Citrus Sinensis ID: 044404

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70------
Protein Sequence
MSSHGHGSTLPKFGEWDVNDPATADGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNHHKQYSAKKKWFCCVFS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccEEEEccHHHHcccccccccccccccccccccccccccccccEEEEEEEc
Coil and Loop (DISEMBL)
msshghgstlpkfgewdvndpatadgfSFVFIKAseekrggsaaagnvtsrskyktetnhhkqysakkkwfccvfs
Flexible Loop (DISEMBL)
msshghgstlpkfgewdvnDPATADGFSFVFIKASeekrggsaaagnvtsrskyktetnhhkqysakkkwFCCVFS
Low Complexity Region (SEG)
MSSHGHGSTLPKFGEWDVNDPATADGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNHHKQYSAKKKWFCCVFS
Disordered region (IsUnstruct)
*************GEWDVNDPATADGFSFVFIK********************************AKKKWFCCVF*
Disordered Region (DISOPRED)
******G***PKFGEWDVNDPATADGFSFVFIK************************************WFCCVFS
Disordered Region (DISEMBL)
*********LPKFGEWDVNDPATADGFSFVFIKASE****************************SAKKKWFCCVFS
Disordered Region (DISPRO)
************FGEWDVNDPATADGFSFVFIKASE*****************************AKKKWFCCVFS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSHGHGSTLPKFGEWDVNDPATADGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNHHKQYSAKKKWFCCVFS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	76	2.2.26 [Sep-21-2011]
Q8GYN5	211	RPM1-interacting protein	no	no	0.802	0.289	0.352	4e-06

>sp|Q8GYN5|RIN4_ARATH RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 7/68 (10%)

Query: 8   STLPKFGEWDVNDPATADGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNHHKQYSAK 67
           + +PKFG+WD N+P++ADG++ +F K  EE+  G+    NV+  S+  T   H    +  
Sbjct: 146 TVVPKFGDWDENNPSSADGYTHIFNKVREERSSGA----NVSGSSRTPT---HQSSRNPN 198

Query: 68  KKWFCCVF 75
               CC F
Sbjct: 199 NTSSCCCF 206

Essential regulator of plant defense, which plays a central role in resistance in case of infection by a pathogen. It is a common target for both type III avirulence proteins from P.syringae (AvrB, AvrRpm1 and AvrRpt2) and for the plant Resistance (R) proteins RPM1 and RPS2. In strains carrying the appropriate R gene for avirulence proteins of the pathogen, its association with avirulence proteins triggers a defense system including the hypersensitive response, which limits the spread of disease. In contrast, in plants lacking appropriate R genes, its association with avirulence proteins of the pathogen impairs the defense system and leads to the pathogen multiplication.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
225456785	74	PREDICTED: RPM1-interacting protein 4 [V	0.907	0.932	0.519	2e-13
356513854	72	PREDICTED: uncharacterized protein LOC10	0.934	0.986	0.493	6e-13
413938669	172	hypothetical protein ZEAMMB73_896291 [Ze	0.947	0.418	0.487	6e-13
242095538	80	hypothetical protein SORBIDRAFT_10g01069	0.855	0.812	0.549	7e-13
255631242	72	unknown [Glycine max]	0.934	0.986	0.479	2e-12
125554952	103	hypothetical protein OsI_22578 [Oryza sa	0.881	0.650	0.534	2e-12
226506802	80	LOC100280613 [Zea mays] gi|195606382|gb|	0.855	0.812	0.535	2e-12
55296571	80	putative nitrate-induced NOI protein [Or	0.934	0.887	0.519	2e-12
256258956	80	NIP [Oryza minuta] gi|256258965|gb|ACU64	0.934	0.887	0.519	2e-12
162459794	80	LOC541680 [Zea mays] gi|2642213|gb|AAB86	0.855	0.812	0.535	2e-12

>gi|225456785|ref|XP_002277247.1| PREDICTED: RPM1-interacting protein 4 [Vitis vinifera] gi|297733635|emb|CBI14882.3| unnamed protein product [Vitis vinifera]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 8/77 (10%)

Query: 1  MSSHGHGSTLPKFGEWDVNDPATADGFSFVFIKASEEKRGGSAAAGNVTSRSK----YKT 56
          M+S   G  LPKFGEWDVN+PA+A+GF+ +F KA +EK+  + AAGNV S  +    YK 
Sbjct: 1  MASQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKK--TNAAGNVASPRRNGNGYKQ 58

Query: 57 ETNHHKQYSAKKKWFCC 73
            ++H  YS K+KWFCC
Sbjct: 59 NEDYH--YSPKRKWFCC 73

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513854|ref|XP_003525623.1| PREDICTED: uncharacterized protein LOC100526954 [Glycine max]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 2/73 (2%)

Query: 1  MSSHGHGSTLPKFGEWDVNDPATADGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNH 60
          M+S  +G  LPKFGEWDVN+PA+A+GF+ +F KA +EK+  +A      S   +K E  +
Sbjct: 1  MASQENGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTNTATP--RRSDPVFKNENYN 58

Query: 61 HKQYSAKKKWFCC 73
            QYS K+KWFCC
Sbjct: 59 TPQYSGKRKWFCC 71

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413938669|gb|AFW73220.1| hypothetical protein ZEAMMB73_896291 [Zea mays]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 8/80 (10%)

Query: 3   SHGHGSTLPKFGEWDVNDPATADGFSFVFIKASEEK--------RGGSAAAGNVTSRSKY 54
           S   G T+PKFGEWDVN+PA+ADGF+ +F KA +EK        R  SA+A +  SRS+ 
Sbjct: 86  SDDTGRTIPKFGEWDVNNPASADGFTVIFSKARDEKKAPAQGHIRDRSASADSKDSRSRD 145

Query: 55  KTETNHHKQYSAKKKWFCCV 74
           +  T++  + +A KKWFCCV
Sbjct: 146 EKMTSYSSRTNASKKWFCCV 165

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242095538|ref|XP_002438259.1| hypothetical protein SORBIDRAFT_10g010690 [Sorghum bicolor] gi|241916482|gb|EER89626.1| hypothetical protein SORBIDRAFT_10g010690 [Sorghum bicolor]

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 6/71 (8%)

Query: 7  GSTLPKFGEWDVNDPATADGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNHHKQYSA 66
          G  LPKFGEWDVNDPA+ADGF+ +F KA +EK+GG+   G  T      T T   + Y+A
Sbjct: 6  GRPLPKFGEWDVNDPASADGFTVIFNKARDEKKGGN---GQDTDSPSKDTRTERVESYAA 62

Query: 67 K---KKWFCCV 74
          K   KKWFCCV
Sbjct: 63 KPSTKKWFCCV 73

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255631242|gb|ACU15988.1| unknown [Glycine max]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 2/73 (2%)

Query: 1  MSSHGHGSTLPKFGEWDVNDPATADGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNH 60
          M+S  +G  LPKFGEWDVN+PA+A+GF+ +F KA +E++  +A      S   +K E  +
Sbjct: 1  MASQENGRPLPKFGEWDVNNPASAEGFTVIFNKARDEEKTNTATP--RRSDPVFKNENYN 58

Query: 61 HKQYSAKKKWFCC 73
            QYS K+KWFCC
Sbjct: 59 TPQYSGKRKWFCC 71

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125554952|gb|EAZ00558.1| hypothetical protein OsI_22578 [Oryza sativa Indica Group]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 6/73 (8%)

Query: 7  GSTLPKFGEWDVNDPATADGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNHHKQYSA 66
          G  LPKFGEWDVNDPA+ADGF+ +F KA +EK+GG+   G  T     +T T   + Y+ 
Sbjct: 29 GRPLPKFGEWDVNDPASADGFTVIFNKARDEKKGGN---GQDTDSPCKETRTERVESYAP 85

Query: 67 K---KKWFCCVFS 76
          K   KKWFCCV S
Sbjct: 86 KTNSKKWFCCVTS 98

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226506802|ref|NP_001147003.1| LOC100280613 [Zea mays] gi|195606382|gb|ACG25021.1| nitrate-induced NOI protein [Zea mays] gi|413953732|gb|AFW86381.1| hypothetical protein ZEAMMB73_687899 [Zea mays]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 47/71 (66%), Gaps = 6/71 (8%)

Query: 7  GSTLPKFGEWDVNDPATADGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNHHKQYSA 66
          G  LPKFG+WDVNDPA+ADGF+ +F KA +EK+GG+   G  T      T T   + Y+A
Sbjct: 6  GRPLPKFGDWDVNDPASADGFTVIFNKARDEKKGGN---GQDTESPSKDTRTERVESYAA 62

Query: 67 K---KKWFCCV 74
          K   KKWFCCV
Sbjct: 63 KPSTKKWFCCV 73

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55296571|dbj|BAD69095.1| putative nitrate-induced NOI protein [Oryza sativa Japonica Group] gi|86361426|gb|ABC94596.1| nitrate-induced NOI protein-like protein [Oryza sativa Indica Group] gi|90969895|gb|ABE02740.1| nitrate-induced NOI protein-like protein [Oryza sativa Japonica Group] gi|222635408|gb|EEE65540.1| hypothetical protein OsJ_21007 [Oryza sativa Japonica Group] gi|256258946|gb|ACU64875.1| NIP [Oryza nivara]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 6/77 (7%)

Query: 3  SHGHGSTLPKFGEWDVNDPATADGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNHHK 62
          S   G  LPKFGEWDVNDPA+ADGF+ +F KA +EK+GG+   G  T     +T T   +
Sbjct: 2  SEEAGRPLPKFGEWDVNDPASADGFTVIFNKARDEKKGGN---GQDTDSPCKETRTERVE 58

Query: 63 QYSAK---KKWFCCVFS 76
           Y+ K   KKWFCCV S
Sbjct: 59 SYAPKTNSKKWFCCVTS 75

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|256258956|gb|ACU64883.1| NIP [Oryza minuta] gi|256258965|gb|ACU64890.1| NIP [Oryza officinalis]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 6/77 (7%)

Query: 3  SHGHGSTLPKFGEWDVNDPATADGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNHHK 62
          S   G  LPKFGEWDVNDPA+ADGF+ +F KA +EK+GG+   G  T      T T   +
Sbjct: 2  SEEAGRPLPKFGEWDVNDPASADGFTVIFNKARDEKKGGN---GQDTDSPCKDTRTERVE 58

Query: 63 QYSAK---KKWFCCVFS 76
           Y+ K   KKWFCCV S
Sbjct: 59 SYAPKTNSKKWFCCVTS 75

Source: Oryza minuta

Species: Oryza minuta

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|162459794|ref|NP_001104900.1| LOC541680 [Zea mays] gi|2642213|gb|AAB86937.1| nitrate-induced NOI protein [Zea mays] gi|2895781|gb|AAC03022.1| nitrate-induced NOI protein [Zea mays] gi|413944342|gb|AFW76991.1| nitrate-induced NOI protein [Zea mays]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 46/71 (64%), Gaps = 6/71 (8%)

Query: 7  GSTLPKFGEWDVNDPATADGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNHHKQYSA 66
          G  LPKFGEWDVNDPA+ADGF+ +F KA +EK+GG+   G  T        T   + Y+A
Sbjct: 6  GRPLPKFGEWDVNDPASADGFTVIFNKARDEKKGGN---GQDTDSPSKDPRTERVESYAA 62

Query: 67 K---KKWFCCV 74
          K   KKWFCCV
Sbjct: 63 KPSTKKWFCCV 73

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
TAIR|locus:2827881	69	AT2G17660 "AT2G17660" [Arabido	0.907	1.0	0.460	1.2e-12
TAIR|locus:2058284	73	AT2G04410 "AT2G04410" [Arabido	0.842	0.876	0.485	1.5e-12
TAIR|locus:2162002	80	AT5G63270 "AT5G63270" [Arabido	0.868	0.825	0.452	1.9e-12
TAIR|locus:4010713927	68	AT4G35655 "AT4G35655" [Arabido	0.868	0.970	0.474	8.2e-12
TAIR|locus:505006667	73	AT5G40645 "AT5G40645" [Arabido	0.763	0.794	0.468	1.2e-10
TAIR|locus:2176620	130	NOI "AT5G55850" [Arabidopsis t	0.657	0.384	0.509	2.9e-09
TAIR|locus:2101185	89	AT3G48450 "AT3G48450" [Arabido	0.947	0.808	0.356	2.6e-08
TAIR|locus:2090250	211	RIN4 "RPM1 interacting protein	0.802	0.289	0.352	2.7e-07

TAIR|locus:2827881 AT2G17660 "AT2G17660" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 35/76 (46%), Positives = 45/76 (59%)

Query:     1 MSSHGHGSTLPKFGEWDVNDPATADGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNH 60
             M+S+  G  LPKFGEWDVNDPATADGF+ +F KA E+K+ G        S +K  ++   
Sbjct:     1 MASNEAGRALPKFGEWDVNDPATADGFTVIFSKAGEDKKTGR-------SSTKTNSQRKQ 53

Query:    61 HKQYSAKKKWFCCVFS 76
                  A KKW C  F+
Sbjct:    54 DGDKPAVKKWLCFTFA 69

GO:0003674 "molecular_function" evidence=ND

GO:0010167 "response to nitrate" evidence=ISS

TAIR|locus:2058284 AT2G04410 "AT2G04410" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 34/70 (48%), Positives = 44/70 (62%)

Query:     7 GSTLPKFGEWDVNDPATADGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNHHKQYSA 66
             G  LPKFGEWDVNDP++A+GF+ +F KA  EK+GG    G   S  K +   N + +   
Sbjct:     5 GRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGG----GKSDSPGKDEPGYNKNGEVLE 60

Query:    67 K--KKWFCCV 74
             K  KKWFCC+
Sbjct:    61 KPAKKWFCCI 70

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2162002 AT5G63270 "AT5G63270" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 33/73 (45%), Positives = 46/73 (63%)

Query:     7 GSTLPKFGEWDVNDPATADGFSFVFIKASEEKRGGSAAAGNVTS-----RSKYKTETNHH 61
             G  LPKFGEWDVN+PA+A+GF+ +F KAS+EK+   A+     S     R++   + N+H
Sbjct:     6 GKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNSDQNNNH 65

Query:    62 KQYS--AKKKWFC 72
                +  AK KWFC
Sbjct:    66 SSQNPKAKNKWFC 78

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010167 "response to nitrate" evidence=ISS

TAIR|locus:4010713927 AT4G35655 "AT4G35655" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 37/78 (47%), Positives = 45/78 (57%)

Query:     1 MSSHGHGSTLPKFGEWDVNDPATADGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNH 60
             M+S+     LPKFGEWDVNDPATA+GF+ +F KA E+K+         T RS  K  +  
Sbjct:     1 MASNSDARPLPKFGEWDVNDPATAEGFTVIFSKAGEDKK---------TGRSSSKAPSQR 51

Query:    61 HKQYSAK--KKWFCCVFS 76
              KQ   K  KKW C  FS
Sbjct:    52 -KQDGVKPTKKWLCFTFS 68

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006667 AT5G40645 "AT5G40645" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 30/64 (46%), Positives = 42/64 (65%)

Query:    10 LPKFGEWDVNDPATADGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNHHKQYSAKKK 69
             LPKFGEWDVNDPA+A+GF+ +F KA ++K+  + A+G   S+ +     N+  Q    KK
Sbjct:    15 LPKFGEWDVNDPASAEGFTVIFAKARDDKK--TNASGRAASQRR----DNNKSQDEPTKK 68

Query:    70 WFCC 73
              FCC
Sbjct:    69 RFCC 72

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010167 "response to nitrate" evidence=ISS

TAIR|locus:2176620 NOI "AT5G55850" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 26/51 (50%), Positives = 35/51 (68%)

Query:     7 GSTLPKFGEWDVNDPATADGFSFVFIKASEEKR-GGSAAAGNVTSRSKYKT 56
             G  LPKFGEWDVNDPA+A+GF+ +F KA +EK+ GG   +   +S    K+
Sbjct:    21 GRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKS 71

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010167 "response to nitrate" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2101185 AT3G48450 "AT3G48450" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 31/87 (35%), Positives = 47/87 (54%)

Query:     1 MSSHGHGSTLPKFGEWDVNDPATADGFSFVFIKASEEKRG-GSAAAGNVTSRSKYKTET- 58
             M++      LPKFGEWD  +P +A+GF+ +F KA ++K+   +A AG  +  S  + E  
Sbjct:     1 MATGNRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKTMKTAVAGPESIVSPPRNEEP 60

Query:    59 ---------NHHKQYS----AKKKWFC 72
                      NHH ++S    +KKKW C
Sbjct:    61 PKNNNNHHHNHHTRHSQTPRSKKKWLC 87

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010167 "response to nitrate" evidence=ISS

TAIR|locus:2090250 RIN4 "RPM1 interacting protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 24/68 (35%), Positives = 38/68 (55%)

Query:     8 STLPKFGEWDVNDPATADGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNHHKQYSAK 67
             + +PKFG+WD N+P++ADG++ +F K  EE+  G+    NV+  S+  T   H    +  
Sbjct:   146 TVVPKFGDWDENNPSSADGYTHIFNKVREERSSGA----NVSGSSRTPT---HQSSRNPN 198

Query:    68 KKWFCCVF 75
                 CC F
Sbjct:   199 NTSSCCCF 206


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.127   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       76        76   0.00091  102 3  11 23  0.41    29
                                                     29  0.48    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  545 (58 KB)
  Total size of DFA:  113 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.82u 0.11s 8.93t   Elapsed:  00:00:01
  Total cpu time:  8.82u 0.11s 8.93t   Elapsed:  00:00:01
  Start:  Thu May  9 16:08:01 2013   End:  Thu May  9 16:08:02 2013

GO:0005634 "nucleus" evidence=ISM

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA;IMP

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0034051 "negative regulation of plant-type hypersensitive response" evidence=IMP

GO:0019897 "extrinsic to plasma membrane" evidence=IDA

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Sb10g010690.1 hypothetical protein (81 aa) (Sorghum bicolor)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	76
pfam05627	39	pfam05627, AvrRpt-cleavage, Cleavage site for path	3e-11

>gnl|CDD|203293 pfam05627, AvrRpt-cleavage, Cleavage site for pathogenic type III effector avirulence factor Avr

 Score = 52.2 bits (125), Expect = 3e-11
 Identities = 21/35 (60%), Positives = 29/35 (82%)

Query: 7  GSTLPKFGEWDVNDPATADGFSFVFIKASEEKRGG 41
          GS +PKFGEWD N+PA+A+GF+ +F KA +EK+ G
Sbjct: 5  GSAVPKFGEWDENNPASAEGFTVIFNKARDEKKTG 39

This domain is conserved in small families of otherwise unrelated proteins in both mono-cots and di-cots, suggesting that it has a conserved, plant-specific function. It is found both in the plant RIN4 (resistance R membrane-bound host-target protein) where it appears to contribute to the binding of the protein to both RCS (AvrRpt2 auto-cleavage site) and AvrB, the virulence factor from the infecting bacterium. The cleavage site for the AvrRpt2 avirulence protein would appear to be the sequence motifs VPQFGDW and LPKFGEW, both of which are highly conserved within the domain. Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	76
PF05627	39	AvrRpt-cleavage: Cleavage site for pathogenic type	99.85

>PF05627 AvrRpt-cleavage: Cleavage site for pathogenic type III effector avirulence factor Avr; InterPro: IPR008700 This domain is conserved in small families of otherwise unrelated proteins in both mono-cots and di-cots, suggesting that it has a conserved, plant-specific function

Probab=99.85  E-value=7.6e-23  Score=118.45  Aligned_cols=38  Identities=55%  Similarity=1.061  Sum_probs=13.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCceehhHHHHHHHcCC
Q 044404            4 HGHGSTLPKFGEWDVNDPATADGFSFVFIKASEEKRGG   41 (76)
Q Consensus         4 ~~~~~~vPkFG~WD~~~pasa~~yTviF~KareeKK~~   41 (76)
                      ++++++|||||+||++||++|++|||||+|||++||++
T Consensus         2 ~~~~~~vPkFG~WD~~~~~~~~~yT~iF~kar~~Kk~~   39 (39)
T PF05627_consen    2 PQKGSHVPKFGEWDENNPASAEGYTVIFEKAREEKKTG   39 (39)
T ss_dssp             ----------SGGGTT-TT---SS-EEEE---------
T ss_pred             CcCCCCCCCCCcccCCCCCCCCCeeehHHHHhhhccCC
Confidence            45789999999999999999999999999999999974

It is found both in the plant RIN4 (resistance R membrane-bound host-target protein) where it appears to contribute to the binding of the protein to both RCS (AvrRpt2 auto-cleavage site) and AvrB, the virulence factor from the infecting bacterium []. The cleavage site for the AvrRpt2 avirulence protein would appear to be the sequence motifs VPQFGDW and LPKFGEW, both of which are highly conserved within the domain []. ; PDB: 2NUD_C.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	76
2nud_C	35	The Structure Of The Type Iii Effector Avrb Complex		7e-05

>pdb|2NUD|C Chain C, The Structure Of The Type Iii Effector Avrb Complexed With A High-Affinity Rin4 Peptide Length = 35

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 8  STLPKFGEWDVNDPATADGFSFVFIKASEEK 38
          + +PKFG+WD N+P++ADG++ +F K  EE+
Sbjct: 5  TVVPKFGDWDENNPSSADGYTHIFNKVREER 35
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	76
2nud_C	35	RIN4, RPM1-interacting protein 4; AVRB RIN4 high-a	1e-10

>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV} Length = 35

 Score = 50.1 bits (119), Expect = 1e-10
 Identities = 15/34 (44%), Positives = 25/34 (73%)

Query: 5  GHGSTLPKFGEWDVNDPATADGFSFVFIKASEEK 38
             + +PKFG+WD N+P++ADG++ +F K  EE+
Sbjct: 2  EKVTVVPKFGDWDENNPSSADGYTHIFNKVREER 35

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	76
2nud_C	35	RIN4, RPM1-interacting protein 4; AVRB RIN4 high-a	99.86

>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV}

Probab=99.86  E-value=3.1e-23  Score=116.98  Aligned_cols=34  Identities=44%  Similarity=0.985  Sum_probs=22.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCceehhHHHHHHH
Q 044404            5 GHGSTLPKFGEWDVNDPATADGFSFVFIKASEEK   38 (76)
Q Consensus         5 ~~~~~vPkFG~WD~~~pasa~~yTviF~KareeK   38 (76)
                      +++++|||||+||++||+|+++|||||+||||||
T Consensus         2 ~~~~~vPkFG~WD~~n~~s~~~yT~iF~k~re~K   35 (35)
T 2nud_C            2 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREER   35 (35)
T ss_dssp             -------CCSGGGTTCTTCCCSSCEEEECC----
T ss_pred             CCCCCCCCCCcccCCCCCCCCCEeehhhhhhhcC
Confidence            5789999999999999999999999999999997

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00