344333332221100  0011 1221 2233


Q ss_pred             hhcC---CcEEEEEccCChhH---HHHHHHHHHHHHHHhCCceeeEEeccc
Q 044391          486 WMKE---ERYICLYGGGDIEW---IRRFTTSAKAVARAAQINLGMAYVGKN  530 (691)
Q Consensus       486 ~i~e---gK~I~LYgG~D~~W---ir~FT~~~~~Ik~~a~~~~E~v~Vgkd  530 (691)
                      .+..   ++..+++|.+  .|   |+++.+.+.++|+..+..+-++.|..+
T Consensus       556 ~v~~~~~~~~~lv~F~a--p~C~~c~~~~p~~~~lA~~~~~~v~~~~vd~~  604 (780)
T 3apo_A          556 LVKQRKHDEVWMVDFYS--PWSHPSQVLMPEWKRMARTLTGLINVGSVDCG  604 (780)
T ss_dssp             HTTTCCTTCCEEEEEEC--TTCHHHHHHHHHHHHHHHHHTTTSEEEEEETT
T ss_pred             HhhccCCCCeEEEEEEC--CCCHHHHHhhHHHHHHHHHhhCCeEEEEEECc
Confidence            4443   5666777777  67   688999999998875445555555443

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.45  E-value=0.0059  Score=54.42  Aligned_cols=68  Identities=12%  Similarity=0.034  Sum_probs=47.9

Q ss_pred             cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      ++|.|+++|.+.||++|.  .+.|. ++++.+   +.++.++.|-+        |+..                      
T Consensus        25 ~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~---~~~v~~~~vd~--------~~~~----------------------   71 (137)
T 2dj0_A           25 KRVTWIVEFFANWSNDCQSFAPIYADLSLKYN---CTGLNFGKVDV--------GRYT----------------------   71 (137)
T ss_dssp             TTSCEEEEECCTTCSTTTTTHHHHHHHHHHHC---SSSCEEEECCT--------TTCH----------------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhC---CCCeEEEEEeC--------ccCH----------------------
Confidence            356899999999998874  47788 888775   23566666533        2211                      


Q ss_pred             hHHHHHHHHhhCcC------CceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFS------KKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~  439 (691)
                           .+.+.|+++      +.|+++++ .+|+.+.
T Consensus        72 -----~~~~~~~v~~~~~~~~~Pt~~~~-~~G~~~~  101 (137)
T 2dj0_A           72 -----DVSTRYKVSTSPLTKQLPTLILF-QGGKEAM  101 (137)
T ss_dssp             -----HHHHHTTCCCCSSSSCSSEEEEE-SSSSEEE
T ss_pred             -----HHHHHccCcccCCcCCCCEEEEE-ECCEEEE
Confidence                 134557777      99999999 7899875

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=96.45  E-value=0.0026  Score=53.93  Aligned_cols=69  Identities=7%  Similarity=-0.068  Sum_probs=48.5

Q ss_pred             cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+++|.+.||++|.  .+.+. ++++++.. +.++.++-|-+        ++                  .+    
T Consensus        23 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~v~~~~vd~--------~~------------------~~----   71 (120)
T 1mek_A           23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAE-GSEIRLAKVDA--------TE------------------ES----   71 (120)
T ss_dssp             HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTT-CCCCBCEEEET--------TT------------------CC----
T ss_pred             cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhcc-CCcEEEEEEcC--------CC------------------CH----
Confidence            589999999999998874  36788 88887643 34455554432        11                  11    


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                           .+.+.|++++.|+++++ ++|+.+
T Consensus        72 -----~~~~~~~v~~~Pt~~~~-~~g~~~   94 (120)
T 1mek_A           72 -----DLAQQYGVRGYPTIKFF-RNGDTA   94 (120)
T ss_dssp             -----SSHHHHTCCSSSEEEEE-ESSCSS
T ss_pred             -----HHHHHCCCCcccEEEEE-eCCCcC
Confidence                 23345799999999999 788865

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=96.45  E-value=0.0047  Score=54.84  Aligned_cols=67  Identities=10%  Similarity=0.070  Sum_probs=49.2

Q ss_pred             ecCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391          332 LRRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII  408 (691)
Q Consensus       332 L~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i  408 (691)
                      .+||.|+++|.+.||++|.-  +.|. ++++.     .++.++.|.+        |+.                      
T Consensus        44 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~-----~~v~~~~v~~--------~~~----------------------   88 (139)
T 3d22_A           44 RDGKIVLANFSARWCGPSRQIAPYYIELSENY-----PSLMFLVIDV--------DEL----------------------   88 (139)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHHHHHHC-----TTSEEEEEET--------TTS----------------------
T ss_pred             hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-----CCCEEEEEeC--------ccc----------------------
Confidence            46999999999999988743  5566 66654     2466666653        211                      


Q ss_pred             chHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          409 EPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                           ..+.+.|++++.|+++++ ++|+++.
T Consensus        89 -----~~~~~~~~v~~~Pt~~~~-~~G~~~~  113 (139)
T 3d22_A           89 -----SDFSASWEIKATPTFFFL-RDGQQVD  113 (139)
T ss_dssp             -----HHHHHHTTCCEESEEEEE-ETTEEEE
T ss_pred             -----HHHHHHcCCCcccEEEEE-cCCeEEE
Confidence                 235567899999999988 8999874

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=96.44  E-value=0.0046  Score=51.58  Aligned_cols=66  Identities=9%  Similarity=0.060  Sum_probs=46.5

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+++|.+.||++|.-  +.|. +.++.+     ++.++.|.+        |+.                       
T Consensus        19 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-----~~~~~~vd~--------~~~-----------------------   62 (105)
T 3m9j_A           19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-----NVIFLEVDV--------DDC-----------------------   62 (105)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHST-----TSEEEEEET--------TTC-----------------------
T ss_pred             CCCeEEEEEECCCChhhHHHHHHHHHHHHHcc-----CeEEEEEEh--------hhh-----------------------
Confidence            5899999999999988743  4566 655442     256665543        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          +.+.+.|++++.|+++++ .+|+.+.
T Consensus        63 ----~~~~~~~~v~~~Pt~~~~-~~g~~~~   87 (105)
T 3m9j_A           63 ----QDVASESEVKSMPTFQFF-KKGQKVG   87 (105)
T ss_dssp             ----HHHHHHTTCCBSSEEEEE-ETTEEEE
T ss_pred             ----HHHHHHcCCCcCcEEEEE-ECCeEEE
Confidence                125567899999999999 7888764

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=96.44  E-value=0.0075  Score=63.17  Aligned_cols=105  Identities=10%  Similarity=0.004  Sum_probs=66.4

Q ss_pred             ceecCCCCceeecceecCcEEEEEEecC-CCChhhhHHHHHHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391          317 PVVDGSSRTRVNIEVLRRKHVLLLISSL-DLSDEEILVLHLYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA  395 (691)
Q Consensus       317 ~l~~g~~~~kV~Is~L~gK~VlL~fSal-~~~~~e~~~L~iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~  395 (691)
                      +-+-+.+|+.|++++++||.|.|+|=-. ++|.|..- +.-|.+  .. .++++||=||. |     +....+.|-+-. 
T Consensus         7 F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e-~~~~~~--~~-~~~~~v~gis~-D-----~~~~~~~f~~~~-   75 (322)
T 4eo3_A            7 FELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTRE-AVEFSR--EN-FEKAQVVGISR-D-----SVEALKRFKEKN-   75 (322)
T ss_dssp             CEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHH-HHHHHH--SC-CTTEEEEEEES-C-----CHHHHHHHHHHH-
T ss_pred             cEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHH-HHHHHH--Hh-hCCCEEEEEeC-C-----CHHHHHHHHHhh-
Confidence            3344567889999999999999999422 34434322 122332  22 46799999985 5     355667786643 


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCcC----CceEEEEeCCCCceec
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKFS----KKAILVPVDPQGRILN  439 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~----~iP~LVvL~pqGkv~~  439 (691)
                      .+|+--+--++       ..+.+.|++-    .+|+..++||+|++..
T Consensus        76 ~l~fp~l~D~~-------~~v~~~ygv~~~~~~~r~tfiId~~G~i~~  116 (322)
T 4eo3_A           76 DLKVTLLSDPE-------GILHEFFNVLENGKTVRSTFLIDRWGFVRK  116 (322)
T ss_dssp             TCCSEEEECTT-------CHHHHHTTCEETTEECCEEEEECTTSBEEE
T ss_pred             CCceEEEEcCc-------hHHHHhcCCCCCCcCccEEEEECCCCEEEE
Confidence            34443332222       2345558873    4788999999999963

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=96.42  E-value=0.0068  Score=51.98  Aligned_cols=67  Identities=15%  Similarity=0.141  Sum_probs=48.5

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .+|.++++|.+.||++|.-  +.|. +.++.+    .++.++.|.+        |+.                       
T Consensus        29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~--------~~~-----------------------   73 (121)
T 2i1u_A           29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERA----TDLTVAKLDV--------DTN-----------------------   73 (121)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEET--------TTC-----------------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCeEEEEEEC--------CCC-----------------------
Confidence            3789999999999988753  5566 666543    3577777764        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          ..+.+.|++++.|+++++ ++|+++.
T Consensus        74 ----~~~~~~~~i~~~Pt~~~~-~~g~~~~   98 (121)
T 2i1u_A           74 ----PETARNFQVVSIPTLILF-KDGQPVK   98 (121)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ----HHHHHhcCCCcCCEEEEE-ECCEEEE
Confidence                124567899999999988 5998864

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=96.38  E-value=0.0069  Score=52.27  Aligned_cols=66  Identities=12%  Similarity=0.160  Sum_probs=47.1

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+++|.+.||++|.-  +.|. ++++.+     ++.++.|.+        |++                       
T Consensus        33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~vd~--------~~~-----------------------   76 (122)
T 2vlu_A           33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFP-----NAVFLKVDV--------DEL-----------------------   76 (122)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEET--------TTC-----------------------
T ss_pred             cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----CcEEEEEEC--------CCC-----------------------
Confidence            4899999999999988743  5566 666542     266666653        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          ..+.+.|++++.|+++++ ++|+++.
T Consensus        77 ----~~~~~~~~v~~~Pt~~~~-~~G~~~~  101 (122)
T 2vlu_A           77 ----KPIAEQFSVEAMPTFLFM-KEGDVKD  101 (122)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ----HHHHHHcCCCcccEEEEE-eCCEEEE
Confidence                134567899999998877 8999864

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=96.34  E-value=0.0033  Score=57.45  Aligned_cols=68  Identities=10%  Similarity=-0.004  Sum_probs=50.0

Q ss_pred             cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .||.|+++|.+.||++|.  .+.|. ++++++    +++.++.|-+        |+.                  ++   
T Consensus        22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~~v~~~~vd~--------d~~------------------~~---   68 (142)
T 1qgv_A           22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK----NFAVIYLVDI--------TEV------------------PD---   68 (142)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT----TTEEEEEEET--------TTC------------------CT---
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhC----CCeEEEEEcc--------ccC------------------HH---
Confidence            389999999999998874  36788 888764    3477777754        211                  11   


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                            +.+.|++++.|+++++ .+|+.+..
T Consensus        69 ------~~~~~~i~~~Pt~~~~-~~G~~v~~   92 (142)
T 1qgv_A           69 ------FNKMYELYDPCTVMFF-FRNKHIMI   92 (142)
T ss_dssp             ------TTTSSCSCSSCEEEEE-ETTEEEEE
T ss_pred             ------HHHHcCCCCCCEEEEE-ECCcEEEE
Confidence                  3456899999999999 48888753

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=96.32  E-value=0.0065  Score=54.59  Aligned_cols=66  Identities=12%  Similarity=0.056  Sum_probs=48.8

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|+++|.+.||++|.-  +.|. +.++++    +++.++.|-+        |+..                       
T Consensus        24 ~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~----~~v~~~~vd~--------~~~~-----------------------   68 (140)
T 3hz4_A           24 KKPVVVMFYSPACPYCKAMEPYFEEYAKEYG----SSAVFGRINI--------ATNP-----------------------   68 (140)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHHT----TTSEEEEEET--------TTCH-----------------------
T ss_pred             CCcEEEEEECCCChhHHHHHHHHHHHHHHhC----CceEEEEEEC--------CcCH-----------------------
Confidence            899999999999988743  5677 777764    2477777654        2111                       


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          .+.+.|++++.|+++++ .+|+.+.
T Consensus        69 ----~l~~~~~v~~~Pt~~~~-~~G~~~~   92 (140)
T 3hz4_A           69 ----WTAEKYGVQGTPTFKFF-CHGRPVW   92 (140)
T ss_dssp             ----HHHHHHTCCEESEEEEE-ETTEEEE
T ss_pred             ----hHHHHCCCCcCCEEEEE-eCCcEEE
Confidence                25567899999999999 7898763

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=96.32  E-value=0.0095  Score=50.97  Aligned_cols=66  Identities=5%  Similarity=-0.026  Sum_probs=47.3

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+++|.+.||++|.-  +.|. ++++.+     ++.++.|.+        |...                      
T Consensus        25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-----~v~~~~vd~--------~~~~----------------------   69 (112)
T 1syr_A           25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-----KMVFIKVDV--------DEVS----------------------   69 (112)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEET--------TTTH----------------------
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC-----CCEEEEEEC--------CCCH----------------------
Confidence            5899999999999988743  5576 666542     366666653        2111                      


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                           .+.+.|++.+.|+++++ .+|+++.
T Consensus        70 -----~~~~~~~v~~~Pt~~~~-~~G~~~~   93 (112)
T 1syr_A           70 -----EVTEKENITSMPTFKVY-KNGSSVD   93 (112)
T ss_dssp             -----HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -----HHHHHcCCCcccEEEEE-ECCcEEE
Confidence                 34566899999998877 5898864

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=96.32  E-value=0.0064  Score=56.26  Aligned_cols=67  Identities=6%  Similarity=-0.059  Sum_probs=50.1

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .+|.|+++|.+.||++|..  +.|. ++++++.    ++.++-|.+        |++                       
T Consensus        63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~----~v~~~~vd~--------~~~-----------------------  107 (155)
T 2ppt_A           63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAG----QVRLAKIDT--------QAH-----------------------  107 (155)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT----TCEEEEEET--------TTS-----------------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHccC----CEEEEEEeC--------Ccc-----------------------
Confidence            5899999999999988743  6688 8877752    366666653        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          ..+.+.|++++.|+++++ ++|+++.
T Consensus       108 ----~~l~~~~~i~~~Pt~~~~-~~G~~~~  132 (155)
T 2ppt_A          108 ----PAVAGRHRIQGIPAFILF-HKGRELA  132 (155)
T ss_dssp             ----THHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ----HHHHHHcCCCcCCEEEEE-eCCeEEE
Confidence                135667999999999999 7999864

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=96.32  E-value=0.0043  Score=57.13  Aligned_cols=65  Identities=12%  Similarity=-0.023  Sum_probs=47.5

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|++.|.+.||++|..  +.|. ++++++    +.+.++-|-+        |+.                        
T Consensus        23 ~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~----~~~~~~~vd~--------d~~------------------------   66 (149)
T 3gix_A           23 EKVLVLRFGRDEDPVCLQLDDILSKTSSDLS----KMAAIYLVDV--------DQT------------------------   66 (149)
T ss_dssp             SSEEEEEEECTTSHHHHHHHHHHHHHHTTTT----TTEEEEEEET--------TTC------------------------
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHcc----CceEEEEEEC--------CcC------------------------
Confidence            899999999999988743  6677 776653    3366666543        211                        


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                         ..+.+.|++++.|+++ +..+|+.+
T Consensus        67 ---~~l~~~~~v~~~Pt~~-~~~~G~~v   90 (149)
T 3gix_A           67 ---AVYTQYFDISYIPSTV-FFFNGQHM   90 (149)
T ss_dssp             ---CHHHHHTTCCSSSEEE-EEETTEEE
T ss_pred             ---HHHHHHcCCCccCeEE-EEECCeEE
Confidence               1245678999999999 77899988

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=96.28  E-value=0.008  Score=53.51  Aligned_cols=66  Identities=5%  Similarity=-0.007  Sum_probs=48.0

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      ++|.|+++|.+.||++|..  +.|. ++++.     .++.++.|.+        |++                       
T Consensus        36 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-----~~v~~~~vd~--------d~~-----------------------   79 (125)
T 1r26_A           36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEF-----PTVKFAKVDA--------DNN-----------------------   79 (125)
T ss_dssp             SSSCEEEEEECTTCHHHHHTHHHHHHHHHHC-----TTSEEEEEET--------TTC-----------------------
T ss_pred             cCCEEEEEEECCcCHhHHHHHHHHHHHHHHC-----CCCEEEEEEC--------CCC-----------------------
Confidence            4789999999999988743  5676 66664     2477777654        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          ..+.+.|++++.|+++++ ++|+++.
T Consensus        80 ----~~l~~~~~v~~~Pt~~i~-~~G~~~~  104 (125)
T 1r26_A           80 ----SEIVSKCRVLQLPTFIIA-RSGKMLG  104 (125)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ----HHHHHHcCCCcccEEEEE-eCCeEEE
Confidence                125567899999998887 8998764

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=96.26  E-value=0.0056  Score=53.52  Aligned_cols=69  Identities=7%  Similarity=0.018  Sum_probs=48.5

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+++|.+.||++|..  +.|. ++++.+.+   ++.++.|.+        |..                       
T Consensus        32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~---~v~~~~vd~--------d~~-----------------------   77 (121)
T 2j23_A           32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGD---KVGFYKVDV--------DEQ-----------------------   77 (121)
T ss_dssp             SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHH---HSEEEEEET--------TTC-----------------------
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCC---cEEEEEEEC--------cCC-----------------------
Confidence            4889999999999998853  4566 66554421   377777754        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                          ..+.+.|++.+.|+++++ ++|+.+..
T Consensus        78 ----~~~~~~~~v~~~Pt~~~~-~~G~~~~~  103 (121)
T 2j23_A           78 ----SQIAQEVGIRAMPTFVFF-KNGQKIDT  103 (121)
T ss_dssp             ----HHHHHHHTCCSSSEEEEE-ETTEEEEE
T ss_pred             ----HHHHHHcCCCcccEEEEE-ECCeEEee
Confidence                124566899999999988 59988653

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=96.19  E-value=0.01  Score=50.51  Aligned_cols=66  Identities=9%  Similarity=0.129  Sum_probs=46.6

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+++|.+.||++|.-  +.|. +.++.+     ++.++-|.+        |+.                       
T Consensus        27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~v~~--------~~~-----------------------   70 (118)
T 2vm1_A           27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-----GAIFLKVDV--------DEL-----------------------   70 (118)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEET--------TTS-----------------------
T ss_pred             CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-----CcEEEEEEc--------ccC-----------------------
Confidence            4899999999999988753  5566 655542     456665543        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          +.+.+.|++++.|+++++ ++|+.+.
T Consensus        71 ----~~~~~~~~v~~~Pt~~~~-~~g~~~~   95 (118)
T 2vm1_A           71 ----KDVAEAYNVEAMPTFLFI-KDGEKVD   95 (118)
T ss_dssp             ----HHHHHHTTCCSBSEEEEE-ETTEEEE
T ss_pred             ----HHHHHHcCCCcCcEEEEE-eCCeEEE
Confidence                234567899999999988 7998764

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.19  E-value=0.0042  Score=54.47  Aligned_cols=68  Identities=12%  Similarity=0.060  Sum_probs=47.3

Q ss_pred             cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      ++|.|+++|.+.||++|.  .+.|. ++++++.+  .++.++.|-+        ++.                  +.   
T Consensus        24 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~--~~~~~~~vd~--------~~~------------------~~---   72 (133)
T 2dj3_A           24 PKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQ--KDLVIAKMDA--------TAN------------------DI---   72 (133)
T ss_dssp             TTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTS--SSEEEEEECT--------TTS------------------CC---
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCC--CCEEEEEecC--------CcC------------------HH---
Confidence            489999999999999874  36788 88887632  3455554422        111                  11   


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRI  437 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv  437 (691)
                            +.+.|++++.|+++++++.|++
T Consensus        73 ------~~~~~~v~~~Pt~~~~~~g~~~   94 (133)
T 2dj3_A           73 ------TNDQYKVEGFPTIYFAPSGDKK   94 (133)
T ss_dssp             ------CCSSCCCSSSSEEEEECTTCTT
T ss_pred             ------HHhhcCCCcCCEEEEEeCCCcc
Confidence                  1235899999999999887754

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=96.18  E-value=0.01  Score=50.13  Aligned_cols=66  Identities=9%  Similarity=0.253  Sum_probs=46.1

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+++|.+.||++|.-  +.|. +.++.+     ++.++.|.+        |+.                       
T Consensus        25 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----~v~~~~v~~--------~~~-----------------------   68 (113)
T 1ti3_A           25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-----NVTFLKVDV--------DEL-----------------------   68 (113)
T ss_dssp             SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-----SEEEEEEET--------TTC-----------------------
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-----CcEEEEEEc--------ccc-----------------------
Confidence            4899999999999988753  4566 555532     466666543        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          ..+.+.|++++.|+++++ ++|+++.
T Consensus        69 ----~~~~~~~~v~~~Pt~~~~-~~G~~~~   93 (113)
T 1ti3_A           69 ----KAVAEEWNVEAMPTFIFL-KDGKLVD   93 (113)
T ss_dssp             ----HHHHHHHHCSSTTEEEEE-ETTEEEE
T ss_pred             ----HHHHHhCCCCcccEEEEE-eCCEEEE
Confidence                124556899999999998 6998874

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=96.16  E-value=0.01  Score=53.48  Aligned_cols=68  Identities=6%  Similarity=-0.017  Sum_probs=49.2

Q ss_pred             ecCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391          332 LRRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII  408 (691)
Q Consensus       332 L~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i  408 (691)
                      -+||.|+++|.+.||++|.-  +.|. ++++.+    .++.++-|.+        |++.                     
T Consensus        53 ~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~----~~~~~~~vd~--------~~~~---------------------   99 (148)
T 3p2a_A           53 QDDLPMVIDFWAPWCGPCRSFAPIFAETAAERA----GKVRFVKVNT--------EAEP---------------------   99 (148)
T ss_dssp             TCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTT----TTCEEEEEET--------TTCH---------------------
T ss_pred             hcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcC----CceEEEEEEC--------cCCH---------------------
Confidence            45899999999999988743  5677 777654    3466666643        2111                     


Q ss_pred             chHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          409 EPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                            .+.+.|++++.|+++++ .+|+.+.
T Consensus       100 ------~l~~~~~v~~~Pt~~~~-~~G~~~~  123 (148)
T 3p2a_A          100 ------ALSTRFRIRSIPTIMLY-RNGKMID  123 (148)
T ss_dssp             ------HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ------HHHHHCCCCccCEEEEE-ECCeEEE
Confidence                  35567899999999999 5898764

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=96.15  E-value=0.0011  Score=62.50  Aligned_cols=45  Identities=11%  Similarity=0.061  Sum_probs=34.4

Q ss_pred             hhCcCCceEEEEeCCCCceecccHHHHHHHhCcccccCChhhHHHHHhh
Q 044391          419 VWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKA  467 (691)
Q Consensus       419 ~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~e~L~~~  467 (691)
                      .++++++|++++++|+|+++..    ++-..+..-|+++.+..+++-+.
T Consensus        95 ~~~v~~~PT~~f~~~~G~~v~~----~~G~~~~~~~~~~~~~~~~ll~~  139 (151)
T 3ph9_A           95 SPDGQYVPRIMFVDPSLTVRAD----IAGRYSNRLYTYEPRDLPLLIEN  139 (151)
T ss_dssp             CTTCCCSSEEEEECTTSCBCTT----CCCSCTTSTTCCCGGGHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCCCEEEE----EeCCcCCcccccchhhHHHHHHH
Confidence            3678999999999999999873    23345567788988877776654

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=96.09  E-value=0.0031  Score=55.92  Aligned_cols=67  Identities=12%  Similarity=0.089  Sum_probs=44.7

Q ss_pred             cCcEEEEEEecCCCC--------------hhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391          333 RRKHVLLLISSLDLS--------------DEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA  395 (691)
Q Consensus       333 ~gK~VlL~fSal~~~--------------~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~  395 (691)
                      .||.|+++|.+.||+              +|.-  +.+. ++++.+    +++.++-|.+        |++         
T Consensus        20 ~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~----~~~~~~~vd~--------d~~---------   78 (123)
T 1oaz_A           20 ADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQ----GKLTVAKLNI--------DQN---------   78 (123)
T ss_dssp             CSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-----------CEEEEEET--------TSC---------
T ss_pred             CCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhc----CCeEEEEEEC--------CCC---------
Confidence            489999999999999              8743  5566 655543    3466666654        211         


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                               +         .+.+.|++++.|+++++ ++|+++.
T Consensus        79 ---------~---------~l~~~~~v~~~Pt~~~~-~~G~~~~  103 (123)
T 1oaz_A           79 ---------P---------GTAPKYGIRGIPTLLLF-KNGEVAA  103 (123)
T ss_dssp             ---------T---------TTGGGGTCCBSSEEEEE-ESSSEEE
T ss_pred             ---------H---------HHHHHcCCCccCEEEEE-ECCEEEE
Confidence                     1         13466899999999999 9999864

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=96.07  E-value=0.0071  Score=52.05  Aligned_cols=67  Identities=10%  Similarity=0.129  Sum_probs=44.2

Q ss_pred             ecCcEEEEEEecCCCChhhh--HHHHHHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          332 LRRKHVLLLISSLDLSDEEI--LVLHLYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       332 L~gK~VlL~fSal~~~~~e~--~~L~iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .+||.|+++|.+.||++|.-  +.|.   ++.++.  ++.++-|.+        |+.                       
T Consensus        31 ~~~~~~vv~f~a~wC~~C~~~~~~~~---~~~~~~--~~~~~~vd~--------~~~-----------------------   74 (117)
T 2xc2_A           31 HKNKLVVVDFFATWCGPCKTIAPLFK---ELSEKY--DAIFVKVDV--------DKL-----------------------   74 (117)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHH---HHHTTS--SSEEEEEET--------TTS-----------------------
T ss_pred             CCCCEEEEEEECCCCHhHHHHhHHHH---HHHHHc--CcEEEEEEC--------Ccc-----------------------
Confidence            36899999999999988743  3444   433221  344444432        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          +.+.+.|++++.|+++++ ++|+++.
T Consensus        75 ----~~~~~~~~v~~~Pt~~~~-~~G~~~~   99 (117)
T 2xc2_A           75 ----EETARKYNISAMPTFIAI-KNGEKVG   99 (117)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ----HHHHHHcCCCccceEEEE-eCCcEEE
Confidence                135567899999998887 7898764

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=96.06  E-value=0.013  Score=57.39  Aligned_cols=69  Identities=9%  Similarity=-0.130  Sum_probs=51.7

Q ss_pred             CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|+++|.+.||++|.  .+.+. ++++++.. +.++.++.|.+-+      |+                         
T Consensus        30 ~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~-~~~v~~~~vd~~~------~~-------------------------   77 (244)
T 3q6o_A           30 RSAWAVEFFASWCGHCIAFAPTWXALAEDVKAW-RPALYLAALDCAE------ET-------------------------   77 (244)
T ss_dssp             SSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGG-TTTEEEEEEETTS------TT-------------------------
T ss_pred             CCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhc-cCcEEEEEEeCCc------hh-------------------------
Confidence            59999999999998874  47788 99888753 4568888886511      11                         


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCc
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGR  436 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGk  436 (691)
                        -+.+.+.|++++.|+++++++.++
T Consensus        78 --~~~l~~~~~v~~~Pt~~~~~~g~~  101 (244)
T 3q6o_A           78 --NSAVCRDFNIPGFPTVRFFXAFTX  101 (244)
T ss_dssp             --THHHHHHTTCCSSSEEEEECTTCC
T ss_pred             --hHHHHHHcCCCccCEEEEEeCCCc
Confidence              134566799999999999997443

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=96.03  E-value=0.015  Score=48.22  Aligned_cols=66  Identities=8%  Similarity=0.088  Sum_probs=47.0

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+++|.+.||++|.-  +.|. +.++.+     ++.++.|.+        |+.                       
T Consensus        18 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~v~~--------~~~-----------------------   61 (104)
T 2vim_A           18 KGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-----EVEFAKVDV--------DQN-----------------------   61 (104)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEET--------TTC-----------------------
T ss_pred             CCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-----CCEEEEEec--------cCC-----------------------
Confidence            4899999999999988753  4566 655532     477777654        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          ..+.+.|++++.|+++++. +|+.+.
T Consensus        62 ----~~~~~~~~v~~~Pt~~~~~-~g~~~~   86 (104)
T 2vim_A           62 ----EEAAAKYSVTAMPTFVFIK-DGKEVD   86 (104)
T ss_dssp             ----HHHHHHTTCCSSSEEEEEE-TTEEEE
T ss_pred             ----HHHHHHcCCccccEEEEEe-CCcEEE
Confidence                1345668999999988885 898765

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=96.00  E-value=0.013  Score=51.32  Aligned_cols=70  Identities=11%  Similarity=0.050  Sum_probs=48.1

Q ss_pred             cCcEEEEEEecCCCChhh--hHHHH-HHHHhhcc-CCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391          333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAR-EEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII  408 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~-~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i  408 (691)
                      .+|.|+++|.+.||++|.  .+.+. +.++++.+ .+.++.++-|-+        |+.                      
T Consensus        32 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~--------~~~----------------------   81 (127)
T 3h79_A           32 PEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDG--------EKY----------------------   81 (127)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEET--------TTC----------------------
T ss_pred             CCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEc--------ccc----------------------
Confidence            389999999999998874  36677 77776533 123444444421        211                      


Q ss_pred             chHHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391          409 EPAVVKYAKEVWKFSKKAILVPVDPQGRI  437 (691)
Q Consensus       409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv  437 (691)
                           +.+.+.|++++.|+++++.+.|+.
T Consensus        82 -----~~l~~~~~v~~~Pt~~~~~~g~~~  105 (127)
T 3h79_A           82 -----PDVIERMRVSGFPTMRYYTRIDKQ  105 (127)
T ss_dssp             -----HHHHHHTTCCSSSEEEEECSSCSS
T ss_pred             -----HhHHHhcCCccCCEEEEEeCCCCC
Confidence                 235667999999999999887764

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=95.98  E-value=0.0091  Score=53.42  Aligned_cols=74  Identities=16%  Similarity=0.103  Sum_probs=49.8

Q ss_pred             ecCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391          332 LRRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII  408 (691)
Q Consensus       332 L~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i  408 (691)
                      +++ .|+++|.+.||++|..  +.|. ++++.    +  +.++.|.+-+      +.+....                  
T Consensus        30 ~~~-~vlv~F~a~wC~~C~~~~p~l~~l~~~~----~--v~~~~vd~~~------~~~~~~~------------------   78 (135)
T 3emx_A           30 LQG-DAILAVYSKTCPHCHRDWPQLIQASKEV----D--VPIVMFIWGS------LIGEREL------------------   78 (135)
T ss_dssp             HTS-SEEEEEEETTCHHHHHHHHHHHHHHTTC----C--SCEEEEEECT------TCCHHHH------------------
T ss_pred             hCC-cEEEEEECCcCHhhhHhChhHHHHHHHC----C--CEEEEEECCC------chhhhhh------------------
Confidence            344 7999999999988753  5555 55443    2  7778876522      2222111                  


Q ss_pred             chHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          409 EPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                        ...+.+.+.|++++.|++++++ +|+++.
T Consensus        79 --d~~~~l~~~~~v~~~Pt~~~~~-~G~~v~  106 (135)
T 3emx_A           79 --SAARLEMNKAGVEGTPTLVFYK-EGRIVD  106 (135)
T ss_dssp             --HHHHHHHHHHTCCSSSEEEEEE-TTEEEE
T ss_pred             --hhhHHHHHHcCCceeCeEEEEc-CCEEEE
Confidence              2234567789999999999999 998764

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=95.98  E-value=0.012  Score=50.97  Aligned_cols=67  Identities=12%  Similarity=0.000  Sum_probs=45.9

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+++|.+.||++|.-  +.|. ++++.+     ++.++.|.+       +++                        
T Consensus        36 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-----~~~~~~vd~-------~~~------------------------   79 (124)
T 1faa_A           36 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-----DVIFLKLDC-------NQE------------------------   79 (124)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEEC-------SST------------------------
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC-----CCEEEEEec-------Ccc------------------------
Confidence            6899999999999988753  5677 766543     355555532       111                        


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                         .+.+.+.|++++.|++++. ++|+++.
T Consensus        80 ---~~~~~~~~~v~~~Pt~~~~-~~G~~~~  105 (124)
T 1faa_A           80 ---NKTLAKELGIRVVPTFKIL-KENSVVG  105 (124)
T ss_dssp             ---THHHHHHHCCSSSSEEEEE-ETTEEEE
T ss_pred             ---hHHHHHHcCCCeeeEEEEE-eCCcEEE
Confidence               1234567899999996655 8998764

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=95.94  E-value=0.014  Score=56.00  Aligned_cols=68  Identities=9%  Similarity=-0.154  Sum_probs=50.1

Q ss_pred             ecCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391          332 LRRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII  408 (691)
Q Consensus       332 L~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i  408 (691)
                      .+||.|+++|.+.||++|.-  +.+. ++++++    +++.++.|-+        |..                      
T Consensus       112 ~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~----~~v~~~~vd~--------~~~----------------------  157 (210)
T 3apq_A          112 NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVD----GLLRIGAVNC--------GDD----------------------  157 (210)
T ss_dssp             HHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTB----TTBEEEEEET--------TTC----------------------
T ss_pred             ccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhc----CceEEEEEEC--------Ccc----------------------
Confidence            57999999999999988743  6677 777764    3466666643        211                      


Q ss_pred             chHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          409 EPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                           ..+.+.|++++.|+++++ ++|+++.
T Consensus       158 -----~~l~~~~~v~~~Pt~~~~-~~G~~~~  182 (210)
T 3apq_A          158 -----RMLCRMKGVNSYPSLFIF-RSGMAAV  182 (210)
T ss_dssp             -----HHHHHHTTCCSSSEEEEE-CTTSCCE
T ss_pred             -----HHHHHHcCCCcCCeEEEE-ECCCcee
Confidence                 125566899999999999 9998743

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=95.90  E-value=0.02  Score=51.01  Aligned_cols=66  Identities=14%  Similarity=0.069  Sum_probs=47.0

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      ++.|+|+|.+.||++|..  +.|. ++++++    +++.++.|.+        |.+                        
T Consensus        50 ~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~----~~v~~~~vd~--------~~~------------------------   93 (140)
T 1v98_A           50 APLTLVDFFAPWCGPCRLVSPILEELARDHA----GRLKVVKVNV--------DEH------------------------   93 (140)
T ss_dssp             CCEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTEEEEEEET--------TTC------------------------
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHHcc----CceEEEEEEC--------CCC------------------------
Confidence            333999999999988743  5566 666653    3477777654        211                        


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                         ..+.+.|++++.|+++++ ++|+++.
T Consensus        94 ---~~l~~~~~v~~~Pt~~~~-~~G~~~~  118 (140)
T 1v98_A           94 ---PGLAARYGVRSVPTLVLF-RRGAPVA  118 (140)
T ss_dssp             ---HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ---HHHHHHCCCCccCEEEEE-eCCcEEE
Confidence               125567899999999999 7999864

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=95.83  E-value=0.025  Score=54.32  Aligned_cols=70  Identities=10%  Similarity=-0.018  Sum_probs=52.3

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .+|.|+++|.+.||++|..  +.+. +.++++.+ ..++.++.|-+        +++                       
T Consensus       146 ~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~v~~~~vd~--------~~~-----------------------  193 (241)
T 3idv_A          146 DADIILVEFYAPWCGHCKKLAPEYEKAAKELSKR-SPPIPLAKVDA--------TAE-----------------------  193 (241)
T ss_dssp             HCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTS-SSCCCEEEEET--------TTC-----------------------
T ss_pred             cCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhcc-CCcEEEEEEEC--------CCC-----------------------
Confidence            4789999999999988743  6788 88888754 45677777743        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          +.+.+.|++++.|+++++. +|+.+.
T Consensus       194 ----~~l~~~~~v~~~Pt~~~~~-~g~~~~  218 (241)
T 3idv_A          194 ----TDLAKRFDVSGYPTLKIFR-KGRPYD  218 (241)
T ss_dssp             ----HHHHHHTTCCSSSEEEEEE-TTEEEE
T ss_pred             ----HHHHHHcCCcccCEEEEEE-CCeEEE
Confidence                1266779999999999997 577653

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=95.82  E-value=0.069  Score=55.07  Aligned_cols=150  Identities=10%  Similarity=0.097  Sum_probs=82.9

Q ss_pred             CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      .+.++++|.+.||++++  .+.+. +.++++.    .+-+++|   |       .+...                     
T Consensus       135 ~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~----~i~f~~v---d-------~~~~~---------------------  179 (361)
T 3uem_A          135 IKTHILLFLPKSVSDYDGKLSNFKTAAESFKG----KILFIFI---D-------SDHTD---------------------  179 (361)
T ss_dssp             CCEEEEEECCSSSSSHHHHHHHHHHHHGGGTT----TCEEEEE---C-------TTSGG---------------------
T ss_pred             CCcEEEEEEeCCchhHHHHHHHHHHHHHHccC----ceEEEEe---c-------CChHH---------------------
Confidence            35688999999998764  24566 6666652    3444444   2       11100                     


Q ss_pred             HHHHHHHHhhCcCC--ceEEEEeCCCCceecccHHHHHHHhCcccccCChhhHHHHHhhh----------------ccch
Q 044391          411 AVVKYAKEVWKFSK--KAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAE----------------SWRL  472 (691)
Q Consensus       411 ~~~r~ike~f~~~~--iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~e~L~~~e----------------~w~l  472 (691)
                        -+.+.+.|++++  .|++++++..+...         .|....-++|.+.+.+.-++-                .|.-
T Consensus       180 --~~~~~~~fgi~~~~~P~~~~~~~~~~~~---------ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~~  248 (361)
T 3uem_A          180 --NQRILEFFGLKKEECPAVRLITLEEEMT---------KYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDK  248 (361)
T ss_dssp             --GHHHHHHTTCCTTTCSEEEEEECC--CC---------EECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTTTTT
T ss_pred             --HHHHHHHcCCCccCCccEEEEEcCCccc---------ccCCCccccCHHHHHHHHHHHhcCCCcccccCCCCCccccc
Confidence              123445689987  99999998744321         122223355655555443321                1111


Q ss_pred             hhhcccCchhhhhhh-cCCcEEEEEccCCh-hHHHHHHHHHHHHHHHhCC--ceeeEEecc
Q 044391          473 ELLIDDIDATILEWM-KEERYICLYGGGDI-EWIRRFTTSAKAVARAAQI--NLGMAYVGK  529 (691)
Q Consensus       473 elLvd~id~~I~~~i-~egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~~--~~E~v~Vgk  529 (691)
                      +.+..=.+......+ ..+|.++++|.+.+ ..|+++.+.+.++++....  .+-++.|-.
T Consensus       249 ~~v~~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~  309 (361)
T 3uem_A          249 QPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDS  309 (361)
T ss_dssp             SSSEEECTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEET
T ss_pred             CCcEEeecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEEC
Confidence            111100011222233 48999999999933 3349999999999887433  355554443

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=95.72  E-value=0.031  Score=53.41  Aligned_cols=69  Identities=9%  Similarity=-0.032  Sum_probs=48.5

Q ss_pred             CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      ++.++++|.+.||++|.  .+.|. ++++.+.+.+.++.++.|.+        |+.                        
T Consensus       134 ~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~--------~~~------------------------  181 (226)
T 1a8l_A          134 QDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEA--------IEY------------------------  181 (226)
T ss_dssp             SCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEG--------GGC------------------------
T ss_pred             CCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEc--------ccC------------------------
Confidence            55669999999998874  46788 88887633234577766643        211                        


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                         ..+.+.|++++.|+++++ ++|+.+
T Consensus       182 ---~~l~~~~~v~~~Pt~~~~-~~G~~~  205 (226)
T 1a8l_A          182 ---PEWADQYNVMAVPKIVIQ-VNGEDR  205 (226)
T ss_dssp             ---HHHHHHTTCCSSCEEEEE-ETTEEE
T ss_pred             ---HHHHHhCCCcccCeEEEE-eCCcee
Confidence               124567899999998887 588765

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=95.45  E-value=0.021  Score=50.16  Aligned_cols=75  Identities=9%  Similarity=0.111  Sum_probs=49.5

Q ss_pred             cCcEEEEEEecC-------CCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeee
Q 044391          333 RRKHVLLLISSL-------DLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTV  402 (691)
Q Consensus       333 ~gK~VlL~fSal-------~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAV  402 (691)
                      .||.|+++|.+.       ||++|..  +.|. ++++++    +++.++.|.+ +      +. . .         |.  
T Consensus        23 ~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~----~~~~~~~vd~-~------~~-~-~---------~~--   78 (123)
T 1wou_A           23 NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS----EGCVFIYCQV-G------EK-P-Y---------WK--   78 (123)
T ss_dssp             TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCC----TTEEEEEEEC-C------CH-H-H---------HH--
T ss_pred             CCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcC----CCcEEEEEEC-C------Cc-h-h---------hh--
Confidence            489999999999       9988753  5676 666543    3577777765 1      11 1 1         21  


Q ss_pred             cCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          403 QHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       403 p~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                         +. .    ..+.+.|+++++|+++++++.+++..
T Consensus        79 ---d~-~----~~~~~~~~i~~~Pt~~~~~~~~~~~g  107 (123)
T 1wou_A           79 ---DP-N----NDFRKNLKVTAVPTLLKYGTPQKLVE  107 (123)
T ss_dssp             ---CT-T----CHHHHHHCCCSSSEEEETTSSCEEEG
T ss_pred             ---ch-h----HHHHHHCCCCeeCEEEEEcCCceEec
Confidence               10 1    12445599999999999998555543

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=95.43  E-value=0.014  Score=56.76  Aligned_cols=67  Identities=12%  Similarity=0.092  Sum_probs=48.7

Q ss_pred             cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .+|.|+|+|.+.||++|.  .+.|. ++++++    +++.++.|.+        |..                  ++   
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~~v~~~~vd~--------d~~------------------~~---   75 (222)
T 3dxb_A           29 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNI--------DQN------------------PG---   75 (222)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEET--------TTC------------------TT---
T ss_pred             cCCEEEEEEECCcCHHHHHHHHHHHHHHHHhc----CCcEEEEEEC--------CCC------------------HH---
Confidence            489999999999998874  36677 877765    3377777754        211                  11   


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                            +.+.|++++.|+++++. +|+++.
T Consensus        76 ------l~~~~~v~~~Pt~~~~~-~G~~~~   98 (222)
T 3dxb_A           76 ------TAPKYGIRGIPTLLLFK-NGEVAA   98 (222)
T ss_dssp             ------TGGGGTCCSBSEEEEEE-TTEEEE
T ss_pred             ------HHHHcCCCcCCEEEEEE-CCeEEE
Confidence                  23568999999999995 888764

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=95.37  E-value=0.017  Score=55.79  Aligned_cols=81  Identities=12%  Similarity=0.094  Sum_probs=49.6

Q ss_pred             cceecCcEEEEEEecCCCChhhhH---HH--H-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeee
Q 044391          329 IEVLRRKHVLLLISSLDLSDEEIL---VL--H-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTV  402 (691)
Q Consensus       329 Is~L~gK~VlL~fSal~~~~~e~~---~L--~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAV  402 (691)
                      ...-+||.|+|.|.+.||++|...   .+  . +-+.+++      .+|+|.+ |.     |+..+ ....         
T Consensus        34 ~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~------~fv~ikV-D~-----de~~~-l~~~---------   91 (173)
T 3ira_A           34 KARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNE------AFVSIKV-DR-----EERPD-IDNI---------   91 (173)
T ss_dssp             HHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHH------HCEEEEE-ET-----TTCHH-HHHH---------
T ss_pred             HHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHh------cCceeee-CC-----cccCc-HHHH---------
Confidence            334569999999999999888641   11  2 3333332      2466664 42     22111 1110         


Q ss_pred             cCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          403 QHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       403 p~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                               -..++...+++.++|++|+++|+|+++..
T Consensus        92 ---------y~~~~q~~~gv~g~Pt~v~l~~dG~~v~~  120 (173)
T 3ira_A           92 ---------YMTVCQIILGRGGWPLNIIMTPGKKPFFA  120 (173)
T ss_dssp             ---------HHHHHHHHHSCCCSSEEEEECTTSCEEEE
T ss_pred             ---------HHHHHHHHcCCCCCcceeeECCCCCceee
Confidence                     11123334799999999999999999864

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=95.23  E-value=0.032  Score=50.11  Aligned_cols=63  Identities=11%  Similarity=0.051  Sum_probs=43.4

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      ||.|+++|.+.||++|..  +.|. +.++.     .+  +.|+-+ |.     |+.           |            
T Consensus        30 ~~~vvv~f~a~wC~~C~~~~p~l~~la~~~-----~~--v~~~~v-d~-----~~~-----------~------------   73 (135)
T 2dbc_A           30 DLWVVIHLYRSSVPMCLVVNQHLSVLARKF-----PE--TKFVKA-IV-----NSC-----------I------------   73 (135)
T ss_dssp             SCEEEEEECCTTCHHHHHHHHHHHHHHHHC-----SS--EEEEEE-CC-----SSS-----------C------------
T ss_pred             CCEEEEEEECCCChHHHHHHHHHHHHHHHC-----CC--cEEEEE-Eh-----hcC-----------c------------
Confidence            689999999999988853  5566 55543     22  555544 21     211           0            


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                             +.|++++.|+++++. +|+++..
T Consensus        74 -------~~~~i~~~Pt~~~~~-~G~~v~~   95 (135)
T 2dbc_A           74 -------EHYHDNCLPTIFVYK-NGQIEGK   95 (135)
T ss_dssp             -------SSCCSSCCSEEEEES-SSSCSEE
T ss_pred             -------ccCCCCCCCEEEEEE-CCEEEEE
Confidence                   358999999999997 9988753

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=95.05  E-value=0.045  Score=61.02  Aligned_cols=69  Identities=6%  Similarity=-0.111  Sum_probs=52.4

Q ss_pred             CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      ||.|+++|.+.||++|.  .+.+. ++++++.. +..+.++-|-+        |.++                       
T Consensus        30 ~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~-~~~v~~~~VD~--------d~d~-----------------------   77 (519)
T 3t58_A           30 SSAWAVEFFASWCGHAIAFAPTWKELANDVKDW-RPALNLAVLDC--------AEET-----------------------   77 (519)
T ss_dssp             SSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGG-TTTEEEEEEET--------TSGG-----------------------
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCc-CCcEEEEEEEC--------Cccc-----------------------
Confidence            59999999999998874  47899 99998753 45688887754        2110                       


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCC---CCc
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDP---QGR  436 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~p---qGk  436 (691)
                        -+.+.+.|++++.|+++++++   +|+
T Consensus        78 --~~~l~~~~~V~~~PTl~~f~~g~~~G~  104 (519)
T 3t58_A           78 --NSAVCREFNIAGFPTVRFFQAFTKNGS  104 (519)
T ss_dssp             --GHHHHHHTTCCSBSEEEEECTTCCSCC
T ss_pred             --cHHHHHHcCCcccCEEEEEcCcccCCC
Confidence              124567799999999999998   665

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=94.76  E-value=0.15  Score=52.25  Aligned_cols=153  Identities=7%  Similarity=-0.020  Sum_probs=80.0

Q ss_pred             CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|+++|.+.||++|.  .+.+. ++++++    +++.++.|-+        |.++                       
T Consensus        35 ~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~----~~~~~~~v~~--------d~~~-----------------------   79 (298)
T 3ed3_A           35 NYTSLVEFYAPWCGHCKKLSSTFRKAAKRLD----GVVQVAAVNC--------DLNK-----------------------   79 (298)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTSEEEEEET--------TSTT-----------------------
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcc----CCcEEEEEEc--------cCcc-----------------------
Confidence            78899999999998874  36677 777764    3488888865        2111                       


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCc-ccccCChhh-HHHHHhhhccchhhh---cccC-c-hhh
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGN-LAFPFSAEK-EAALWKAESWRLELL---IDDI-D-ATI  483 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~-~AFPFT~~r-~e~L~~~e~w~lelL---vd~i-d-~~I  483 (691)
                        -+.+.+.|++++.|+++++.+.+.+....+..-....|. ...+|+-.| .++|.   .|-.+.+   +..+ + ..+
T Consensus        80 --~~~l~~~~~I~~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~---~fl~~~~~~~v~~i~~~~~l  154 (298)
T 3ed3_A           80 --NKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIV---DFSLSRIRSYVKKFVRIDTL  154 (298)
T ss_dssp             --THHHHHHTTCCBSSEEEEEECCCC-------------CCCEEEECCSCCSHHHHH---HHHHTTCCCCEEECSCGGGH
T ss_pred             --CHHHHHhCCCCccceEEEEECCceeecccccccccccccccceeecCCcCHHHHH---HHHHHhcccccEEcCCHHHH
Confidence              134566799999999999987543333333221122221 123333222 11111   2211111   1111 1 124


Q ss_pred             hhhhcC-CcEEEEEccCChhHHHHHHHHHHHHHHHhCCceeeEEeccc
Q 044391          484 LEWMKE-ERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKN  530 (691)
Q Consensus       484 ~~~i~e-gK~I~LYgG~D~~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkd  530 (691)
                      ..+++. ++.+.++|+++..=    .+.+.++|......+..+++..+
T Consensus       155 ~~~l~~~~~~~vi~fs~~~~~----~~~f~~~A~~~~~~~~F~~v~~~  198 (298)
T 3ed3_A          155 GSLLRKSPKLSVVLFSKQDKI----SPVYKSIALDWLGKFDFYSISNK  198 (298)
T ss_dssp             HHHHTSCSSEEEEEEESSSSC----CHHHHHHHHHTBTTEEEEEEEGG
T ss_pred             HHHHhcCCceEEEEEcCCCcc----hHHHHHHHHHhhcCcEEEEEcch
Confidence            456664 56777777654431    23555666665556666666543

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=94.66  E-value=0.051  Score=46.53  Aligned_cols=67  Identities=7%  Similarity=-0.105  Sum_probs=46.9

Q ss_pred             cCcEEEEEEecCCCChhh--hHHHH-HHHHhhcc-CCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391          333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAR-EEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII  408 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~-~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i  408 (691)
                      ++|.|+++|.+.||++|.  .+.|. ++++++.. ...++.++.|-+        |+.           |         +
T Consensus        24 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~--------~~~-----------~---------~   75 (121)
T 2djj_A           24 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDA--------TAN-----------D---------V   75 (121)
T ss_dssp             TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEET--------TTS-----------C---------C
T ss_pred             CCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEEC--------ccc-----------c---------c
Confidence            689999999999998874  36788 88887631 012566666543        210           0         1


Q ss_pred             chHHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391          409 EPAVVKYAKEVWKFSKKAILVPVDPQGRI  437 (691)
Q Consensus       409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv  437 (691)
                              .+  ++++.|+++++++.|++
T Consensus        76 --------~~--~v~~~Pt~~~~~~~~~~   94 (121)
T 2djj_A           76 --------PD--EIQGFPTIKLYPAGAKG   94 (121)
T ss_dssp             --------SS--CCSSSSEEEEECSSCTT
T ss_pred             --------cc--ccCcCCeEEEEeCcCCC
Confidence                    11  88999999999998883

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=93.67  E-value=0.0057  Score=50.48  Aligned_cols=67  Identities=12%  Similarity=0.130  Sum_probs=45.0

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .+|.|+++|.+.||+.|..  +.|. +.++++    .++.++.|.+        |++                       
T Consensus        18 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~--------~~~-----------------------   62 (106)
T 2yj7_A           18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYE----GKVKVVKVNV--------DEN-----------------------   62 (106)
Confidence            3789999999999988753  4566 665543    2355554432        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          ..+.+.|++++.|+++++ ++|+++.
T Consensus        63 ----~~~~~~~~v~~~Pt~~~~-~~g~~~~   87 (106)
T 2yj7_A           63 ----PNTAAQYGIRSIPTLLLF-KNGQVVD   87 (106)
Confidence                123455789999999999 8998753

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=94.64  E-value=0.04  Score=53.49  Aligned_cols=100  Identities=7%  Similarity=-0.003  Sum_probs=64.8

Q ss_pred             CCceeeccee-cCcEEEE-EEecCCCChh---hhHHHH-HHHHhhccCCCCe-eEEEEecccCCCCCChhhHHHHHHHhc
Q 044391          323 SRTRVNIEVL-RRKHVLL-LISSLDLSDE---EILVLH-LYREHKAREEFDY-AIVWLPIVDRSIAWDEGYRQKFEQLQA  395 (691)
Q Consensus       323 ~~~kV~Is~L-~gK~VlL-~fSal~~~~~---e~~~L~-iY~~lk~~~~~~f-EIVwIpiVd~s~~W~D~d~~~F~~~~~  395 (691)
                      +-+.|+++++ +||.|.| +|=+.|||.|   |++-+. .|++++++   ++ +||=||. |     +-...+.|-+-..
T Consensus        35 ~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~---g~d~VigIS~-D-----~~~~~~~f~~~~~  105 (176)
T 4f82_A           35 GPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAA---GIDEIWCVSV-N-----DAFVMGAWGRDLH  105 (176)
T ss_dssp             EEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT---TCCEEEEEES-S-----CHHHHHHHHHHTT
T ss_pred             CceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhC---CCCEEEEEeC-C-----CHHHHHHHHHHhC
Confidence            3467999996 9996655 5667788776   566788 99999854   57 9999996 4     2345667765332


Q ss_pred             -C--CCeeeecCCCCCchHHHHHHHHhhCcC-----------CceEEEEeCCCCceeccc
Q 044391          396 -M--MPWYTVQHPTIIEPAVVKYAKEVWKFS-----------KKAILVPVDPQGRILNQN  441 (691)
Q Consensus       396 -~--MPWyAVp~~d~i~~~~~r~ike~f~~~-----------~iP~LVvL~pqGkv~~~N  441 (691)
                       .  .|-++=  ++   .+..    +.|++.           ..|...|+ ++|++....
T Consensus       106 l~~~f~lLsD--~~---~~va----~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~  155 (176)
T 4f82_A          106 TAGKVRMMAD--GS---AAFT----HALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLA  155 (176)
T ss_dssp             CTTTSEEEEC--TT---CHHH----HHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEE
T ss_pred             CCCCceEEEc--Cc---hHHH----HHhCCCccccccCCCcccccEEEEE-cCCEEEEEE
Confidence             1  333332  22   2333    335542           25778888 999997654

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=94.57  E-value=0.05  Score=50.19  Aligned_cols=65  Identities=12%  Similarity=0.183  Sum_probs=38.5

Q ss_pred             CcEEEEEEecCC--CChhh--hHHHH-HHHHhhccCCCCee--EEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCC
Q 044391          334 RKHVLLLISSLD--LSDEE--ILVLH-LYREHKAREEFDYA--IVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPT  406 (691)
Q Consensus       334 gK~VlL~fSal~--~~~~e--~~~L~-iY~~lk~~~~~~fE--IVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d  406 (691)
                      .+.++++|++.|  |++|.  .+.|. ++++.     +++.  ++-|-+        |+.                    
T Consensus        34 ~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-----~~v~~~~~~Vd~--------d~~--------------------   80 (142)
T 2es7_A           34 VGDGVILLSSDPRRTPEVSDNPVMIAELLREF-----PQFDWQVAVADL--------EQS--------------------   80 (142)
T ss_dssp             CCSEEEEECCCSCC----CCHHHHHHHHHHTC-----TTSCCEEEEECH--------HHH--------------------
T ss_pred             CCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-----cccceeEEEEEC--------CCC--------------------
Confidence            355888999887  76764  36666 66654     2355  555532        211                    


Q ss_pred             CCchHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          407 IIEPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       407 ~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                             ..+.+.|+++++|+++++ .+|+.+.
T Consensus        81 -------~~la~~~~V~~iPT~~~f-k~G~~v~  105 (142)
T 2es7_A           81 -------EAIGDRFNVRRFPATLVF-TDGKLRG  105 (142)
T ss_dssp             -------HHHHHTTTCCSSSEEEEE-SCC----
T ss_pred             -------HHHHHhcCCCcCCeEEEE-eCCEEEE
Confidence                   135667999999999999 8998764

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=94.48  E-value=0.035  Score=44.43  Aligned_cols=61  Identities=13%  Similarity=0.104  Sum_probs=43.2

Q ss_pred             cEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchH
Q 044391          335 KHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPA  411 (691)
Q Consensus       335 K~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~  411 (691)
                      +.++++|++.||++|.  .+.|. ++++.+    ++++++.|.+        |++                  ++     
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~vd~--------~~~------------------~~-----   47 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMP----DAVEVEYINV--------MEN------------------PQ-----   47 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCS----SSEEEEEEES--------SSS------------------CC-----
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcC----CceEEEEEEC--------CCC------------------HH-----
Confidence            4678999999998874  36677 776653    4588888865        211                  11     


Q ss_pred             HHHHHHHhhCcCCceEEEEeCCCCce
Q 044391          412 VVKYAKEVWKFSKKAILVPVDPQGRI  437 (691)
Q Consensus       412 ~~r~ike~f~~~~iP~LVvL~pqGkv  437 (691)
                          +.+.|++++.|++++   +|++
T Consensus        48 ----~~~~~~v~~~Pt~~~---~G~~   66 (85)
T 1fo5_A           48 ----KAMEYGIMAVPTIVI---NGDV   66 (85)
T ss_dssp             ----TTTSTTTCCSSEEEE---TTEE
T ss_pred             ----HHHHCCCcccCEEEE---CCEE
Confidence                235589999999999   8886

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=94.43  E-value=0.0096  Score=51.66  Aligned_cols=66  Identities=9%  Similarity=0.080  Sum_probs=46.1

Q ss_pred             cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+++|.+.||++|.  .+.|. ++++.+     ++.++.|.+        |+.                       
T Consensus        35 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----~v~~~~v~~--------~~~-----------------------   78 (130)
T 1wmj_A           35 AGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-----GAVFLKVDV--------DEL-----------------------   78 (130)
T ss_dssp             TTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-----TBCCEECCT--------TTS-----------------------
T ss_pred             cCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-----CCEEEEEec--------cch-----------------------
Confidence            489999999999998874  46677 776643     355555532        211                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          ..+.+.|++++.|+++++ ++|+++.
T Consensus        79 ----~~~~~~~~v~~~Pt~~~~-~~g~~~~  103 (130)
T 1wmj_A           79 ----KEVAEKYNVEAMPTFLFI-KDGAEAD  103 (130)
T ss_dssp             ----GGGHHHHTCCSSCCCCBC-TTTTCCB
T ss_pred             ----HHHHHHcCCCccceEEEE-eCCeEEE
Confidence                123456899999998887 8998764

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=94.37  E-value=0.11  Score=48.97  Aligned_cols=70  Identities=14%  Similarity=0.238  Sum_probs=45.1

Q ss_pred             CcEEEEEEecCCCChhhhH---HHH---HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCC
Q 044391          334 RKHVLLLISSLDLSDEEIL---VLH---LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTI  407 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~~---~L~---iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~  407 (691)
                      ||.|+|+|.+.||..|...   ++.   |-+.+++    +|  |+|-+ |.    ++.                      
T Consensus        42 ~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~----~f--v~v~~-d~----~~~----------------------   88 (153)
T 2dlx_A           42 NKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE----HF--IFWQV-YH----DSE----------------------   88 (153)
T ss_dssp             TCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH----TE--EEEEE-ES----SSH----------------------
T ss_pred             CCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc----Ce--EEEEE-ec----CCH----------------------
Confidence            8999999999999887432   221   4444433    24  44433 21    111                      


Q ss_pred             CchHHHHHHHHhhCcCCceEEEEeCCC-Cceecc
Q 044391          408 IEPAVVKYAKEVWKFSKKAILVPVDPQ-GRILNQ  440 (691)
Q Consensus       408 i~~~~~r~ike~f~~~~iP~LVvL~pq-Gkv~~~  440 (691)
                         .. +.+.+.|++.+.|+++++||+ |+.+..
T Consensus        89 ---~~-~~l~~~y~v~~~P~~~fld~~~G~~l~~  118 (153)
T 2dlx_A           89 ---EG-QRYIQFYKLGDFPYVSILDPRTGQKLVE  118 (153)
T ss_dssp             ---HH-HHHHHHHTCCSSSEEEEECTTTCCCCEE
T ss_pred             ---hH-HHHHHHcCCCCCCEEEEEeCCCCcEeee
Confidence               11 234467899999999999999 877643

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=94.21  E-value=0.04  Score=44.11  Aligned_cols=59  Identities=12%  Similarity=0.004  Sum_probs=42.4

Q ss_pred             EEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHHH
Q 044391          337 VLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVV  413 (691)
Q Consensus       337 VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~~  413 (691)
                      ++++|++.||++|.  .+.|. +.++..    ++++++.|.+        |++.                          
T Consensus         4 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~vd~--------~~~~--------------------------   45 (85)
T 1nho_A            4 NIEVFTSPTCPYCPMAIEVVDEAKKEFG----DKIDVEKIDI--------MVDR--------------------------   45 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHC----SSCCEEEECT--------TTCG--------------------------
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhc----CCeEEEEEEC--------CCCH--------------------------
Confidence            57889999998874  36677 777664    3588888864        2111                          


Q ss_pred             HHHHHhhCcCCceEEEEeCCCCce
Q 044391          414 KYAKEVWKFSKKAILVPVDPQGRI  437 (691)
Q Consensus       414 r~ike~f~~~~iP~LVvL~pqGkv  437 (691)
                       .+.+.|++++.|++++   +|++
T Consensus        46 -~~~~~~~v~~~Pt~~~---~G~~   65 (85)
T 1nho_A           46 -EKAIEYGLMAVPAIAI---NGVV   65 (85)
T ss_dssp             -GGGGGTCSSCSSEEEE---TTTE
T ss_pred             -HHHHhCCceeeCEEEE---CCEE
Confidence             1335689999999999   8886

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=94.14  E-value=0.15  Score=47.82  Aligned_cols=68  Identities=15%  Similarity=0.023  Sum_probs=47.0

Q ss_pred             cEEEEEEecCCC--ChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchH
Q 044391          335 KHVLLLISSLDL--SDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPA  411 (691)
Q Consensus       335 K~VlL~fSal~~--~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~  411 (691)
                      +.|+++|.|.||  +||..  +. +.++|.+..++++.|+-|=+        |+.                         
T Consensus        34 ~~vlVdF~A~wCr~gpCk~--iaPvleela~e~~~~v~~~KVdv--------De~-------------------------   78 (137)
T 2qsi_A           34 KIVVLFFRGDAVRFPEAAD--LAVVLPELINAFPGRLVAAEVAA--------EAE-------------------------   78 (137)
T ss_dssp             SEEEEEECCCTTTCTTHHH--HHHHHHHHHHTSTTTEEEEEECG--------GGH-------------------------
T ss_pred             CcEEEEEeCCccCCCchhh--HHhHHHHHHHHccCCcEEEEEEC--------CCC-------------------------
Confidence            489999999999  78753  33 44554433345688887732        321                         


Q ss_pred             HHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          412 VVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       412 ~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                        +.|.++|+++++|+|+++ -+|+.+..
T Consensus        79 --~~la~~ygV~siPTlilF-kdG~~v~~  104 (137)
T 2qsi_A           79 --RGLMARFGVAVCPSLAVV-QPERTLGV  104 (137)
T ss_dssp             --HHHHHHHTCCSSSEEEEE-ECCEEEEE
T ss_pred             --HHHHHHcCCccCCEEEEE-ECCEEEEE
Confidence              235566899999999999 57877754

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=94.04  E-value=0.38  Score=55.09  Aligned_cols=147  Identities=8%  Similarity=-0.086  Sum_probs=84.1

Q ss_pred             CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      ++.++++|.+.||++|.  .+.+. +.++++    ++..+++|-.          +.                       
T Consensus       563 ~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~----~~v~~~~vd~----------~~-----------------------  605 (780)
T 3apo_A          563 DEVWMVDFYSPWSHPSQVLMPEWKRMARTLT----GLINVGSVDC----------GQ-----------------------  605 (780)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHHT----TTSEEEEEET----------TT-----------------------
T ss_pred             CCeEEEEEECCCCHHHHHhhHHHHHHHHHhh----CCeEEEEEEC----------cc-----------------------
Confidence            46789999999998764  25566 666665    2355555422          10                       


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCcccccCChhhHHHHHhhhccchhhhcccCch-hhhh-hhc
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDIDA-TILE-WMK  488 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~e~L~~~e~w~lelLvd~id~-~I~~-~i~  488 (691)
                        -+.+.+.+++++.|++++..+.++.-. +..    .|  ++.+++.+.+.+.-.+..  ...+. .++. .... ..+
T Consensus       606 --~~~l~~~~~v~~~Pti~~~~~~~~~~~-~~~----~y--~g~~~~~~~l~~fi~~~~--~~~v~-~l~~~~~~~~~~~  673 (780)
T 3apo_A          606 --YHSFCTQENVQRYPEIRFYPQKSSKAY-QYH----SY--NGWNRDAYSLRSWGLGFL--PQASI-DLTPQTFNEKVLQ  673 (780)
T ss_dssp             --THHHHHHTTCCSSSEEEEECCCSSSCC-SCE----EC--CCSCCSHHHHHHHHHTTS--CCCSE-EECHHHHHHHTTT
T ss_pred             --hHHHHHHcCCCCCCeEEEEcCCCcCcc-chh----hc--CCCCCCHHHHHHHHhhhc--ccccc-cCCHHHHHHHHhc
Confidence              012456689999999999987543210 000    00  122344433333222211  11111 1222 2222 245


Q ss_pred             CCcEEEEEccCChhH---HHHHHHHHHHHHHHhCCceeeEEecccC
Q 044391          489 EERYICLYGGGDIEW---IRRFTTSAKAVARAAQINLGMAYVGKNN  531 (691)
Q Consensus       489 egK~I~LYgG~D~~W---ir~FT~~~~~Ik~~a~~~~E~v~Vgkdn  531 (691)
                      .||.+.++|.+  .|   |+++.+.+.++++..+..+.++.|.-+.
T Consensus       674 ~~~~v~v~F~a--~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~  717 (780)
T 3apo_A          674 GKTHWVVDFYA--PWSGPSQNFAPEFELLARMIKGKVRAGKVDCQA  717 (780)
T ss_dssp             CSSCEEEEEEC--TTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT
T ss_pred             CCCeEEEEEEC--CCCHHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence            78999999999  66   5999999999988754466666665553

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=93.71  E-value=0.14  Score=48.02  Aligned_cols=70  Identities=9%  Similarity=-0.024  Sum_probs=47.4

Q ss_pred             cCcEEEEEEecCC--CChhhhHHHH-HHHHhhccCCCC-eeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391          333 RRKHVLLLISSLD--LSDEEILVLH-LYREHKAREEFD-YAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII  408 (691)
Q Consensus       333 ~gK~VlL~fSal~--~~~~e~~~L~-iY~~lk~~~~~~-fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i  408 (691)
                      .++.|+++|.+.|  |+||.  .+. +.++|.+..+++ +.|+-|=+        |  +                     
T Consensus        33 ~~~~vlVdF~a~~crCgpCk--~iaPvleela~e~~g~~v~~~KVdv--------D--e---------------------   79 (140)
T 2qgv_A           33 QAPDGVVLLSSDPKRTPEVS--DNPVMIGELLHEFPDYTWQVAIADL--------E--Q---------------------   79 (140)
T ss_dssp             TCSSEEEEECCCTTTCTTTT--HHHHHHHHHHTTCTTSCCEEEECCH--------H--H---------------------
T ss_pred             CCCCEEEEEeCCcccCCcHH--HHHhHHHHHHHHcCCCeEEEEEEEC--------C--C---------------------
Confidence            4567899999999  66773  345 666665443445 77776622        2  2                     


Q ss_pred             chHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          409 EPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                          -..|..+|+++++|+|+++ -+|+++..
T Consensus        80 ----~~~lA~~ygV~sIPTlilF-k~G~~v~~  106 (140)
T 2qgv_A           80 ----SEAIGDRFGAFRFPATLVF-TGGNYRGV  106 (140)
T ss_dssp             ----HHHHHHHHTCCSSSEEEEE-ETTEEEEE
T ss_pred             ----CHHHHHHcCCccCCEEEEE-ECCEEEEE
Confidence                2235567899999999999 57887643

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=93.45  E-value=0.85  Score=43.64  Aligned_cols=41  Identities=7%  Similarity=-0.178  Sum_probs=27.8

Q ss_pred             CCcEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeeEEeccc
Q 044391          489 EERYICLYGGGDI-EWIRRFTTSAKAVARAAQINLGMAYVGKN  530 (691)
Q Consensus       489 egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkd  530 (691)
                      .++.++++|.+.+ ..|+++.+.+.++++.. ..+.++.|.-+
T Consensus       135 ~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~-~~v~~~~vd~~  176 (229)
T 2ywm_A          135 DIPIEIWVFVTTSCGYCPSAAVMAWDFALAN-DYITSKVIDAS  176 (229)
T ss_dssp             CSCEEEEEEECTTCTTHHHHHHHHHHHHHHC-TTEEEEEEEGG
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHC-CCeEEEEEECC
Confidence            4556578788822 33499999999998774 35666666554

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=92.94  E-value=0.26  Score=48.97  Aligned_cols=70  Identities=9%  Similarity=-0.014  Sum_probs=46.7

Q ss_pred             eecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCC
Q 044391          331 VLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTI  407 (691)
Q Consensus       331 ~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~  407 (691)
                      .++|+.+++.|.+.||++|.  .+.|. ++.+.+.+...++.++-|-+        +.                  +   
T Consensus       135 ~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~--------~~------------------~---  185 (243)
T 2hls_A          135 SLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEA--------YE------------------N---  185 (243)
T ss_dssp             HCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEET--------TT------------------C---
T ss_pred             HcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEEC--------cc------------------C---
Confidence            46688999999999998884  36677 77766421124566655532        11                  0   


Q ss_pred             CchHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          408 IEPAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       408 i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                            ..+.+.|++++.|++++   +|+++
T Consensus       186 ------~~~~~~~~V~~vPt~~i---~G~~~  207 (243)
T 2hls_A          186 ------PDIADKYGVMSVPSIAI---NGYLV  207 (243)
T ss_dssp             ------HHHHHHTTCCSSSEEEE---TTEEE
T ss_pred             ------HHHHHHcCCeeeCeEEE---CCEEE
Confidence                  12445689999999998   78754

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=92.30  E-value=0.1  Score=52.89  Aligned_cols=89  Identities=11%  Similarity=0.094  Sum_probs=53.4

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +||.|+++|.+.||++|..  +.|. ++++..     +  |.|+-|        |.+..   .                 
T Consensus       132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~-----~--v~f~kV--------d~d~~---~-----------------  176 (245)
T 1a0r_P          132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYP-----M--VKFCKI--------KASNT---G-----------------  176 (245)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT-----T--SEEEEE--------EHHHH---C-----------------
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-----C--CEEEEE--------eCCcH---H-----------------
Confidence            3899999999999999854  5566 665532     2  445544        22211   0                 


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCcccccCChhhHHHHHhh
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKA  467 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~e~L~~~  467 (691)
                            +.+.|++++.|+++++. +|+++.. -.+.....|.   -|+.+.++.+-++
T Consensus       177 ------l~~~~~I~~~PTll~~~-~G~~v~~-~vG~~~~~g~---~~~~e~Le~~L~~  223 (245)
T 1a0r_P          177 ------AGDRFSSDVLPTLLVYK-GGELLSN-FISVTEQLAE---EFFTGDVESFLNE  223 (245)
T ss_dssp             ------CTTSSCTTTCSEEEEEE-TTEEEEE-ETTGGGGSCT---TCCHHHHHHHHHT
T ss_pred             ------HHHHCCCCCCCEEEEEE-CCEEEEE-EeCCcccccc---cccHHHHHHHHHH
Confidence                  12358999999999885 8988743 1221111121   2666665555443

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=91.89  E-value=0.19  Score=49.58  Aligned_cols=90  Identities=9%  Similarity=0.014  Sum_probs=53.4

Q ss_pred             cCcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchH
Q 044391          333 RRKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPA  411 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~  411 (691)
                      +||.|+++|.+.||++|..  +. ++++|.++. .++.++-|.+          + .                +      
T Consensus       119 ~~k~vvV~F~a~wC~~C~~--l~p~l~~la~~~-~~v~f~~vd~----------~-~----------------~------  162 (217)
T 2trc_P          119 KVTTIVVNIYEDGVRGCDA--LNSSLECLAAEY-PMVKFCKIRA----------S-N----------------T------  162 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHH--HHHHHHHHHTTC-TTSEEEEEEH----------H-H----------------H------
T ss_pred             CCcEEEEEEECCCCccHHH--HHHHHHHHHHHC-CCeEEEEEEC----------C-c----------------H------
Confidence            3699999999999999854  23 444444331 2455555432          2 1                0      


Q ss_pred             HHHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCcccccCChhhHHHHHh
Q 044391          412 VVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWK  466 (691)
Q Consensus       412 ~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~e~L~~  466 (691)
                         .+.+.|++++.|+++++. +|+++.. -.+.....|   --|+.+.++.+-.
T Consensus       163 ---~l~~~~~i~~~PTl~~~~-~G~~v~~-~~G~~~~~g---~~~~~~~Le~~L~  209 (217)
T 2trc_P          163 ---GAGDRFSSDVLPTLLVYK-GGELISN-FISVAEQFA---EDFFAADVESFLN  209 (217)
T ss_dssp             ---TCSTTSCGGGCSEEEEEE-TTEEEEE-ETTGGGGSC---SSCCHHHHHHHHH
T ss_pred             ---HHHHHCCCCCCCEEEEEE-CCEEEEE-EeCCcccCc---ccCCHHHHHHHHH
Confidence               022357999999999995 8988743 222223333   2366666655543

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=91.82  E-value=0.14  Score=54.97  Aligned_cols=65  Identities=8%  Similarity=-0.062  Sum_probs=46.3

Q ss_pred             CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      ||.|+++|.+.||++|.  .+.|. ++++++..  .++.++.|-.        +..         .              
T Consensus       370 ~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~--~~v~~~~id~--------~~~---------~--------------  416 (481)
T 3f8u_A          370 NKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKD--PNIVIAKMDA--------TAN---------D--------------  416 (481)
T ss_dssp             TCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTC--SSEEEEEEET--------TSS---------C--------------
T ss_pred             CCcEEEEEecCcChhHHHhhHHHHHHHHHhccC--CCEEEEEEEC--------Cch---------h--------------
Confidence            89999999999998874  47788 88887632  2455555432        110         0              


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCc
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGR  436 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGk  436 (691)
                           +.+.|++++.|+++++++.|+
T Consensus       417 -----~~~~~~v~~~Pt~~~~~~~~~  437 (481)
T 3f8u_A          417 -----VPSPYEVRGFPTIYFSPANKK  437 (481)
T ss_dssp             -----CCTTCCCCSSSEEEEECTTCT
T ss_pred             -----hHhhCCCcccCEEEEEeCCCe
Confidence                 113589999999999998887

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=90.69  E-value=0.89  Score=41.25  Aligned_cols=69  Identities=14%  Similarity=0.089  Sum_probs=50.9

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|+++|.+.||++|..  +.++ ..++      ++..++.|=+        |+                       .+
T Consensus        24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~------~~v~~~~vdV--------de-----------------------~r   66 (112)
T 3iv4_A           24 NKYVFVLKHSETCPISANAYDQFNKFLYE------RDMDGYYLIV--------QQ-----------------------ER   66 (112)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHH------HTCCEEEEEG--------GG-----------------------GH
T ss_pred             CCCEEEEEECCcCHhHHHHHHHHHHHhcc------CCceEEEEEe--------ec-----------------------Cc
Confidence            789999999999999854  4566 5442      3467777733        21                       23


Q ss_pred             HHHHHHHHhhCcCC-ceEEEEeCCCCceecc
Q 044391          411 AVVKYAKEVWKFSK-KAILVPVDPQGRILNQ  440 (691)
Q Consensus       411 ~~~r~ike~f~~~~-iP~LVvL~pqGkv~~~  440 (691)
                      ++-..|.+.|++++ .|+++++ -+|+++-.
T Consensus        67 ~~Sn~IA~~~~V~h~sPq~il~-k~G~~v~~   96 (112)
T 3iv4_A           67 DLSDYIAKKTNVKHESPQAFYF-VNGEMVWN   96 (112)
T ss_dssp             HHHHHHHHHHTCCCCSSEEEEE-ETTEEEEE
T ss_pred             hhhHHHHHHhCCccCCCeEEEE-ECCEEEEE
Confidence            56678999999995 9999999 68887743

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=90.30  E-value=0.73  Score=44.11  Aligned_cols=61  Identities=3%  Similarity=-0.110  Sum_probs=41.7

Q ss_pred             CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      ++.++++|.+.||++|.  .+.+. +.++.     .++.++.|-+        |.+                        
T Consensus       136 ~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~-----~~v~~~~vd~--------~~~------------------------  178 (229)
T 2ywm_A          136 IPIEIWVFVTTSCGYCPSAAVMAWDFALAN-----DYITSKVIDA--------SEN------------------------  178 (229)
T ss_dssp             SCEEEEEEECTTCTTHHHHHHHHHHHHHHC-----TTEEEEEEEG--------GGC------------------------
T ss_pred             CCeEEEEEECCCCcchHHHHHHHHHHHHHC-----CCeEEEEEEC--------CCC------------------------
Confidence            55668899999998874  35566 66553     2466666643        211                        


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRI  437 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv  437 (691)
                         ..+.+.|++++.|++++   +|++
T Consensus       179 ---~~l~~~~~v~~~Pt~~~---~G~~  199 (229)
T 2ywm_A          179 ---QDLAEQFQVVGVPKIVI---NKGV  199 (229)
T ss_dssp             ---HHHHHHTTCCSSSEEEE---GGGT
T ss_pred             ---HHHHHHcCCcccCEEEE---CCEE
Confidence               12556799999999999   7774

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=90.15  E-value=0.71  Score=36.19  Aligned_cols=58  Identities=9%  Similarity=-0.058  Sum_probs=38.4

Q ss_pred             EEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHHHH
Q 044391          338 LLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVK  414 (691)
Q Consensus       338 lL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~~r  414 (691)
                      -+.|.+.||++|..  +.|. +.+++.    .+++++-|          |                     +   .    
T Consensus         3 ~v~f~a~wC~~C~~~~~~l~~~~~~~~----~~~~~~~v----------~---------------------~---~----   40 (77)
T 1ilo_A            3 KIQIYGTGCANCQMLEKNAREAVKELG----IDAEFEKI----------K---------------------E---M----   40 (77)
T ss_dssp             EEEEECSSSSTTHHHHHHHHHHHHHTT----CCEEEEEE----------C---------------------S---H----
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHcC----CceEEEEe----------c---------------------C---H----
Confidence            35666779988753  5566 666643    34666554          2                     1   1    


Q ss_pred             HHHHhhCcCCceEEEEeCCCCceecc
Q 044391          415 YAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       415 ~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      .+.+.|++++.|++++   +|+++..
T Consensus        41 ~~~~~~~v~~~Pt~~~---~G~~~~~   63 (77)
T 1ilo_A           41 DQILEAGLTALPGLAV---DGELKIM   63 (77)
T ss_dssp             HHHHHHTCSSSSCEEE---TTEEEEC
T ss_pred             HHHHHCCCCcCCEEEE---CCEEEEc
Confidence            2345689999999999   8988754

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=89.84  E-value=0.36  Score=53.54  Aligned_cols=68  Identities=6%  Similarity=-0.136  Sum_probs=46.6

Q ss_pred             CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCC----CCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCC
Q 044391          334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREE----FDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPT  406 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~----~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d  406 (691)
                      +|.|+++|.+.||++|.  .+.+. ++++++.+.+    +++.++=|-+        |+.                    
T Consensus        42 ~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~--------d~~--------------------   93 (470)
T 3qcp_A           42 LCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNC--------ASE--------------------   93 (470)
T ss_dssp             GSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEET--------TTC--------------------
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEEC--------CCC--------------------
Confidence            47899999999998874  36788 8877763312    1344444422        211                    


Q ss_pred             CCchHHHHHHHHhhCcCCceEEEEeCCCCc
Q 044391          407 IIEPAVVKYAKEVWKFSKKAILVPVDPQGR  436 (691)
Q Consensus       407 ~i~~~~~r~ike~f~~~~iP~LVvL~pqGk  436 (691)
                             +.+.+.|++++.|+++++++.|.
T Consensus        94 -------~~la~~y~V~~~PTlilf~~gg~  116 (470)
T 3qcp_A           94 -------VDLCRKYDINFVPRLFFFYPRDS  116 (470)
T ss_dssp             -------HHHHHHTTCCSSCEEEEEEESSC
T ss_pred             -------HHHHHHcCCCccCeEEEEECCCc
Confidence                   13566799999999999987764

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3

Probab=89.82  E-value=0.063  Score=46.77  Aligned_cols=18  Identities=11%  Similarity=0.014  Sum_probs=16.5

Q ss_pred             CcccccCChhhHHHHHhh
Q 044391          450 GNLAFPFSAEKEAALWKA  467 (691)
Q Consensus       450 G~~AFPFT~~r~e~L~~~  467 (691)
                      |++|||||.+|+++|.++
T Consensus         1 ~~~a~pfte~~~~~~~~~   18 (89)
T 1v5n_A            1 GSSGSSGTEERLKEIEAK   18 (89)
T ss_dssp             CCCCCCCCSSCCSHHHHH
T ss_pred             CCcccccCHHHHHHHHHH
Confidence            899999999999999765

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=89.63  E-value=0.47  Score=41.96  Aligned_cols=57  Identities=12%  Similarity=0.267  Sum_probs=43.3

Q ss_pred             chhhhhhhcCCcEEEEEccCChhHH---HHHHHHHHHHHHHhC--CceeeEEecccChHHHHhhhh
Q 044391          480 DATILEWMKEERYICLYGGGDIEWI---RRFTTSAKAVARAAQ--INLGMAYVGKNNAKERFRKIS  540 (691)
Q Consensus       480 d~~I~~~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~--~~~E~v~Vgkdn~~e~v~~~~  540 (691)
                      ...+.+.  .||.+.|||.+  .||   +.+.+.+.+++++.+  ..+++++|+-|...+.+++.+
T Consensus        20 ~~~l~~~--~gk~vll~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~   81 (146)
T 1o8x_A           20 EVEVKSL--AGKLVFFYFSA--SWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYF   81 (146)
T ss_dssp             EEEGGGG--TTCEEEEEEEC--TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHH
T ss_pred             CCcHHHh--CCCEEEEEEEc--cCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHH
Confidence            3344444  79999999999  565   888899988877644  589999999987666666544

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=89.48  E-value=1.8  Score=46.31  Aligned_cols=65  Identities=8%  Similarity=-0.085  Sum_probs=44.8

Q ss_pred             CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      |+.|+++|.+.||++|.  .+.+. +.++++.+    +.++-|-+        |.+                        
T Consensus        21 ~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~----v~~~~vd~--------~~~------------------------   64 (481)
T 3f8u_A           21 AGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI----VPLAKVDC--------TAN------------------------   64 (481)
T ss_dssp             SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----CCEEEEET--------TTC------------------------
T ss_pred             CCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCc----eEEEEEEC--------CCC------------------------
Confidence            48999999999998874  36677 77777532    34443322        211                        


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                         +.+.+.|++++.|+++++ .+|+.+
T Consensus        65 ---~~l~~~~~v~~~Ptl~~~-~~g~~~   88 (481)
T 3f8u_A           65 ---TNTCNKYGVSGYPTLKIF-RDGEEA   88 (481)
T ss_dssp             ---HHHHHHTTCCEESEEEEE-ETTEEE
T ss_pred             ---HHHHHhcCCCCCCEEEEE-eCCcee
Confidence               235677999999999999 567543

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=89.28  E-value=0.57  Score=41.00  Aligned_cols=59  Identities=12%  Similarity=0.144  Sum_probs=42.8

Q ss_pred             chhhhhhhcCCcEEEEEccCCh-hHHHHHHHHHHHHHHHhC--CceeeEEecccChHHHHhhhh
Q 044391          480 DATILEWMKEERYICLYGGGDI-EWIRRFTTSAKAVARAAQ--INLGMAYVGKNNAKERFRKIS  540 (691)
Q Consensus       480 d~~I~~~i~egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~--~~~E~v~Vgkdn~~e~v~~~~  540 (691)
                      ...+.+.  .||.+.|||.+.+ ..|+.+.+.+.++++..+  ..++++.|+-|...+.+++.+
T Consensus        20 ~~~l~~~--~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~   81 (144)
T 1o73_A           20 EVSLGSL--VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYY   81 (144)
T ss_dssp             CBCSGGG--TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHH
T ss_pred             cCcHHHh--CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHH
Confidence            3344455  7999999999832 334888888888877643  589999999987666665544

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=89.04  E-value=0.66  Score=39.56  Aligned_cols=24  Identities=4%  Similarity=-0.111  Sum_probs=18.4

Q ss_pred             HHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          413 VKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       413 ~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                      ...+.+.+++++.|++ ++  +|+.+.
T Consensus        62 ~~~l~~~~~v~~~Pt~-~~--~g~~v~   85 (116)
T 2e7p_A           62 QSALAHWTGRGTVPNV-FI--GGKQIG   85 (116)
T ss_dssp             HHHHHHHHSCCSSCEE-EE--TTEEEE
T ss_pred             HHHHHHHhCCCCcCEE-EE--CCEEEC
Confidence            4567778999999999 44  687764

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=88.69  E-value=2.3  Score=44.56  Aligned_cols=71  Identities=8%  Similarity=0.042  Sum_probs=45.1

Q ss_pred             cCcEEEEEEecCCCChhhh-HHH---H-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCC
Q 044391          333 RRKHVLLLISSLDLSDEEI-LVL---H-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTI  407 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~-~~L---~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~  407 (691)
                      .++.|++.|.|.||++|.+ +.|   . +|+++.+..+. ..|.+.-+ |-     ++.                     
T Consensus        29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~-~~v~~~~V-d~-----~~~---------------------   80 (367)
T 3us3_A           29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLED-KGVGFGLV-DS-----EKD---------------------   80 (367)
T ss_dssp             HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTT-TTEEEEEE-ET-----TTT---------------------
T ss_pred             hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhc-CCceEEEE-eC-----ccc---------------------
Confidence            4789999999999988754 322   2 56665432121 13555543 31     111                     


Q ss_pred             CchHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          408 IEPAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       408 i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                            +-|.++|++++.|+++++. +|+.+
T Consensus        81 ------~~l~~~~~V~~~PTl~~f~-~G~~~  104 (367)
T 3us3_A           81 ------AAVAKKLGLTEEDSIYVFK-EDEVI  104 (367)
T ss_dssp             ------HHHHHHHTCCSTTEEEEEE-TTEEE
T ss_pred             ------HHHHHHcCCCcCceEEEEE-CCcEE
Confidence                  1366779999999999997 57654

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=88.32  E-value=0.56  Score=49.23  Aligned_cols=73  Identities=11%  Similarity=0.036  Sum_probs=48.4

Q ss_pred             cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .+|.|+++|.+.||++|.  .+.+. +.++++......-.|+++-+ |       .+                   .  +
T Consensus        21 ~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~V-d-------~~-------------------~--~   71 (382)
T 2r2j_A           21 NADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARV-D-------CD-------------------Q--H   71 (382)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEE-E-------TT-------------------T--C
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEE-E-------CC-------------------c--c
Confidence            479999999999998874  36788 88888643111112555543 2       11                   0  1


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          +.|.+.|++++.|+++++ .+|+.+.
T Consensus        72 ----~~l~~~~~v~~~Pt~~~f-~~G~~~~   96 (382)
T 2r2j_A           72 ----SDIAQRYRISKYPTLKLF-RNGMMMK   96 (382)
T ss_dssp             ----HHHHHHTTCCEESEEEEE-ETTEEEE
T ss_pred             ----HHHHHhcCCCcCCEEEEE-eCCcEee
Confidence                235667999999999987 5787653

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=87.89  E-value=0.33  Score=49.92  Aligned_cols=39  Identities=13%  Similarity=0.041  Sum_probs=28.1

Q ss_pred             cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEE
Q 044391          333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWL  373 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwI  373 (691)
                      .+|.|+++|.+.||++|.  .+.|. ++++++.+  .++.++.|
T Consensus       266 ~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~--~~v~~~~v  307 (361)
T 3uem_A          266 EKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDH--ENIVIAKM  307 (361)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTC--SSEEEEEE
T ss_pred             CCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccC--CcEEEEEE
Confidence            589999999999998874  36677 87777643  23444444

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=87.77  E-value=0.75  Score=40.45  Aligned_cols=50  Identities=18%  Similarity=0.347  Sum_probs=40.3

Q ss_pred             CCcEEEEEccCChhHH---HHHHHHHHHHHHHhC--CceeeEEecccChHHHHhhhh
Q 044391          489 EERYICLYGGGDIEWI---RRFTTSAKAVARAAQ--INLGMAYVGKNNAKERFRKIS  540 (691)
Q Consensus       489 egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~--~~~E~v~Vgkdn~~e~v~~~~  540 (691)
                      .||.+.|||.+  .||   +.+.+.+.++++..+  ..++++.|+-|...+.+++.+
T Consensus        27 ~gk~vll~F~a--~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~   81 (144)
T 1i5g_A           27 AGKTVFFYFSA--SWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYY   81 (144)
T ss_dssp             TTSEEEEEEEC--TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHH
T ss_pred             CCCEEEEEEEC--CCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHH
Confidence            79999999999  565   888889988877644  589999999987666666544

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=87.60  E-value=0.68  Score=42.60  Aligned_cols=58  Identities=10%  Similarity=0.111  Sum_probs=43.6

Q ss_pred             hhhhhhcCCcEEEEEccCCh-hHHHHHHHHHHHHHHHhC--CceeeEEecccChHHHHhhhhh
Q 044391          482 TILEWMKEERYICLYGGGDI-EWIRRFTTSAKAVARAAQ--INLGMAYVGKNNAKERFRKISR  541 (691)
Q Consensus       482 ~I~~~i~egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~--~~~E~v~Vgkdn~~e~v~~~~~  541 (691)
                      .+.+.  .||.+.|||.+.+ ..|+++.+.+.++++...  ..++++.|+-|...+.+++.++
T Consensus        42 ~l~~~--~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~  102 (165)
T 3s9f_A           42 DMDSL--SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYA  102 (165)
T ss_dssp             CSGGG--TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHT
T ss_pred             cHHHc--CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHH
Confidence            33444  7999999999833 334899999999877643  4899999999877777766553

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=86.67  E-value=0.048  Score=47.68  Aligned_cols=26  Identities=8%  Similarity=-0.130  Sum_probs=20.7

Q ss_pred             eeecceecCcEEEEEEecCCCChhhh
Q 044391          326 RVNIEVLRRKHVLLLISSLDLSDEEI  351 (691)
Q Consensus       326 kV~Is~L~gK~VlL~fSal~~~~~e~  351 (691)
                      ++.++...||.+.+.|.+.||++|.-
T Consensus         4 ~~~la~~~~k~~vV~F~A~WC~~C~~   29 (106)
T 3kp8_A            4 AVGLAAHLRQIGGTMYGAYWCPHCQD   29 (106)
T ss_dssp             HHHHHHHHHHHTCEEEECTTCHHHHH
T ss_pred             hhHHHHhcCCCEEEEEECCCCHHHHH
Confidence            34566677889999999999998853

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=86.48  E-value=0.063  Score=48.82  Aligned_cols=71  Identities=10%  Similarity=-0.003  Sum_probs=45.9

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      +.+.++++|.+.||++|..  ..+. .|....+  ...+.++.|=+        +++.          |      ++   
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~--~~~~~l~~vdv--------~~~~----------~------~~---   67 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDE--GRAAPVQRLQM--------RDPL----------P------PG---   67 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHH--HHHSCEEEEET--------TSCC----------C------TT---
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhh--cccceEEEEEC--------CCCC----------c------hh---
Confidence            4578999999999999864  2344 6665321  23477888765        1110          0      11   


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                            +...+++.++|+||+++ +|+.+.
T Consensus        68 ------la~~~~V~g~PT~i~f~-~G~ev~   90 (116)
T 3dml_A           68 ------LELARPVTFTPTFVLMA-GDVESG   90 (116)
T ss_dssp             ------CBCSSCCCSSSEEEEEE-TTEEEE
T ss_pred             ------HHHHCCCCCCCEEEEEE-CCEEEe
Confidence                  11236789999999999 999876

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=85.55  E-value=1.7  Score=47.05  Aligned_cols=65  Identities=5%  Similarity=-0.204  Sum_probs=45.2

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .+|.|+++|.+.||++|.-  +.+. +.++++.   .++.++-|-.        |.+                       
T Consensus        30 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~---~~v~~~~vd~--------~~~-----------------------   75 (504)
T 2b5e_A           30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE---KNITLAQIDC--------TEN-----------------------   75 (504)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TTCEEEEEET--------TTC-----------------------
T ss_pred             cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcc---CCeEEEEEEC--------CCC-----------------------
Confidence            4799999999999988743  5676 7666652   2455555432        111                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCc
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGR  436 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGk  436 (691)
                          +.+.+.|++++.|+++++.. |+
T Consensus        76 ----~~l~~~~~v~~~Pt~~~~~~-g~   97 (504)
T 2b5e_A           76 ----QDLCMEHNIPGFPSLKIFKN-SD   97 (504)
T ss_dssp             ----HHHHHHTTCCSSSEEEEEET-TC
T ss_pred             ----HHHHHhcCCCcCCEEEEEeC-Cc
Confidence                23667799999999999964 55

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=84.45  E-value=2.2  Score=35.02  Aligned_cols=51  Identities=8%  Similarity=0.015  Sum_probs=39.3

Q ss_pred             hhhhhcCCcEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeeEEecccChH
Q 044391          483 ILEWMKEERYICLYGGGDI-EWIRRFTTSAKAVARAAQINLGMAYVGKNNAK  533 (691)
Q Consensus       483 I~~~i~egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkdn~~  533 (691)
                      +...++.||.+++||.+++ .+|+.+.+.+.++++..+..+.++.|.-+...
T Consensus        14 ~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   65 (109)
T 3tco_A           14 FDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQ   65 (109)
T ss_dssp             HHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCH
T ss_pred             HHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCH
Confidence            3444668999999999955 66699999999998876667888888776443

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=84.41  E-value=0.44  Score=46.52  Aligned_cols=44  Identities=5%  Similarity=-0.130  Sum_probs=33.5

Q ss_pred             hcCCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceeccc
Q 044391          394 QAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQN  441 (691)
Q Consensus       394 ~~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~N  441 (691)
                      +..+||.+|++-+.    ..+.+.++|++++.|+||+++++|++...|
T Consensus       179 ~~~~~~i~v~~~~~----~~~~l~~~f~v~~~Pslvl~~~~g~~~~~~  222 (244)
T 3q6o_A          179 LSQHKGVAVRRVLN----TEANVVRKFGVTDFPSCYLLFRNGSVSRVP  222 (244)
T ss_dssp             TTTCTTEEEEEEET----TCHHHHHHHTCCCSSEEEEEETTSCEEECC
T ss_pred             hccCCceEEEEEeC----chHHHHHHcCCCCCCeEEEEeCCCCeEeec
Confidence            44567777776441    124566679999999999999999999887

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=84.26  E-value=1.2  Score=39.27  Aligned_cols=50  Identities=12%  Similarity=0.067  Sum_probs=39.0

Q ss_pred             CCcEEEEEccCChhHH---HHHHHHHHHHHHHh-CCceeeEEecccChHHHHhhhh
Q 044391          489 EERYICLYGGGDIEWI---RRFTTSAKAVARAA-QINLGMAYVGKNNAKERFRKIS  540 (691)
Q Consensus       489 egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a-~~~~E~v~Vgkdn~~e~v~~~~  540 (691)
                      .||.+.|+|.+  .||   +...+.+.++.++. +..++++.|+-|...+.+++.+
T Consensus        31 ~gk~vll~F~a--~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~   84 (143)
T 4fo5_A           31 LGRYTLLNFWA--AYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETV   84 (143)
T ss_dssp             SCCEEEEEEEC--TTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHH
T ss_pred             CCCEEEEEEEc--CcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHH
Confidence            78999999998  566   77777888886653 3579999999997666666544

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=83.72  E-value=2.3  Score=43.82  Aligned_cols=71  Identities=13%  Similarity=0.047  Sum_probs=43.8

Q ss_pred             cCcEEEEEEecCCCChhh-hHH---HH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCC
Q 044391          333 RRKHVLLLISSLDLSDEE-ILV---LH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTI  407 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e-~~~---L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~  407 (691)
                      .+|.|++.|.|.||+... .+.   +. +|+++.+..++. .|.++-+ |-     |++                     
T Consensus        27 ~~~~~lV~F~a~wC~c~~~~p~~~~~~~~~~~~a~~~~~~-~v~~~~V-d~-----~~~---------------------   78 (350)
T 1sji_A           27 KYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHK-DIGFVMV-DA-----KKE---------------------   78 (350)
T ss_dssp             TCSEEEEEEECCSCSSSTTSHHHHHHHHHHHHHHHHGGGS-SEEEEEE-ET-----TTT---------------------
T ss_pred             hCCeEEEEEECCCCcchhhCchhhhhhHHHHHHHHHHhhc-CcEEEEE-eC-----CCC---------------------
Confidence            378999999999997322 244   34 455543322221 3555543 21     211                     


Q ss_pred             CchHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          408 IEPAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       408 i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                            +.+.+.|++++.|+++++ .+|++.
T Consensus        79 ------~~l~~~~~v~~~Pt~~~~-~~g~~~  102 (350)
T 1sji_A           79 ------AKLAKKLGFDEEGSLYVL-KGDRTI  102 (350)
T ss_dssp             ------HHHHHHHTCCSTTEEEEE-ETTEEE
T ss_pred             ------HHHHHhcCCCccceEEEE-ECCcEE
Confidence                  135677999999999999 678743

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=83.30  E-value=9.6  Score=37.57  Aligned_cols=98  Identities=5%  Similarity=-0.135  Sum_probs=52.2

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCC---------hhhHHHHH-HHhcCCCe
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWD---------EGYRQKFE-QLQAMMPW  399 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~---------D~d~~~F~-~~~~~MPW  399 (691)
                      .+|.++..|++.+||.|.-  +.|. ..++      .+..|+|+++- ...+.+         ..++.+|- .+...+.=
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~------g~v~v~~~~~p-~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~  168 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQQARPWVDS------GKVQLRTLLVG-VIKPESPATAAAILASKDPAKTWQQYEASGGK  168 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT------TSEEEEEEECC-CSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHhC------CcEEEEEEECC-cCCCcHHHHHHHHHHccCHHHHHHHHHHHhcc
Confidence            3789999999999998853  3344 3332      35777887751 000111         11233332 22221100


Q ss_pred             eeecCCCCCchHH------HHHHHHhhCcCCceEEEEeCCCCce
Q 044391          400 YTVQHPTIIEPAV------VKYAKEVWKFSKKAILVPVDPQGRI  437 (691)
Q Consensus       400 yAVp~~d~i~~~~------~r~ike~f~~~~iP~LVvL~pqGkv  437 (691)
                      -.+.-....+.+.      ...+.+.+++++.|++++.+.+|++
T Consensus       169 ~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~  212 (241)
T 1v58_A          169 LKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL  212 (241)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE
T ss_pred             CCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence            0000000011122      2345578999999999999989974

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=82.39  E-value=1.7  Score=38.81  Aligned_cols=87  Identities=6%  Similarity=-0.054  Sum_probs=52.0

Q ss_pred             CcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHH
Q 044391          334 RKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAV  412 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~  412 (691)
                      ++.|+++|.+.||++|..  +. ++++|.++ -.+.  .|+-+        |.++.                +       
T Consensus        23 ~~~vvv~F~a~wc~~C~~--~~p~l~~la~~-~~~v--~f~kv--------d~d~~----------------~-------   66 (118)
T 3evi_A           23 DVWVIIHLYRSSIPMCLL--VNQHLSLLARK-FPET--KFVKA--------IVNSC----------------I-------   66 (118)
T ss_dssp             TCEEEEEEECTTSHHHHH--HHHHHHHHHHH-CTTS--EEEEE--------EGGGT----------------S-------
T ss_pred             CCeEEEEEeCCCChHHHH--HHHHHHHHHHH-CCCC--EEEEE--------EhHHh----------------H-------
Confidence            458999999999999864  33 44554433 2234  44443        22220                0       


Q ss_pred             HHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCcccccCChhhHHHHHh
Q 044391          413 VKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWK  466 (691)
Q Consensus       413 ~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~e~L~~  466 (691)
                           +.|+++++|+++++- +|+.+..-. +. ...|-+  -||.+.+|..-+
T Consensus        67 -----~~~~v~~~PT~~~fk-~G~~v~~~~-G~-~~~gg~--~~~~~~le~~L~  110 (118)
T 3evi_A           67 -----QHYHDNCLPTIFVYK-NGQIEAKFI-GI-IECGGI--NLKLEELEWKLA  110 (118)
T ss_dssp             -----TTCCGGGCSEEEEEE-TTEEEEEEE-ST-TTTTCS--SCCHHHHHHHHH
T ss_pred             -----HHCCCCCCCEEEEEE-CCEEEEEEe-Ch-hhhCCC--CCCHHHHHHHHH
Confidence                 347899999999995 787775421 11 122222  588877776543

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=82.38  E-value=2.5  Score=36.59  Aligned_cols=50  Identities=16%  Similarity=0.241  Sum_probs=40.4

Q ss_pred             CCcEEEEEccCChhHH---HHHHHHHHHHHHHh--CCceeeEEecccChHHHHhhhh
Q 044391          489 EERYICLYGGGDIEWI---RRFTTSAKAVARAA--QINLGMAYVGKNNAKERFRKIS  540 (691)
Q Consensus       489 egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a--~~~~E~v~Vgkdn~~e~v~~~~  540 (691)
                      .||.+.|||.+  .||   +...+.+.++++..  +..++++.|+-|...+.+++..
T Consensus        32 ~gk~vll~F~~--~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~   86 (148)
T 3fkf_A           32 RNRYLLLNFWA--SWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAI   86 (148)
T ss_dssp             TTSEEEEEEEC--GGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHH
T ss_pred             CCcEEEEEEEC--CCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHH
Confidence            79999999998  777   89999999997764  3459999999887766666544

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=81.13  E-value=2.3  Score=37.72  Aligned_cols=55  Identities=13%  Similarity=0.074  Sum_probs=40.9

Q ss_pred             hhhhhhcCCcEEEEEccCChhHH---HHHHHHHHHHHHHh-CCceeeEEecccChHHHHhhhh
Q 044391          482 TILEWMKEERYICLYGGGDIEWI---RRFTTSAKAVARAA-QINLGMAYVGKNNAKERFRKIS  540 (691)
Q Consensus       482 ~I~~~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a-~~~~E~v~Vgkdn~~e~v~~~~  540 (691)
                      .+.+.  .||.+.|+|.+  .||   +...+.+.++++.. +..++++.|+-|...+.+++.+
T Consensus        23 ~l~~~--~gk~vll~F~a--~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~   81 (152)
T 2lrn_A           23 SLNDF--KGKYVLVDFWF--AGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAI   81 (152)
T ss_dssp             ESGGG--TTSEEEEEEEC--TTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHH
T ss_pred             eHHHc--CCCEEEEEEEC--CCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHH
Confidence            34444  79999999988  565   88888888887664 3469999999886666665543

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=80.68  E-value=1.2  Score=42.80  Aligned_cols=65  Identities=11%  Similarity=0.036  Sum_probs=42.3

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|++-|+|.||+||..  ++|. +=++..    +...|+=|=+        |+.                  |+    
T Consensus        41 ~k~VVVdF~A~WCgPCk~m~PvleelA~e~~----~~v~f~kVDV--------De~------------------~e----   86 (160)
T 2av4_A           41 ERLVCIRFGHDYDPDCMKMDELLYKVADDIK----NFCVIYLVDI--------TEV------------------PD----   86 (160)
T ss_dssp             SSEEEEEEECTTSHHHHHHHHHHHHHHHHHT----TTEEEEEEET--------TTC------------------CT----
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHHcc----CCcEEEEEEC--------CCC------------------HH----
Confidence            678999999999999864  5565 544442    2344444422        211                  11    


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                           +.+.|+++.+|+++++- +|+.+
T Consensus        87 -----~a~~y~V~siPT~~fFk-~G~~v  108 (160)
T 2av4_A           87 -----FNTMYELYDPVSVMFFY-RNKHM  108 (160)
T ss_dssp             -----TTTTTTCCSSEEEEEEE-TTEEE
T ss_pred             -----HHHHcCCCCCCEEEEEE-CCEEE
Confidence                 24558999999999884 66665

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=80.17  E-value=9  Score=36.92  Aligned_cols=94  Identities=11%  Similarity=0.089  Sum_probs=50.1

Q ss_pred             CcEEEEEEecCCCChhhh--HHHHHHHHhhccCCCCeeEEEE--eccc-CCC-------CCC-hhhHHHHHHHhcCCCee
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLHLYREHKAREEFDYAIVWL--PIVD-RSI-------AWD-EGYRQKFEQLQAMMPWY  400 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~iY~~lk~~~~~~fEIVwI--piVd-~s~-------~W~-D~d~~~F~~~~~~MPWy  400 (691)
                      +|.+...|++.|||.|.-  +.|.   ++.+.   +.+|+|+  |+.. ++.       -|- ....+.|.+.+..-+  
T Consensus        86 ~k~~vv~F~d~~Cp~C~~~~~~l~---~~~~~---~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~--  157 (211)
T 1t3b_A           86 EKHVVTVFMDITCHYCHLLHQQLK---EYNDL---GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNL--  157 (211)
T ss_dssp             CSEEEEEEECTTCHHHHHHHTTHH---HHHHT---TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCC--
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHH---HHHhC---CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCC--
Confidence            789999999999999853  3344   23322   3666665  5411 000       000 011233444443321  


Q ss_pred             eecCCC-CCchHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          401 TVQHPT-IIEPAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       401 AVp~~d-~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                       ++... .........+.+.+++++.|++++  .+|+.+
T Consensus       158 -~~~~~~~~~v~~~~~l~~~~gV~gTPt~vi--~nG~~~  193 (211)
T 1t3b_A          158 -PKEVKTPNIVKKHYELGIQFGVRGTPSIVT--STGELI  193 (211)
T ss_dssp             -CSSCCCSSHHHHHHHHHHHHTCCSSCEEEC--TTSCCC
T ss_pred             -CChHHHHHHHHHHHHHHHHcCCCcCCEEEE--eCCEEe
Confidence             22111 011223345668899999999998  568643

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=80.17  E-value=3.4  Score=33.76  Aligned_cols=46  Identities=9%  Similarity=-0.013  Sum_probs=36.0

Q ss_pred             hhcCCcEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeeEEecccC
Q 044391          486 WMKEERYICLYGGGDI-EWIRRFTTSAKAVARAAQINLGMAYVGKNN  531 (691)
Q Consensus       486 ~i~egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkdn  531 (691)
                      .++.||.+.+||.+++ .+|+.+.+.+.++++..+..+.++.|.-++
T Consensus        14 ~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~   60 (109)
T 2yzu_A           14 TLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDE   60 (109)
T ss_dssp             HHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTT
T ss_pred             HhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCC
Confidence            3568899999999844 556999999999988766568888887664

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=80.09  E-value=4  Score=33.31  Aligned_cols=45  Identities=4%  Similarity=-0.129  Sum_probs=36.4

Q ss_pred             CCcEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeeEEecccChH
Q 044391          489 EERYICLYGGGDI-EWIRRFTTSAKAVARAAQINLGMAYVGKNNAK  533 (691)
Q Consensus       489 egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkdn~~  533 (691)
                      .+|.+.+||.+++ .+|+.+.+.+.++++..+..+.++.|.-++..
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   63 (106)
T 3die_A           18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENP   63 (106)
T ss_dssp             CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH
T ss_pred             cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCH
Confidence            8899999999855 56699999999998886666888888777543

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=80.08  E-value=2.4  Score=37.23  Aligned_cols=52  Identities=8%  Similarity=-0.127  Sum_probs=38.4

Q ss_pred             CCcEEEEEccCCh-hHHHHHHHHHHHHHHHh-CCceeeEEecccChHHHHhhhh
Q 044391          489 EERYICLYGGGDI-EWIRRFTTSAKAVARAA-QINLGMAYVGKNNAKERFRKIS  540 (691)
Q Consensus       489 egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a-~~~~E~v~Vgkdn~~e~v~~~~  540 (691)
                      .||.+.|||.+.+ ..|+.+.+.+.++++.. +..++++.|+.+...+.+++..
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~   80 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFL   80 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHH
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHH
Confidence            7999999998733 44588888888887764 3359999999886665555543

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=80.05  E-value=1.9  Score=37.44  Aligned_cols=51  Identities=12%  Similarity=0.037  Sum_probs=39.3

Q ss_pred             CCcEEEEEccCChhHH---HHHHHHHHHHHHHh-CCceeeEEecccChHHHHhhhhh
Q 044391          489 EERYICLYGGGDIEWI---RRFTTSAKAVARAA-QINLGMAYVGKNNAKERFRKISR  541 (691)
Q Consensus       489 egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a-~~~~E~v~Vgkdn~~e~v~~~~~  541 (691)
                      .||.+.|||.+  .||   +...+.+.++.+.. +..++++.|+-+...+.+++.++
T Consensus        30 ~gk~vll~f~~--~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~   84 (148)
T 3hcz_A           30 QAKYTILFFWD--SQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIR   84 (148)
T ss_dssp             CCSEEEEEEEC--GGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHH
T ss_pred             CCCEEEEEEEC--CCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHH
Confidence            89999999998  677   78888888886663 33599999999866666655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	691
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.76
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.64
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.55
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	98.9
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.87
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	98.75
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	98.65
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	98.62
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	98.6
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	98.54
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	98.5
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	98.46
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.31
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.12
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.09
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	97.88
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	97.88
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.86
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	97.85
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	97.73
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.69
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	97.59
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	97.45
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	97.44
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	97.28
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	97.28
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	97.22
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	97.08
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	96.83
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	96.69
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	96.68
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	96.63
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	96.6
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	96.41
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	96.4
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	96.22
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	96.17
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	96.17
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	96.13
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	96.1
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	96.01
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	95.99
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	95.97
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	95.84
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	95.7
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	95.69
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	95.67
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	95.61
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	95.56
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	95.12
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	94.92
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	94.78
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	94.6
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	94.49
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	94.48
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	94.33
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	94.27
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	94.0
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	93.99
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	93.98
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	93.66
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	93.01
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	92.79
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	91.56
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	90.25
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	89.99
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	89.75
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	86.6
d1wjka_	100	Thioredoxin-like structure containing protein C330	85.52
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	85.18
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	85.14
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	84.65
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	84.02
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	81.13
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	81.09

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.76  E-value=2.5e-18  Score=158.02  Aligned_cols=127  Identities=18%  Similarity=0.328  Sum_probs=110.0

Q ss_pred             CceecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH
Q 044391          316 QPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ  392 (691)
Q Consensus       316 ~~l~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~  392 (691)
                      ..+++|+ +.+|++++|+||.|+|+|.|.||++|  +++.|. +|++.+.+  .+||||.|+.        |++++.+.+
T Consensus        11 ~~~l~~~-~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~--~~~~vi~vs~--------D~~~~~~~~   79 (144)
T d1i5ga_          11 TNVLKGA-AADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK--KNFEVMLISW--------DESAEDFKD   79 (144)
T ss_dssp             SEEEETT-EEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--TTEEEEEEEC--------CSSHHHHHH
T ss_pred             hhhccCC-CCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhc--cCcEEEEEec--------cccHHHHHH
Confidence            3567776 55799999999999999999999876  567899 99998753  5799999996        677889999


Q ss_pred             HhcCCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCC-CceecccHHHHHHH-hCcccccC
Q 044391          393 LQAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQ-GRILNQNAFHMLWI-WGNLAFPF  456 (691)
Q Consensus       393 ~~~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pq-Gkv~~~NA~~mI~~-wG~~AFPF  456 (691)
                      +..+++|+.+++.+   ..+...|.+.|+++++|++++||++ |++++.++++++.. -+..+||+
T Consensus        80 ~~~~~~~~~~~~~d---~~~~~~l~~~y~v~~iPt~~lid~~~G~vi~~~g~~~v~~d~~~~~fpw  142 (144)
T d1i5ga_          80 YYAKMPWLALPFED---RKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPW  142 (144)
T ss_dssp             HHTTCSSEECCTTC---HHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTC
T ss_pred             HHHhCCCCceeeEC---hHHHHHHHHHCCCCCcCEEEEEeCCCCEEEeehhHHHHhhCcccccCCC
Confidence            99999999999976   4556678899999999999999996 99999999999876 45678997

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.64  E-value=6.2e-16  Score=140.82  Aligned_cols=120  Identities=18%  Similarity=0.293  Sum_probs=101.2

Q ss_pred             CceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCee
Q 044391          324 RTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWY  400 (691)
Q Consensus       324 ~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWy  400 (691)
                      +.+|++++|+||.|+|+|.+.||++|  +++.|+ +|++.+.  +.+|+||.|+.        |.+++.+.++...++|+
T Consensus        18 ~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~--~~~~~vi~is~--------d~~~~~~~~~~~~~~~~   87 (144)
T d1o73a_          18 SGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHV--AKNFEVVLISW--------DENESDFHDYYGKMPWL   87 (144)
T ss_dssp             TSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEEC--------CSSHHHHHHHHTTCSSE
T ss_pred             CCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhh--ccCeEEEEEec--------chhHHHHHHHHHhcccc
Confidence            34599999999999999999999876  568899 9999864  45799999986        56778888999999999


Q ss_pred             eecCCCCCchHHHHHHHHhhCcCCceEEEEeCCC-CceecccHHHHH-HHhCcccccC
Q 044391          401 TVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQ-GRILNQNAFHML-WIWGNLAFPF  456 (691)
Q Consensus       401 AVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pq-Gkv~~~NA~~mI-~~wG~~AFPF  456 (691)
                      .+||.+   ......+.+.|+++++|++++||+| |+++..+++..+ ......+|||
T Consensus        88 ~~~~~~---~~~~~~l~~~y~v~~~Pt~~lID~~~G~Ii~~~~~~~~~~d~~~~~fpw  142 (144)
T d1o73a_          88 ALPFDQ---RSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPW  142 (144)
T ss_dssp             ECCTTC---HHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTC
T ss_pred             ceeeec---cchHHHHHHHcCCCcCCEEEEEECCCCEEEeecchhhhhhCcccccCCC
Confidence            999965   3445568889999999999999998 999999986544 5556778998

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.55  E-value=9.7e-15  Score=131.46  Aligned_cols=124  Identities=19%  Similarity=0.263  Sum_probs=104.1

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCC
Q 044391          322 SSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMP  398 (691)
Q Consensus       322 ~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MP  398 (691)
                      .++.+|+++.|+||.|+|+|.+.||++|  +.+.|. +|++++.+  .++++|+|+.        |++.+.+..++..++
T Consensus        14 ~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~--~~~~~v~is~--------d~~~~~~~~~~~~~~   83 (144)
T d1o8xa_          14 RGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES--KNFEVVFCTW--------DEEEDGFAGYFAKMP   83 (144)
T ss_dssp             ETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--TTEEEEEEEC--------CCSHHHHHHHHTTCS
T ss_pred             CCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhcccc--cccccccccc--------cccHHHHHHHHhhcc
Confidence            3456899999999999999999999887  557798 99998753  5799999986        667788999999999


Q ss_pred             eeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCC-CceecccHHHHH-HHhCcccccCCh
Q 044391          399 WYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQ-GRILNQNAFHML-WIWGNLAFPFSA  458 (691)
Q Consensus       399 WyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pq-Gkv~~~NA~~mI-~~wG~~AFPFT~  458 (691)
                      |+.+|+..   ....+.+.+.|+++++|+.+++|++ |+|+..+++..+ .......||+..
T Consensus        84 ~~~~~~~~---~d~~~~l~~~y~v~~~Pt~~liD~~~G~Vi~~~~~~~~~~d~~~~~~~w~~  142 (144)
T d1o8xa_          84 WLAVPFAQ---SEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKD  142 (144)
T ss_dssp             SEECCGGG---HHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCCC
T ss_pred             ccceeeec---ccchhhHHHHcCCCcCCEEEEEeCCCCEEEEEechhhhhhCcccccCCCCC
Confidence            99999964   2345578899999999999999998 899999987765 456677788864

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=98.90  E-value=7.6e-10  Score=98.80  Aligned_cols=111  Identities=8%  Similarity=-0.036  Sum_probs=82.7

Q ss_pred             cCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcC
Q 044391          320 DGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAM  396 (691)
Q Consensus       320 ~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~  396 (691)
                      ...+++.|+++.++||.|+|+|.+.||++|  +++.|. .|++.+.   .+++++-|+......++   +...+..++..
T Consensus         9 ~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~---~~~~~i~v~~~~~~~~~---~~~~~~~~~~~   82 (143)
T d2fy6a1           9 KTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKF---SSANLITVASPGFLHEK---KDGDFQKWYAG   82 (143)
T ss_dssp             EETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGG---TTSEEEEEECTTSTTCC---CTTHHHHHHTT
T ss_pred             ECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhcc---CCcEEEEEeeeeccccc---chhhhhhhhhh
Confidence            345677899999999999999999999887  567899 9999873   46888888764333333   33456666667


Q ss_pred             CCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          397 MPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       397 MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      ..++..|...  |.  ...+.+.|+++++|+.+++|++|+++..
T Consensus        83 ~~~~~~~~~~--D~--~~~~~~~~~v~~~P~~~liD~~G~i~~~  122 (143)
T d2fy6a1          83 LNYPKLPVVT--DN--GGTIAQSLNISVYPSWALIGKDGDVQRI  122 (143)
T ss_dssp             SCCTTSCEEE--CT--TCHHHHHTTCCSSSEEEEECTTSCEEEE
T ss_pred             cCCccccccc--cc--chHHHHHcCCCccCEEEEECCCCEEEEE
Confidence            7766655521  11  2245667999999999999999998755

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.87  E-value=5.9e-09  Score=96.66  Aligned_cols=114  Identities=18%  Similarity=0.146  Sum_probs=85.1

Q ss_pred             ceecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH
Q 044391          317 PVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL  393 (691)
Q Consensus       317 ~l~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~  393 (691)
                      +-+...+|+.|++++|+||.|+|+|.+.||++|  +...|. .|++.+   +..+.||+|++ |..   +.+..++|-+-
T Consensus        39 f~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~---~~~~~vv~vs~-d~~---~~~~~~~~~~~  111 (176)
T d1jfua_          39 LAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLS---GPNFEVVAINI-DTR---DPEKPKTFLKE  111 (176)
T ss_dssp             CEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHC---BTTEEEEEEEC-CCS---CTTHHHHHHHH
T ss_pred             eEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhcccccc---ccccccccccc-ccc---chhhhhhhHhh
Confidence            456667888999999999999999999999876  456688 998876   56799999986 310   22334555443


Q ss_pred             hcCCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          394 QAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       394 ~~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                       ...+|+.+....  .....+.+...+++.++|+.++||++|+++..
T Consensus       112 -~~~~~~~~~~d~--~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~  155 (176)
T d1jfua_         112 -ANLTRLGYFNDQ--KAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT  155 (176)
T ss_dssp             -TTCCTTCCEECT--TCHHHHHHHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred             -hCCcceeeeecc--hhHHHHHHhhhccCCCCCeEEEEcCCCEEEEE
Confidence             345665554443  34566777788899999999999999999753

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.75  E-value=6.9e-09  Score=92.28  Aligned_cols=104  Identities=13%  Similarity=-0.001  Sum_probs=73.8

Q ss_pred             ceecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH
Q 044391          317 PVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL  393 (691)
Q Consensus       317 ~l~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~  393 (691)
                      +-+.-.+|+.+++++++||.|+|+|.+.|||+|  +++.|+ .|++     ..+..+|+|+.-+     +...-+.|-+-
T Consensus         7 f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~-----~~~v~~v~v~~~~-----~~~~~~~~~~~   76 (134)
T d1lu4a_           7 FTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAA-----NPAVTFVGIATRA-----DVGAMQSFVSK   76 (134)
T ss_dssp             CEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHH-----CTTSEEEEEECSS-----CHHHHHHHHHH
T ss_pred             ceeECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhh-----hcccccccccccc-----chhhhhhhhhh
Confidence            334456788999999999999999999999887  456788 8765     3468899998521     23334455443


Q ss_pred             hcCCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          394 QAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       394 ~~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                      + ..+|-.+.-++       ..+.+.|++.+.|.++++|++|++.
T Consensus        77 ~-~~~~p~~~d~~-------~~~~~~~~v~~~P~~~lid~~G~i~  113 (134)
T d1lu4a_          77 Y-NLNFTNLNDAD-------GVIWARYNVPWQPAFVFYRADGTST  113 (134)
T ss_dssp             H-TCCSEEEECTT-------SHHHHHTTCCSSSEEEEECTTSCEE
T ss_pred             h-ccccceeeCch-------HHHHHHcCCCcCCEEEEEeCCCeEE
Confidence            3 34443332222       1355669999999999999999875

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.65  E-value=2.9e-08  Score=88.91  Aligned_cols=104  Identities=14%  Similarity=0.092  Sum_probs=72.2

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA  395 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~  395 (691)
                      .++..+..+.++.++||.|+|+|.+.||++|.  ++.|. .|+.      .+++++.|...+     +..+.++|..-+ 
T Consensus        16 ~~~~~~~~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~------~~~~~~~i~~~~-----~~~~~~~~~~~~-   83 (144)
T d1knga_          16 ADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD------KRFQLVGINYKD-----AADNARRFLGRY-   83 (144)
T ss_dssp             ETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC------TTSEEEEEEESC-----CHHHHHHHHHHH-
T ss_pred             ccCCcCCccCHHHhCCCEEEEEeeccccccccccCchhhhhhhc------cCceeEEEEeee-----chHHHHHHHHHc-
Confidence            34555567999999999999999999998884  34555 4332      358888888643     244445554322 


Q ss_pred             CCCeeeecC-CCCCchHHHHHHHHhhCcCCceEEEEeCCCCceeccc
Q 044391          396 MMPWYTVQH-PTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQN  441 (691)
Q Consensus       396 ~MPWyAVp~-~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~N  441 (691)
                      .++++.+-+ ++   .    .+.+.|++.++|+.++||++|+++...
T Consensus        84 ~~~~~~~~~d~~---~----~~~~~~~v~~~P~~~liD~~G~i~~~~  123 (144)
T d1knga_          84 GNPFGRVGVDAN---G----RASIEWGVYGVPETFVVGREGTIVYKL  123 (144)
T ss_dssp             CCCCSEEEEETT---S----HHHHHTTCCSSCEEEEECTTSBEEEEE
T ss_pred             CCcccccccccc---c----hhhhhcCccccceEEEEcCCCeEEEEE
Confidence            444443332 22   1    356779999999999999999999754

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.62  E-value=1.1e-07  Score=83.57  Aligned_cols=101  Identities=17%  Similarity=0.082  Sum_probs=71.6

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCC
Q 044391          322 SSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMP  398 (691)
Q Consensus       322 ~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MP  398 (691)
                      .+|+.+.+++++||.|+|.|-+.|||+|  +++.|. +|++.+     +..+|.|+..|     +..+.+.|-..+ ..+
T Consensus        13 ~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~-----~~~~v~v~~~d-----~~~~~~~~~~~~-~~~   81 (134)
T d1zzoa1          13 LDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-----EVTFVGVAGLD-----QVPAMQEFVNKY-PVK   81 (134)
T ss_dssp             TTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEECSS-----CHHHHHHHHHHT-TCT
T ss_pred             CCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhc-----ccccccccccc-----cchhHHHHHHhc-CCc
Confidence            4567899999999999999999999887  567788 888643     35677776533     234444554433 334


Q ss_pred             eeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          399 WYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       399 WyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                      ++.+-+..  +.    .+.+.|++++.|..+++|++|++..
T Consensus        82 ~~~~l~D~--~~----~~~~~~~v~~~P~~~iiD~~G~i~~  116 (134)
T d1zzoa1          82 TFTQLADT--DG----SVWANFGVTQQPAYAFVDPHGNVDV  116 (134)
T ss_dssp             TSEEEECT--TC----HHHHHTTCCSSSEEEEECTTCCEEE
T ss_pred             ceeEEeec--cc----hHHHhcCCCccCeEEEECCCCeEEE
Confidence            44443322  11    3566699999999999999999754

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.60  E-value=6.1e-08  Score=85.87  Aligned_cols=104  Identities=13%  Similarity=0.171  Sum_probs=75.5

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCC
Q 044391          321 GSSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMM  397 (691)
Q Consensus       321 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~M  397 (691)
                      -.+|..+++++++||.++++|.+.||++|.  .+.|. +|++...   .++.+|.|+.-+     +..+-++|-+- ...
T Consensus        12 ~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~v~i~~~~-----~~~~~~~~~~~-~~~   82 (137)
T d1st9a_          12 DTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKS---QGVEIVAVNVGE-----SKIAVHNFMKS-YGV   82 (137)
T ss_dssp             CTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG---GTEEEEEEEESC-----CHHHHHHHHHH-TTC
T ss_pred             CCCcCEEeHHHhCCCEEEEEEeeccccceeecccccccccccccc---cccccccccccc-----hhhhHHHHHHH-cCC
Confidence            346778999999999999999999998774  56688 9999863   469999998622     22233444332 245


Q ss_pred             CeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          398 PWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       398 PWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      ||..+--++   .    .+.+.|++.+.|.++++|++|+++..
T Consensus        83 ~~~~~~d~~---~----~~~~~~~v~~~P~~~liD~~G~i~~~  118 (137)
T d1st9a_          83 NFPVVLDTD---R----QVLDAYDVSPLPTTFLINPEGKVVKV  118 (137)
T ss_dssp             CSCEEEETT---S----HHHHHTTCCSSCEEEEECTTSEEEEE
T ss_pred             Ccccccccc---c----hhhhhhhccccceEEEECCCCEEEEE
Confidence            555443332   1    35566999999999999999999864

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=98.54  E-value=1.8e-07  Score=83.57  Aligned_cols=103  Identities=7%  Similarity=-0.005  Sum_probs=71.8

Q ss_pred             CceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH--hcCCC
Q 044391          324 RTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL--QAMMP  398 (691)
Q Consensus       324 ~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~--~~~MP  398 (691)
                      |..+..+.+.||.|+|+|-+.||++|  +++.|. +|++.+    ++.++|.|.+-+.  .. +.+......+  ...+|
T Consensus        19 g~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~----~~~~~i~v~~~~~--~~-~~~~~~~~~~~~~~~~~   91 (143)
T d2b5xa1          19 GEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQ----DQLNVVAVHMPRS--ED-DLDPGKIKETAAEHDIT   91 (143)
T ss_dssp             CCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHT----TTSEEEEEECCCS--TT-TSSHHHHHHHHHHTTCC
T ss_pred             CeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhh----ccccceeEEeecc--cc-ccchhhhhhHHHhhccC
Confidence            55577888999999999999999876  567788 999875    3488999976322  11 2222233322  23566


Q ss_pred             eeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          399 WYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       399 WyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      |..+--++       ..+.+.|++.+.|+.+++|++|+++..
T Consensus        92 ~p~~~D~~-------~~~~~~~~v~~~P~~~~id~~G~i~~~  126 (143)
T d2b5xa1          92 QPIFVDSD-------HALTDAFENEYVPAYYVFDKTGQLRHF  126 (143)
T ss_dssp             SCEEECSS-------CHHHHHTCCCCSSEEEEECTTCBEEEE
T ss_pred             ccccccCc-------cchHHHcCCCcCCEEEEECCCCEEEEE
Confidence            65443222       235566999999999999999999865

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=1.5e-07  Score=83.33  Aligned_cols=102  Identities=17%  Similarity=0.053  Sum_probs=68.5

Q ss_pred             ecCCCCceeeccee-cCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh
Q 044391          319 VDGSSRTRVNIEVL-RRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ  394 (691)
Q Consensus       319 ~~g~~~~kV~Is~L-~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~  394 (691)
                      +|+. |+.+..+.| +||.|+|.|-|.||++|  +++.|+ +++       .++.+|.|..-+     +......|-.- 
T Consensus         5 ld~~-g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~-------~~~~vi~i~~~~-----~~~~~~~~~~~-   70 (136)
T d1z5ye1           5 LDNP-GQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSA-------QGIRVVGMNYKD-----DRQKAISWLKE-   70 (136)
T ss_dssp             SSST-TCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHH-------TTCCEEEEEESC-----CHHHHHHHHHH-
T ss_pred             ccCC-CcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhh-------hhhhhccccccc-----chhhhHHHHHH-
Confidence            4443 557888998 89999999999999887  567777 653       247888887622     22233333322 


Q ss_pred             cCCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          395 AMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       395 ~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      ...+|+.+.+..  +.    .+.+.|++.++|+.+++|++|+++..
T Consensus        71 ~~~~~~~~~~d~--~~----~~~~~~~v~~~P~~~liD~~G~i~~~  110 (136)
T d1z5ye1          71 LGNPYALSLFDG--DG----MLGLDLGVYGAPETFLIDGNGIIRYR  110 (136)
T ss_dssp             HCCCCSEEEEES--SC----HHHHHHTCCSBSEEEEECTTSCEEEE
T ss_pred             cCCccceeeccc--ch----hHHHhcccCCcceEEEEcCCCEEEEE
Confidence            233333333322  11    24566899999999999999999854

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=98.46  E-value=4e-07  Score=86.07  Aligned_cols=114  Identities=10%  Similarity=0.039  Sum_probs=78.8

Q ss_pred             ecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCC-CCCh-hhHHHHHHH
Q 044391          319 VDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSI-AWDE-GYRQKFEQL  393 (691)
Q Consensus       319 ~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~-~W~D-~d~~~F~~~  393 (691)
                      +-..+|+.+.+++++||.|+|.|-+.|||+|  +++.|. +|++.+.    +..+|.|..-|... ..+. +.-++|.+ 
T Consensus        17 l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~----~v~~v~i~snd~~~~~~~~~e~~~~~~~-   91 (187)
T d2cvba1          17 LPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRG----KVAFVGINANDYEKYPEDAPEKMAAFAE-   91 (187)
T ss_dssp             EECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT----TEEEEEEECCCTTTCGGGSHHHHHHHHH-
T ss_pred             eecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhccc----cceeeeeeccccccccccchHHHHHHHH-
Confidence            3356788999999999999999999999886  567899 9998752    47777776422111 1111 12233333 


Q ss_pred             hcCCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecccHHH
Q 044391          394 QAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFH  444 (691)
Q Consensus       394 ~~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~  444 (691)
                      ...++|..+.-++   .    .+.+.|++.+.|..+++|++|+++-.=+++
T Consensus        92 ~~~~~~p~l~D~~---~----~~~~~~~v~~~P~~~liD~~G~i~y~G~id  135 (187)
T d2cvba1          92 EHGIFFPYLLDET---Q----EVAKAYRALRTPEVFLFDERRLLRYHGRVN  135 (187)
T ss_dssp             HHTCCSCEEECSS---S----HHHHHTTCCEESEEEEECTTCBEEEEECSS
T ss_pred             HhCCcceeeechh---h----hhcccccccceeeEEEEcCCCeEEEEeeec
Confidence            3456766665443   2    345569999999999999999998654433

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.31  E-value=3.4e-06  Score=77.59  Aligned_cols=116  Identities=17%  Similarity=0.236  Sum_probs=79.1

Q ss_pred             CceecCCCCceeecceecCcEEEEEEecCCCCh-h--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChh--hHHH
Q 044391          316 QPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSD-E--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEG--YRQK  389 (691)
Q Consensus       316 ~~l~~g~~~~kV~Is~L~gK~VlL~fSal~~~~-~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~--d~~~  389 (691)
                      .+-+-..+|+.|++++|+||.|+|+|-..|||. |  .+..|. +|+++++. +.++++|+|++ |   ++.|.  ..++
T Consensus        13 ~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~-~~~v~~v~isi-D---p~~Dtp~~l~~   87 (172)
T d1xzoa1          13 PFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAE-NIDVRIISFSV-D---PENDKPKQLKK   87 (172)
T ss_dssp             CCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHT-TCCCEEEEEES-C---TTTCCHHHHHH
T ss_pred             CeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccc-ccccccccccc-c---cccchHHHHHH
Confidence            355667889999999999999999999999852 4  556788 99999765 77899999986 5   34442  2355


Q ss_pred             HHHHhcC--CCeeeecCCCCCchHHHHHHHHhhCc-CC----------ceEEEEeCCCCcee
Q 044391          390 FEQLQAM--MPWYTVQHPTIIEPAVVKYAKEVWKF-SK----------KAILVPVDPQGRIL  438 (691)
Q Consensus       390 F~~~~~~--MPWyAVp~~d~i~~~~~r~ike~f~~-~~----------iP~LVvL~pqGkv~  438 (691)
                      |.+.+.-  ..|-.|--++  .....++....|+. .+          -|.++++||+|+++
T Consensus        88 y~~~~~~~~~~w~~lt~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~  147 (172)
T d1xzoa1          88 FAANYPLSFDNWDFLTGYS--QSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVL  147 (172)
T ss_dssp             HHTTSCCCGGGEEEEBCSC--HHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEE
T ss_pred             HHHHhccccccceeeccch--HHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEE
Confidence            5543321  2465543332  22334444444433 22          36899999999986

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=8.4e-06  Score=71.80  Aligned_cols=111  Identities=11%  Similarity=0.111  Sum_probs=72.1

Q ss_pred             cCCCCceeecceecCcEEEEEEecCCCCh-h--hhHHHH-HHHHhhccC-CCCeeEEEEecccCCCCCChhhHHHHH--H
Q 044391          320 DGSSRTRVNIEVLRRKHVLLLISSLDLSD-E--EILVLH-LYREHKARE-EFDYAIVWLPIVDRSIAWDEGYRQKFE--Q  392 (691)
Q Consensus       320 ~g~~~~kV~Is~L~gK~VlL~fSal~~~~-~--e~~~L~-iY~~lk~~~-~~~fEIVwIpiVd~s~~W~D~d~~~F~--~  392 (691)
                      ...+|+.|++++|+||.|+|+|-..+||. |  ....|. +++++.... ...+.++.++.-+     .....+...  .
T Consensus         6 ~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~   80 (160)
T d1wp0a1           6 TTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDP-----ERDTKEAIANYV   80 (160)
T ss_dssp             EETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCT-----TTCCHHHHHHHH
T ss_pred             EcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCC-----CcccHHHHHHHH
Confidence            34577799999999999999999999964 4  446688 999987542 2344455555421     112222222  3


Q ss_pred             HhcCCCeeeecCCCCCchHHHHHHHHhhCcCC---------------ceEEEEeCCCCceec
Q 044391          393 LQAMMPWYTVQHPTIIEPAVVKYAKEVWKFSK---------------KAILVPVDPQGRILN  439 (691)
Q Consensus       393 ~~~~MPWyAVp~~d~i~~~~~r~ike~f~~~~---------------iP~LVvL~pqGkv~~  439 (691)
                      .....+|..++-.    ......+...|.+-.               .|.++++||+|+++.
T Consensus        81 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~  138 (160)
T d1wp0a1          81 KEFSPKLVGLTGT----REEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLD  138 (160)
T ss_dssp             HTTCTTCEEEECC----HHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEE
T ss_pred             hhcCCCcccccCc----hHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEE
Confidence            3456677766653    244445556666433               358899999999984

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.09  E-value=2.4e-06  Score=78.42  Aligned_cols=108  Identities=13%  Similarity=0.120  Sum_probs=72.4

Q ss_pred             CCCCceeecceecCcEEEEEE-ecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHH-HHhc
Q 044391          321 GSSRTRVNIEVLRRKHVLLLI-SSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFE-QLQA  395 (691)
Q Consensus       321 g~~~~kV~Is~L~gK~VlL~f-Sal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~-~~~~  395 (691)
                      +.+|++|++++++||.|.|+| .+.|||.|  ++.-|. .|+++++   ..++|+-||. |     +.....+|. ....
T Consensus        20 d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~---~~~~v~~is~-d-----~~~~~~~~~~~~~~   90 (167)
T d1e2ya_          20 NGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAE---INTEVISCSC-D-----SEYSHLQWTSVDRK   90 (167)
T ss_dssp             SSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHT---TTEEEEEEES-S-----CHHHHHHHHHSCGG
T ss_pred             CCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhc---CceEEEeecC-C-----cHHhHHHHHhhHHH
Confidence            346778999999999999998 59998665  667799 9999984   4699999985 3     234445554 3333


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCc----CC--ceEEEEeCCCCceec
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKF----SK--KAILVPVDPQGRILN  439 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~----~~--iP~LVvL~pqGkv~~  439 (691)
                      ..+=+.+||+-+.+..  +.+.+.|++    .+  .|+..|||++|++..
T Consensus        91 ~~~~~~~~~~~l~d~~--~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~  138 (167)
T d1e2ya_          91 KGGLGPMAIPMLADKT--KAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQ  138 (167)
T ss_dssp             GTCCCCCSSCEEECTT--CHHHHHHTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             hcccccccccccccch--hHHHHHcCCCcccCCCceeEEEEECCCCEEEE
Confidence            3333345555433222  233344666    23  468899999999954

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.88  E-value=3.1e-05  Score=70.88  Aligned_cols=103  Identities=17%  Similarity=0.129  Sum_probs=71.7

Q ss_pred             CCCCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcC
Q 044391          321 GSSRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAM  396 (691)
Q Consensus       321 g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~  396 (691)
                      +..++.+.+++++||.|.|+|- +.|||.|  +..-+. .|++++++   +.+||.|+. |     +....+.|..-+..
T Consensus        31 ~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~---g~~vv~is~-d-----~~~~~~~~~~~~~~  101 (169)
T d2bmxa1          31 GDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR---DAQILGVSI-D-----SEFAHFQWRAQHND  101 (169)
T ss_dssp             GGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT---TEEEEEEES-S-----CHHHHHHHHHHCTT
T ss_pred             cccccEeeHHHHCCCeEEEEEecCCCCcccccccccccccccccccc---Ccceeeccc-c-----chhhhhhhcccccc
Confidence            3445789999999999999885 8888666  556688 99999854   589999986 2     24455666554332


Q ss_pred             ---CCeeeecCCCCCchHHHHHHHHhhCc-----CCceEEEEeCCCCceec
Q 044391          397 ---MPWYTVQHPTIIEPAVVKYAKEVWKF-----SKKAILVPVDPQGRILN  439 (691)
Q Consensus       397 ---MPWyAVp~~d~i~~~~~r~ike~f~~-----~~iP~LVvL~pqGkv~~  439 (691)
                         .|..-+.-++   .+    +.+.|++     ...|+.+|+|++|++..
T Consensus       102 ~~~~~f~ll~D~~---~~----v~~~ygv~~~~~~~~r~~fvID~~G~I~~  145 (169)
T d2bmxa1         102 LKTLPFPMLSDIK---RE----LSQAAGVLNADGVADRVTFIVDPNNEIQF  145 (169)
T ss_dssp             GGGCCSCEEECTT---SH----HHHHHTCBCTTSSBCEEEEEECTTSBEEE
T ss_pred             cccceEEEEeccH---HH----HHHHcCCCccCCccceeEEEEcCCCEEEE
Confidence               3433333332   23    3344777     67899999999999965

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=97.88  E-value=2.8e-05  Score=71.85  Aligned_cols=104  Identities=13%  Similarity=0.139  Sum_probs=70.6

Q ss_pred             cCCCCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh-
Q 044391          320 DGSSRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ-  394 (691)
Q Consensus       320 ~g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~-  394 (691)
                      .|.++.+|++++++||.|.|+|= +.|||+|  ++.-++ .|++++++   +++||-||. |     +....+.|-+-+ 
T Consensus        17 ~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~---g~~vv~IS~-D-----~~~~~~~~~~~~~   87 (166)
T d1we0a1          17 SGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL---GVEVYSVST-D-----THFVHKAWHENSP   87 (166)
T ss_dssp             SSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT---TEEEEEEES-S-----CHHHHHHHHHSCH
T ss_pred             CCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhccc---ceEEEeccc-c-----cHHHHHHHhhhhh
Confidence            35667789999999998888776 4488665  567799 99999854   699999996 3     133335554322 


Q ss_pred             --cCCCeeeecCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceec
Q 044391          395 --AMMPWYTVQHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILN  439 (691)
Q Consensus       395 --~~MPWyAVp~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~  439 (691)
                        ..+|...+.-++   .++    .+.|++.      ..|...||||+|++..
T Consensus        88 ~~~~~~fpll~D~~---~~v----~~~ygv~~~~~~~~~r~tfvID~~G~I~~  133 (166)
T d1we0a1          88 AVGSIEYIMIGDPS---QTI----SRQFDVLNEETGLADRGTFIIDPDGVIQA  133 (166)
T ss_dssp             HHHTCCSEEEECTT---CHH----HHHTTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             hhcccccccccCcc---cHH----HHHhCCCccccCcccceEEEECCCCcEEE
Confidence              245544444443   233    3346653      3577999999999965

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.86  E-value=4.1e-05  Score=66.83  Aligned_cols=121  Identities=8%  Similarity=-0.020  Sum_probs=73.7

Q ss_pred             ceecCCCCceeecceecCcEEEEEEecCCCCh-hhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH
Q 044391          317 PVVDGSSRTRVNIEVLRRKHVLLLISSLDLSD-EEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ  392 (691)
Q Consensus       317 ~l~~g~~~~kV~Is~L~gK~VlL~fSal~~~~-~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~  392 (691)
                      +-+...+|+.|+.++++||.|+++|-..+||+ |..  ..+. .+..........+.+++++..+.   .++.+......
T Consensus         9 F~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~   85 (169)
T d2b7ka1           9 FHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPA---RDSPAVLKEYL   85 (169)
T ss_dssp             CEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTT---TCCHHHHHHHH
T ss_pred             eEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccc---cCchhhhhhhh
Confidence            44555788899999999999999999999865 333  3455 66666554466788888876431   12222223333


Q ss_pred             HhcCCCeeeecCCCCCchHHHHH------------HHHhhCcCCceEEEEeCCCCceecc
Q 044391          393 LQAMMPWYTVQHPTIIEPAVVKY------------AKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       393 ~~~~MPWyAVp~~d~i~~~~~r~------------ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      ....-+|..+...........+.            -..-+.+.+.|.++++||+|+++..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~  145 (169)
T d2b7ka1          86 SDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDA  145 (169)
T ss_dssp             TTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEE
T ss_pred             ccccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEE
Confidence            34445666555543111111111            1122346778999999999999965

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.85  E-value=2.2e-05  Score=70.41  Aligned_cols=123  Identities=11%  Similarity=0.160  Sum_probs=80.7

Q ss_pred             ecCCCCceeeccee--cCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH
Q 044391          319 VDGSSRTRVNIEVL--RRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ  392 (691)
Q Consensus       319 ~~g~~~~kV~Is~L--~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~  392 (691)
                      +.+.+|+.++++++  +||.|.|+|= +.|||+|  ++.-|. .|++++   +...++|-|+. |     +....++|.+
T Consensus        13 L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~---~~~~~vv~is~-d-----~~~~~~~~~~   83 (160)
T d2cx4a1          13 LPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLE---KANAEVLAISV-D-----SPWCLKKFKD   83 (160)
T ss_dssp             ECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTS---TTCCEEEEEES-S-----CHHHHHHHHH
T ss_pred             eECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhccccccc---ccccccccccc-c-----chhhhhhhcc
Confidence            34677888999998  7897877775 7889777  455677 888776   34588999885 3     2444556654


Q ss_pred             HhcCCCeeeecCCCCCchHHHHHHHHhhCc----------CCceEEEEeCCCCceecccHHHHHHHhCcccccCChhhHH
Q 044391          393 LQAMMPWYTVQHPTIIEPAVVKYAKEVWKF----------SKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEA  462 (691)
Q Consensus       393 ~~~~MPWyAVp~~d~i~~~~~r~ike~f~~----------~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~e  462 (691)
                      . ..+||.-+..++   .+.    .+.|++          ...|..+++||+|+++....         ...|+...+.+
T Consensus        84 ~-~~~~~~~l~D~~---~~~----~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~---------~~~~~~~~~~~  146 (160)
T d2cx4a1          84 E-NRLAFNLLSDYN---REV----IKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWV---------TDNPLNEPDYD  146 (160)
T ss_dssp             H-HTCSSEEEECTT---SHH----HHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEE---------CSSTTCCCCHH
T ss_pred             c-ceeeEEEeecCC---cch----HHHcCccccccccccccceeeEEEEcCCCEEEEEEE---------eCCCCCCCCHH
Confidence            4 467776666554   233    334665          24578999999999985432         12455555555


Q ss_pred             HHHhh
Q 044391          463 ALWKA  467 (691)
Q Consensus       463 ~L~~~  467 (691)
                      ++-++
T Consensus       147 eil~~  151 (160)
T d2cx4a1         147 EVVRE  151 (160)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55444

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.73  E-value=5.8e-05  Score=68.96  Aligned_cols=104  Identities=13%  Similarity=0.088  Sum_probs=74.2

Q ss_pred             cCCCCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh-
Q 044391          320 DGSSRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ-  394 (691)
Q Consensus       320 ~g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~-  394 (691)
                      .|..++.|++++++||.|.|||= +.|||.|  +..-+. .|++.++   .+.+|+-||. |     +...++.|-+-. 
T Consensus        12 ~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~---~~~~vigIS~-d-----~~~~~~~~~~~~~   82 (158)
T d1zyea1          12 VSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHD---VNCEVVAVSV-D-----SHFSHLAWINTPR   82 (158)
T ss_dssp             CSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHH---TTEEEEEEES-S-----CHHHHHHHHTSCG
T ss_pred             eCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhc---CCceEEeccC-c-----CHHHHHHHHhhhH
Confidence            35567789999999999999998 6777666  556688 9999874   4689999995 4     355667775532 


Q ss_pred             -----cCCCeeeecCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceec
Q 044391          395 -----AMMPWYTVQHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILN  439 (691)
Q Consensus       395 -----~~MPWyAVp~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~  439 (691)
                           ..+|+.-+--++   .    .+.+.|++.      .+|...||||+|++..
T Consensus        83 ~~~~~~~~~f~llsD~~---~----~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~  131 (158)
T d1zyea1          83 KNGGLGHMNIALLSDLT---K----QISRDYGVLLEGPGLALRGLFIIDPNGVIKH  131 (158)
T ss_dssp             GGTCCCSCSSEEEECTT---S----HHHHHTTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             hhccccccccccccccc---c----HHHHHHHhccccCCccccEEEEECCCCEEEE
Confidence                 355555555443   1    244446654      4678999999999974

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.69  E-value=3.5e-05  Score=73.38  Aligned_cols=108  Identities=12%  Similarity=0.102  Sum_probs=73.3

Q ss_pred             CCCCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH-Hhc
Q 044391          321 GSSRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ-LQA  395 (691)
Q Consensus       321 g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~-~~~  395 (691)
                      +.++++|++++++||.|.|||= +.||+.|  |+.-+. .|++.+   ..+.+|+.||. |     +-...+.|.+ ...
T Consensus        20 d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~---~~g~~VlgIS~-D-----s~~s~~~~~~~~~~   90 (194)
T d1uula_          20 NGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFS---DIGCEVLACSM-D-----SEYSHLAWTSIERK   90 (194)
T ss_dssp             TSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHH---TTTEEEEEEES-S-----CHHHHHHHHHSCGG
T ss_pred             CCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhc---cCceEEEEEec-C-----chhhhhhhhhhhhh
Confidence            3467789999999999999998 7778766  556688 999997   45799999995 4     2344556644 333


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCc------CCceEEEEeCCCCceec
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKF------SKKAILVPVDPQGRILN  439 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~------~~iP~LVvL~pqGkv~~  439 (691)
                      ...=..++||-+.|.  .+.+.+.|++      -..|...||||+|++..
T Consensus        91 ~~~~~~l~fpllsD~--~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~  138 (194)
T d1uula_          91 RGGLGQMNIPILADK--TKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQ  138 (194)
T ss_dssp             GTCCCSCSSCEEECT--TCHHHHHHTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             hccccCCCcceeeCC--cchHHHHcCCeeccCCceEEEEEEECCCCeEEE
Confidence            333334555433332  2234444666      23678999999999864

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.59  E-value=0.00012  Score=65.25  Aligned_cols=108  Identities=12%  Similarity=0.007  Sum_probs=69.9

Q ss_pred             ceecCCCCceeecceecCc--EEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHH
Q 044391          317 PVVDGSSRTRVNIEVLRRK--HVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFE  391 (691)
Q Consensus       317 ~l~~g~~~~kV~Is~L~gK--~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~  391 (691)
                      +-+-..+|+.|++++++||  .|+++|.+.|||.|  ++.-|. .|++.+   +.+++|+-|+. |     +....++|-
T Consensus        11 F~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~---~~~~~vi~vs~-d-----~~~~~~~~~   81 (153)
T d1xvwa1          11 FTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFE---NDDSAALAISV-G-----PPPTHKIWA   81 (153)
T ss_dssp             CEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTS---SSSEEEEEEES-C-----CHHHHHHHH
T ss_pred             eEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhc---ccccccccccc-h-----hhhHHHHHh
Confidence            3344567888999999996  44445668899876  456688 888876   45799999985 4     355556775


Q ss_pred             HHhcCCCeeeecCCCCCchHHHHHHHHhhCcC----Cc--eEEEEeCCCCceec
Q 044391          392 QLQAMMPWYTVQHPTIIEPAVVKYAKEVWKFS----KK--AILVPVDPQGRILN  439 (691)
Q Consensus       392 ~~~~~MPWyAVp~~d~i~~~~~r~ike~f~~~----~i--P~LVvL~pqGkv~~  439 (691)
                      +-. .+||-.+--.+. +..    +.+.|++-    +.  |+.+|||++|++..
T Consensus        82 ~~~-~~~~~~l~~~~~-~~~----~~~~ygv~~~~~g~~~r~tfvID~~G~I~~  129 (153)
T d1xvwa1          82 TQS-GFTFPLLSDFWP-HGA----VSQAYGVFNEQAGIANRGTFVVDRSGIIRF  129 (153)
T ss_dssp             HHH-TCCSCEEECTTT-TTH----HHHHTTCEETTTTEECSEEEEECTTSBEEE
T ss_pred             hhh-ccceeEEecccc-cch----hHHHhhhhhhccCceeeeEEEECCCCEEEE
Confidence            543 455544322211 122    33446652    33  46889999999963

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=97.45  E-value=0.0002  Score=66.13  Aligned_cols=108  Identities=14%  Similarity=0.153  Sum_probs=73.8

Q ss_pred             CceecCCCC--ceeecceecCc-EEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHH
Q 044391          316 QPVVDGSSR--TRVNIEVLRRK-HVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQ  388 (691)
Q Consensus       316 ~~l~~g~~~--~kV~Is~L~gK-~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~  388 (691)
                      +|-++|.+.  ..+.+++++|| .|.|+|= +.|||.|  ++.-++ .|++++++   +.+||-||. |     +...+.
T Consensus        12 l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~---g~~Vvgis~-d-----~~~~~~   82 (170)
T d1zofa1          12 APAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK---GFNVIGVSI-D-----SEQVHF   82 (170)
T ss_dssp             EEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT---TEEEEEEES-S-----CHHHHH
T ss_pred             cccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccC---CeeEecccc-c-----chhhHH
Confidence            455666553  47999999997 5777764 7888665  667788 99999844   599999985 4     356667


Q ss_pred             HHHHHhc------CCCeeeecCCCCCchHHHHHHHHhhCcC-----CceEEEEeCCCCceec
Q 044391          389 KFEQLQA------MMPWYTVQHPTIIEPAVVKYAKEVWKFS-----KKAILVPVDPQGRILN  439 (691)
Q Consensus       389 ~F~~~~~------~MPWyAVp~~d~i~~~~~r~ike~f~~~-----~iP~LVvL~pqGkv~~  439 (691)
                      +|.+...      .+|+..+--++       +.+.+.|++.     ..|...||||+|++..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~D~~-------~~v~~~ygv~~~~~~~~r~tfvID~~G~I~~  137 (170)
T d1zofa1          83 AWKNTPVEKGGIGQVSFPMVADIT-------KSISRDYDVLFEEAIALRGAFLIDKNMKVRH  137 (170)
T ss_dssp             HHHTSCGGGTCCCCCSSCEEECTT-------SHHHHHTTCEETTTEECEEEEEEETTTEEEE
T ss_pred             HHHhhhhhcccccCcccccccccc-------cHHHHHcCCCccccceeEEEEEEcCCCeEEE
Confidence            7765442      34444443332       2344446662     4688999999999964

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00045  Score=65.16  Aligned_cols=116  Identities=11%  Similarity=0.029  Sum_probs=78.1

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccC--CCCCChhhHHHHHHHhcC
Q 044391          322 SSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDR--SIAWDEGYRQKFEQLQAM  396 (691)
Q Consensus       322 ~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~--s~~W~D~d~~~F~~~~~~  396 (691)
                      .+|+.|+++.++||.|++-+-|.||+.+  +..-|+ +|++.+.   ..|+|+-+|.-+-  ..+.++++-..|-.+...
T Consensus        12 ~~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~---~g~~Il~fP~nqF~~qE~~~~~ei~~f~~~~~~   88 (184)
T d2f8aa1          12 AGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGP---RGLVVLGFPCNQFGHQENAKNEEILNSLKYVRP   88 (184)
T ss_dssp             TCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSS
T ss_pred             CCCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcc---cceeEEEeeccccccccccchhhhhhhhheecc
Confidence            3466799999999999999999999765  478899 9999884   4699999997542  244556666666544221


Q ss_pred             CCeeeecCC--CCC------chHHHHHHHHhhC--------cCCce-----------------EEEEeCCCCceecc
Q 044391          397 MPWYTVQHP--TII------EPAVVKYAKEVWK--------FSKKA-----------------ILVPVDPQGRILNQ  440 (691)
Q Consensus       397 MPWyAVp~~--d~i------~~~~~r~ike~f~--------~~~iP-----------------~LVvL~pqGkv~~~  440 (691)
                      -.=|.+.||  .++      .-++-++|++...        ..+.|                 +=.++|++|+++..
T Consensus        89 ~~~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLIdr~G~vv~r  165 (184)
T d2f8aa1          89 GGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRR  165 (184)
T ss_dssp             CTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEE
T ss_pred             ccccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEECCCCCEEEE
Confidence            111222321  111      2367889987643        22334                 34799999999753

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.00022  Score=60.69  Aligned_cols=74  Identities=11%  Similarity=-0.073  Sum_probs=49.9

Q ss_pred             ceecCcEEEEEEecCCCChhhh--HH---HH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeec
Q 044391          330 EVLRRKHVLLLISSLDLSDEEI--LV---LH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQ  403 (691)
Q Consensus       330 s~L~gK~VlL~fSal~~~~~e~--~~---L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp  403 (691)
                      ...+||.|+|.|.+.||++|..  +.   +. +++.++     ++..+-+.+ +     .+.                  
T Consensus        18 ~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~-----~~~~~~~~~-~-----~~~------------------   68 (117)
T d2fwha1          18 VEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-----DTVLLQANV-T-----AND------------------   68 (117)
T ss_dssp             HHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-----TSEEEEEEC-T-----TCC------------------
T ss_pred             HHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc-----ceEEEeccc-c-----cch------------------
Confidence            3456999999999999999853  22   23 544432     344544433 1     111                  


Q ss_pred             CCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          404 HPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       404 ~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                             ..-+.+.+.|++++.|+++++||+|+++.
T Consensus        69 -------~~~~~l~~~~~v~~~Pt~~~~~~~G~~~~   97 (117)
T d2fwha1          69 -------AQDVALLKHLNVLGLPTILFFDGQGQEHP   97 (117)
T ss_dssp             -------HHHHHHHHHTTCCSSSEEEEECTTSCBCG
T ss_pred             -------hHHHHHHhhhehhhceEEEEEeCCCcEEe
Confidence                   12344667799999999999999998765

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.28  E-value=0.00038  Score=65.70  Aligned_cols=101  Identities=14%  Similarity=0.126  Sum_probs=70.3

Q ss_pred             CCceeecceecCcEEEEEEecCC-CChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc---
Q 044391          323 SRTRVNIEVLRRKHVLLLISSLD-LSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA---  395 (691)
Q Consensus       323 ~~~kV~Is~L~gK~VlL~fSal~-~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~---  395 (691)
                      ...+|++++++||.|.|||=-.+ +|.|  ++.-+. .|++.++   .+.+|+.||. |     +-..++.|-+-..   
T Consensus        19 ~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~---~~~~v~gIS~-D-----s~~sh~~f~~~~~~~~   89 (186)
T d1n8ja_          19 EFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQK---LGVDVYSVST-D-----THFTHKAWHSSSETIA   89 (186)
T ss_dssp             EEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHH---TTEEEEEEES-S-----CHHHHHHHHHHCTTGG
T ss_pred             eeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhccc---ccEEEEeccc-c-----CHHHHHHHhccccccc
Confidence            34579999999999999998555 5545  556688 9999874   4689999995 5     2556678876544   


Q ss_pred             CCCeeeecCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceec
Q 044391          396 MMPWYTVQHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILN  439 (691)
Q Consensus       396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~  439 (691)
                      .+|...+--++       +.+.+.|++-      ..|...|+||+|++..
T Consensus        90 ~~~fpllsD~~-------~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~  132 (186)
T d1n8ja_          90 KIKYAMIGDPT-------GALTRNFDNMREDEGLADRATFVVDPQGIIQA  132 (186)
T ss_dssp             GCCSEEEECTT-------SHHHHHTTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             cccccccccHH-------HHHHHHhCCCcccCCcceeeEEEECchheEEE
Confidence            34444443332       3444557763      3588999999999853

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.00059  Score=62.21  Aligned_cols=106  Identities=11%  Similarity=0.058  Sum_probs=67.7

Q ss_pred             ceecCCCCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH
Q 044391          317 PVVDGSSRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ  392 (691)
Q Consensus       317 ~l~~g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~  392 (691)
                      +-+-..+|+.|++++++||.|.|+|= +.|||.|  +++-|. .|.+     ..+.++|.|+. |     +....++|..
T Consensus        27 F~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~-----~~~~~vv~Is~-d-----~~~~~~~~~~   95 (164)
T d1qxha_          27 FTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATE-----IDNTVVLCISA-D-----LPFAQSRFCG   95 (164)
T ss_dssp             CEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHT-----STTEEEEEEES-S-----CHHHHTTCCS
T ss_pred             eEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHh-----hccceeeeEEc-C-----CHHHHHHHHH
Confidence            34455788899999999998888664 6688766  455566 6654     24689999986 3     2344455544


Q ss_pred             Hhc-CCCeeeecCCCCCchHHHHHHHHhhCc-------CC--ceEEEEeCCCCceecc
Q 044391          393 LQA-MMPWYTVQHPTIIEPAVVKYAKEVWKF-------SK--KAILVPVDPQGRILNQ  440 (691)
Q Consensus       393 ~~~-~MPWyAVp~~d~i~~~~~r~ike~f~~-------~~--iP~LVvL~pqGkv~~~  440 (691)
                      ... .-|-++..+++   ..    +.+.|++       .+  .|...|+|++|+++..
T Consensus        96 ~~~~~~~~~~~~d~~---~~----~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~  146 (164)
T d1qxha_          96 AEGLNNVITLSTFRN---AE----FLQAYGVAIADGPLKGLAARAVVVIDENDNVIFS  146 (164)
T ss_dssp             STTCTTEEEEECTTC---HH----HHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred             HhCCCcceeeccccc---hh----hHHhcCeEeecCcccCcccCEEEEEcCCCEEEEE
Confidence            332 33444444443   22    2334554       22  3789999999999853

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00024  Score=62.03  Aligned_cols=77  Identities=8%  Similarity=0.032  Sum_probs=51.1

Q ss_pred             ecCcEEEEEEecC-------CCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeee
Q 044391          332 LRRKHVLLLISSL-------DLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYT  401 (691)
Q Consensus       332 L~gK~VlL~fSal-------~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyA  401 (691)
                      -+||.|+++|.|.       ||++|..  +.+. +.++.    .+++.++.|-+ |      +     +.++...     
T Consensus        19 ~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~----~~~~~~~~vdv-~------~-----~~~~~d~-----   77 (119)
T d1woua_          19 HNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHI----SEGCVFIYCQV-G------E-----KPYWKDP-----   77 (119)
T ss_dssp             TTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGC----CTTEEEEEEEC-C------C-----HHHHHCT-----
T ss_pred             cCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhc----CCceEEEEEEC-C------C-----Ccccchh-----
Confidence            3589999999885       9998843  5555 55443    45688888865 2      1     1111110     


Q ss_pred             ecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          402 VQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       402 Vp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                                 -..+.+.|+++++|++++++..++++..
T Consensus        78 -----------~~~l~~~~~V~~iPT~i~~~~g~~l~~~  105 (119)
T d1woua_          78 -----------NNDFRKNLKVTAVPTLLKYGTPQKLVES  105 (119)
T ss_dssp             -----------TCHHHHHHCCCSSSEEEETTSSCEEEGG
T ss_pred             -----------hhhHHHhCCeEEEEEEEEEECCeEEeee
Confidence                       1235567999999999999876666543

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=96.83  E-value=0.0017  Score=59.10  Aligned_cols=107  Identities=12%  Similarity=0.078  Sum_probs=69.2

Q ss_pred             ceecCCCCceeecceecCcEEEEEEecCC-CChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH
Q 044391          317 PVVDGSSRTRVNIEVLRRKHVLLLISSLD-LSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ  392 (691)
Q Consensus       317 ~l~~g~~~~kV~Is~L~gK~VlL~fSal~-~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~  392 (691)
                      +-+-+.+++.|.+++++||.|.|+|=..| ||.|  ++.-|+ .|++++     +.+++.||. |     +-...+.|..
T Consensus        25 F~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~-----~~~vi~iS~-d-----~~~~~~~~~~   93 (164)
T d1q98a_          25 FILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS-----NTIVLCISA-D-----LPFAQARFCG   93 (164)
T ss_dssp             CEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST-----TEEEEEEES-S-----CHHHHTTCTT
T ss_pred             cEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc-----cceEEeecC-C-----cHHHHHHHHH
Confidence            33446677889999999999999888554 5435  556688 888874     478999986 4     2345566655


Q ss_pred             HhcCCCeeeecCCCCCchHHHHHHHHhhCc-------CC--ceEEEEeCCCCceecc
Q 044391          393 LQAMMPWYTVQHPTIIEPAVVKYAKEVWKF-------SK--KAILVPVDPQGRILNQ  440 (691)
Q Consensus       393 ~~~~MPWyAVp~~d~i~~~~~r~ike~f~~-------~~--iP~LVvL~pqGkv~~~  440 (691)
                      -..-.++..+.-..  +...    .+.+++       .|  .|...|+|++|++...
T Consensus        94 ~~~~~~~~~~~~~~--~~~~----~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~  144 (164)
T d1q98a_          94 AEGIENAKTVSTFR--NHAL----HSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHS  144 (164)
T ss_dssp             TTTCTTEEEEECTT--CTHH----HHHTTCEECSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred             HhCCcccccccccc--chhH----HHhhceecccCccccCcccEEEEECCCCEEEEE
Confidence            44444454443321  2222    222333       23  3889999999999853

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=96.69  E-value=0.0021  Score=53.85  Aligned_cols=69  Identities=10%  Similarity=-0.002  Sum_probs=48.3

Q ss_pred             CcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHH
Q 044391          334 RKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAV  412 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~  412 (691)
                      +|.|+++|.+.||++|.-.  . .++++......++.++.|-+        |..                          
T Consensus        19 ~kpvlv~F~a~wC~~C~~~--~p~~~~~~~~~~~~~~~~~vd~--------d~~--------------------------   62 (107)
T d1dbya_          19 SVPVLVDFWAPWCGPCRII--APVVDEIAGEYKDKLKCVKLNT--------DES--------------------------   62 (107)
T ss_dssp             SSCEEEEEECTTCHHHHHH--HHHHHHHHHHTTTTCEEEEEET--------TTC--------------------------
T ss_pred             CCcEEEEEECCCCCCcccc--ChHHHHHHHhhcccceEEEEec--------ccc--------------------------
Confidence            6889999999999887532  3 44444333356788888754        211                          


Q ss_pred             HHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          413 VKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       413 ~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                       ..|.+.|++++.|+++++. +|+.+..
T Consensus        63 -~~l~~~~~V~~~Pt~~~~~-~G~~v~~   88 (107)
T d1dbya_          63 -PNVASEYGIRSIPTIMVFK-GGKKCET   88 (107)
T ss_dssp             -HHHHHHHTCCSSCEEEEES-SSSEEEE
T ss_pred             -hhHHHHhcccceEEEEEEE-CCeEEEE
Confidence             1255679999999999996 7987743

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.0017  Score=61.56  Aligned_cols=109  Identities=11%  Similarity=0.066  Sum_probs=72.3

Q ss_pred             cCCCCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH-Hh
Q 044391          320 DGSSRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ-LQ  394 (691)
Q Consensus       320 ~g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~-~~  394 (691)
                      .+.++.+|++++++||.|.|||= +.+|+.|  |+.-|. .|++.+   ..+.+|+=||. |     +-...+.|.+ ..
T Consensus        20 ~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~---~~g~~vigIS~-D-----~~~~~~~~~~~~~   90 (197)
T d1qmva_          20 VDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFR---KLGCEVLGVSV-D-----SQFTHLAWINTPR   90 (197)
T ss_dssp             ETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHH---TTTEEEEEEES-S-----CHHHHHHHHTSCG
T ss_pred             eCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhc---cCCcEEEEEec-C-----CHHHHHhhhcchh
Confidence            45567789999999999999885 6667666  556688 999998   45799999985 3     2344455643 22


Q ss_pred             cCCCeeeecCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceec
Q 044391          395 AMMPWYTVQHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILN  439 (691)
Q Consensus       395 ~~MPWyAVp~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~  439 (691)
                      ..+-=.-++||=+.|.  .+.+.+.|++-      ..|...++||+|++..
T Consensus        91 ~~~~~~~~~fpll~D~--~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~  139 (197)
T d1qmva_          91 KEGGLGPLNIPLLADV--TRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQ  139 (197)
T ss_dssp             GGTCCCSCSSCEEECT--TCHHHHHTTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             hhcCcCCCccceEecc--chHHHHHhCCCcccCCeeeEEEEEECCCCcEEE
Confidence            2111123455433222  33456667773      3588999999999854

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.63  E-value=0.0089  Score=53.96  Aligned_cols=106  Identities=7%  Similarity=-0.001  Sum_probs=68.3

Q ss_pred             ceecCCCCceeecceecCcEEEEEEe-cCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH
Q 044391          317 PVVDGSSRTRVNIEVLRRKHVLLLIS-SLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ  392 (691)
Q Consensus       317 ~l~~g~~~~kV~Is~L~gK~VlL~fS-al~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~  392 (691)
                      +-+-..+|+.|++++++||.|.|+|= +.|||.|..  .-|. .|++.     .+.++|=|+. |     +....++|..
T Consensus        25 F~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~-----~~~~vv~Is~-d-----~~~~~~~~~~   93 (163)
T d1psqa_          25 FSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-----DNTVVLTVSM-D-----LPFAQKRWCG   93 (163)
T ss_dssp             CEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-----TTEEEEEEES-S-----CHHHHHHHHH
T ss_pred             eEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhh-----cccceEEEEe-c-----cHHHHHHHHH
Confidence            33456788899999999998888775 667766654  3344 44433     3588888885 3     3556778877


Q ss_pred             HhcCCCeeeecCCCCCchHHHHHHHHhhCcCC------ceEEEEeCCCCceec
Q 044391          393 LQAMMPWYTVQHPTIIEPAVVKYAKEVWKFSK------KAILVPVDPQGRILN  439 (691)
Q Consensus       393 ~~~~MPWyAVp~~d~i~~~~~r~ike~f~~~~------iP~LVvL~pqGkv~~  439 (691)
                      ....+++..+.-..  +..    +.+.|++-.      .+..+|+|++|++..
T Consensus        94 ~~~~~~~~~~~~~~--~~~----~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y  140 (163)
T d1psqa_          94 AEGLDNAIMLSDYF--DHS----FGRDYALLINEWHLLARAVFVLDTDNTIRY  140 (163)
T ss_dssp             HHTCTTSEEEECTT--TCH----HHHHHTCBCTTTCSBCCEEEEECTTCBEEE
T ss_pred             HcCCcceeeecccc--chh----HHHhheeecccccceeEEEEEECCCCEEEE
Confidence            76666555444321  122    223355421      246899999999974

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.60  E-value=0.0014  Score=64.04  Aligned_cols=107  Identities=13%  Similarity=0.101  Sum_probs=68.4

Q ss_pred             CCCCceeeccee---cCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH
Q 044391          321 GSSRTRVNIEVL---RRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL  393 (691)
Q Consensus       321 g~~~~kV~Is~L---~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~  393 (691)
                      ..+| ++..++.   +||.|.|||= +.|||.|  ++.-+. .|++++++   +.+||-||. |     +....+.|.+-
T Consensus        14 t~~G-~i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~---g~~vigiS~-D-----s~~sh~~w~~~   83 (237)
T d2zcta1          14 TDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL---GVDLIGLSV-D-----SVFSHIKWKEW   83 (237)
T ss_dssp             ETTE-EEEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHT---TEEEEEEES-S-----CHHHHHHHHHH
T ss_pred             cCCC-CEEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccC---CcceeeccC-C-----cHHHHHHHhhh
Confidence            3444 4665553   7887777664 7788766  566788 99999855   599999996 4     24455566543


Q ss_pred             hcCCCeeeecCCCCCchHHHHHHHHhhCc-------CCceEEEEeCCCCceec
Q 044391          394 QAMMPWYTVQHPTIIEPAVVKYAKEVWKF-------SKKAILVPVDPQGRILN  439 (691)
Q Consensus       394 ~~~MPWyAVp~~d~i~~~~~r~ike~f~~-------~~iP~LVvL~pqGkv~~  439 (691)
                      .....-..++||-+.|.  -+.+.+.|++       ...|...||||+|++..
T Consensus        84 ~~~~~~~~l~fpllsD~--~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~  134 (237)
T d2zcta1          84 IERHIGVRIPFPIIADP--QGTVARRLGLLHAESATHTVRGVFIVDARGVIRT  134 (237)
T ss_dssp             HHHHHCCCCCSCEEECG--GGHHHHHTTCC----CCTTCCEEEEECTTSBEEE
T ss_pred             hhhhcccccccccccCc--chHHHHHcCCccccccccceeeeEEECCCCEEEE
Confidence            32221234555432222  2345555776       46899999999999843

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=96.41  E-value=0.0031  Score=52.33  Aligned_cols=66  Identities=11%  Similarity=-0.001  Sum_probs=46.1

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|+++|.+.||++|..  +.+. +.++.    ...+.++-|..        |+..                       
T Consensus        17 ~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~----~~~~~~~~v~~--------d~~~-----------------------   61 (104)
T d1fb6a_          17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEY----SGKIAVYKLNT--------DEAP-----------------------   61 (104)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHT----TTTCEEEEEET--------TTCH-----------------------
T ss_pred             CCcEEEEEEcCccCCccccCchhHHHHHhh----cCccceeEEec--------ccch-----------------------
Confidence            577999999999998853  3444 44443    44566666653        2211                       


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          .+.+.|++++.|+++++ .+|+.+.
T Consensus        62 ----~l~~~~~V~~~Pt~~~~-~~G~~v~   85 (104)
T d1fb6a_          62 ----GIATQYNIRSIPTVLFF-KNGERKE   85 (104)
T ss_dssp             ----HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ----hhhhhcceeeeeEEEEE-EcCeEEE
Confidence                25667999999999998 5898774

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.40  E-value=0.0024  Score=58.00  Aligned_cols=104  Identities=12%  Similarity=0.075  Sum_probs=58.5

Q ss_pred             ceecCCCCceeecceecCcEEEEEEecC-CCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH
Q 044391          317 PVVDGSSRTRVNIEVLRRKHVLLLISSL-DLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ  392 (691)
Q Consensus       317 ~l~~g~~~~kV~Is~L~gK~VlL~fSal-~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~  392 (691)
                      +-+-..+|+.|.+++|+||.|+|+|=.. |||.|  ++.-|. .|++      .+.+||.|++ |.     ..+.++|..
T Consensus        26 F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~------~g~~vv~Is~-d~-----~~~~~~~~~   93 (166)
T d1xvqa_          26 FTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA------SGATVLCVSK-DL-----PFAQKRFCG   93 (166)
T ss_dssp             CEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH------TTCEEEEEES-SC-----HHHHTTCC-
T ss_pred             eEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhhccc------cccccccccc-ch-----HHHHHHHHH
Confidence            4455567778999999999999988754 55546  444454 4443      2478999986 31     223333432


Q ss_pred             Hh-cCCCeeeecCCCCCchHHHHHHHHhhCc-------CC--ceEEEEeCCCCceecc
Q 044391          393 LQ-AMMPWYTVQHPTIIEPAVVKYAKEVWKF-------SK--KAILVPVDPQGRILNQ  440 (691)
Q Consensus       393 ~~-~~MPWyAVp~~d~i~~~~~r~ike~f~~-------~~--iP~LVvL~pqGkv~~~  440 (691)
                      .. ...+.+.-++..    ...+    .+++       .+  .|..+|+|++|+++..
T Consensus        94 ~~~~~~~~~~~~~~~----~~~~----~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~  143 (166)
T d1xvqa_          94 AEGTENVMPASAFRD----SFGE----DYGVTIADGPMAGLLARAIVVIGADGNVAYT  143 (166)
T ss_dssp             -----CEEEEECTTS----SHHH----HTTCBBCSSTTTTSBCSEEEEECTTSBEEEE
T ss_pred             HhCCcccccccchhH----HHHH----HhCeeeccCcccCceeeEEEEEeCCCEEEEE
Confidence            22 112222222221    2222    2222       11  3689999999999853

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.22  E-value=0.0041  Score=52.49  Aligned_cols=69  Identities=12%  Similarity=0.046  Sum_probs=47.8

Q ss_pred             ecCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391          332 LRRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII  408 (691)
Q Consensus       332 L~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i  408 (691)
                      -.||.|+++|.+.||++|..  +.+. ++++.+    +...++-|-+        |+.                      
T Consensus        23 ~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~----~~~~~~~i~~--------d~~----------------------   68 (111)
T d1xwaa_          23 ASGKLVVLDFFATWCGPCKMISPKLVELSTQFA----DNVVVLKVDV--------DEC----------------------   68 (111)
T ss_dssp             HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTEEEEEEET--------TTC----------------------
T ss_pred             cCCCEEEEEEECCcccCccccchhHHHHhhhcc----cceEEEEEEe--------ecC----------------------
Confidence            35899999999999998843  5566 666554    3355555532        211                      


Q ss_pred             chHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          409 EPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                       +    .+.+.|++++.|+++++ .+|+.+..
T Consensus        69 -~----~l~~~~~V~~~Pt~~~~-~~G~~v~~   94 (111)
T d1xwaa_          69 -E----DIAMEYNISSMPTFVFL-KNGVKVEE   94 (111)
T ss_dssp             -H----HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -c----chhhcCCCccccEEEEE-ECCEEEEE
Confidence             1    23467999999999999 68988754

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=96.17  E-value=0.0047  Score=52.48  Aligned_cols=68  Identities=9%  Similarity=0.250  Sum_probs=46.9

Q ss_pred             CcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHH
Q 044391          334 RKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAV  412 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~  412 (691)
                      +|.|+++|.+.||++|..  +. .++++.+. -.++.++.|-+        |+.                          
T Consensus        26 ~k~vvv~F~a~wC~~C~~--~~p~~~~~~~~-~~~~~~~~vd~--------d~~--------------------------   68 (113)
T d1ti3a_          26 QKLIVVDFTASWCPPCKM--IAPIFAELAKK-FPNVTFLKVDV--------DEL--------------------------   68 (113)
T ss_dssp             SSEEEEEEECSSCHHHHH--HHHHHHHHHHH-CSSEEEEEEET--------TTC--------------------------
T ss_pred             CCEEEEEEEcCccccchh--hhhhhhhhhcc-CCCceEEeeee--------ecc--------------------------
Confidence            689999999999999853  34 55555543 34455555432        211                          


Q ss_pred             HHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          413 VKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       413 ~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                       +.|.+.|++++.|+++++. +|+.+..
T Consensus        69 -~~l~~~~~I~~~Pt~~~~k-~G~~v~~   94 (113)
T d1ti3a_          69 -KAVAEEWNVEAMPTFIFLK-DGKLVDK   94 (113)
T ss_dssp             -HHHHHHHHCSSTTEEEEEE-TTEEEEE
T ss_pred             -ccccccCeecccceEEEEE-CCEEEEE
Confidence             1245678999999999996 9988754

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.17  E-value=0.0093  Score=49.46  Aligned_cols=75  Identities=9%  Similarity=-0.009  Sum_probs=46.5

Q ss_pred             cceecCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCC
Q 044391          329 IEVLRRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHP  405 (691)
Q Consensus       329 Is~L~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~  405 (691)
                      +..+.++.+.++|++.||++|.-  +.+. +-.+....  ....|.++-+ |       .++                + 
T Consensus        10 ~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~--~~~~v~~~~i-d-------~~~----------------~-   62 (107)
T d1a8la2          10 IRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKA--GKGKILGDMV-E-------AIE----------------Y-   62 (107)
T ss_dssp             HTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHT--TCCCEEEEEE-E-------GGG----------------C-
T ss_pred             HHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhc--cCCcEEEEEe-c-------ccc----------------c-
Confidence            34556777888999999999843  5565 44443322  2234555543 2       221                1 


Q ss_pred             CCCchHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          406 TIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       406 d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                              ..|.+.|+++++|++++ ..+|+.+.
T Consensus        63 --------~~l~~~~~V~~vPTi~i-~~~G~~~~   87 (107)
T d1a8la2          63 --------PEWADQYNVMAVPKIVI-QVNGEDRV   87 (107)
T ss_dssp             --------HHHHHHTTCCSSCEEEE-EETTEEEE
T ss_pred             --------cccccccccccceEEEE-EeCCeEEE
Confidence                    12567799999999765 56887764

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=96.13  E-value=0.0051  Score=52.33  Aligned_cols=68  Identities=7%  Similarity=0.042  Sum_probs=46.1

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .+|.|+++|.+.||++|..  +.+. +.++.+    .+..++-|-+        |+                        
T Consensus        23 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~----~~v~~~~vd~--------d~------------------------   66 (112)
T d1ep7a_          23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYA----GKVIFLKVDV--------DA------------------------   66 (112)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTSEEEEEET--------TT------------------------
T ss_pred             cCCeEEEEEEcCCcCCCcccchhhhhhhhccc----ceEEEEEeec--------cc------------------------
Confidence            3789999999999998843  4555 555543    3355554432        21                        


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                         -+.+.+.|++++.|+++++ .+|+.+..
T Consensus        67 ---~~~l~~~~~v~~~Pt~~~~-~~G~~v~~   93 (112)
T d1ep7a_          67 ---VAAVAEAAGITAMPTFHVY-KDGVKADD   93 (112)
T ss_dssp             ---THHHHHHHTCCBSSEEEEE-ETTEEEEE
T ss_pred             ---cccccccccccCCCEEEEE-ECCEEEEE
Confidence               1135567899999999988 48987644

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.10  E-value=0.0055  Score=52.09  Aligned_cols=70  Identities=11%  Similarity=0.069  Sum_probs=48.3

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|+|++||.+.||++|.-  +.|. +..+.+      ..+.+|-+ +    . +.+                       .
T Consensus        26 ~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~------~~v~~v~~-~----~-~~~-----------------------~   70 (115)
T d1zmaa1          26 KETATFFIGRKTCPYCRKFAGTLSGVVAETK------AHIYFINS-E----E-PSQ-----------------------L   70 (115)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHHC------CCCEEEET-T----C-GGG-----------------------H
T ss_pred             CCCEEEEEcCCCCccHHHHHHHHHHHHHHhh------hhhhhhee-e----c-ccc-----------------------c
Confidence            788999999999998843  5676 655543      34667654 1    1 111                       1


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                      ...+.+.+.|++++.|+|+++. +|+++.
T Consensus        71 ~~~~~~~~~~~V~~~PTli~~~-~gk~~~   98 (115)
T d1zmaa1          71 NDLQAFRSRYGIPTVPGFVHIT-DGQINV   98 (115)
T ss_dssp             HHHHHHHHHHTCCSSCEEEEEE-TTEEEE
T ss_pred             ccccccccccccccccEEEEEE-CCEEEE
Confidence            3344567789999999999996 787663

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.00084  Score=58.54  Aligned_cols=69  Identities=9%  Similarity=0.077  Sum_probs=42.4

Q ss_pred             cCcEEEEEEecCCCChhhh--HHH---H-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCC
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVL---H-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPT  406 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L---~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d  406 (691)
                      +||.|+++|.+.||++|..  +.+   . +++ +    .++  +|.|.+ |       .++.                +.
T Consensus        24 ~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~-~----~~~--fv~v~v-d-------~~~~----------------~~   72 (135)
T d1sena_          24 SGLPLMVIIHKSWCGACKALKPKFAESTEISE-L----SHN--FVMVNL-E-------DEEE----------------PK   72 (135)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHTCHHHHH-H----HTT--SEEEEE-E-------GGGS----------------CS
T ss_pred             cCCcEEEEEEecCCCCceecchhhhhhHHHHH-h----cCC--cEEEeC-C-------CCcC----------------HH
Confidence            5999999999999988853  333   2 333 2    233  466665 2       2110                00


Q ss_pred             CCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          407 IIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       407 ~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                           ..+   ...+..+.|+++++||+|+++..
T Consensus        73 -----~~~---~~~~~~~~Pt~~~~d~~G~~~~~   98 (135)
T d1sena_          73 -----DED---FSPDGGYIPRILFLDPSGKVHPE   98 (135)
T ss_dssp             -----CGG---GCTTCSCSSEEEEECTTSCBCTT
T ss_pred             -----HHH---HHhhcccceeEEEECCCCeEEEE
Confidence                 000   01344568999999999998864

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.99  E-value=0.0079  Score=51.15  Aligned_cols=68  Identities=12%  Similarity=0.295  Sum_probs=45.2

Q ss_pred             CcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHH
Q 044391          334 RKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAV  412 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~  412 (691)
                      +|.|+++|.+.||++|..  +. .++++.+. -.+  ++++-+ |.     |+.                          
T Consensus        28 ~~~vlv~F~a~wC~~C~~--~~p~~~~l~~~-~~~--~~~~~v-d~-----~~~--------------------------   70 (114)
T d1xfla_          28 KTLVVVDFTASWCGPCRF--IAPFFADLAKK-LPN--VLFLKV-DT-----DEL--------------------------   70 (114)
T ss_dssp             TCEEEEEEECTTCHHHHH--HHHHHHHHHHH-CSS--EEEEEE-ET-----TTS--------------------------
T ss_pred             CCeEEEEEEcCCCCCccc--cccchhhhccc-ccc--cceeEE-Ee-----eec--------------------------
Confidence            789999999999999853  23 44454433 223  555544 21     211                          


Q ss_pred             HHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          413 VKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       413 ~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                       ..+.+.|++++.|+++++ .+|+.+..
T Consensus        71 -~~l~~~~~V~~~Pt~~~~-~~G~~v~~   96 (114)
T d1xfla_          71 -KSVASDWAIQAMPTFMFL-KEGKILDK   96 (114)
T ss_dssp             -HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -eeeccccceeeeEEEEEE-ECCEEEEE
Confidence             124566999999999999 68988754

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.014  Score=52.35  Aligned_cols=105  Identities=13%  Similarity=0.186  Sum_probs=66.0

Q ss_pred             ceecCCCCceeeccee--cCcEEEEEE-ecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHH
Q 044391          317 PVVDGSSRTRVNIEVL--RRKHVLLLI-SSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKF  390 (691)
Q Consensus       317 ~l~~g~~~~kV~Is~L--~gK~VlL~f-Sal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F  390 (691)
                      +-+-+.+|+.|.++++  +||.|.||| -+.|||.|.  +.-+. .|++++++    +.++=|+. |     +-...++|
T Consensus        14 f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~----~~~~~is~-d-----~~~~~~~f   83 (156)
T d2a4va1          14 LSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY----AAVFGLSA-D-----SVTSQKKF   83 (156)
T ss_dssp             CEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT----CEEEEEES-C-----CHHHHHHH
T ss_pred             eEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc----cceeeecc-c-----hhhhHHhh
Confidence            3445678889999999  567788876 478998774  46688 99999643    67777774 4     24455677


Q ss_pred             HHHhcCCCeeeecCCCCCchHHHHHHHHhhCcCCceE-----EEEeCCCCceec
Q 044391          391 EQLQAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAI-----LVPVDPQGRILN  439 (691)
Q Consensus       391 ~~~~~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~-----LVvL~pqGkv~~  439 (691)
                      -+-. ..|+..+.-++   .++    .+.|++...|.     =+++++||+++-
T Consensus        84 ~~~~-~l~f~~L~D~~---~~v----~~~ygv~~~~~~~~~r~~~i~~dg~i~~  129 (156)
T d2a4va1          84 QSKQ-NLPYHLLSDPK---REF----IGLLGAKKTPLSGSIRSHFIFVDGKLKF  129 (156)
T ss_dssp             HHHH-TCSSEEEECTT---CHH----HHHHTCBSSSSSCBCCEEEEEETTEEEE
T ss_pred             hccc-CccceeccchH---HHH----HHHcCCCccccCCeeEEEEEEECCeEEE
Confidence            6643 45644444333   233    33467655552     233336787754

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=95.84  E-value=0.011  Score=49.17  Aligned_cols=66  Identities=15%  Similarity=0.094  Sum_probs=46.8

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|+++|.+.||++|..  +.+. +.++.    ++.+.++-|-+        |+.                        
T Consensus        20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~----~~~~~~~~vd~--------d~~------------------------   63 (108)
T d1thxa_          20 EQPVLVYFWASWCGPCQLMSPLINLAANTY----SDRLKVVKLEI--------DPN------------------------   63 (108)
T ss_dssp             SSCEEEEEECTTCTTHHHHHHHHHHHHHHT----TTTCEEEEEES--------TTC------------------------
T ss_pred             CCcEEEEEECCCCCCccccchHHHHHHHhc----CCcceeceecc--------ccc------------------------
Confidence            478999999999999853  4455 54444    44577777643        211                        


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                         ..|.+.|++++.|+++++. +|+.+.
T Consensus        64 ---~~l~~~~~I~~~Pt~~~~~-~g~~v~   88 (108)
T d1thxa_          64 ---PTTVKKYKVEGVPALRLVK-GEQILD   88 (108)
T ss_dssp             ---HHHHHHTTCCSSSEEEEEE-TTEEEE
T ss_pred             ---HHHHHHhcccCCCEEEEEE-CCEEEE
Confidence               1355779999999999996 788764

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.70  E-value=0.0079  Score=51.42  Aligned_cols=66  Identities=3%  Similarity=-0.060  Sum_probs=44.3

Q ss_pred             CcEEEEEEecCCCChhhh--HHHHHHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchH
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLHLYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPA  411 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~  411 (691)
                      ++.|+++|++.||++|..  +.|.   ++.++ -.+..++.|-+        |+                          
T Consensus        26 ~~~vvv~F~a~wC~~C~~~~p~l~---~l~~~-~~~v~~~~vd~--------d~--------------------------   67 (113)
T d1r26a_          26 DILTVAWFTAVWCGPCKTIERPME---KIAYE-FPTVKFAKVDA--------DN--------------------------   67 (113)
T ss_dssp             SSCEEEEEECTTCHHHHHTHHHHH---HHHHH-CTTSEEEEEET--------TT--------------------------
T ss_pred             CCeEEEEEECCCCccchhhceecc---ccccc-ccccccccccc--------cc--------------------------
Confidence            578999999999999853  3444   43322 23455555422        21                          


Q ss_pred             HHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          412 VVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       412 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                       ...|.+.|++++.|+++++ .+|+.+.
T Consensus        68 -~~~l~~~~~V~~~Pt~~~~-~~G~~v~   93 (113)
T d1r26a_          68 -NSEIVSKCRVLQLPTFIIA-RSGKMLG   93 (113)
T ss_dssp             -CHHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -chhhHHHccccCCCEEEEE-ECCEEEE
Confidence             1246677999999999988 5788874

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.69  E-value=0.013  Score=48.60  Aligned_cols=67  Identities=6%  Similarity=-0.027  Sum_probs=44.5

Q ss_pred             CcEEEEEEecCCCChhhh--HHHHHHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchH
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLHLYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPA  411 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~  411 (691)
                      +|.|+++|.+.||++|..  +.|.   ++.+. -.+..++.|-+        |+.                         
T Consensus        18 ~~~vvv~F~a~wC~~C~~~~~~~~---~l~~~-~~~~~~~~vd~--------d~~-------------------------   60 (103)
T d1syra_          18 NELVIVDFFAEWCGPCKRIAPFYE---ECSKT-YTKMVFIKVDV--------DEV-------------------------   60 (103)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHH---HHHHH-CTTSEEEEEET--------TTT-------------------------
T ss_pred             CCcEEEEEeCCcccCcccccccch---hhhhc-ccceEEEeecc--------ccC-------------------------
Confidence            688999999999999854  3444   44332 12345555543        211                         


Q ss_pred             HHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          412 VVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       412 ~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                        ..+.+.|++++.|+++++- +|+.+..
T Consensus        61 --~~~~~~~~V~~~Pt~i~~k-~G~~v~~   86 (103)
T d1syra_          61 --SEVTEKENITSMPTFKVYK-NGSSVDT   86 (103)
T ss_dssp             --HHHHHHTTCCSSSEEEEEE-TTEEEEE
T ss_pred             --cceeeeeeeecceEEEEEE-CCEEEEE
Confidence              1245679999999999994 8988643

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=95.67  E-value=0.02  Score=52.32  Aligned_cols=102  Identities=15%  Similarity=0.133  Sum_probs=68.0

Q ss_pred             CCCceeecceecC-cEEEEEE-ecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh--
Q 044391          322 SSRTRVNIEVLRR-KHVLLLI-SSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ--  394 (691)
Q Consensus       322 ~~~~kV~Is~L~g-K~VlL~f-Sal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~--  394 (691)
                      .++.+|++++++| |.|.||| -+.|||.|  ++.-+. .|++++++   +.+||=||. |     +-...+.|.+-.  
T Consensus        14 ~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~---g~~vigIS~-D-----~~~~~~~~~~~~~~   84 (170)
T d2h01a1          14 NTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER---NVELLGCSV-D-----SKFTHLAWKKTPLS   84 (170)
T ss_dssp             SCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT---TEEEEEEES-S-----CHHHHHHHHTSCGG
T ss_pred             CCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcC---CeeEecccC-C-----cHHHHHhHhhhhhh
Confidence            4556799999998 7677766 47777655  666688 99999854   699999985 3     244556664321  


Q ss_pred             ----cCCCeeeecCCCCCchHHHHHHHHhhCc-----CCceEEEEeCCCCceec
Q 044391          395 ----AMMPWYTVQHPTIIEPAVVKYAKEVWKF-----SKKAILVPVDPQGRILN  439 (691)
Q Consensus       395 ----~~MPWyAVp~~d~i~~~~~r~ike~f~~-----~~iP~LVvL~pqGkv~~  439 (691)
                          ...|+.-+.-++   ..    +.+.|++     ...+...++||+|++..
T Consensus        85 ~~~~~~~~f~llsD~~---~~----~~~~ygv~~~~~~~~R~tfiId~~G~I~~  131 (170)
T d2h01a1          85 QGGIGNIKHTLISDIS---KS----IARSYDVLFNESVALRAFVLIDKQGVVQH  131 (170)
T ss_dssp             GTCCCSCSSEEEECTT---SH----HHHHTTCEETTTEECCEEEEECTTSBEEE
T ss_pred             hccccccCCceeEcCc---cH----HHHHhCCccccccceeeeEEEcCCCeEEE
Confidence                234555555543   22    3334555     23478999999999864

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=95.61  E-value=0.0063  Score=53.97  Aligned_cols=54  Identities=17%  Similarity=0.348  Sum_probs=43.9

Q ss_pred             hhhhhhcCCcEEEEEccCChhHH---HHHHHHHHHHHHHh--CCceeeEEecccChHHHHhhh
Q 044391          482 TILEWMKEERYICLYGGGDIEWI---RRFTTSAKAVARAA--QINLGMAYVGKNNAKERFRKI  539 (691)
Q Consensus       482 ~I~~~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a--~~~~E~v~Vgkdn~~e~v~~~  539 (691)
                      .++++  .||+|.|||.+  .||   ++|.+.+.++.++.  +..||+++|+.|...+.+++.
T Consensus        22 ~ls~l--~GK~vll~FwA--tWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~   80 (144)
T d1i5ga_          22 ALPSL--AGKTVFFYFSA--SWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDY   80 (144)
T ss_dssp             EGGGG--TTSEEEEEEEC--TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHH
T ss_pred             eHHHc--CCCEEEEEEEe--cCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHH
Confidence            35667  99999999999  676   99999999996653  458999999999877766553

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.0094  Score=49.61  Aligned_cols=69  Identities=9%  Similarity=0.044  Sum_probs=45.1

Q ss_pred             CcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHH
Q 044391          334 RKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAV  412 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~  412 (691)
                      +|.|+++|.+.||++|..  +. .++++......++.++-|-+        |+                  .        
T Consensus        20 ~~~v~v~F~a~wC~~C~~--~~~~~~~~a~~~~~~~~~~~vd~--------d~------------------~--------   63 (108)
T d2trxa_          20 DGAILVDFWAEWCGPCKM--IAPILDEIADEYQGKLTVAKLNI--------DQ------------------N--------   63 (108)
T ss_dssp             SSEEEEEEECTTCHHHHH--HHHHHHHHHHHTTTTEEEEEEET--------TT------------------C--------
T ss_pred             CCcEEEEEECCCCCCccc--cCcHHHHHHHHhhcceeeeeccc--------cc------------------h--------
Confidence            689999999999999852  23 44443322245565555522        21                  0        


Q ss_pred             HHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          413 VKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       413 ~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                       +.+.+.|++++.|+++++ .+|+.+..
T Consensus        64 -~~l~~~~~v~~~PT~~~~-~~G~~v~~   89 (108)
T d2trxa_          64 -PGTAPKYGIRGIPTLLLF-KNGEVAAT   89 (108)
T ss_dssp             -TTHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -hhHHHHhCCCcEEEEEEE-ECCEEEEE
Confidence             124567899999999998 58987743

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.02  Score=47.60  Aligned_cols=66  Identities=12%  Similarity=0.127  Sum_probs=43.6

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|++.|.+.||++|..  +.|. +.++.     .+.  +|+-+ |.     |+.                        
T Consensus        20 ~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~-----~~~--~~~~v-d~-----d~~------------------------   62 (105)
T d2ifqa1          20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-----SNV--IFLEV-DV-----DDC------------------------   62 (105)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHC-----TTS--EEEEE-ET-----TTC------------------------
T ss_pred             CCEEEEEEEcCCccchhhhhhhhhhhcccc-----ccc--eeeec-cc-----ccC------------------------
Confidence            578999999999998853  4455 44332     233  34433 21     211                        


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                         ..+.+.|++++.|+++++ .+|+.+..
T Consensus        63 ---~~~~~~~~V~~~Pt~~~~-~~G~~v~~   88 (105)
T d2ifqa1          63 ---QDVASECEVKCMPTFQFF-KKGQKVGE   88 (105)
T ss_dssp             ---HHHHHHTTCCBSSEEEEE-ETTEEEEE
T ss_pred             ---HhHHHHcCceEEEEEEEE-ECCEEEEE
Confidence               123456899999999999 68988854

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.92  E-value=0.018  Score=49.92  Aligned_cols=70  Identities=11%  Similarity=0.198  Sum_probs=41.0

Q ss_pred             ecCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391          332 LRRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII  408 (691)
Q Consensus       332 L~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i  408 (691)
                      -.++.|+|.|.+.|||+|.-  ++|. +-++..   +.++.++-|          |.++.                    
T Consensus        28 ~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~---~~~~~~~~V----------d~d~~--------------------   74 (119)
T d2es7a1          28 VGDGVILLSSDPRRTPEVSDNPVMIAELLREFP---QFDWQVAVA----------DLEQS--------------------   74 (119)
T ss_dssp             CCSEEEEECCCSCC----CCHHHHHHHHHHTCT---TSCCEEEEE----------CHHHH--------------------
T ss_pred             CCCcEEEEeecCCCCccHHHHHHHHHHHHHhcC---CCceEEEEE----------ECCCC--------------------
Confidence            34678888999999998742  5555 544432   335665555          22221                    


Q ss_pred             chHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          409 EPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                           +.|.+.|+++++|+++++ .+|+.+..
T Consensus        75 -----~~l~~~~~V~~~Pt~~~~-~~G~~v~~  100 (119)
T d2es7a1          75 -----EAIGDRFNVRRFPATLVF-TDGKLRGA  100 (119)
T ss_dssp             -----HHHHHTTTCCSSSEEEEE-SCC----C
T ss_pred             -----HHHHHhcCcCcceEEEEE-EcCeEEEE
Confidence                 346677999999999999 58887653

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=94.78  E-value=0.023  Score=47.01  Aligned_cols=66  Identities=14%  Similarity=0.089  Sum_probs=45.5

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|+++|.+.||++|..  +.+. +.++.+    +++.++=|-+        |.                         
T Consensus        17 ~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~----~~~~~~~vd~--------~~-------------------------   59 (105)
T d1nw2a_          17 DKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA----DKVTVAKLNV--------DE-------------------------   59 (105)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHHT----TTCEEEEEET--------TT-------------------------
T ss_pred             CCcEEEEEECCCCCCcccccchhhhhhhhcC----CceEEEEEEC--------CC-------------------------
Confidence            688999999999988854  5666 666654    3355544422        11                         


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                        -+.+.+.|++++.|+++++. +|+.+.
T Consensus        60 --~~~~~~~~~V~~~Pt~~~~~-~G~~~~   85 (105)
T d1nw2a_          60 --NPETTSQFGIMSIPTLILFK-GGEPVK   85 (105)
T ss_dssp             --CHHHHHHTTCCBSSEEEEEE-TTEEEE
T ss_pred             --CcccHHHCCcceeeEEEEEE-CCEEEE
Confidence              12334678999999999995 788763

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.60  E-value=0.033  Score=46.07  Aligned_cols=68  Identities=4%  Similarity=-0.116  Sum_probs=43.9

Q ss_pred             eecCcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          331 VLRRKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       331 ~L~gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .|.|.+..+.|++.||++|..  +. +++++.+. ..+.+++-|-.        |+.                       
T Consensus        12 ~l~~~~~i~~F~s~~C~~C~~--~~p~~~~~a~~-~~~i~~~~vd~--------~~~-----------------------   57 (96)
T d1hyua4          12 DIDGDFEFETYYSLSCHNCPD--VVQALNLMAVL-NPRIKHTAIDG--------GTF-----------------------   57 (96)
T ss_dssp             HCCSCEEEEEEECTTCSSHHH--HHHHHHHHHHH-CTTEEEEEEET--------TTC-----------------------
T ss_pred             hcCCCeEEEEEECCCCcchHH--HHHHHHHHHHh-CCceEEEEEec--------ccc-----------------------
Confidence            566888899999999999843  33 44554432 34566665532        221                       


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          +.+.+.|++++.|++++   +|+.+.
T Consensus        58 ----~~l~~~~~I~~vPt~~~---ng~~~~   80 (96)
T d1hyua4          58 ----QNEITERNVMGVPAVFV---NGKEFG   80 (96)
T ss_dssp             ----HHHHHHTTCCSSSEEEE---TTEEEE
T ss_pred             ----hHHHhhcccccccEEEE---CCEEEE
Confidence                12345689999999866   777653

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.037  Score=46.63  Aligned_cols=65  Identities=2%  Similarity=-0.094  Sum_probs=44.0

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|.++|++.||++|.-  +.|. +.++.     .+..++-|.+        |+.                        
T Consensus        21 ~klvvv~F~a~wC~~Ck~~~p~~~~la~~~-----~~~~f~~vd~--------d~~------------------------   63 (107)
T d1gh2a_          21 SRLAVVKFTMRGCGPCLRIAPAFSSMSNKY-----PQAVFLEVDV--------HQC------------------------   63 (107)
T ss_dssp             TSCEEEEEECSSCHHHHHHHHHHHHHHHHC-----TTSEEEEEET--------TTS------------------------
T ss_pred             CCEEEEEEECCCCCCccccchhhhcccccc-----cccccccccc--------ccc------------------------
Confidence            678999999999998853  5566 55443     2344444432        221                        


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                         ..|.+.|++++.|+++++ -+|+.+.
T Consensus        64 ---~~l~~~~~v~~~Pt~~~~-~~G~~v~   88 (107)
T d1gh2a_          64 ---QGTAATNNISATPTFQFF-RNKVRID   88 (107)
T ss_dssp             ---HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ---hhhhhhcCceeceEEEEE-ECCEEEE
Confidence               124567999999999999 6888764

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=94.48  E-value=0.039  Score=46.73  Aligned_cols=69  Identities=12%  Similarity=0.098  Sum_probs=44.0

Q ss_pred             CcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHH
Q 044391          334 RKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAV  412 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~  412 (691)
                      +|.|+++|.+.||++|..  +. +++++.++. .+.  +|+-+ |-     |.+                          
T Consensus        25 ~k~vvv~f~a~wC~~C~~--~~p~~~~l~~~~-~~v--~~~~v-d~-----~~~--------------------------   67 (112)
T d1f9ma_          25 DKPVVLDMFTQWCGPCKA--MAPKYEKLAEEY-LDV--IFLKL-DC-----NQE--------------------------   67 (112)
T ss_dssp             TSCEEEEEECTTCHHHHH--HHHHHHHHHHHC-TTS--EEEEE-EC-----SST--------------------------
T ss_pred             CCEEEEEEEcCCCcchHH--HHHHHhhhcccc-ccc--eeecc-cc-----ccc--------------------------
Confidence            478999999999999843  23 444443321 233  44443 10     110                          


Q ss_pred             HHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391          413 VKYAKEVWKFSKKAILVPVDPQGRILNQ  440 (691)
Q Consensus       413 ~r~ike~f~~~~iP~LVvL~pqGkv~~~  440 (691)
                      -+.|.+.|++++.|+++++ .+|+.+..
T Consensus        68 ~~~l~~~~~V~~~Pt~~~~-k~G~~v~~   94 (112)
T d1f9ma_          68 NKTLAKELGIRVVPTFKIL-KENSVVGE   94 (112)
T ss_dssp             THHHHHHHCCSSSSEEEEE-ETTEEEEE
T ss_pred             chhhHhheeeccCCEEEEE-ECCEEEEE
Confidence            1235567999999999999 58998753

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.031  Score=50.01  Aligned_cols=70  Identities=14%  Similarity=0.248  Sum_probs=43.1

Q ss_pred             ecCcEEEEEEecCCCChhhhH---HHH---HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCC
Q 044391          332 LRRKHVLLLISSLDLSDEEIL---VLH---LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHP  405 (691)
Q Consensus       332 L~gK~VlL~fSal~~~~~e~~---~L~---iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~  405 (691)
                      -++|.|+++|.+.||++|...   ++.   +-+-+++    +|  |++.+ |-    ++++                   
T Consensus        40 ~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~----~f--V~~~v-~~----~~~e-------------------   89 (147)
T d2dlxa1          40 MQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE----HF--IFWQV-YH----DSEE-------------------   89 (147)
T ss_dssp             HHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH----TE--EEEEE-ES----SSHH-------------------
T ss_pred             HcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh----he--eEeee-cc----cchh-------------------
Confidence            348999999999999887432   222   3333332    35  33332 21    1111                   


Q ss_pred             CCCchHHHHHHHHhhCcCCceEEEEeCCC-Ccee
Q 044391          406 TIIEPAVVKYAKEVWKFSKKAILVPVDPQ-GRIL  438 (691)
Q Consensus       406 d~i~~~~~r~ike~f~~~~iP~LVvL~pq-Gkv~  438 (691)
                            + +.+.+.+++.+.|+++++||. |+.+
T Consensus        90 ------~-~~~~~~y~v~~~Pti~~idp~~ge~v  116 (147)
T d2dlxa1          90 ------G-QRYIQFYKLGDFPYVSILDPRTGQKL  116 (147)
T ss_dssp             ------H-HHHHHHHTCCSSSEEEEECTTTCCCC
T ss_pred             ------h-hhhhhheecCceeEEEEEeCCCCeEe
Confidence                  1 233456899999999999995 6654

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.27  E-value=0.035  Score=49.86  Aligned_cols=42  Identities=14%  Similarity=0.191  Sum_probs=32.8

Q ss_pred             cceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEec
Q 044391          329 IEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPI  375 (691)
Q Consensus       329 Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpi  375 (691)
                      +..++||.++|-|.+.||++|  +.+.|. +|++-     .+.+++.|..
T Consensus        49 l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~-----~~~~~~~i~~   93 (166)
T d1z6na1          49 LQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQ-----PNIELAIISK   93 (166)
T ss_dssp             HHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHC-----TTEEEEEECH
T ss_pred             HHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHC-----CCCcEEEEEC
Confidence            456779999999999999887  568899 88863     3577777754

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.00  E-value=0.027  Score=44.75  Aligned_cols=27  Identities=19%  Similarity=0.043  Sum_probs=19.4

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHh
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREH  360 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~l  360 (691)
                      +|...++|++.||++|..  +.+. +.++.
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~   31 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEM   31 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHC
T ss_pred             CceEEEEEECCCCcChHhhhhhcccccccc
Confidence            477889999999988743  4555 55543

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.13  Score=49.11  Aligned_cols=108  Identities=11%  Similarity=0.061  Sum_probs=66.6

Q ss_pred             cCCCCceeecceecC-cEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH--
Q 044391          320 DGSSRTRVNIEVLRR-KHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ--  392 (691)
Q Consensus       320 ~g~~~~kV~Is~L~g-K~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~--  392 (691)
                      ....| +|.+++++| |.|.|||= +.+||.|  |+.-+. .|++.++   .+.+|+-||. |+     -.....|.+  
T Consensus        13 ~~~~G-~v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~---~g~~v~giS~-Ds-----~~sh~~~~~~~   82 (220)
T d1prxa_          13 NTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAK---RNVKLIALSI-DS-----VEDHLAWSKDI   82 (220)
T ss_dssp             EETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHT---TTEEEEEEES-SC-----HHHHHHHHHHH
T ss_pred             ecCCC-CEEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhc---ccceeecccc-cc-----ccchhhhhhhh
Confidence            34445 599999998 77777775 4456545  666788 9999984   4699999996 42     334444433  


Q ss_pred             --HhcCCCeeeecCCCCCchHHHHHHHHhhCcC------------CceEEEEeCCCCceec
Q 044391          393 --LQAMMPWYTVQHPTIIEPAVVKYAKEVWKFS------------KKAILVPVDPQGRILN  439 (691)
Q Consensus       393 --~~~~MPWyAVp~~d~i~~~~~r~ike~f~~~------------~iP~LVvL~pqGkv~~  439 (691)
                        ......=..++||=.-|.  -+.+.+.|++-            ..+...||||+|++..
T Consensus        83 ~~~~~~~~~~~l~fpllsD~--~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~  141 (220)
T d1prxa_          83 NAYNSEEPTEKLPFPIIDDR--NRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKL  141 (220)
T ss_dssp             HHHTTSCCCSCCSSCEEECT--TCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEE
T ss_pred             hhccccccccCcccccccCc--ccHHHHHhCCccccccccccceeeeEEEEEEcCccceeE
Confidence              222111123444422121  23445556653            3588999999999853

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=93.98  E-value=0.027  Score=49.77  Aligned_cols=67  Identities=12%  Similarity=0.128  Sum_probs=45.4

Q ss_pred             CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|+|.|.+.|||+|.  .++|. +-++.   ++..|.+.-|   |       .|.                       
T Consensus        36 ~~vVll~f~a~wCp~C~~~~pvl~ela~~~---~~~~~~~a~V---d-------~d~-----------------------   79 (132)
T d2hfda1          36 DGVVLLSSDPKRTPEVSDNPVMIGELLREF---PDYTWQVAIA---D-------LEQ-----------------------   79 (132)
T ss_dssp             EEEEEECSCCSCCSSSSCCTHHHHHHHTTC---TTSCEEEEEE---C-------HHH-----------------------
T ss_pred             CcEEEEEeeCCCChhHHHHHHHHHHHHHHc---cCCcceeEEE---E-------ecC-----------------------
Confidence            46788899999999874  35555 43332   2444555554   2       222                       


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                        -+.|.+.|+++++|+++++ .+|+.+.
T Consensus        80 --~~~la~~~~V~~~PT~~~~-~~G~~v~  105 (132)
T d2hfda1          80 --SEAIGDRFGVFRFPATLVF-TGGNYRG  105 (132)
T ss_dssp             --HHHHHHHHTCCSCCEEEEE-ETTEEEE
T ss_pred             --CHHHHHhhccCcceeEEEE-EcCcEee
Confidence              1456777999999999999 7888763

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.014  Score=49.41  Aligned_cols=68  Identities=10%  Similarity=-0.045  Sum_probs=44.4

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .+|.|+++|-+.||++|..  +.+. +.++++.   .+..|+++-+ |       .++                ++    
T Consensus        23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~---~~~~v~~~~v-d-------~~~----------------~~----   71 (120)
T d1meka_          23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKA---EGSEIRLAKV-D-------ATE----------------ES----   71 (120)
T ss_dssp             HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTT---TCCCCBCEEE-E-------TTT----------------CC----
T ss_pred             cCCcEEEEEECCCcCCccccchhhhhhcccccc---cccceeeecc-c-------ccc----------------ch----
Confidence            3799999999999988753  4566 6666653   2344555544 2       211                12    


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRI  437 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv  437 (691)
                           .|.+.|++++.|+++++ ++|+.
T Consensus        72 -----~l~~~~~i~~~Pt~~~~-~~G~~   93 (120)
T d1meka_          72 -----DLAQQYGVRGYPTIKFF-RNGDT   93 (120)
T ss_dssp             -----SSHHHHTCCSSSEEEEE-ESSCS
T ss_pred             -----hHHHHhCCccCCeEEEE-ECCeE
Confidence                 23456899999999988 45544

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=93.01  E-value=0.065  Score=46.70  Aligned_cols=55  Identities=15%  Similarity=0.257  Sum_probs=43.3

Q ss_pred             hhhhhhcCCcEEEEEccCChhHH---HHHHHHHHHHHHHh--CCceeeEEecccChHHHHhhhh
Q 044391          482 TILEWMKEERYICLYGGGDIEWI---RRFTTSAKAVARAA--QINLGMAYVGKNNAKERFRKIS  540 (691)
Q Consensus       482 ~I~~~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a--~~~~E~v~Vgkdn~~e~v~~~~  540 (691)
                      .+++.  .||+|.|||.+  .||   +++.+.+.++.++.  +..|+++.|+.|+..+..++..
T Consensus        22 ~l~~~--~GK~vvl~Fwa--twC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~   81 (144)
T d1o73a_          22 SLGSL--VGKTVFLYFSA--SWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYY   81 (144)
T ss_dssp             CSGGG--TTCEEEEEEEC--TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHH
T ss_pred             eHHHh--CCCEEEEEeCh--hhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHH
Confidence            34455  89999999999  666   99999999986653  5689999999997766665533

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.79  E-value=0.05  Score=48.25  Aligned_cols=66  Identities=11%  Similarity=-0.002  Sum_probs=46.7

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP  410 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~  410 (691)
                      +|.|++.|++.||++|.-  ++|. +-++++    +.+.++-|-+        |+.                  +     
T Consensus        22 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~----~~v~~~~VDv--------d~~------------------~-----   66 (137)
T d1qgva_          22 DRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK----NFAVIYLVDI--------TEV------------------P-----   66 (137)
T ss_dssp             SSEEEEEEECTTSHHHHHHHHHHHHHHHHHT----TTEEEEEEET--------TTC------------------C-----
T ss_pred             CCEEEEEEECCCCccchhcChHHHHHHHHhh----ccceEEEeec--------ccc------------------c-----
Confidence            689999999999998853  6677 766664    3356655532        211                  1     


Q ss_pred             HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          411 AVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                          -|.+.|++++.|+++++ .+|+.+.
T Consensus        67 ----~la~~~~I~~~PT~~~f-~~g~~i~   90 (137)
T d1qgva_          67 ----DFNKMYELYDPCTVMFF-FRNKHIM   90 (137)
T ss_dssp             ----TTTTSSCSCSSCEEEEE-ETTEEEE
T ss_pred             ----hhhhhcCeeeEEEEEEE-eCCcEEE
Confidence                13456999999999999 6887664

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.56  E-value=0.055  Score=43.35  Aligned_cols=59  Identities=10%  Similarity=-0.035  Sum_probs=37.3

Q ss_pred             EEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHHHH
Q 044391          338 LLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVK  414 (691)
Q Consensus       338 lL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~~r  414 (691)
                      ...|++.||++|..  +.+. +-++.    +++++++-|-+        |+++                           
T Consensus         5 v~~F~a~wC~~C~~~~p~~~~l~~~~----~~~v~~~~vd~--------d~~~---------------------------   45 (85)
T d1nhoa_           5 IEVFTSPTCPYCPMAIEVVDEAKKEF----GDKIDVEKIDI--------MVDR---------------------------   45 (85)
T ss_dssp             EEEESCSSSCCSTTHHHHHHHHHHHH----CSSCCEEEECT--------TTCG---------------------------
T ss_pred             EEEEECCCCcchHHHHHHHhhhcccc----ccccccccccc--------ccch---------------------------
Confidence            34599999988743  5565 55554    34577777643        2111                           


Q ss_pred             HHHHhhCcCCceEEEEeCCCCc
Q 044391          415 YAKEVWKFSKKAILVPVDPQGR  436 (691)
Q Consensus       415 ~ike~f~~~~iP~LVvL~pqGk  436 (691)
                      .+.+.|++++.|++++ +.+|+
T Consensus        46 ~l~~~~~V~~~Pt~~~-~~~~~   66 (85)
T d1nhoa_          46 EKAIEYGLMAVPAIAI-NGVVR   66 (85)
T ss_dssp             GGGGGTCSSCSSEEEE-TTTEE
T ss_pred             hhHHhcCceEeCEEEE-CCcEE
Confidence            1345689999999865 54444

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.25  E-value=0.26  Score=41.39  Aligned_cols=68  Identities=7%  Similarity=-0.160  Sum_probs=44.9

Q ss_pred             cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391          333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE  409 (691)
Q Consensus       333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~  409 (691)
                      .+|.|+++|.+.||++|.-  +.+. +-++++   +.+..|+-|-+        |.                        
T Consensus        26 ~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~---~~~v~~~~vd~--------~~------------------------   70 (119)
T d2b5ea4          26 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLV---EKNITLAQIDC--------TE------------------------   70 (119)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTT---TTTCEEEEEET--------TT------------------------
T ss_pred             cCCeEEEEEECCccCcccccchhhhhhhhhhc---ccceeeeeeec--------cc------------------------
Confidence            3689999999999988743  4455 555543   23444444421        10                        


Q ss_pred             hHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          410 PAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                         -+.|.++|++++.|+++++ ++|+...
T Consensus        71 ---~~~l~~~~~v~~~Pti~~f-~~g~~~~   96 (119)
T d2b5ea4          71 ---NQDLCMEHNIPGFPSLKIF-KNSDVNN   96 (119)
T ss_dssp             ---CHHHHHHTTCCSSSEEEEE-ETTCTTC
T ss_pred             ---hHHHHHHhccccCCeEEEE-ECCEEee
Confidence               1245677899999999999 6776543

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=89.99  E-value=0.61  Score=44.30  Aligned_cols=98  Identities=10%  Similarity=0.087  Sum_probs=65.0

Q ss_pred             eeecce-ecCcEEEEEEecCC-CChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh------
Q 044391          326 RVNIEV-LRRKHVLLLISSLD-LSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ------  394 (691)
Q Consensus       326 kV~Is~-L~gK~VlL~fSal~-~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~------  394 (691)
                      ++.+++ ++||.|.|||=-.+ +|.|  |+.-+. .|++.++   .+.+|+=||. |+     -.....|-+-.      
T Consensus        21 ~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~---~~~~vigiS~-Ds-----~~sh~~w~~~~~~~~~~   91 (219)
T d1xcca_          21 DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLK---LNCKLIGFSC-NS-----KESHDKWIEDIKYYGKL   91 (219)
T ss_dssp             CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHT---TTEEEEEEES-SC-----HHHHHHHHHHHHHHHTC
T ss_pred             cEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcc---cceEEEeecC-cc-----HhHHhHHhhhhHhhccc
Confidence            588888 58999999887555 4445  556688 9999984   4699999995 52     45556664432      


Q ss_pred             cCCCeeeecCCCCCchHHHHHHHHhhCcC------------CceEEEEeCCCCceec
Q 044391          395 AMMPWYTVQHPTIIEPAVVKYAKEVWKFS------------KKAILVPVDPQGRILN  439 (691)
Q Consensus       395 ~~MPWyAVp~~d~i~~~~~r~ike~f~~~------------~iP~LVvL~pqGkv~~  439 (691)
                      ...|+.-+--++       +.+.+.|++-            ......||||+|++..
T Consensus        92 ~~l~fpllsD~~-------~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~  141 (219)
T d1xcca_          92 NKWEIPIVCDES-------RELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKA  141 (219)
T ss_dssp             SCCCCCEEECTT-------SHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEE
T ss_pred             CCCCcccccccc-------cHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEE
Confidence            245554444433       2344446762            1248889999999853

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=89.75  E-value=0.27  Score=41.98  Aligned_cols=52  Identities=13%  Similarity=0.291  Sum_probs=40.6

Q ss_pred             hhhhhcCCcEEEEEccCChhHH---HHHHHHHHHHHHHh--CCceeeEEecccChHHHHhh
Q 044391          483 ILEWMKEERYICLYGGGDIEWI---RRFTTSAKAVARAA--QINLGMAYVGKNNAKERFRK  538 (691)
Q Consensus       483 I~~~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a--~~~~E~v~Vgkdn~~e~v~~  538 (691)
                      +++.  .||.+.|||.+  .||   +.+.+.+.++++..  +..+++++|+.++..+.++.
T Consensus        21 l~~l--~GK~vll~Fwa--~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~   77 (144)
T d1o8xa_          21 VKSL--AGKLVFFYFSA--SWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAG   77 (144)
T ss_dssp             GGGG--TTCEEEEEEEC--TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHH
T ss_pred             HHHh--CCCEEEEEecc--ccccccccccchhHHhhhhcccccccccccccccccHHHHHH
Confidence            3444  89999999999  666   88888888887663  45799999999877665544

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.60  E-value=4.3  Score=35.76  Aligned_cols=108  Identities=7%  Similarity=-0.079  Sum_probs=60.2

Q ss_pred             CceecCCCCceeecceecCcEEEEEEecCCCChhhh--HHHHHHHHhhccCCCCeeEEEEecccCCCCC---------Ch
Q 044391          316 QPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDEEI--LVLHLYREHKAREEFDYAIVWLPIVDRSIAW---------DE  384 (691)
Q Consensus       316 ~~l~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~iY~~lk~~~~~~fEIVwIpiVd~s~~W---------~D  384 (691)
                      .++..|+.+         .|+++..||+..||.|.-  ..+.  + +..  .....|+|+|+- -..++         -.
T Consensus        27 ~~i~~G~~~---------a~~tv~vF~D~~CP~C~~~~~~l~--~-l~~--~~~v~v~~~~~~-~~~~~s~~~a~a~~~a   91 (169)
T d1v58a1          27 HWLLDGKKD---------APVIVYVFADPFCPYCKQFWQQAR--P-WVD--SGKVQLRTLLVG-VIKPESPATAAAILAS   91 (169)
T ss_dssp             CCEEESCTT---------CSEEEEEEECTTCHHHHHHHHHHH--H-HHH--TTSEEEEEEECC-CSSTTHHHHHHHHHHS
T ss_pred             CCceeCCCC---------CCEEEEEEECCCCcchHHHHHHHH--H-HHh--ccceeEEEEecc-cCCcchHHHHHHHHhh
Confidence            566667766         567888999999988843  2333  1 112  235889999871 00011         11


Q ss_pred             hhHHHHHH-HhcCCCeeeecCCCCCchHHHHHH------HHhhCcCCceEEEEeCCCCcee
Q 044391          385 GYRQKFEQ-LQAMMPWYTVQHPTIIEPAVVKYA------KEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       385 ~d~~~F~~-~~~~MPWyAVp~~d~i~~~~~r~i------ke~f~~~~iP~LVvL~pqGkv~  438 (691)
                      .++.+|.. +....-.-....+...+....+.|      -+.++++|-|++|+.|++|+..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~  152 (169)
T d1v58a1          92 KDPAKTWQQYEASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQ  152 (169)
T ss_dssp             SSHHHHHHHHHHTTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEE
T ss_pred             hCHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEE
Confidence            12223322 221111111112222334444433      4689999999999999999774

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.52  E-value=1.3  Score=36.40  Aligned_cols=36  Identities=8%  Similarity=-0.036  Sum_probs=22.8

Q ss_pred             CcEEEEEEecCCCChhhhHHHHHHHHhhccCCCCeeEEEEe
Q 044391          334 RKHVLLLISSLDLSDEEILVLHLYREHKAREEFDYAIVWLP  374 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~~~L~iY~~lk~~~~~~fEIVwIp  374 (691)
                      .-.++.+||+.||++|+-.. .+.+++    ..+|+..+|-
T Consensus        15 ~~p~i~lft~~~C~~C~~a~-~~L~~~----~~~~~~~~v~   50 (100)
T d1wjka_          15 ALPVLTLFTKAPCPLCDEAK-EVLQPY----KDRFILQEVD   50 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHH-HHTSTT----SSSSEEEEEE
T ss_pred             CCCEEEEEECCCCCChHHHH-HHHHHh----hhhcceEEEe
Confidence            34578889999999886421 022333    4557777774

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.18  E-value=1.1  Score=39.60  Aligned_cols=57  Identities=19%  Similarity=0.156  Sum_probs=37.5

Q ss_pred             eecCCCCceeeccee-cCcEEEEEEecCC-CChh---hhHHHH-HHHHhhccCCCCeeEEEEeccc
Q 044391          318 VVDGSSRTRVNIEVL-RRKHVLLLISSLD-LSDE---EILVLH-LYREHKAREEFDYAIVWLPIVD  377 (691)
Q Consensus       318 l~~g~~~~kV~Is~L-~gK~VlL~fSal~-~~~~---e~~~L~-iY~~lk~~~~~~fEIVwIpiVd  377 (691)
                      |++..++++|.++++ +||.|.|||=-.+ .|.|   ...... -|++++++   ..+.|++..+|
T Consensus        14 l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~---g~~~i~~~s~~   76 (161)
T d1hd2a_          14 VFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAK---GVQVVACLSVN   76 (161)
T ss_dssp             EECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTT---TCCEEEEEESS
T ss_pred             EEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHc---CCeEEEEEecC
Confidence            445666788999885 8999999998665 3334   334456 77777743   45555544444

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=85.14  E-value=0.8  Score=38.52  Aligned_cols=89  Identities=12%  Similarity=0.119  Sum_probs=53.7

Q ss_pred             CCceecCCCCceeecce-------ecCcEEEEEEecCCCChhhh----HHHH-HHHHhhccCCCCeeEEEEecccCCCCC
Q 044391          315 IQPVVDGSSRTRVNIEV-------LRRKHVLLLISSLDLSDEEI----LVLH-LYREHKAREEFDYAIVWLPIVDRSIAW  382 (691)
Q Consensus       315 ~~~l~~g~~~~kV~Is~-------L~gK~VlL~fSal~~~~~e~----~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W  382 (691)
                      ..|.|+|.+.. +.+.+       -+.+.|+++|-+.||..+..    ..+. +|+++.... .+-.|.+.-| |.    
T Consensus         3 ~~p~~d~~~~V-~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~-~~~~v~~a~V-d~----   75 (124)
T d1a8ya1           3 DFPEYDGVDRV-INVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVL-EDKGVGFGLV-DS----   75 (124)
T ss_dssp             CCCCCCCCCCC-EECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEE-ET----
T ss_pred             CCCccCCCCcc-EECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHh-ccCCeEEEEE-Ee----
Confidence            35777877653 33321       23578999999999975432    2355 666653321 1223666554 31    


Q ss_pred             ChhhHHHHHHHhcCCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391          383 DEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILN  439 (691)
Q Consensus       383 ~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  439 (691)
                       ++                           -+.|.++|++++.|++.++. +|+++.
T Consensus        76 -~~---------------------------~~~l~~~~~I~~yPTi~~f~-~g~~~~  103 (124)
T d1a8ya1          76 -EK---------------------------DAAVAKKLGLTEEDSIYVFK-EDEVIE  103 (124)
T ss_dssp             -TT---------------------------SHHHHHTTTCCSTTCEEEEE-SSSEEE
T ss_pred             -ec---------------------------ccchhhccccccCCcEEEec-cCccEE
Confidence             11                           12356779999999998885 566653

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.65  E-value=0.36  Score=41.51  Aligned_cols=28  Identities=18%  Similarity=0.042  Sum_probs=20.7

Q ss_pred             CcEEEEEEecCCCChhhh--HHHH-HHHHhh
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLH-LYREHK  361 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk  361 (691)
                      +|.|+++|-+.||++|.-  +.+. +-++.+
T Consensus        30 ~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~   60 (140)
T d2b5ea1          30 KKDVLVLYYAPWCGHCKRLAPTYQELADTYA   60 (140)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEeccCcccchhHHHHHHHHHHHh
Confidence            789999999999988742  4555 555544

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=84.02  E-value=0.97  Score=37.48  Aligned_cols=46  Identities=11%  Similarity=0.302  Sum_probs=34.0

Q ss_pred             hhhhhcCCcEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeeEEeccc
Q 044391          483 ILEWMKEERYICLYGGGDI-EWIRRFTTSAKAVARAAQINLGMAYVGKN  530 (691)
Q Consensus       483 I~~~i~egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkd  530 (691)
                      +.+.+..++++.+|||+++ ..||.|.+.+.++++..+..+  ++|.-+
T Consensus        19 ~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v--~~v~~~   65 (115)
T d1zmaa1          19 AQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHI--YFINSE   65 (115)
T ss_dssp             HHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCC--EEEETT
T ss_pred             HHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhh--hhheee
Confidence            3455779999999999944 445999999999977766554  455443

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.13  E-value=4.3  Score=35.26  Aligned_cols=95  Identities=14%  Similarity=0.159  Sum_probs=51.5

Q ss_pred             CcEEEEEEecCCCChhhh--HHHHHHHHhhccCCCCeeEEEE--ecccCCC--------CC-ChhhHHHHHHHhcCCCee
Q 044391          334 RKHVLLLISSLDLSDEEI--LVLHLYREHKAREEFDYAIVWL--PIVDRSI--------AW-DEGYRQKFEQLQAMMPWY  400 (691)
Q Consensus       334 gK~VlL~fSal~~~~~e~--~~L~iY~~lk~~~~~~fEIVwI--piVd~s~--------~W-~D~d~~~F~~~~~~MPWy  400 (691)
                      +|++...||+..||-|.-  +.|.   ++.+   .+..++|+  |+...+.        -| .......+++++....=-
T Consensus        26 ak~tIv~FsD~~CpyC~~~~~~l~---~~~~---~~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   99 (156)
T d1eeja1          26 EKHVITVFTDITCGYCHKLHEQMA---DYNA---LGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVA   99 (156)
T ss_dssp             CCEEEEEEECTTCHHHHHHHTTHH---HHHH---TTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCC
T ss_pred             CCEEEEEEeCCCCHHHHHHHHHHH---Hhhc---cCceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccc
Confidence            688999999999988742  2333   3322   23455555  4321100        00 112234455555433211


Q ss_pred             eecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391          401 TVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRIL  438 (691)
Q Consensus       401 AVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~  438 (691)
                      .-....  ..+.-..+.+.++++|-|++++  ++|+++
T Consensus       100 ~~~~~~--~i~~~~~la~~lgv~GTPt~~~--~nG~~v  133 (156)
T d1eeja1         100 PASCDV--DIADHYALGVQLGVSGTPAVVL--SNGTLV  133 (156)
T ss_dssp             CCCCSC--CHHHHHHHHHHHTCCSSSEEEC--TTSCEE
T ss_pred             hhhhcc--hHHHHHHHHHHcCCcCCCEEEE--eCCeEe
Confidence            112222  2344556779999999999876  458776

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=81.09  E-value=1.2  Score=36.95  Aligned_cols=51  Identities=6%  Similarity=-0.085  Sum_probs=38.9

Q ss_pred             hhhhhcCCcEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeeEEecccChH
Q 044391          483 ILEWMKEERYICLYGGGDI-EWIRRFTTSAKAVARAAQINLGMAYVGKNNAK  533 (691)
Q Consensus       483 I~~~i~egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkdn~~  533 (691)
                      +..-.+.+|.++++|++++ .+|+.+.+.+.++++..+..+.++.|--+...
T Consensus        17 l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~   68 (112)
T d1ep7a_          17 LAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVA   68 (112)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTH
T ss_pred             HHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccccc
Confidence            3333457899999999955 55599999999998886666888888776443