Citrus Sinensis ID: 044422
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 519 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZUT4 | 500 | Pentatricopeptide repeat- | yes | no | 0.926 | 0.962 | 0.533 | 1e-154 | |
| Q9SX45 | 596 | Pentatricopeptide repeat- | no | no | 0.861 | 0.75 | 0.356 | 1e-78 | |
| Q9LZ19 | 635 | Pentatricopeptide repeat- | no | no | 0.797 | 0.651 | 0.350 | 2e-77 | |
| Q9LIQ7 | 633 | Pentatricopeptide repeat- | no | no | 0.705 | 0.578 | 0.381 | 1e-76 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.743 | 0.519 | 0.353 | 2e-76 | |
| Q7XJN6 | 860 | Pentatricopeptide repeat- | no | no | 0.705 | 0.425 | 0.390 | 7e-76 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.745 | 0.363 | 0.347 | 2e-74 | |
| Q9SI53 | 630 | Pentatricopeptide repeat- | no | no | 0.768 | 0.633 | 0.337 | 2e-74 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.678 | 0.405 | 0.387 | 9e-74 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.755 | 0.562 | 0.344 | 1e-73 |
| >sp|Q9ZUT4|PP192_ARATH Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 546 bits (1406), Expect = e-154, Method: Compositional matrix adjust.
Identities = 271/508 (53%), Positives = 354/508 (69%), Gaps = 27/508 (5%)
Query: 8 TCRKKKPCSALQSLKTLSIIYRSFCSQKLKQISSSKSLHKALRVLDIISPRTRDSTKTEV 67
+C + C A ++ S RS + + S + ++LRVLDIIS ++ + +
Sbjct: 2 SCLRNYYCRAFGYKQSRSCYSRSLNREIANESSEVERRARSLRVLDIISSKSGGVSNRQD 61
Query: 68 HLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLISMHHDLH 127
H +Q+F QTDS Q + DF + + G S+V ++++ L +
Sbjct: 62 HFGFVQEFRQTDSWRFRGQAISEDFDLSRTKNGVSSVLEEVM---------LEDSSSSVK 112
Query: 128 RERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVII 187
R+ DA LS+AV SCG R+ R G+ + CLA++ GFI++VY+GSSL+ LY +
Sbjct: 113 RDGWSFDAYGLSSAVRSCGLNRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVE 172
Query: 188 DAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACT 247
+AYKVFEEMP RNVVSWTA+I+ FAQEW+VD+CL+LY MR S +PND+TFT++LSACT
Sbjct: 173 NAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACT 232
Query: 248 GSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNS 307
GSGALGQGRS HCQT+ MG SY+ ++NSLISMYCKCG++++A +F+ KD+VSWNS
Sbjct: 233 GSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNS 292
Query: 308 MIAGYAQHGLAVRAIDLFEEMM-KQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKH 366
MIAGYAQHGLA++AI+LFE MM K KPDAIT+LGV+SSCRH GLV+EG+ +F+ MA+H
Sbjct: 293 MIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHAGLVKEGRKFFNLMAEH 352
Query: 367 GLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW-----------------EA 409
GLKPEL+HYSC+VDLLGR GLL+EA + I+ MP+ PN+VIW A
Sbjct: 353 GLKPELNHYSCLVDLLGRFGLLQEALELIENMPMKPNSVIWGSLLFSCRVHGDVWTGIRA 412
Query: 410 AESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYR 469
AE RL+LEP+CAATHVQLANLYA V W +AA VRKLMKDKGLKTNPGCSWIEI N V+
Sbjct: 413 AEERLMLEPDCAATHVQLANLYASVGYWKEAATVRKLMKDKGLKTNPGCSWIEINNYVFM 472
Query: 470 FRAEDKSNTRLSEILPVLDFLVDQMKTL 497
F+AED SN R+ EI+ VL L+D M+ L
Sbjct: 473 FKAEDGSNCRMLEIVHVLHCLIDHMEFL 500
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 294 bits (752), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 172/482 (35%), Positives = 265/482 (54%), Gaps = 35/482 (7%)
Query: 58 RTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVE 117
+ RDS + H +++ L +D +S + +G +S +FD D VV
Sbjct: 116 KLRDSNPFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDF--ASRLFDGAEDKDVVTWT 173
Query: 118 KLI-----------SMHHDLHRERLKVDASFLS--TAVTSCGSTRNIRGGAPYQCLAIRT 164
+I +M + + ++ V A+ ++ + + + G ++R G L + T
Sbjct: 174 AMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLET 233
Query: 165 GFI-ANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLEL 223
G + +V++GSSL+ +Y KC DA KVF+EMP RNVV+WTA+IA + Q D + +
Sbjct: 234 GRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLV 293
Query: 224 YRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCK 283
+ M S + PN+ T +S+LSAC GAL +GR HC I+ +LI +Y K
Sbjct: 294 FEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVK 353
Query: 284 CGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGV 343
CG +EEA+ VF +H K++ +W +MI G+A HG A A DLF M+ V P+ +TF+ V
Sbjct: 354 CGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAV 413
Query: 344 ISSCRHGGLVEEGKVYFDSM-AKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYP 402
+S+C HGGLVEEG+ F SM + ++P+ DHY+C+VDL GR GLLEEA+ I++MP+ P
Sbjct: 414 LSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEP 473
Query: 403 NAVIWEA----------------AESRLL-LEPECAATHVQLANLYAGVRCWDQAARVRK 445
V+W A A SR++ L+P + + LANLY+ + WD+ ARVRK
Sbjct: 474 TNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRK 533
Query: 446 LMKDKGLKTNPGCSWIEIMNVVYRFRA-EDKSNTRLSEILPVLDFLVDQMKTLGYVPEVH 504
MKD+ + +PG SWIE+ + F A +DK ++ LD + QM+ + +V
Sbjct: 534 QMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKPLESDDLYKTLDTVGVQMRLPDELEDVT 593
Query: 505 EE 506
E
Sbjct: 594 AE 595
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 290 bits (742), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 156/445 (35%), Positives = 247/445 (55%), Gaps = 31/445 (6%)
Query: 104 VFDQLLDTPVVDVEKLISMHH-------------DLHRERLKVDASFLSTAVTSCGSTRN 150
VFD +L+ +V +I ++ ++ E K +S+ +++CG +
Sbjct: 118 VFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCD 177
Query: 151 IRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAA 210
CL+++T N+YVG++L+ LY+KC +I DA +VFE M ++ V+W++++A
Sbjct: 178 ALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAG 237
Query: 211 FAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSY 270
+ Q + L LYR + LE N FT +S++ AC+ AL +G+ H + GF S
Sbjct: 238 YVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSN 297
Query: 271 IQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMK 330
+ VA+S + MY KCG++ E+ +F+ + K++ WN++I+G+A+H + LFE+M +
Sbjct: 298 VFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQ 357
Query: 331 QRVKPDAITFLGVISSCRHGGLVEEGKVYFDSM-AKHGLKPELDHYSCVVDLLGRAGLLE 389
+ P+ +TF ++S C H GLVEEG+ +F M +GL P + HYSC+VD+LGRAGLL
Sbjct: 358 DGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLS 417
Query: 390 EARDFIKQMPIYPNAVIWE-----------------AAESRLLLEPECAATHVQLANLYA 432
EA + IK +P P A IW AAE LEPE A HV L+N+YA
Sbjct: 418 EAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYA 477
Query: 433 GVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVD 492
+ W++ A+ RKL++D +K G SWI+I + V+ F + + R+ EI LD LV
Sbjct: 478 ANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVI 537
Query: 493 QMKTLGYVPEVHEEKVDDASHKRTE 517
+ + GY P V E D K+ E
Sbjct: 538 KFRKFGYKPSVEHELHDVEIGKKEE 562
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 288 bits (736), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 146/383 (38%), Positives = 222/383 (57%), Gaps = 17/383 (4%)
Query: 138 LSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197
LS+ + + + R G ++ GF +NV+VGS+L+ LY++ ++ DA VF+ +
Sbjct: 164 LSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALE 223
Query: 198 VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRS 257
RN VSW A+IA A+ + LEL++ M P+ F++ S+ AC+ +G L QG+
Sbjct: 224 SRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKW 283
Query: 258 AHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGL 317
H I+ G N+L+ MY K G++ +A +F+ + +D+VSWNS++ YAQHG
Sbjct: 284 VHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGF 343
Query: 318 AVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSC 377
A+ FEEM + ++P+ I+FL V+++C H GL++EG Y++ M K G+ PE HY
Sbjct: 344 GKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVT 403
Query: 378 VVDLLGRAGLLEEARDFIKQMPIYPNAVIWE-----------------AAESRLLLEPEC 420
VVDLLGRAG L A FI++MPI P A IW+ AAE L+P+
Sbjct: 404 VVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDD 463
Query: 421 AATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRL 480
HV L N+YA W+ AARVRK MK+ G+K P CSW+EI N ++ F A D+ + +
Sbjct: 464 PGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQR 523
Query: 481 SEILPVLDFLVDQMKTLGYVPEV 503
EI + ++ ++K LGYVP+
Sbjct: 524 EEIARKWEEVLAKIKELGYVPDT 546
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (733), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 143/404 (35%), Positives = 237/404 (58%), Gaps = 18/404 (4%)
Query: 117 EKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSL 176
++ I ++ + LK+D + + +CG I G IRT F ++YVGS+L
Sbjct: 252 KEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSAL 311
Query: 177 ITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND 236
I +Y KC+ + A VF+ M +NVVSWTA++ + Q + + ++++ M+ S ++P+
Sbjct: 312 IDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDH 371
Query: 237 FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNN 296
+T +SAC +L +G H + I G Y+ V+NSL+++Y KCG+++++ +FN
Sbjct: 372 YTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNE 431
Query: 297 MHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEG 356
M+ +D VSW +M++ YAQ G AV I LF++M++ +KPD +T GVIS+C GLVE+G
Sbjct: 432 MNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKG 491
Query: 357 KVYFDSM-AKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWE------- 408
+ YF M +++G+ P + HYSC++DL R+G LEEA FI MP P+A+ W
Sbjct: 492 QRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACR 551
Query: 409 ----------AAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGC 458
AAES + L+P A + L+++YA WD A++R+ M++K +K PG
Sbjct: 552 NKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQ 611
Query: 459 SWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPE 502
SWI+ ++ F A+D+S+ L +I L+ L +++ GY P+
Sbjct: 612 SWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPD 655
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720 OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (729), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 150/384 (39%), Positives = 226/384 (58%), Gaps = 18/384 (4%)
Query: 129 ERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIID 188
+ LK D+ +++ +C +R G I+TG + NV+VGSSLI LYSKC +
Sbjct: 470 DSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEM 529
Query: 189 AYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG 248
A KVF M N+V+W ++I+ +++ ++ ++L+ +M + + P+ + TS+L A +
Sbjct: 530 ALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISS 589
Query: 249 SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSM 308
+ +L +G+S H T+R+G S + N+LI MY KCG + A +F M K +++WN M
Sbjct: 590 TASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLM 649
Query: 309 IAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK-HG 367
I GY HG + A+ LF+EM K PD +TFL +IS+C H G VEEGK F+ M + +G
Sbjct: 650 IYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYG 709
Query: 368 LKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW-----------------EAA 410
++P ++HY+ +VDLLGRAGLLEEA FIK MPI ++ IW +A
Sbjct: 710 IEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGILSA 769
Query: 411 ESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRF 470
E L +EPE +T+VQL NLY ++AA++ LMK+KGL PGCSWIE+ + F
Sbjct: 770 EKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLHKQPGCSWIEVSDRTNVF 829
Query: 471 RAEDKSNTRLSEILPVLDFLVDQM 494
+ S+ +EI VL+ L M
Sbjct: 830 FSGGSSSPMKAEIFNVLNRLKSNM 853
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 280 bits (717), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 141/406 (34%), Positives = 238/406 (58%), Gaps = 19/406 (4%)
Query: 131 LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAY 190
++ D L+ AV++C + ++ G A +GF +++ ++L+TLYS+C I ++Y
Sbjct: 587 IRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESY 646
Query: 191 KVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG 250
FE+ + ++W A+++ F Q + L ++ M ++ N+FTF S + A + +
Sbjct: 647 LAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETA 706
Query: 251 ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIA 310
+ QG+ H + G+ S +V N+LISMY KCG++ +A F + K+ VSWN++I
Sbjct: 707 NMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIIN 766
Query: 311 GYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSM-AKHGLK 369
Y++HG A+D F++M+ V+P+ +T +GV+S+C H GLV++G YF+SM +++GL
Sbjct: 767 AYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLS 826
Query: 370 PELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWE-----------------AAES 412
P+ +HY CVVD+L RAGLL A++FI++MPI P+A++W AA
Sbjct: 827 PKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHH 886
Query: 413 RLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRA 472
L LEPE +AT+V L+NLYA + WD R+ MK+KG+K PG SWIE+ N ++ F
Sbjct: 887 LLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYV 946
Query: 473 EDKSNTRLSEILPVLDFLVDQMKTLGYVPEVHEEKVDDASHKRTEP 518
D+++ EI L + +GYV + +++ H++ +P
Sbjct: 947 GDQNHPLADEIHEYFQDLTKRASEIGYVQDCF-SLLNELQHEQKDP 991
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (715), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/435 (33%), Positives = 243/435 (55%), Gaps = 36/435 (8%)
Query: 101 SSNVFDQLLDTPVVDVEKLISMHHD-------------LHRERLKVDASFLSTAVTSCGS 147
+ +FDQ+ V+ +IS + + R+ ++ + S+ + SC
Sbjct: 115 AHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNG 174
Query: 148 TRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAI 207
++R C I+ G ++V+V S+LI +++K DA VF+EM + + W +I
Sbjct: 175 MSDVR---MLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSI 231
Query: 208 IAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGF 267
I FAQ + D+ LEL++ M+ + T TS+L ACTG L G AH ++ +
Sbjct: 232 IGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--Y 289
Query: 268 FSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEE 327
+ + N+L+ MYCKCG++E+A+ VFN M +D+++W++MI+G AQ+G + A+ LFE
Sbjct: 290 DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFER 349
Query: 328 MMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK-HGLKPELDHYSCVVDLLGRAG 386
M KP+ IT +GV+ +C H GL+E+G YF SM K +G+ P +HY C++DLLG+AG
Sbjct: 350 MKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAG 409
Query: 387 LLEEARDFIKQMPIYPNAVIWE-----------------AAESRLLLEPECAATHVQLAN 429
L++A + +M P+AV W AA+ + L+PE A T+ L+N
Sbjct: 410 KLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSN 469
Query: 430 LYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDF 489
+YA + WD +R M+D+G+K PGCSWIE+ ++ F D S+ ++ E+ L+
Sbjct: 470 IYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQ 529
Query: 490 LVDQMKTLGYVPEVH 504
L+ ++ +GYVPE +
Sbjct: 530 LIHRLTGIGYVPETN 544
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (710), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 145/374 (38%), Positives = 229/374 (61%), Gaps = 22/374 (5%)
Query: 162 IRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCL 221
++T + + VG++L+ Y K + +A KVF + +++V+W+A++A +AQ + + +
Sbjct: 420 VKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAI 479
Query: 222 ELYRMMRNSMLEPNDFTFTSILSACTGSGA-LGQGRSAHCQTIRMGFFSYIQVANSLISM 280
+++ + ++PN+FTF+SIL+ C + A +GQG+ H I+ S + V+++L++M
Sbjct: 480 KMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTM 539
Query: 281 YCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITF 340
Y K GN+E A VF KD+VSWNSMI+GYAQHG A++A+D+F+EM K++VK D +TF
Sbjct: 540 YAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTF 599
Query: 341 LGVISSCRHGGLVEEGKVYFDSMAKH-GLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP 399
+GV ++C H GLVEEG+ YFD M + + P +H SC+VDL RAG LE+A I+ MP
Sbjct: 600 IGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMP 659
Query: 400 IYPNAVIWE-----------------AAESRLLLEPECAATHVQLANLYAGVRCWDQAAR 442
+ IW AAE + ++PE +A +V L+N+YA W + A+
Sbjct: 660 NPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAK 719
Query: 443 VRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPE 502
VRKLM ++ +K PG SWIE+ N Y F A D+S+ +I L+ L ++K LGY P+
Sbjct: 720 VRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPD 779
Query: 503 VHE--EKVDDASHK 514
+ +DD HK
Sbjct: 780 TSYVLQDIDD-EHK 792
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (710), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 159/461 (34%), Positives = 241/461 (52%), Gaps = 69/461 (14%)
Query: 104 VFDQLLDTPVVDVEKLISMHHD-------------LHRERLKVDASFLSTAVTSCGSTRN 150
VFD++ D VV LI+ + R++ D L++ +++C S
Sbjct: 209 VFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSA 268
Query: 151 IRGGAPYQCLAIRTGFIAN-VYVGSSLITLYSKCRVIIDAYKVFEEMPVRNV-------- 201
I+ G ++ + N + + ++ + +Y+KC I +A +F+ MP+RNV
Sbjct: 269 IKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMIS 328
Query: 202 -----------------------VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFT 238
VSW A+IA + Q + + L L+ +++ + P ++
Sbjct: 329 GYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYS 388
Query: 239 FTSILSACTGSGALGQGRSAHCQTIRMGF-FSY-----IQVANSLISMYCKCGNVEEAVY 292
F +IL AC L G AH ++ GF F I V NSLI MY KCG VEE
Sbjct: 389 FANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYL 448
Query: 293 VFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL 352
VF M +D VSWN+MI G+AQ+G A++LF EM++ KPD IT +GV+S+C H G
Sbjct: 449 VFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGF 508
Query: 353 VEEGKVYFDSMAKH-GLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA-- 409
VEEG+ YF SM + G+ P DHY+C+VDLLGRAG LEEA+ I++MP+ P++VIW +
Sbjct: 509 VEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLL 568
Query: 410 ---------------AESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKT 454
AE L +EP + +V L+N+YA + W+ VRK M+ +G+
Sbjct: 569 AACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTK 628
Query: 455 NPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMK 495
PGCSWI+I + F +DKS+ R +I +LD L+ +M+
Sbjct: 629 QPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMR 669
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 519 | ||||||
| 224140139 | 526 | predicted protein [Populus trichocarpa] | 0.980 | 0.967 | 0.626 | 0.0 | |
| 359481497 | 510 | PREDICTED: pentatricopeptide repeat-cont | 0.936 | 0.952 | 0.593 | 1e-172 | |
| 297741511 | 1400 | unnamed protein product [Vitis vinifera] | 0.930 | 0.345 | 0.593 | 1e-171 | |
| 356564808 | 501 | PREDICTED: pentatricopeptide repeat-cont | 0.851 | 0.882 | 0.566 | 1e-155 | |
| 449448934 | 524 | PREDICTED: pentatricopeptide repeat-cont | 0.886 | 0.877 | 0.571 | 1e-155 | |
| 255568478 | 501 | pentatricopeptide repeat-containing prot | 0.697 | 0.722 | 0.680 | 1e-154 | |
| 15228119 | 500 | pentatricopeptide repeat-containing prot | 0.926 | 0.962 | 0.533 | 1e-152 | |
| 297823557 | 500 | pentatricopeptide repeat-containing prot | 0.926 | 0.962 | 0.523 | 1e-151 | |
| 357508177 | 487 | Pentatricopeptide repeat-containing prot | 0.845 | 0.901 | 0.525 | 1e-145 | |
| 357127969 | 567 | PREDICTED: pentatricopeptide repeat-cont | 0.867 | 0.793 | 0.455 | 1e-117 |
| >gi|224140139|ref|XP_002323442.1| predicted protein [Populus trichocarpa] gi|222868072|gb|EEF05203.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/535 (62%), Positives = 401/535 (74%), Gaps = 26/535 (4%)
Query: 1 MNIIFLQTCRKKKPCSALQSLKTLSIIYRSFCSQKLKQISSSKSLHKALRVLDIISPRTR 60
MNI+ LQT +KK A +TLS +R F S K ++ + +K L KALR+LDII+P+T
Sbjct: 1 MNIVSLQTRLRKKIPYATHLFQTLSQ-HRPFSSHKFRRTTQTKRLDKALRILDIITPKTT 59
Query: 61 DSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLI 120
T + HLR+IQDF Q S Q+ ++DF NS G +VFD++L++ ++ ++
Sbjct: 60 APTNGQNHLRVIQDFFQAHSNRTSEQRLSNDFISPNSDNGDFSVFDEILESSFINNDE-- 117
Query: 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLY 180
D + L DAS LS AV+SC STR++RGG Y CLAI GFIAN Y+GSSL+T Y
Sbjct: 118 ----DSNATSLSFDASVLSNAVSSCASTRDLRGGIQYHCLAISAGFIANAYIGSSLVTFY 173
Query: 181 SKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFT 240
KC + +AYKVF+EMPVRNVVSWTAII+ FAQ+WQVDMCL+LY +MRNS L+PNDFTFT
Sbjct: 174 GKCGELDNAYKVFKEMPVRNVVSWTAIISGFAQDWQVDMCLQLYCLMRNSTLKPNDFTFT 233
Query: 241 SILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK 300
S+LSACTGSGALGQGRSAHCQ I MGF SY+ +AN+L+SMYCKCGNVE+A ++F NM GK
Sbjct: 234 SLLSACTGSGALGQGRSAHCQIIEMGFVSYLHIANALVSMYCKCGNVEDAFHIFENMVGK 293
Query: 301 DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYF 360
DIVSWNSMIAGYAQHGLAV+ I LFE M Q VKPDAITFLGV+SSCRH G VE G+ YF
Sbjct: 294 DIVSWNSMIAGYAQHGLAVQGIGLFERMKSQGVKPDAITFLGVLSSCRHAGFVEGGRNYF 353
Query: 361 DSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW------------- 407
+SM ++G+KPELDHYSC+VDLLGRAGLLEEA+ FI++MP+ PNAVIW
Sbjct: 354 NSMVEYGVKPELDHYSCIVDLLGRAGLLEEAQYFIERMPVSPNAVIWGSLVSSCRLHGSV 413
Query: 408 ----EAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEI 463
+AAE+ LLLEPECAATHVQLANLYA V WDQAARVRKLMKD+ LKTNPGCSWIEI
Sbjct: 414 WIGIQAAENTLLLEPECAATHVQLANLYASVGFWDQAARVRKLMKDRRLKTNPGCSWIEI 473
Query: 464 MNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEVHEEKVDDASHKRTEP 518
N VYRFRAED SNTR+SEI VLD+LVD M TLG PE+ E V +A H P
Sbjct: 474 KNEVYRFRAEDCSNTRVSEIHDVLDWLVDHMITLGRAPEMQE--VSEAIHDNVCP 526
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481497|ref|XP_002273989.2| PREDICTED: pentatricopeptide repeat-containing protein At2g37320-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 313/527 (59%), Positives = 386/527 (73%), Gaps = 41/527 (7%)
Query: 1 MNIIFLQTCRKKKPCSALQSLKTLSIIYRSFCSQKLKQISSSKSLHKALRVLDIISPRTR 60
MN I L+ +KKP S + S+ + S+ S + I HK L +L+++SP T
Sbjct: 1 MNSISLRQFIRKKPSSPI------SVPFSSYGSSFSQNIKRKTKTHKQLGILNLVSPTTD 54
Query: 61 DSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLI 120
+ + HLRLIQDFL + ++ + DF +NS +SN +L+T ++ E+ I
Sbjct: 55 CAENRQTHLRLIQDFLPIPTNQFAQKRASDDFAHSNSLEETSN----MLETNFLNEEESI 110
Query: 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLY 180
VDAS LS A++ C S+R+++ G + CLAIRTGF+ NVYVGS LI+ Y
Sbjct: 111 ------------VDASALSHALSLCASSRSLKSGVQFHCLAIRTGFVGNVYVGSCLISFY 158
Query: 181 SKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFT 240
SKC + AY+VFEEMPV+NVVSWTAIIA FAQEW VD CLELY MRNS L+PND TFT
Sbjct: 159 SKCGELCHAYRVFEEMPVKNVVSWTAIIAGFAQEWLVDGCLELYSRMRNSTLKPNDLTFT 218
Query: 241 SILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK 300
+LS CTG G+LG+GRSAHCQTI MGF SY+ VAN+LISMYCKCGNVE+A Y+F M GK
Sbjct: 219 CLLSTCTGGGSLGRGRSAHCQTIEMGFDSYVHVANALISMYCKCGNVEDAYYIFERMDGK 278
Query: 301 DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYF 360
DIVSWNSMIAG+AQHGLAV+AIDLFEEM KQ++KPDAITFLGV+SSCRH GLV++G+ YF
Sbjct: 279 DIVSWNSMIAGHAQHGLAVQAIDLFEEMKKQKLKPDAITFLGVLSSCRHVGLVKQGQFYF 338
Query: 361 DSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW------------- 407
+SM +HG+KPELDH++CVVDLLGRAGLLEEARDFI +MPI+PNA+IW
Sbjct: 339 NSMVEHGVKPELDHFACVVDLLGRAGLLEEARDFIVKMPIHPNAIIWGSLLSSCRLHGSV 398
Query: 408 ----EAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEI 463
EAAE+RLLLEPECAATH+QLA+LYA V CWDQAARVRKLMK KGLKT PGCSWIE+
Sbjct: 399 WLGIEAAENRLLLEPECAATHLQLASLYASVGCWDQAARVRKLMKGKGLKTEPGCSWIEV 458
Query: 464 MNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEVHEEKVDD 510
N +YRFRAE+ SN L+EI V+D L D M++LGY ++HEE+ DD
Sbjct: 459 RNEIYRFRAEEWSNGGLTEISAVVDSLADHMRSLGY--DMHEEEADD 503
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741511|emb|CBI32643.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 311/524 (59%), Positives = 384/524 (73%), Gaps = 41/524 (7%)
Query: 4 IFLQTCRKKKPCSALQSLKTLSIIYRSFCSQKLKQISSSKSLHKALRVLDIISPRTRDST 63
I L+ +KKP S + S+ + S+ S + I HK L +L+++SP T +
Sbjct: 865 ISLRQFIRKKPSSPI------SVPFSSYGSSFSQNIKRKTKTHKQLGILNLVSPTTDCAE 918
Query: 64 KTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLISMH 123
+ HLRLIQDFL + ++ + DF +NS +SN +L+T ++ E+ I
Sbjct: 919 NRQTHLRLIQDFLPIPTNQFAQKRASDDFAHSNSLEETSN----MLETNFLNEEESI--- 971
Query: 124 HDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKC 183
VDAS LS A++ C S+R+++ G + CLAIRTGF+ NVYVGS LI+ YSKC
Sbjct: 972 ---------VDASALSHALSLCASSRSLKSGVQFHCLAIRTGFVGNVYVGSCLISFYSKC 1022
Query: 184 RVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSIL 243
+ AY+VFEEMPV+NVVSWTAIIA FAQEW VD CLELY MRNS L+PND TFT +L
Sbjct: 1023 GELCHAYRVFEEMPVKNVVSWTAIIAGFAQEWLVDGCLELYSRMRNSTLKPNDLTFTCLL 1082
Query: 244 SACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIV 303
S CTG G+LG+GRSAHCQTI MGF SY+ VAN+LISMYCKCGNVE+A Y+F M GKDIV
Sbjct: 1083 STCTGGGSLGRGRSAHCQTIEMGFDSYVHVANALISMYCKCGNVEDAYYIFERMDGKDIV 1142
Query: 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSM 363
SWNSMIAG+AQHGLAV+AIDLFEEM KQ++KPDAITFLGV+SSCRH GLV++G+ YF+SM
Sbjct: 1143 SWNSMIAGHAQHGLAVQAIDLFEEMKKQKLKPDAITFLGVLSSCRHVGLVKQGQFYFNSM 1202
Query: 364 AKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW---------------- 407
+HG+KPELDH++CVVDLLGRAGLLEEARDFI +MPI+PNA+IW
Sbjct: 1203 VEHGVKPELDHFACVVDLLGRAGLLEEARDFIVKMPIHPNAIIWGSLLSSCRLHGSVWLG 1262
Query: 408 -EAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNV 466
EAAE+RLLLEPECAATH+QLA+LYA V CWDQAARVRKLMK KGLKT PGCSWIE+ N
Sbjct: 1263 IEAAENRLLLEPECAATHLQLASLYASVGCWDQAARVRKLMKGKGLKTEPGCSWIEVRNE 1322
Query: 467 VYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEVHEEKVDD 510
+YRFRAE+ SN L+EI V+D L D M++LGY ++HEE+ DD
Sbjct: 1323 IYRFRAEEWSNGGLTEISAVVDSLADHMRSLGY--DMHEEEADD 1364
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564808|ref|XP_003550640.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37320-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 274/484 (56%), Positives = 354/484 (73%), Gaps = 42/484 (8%)
Query: 43 KSLHKALRVLDIISPRTRDST--KTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFG 100
K L A RVL+++S + R +T + + HLRLI D L+ + + H+ + TN T
Sbjct: 34 KGLAIAQRVLNLLSSQKRGTTVDRRQSHLRLIDDMLE----NYVTIPLGHN-SATNGT-- 86
Query: 101 SSNVFDQLLDTPVVDVEKLISMHHDLHRER-LKVDASFLSTAVTSCGSTRNIRGGAPYQC 159
T + +E + LH E+ VD FLS AV+SCGS R++ GG Y C
Sbjct: 87 ----------TAEITIESSV-----LHMEQGFGVDVFFLSQAVSSCGSKRDLWGGIQYHC 131
Query: 160 LAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDM 219
LAI TGF+A+VYVGSSLI+LYS+C + DA +VFEEMPVRNVVSWTAIIA FAQEW VDM
Sbjct: 132 LAITTGFVASVYVGSSLISLYSRCAFLGDACRVFEEMPVRNVVSWTAIIAGFAQEWHVDM 191
Query: 220 CLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLIS 279
CLEL++ MR S L PN FT+TS+LSAC GSGALG GR AHCQ IRMGF SY+ + N+LIS
Sbjct: 192 CLELFQQMRGSDLRPNYFTYTSLLSACMGSGALGHGRCAHCQIIRMGFHSYLHIENALIS 251
Query: 280 MYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAIT 339
MY KCG +++A+++F NM +D+V+WN+MI+GYAQHGLA AI+LFEEM+KQ V PDA+T
Sbjct: 252 MYSKCGAIDDALHIFENMVSRDVVTWNTMISGYAQHGLAQEAINLFEEMIKQGVNPDAVT 311
Query: 340 FLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP 399
+LGV+SSCRHGGLV+EG+VYF+SM +HG++P LDHYSC+VDLLGRAGLL EARDFI+ MP
Sbjct: 312 YLGVLSSCRHGGLVKEGQVYFNSMVEHGVQPGLDHYSCIVDLLGRAGLLLEARDFIQNMP 371
Query: 400 IYPNAVIW-----------------EAAESRLLLEPECAATHVQLANLYAGVRCWDQAAR 442
I+PNAV+W EAAE+RLL+EP C+AT QLANLYA V W++ AR
Sbjct: 372 IFPNAVVWGSLLSSSRLHGSVPIGIEAAENRLLMEPGCSATLQQLANLYARVGWWNKVAR 431
Query: 443 VRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPE 502
VRK MKDKGLK NPGCSW+E+ + V+RF A+DKSN+R++++L +++ L+D M +L +
Sbjct: 432 VRKSMKDKGLKPNPGCSWVEVKSKVHRFEAQDKSNSRMADMLLIMNSLMDHMSSLNLQSQ 491
Query: 503 VHEE 506
+ EE
Sbjct: 492 MFEE 495
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448934|ref|XP_004142220.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37320-like [Cucumis sativus] gi|449502632|ref|XP_004161699.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37320-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 280/490 (57%), Positives = 358/490 (73%), Gaps = 30/490 (6%)
Query: 42 SKSLHKALRVLDIISPRTRDSTKT-EVHLRLIQDFLQTDSKHLDSQKF--NHDFTGTNST 98
+ +L K R+LD+ISP+ S ++ + HLRLIQDFLQTDS SQ D +
Sbjct: 42 TTNLPKPPRLLDLISPKGDVSYESRQTHLRLIQDFLQTDSGQCRSQTLPVGCDSRSIGLS 101
Query: 99 FGSSNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQ 158
SS V DQ ++ DV+ R K +A+ +S+ ++ C S RN+RGG Y
Sbjct: 102 KDSSFVLDQECESGHWDVQSFAG--------RFKFNANDISSVLSLCNSQRNLRGGIQYH 153
Query: 159 CLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVD 218
+AIRTGFIANVYVGSSL++LY KC + +AY+VF+EMPVRNVVSWTAIIA FA EWQV+
Sbjct: 154 SVAIRTGFIANVYVGSSLVSLYGKCGELSNAYRVFDEMPVRNVVSWTAIIAGFAVEWQVN 213
Query: 219 MCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLI 278
MCLEL++ M+ L+PN+FTF +IL+ACTGSGALG GRS HCQT++MGF SY+ VAN+LI
Sbjct: 214 MCLELFQEMKRMALQPNEFTFVTILTACTGSGALGVGRSLHCQTVKMGFHSYLHVANALI 273
Query: 279 SMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR-VKPDA 337
SMYCKCG + A+Y+F M KD VSWNSMIAGYAQHGL++RAIDLF+ M KQ+ V+ DA
Sbjct: 274 SMYCKCGALNFALYIFEAMEVKDTVSWNSMIAGYAQHGLSLRAIDLFKAMRKQKQVEADA 333
Query: 338 ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQ 397
ITFLGV+SSCRH G VEEG+ YF+ M + GLKPELDHYSCV+DLLGRAGLL+EA++FI++
Sbjct: 334 ITFLGVLSSCRHAGFVEEGRHYFNLMVELGLKPELDHYSCVIDLLGRAGLLKEAQNFIEK 393
Query: 398 MPIYPNAVIW-----------------EAAESRLLLEPECAATHVQLANLYAGVRCWDQA 440
MPI PN+++W +AAESRLLL+P+CA+TH+QL NLYA D A
Sbjct: 394 MPITPNSIVWGSLLSACRLHGNVWIGLKAAESRLLLQPDCASTHLQLTNLYAKAGYLDDA 453
Query: 441 ARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYV 500
AR+RK+MKDKGLKT PG SWIEI N VYRF+AEDKSN + EI ++D +V+ M+ +G
Sbjct: 454 ARLRKIMKDKGLKTAPGYSWIEIQNKVYRFKAEDKSNPLMVEIFGLIDGMVNHMRFVGCA 513
Query: 501 PEVHEEKVDD 510
E+ E+KV++
Sbjct: 514 HEL-EDKVNE 522
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568478|ref|XP_002525213.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535510|gb|EEF37179.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 258/379 (68%), Positives = 311/379 (82%), Gaps = 17/379 (4%)
Query: 149 RNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAII 208
R++ GG + CLAI +GFI+N YVGSSLITLY KC + +A+K+F EMPVRNVV+WTAII
Sbjct: 120 RDLPGGIQFHCLAITSGFISNSYVGSSLITLYGKCGKLDNAHKLFHEMPVRNVVTWTAII 179
Query: 209 AAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFF 268
+ FAQE QVD+CLEL+ +MRNS L+PNDFTFTS+LSACTGSGALGQG SAHCQ I+MGF
Sbjct: 180 SGFAQECQVDVCLELFSVMRNSTLKPNDFTFTSLLSACTGSGALGQGTSAHCQIIQMGFH 239
Query: 269 SYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEM 328
SY+ VAN+LISMYCK G+V +A Y+FNN++ KDIVSWNSMI+GYAQHGLA++AIDLFE+M
Sbjct: 240 SYLHVANALISMYCKSGSVHDAFYIFNNIYSKDIVSWNSMISGYAQHGLAMQAIDLFEKM 299
Query: 329 MKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLL 388
K VKPD+ITFLGV+S+CRH G V+ G+ YF+SM ++ L+P+LDHYSC+VDLLGRAGL+
Sbjct: 300 TKLGVKPDSITFLGVLSACRHAGFVQGGRNYFNSMVEYHLRPQLDHYSCLVDLLGRAGLI 359
Query: 389 EEARDFIKQMPIYPNAVIW-----------------EAAESRLLLEPECAATHVQLANLY 431
EEA D I +MPI PNAVIW +AAE RLLLEP CAATHVQLANLY
Sbjct: 360 EEALDIILRMPILPNAVIWGSLLSSCRLHGSVWIGIQAAEQRLLLEPACAATHVQLANLY 419
Query: 432 AGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLV 491
A VR WD+AA+VRK+MKD GLKTNPG SWIEI N V+RFRAED+SNTR+ EIL VLD L+
Sbjct: 420 ASVRYWDKAAKVRKVMKDTGLKTNPGYSWIEIKNKVHRFRAEDRSNTRVGEILTVLDCLL 479
Query: 492 DQMKTLGYVPEVHEEKVDD 510
D M LGYVPE+ +E+V+D
Sbjct: 480 DHMMILGYVPELIKEEVND 498
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228119|ref|NP_181269.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75216847|sp|Q9ZUT4.1|PP192_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37320 gi|4056486|gb|AAC98052.1| hypothetical protein [Arabidopsis thaliana] gi|37202040|gb|AAQ89635.1| At2g37320 [Arabidopsis thaliana] gi|51969760|dbj|BAD43572.1| hypothetical protein [Arabidopsis thaliana] gi|330254289|gb|AEC09383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 271/508 (53%), Positives = 354/508 (69%), Gaps = 27/508 (5%)
Query: 8 TCRKKKPCSALQSLKTLSIIYRSFCSQKLKQISSSKSLHKALRVLDIISPRTRDSTKTEV 67
+C + C A ++ S RS + + S + ++LRVLDIIS ++ + +
Sbjct: 2 SCLRNYYCRAFGYKQSRSCYSRSLNREIANESSEVERRARSLRVLDIISSKSGGVSNRQD 61
Query: 68 HLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLISMHHDLH 127
H +Q+F QTDS Q + DF + + G S+V ++++ L +
Sbjct: 62 HFGFVQEFRQTDSWRFRGQAISEDFDLSRTKNGVSSVLEEVM---------LEDSSSSVK 112
Query: 128 RERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVII 187
R+ DA LS+AV SCG R+ R G+ + CLA++ GFI++VY+GSSL+ LY +
Sbjct: 113 RDGWSFDAYGLSSAVRSCGLNRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVE 172
Query: 188 DAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACT 247
+AYKVFEEMP RNVVSWTA+I+ FAQEW+VD+CL+LY MR S +PND+TFT++LSACT
Sbjct: 173 NAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACT 232
Query: 248 GSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNS 307
GSGALGQGRS HCQT+ MG SY+ ++NSLISMYCKCG++++A +F+ KD+VSWNS
Sbjct: 233 GSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNS 292
Query: 308 MIAGYAQHGLAVRAIDLFEEMM-KQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKH 366
MIAGYAQHGLA++AI+LFE MM K KPDAIT+LGV+SSCRH GLV+EG+ +F+ MA+H
Sbjct: 293 MIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHAGLVKEGRKFFNLMAEH 352
Query: 367 GLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW-----------------EA 409
GLKPEL+HYSC+VDLLGR GLL+EA + I+ MP+ PN+VIW A
Sbjct: 353 GLKPELNHYSCLVDLLGRFGLLQEALELIENMPMKPNSVIWGSLLFSCRVHGDVWTGIRA 412
Query: 410 AESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYR 469
AE RL+LEP+CAATHVQLANLYA V W +AA VRKLMKDKGLKTNPGCSWIEI N V+
Sbjct: 413 AEERLMLEPDCAATHVQLANLYASVGYWKEAATVRKLMKDKGLKTNPGCSWIEINNYVFM 472
Query: 470 FRAEDKSNTRLSEILPVLDFLVDQMKTL 497
F+AED SN R+ EI+ VL L+D M+ L
Sbjct: 473 FKAEDGSNCRMLEIVHVLHCLIDHMEFL 500
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297823557|ref|XP_002879661.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325500|gb|EFH55920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 266/508 (52%), Positives = 356/508 (70%), Gaps = 27/508 (5%)
Query: 8 TCRKKKPCSALQSLKTLSIIYRSFCSQKLKQISSSKSLHKALRVLDIISPRTRDSTKTEV 67
+C C A++ +++ S RS + S + ++LRVLDIIS ++ + +
Sbjct: 2 SCLSNYYCRAVRYIQSRSCYSRSLNRDIANESSEVERRARSLRVLDIISSKSGGVSNRQN 61
Query: 68 HLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLISMHHDLH 127
H +Q+FLQTDS+ Q + DF + + G S+V ++++ L +
Sbjct: 62 HFGFVQEFLQTDSRQFRGQAISEDFDLSRTKNGVSSVLEEVM---------LEDSSSSVK 112
Query: 128 RERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVII 187
R+ DA LS+AV SCGS R+ R G+ + CLA++ GFI++VY+GSSL+ LY +
Sbjct: 113 RDGWSFDAYGLSSAVRSCGSNRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVE 172
Query: 188 DAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACT 247
+A+KVF EMP NVVSWTA+I+ FAQEW+VD+C++LY MRNS +PND+TFT++LSACT
Sbjct: 173 NAHKVFAEMPDNNVVSWTAMISGFAQEWRVDICMKLYSEMRNSTSDPNDYTFTALLSACT 232
Query: 248 GSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNS 307
GSGALGQGRS HCQT++MG SY+ ++NSLISMYCKCG++++A +F+ KD+VSWNS
Sbjct: 233 GSGALGQGRSVHCQTLQMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNS 292
Query: 308 MIAGYAQHGLAVRAIDLFEEMM-KQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKH 366
MIAGYAQ+GLA +AI+LFE MM K +KPDAIT+LG++SSCRH GLV EG+ +F+ MA+
Sbjct: 293 MIAGYAQYGLATQAIELFELMMPKSGIKPDAITYLGLLSSCRHAGLVIEGRKFFNLMAER 352
Query: 367 GLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW-----------------EA 409
GLKPEL+HYSC+VDLLGR GLL+EA + I+ MP+ PN+VIW A
Sbjct: 353 GLKPELNHYSCLVDLLGRFGLLQEALELIENMPMKPNSVIWGSLLFSCRVHGDVWMGIRA 412
Query: 410 AESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYR 469
AE RL+LEPECAATHVQLANLYA V W +AA VRKLMKDKGL+TNPGCSWIEI N ++
Sbjct: 413 AEERLILEPECAATHVQLANLYASVGYWKEAATVRKLMKDKGLRTNPGCSWIEIDNNIFM 472
Query: 470 FRAEDKSNTRLSEILPVLDFLVDQMKTL 497
F+AED SN R+ EI+ VL L+D M+ L
Sbjct: 473 FKAEDGSNCRMLEIVHVLHCLIDHMEFL 500
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357508177|ref|XP_003624377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355499392|gb|AES80595.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 264/502 (52%), Positives = 337/502 (67%), Gaps = 63/502 (12%)
Query: 27 IYRSFCSQKLKQISSSKSLHKALRVLDIISPR--TRDSTKTEVHLRLIQDFLQTDSKHLD 84
I+R F +L +++K L ALR+L ++SP+ D HLRL++D L+
Sbjct: 22 IFRPFSFYRLGPKNTNKDLTNALRILKLVSPKKTVTDIENRRSHLRLVEDILENT----- 76
Query: 85 SQKFNHDFTGTNSTFGSS--NVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAV 142
T + GS+ V + +L++ V+++E + L +D FLS A+
Sbjct: 77 ----------TTNPLGSNLKTVTETILESSVLEME-----------QGLGIDVCFLSHAL 115
Query: 143 TSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVV 202
+ CGS R+ GG Y CLAIR GFIANVYVGSSLI+LYS+C ++ DAY+VF+EM VRNVV
Sbjct: 116 SLCGSKRDFYGGIQYHCLAIRIGFIANVYVGSSLISLYSRCGLLGDAYRVFDEMSVRNVV 175
Query: 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQT 262
SWTAIIA FAQEW+VDMCLEL+R MR L+PN FT+TS+LSAC GSGALG GR HCQ
Sbjct: 176 SWTAIIAGFAQEWRVDMCLELFRRMRGLELKPNYFTYTSLLSACMGSGALGHGRGVHCQI 235
Query: 263 IRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAI 322
I+MGF Y+ V N+LI+MY KCG + +A+Y+F NM KD+V+WNSMI G G
Sbjct: 236 IQMGFHCYLHVENALIAMYSKCGVIVDALYIFENMVSKDVVTWNSMIVGMRIMG------ 289
Query: 323 DLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLL 382
V PDA+TFLG++SSCRHGGLV+EG+VYF SM HGL+PELDHYSC+VDLL
Sbjct: 290 ----------VNPDAVTFLGILSSCRHGGLVKEGQVYFSSMVDHGLQPELDHYSCIVDLL 339
Query: 383 GRAGLLEEARDFIKQMPIYPNAVIW-----------------EAAESRLLLEPECAATHV 425
GRAGLL EA DFI+ MP+ PNAVIW AAESRL LEP C++T +
Sbjct: 340 GRAGLLLEALDFIQNMPVCPNAVIWGSLLSSSRLHGNVWIGIRAAESRLSLEPGCSSTLL 399
Query: 426 QLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILP 485
QLANLYA V W+Q ARVR+LMKDKGLK NPGCSWIE+ N V+RF ++DKSN+R++ IL
Sbjct: 400 QLANLYASVGWWNQVARVRQLMKDKGLKPNPGCSWIEVKNKVHRFESQDKSNSRMNGILL 459
Query: 486 VLDFLVDQMKTLGYVPEVHEEK 507
++D LVD M L ++ EE+
Sbjct: 460 IMDSLVDHMSGLSLQFQISEEE 481
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357127969|ref|XP_003565649.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37320-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/483 (45%), Positives = 305/483 (63%), Gaps = 33/483 (6%)
Query: 43 KSLHKALRVLDIISPRTRDS-TKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGS 101
+ +H ALRVL +I + + + H RLI D + L Q NH + F S
Sbjct: 78 RDIHDALRVLLLIPGKAFNGKAEGPSHSRLINDCMHDI---LGVQSENHGMHNGKAQFVS 134
Query: 102 SNVFDQLLDT-PVVDVEKLISMHH-----------DLHRERLKVDASFLSTAVTSCGSTR 149
++ L D + D+ SM+ ++ R + D S ++A++ C +
Sbjct: 135 ASSNPTLPDIIDLRDISACYSMNKFKKENKFMLLAEMRRRGISADVSIFASAISFCAVKQ 194
Query: 150 NIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIA 209
+IRGG L ++ G+ V G+SLI+LY++C + +AY+VF+ MPVRNVVSWTA+I+
Sbjct: 195 SIRGGGQLHALLVKVGYDLAVLSGTSLISLYARCYQLENAYQVFQNMPVRNVVSWTALIS 254
Query: 210 AFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFS 269
+AQ+ QV+ CL+++++MR S PND TF +I S CT LG GRS H +RMGF
Sbjct: 255 GYAQDNQVEPCLQVFQLMRQSACRPNDITFATIFSVCTNHALLGLGRSVHGLELRMGFDL 314
Query: 270 YIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMM 329
+ + N+LISMY KCG+++EA ++F ++ KD+VSWNSMI GY+Q+GLA + L +EM
Sbjct: 315 CVHILNALISMYAKCGSIDEAQFIFQSIACKDLVSWNSMIFGYSQYGLAEHCLKLLKEME 374
Query: 330 KQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLE 389
K+ + PD I+FLG++SSCRH LVEEG+ F +M K G++PELDHYSC+VDLLGRAGLL+
Sbjct: 375 KEHIVPDVISFLGILSSCRHACLVEEGRRCFKAMLKLGIEPELDHYSCMVDLLGRAGLLD 434
Query: 390 EARDFIKQMPIYPNAVIW-----------------EAAESRLLLEPECAATHVQLANLYA 432
EA D I M + PNAVIW AAE RL LEP CAATHVQLANLYA
Sbjct: 435 EACDLIHTMSMTPNAVIWGSLLSACRMYGNIPIGIHAAEHRLKLEPSCAATHVQLANLYA 494
Query: 433 GVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVD 492
+ CW ARVRK+MK++GLKTN GCSWIEI + VY F AE++S ++++ +L VLD L
Sbjct: 495 SIDCWSDVARVRKMMKERGLKTNTGCSWIEIGSKVYTFTAENRSKSQVNNVLSVLDCLQS 554
Query: 493 QMK 495
M+
Sbjct: 555 HME 557
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 519 | ||||||
| TAIR|locus:2049736 | 500 | AT2G37320 "AT2G37320" [Arabido | 0.753 | 0.782 | 0.516 | 1.9e-138 | |
| TAIR|locus:2011892 | 596 | AT1G50270 "AT1G50270" [Arabido | 0.693 | 0.604 | 0.368 | 1.8e-74 | |
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.560 | 0.391 | 0.376 | 6.7e-73 | |
| TAIR|locus:2056794 | 630 | REME1 "required for efficiency | 0.529 | 0.436 | 0.373 | 3.3e-71 | |
| TAIR|locus:2064828 | 860 | AT2G40720 [Arabidopsis thalian | 0.537 | 0.324 | 0.407 | 4.7e-71 | |
| TAIR|locus:2102852 | 657 | CRR2 "AT3G46790" [Arabidopsis | 0.560 | 0.442 | 0.372 | 6.8e-71 | |
| TAIR|locus:2149664 | 588 | MEF1 "mitochondrial RNA editin | 0.637 | 0.562 | 0.381 | 1.8e-70 | |
| TAIR|locus:2198546 | 760 | AT1G20230 "AT1G20230" [Arabido | 0.610 | 0.417 | 0.364 | 7e-70 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.560 | 0.273 | 0.349 | 1.1e-69 | |
| TAIR|locus:2091546 | 628 | AT3G13770 [Arabidopsis thalian | 0.549 | 0.453 | 0.388 | 2.6e-69 |
| TAIR|locus:2049736 AT2G37320 "AT2G37320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1053 (375.7 bits), Expect = 1.9e-138, Sum P(2) = 1.9e-138
Identities = 207/401 (51%), Positives = 277/401 (69%)
Query: 8 TCRKKKPCSALQSLKTLSIIYRSFCXXXXXXXXXXXXXXXALRVLDIISPRTRDSTKTEV 67
+C + C A ++ S RS +LRVLDIIS ++ + +
Sbjct: 2 SCLRNYYCRAFGYKQSRSCYSRSLNREIANESSEVERRARSLRVLDIISSKSGGVSNRQD 61
Query: 68 HLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLISMHHDLH 127
H +Q+F QTDS Q + DF + + G S+V ++++ L +
Sbjct: 62 HFGFVQEFRQTDSWRFRGQAISEDFDLSRTKNGVSSVLEEVM---------LEDSSSSVK 112
Query: 128 RERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVII 187
R+ DA LS+AV SCG R+ R G+ + CLA++ GFI++VY+GSSL+ LY +
Sbjct: 113 RDGWSFDAYGLSSAVRSCGLNRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVE 172
Query: 188 DAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACT 247
+AYKVFEEMP RNVVSWTA+I+ FAQEW+VD+CL+LY MR S +PND+TFT++LSACT
Sbjct: 173 NAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACT 232
Query: 248 GSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNS 307
GSGALGQGRS HCQT+ MG SY+ ++NSLISMYCKCG++++A +F+ KD+VSWNS
Sbjct: 233 GSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNS 292
Query: 308 MIAGYAQHGLAVRAIDLFEEMM-KQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKH 366
MIAGYAQHGLA++AI+LFE MM K KPDAIT+LGV+SSCRH GLV+EG+ +F+ MA+H
Sbjct: 293 MIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHAGLVKEGRKFFNLMAEH 352
Query: 367 GLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW 407
GLKPEL+HYSC+VDLLGR GLL+EA + I+ MP+ PN+VIW
Sbjct: 353 GLKPELNHYSCLVDLLGRFGLLQEALELIENMPMKPNSVIW 393
|
|
| TAIR|locus:2011892 AT1G50270 "AT1G50270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 622 (224.0 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 139/377 (36%), Positives = 213/377 (56%)
Query: 58 RTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVE 117
+ RDS + H +++ L +D +S + +G F +S +FD D VV
Sbjct: 116 KLRDSNPFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFD-F-ASRLFDGAEDKDVVTWT 173
Query: 118 KLI-----------SMHHDLHRERLKVDASFLS--TAVTSCGSTRNIRGGAPYQCLAIRT 164
+I +M + + ++ V A+ ++ + + + G ++R G L + T
Sbjct: 174 AMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLET 233
Query: 165 GFI-ANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLEL 223
G + +V++GSSL+ +Y KC DA KVF+EMP RNVV+WTA+IA + Q D + +
Sbjct: 234 GRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLV 293
Query: 224 YRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCK 283
+ M S + PN+ T +S+LSAC GAL +GR HC I+ +LI +Y K
Sbjct: 294 FEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVK 353
Query: 284 CGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGV 343
CG +EEA+ VF +H K++ +W +MI G+A HG A A DLF M+ V P+ +TF+ V
Sbjct: 354 CGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAV 413
Query: 344 ISSCRHGGLVEEGKVYFDSM-AKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYP 402
+S+C HGGLVEEG+ F SM + ++P+ DHY+C+VDL GR GLLEEA+ I++MP+ P
Sbjct: 414 LSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEP 473
Query: 403 NAVIWEAAESRLLLEPE 419
V+W A LL +
Sbjct: 474 TNVVWGALFGSCLLHKD 490
|
|
| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 595 (214.5 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
Identities = 110/292 (37%), Positives = 180/292 (61%)
Query: 117 EKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSL 176
++ I ++ + LK+D + + +CG I G IRT F ++YVGS+L
Sbjct: 252 KEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSAL 311
Query: 177 ITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND 236
I +Y KC+ + A VF+ M +NVVSWTA++ + Q + + ++++ M+ S ++P+
Sbjct: 312 IDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDH 371
Query: 237 FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNN 296
+T +SAC +L +G H + I G Y+ V+NSL+++Y KCG+++++ +FN
Sbjct: 372 YTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNE 431
Query: 297 MHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEG 356
M+ +D VSW +M++ YAQ G AV I LF++M++ +KPD +T GVIS+C GLVE+G
Sbjct: 432 MNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKG 491
Query: 357 KVYFDSM-AKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW 407
+ YF M +++G+ P + HYSC++DL R+G LEEA FI MP P+A+ W
Sbjct: 492 QRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGW 543
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| TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 533 (192.7 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
Identities = 105/281 (37%), Positives = 170/281 (60%)
Query: 128 RERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVII 187
R+ ++ + S+ + SC ++R C I+ G ++V+V S+LI +++K
Sbjct: 155 RDNVRPNVYTYSSVLRSCNGMSDVR---MLHCGIIKEGLESDVFVRSALIDVFAKLGEPE 211
Query: 188 DAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACT 247
DA VF+EM + + W +II FAQ + D+ LEL++ M+ + T TS+L ACT
Sbjct: 212 DALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACT 271
Query: 248 GSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNS 307
G L G AH ++ + + + N+L+ MYCKCG++E+A+ VFN M +D+++W++
Sbjct: 272 GLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWST 329
Query: 308 MIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK-H 366
MI+G AQ+G + A+ LFE M KP+ IT +GV+ +C H GL+E+G YF SM K +
Sbjct: 330 MISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLY 389
Query: 367 GLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW 407
G+ P +HY C++DLLG+AG L++A + +M P+AV W
Sbjct: 390 GIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTW 430
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| TAIR|locus:2064828 AT2G40720 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 586 (211.3 bits), Expect = 4.7e-71, Sum P(2) = 4.7e-71
Identities = 114/280 (40%), Positives = 175/280 (62%)
Query: 129 ERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIID 188
+ LK D+ +++ +C +R G I+TG + NV+VGSSLI LYSKC +
Sbjct: 470 DSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEM 529
Query: 189 AYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG 248
A KVF M N+V+W ++I+ +++ ++ ++L+ +M + + P+ + TS+L A +
Sbjct: 530 ALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISS 589
Query: 249 SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSM 308
+ +L +G+S H T+R+G S + N+LI MY KCG + A +F M K +++WN M
Sbjct: 590 TASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLM 649
Query: 309 IAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK-HG 367
I GY HG + A+ LF+EM K PD +TFL +IS+C H G VEEGK F+ M + +G
Sbjct: 650 IYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYG 709
Query: 368 LKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW 407
++P ++HY+ +VDLLGRAGLLEEA FIK MPI ++ IW
Sbjct: 710 IEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIW 749
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| TAIR|locus:2102852 CRR2 "AT3G46790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
Identities = 111/298 (37%), Positives = 176/298 (59%)
Query: 117 EKLISMHHDLHRERLKVD----ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYV 172
E+++ ++ ++R ++ D L V S + ++ G R G+ ++VY+
Sbjct: 160 EEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYI 219
Query: 173 GSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYR-MMRNSM 231
++L+ +Y++ + A VF MPVRNVVSW+A+IA +A+ + L +R MMR +
Sbjct: 220 MTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETK 279
Query: 232 -LEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEA 290
PN T S+L AC AL QG+ H +R G S + V ++L++MY +CG +E
Sbjct: 280 DSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVG 339
Query: 291 VYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG 350
VF+ MH +D+VSWNS+I+ Y HG +AI +FEEM+ P +TF+ V+ +C H
Sbjct: 340 QRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHE 399
Query: 351 GLVEEGKVYFDSMAK-HGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW 407
GLVEEGK F++M + HG+KP+++HY+C+VDLLGRA L+EA ++ M P +W
Sbjct: 400 GLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVW 457
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| TAIR|locus:2149664 MEF1 "mitochondrial RNA editing factor 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
Identities = 129/338 (38%), Positives = 194/338 (57%)
Query: 74 DFLQTDSKHLDSQKFNHDFTGTNSTFGSSNV--FDQLLDTPVVDVEKLISMHHDLHRERL 131
+F DS++ D +ST SS + F Q + P + +E L M L
Sbjct: 58 NFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFAQN-ELPWMSLEFLKKMMAG----NL 112
Query: 132 KVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYK 191
+ D L +A SC G CL+++TG+ A+V+VGSSL+ +Y+KC I+ A K
Sbjct: 113 RPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARK 172
Query: 192 VFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGA 251
+F+EMP RNVV+W+ ++ +AQ + + L L++ L ND++F+S++S C S
Sbjct: 173 MFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTL 232
Query: 252 LGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAG 311
L GR H +I+ F S V +SL+S+Y KCG E A VFN + K++ WN+M+
Sbjct: 233 LELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKA 292
Query: 312 YAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE 371
YAQH + I+LF+ M +KP+ ITFL V+++C H GLV+EG+ YFD M + ++P
Sbjct: 293 YAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQMKESRIEPT 352
Query: 372 LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA 409
HY+ +VD+LGRAG L+EA + I MPI P +W A
Sbjct: 353 DKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGA 390
|
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| TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 534 (193.0 bits), Expect = 7.0e-70, Sum P(2) = 7.0e-70
Identities = 120/329 (36%), Positives = 191/329 (58%)
Query: 86 QKFNH-DFTGTNSTFGSSNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTS 144
QK +H F T S+V + D+ ++++ +LI H + ++ L D +S +
Sbjct: 241 QKIHHLGFCPDQVTV--SSVLPSVGDSEMLNMGRLI--HGYVIKQGLLKDKCVISAMIDM 296
Query: 145 CGSTRNIRGGAP-YQCLAIRTGFIANVYV-GSSLITLYSKCRVIIDAYKVFEEMPVR-NV 201
G + ++ G + + + N Y+ G S L K ++ +++F+E + NV
Sbjct: 297 YGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKA---LEMFELFKEQTMELNV 353
Query: 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQ 261
VSWT+IIA AQ + LEL+R M+ + ++PN T S+L AC ALG GRS H
Sbjct: 354 VSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGF 413
Query: 262 TIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRA 321
+R+ + V ++LI MY KCG + + VFN M K++V WNS++ G++ HG A
Sbjct: 414 AVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEV 473
Query: 322 IDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK-HGLKPELDHYSCVVD 380
+ +FE +M+ R+KPD I+F ++S+C GL +EG YF M++ +G+KP L+HYSC+V+
Sbjct: 474 MSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVN 533
Query: 381 LLGRAGLLEEARDFIKQMPIYPNAVIWEA 409
LLGRAG L+EA D IK+MP P++ +W A
Sbjct: 534 LLGRAGKLQEAYDLIKEMPFEPDSCVWGA 562
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| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 551 (199.0 bits), Expect = 1.1e-69, Sum P(2) = 1.1e-69
Identities = 102/292 (34%), Positives = 181/292 (61%)
Query: 117 EKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSL 176
+K ++ + ++ D L+ AV++C + ++ G A +GF +++ ++L
Sbjct: 573 DKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNAL 632
Query: 177 ITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND 236
+TLYS+C I ++Y FE+ + ++W A+++ F Q + L ++ M ++ N+
Sbjct: 633 VTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNN 692
Query: 237 FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNN 296
FTF S + A + + + QG+ H + G+ S +V N+LISMY KCG++ +A F
Sbjct: 693 FTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLE 752
Query: 297 MHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEG 356
+ K+ VSWN++I Y++HG A+D F++M+ V+P+ +T +GV+S+C H GLV++G
Sbjct: 753 VSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKG 812
Query: 357 KVYFDSM-AKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW 407
YF+SM +++GL P+ +HY CVVD+L RAGLL A++FI++MPI P+A++W
Sbjct: 813 IAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVW 864
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| TAIR|locus:2091546 AT3G13770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 556 (200.8 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 112/288 (38%), Positives = 176/288 (61%)
Query: 120 ISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITL 179
+++ ++ R K + +T +TSC + G L ++ + ++++VGSSL+ +
Sbjct: 138 LTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDM 197
Query: 180 YSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTF 239
Y+K I +A ++FE +P R+VVS TAIIA +AQ + LE++ + + + PN T+
Sbjct: 198 YAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTY 257
Query: 240 TSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG 299
S+L+A +G L G+ AHC +R Y + NSLI MY KCGN+ A +F+NM
Sbjct: 258 ASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPE 317
Query: 300 KDIVSWNSMIAGYAQHGLAVRAIDLFEEMM-KQRVKPDAITFLGVISSCRHGGLVEEGKV 358
+ +SWN+M+ GY++HGL ++LF M ++RVKPDA+T L V+S C HG + + G
Sbjct: 318 RTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLN 377
Query: 359 YFDSMA--KHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNA 404
FD M ++G KP +HY C+VD+LGRAG ++EA +FIK+MP P A
Sbjct: 378 IFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTA 425
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZUT4 | PP192_ARATH | No assigned EC number | 0.5334 | 0.9267 | 0.962 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.XVI.2589.1 | hypothetical protein (467 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 519 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-100 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-92 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-47 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-44 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-43 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-36 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 319 bits (819), Expect = e-100
Identities = 146/421 (34%), Positives = 229/421 (54%), Gaps = 21/421 (4%)
Query: 117 EKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSL 176
+K + + + ++ + D +++ +++C ++ G LA R G I+ V V ++L
Sbjct: 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430
Query: 177 ITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND 236
I +YSKC+ I A +VF +P ++V+SWT+IIA + L +R M + L+PN
Sbjct: 431 IEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNS 489
Query: 237 FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNN 296
T + LSAC GAL G+ H +R G + N+L+ +Y +CG + A FN
Sbjct: 490 VTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN- 548
Query: 297 MHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEG 356
H KD+VSWN ++ GY HG A++LF M++ V PD +TF+ ++ +C G+V +G
Sbjct: 549 SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608
Query: 357 KVYFDSM-AKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA------ 409
YF SM K+ + P L HY+CVVDLLGRAG L EA +FI +MPI P+ +W A
Sbjct: 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACR 668
Query: 410 -----------AESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGC 458
A+ L+P ++ L NLYA WD+ ARVRK M++ GL +PGC
Sbjct: 669 IHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGC 728
Query: 459 SWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEVHEEKVDDASHKRTEP 518
SW+E+ V+ F +D+S+ ++ EI VL+ ++MK G +D+ + +
Sbjct: 729 SWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE-SSSMDEIEVSKDDI 787
Query: 519 F 519
F
Sbjct: 788 F 788
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 294 bits (754), Expect = 9e-92
Identities = 138/384 (35%), Positives = 213/384 (55%), Gaps = 23/384 (5%)
Query: 141 AVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRN 200
A GS R G C ++TG + + +V +LI +YSKC I DA VF+ MP +
Sbjct: 233 ASAGLGS---ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT 289
Query: 201 VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHC 260
V+W +++A +A + L LY MR+S + + FTF+ ++ + L + AH
Sbjct: 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349
Query: 261 QTIRMGFFSYIQVANS-LISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAV 319
IR GF I VAN+ L+ +Y K G +E+A VF+ M K+++SWN++IAGY HG
Sbjct: 350 GLIRTGFPLDI-VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGT 408
Query: 320 RAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK-HGLKPELDHYSCV 378
+A+++FE M+ + V P+ +TFL V+S+CR+ GL E+G F SM++ H +KP HY+C+
Sbjct: 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468
Query: 379 VDLLGRAGLLEEARDFIKQMPIYPNAVIWEA-----------------AESRLLLEPECA 421
++LLGR GLL+EA I++ P P +W A AE + PE
Sbjct: 469 IELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528
Query: 422 ATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLS 481
+V L NLY +AA+V + +K KGL +P C+WIE+ + F + D+ + +
Sbjct: 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSR 588
Query: 482 EILPVLDFLVDQMKTLGYVPEVHE 505
EI LD L+ ++ GYV E +E
Sbjct: 589 EIYQKLDELMKEISEYGYVAEENE 612
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Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 1e-47
Identities = 87/278 (31%), Positives = 138/278 (49%), Gaps = 1/278 (0%)
Query: 132 KVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYK 191
+ AS V +C + ++IR +GF + Y+ + ++ ++ KC ++IDA +
Sbjct: 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARR 179
Query: 192 VFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGA 251
+F+EMP RN+ SW II L+R M + TF +L A G G+
Sbjct: 180 LFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239
Query: 252 LGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAG 311
G+ HC ++ G V+ +LI MY KCG++E+A VF+ M K V+WNSM+AG
Sbjct: 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAG 299
Query: 312 YAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE 371
YA HG + A+ L+ EM V D TF +I L+E K + + G +
Sbjct: 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359
Query: 372 LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA 409
+ + +VDL + G +E+AR+ +MP N + W A
Sbjct: 360 IVANTALVDLYSKWGRMEDARNVFDRMPR-KNLISWNA 396
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 4e-44
Identities = 81/229 (35%), Positives = 124/229 (54%), Gaps = 3/229 (1%)
Query: 131 LKVDASFLS-TAVTS-CGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIID 188
L VD ++ T+V S C + R G ++TGF +V V +SLI +Y +
Sbjct: 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341
Query: 189 AYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG 248
A KVF M ++ VSWTA+I+ + + D LE Y +M + P++ T S+LSAC
Sbjct: 342 AEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401
Query: 249 SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSM 308
G L G H R G SY+ VAN+LI MY KC +++A+ VF+N+ KD++SW S+
Sbjct: 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSI 461
Query: 309 IAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGK 357
IAG + A+ F + M +KP+++T + +S+C G + GK
Sbjct: 462 IAGLRLNNRCFEALIFFRQ-MLLTLKPNSVTLIAALSACARIGALMCGK 509
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (418), Expect = 1e-43
Identities = 87/273 (31%), Positives = 140/273 (51%), Gaps = 19/273 (6%)
Query: 144 SCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVS 203
+CG ++ G +R GF +V V ++LIT+Y KC ++ A VF+ MP R+ +S
Sbjct: 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCIS 255
Query: 204 WTAIIAAFAQEWQVDMC---LELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHC 260
W A+I+ + ++ C LEL+ MR ++P+ T TS++SAC G GR H
Sbjct: 256 WNAMISGY---FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312
Query: 261 QTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVR 320
++ GF + V NSLI MY G+ EA VF+ M KD VSW +MI+GY ++GL +
Sbjct: 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDK 372
Query: 321 AIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVV- 379
A++ + M + V PD IT V+S+C G ++ G + H L S VV
Sbjct: 373 ALETYALMEQDNVSPDEITIASVLSACACLGDLDVG------VKLHELAERKGLISYVVV 426
Query: 380 -----DLLGRAGLLEEARDFIKQMPIYPNAVIW 407
++ + +++A + +P + + W
Sbjct: 427 ANALIEMYSKCKCIDKALEVFHNIP-EKDVISW 458
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 3e-36
Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 1/240 (0%)
Query: 170 VYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRN 229
V +G+++++++ + ++ A+ VF +MP R++ SW ++ +A+ D L LY M
Sbjct: 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 230 SMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEE 289
+ + P+ +TF +L C G L +GR H +R GF + V N+LI+MY KCG+V
Sbjct: 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240
Query: 290 AVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRH 349
A VF+ M +D +SWN+MI+GY ++G + ++LF M + V PD +T VIS+C
Sbjct: 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300
Query: 350 GGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA 409
G G+ + K G ++ + ++ + G EA +M +AV W A
Sbjct: 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWTA 359
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 7e-13
Identities = 66/284 (23%), Positives = 123/284 (43%), Gaps = 26/284 (9%)
Query: 145 CGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVR----N 200
C S+++I G L G A+ + ++LI+ +K + ++VF EM N
Sbjct: 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN 506
Query: 201 VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQG----- 255
V ++ A+I A+ QV Y +MR+ ++P+ F +++SAC SGA+ +
Sbjct: 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566
Query: 256 -RSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVS----WNSMIA 310
A I + +L+ G V+ A V+ +H +I + +
Sbjct: 567 EMKAETHPIDPDHITV----GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622
Query: 311 GYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKP 370
+Q G A+ ++++M K+ VKPD + F ++ H G +++ K G+K
Sbjct: 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682
Query: 371 ELDHYSCVVDLLGRAGLLEEARDF---IKQMPIYP-----NAVI 406
YS ++ A ++A + IK + + P NA+I
Sbjct: 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI 726
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 4e-11
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 300 KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSC 347
D+V++N++I GY + G A+ LF EM K+ +KP+ T+ +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 3e-10
Identities = 10/47 (21%), Positives = 29/47 (61%)
Query: 200 NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSAC 246
+VV++ +I + ++ +V+ L+L+ M+ ++PN +T++ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 9e-09
Identities = 44/221 (19%), Positives = 100/221 (45%), Gaps = 6/221 (2%)
Query: 184 RVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSIL 243
R + +A++ + + + ++ +++ A +D L + R+++ + L+ + +T+++
Sbjct: 420 RAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI 479
Query: 244 SACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDI- 302
S C SG + + + G + + +LI + G V +A + M K++
Sbjct: 480 STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539
Query: 303 ---VSWNSMIAGYAQHGLAVRAIDLFEEMM--KQRVKPDAITFLGVISSCRHGGLVEEGK 357
V +N++I+ Q G RA D+ EM + PD IT ++ +C + G V+ K
Sbjct: 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599
Query: 358 VYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398
+ + ++ +K + Y+ V+ + G + A M
Sbjct: 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 8e-08
Identities = 52/254 (20%), Positives = 111/254 (43%), Gaps = 25/254 (9%)
Query: 172 VGSSLITLYSKCRVIIDAYKVFEEM-----PVR-NVVSWTAIIAAFAQEWQVDMCLELYR 225
V ++LI+ + + A+ V EM P+ + ++ A++ A A QVD E+Y+
Sbjct: 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603
Query: 226 MMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMG------FFSYIQVANSLIS 279
M+ ++ +T +++C+ G S + + G FFS +L+
Sbjct: 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS------ALVD 657
Query: 280 MYCKCGNVEEAVYVFNNMHGKDI----VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKP 335
+ G++++A + + + I VS++S++ + +A++L+E++ +++P
Sbjct: 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717
Query: 336 DAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFI 395
T +I++ G + + M + GL P YS ++ R + D +
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777
Query: 396 KQMP---IYPNAVI 406
Q I PN V+
Sbjct: 778 SQAKEDGIKPNLVM 791
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 2e-07
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 275 NSLISMYCKCGNVEEAVYVFNNMHGK----DIVSWNSMIAGYAQ 314
N+LI YCK G VEEA+ +FN M + ++ +++ +I G +
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDA 337
V++N++I G + G A++LF+EM ++ ++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-06
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRV 333
V++NS+I+GY + G A++LF+EM ++ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 275 NSLISMYCKCGNVEEAVYVFNNMHGKDI 302
NSLIS YCK G +EEA+ +F M K +
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 2e-04
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 275 NSLISMYCKCGNVEEAVYVFNNM 297
N+LI C+ G V+EAV + + M
Sbjct: 11 NTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 275 NSLISMYCKCGNVEEAVYVFNNMHGKDIV 303
N+LI CK G VEEA+ +F M + I
Sbjct: 4 NTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 3e-04
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 302 IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKP 335
+ ++N+++ A+ G A+ + EEM +KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 4e-04
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 301 DIVSWNSMIAGYAQHGLAVRAIDLFEEM 328
D+V++N++I G + G A++L +EM
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.003
Identities = 6/29 (20%), Positives = 19/29 (65%)
Query: 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNS 230
V++ ++I+ + + +++ LEL++ M+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 519 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.92 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.78 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.76 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.74 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.74 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.69 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.65 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.62 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.59 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.59 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.57 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.54 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.5 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.48 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.46 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.45 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.44 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.43 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.43 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.42 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.41 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.4 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.38 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.35 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.32 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.31 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.3 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.29 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.23 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.21 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.21 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.2 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.17 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.16 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.15 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.12 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.11 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.11 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.09 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.08 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.08 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.07 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.05 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.01 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.99 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.95 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.94 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.94 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.9 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.88 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.86 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.85 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.84 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.79 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.79 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.78 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.74 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.72 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.71 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.71 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.62 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.6 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.6 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.58 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.57 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.51 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.51 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.48 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.43 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.4 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.31 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.31 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.3 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.3 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.28 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.28 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.28 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.25 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.23 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.22 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.2 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.19 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.19 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.18 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.17 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.16 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.15 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.15 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.15 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.13 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.13 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.13 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.13 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.11 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.11 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.1 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.1 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.08 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.08 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.07 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.07 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.07 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.04 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.03 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.01 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.01 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.0 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.98 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.96 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.95 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 97.92 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.85 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.85 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.82 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.78 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.77 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.76 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.75 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.75 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.75 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.74 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.74 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.7 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.69 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.67 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.63 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.62 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.62 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.59 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.47 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.46 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.42 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.4 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.35 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.27 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.25 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.25 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.23 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.21 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.18 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.16 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.08 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.07 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.04 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.03 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.03 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.0 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 96.98 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.96 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.9 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.89 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.89 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.84 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.83 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.82 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.81 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.81 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.78 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.77 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.73 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.71 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 96.68 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.64 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.59 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.5 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.46 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.44 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.38 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.36 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.36 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.36 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.29 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.23 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.22 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.19 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.18 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.18 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.18 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.14 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.03 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.03 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.0 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.88 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 95.84 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.78 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.77 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.73 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.65 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.57 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.55 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.52 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.47 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.37 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.35 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.25 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.22 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.18 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.16 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.05 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.0 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 94.86 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.85 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.8 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.56 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.55 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.42 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.37 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.28 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.26 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.22 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.21 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.19 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.17 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.17 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.12 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 93.93 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.47 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.43 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.36 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.23 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.18 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.16 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.95 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.9 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.8 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.69 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.66 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.38 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 91.99 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.97 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 91.97 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.95 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.92 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.82 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.76 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.05 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.97 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 90.75 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.27 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 90.17 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.1 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 89.95 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 89.89 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 89.31 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 89.12 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 89.08 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 88.99 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 88.58 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 88.3 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.13 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.05 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.92 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 87.46 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.43 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.22 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.7 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.65 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 86.47 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.32 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.28 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.19 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.83 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 85.29 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.26 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.06 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.03 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 84.88 | |
| PF09477 | 116 | Type_III_YscG: Bacterial type II secretion system | 84.67 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 84.58 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.43 | |
| PF14669 | 233 | Asp_Glu_race_2: Putative aspartate racemase | 83.96 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 83.81 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.96 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 82.59 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 81.56 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 81.29 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 80.55 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 80.47 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 80.1 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-67 Score=551.91 Aligned_cols=471 Identities=30% Similarity=0.534 Sum_probs=434.5
Q ss_pred cccccceeecccchhhhhhccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCC
Q 044422 20 SLKTLSIIYRSFCSQKLKQISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTF 99 (519)
Q Consensus 20 ~~~~y~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (519)
+..||+.++++++ +.++++.|.+++..|. ..+..|+..+++.++..+.+. +....+..+|+.+..++...
T Consensus 122 ~~~t~~~ll~a~~--------~~~~~~~a~~l~~~m~-~~g~~~~~~~~n~Li~~y~k~-g~~~~A~~lf~~m~~~~~~t 191 (697)
T PLN03081 122 PASTYDALVEACI--------ALKSIRCVKAVYWHVE-SSGFEPDQYMMNRVLLMHVKC-GMLIDARRLFDEMPERNLAS 191 (697)
T ss_pred CHHHHHHHHHHHH--------hCCCHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHhcC-CCHHHHHHHHhcCCCCCeee
Confidence 4455666666655 5666666677766665 356667777777777777665 45667888999998766555
Q ss_pred chhhhhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHH
Q 044422 100 GSSNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITL 179 (519)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 179 (519)
+ +.+...+...+ ++++|+++|++|.+.|+.||..||+.++.+|+..|+...+.+++..+.+.|+.||..+||+||++
T Consensus 192 ~-n~li~~~~~~g--~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~ 268 (697)
T PLN03081 192 W-GTIIGGLVDAG--NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDM 268 (697)
T ss_pred H-HHHHHHHHHCc--CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHH
Confidence 4 55666666654 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHH
Q 044422 180 YSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAH 259 (519)
Q Consensus 180 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 259 (519)
|++.|++++|.++|++|.++|+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++
T Consensus 269 y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 269 YSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred HHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 044422 260 CQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAIT 339 (519)
Q Consensus 260 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 339 (519)
..|.+.|+.|+..+|++|+++|+++|++++|.++|++|.++|..+||+||.+|++.|+.++|.++|++|.+.|+.||..|
T Consensus 349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T 428 (697)
T PLN03081 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT 428 (697)
T ss_pred HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH--------
Q 044422 340 FLGVISSCRHGGLVEEGKVYFDSMAK-HGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAA-------- 410 (519)
Q Consensus 340 ~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~-------- 410 (519)
|+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++|+..|+..+|+.+
T Consensus 429 ~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 429 FLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHK 508 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999985 799999999999999999999999999999999999999999654
Q ss_pred ---------HHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCCeeEEEEEcCEEEEEEecCCcCcChh
Q 044422 411 ---------ESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLS 481 (519)
Q Consensus 411 ---------~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (519)
++.+++.|.+..+|..|+.+|++.|++++|.++++.|++.|+.+.++.+|+.+.+.+|.|..++..|+...
T Consensus 509 ~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~ 588 (697)
T PLN03081 509 NLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSR 588 (697)
T ss_pred CcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHH
Confidence 44557889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCCCCc
Q 044422 482 EILPVLDFLVDQMKTLGYVPEV 503 (519)
Q Consensus 482 ~~~~~~~~l~~~m~~~g~~p~~ 503 (519)
+++..++++..+|++.||.||.
T Consensus 589 ~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 589 EIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred HHHHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999996
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-65 Score=550.10 Aligned_cols=471 Identities=32% Similarity=0.571 Sum_probs=434.1
Q ss_pred hcccccceeecccchhhhhhccCccchhhHHhhhhhcCCCCCCCchHH--------------------------------
Q 044422 19 QSLKTLSIIYRSFCSQKLKQISSSKSLHKALRVLDIISPRTRDSTKTE-------------------------------- 66 (519)
Q Consensus 19 ~~~~~y~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------------------------- 66 (519)
++..+||++|.+++ +.|++++|+++|+.|.. .+..|+..
T Consensus 251 ~d~~s~n~li~~~~--------~~g~~~eAl~lf~~M~~-~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 321 (857)
T PLN03077 251 RDCISWNAMISGYF--------ENGECLEGLELFFTMRE-LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321 (857)
T ss_pred CCcchhHHHHHHHH--------hCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence 45677888888888 78888888888887763 44455544
Q ss_pred ---HHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHH
Q 044422 67 ---VHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVT 143 (519)
Q Consensus 67 ---~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 143 (519)
+|+.++..+++. +....+.++|+.+..++...| +.+...+...+ ++++|+++|++|.+.|+.||..||+.++.
T Consensus 322 d~~~~n~Li~~y~k~-g~~~~A~~vf~~m~~~d~~s~-n~li~~~~~~g--~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~ 397 (857)
T PLN03077 322 DVSVCNSLIQMYLSL-GSWGEAEKVFSRMETKDAVSW-TAMISGYEKNG--LPDKALETYALMEQDNVSPDEITIASVLS 397 (857)
T ss_pred chHHHHHHHHHHHhc-CCHHHHHHHHhhCCCCCeeeH-HHHHHHHHhCC--CHHHHHHHHHHHHHhCCCCCceeHHHHHH
Confidence 455555555444 345678888999887765554 45556666655 89999999999999999999999999999
Q ss_pred HHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 044422 144 SCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLEL 223 (519)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~ 223 (519)
+|++.|+++.|.++++.|.+.|+.|+..+||+||++|++.|++++|.++|++|.++|..+||++|.+|++.|+.++|+.+
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 044422 224 YRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIV 303 (519)
Q Consensus 224 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 303 (519)
|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++||++|+++|++++|.++|+.+ .+|..
T Consensus 478 f~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~ 555 (857)
T PLN03077 478 FRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVV 555 (857)
T ss_pred HHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChh
Confidence 999976 6899999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-HcCCCcCHHHHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA-KHGLKPELDHYSCVVDLL 382 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~ 382 (519)
+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|. +.|+.|+..+|++++.+|
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 789999999999999999
Q ss_pred HHcCCHHHHHHHHHhCCCCCCHHHHHH-----------------HHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHH
Q 044422 383 GRAGLLEEARDFIKQMPIYPNAVIWEA-----------------AESRLLLEPECAATHVQLANLYAGVRCWDQAARVRK 445 (519)
Q Consensus 383 ~~~g~~~~A~~~~~~~~~~p~~~~~~~-----------------~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~ 445 (519)
++.|++++|.+++++|+++||..+|++ .+++++++|.++..|..|.+.|+..|+|++|.++.+
T Consensus 636 ~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~ 715 (857)
T PLN03077 636 GRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRK 715 (857)
T ss_pred HhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHH
Confidence 999999999999999999999999944 346678999999999999999999999999999999
Q ss_pred HHHHCCCCCCCeeEEEEEcCEEEEEEecCCcCcChhhHHHHHHHHHHHHHHcCCCCCcc
Q 044422 446 LMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEVH 504 (519)
Q Consensus 446 ~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~ 504 (519)
.|++.|++++++.||+.+.+.+|.|..++..||+..+++..++++..+|++.||.||..
T Consensus 716 ~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 716 TMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSES 774 (857)
T ss_pred HHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999963
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-57 Score=481.99 Aligned_cols=453 Identities=14% Similarity=0.222 Sum_probs=397.3
Q ss_pred hcccccceeecccchhhhhhccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCC
Q 044422 19 QSLKTLSIIYRSFCSQKLKQISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNST 98 (519)
Q Consensus 19 ~~~~~y~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (519)
+....|..++..+| +.|++++|+++|+.|....-..++...++.++..+... +....+..++..+..++.
T Consensus 368 ~~~~~~~~~y~~l~--------r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~-g~~~eAl~lf~~M~~pd~- 437 (1060)
T PLN03218 368 RKSPEYIDAYNRLL--------RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ-RAVKEAFRFAKLIRNPTL- 437 (1060)
T ss_pred CCchHHHHHHHHHH--------HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC-CCHHHHHHHHHHcCCCCH-
Confidence 34556667777777 89999999999999986555667777888888887665 456677888888887333
Q ss_pred CchhhhhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHH
Q 044422 99 FGSSNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLIT 178 (519)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (519)
...+.++..+...+ +++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.
T Consensus 438 ~Tyn~LL~a~~k~g--~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~ 515 (1060)
T PLN03218 438 STFNMLMSVCASSQ--DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515 (1060)
T ss_pred HHHHHHHHHHHhCc--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33345556565554 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHccCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCCc
Q 044422 179 LYSKCRVIIDAYKVFEEMP----VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRN--SMLEPNDFTFTSILSACTGSGAL 252 (519)
Q Consensus 179 ~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~ 252 (519)
+|++.|++++|.++|++|. .||..+||.+|.+|++.|++++|.++|++|.. .|+.||..||+++|.+|++.|++
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 9999999999999999996 59999999999999999999999999999976 68999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 044422 253 GQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG----KDIVSWNSMIAGYAQHGLAVRAIDLFEEM 328 (519)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m 328 (519)
++|.++|+.|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999974 79999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHH
Q 044422 329 MKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM---PIYPNAV 405 (519)
Q Consensus 329 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~ 405 (519)
.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++| ++.||..
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 6889998
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCCeeEEEEEcCE-------------EEEEEe
Q 044422 406 IWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNV-------------VYRFRA 472 (519)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~-------------~~~~~~ 472 (519)
+|+. |+.+|++.|++++|.+++++|.+.|+.|+..++...+.-. +..+.
T Consensus 756 Ty~s-----------------LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~- 817 (1060)
T PLN03218 756 TYSI-----------------LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFD- 817 (1060)
T ss_pred HHHH-----------------HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhh-
Confidence 8877 5999999999999999999999999999985543322100 00010
Q ss_pred cCCcCcC-hhhHHHHHHHHHHHHHHcCCCCCc
Q 044422 473 EDKSNTR-LSEILPVLDFLVDQMKTLGYVPEV 503 (519)
Q Consensus 473 ~~~~~~~-~~~~~~~~~~l~~~m~~~g~~p~~ 503 (519)
..+.. ...-....-.++++|.+.|+.||.
T Consensus 818 --~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 818 --SGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred --ccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 00000 011123455688999999999996
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-57 Score=486.73 Aligned_cols=461 Identities=22% Similarity=0.355 Sum_probs=401.3
Q ss_pred hhhcccccceeecccchhhhhhccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHH---------------------
Q 044422 17 ALQSLKTLSIIYRSFCSQKLKQISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDF--------------------- 75 (519)
Q Consensus 17 ~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~--------------------- 75 (519)
...+..+++.+++++| +.|++++|..+|+.|.+ .+..++...|..++..+
T Consensus 47 ~~~~~~~~n~~i~~l~--------~~g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 117 (857)
T PLN03077 47 SSSSTHDSNSQLRALC--------SHGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP 117 (857)
T ss_pred cccchhhHHHHHHHHH--------hCCCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCC
Confidence 3445666788888888 89999999999999974 55556666665555444
Q ss_pred --------------hhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHH
Q 044422 76 --------------LQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTA 141 (519)
Q Consensus 76 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 141 (519)
.+. +....+..+|+.+..++...+ +.++..+...+ ++++|+++|++|.+.|+.||..||+.+
T Consensus 118 ~~~~~~~n~li~~~~~~-g~~~~A~~~f~~m~~~d~~~~-n~li~~~~~~g--~~~~A~~~f~~M~~~g~~Pd~~t~~~l 193 (857)
T PLN03077 118 SLGVRLGNAMLSMFVRF-GELVHAWYVFGKMPERDLFSW-NVLVGGYAKAG--YFDEALCLYHRMLWAGVRPDVYTFPCV 193 (857)
T ss_pred CCCchHHHHHHHHHHhC-CChHHHHHHHhcCCCCCeeEH-HHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 333 334567778888887655544 44555555554 899999999999999999999999999
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHH
Q 044422 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCL 221 (519)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~ 221 (519)
+++|+..+++..+.+++..|.+.|+.||..+||+||.+|++.|+++.|.++|++|+++|..+||++|.+|++.|++++|+
T Consensus 194 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl 273 (857)
T PLN03077 194 LRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGL 273 (857)
T ss_pred HHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 044422 222 ELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKD 301 (519)
Q Consensus 222 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 301 (519)
++|.+|...|+.||..||+.++.+|++.|+.+.|.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.+||
T Consensus 274 ~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d 353 (857)
T PLN03077 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD 353 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 044422 302 IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDL 381 (519)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 381 (519)
..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|++|+.+
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhh----------------------------------------------
Q 044422 382 LGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLL---------------------------------------------- 415 (519)
Q Consensus 382 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~---------------------------------------------- 415 (519)
|+++|++++|.++|++|. .+|..+|+.+..++.
T Consensus 434 y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred HHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 999999999999999985 455555544332221
Q ss_pred ------------------------------------cCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCCeeE
Q 044422 416 ------------------------------------LEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCS 459 (519)
Q Consensus 416 ------------------------------------~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 459 (519)
..+.+..+|+.++.+|++.|+.++|.++|++|.+.|+.||..++
T Consensus 513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Confidence 11456678999999999999999999999999999999999665
Q ss_pred EEEEcCEEEEEEecCCcCcChhhHHHHHHHHHHHHH-HcCCCCCc
Q 044422 460 WIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMK-TLGYVPEV 503 (519)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~-~~g~~p~~ 503 (519)
...+....+ ... .+...++++.|. +.|+.|+.
T Consensus 593 ~~ll~a~~~--------~g~----v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 593 ISLLCACSR--------SGM----VTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHHhh--------cCh----HHHHHHHHHHHHHHhCCCCch
Confidence 543332221 112 344555778888 78999986
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-56 Score=470.17 Aligned_cols=348 Identities=18% Similarity=0.278 Sum_probs=229.7
Q ss_pred hcccccceeecccchhhhhhccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCC
Q 044422 19 QSLKTLSIIYRSFCSQKLKQISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNST 98 (519)
Q Consensus 19 ~~~~~y~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (519)
++..||+.+++++| +.|++++|.++|+.|. ..+..|+..+|+.++.++++.+
T Consensus 435 pd~~Tyn~LL~a~~--------k~g~~e~A~~lf~~M~-~~Gl~pD~~tynsLI~~y~k~G------------------- 486 (1060)
T PLN03218 435 PTLSTFNMLMSVCA--------SSQDIDGALRVLRLVQ-EAGLKADCKLYTTLISTCAKSG------------------- 486 (1060)
T ss_pred CCHHHHHHHHHHHH--------hCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCc-------------------
Confidence 44455555555555 5555555555555554 2445555555555555555443
Q ss_pred CchhhhhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHH
Q 044422 99 FGSSNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLIT 178 (519)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (519)
+++.|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.
T Consensus 487 ----------------~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~ 550 (1060)
T PLN03218 487 ----------------KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550 (1060)
T ss_pred ----------------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhCCCHHHHHHHHccCC------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCc
Q 044422 179 LYSKCRVIIDAYKVFEEMP------VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGAL 252 (519)
Q Consensus 179 ~~~~~g~~~~A~~~~~~m~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 252 (519)
+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++
T Consensus 551 a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~ 630 (1060)
T PLN03218 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Confidence 6666666666666666663 3566666666666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 044422 253 GQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG----KDIVSWNSMIAGYAQHGLAVRAIDLFEEM 328 (519)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m 328 (519)
++|.++|+.|.+.|+.||..+|+++|++|++.|++++|.++|+.|.+ ||..+|+++|.+|++.|++++|.++|++|
T Consensus 631 deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666653 56666666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHH
Q 044422 329 MKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM---PIYPNAV 405 (519)
Q Consensus 329 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~ 405 (519)
.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.| ++.||..
T Consensus 711 ~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~ 790 (1060)
T PLN03218 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV 790 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666 5666666
Q ss_pred HHHHH
Q 044422 406 IWEAA 410 (519)
Q Consensus 406 ~~~~~ 410 (519)
+|+.+
T Consensus 791 tynsL 795 (1060)
T PLN03218 791 MCRCI 795 (1060)
T ss_pred HHHHH
Confidence 66554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-52 Score=436.42 Aligned_cols=338 Identities=28% Similarity=0.456 Sum_probs=317.2
Q ss_pred hhhhhhhcCCccCHHHHHHHHHHHhHCC-CCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 044422 103 NVFDQLLDTPVVDVEKLISMHHDLHRER-LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYS 181 (519)
Q Consensus 103 ~~~~~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 181 (519)
.++..+...+ ++++|+++|++|...+ +.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+||.++++|+
T Consensus 92 ~~i~~l~~~g--~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 92 SQIEKLVACG--RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV 169 (697)
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHh
Confidence 3444444443 8999999999999865 789999999999999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHH
Q 044422 182 KCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQ 261 (519)
Q Consensus 182 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 261 (519)
+.|+++.|.++|++|.+||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.+++..
T Consensus 170 k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~ 249 (697)
T PLN03081 170 KCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249 (697)
T ss_pred cCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 044422 262 TIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFL 341 (519)
Q Consensus 262 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 341 (519)
+.+.|+.||..+|++||++|+++|++++|.++|+.|.++|+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 250 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~ 329 (697)
T PLN03081 250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS 329 (697)
T ss_pred HHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCc
Q 044422 342 GVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECA 421 (519)
Q Consensus 342 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 421 (519)
.++.+|++.|+++.|.++++.|.+.|+.||..+|++|+.+|+++|++++|.++|++|. +||..+|+.
T Consensus 330 ~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~------------ 396 (697)
T PLN03081 330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNA------------ 396 (697)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHH------------
Confidence 9999999999999999999999999999999999999999999999999999999996 577777766
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCCeeEE
Q 044422 422 ATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSW 460 (519)
Q Consensus 422 ~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 460 (519)
|+.+|++.|+.++|.++|++|.+.|+.||..++.
T Consensus 397 -----lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 430 (697)
T PLN03081 397 -----LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL 430 (697)
T ss_pred -----HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5777777777777777777777777777775543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-21 Score=209.71 Aligned_cols=402 Identities=12% Similarity=0.077 Sum_probs=303.3
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHH
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLI 120 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 120 (519)
..|++++|..+++.+... .+.+...+..+...+... +....+...+.......+................+++++|.
T Consensus 443 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGK-GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhC-CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 567777777777666532 223334455554444444 34444555555444333332222222222222334788888
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP--- 197 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--- 197 (519)
+.|+.+.+.+ +.+..++..+...+.+.|+.++|..++..+.+.+ +.+...+..++..|.+.|++++|..+++.+.
T Consensus 520 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 520 QRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 8888887754 3467778888888888888888888888887764 4566677788888888888888888888875
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHH
Q 044422 198 VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSL 277 (519)
Q Consensus 198 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 277 (519)
+.+...|..+..++...|++++|...|+++.+.. +.+...+..+..++.+.|++++|...++.+.+.. +.+..++..+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 3466788888889999999999999998887754 3456678888888888999999999998888764 5567888888
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 044422 278 ISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVE 354 (519)
Q Consensus 278 i~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 354 (519)
...+...|++++|.++++.+.+ .+...+..+...+...|++++|...|+.+...+ |+..++..+..++.+.|+++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence 9999999999999999988865 356678888888999999999999999988764 45567778888999999999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHH----------------HHHHHhhhc
Q 044422 355 EGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPN-AVIW----------------EAAESRLLL 416 (519)
Q Consensus 355 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~----------------~~~~~~~~~ 416 (519)
+|.+.++.+.+.. +.+...+..+...|...|++++|...|+++ ...|+ ...+ ..+++++.+
T Consensus 754 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~ 832 (899)
T TIGR02917 754 EAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Confidence 9999999988753 557788888999999999999999999987 23333 2222 456778889
Q ss_pred CCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 044422 417 EPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGL 452 (519)
Q Consensus 417 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~ 452 (519)
.|.++..+..++.++...|++++|.++++++.+.+.
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999998764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-21 Score=213.45 Aligned_cols=397 Identities=9% Similarity=-0.025 Sum_probs=318.2
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhh--hhhhhhcCCccCHHH
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSN--VFDQLLDTPVVDVEK 118 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 118 (519)
..|++++|...|+...+..+ .....+..+...+... +....+...+.......+...... +...+.. .++.++
T Consensus 477 ~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ 551 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIEP--DFFPAAANLARIDIQE-GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLR--TGNEEE 551 (899)
T ss_pred hCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH--cCCHHH
Confidence 88999999999998764322 2333444444444433 344455555555543333322211 2222222 448999
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC-
Q 044422 119 LISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP- 197 (519)
Q Consensus 119 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 197 (519)
|...|+++.+.+ +.+...+..+...+...|+++.|..+++.+.+.. +.+..+|..+..++.+.|++++|...|+.+.
T Consensus 552 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 552 AVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 4467778889999999999999999999987754 6677899999999999999999999999875
Q ss_pred --CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHH
Q 044422 198 --VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVAN 275 (519)
Q Consensus 198 --~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (519)
+.+...+..+..++.+.|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.+.+.+ +.+...+.
T Consensus 630 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 707 (899)
T TIGR02917 630 LQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFE 707 (899)
T ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHH
Confidence 3466788999999999999999999999998764 4467889999999999999999999999998876 66778889
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHG--KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLV 353 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 353 (519)
.+...+.+.|++++|...|+.+.+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|...|+.
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 999999999999999999998764 556778888999999999999999999998864 44778888899999999999
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HH-----------------HHHHHhh
Q 044422 354 EEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNAV-IW-----------------EAAESRL 414 (519)
Q Consensus 354 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~-----------------~~~~~~~ 414 (519)
++|...|+++.+.. +.+...++.+...+...|+ .+|...++++ ...|+.. .+ ..+++++
T Consensus 787 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 787 DKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999764 5578889999999999999 8899998876 3333321 11 5567888
Q ss_pred hcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 415 LLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 415 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
+..|.++.++..++.+|.+.|++++|.+++++|.+
T Consensus 865 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 865 NIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-19 Score=179.14 Aligned_cols=293 Identities=11% Similarity=0.063 Sum_probs=239.1
Q ss_pred HHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC-CC------hhHHHHHHHHHHhcCC
Q 044422 144 SCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV-RN------VVSWTAIIAAFAQEWQ 216 (519)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~------~~~~~~li~~~~~~~~ 216 (519)
.+...|+++.|...|..+.+.+ +.+..++..+...+.+.|++++|..+++.+.. ++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4457789999999999998864 44566888899999999999999999988763 21 2467888899999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhcCCHHHHHH
Q 044422 217 VDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSY----IQVANSLISMYCKCGNVEEAVY 292 (519)
Q Consensus 217 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~ 292 (519)
+++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999998753 45677889999999999999999999999887653322 2345677888899999999999
Q ss_pred HHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 044422 293 VFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK 369 (519)
Q Consensus 293 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 369 (519)
.|+++.+ | +...+..+...+.+.|++++|.++++++.+.+......++..+..+|...|++++|...++++.+. .
T Consensus 202 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 202 LLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 9998764 3 456788888999999999999999999987643333567888999999999999999999999885 4
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhc---cCCHHHHHHHHH
Q 044422 370 PELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNAVIWEAAESRLLLEPECAATHVQLANLYAG---VRCWDQAARVRK 445 (519)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~---~g~~~~A~~~~~ 445 (519)
|+...+..+...+.+.|++++|..+++++ ...|+...+.. ++..+.. .|+.++++.+++
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~-----------------l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHR-----------------LLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHH-----------------HHHHhhhccCCccchhHHHHHH
Confidence 77777788999999999999999999875 44566665554 4555543 569999999999
Q ss_pred HHHHCCCCCCCe
Q 044422 446 LMKDKGLKTNPG 457 (519)
Q Consensus 446 ~m~~~g~~~~~~ 457 (519)
+|.+.++.|+|.
T Consensus 343 ~~~~~~~~~~p~ 354 (389)
T PRK11788 343 DLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhCCCC
Confidence 999999999995
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-18 Score=166.70 Aligned_cols=280 Identities=9% Similarity=0.106 Sum_probs=237.6
Q ss_pred ccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCHHHH
Q 044422 113 VVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIAN---VYVGSSLITLYSKCRVIIDA 189 (519)
Q Consensus 113 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A 189 (519)
.+++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+.+.+..++ ..++..+...|.+.|++++|
T Consensus 48 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred cCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 348999999999999864 34667888999999999999999999999987643222 35688999999999999999
Q ss_pred HHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCchHHHHHHHHH
Q 044422 190 YKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND----FTFTSILSACTGSGALGQGRSAHCQT 262 (519)
Q Consensus 190 ~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~ 262 (519)
..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...++++
T Consensus 127 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 127 EELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999974 56778999999999999999999999999886543322 24566778889999999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 044422 263 IRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--KD--IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAI 338 (519)
Q Consensus 263 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 338 (519)
.+.. +.+...+..+...|.+.|++++|.++|+++.+ |+ ..+++.++.+|.+.|++++|...++++.+. .|+..
T Consensus 207 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~ 283 (389)
T PRK11788 207 LAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGAD 283 (389)
T ss_pred HhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCch
Confidence 8864 45567888899999999999999999999874 33 356788999999999999999999999886 46666
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHH---cCCHHHHHHHHHhC
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGR---AGLLEEARDFIKQM 398 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~ 398 (519)
.+..+...+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++
T Consensus 284 ~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 284 LLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 7788999999999999999999999874 5899999988888775 55899999999877
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-15 Score=155.58 Aligned_cols=277 Identities=11% Similarity=0.026 Sum_probs=214.0
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
+++.|++.|+.+.+.. +.+...+..+...+.+.|+++.|...++.+.+.. +.+...+..+...+...|++++|...++
T Consensus 91 ~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 91 QPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 8899999999998763 3356677778888889999999999999888763 4456788888889999999999999888
Q ss_pred cCC--CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcH
Q 044422 195 EMP--VR-NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYI 271 (519)
Q Consensus 195 ~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 271 (519)
.+. .| +...+..+ ..+...|++++|...++.+......++...+..+..++...|++++|...++.+.+.. +.+.
T Consensus 169 ~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~ 246 (656)
T PRK15174 169 TQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGA 246 (656)
T ss_pred HHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence 764 23 33334333 3478889999999999888776433445555566778888999999999999888765 5567
Q ss_pred HHHHHHHHHHHhcCCHHH----HHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044422 272 QVANSLISMYCKCGNVEE----AVYVFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVI 344 (519)
Q Consensus 272 ~~~~~li~~~~~~~~~~~----a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 344 (519)
..+..+...|...|++++ |...|+...+ | +...+..+...+.+.|++++|...+++..+... -+...+..+.
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La 325 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 788888999999999885 7888887764 3 556888888899999999999999998887532 2455666777
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 345 SSCRHGGLVEEGKVYFDSMAKHGLKPELD-HYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 345 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
.++...|++++|...++.+.+. .|+.. .+..+..++...|+.++|...|++.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888999999999999988874 35443 3344567788899999999988875
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-15 Score=156.71 Aligned_cols=332 Identities=13% Similarity=0.042 Sum_probs=263.7
Q ss_pred cCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 044422 114 VDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVF 193 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 193 (519)
+++++|+..|++..+ +.|+...|..+..++...|+++.|...+...++.. +.+...|..+..+|...|++++|+..|
T Consensus 141 ~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 141 KDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDL 217 (615)
T ss_pred CCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 489999999999886 46788889999999999999999999999998764 446678899999999999999997655
Q ss_pred ccCC---------------------------------CCChhHHHHHHHH------------------------------
Q 044422 194 EEMP---------------------------------VRNVVSWTAIIAA------------------------------ 210 (519)
Q Consensus 194 ~~m~---------------------------------~~~~~~~~~li~~------------------------------ 210 (519)
.... ..+...+..+...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (615)
T TIGR00990 218 TASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQL 297 (615)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHH
Confidence 3321 0111111111000
Q ss_pred H------HhcCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 044422 211 F------AQEWQVDMCLELYRMMRNSM-LEP-NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYC 282 (519)
Q Consensus 211 ~------~~~~~~~~a~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (519)
. ...+++++|.+.|++....+ ..| +...+..+...+...|++++|...++...+.. +.....|..+...+.
T Consensus 298 ~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~ 376 (615)
T TIGR00990 298 GLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNL 376 (615)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHH
Confidence 0 11257889999999988764 234 34577888888899999999999999998864 444678889999999
Q ss_pred hcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 044422 283 KCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVY 359 (519)
Q Consensus 283 ~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 359 (519)
..|++++|...|+...+ .+...|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...
T Consensus 377 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~ 455 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMAT 455 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999997754 357889999999999999999999999998764 23566777788889999999999999
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-------H------------------HHHHHHHh
Q 044422 360 FDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNA-------V------------------IWEAAESR 413 (519)
Q Consensus 360 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-------~------------------~~~~~~~~ 413 (519)
+++..+.. +-+...++.+...+...|++++|.+.|++. .+.|+. . ....++++
T Consensus 456 ~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 456 FRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99998742 345778899999999999999999999885 333321 0 01346777
Q ss_pred hhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 414 LLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 414 ~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
+.++|++..++..|+.++...|++++|++.|++..+..
T Consensus 535 l~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 535 LIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999987653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-15 Score=156.60 Aligned_cols=316 Identities=9% Similarity=-0.017 Sum_probs=253.1
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
++++|+.+++........ +...+..++.++...|+++.|...++.+.+.. +.+...+..+...+...|++++|...++
T Consensus 57 ~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~ 134 (656)
T PRK15174 57 ETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAE 134 (656)
T ss_pred CcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999999999886544 34445555567778999999999999998874 5567788999999999999999999999
Q ss_pred cCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcH
Q 044422 195 EMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYI 271 (519)
Q Consensus 195 ~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 271 (519)
+... .+...+..+..++...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+..-.++.
T Consensus 135 ~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~ 212 (656)
T PRK15174 135 QAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQ 212 (656)
T ss_pred HHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcch
Confidence 9863 45678889999999999999999999988765422 23333333 4478899999999999998776533445
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCCHHHHHHHH
Q 044422 272 QVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVR----AIDLFEEMMKQRVKPDAITFLGVI 344 (519)
Q Consensus 272 ~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~t~~~ll 344 (519)
..+..+..++.+.|++++|...++...+ .+...+..+...+...|++++ |...|++..+.. +.+...+..+.
T Consensus 213 ~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg 291 (656)
T PRK15174 213 ESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYA 291 (656)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 5566667889999999999999998765 356788889999999999986 899999998753 23567888899
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhH
Q 044422 345 SSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATH 424 (519)
Q Consensus 345 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 424 (519)
..+...|++++|...+++..+.. +.+...+..+...|.+.|++++|...++.+ +..+|.+...+
T Consensus 292 ~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~a---------------l~~~P~~~~~~ 355 (656)
T PRK15174 292 DALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQL---------------AREKGVTSKWN 355 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------HHhCccchHHH
Confidence 99999999999999999999753 334566777899999999999999998766 23344444444
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 425 VQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 425 ~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
..+..++...|++++|...|++..+..
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 456788999999999999999987653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-16 Score=150.36 Aligned_cols=340 Identities=13% Similarity=0.162 Sum_probs=278.5
Q ss_pred hhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHH-HHHHHHHHHh
Q 044422 104 VFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYV-GSSLITLYSK 182 (519)
Q Consensus 104 ~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~ 182 (519)
+-+.+..++ ++++|+.+++.+.+...+ ....|..+..++...|+.+.|.+.|...++. .|+... .+.+....-.
T Consensus 122 ~aN~~kerg--~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 122 LANILKERG--QLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKA 196 (966)
T ss_pred HHHHHHHhc--hHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHh
Confidence 445555555 899999999999986432 6778999999999999999999999988875 565543 4455556666
Q ss_pred CCCHHHHHHHHccCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCchHHHHH
Q 044422 183 CRVIIDAYKVFEEMPV--RN-VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPN-DFTFTSILSACTGSGALGQGRSA 258 (519)
Q Consensus 183 ~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~ 258 (519)
.|++++|...+.+..+ |. ..+|+.|...+-.+|+...|++.|++.... .|+ ...|-.|...|...+.++.|...
T Consensus 197 ~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred hcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 8999999988887653 43 468999999999999999999999998774 454 46888999999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 044422 259 HCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKP 335 (519)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 335 (519)
|....... +....++..+...|-..|.++.|++.|++..+ | -+.+||.|..++-..|+..+|.+.|.+..... +-
T Consensus 275 Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~ 352 (966)
T KOG4626|consen 275 YLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PN 352 (966)
T ss_pred HHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-Cc
Confidence 98887754 55678888899999999999999999998875 4 34789999999999999999999999988753 22
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH--------
Q 044422 336 DAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE-LDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNAV-------- 405 (519)
Q Consensus 336 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-------- 405 (519)
-....+.|...+...|.++.|..+|....+. -|. ...++.|...|-.+|++++|..-|++. .++|+..
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGn 430 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGN 430 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcch
Confidence 3556788889999999999999999998873 454 456788999999999999999999876 6777643
Q ss_pred HH----------HHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCC
Q 044422 406 IW----------EAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNP 456 (519)
Q Consensus 406 ~~----------~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 456 (519)
+| ..+++++..+|.-..+++.|..+|-..|++.+|+.-++...+. +||.
T Consensus 431 t~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDf 489 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDF 489 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCC
Confidence 22 4568889999999999999999999999999999999987664 4554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-14 Score=158.59 Aligned_cols=252 Identities=11% Similarity=0.054 Sum_probs=151.7
Q ss_pred hccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHH
Q 044422 38 QISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVE 117 (519)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (519)
.+...|++++|...|+......... ...............+....+...++.+....+......+.........++.+
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p~~--~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAPPE--LDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCCCC--hHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHH
Confidence 3457899999999999886433222 22222222332223344445666666666555544433333333223344778
Q ss_pred HHHHHHHHHhHCCC------------------C--------------CCHHHH---------------------HHHHHH
Q 044422 118 KLISMHHDLHRERL------------------K--------------VDASFL---------------------STAVTS 144 (519)
Q Consensus 118 ~A~~~~~~m~~~g~------------------~--------------p~~~~~---------------------~~ll~~ 144 (519)
+|+..|+++.+... . |+...+ ......
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 88888877654210 0 000000 011233
Q ss_pred HhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC--CCh---hHHH------------HH
Q 044422 145 CGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV--RNV---VSWT------------AI 207 (519)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~---~~~~------------~l 207 (519)
+...|++++|...|+..++.. +.+..++..+..++.+.|++++|+..|++..+ |+. ..|. ..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 556788889999998888763 44677888888899999999999998888753 321 1121 12
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 044422 208 IAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNV 287 (519)
Q Consensus 208 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 287 (519)
...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.|+.+.+.. +.+...+..+...|. .++.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCH
Confidence 345678889999999998888764 3355667778888888999999999998888754 333444444444432 2233
Q ss_pred HHHHHHHH
Q 044422 288 EEAVYVFN 295 (519)
Q Consensus 288 ~~a~~~~~ 295 (519)
++|..+++
T Consensus 435 ~~A~~~l~ 442 (1157)
T PRK11447 435 EKALAFIA 442 (1157)
T ss_pred HHHHHHHH
Confidence 44444433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.7e-16 Score=145.96 Aligned_cols=369 Identities=15% Similarity=0.137 Sum_probs=287.9
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHH
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLI 120 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 120 (519)
+.|++.+|+.++..+.+ ..+.....|..+-.++.+.+ +...+-..+..-.+.++......-.-+.+.+..+..++|.
T Consensus 128 erg~~~~al~~y~~aie--l~p~fida~inla~al~~~~-~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQG-DLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcC-CCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhH
Confidence 67999999999998864 22345566666666666554 4444555555555555544433333333334444888898
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCh-HHHHHHHHHHHHhCCCHHHHHHHHccCC--
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIAN-VYVGSSLITLYSKCRVIIDAYKVFEEMP-- 197 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 197 (519)
..+.+..+... --+..|+.|...+-..|+...|.+-|++.++. .|+ ...|-.|...|...+.++.|...+.+..
T Consensus 205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 88888877532 23456888888888999999999999988764 454 4578889999999999999999998765
Q ss_pred -CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHH
Q 044422 198 -VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPN-DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVAN 275 (519)
Q Consensus 198 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (519)
.....+|..+...|-.+|..+.|+..|++..+. .|+ ...|+.|..++-..|++.+|...|+...... +......+
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence 345678888888999999999999999999875 454 5789999999999999999999999988874 55577889
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccC
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD-AITFLGVISSCRHGG 351 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g 351 (519)
.|...|...|++++|..+|....+ | -...+|.|...|-++|++++|+..|++..+ +.|+ ...|+.+-..|-..|
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh
Confidence 999999999999999999998765 3 346789999999999999999999999876 5666 457888888899999
Q ss_pred CHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHH
Q 044422 352 LVEEGKVYFDSMAKHGLKPE-LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANL 430 (519)
Q Consensus 352 ~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 430 (519)
+++.|.+.+.+.... .|+ ...++.|...|-..|++.+|..-|+. +++++|+.+.+|..|+.+
T Consensus 437 ~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~---------------aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRT---------------ALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred hHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHH---------------HHccCCCCchhhhHHHHH
Confidence 999999999999874 454 46788899999999999999986654 467888888888888876
Q ss_pred HhccCCH
Q 044422 431 YAGVRCW 437 (519)
Q Consensus 431 ~~~~g~~ 437 (519)
+---.+|
T Consensus 500 lq~vcdw 506 (966)
T KOG4626|consen 500 LQIVCDW 506 (966)
T ss_pred HHHHhcc
Confidence 6444333
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-14 Score=157.33 Aligned_cols=382 Identities=11% Similarity=0.035 Sum_probs=265.4
Q ss_pred cCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhh--------------hh
Q 044422 40 SSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSN--------------VF 105 (519)
Q Consensus 40 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 105 (519)
...|++++|...|+...... +.+...+..+-..+... +....+...+.......+...... +.
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~-g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQ-GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 36789999999998876322 22344555555555444 445556666555544333221100 00
Q ss_pred hhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 044422 106 DQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRV 185 (519)
Q Consensus 106 ~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 185 (519)
........+++++|+..|++..+.. +.+...+..+...+...|++++|.+.|+.+++.. +.+...+..+...|. .++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcC
Confidence 0111123348999999999998864 3456677778888899999999999999988764 445566777777764 567
Q ss_pred HHHHHHHHccCCCCC------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCch
Q 044422 186 IIDAYKVFEEMPVRN------------VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALG 253 (519)
Q Consensus 186 ~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 253 (519)
.++|..+++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 899999888775321 2245566778888999999999999998764 224567778889999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC----Ch---------hHHHHHHHHHHHcCChHH
Q 044422 254 QGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK----DI---------VSWNSMIAGYAQHGLAVR 320 (519)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~ 320 (519)
+|...++.+.+.. +.+...+..+...+.+.++.++|...++.+... +. ..+..+...+...|+.++
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 9999999988754 445555555666677889999999999887642 11 112345667888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 044422 321 AIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPI 400 (519)
Q Consensus 321 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 400 (519)
|..+++. .+.+...+..+...+.+.|++++|...|++..+.. +.+...+..+...|...|++++|.+.++...
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll- 664 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP- 664 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh-
Confidence 9998872 24455667778888899999999999999998753 3467788889999999999999999888662
Q ss_pred CCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 401 YPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 401 ~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
+..|+++..+..+..++...|++++|.++++++...
T Consensus 665 --------------~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 665 --------------ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred --------------ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 223344444444556666666666666666665543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-13 Score=123.14 Aligned_cols=388 Identities=13% Similarity=0.055 Sum_probs=270.1
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHh-hccccc--cchhhhc--ccCCCCCCCCchhhhhhhhhcCCccC
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFL-QTDSKH--LDSQKFN--HDFTGTNSTFGSSNVFDQLLDTPVVD 115 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (519)
+.|...++--+++.|. ..+...+..+...+++... ..++.. .+.+.+. +.+...++..| .+
T Consensus 127 S~~EvKDs~ilY~~m~-~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW-------------K~ 192 (625)
T KOG4422|consen 127 SSREVKDSCILYERMR-SENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW-------------KS 192 (625)
T ss_pred hhcccchhHHHHHHHH-hcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc-------------cc
Confidence 5899999999999998 4667777777777777643 222211 1222221 12222222222 12
Q ss_pred HHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHcc
Q 044422 116 VEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEE 195 (519)
Q Consensus 116 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 195 (519)
-+-|.-+|+. .+-+..||.++|.+.|+-...+.|..++++-.....+.+..+||.+|.+-.-.-+ .+++.+
T Consensus 193 G~vAdL~~E~-----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~E 263 (625)
T KOG4422|consen 193 GAVADLLFET-----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAE 263 (625)
T ss_pred ccHHHHHHhh-----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHH
Confidence 2223333332 2447889999999999999999999999998887778999999999987655544 445555
Q ss_pred CC----CCChhHHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchH-HHHHHHHHHH--
Q 044422 196 MP----VRNVVSWTAIIAAFAQEWQVDM----CLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQ-GRSAHCQTIR-- 264 (519)
Q Consensus 196 m~----~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~-- 264 (519)
|. .||..|+|+++++..+.|+++. |++++.+|++-|+.|...+|..+|..+++-++..+ +..++..+..
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 53 7999999999999999998754 67788999999999999999999999999988855 3444444432
Q ss_pred --cCC----CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------C---hhHHHHHHHHHHHcCChHHHHHHHHH
Q 044422 265 --MGF----FSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK--------D---IVSWNSMIAGYAQHGLAVRAIDLFEE 327 (519)
Q Consensus 265 --~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~---~~~~~~li~~~~~~g~~~~A~~~~~~ 327 (519)
..+ +.|...|...|+.|.+..+.+-|.++..-.... + ..-|..+....|+....+.-...|+.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 235667888899999999999999887766531 2 23466788888999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcC-CH--H-H--HHHHHHhCCCC
Q 044422 328 MMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAG-LL--E-E--ARDFIKQMPIY 401 (519)
Q Consensus 328 m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~--~-~--A~~~~~~~~~~ 401 (519)
|.-.-.-|+..+...++++....|.++-..++|..++..|..-....-.-++..+++.. +. . . --..+.+. -
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~--a 501 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKC--A 501 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHH--H
Confidence 99888889999999999999999999999999999999886666665555666666544 11 1 0 00011111 0
Q ss_pred CCHHH-HHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 044422 402 PNAVI-WEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLK 453 (519)
Q Consensus 402 p~~~~-~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~ 453 (519)
.|... +..-.+......-.+...+..+-.+.+.|++++|.+++....+.|-+
T Consensus 502 ad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ 554 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK 554 (625)
T ss_pred HHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence 00000 00000111111122345566778889999999999999999766643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-13 Score=143.57 Aligned_cols=390 Identities=9% Similarity=-0.005 Sum_probs=255.0
Q ss_pred hccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHH
Q 044422 38 QISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVE 117 (519)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (519)
..+..|+.++|++++..... ..+.....+..+-..+... +....+..++.......+................++.+
T Consensus 24 ia~~~g~~~~A~~~~~~~~~--~~~~~a~~~~~lA~~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRV--HMQLPARGYAAVAVAYRNL-KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 34478999999999988763 2233344455555555444 44455666666654444433322222222222334788
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC
Q 044422 118 KLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197 (519)
Q Consensus 118 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 197 (519)
+|+..+++..+.. +.+.. +..+..++...|+.+.|...++.+.+.. +-+...+..+..++...|..+.|+..++...
T Consensus 101 eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 101 EALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 8888888887652 33455 7777777778888888888888887764 3355566667777777888888888887766
Q ss_pred C-CCh------hHHHHHHHHHHh-----cCCh---HHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHHccCCchHHH
Q 044422 198 V-RNV------VSWTAIIAAFAQ-----EWQV---DMCLELYRMMRNS-MLEPNDF-TFT----SILSACTGSGALGQGR 256 (519)
Q Consensus 198 ~-~~~------~~~~~li~~~~~-----~~~~---~~a~~~~~~m~~~-g~~p~~~-t~~----~ll~~~~~~g~~~~a~ 256 (519)
. |+. .....++..... .+++ ++|+..++.+.+. ...|+.. .+. ..+..+...|+.++|.
T Consensus 178 ~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~ 257 (765)
T PRK10049 178 LTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVI 257 (765)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4 211 012222222221 1223 6677777777653 2223221 111 1134455668888888
Q ss_pred HHHHHHHHcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHcCChHHHHHHHHHH
Q 044422 257 SAHCQTIRMGFF-SYIQVANSLISMYCKCGNVEEAVYVFNNMHGKD-------IVSWNSMIAGYAQHGLAVRAIDLFEEM 328 (519)
Q Consensus 257 ~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m 328 (519)
..|+.+.+.+-+ |+. ....+..+|...|++++|+..|+.+.+.+ ...+..+..++...|++++|..+++.+
T Consensus 258 ~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~ 336 (765)
T PRK10049 258 SEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHT 336 (765)
T ss_pred HHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 888888876522 221 22224668888888999988888775422 234555666778888899998888888
Q ss_pred HHCCC-----------CCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 044422 329 MKQRV-----------KPDA---ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDF 394 (519)
Q Consensus 329 ~~~~~-----------~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 394 (519)
.+... .|+. ..+..+...+...|+.++|..+++++.... +-+...+..+...+...|++++|++.
T Consensus 337 ~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~ 415 (765)
T PRK10049 337 INNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENE 415 (765)
T ss_pred hhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 76521 1232 234556667788888899988888887642 44567778888888888888888887
Q ss_pred HHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 395 IKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 395 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
+++. +.++|++...+..++..+.+.|++++|..+++++.+.
T Consensus 416 l~~a---------------l~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 416 LKKA---------------EVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHH---------------HhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7654 5677888888888999999999999999999999875
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.7e-13 Score=137.61 Aligned_cols=296 Identities=9% Similarity=-0.056 Sum_probs=224.9
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHh
Q 044422 137 FLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV---RNVVSWTAIIAAFAQ 213 (519)
Q Consensus 137 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~ 213 (519)
.+......+.+.|+++.|...|+..++. .|+...|..+..+|.+.|++++|+..++...+ .+...|..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3455667788899999999999998864 67888999999999999999999999998763 356688899999999
Q ss_pred cCChHHHHHHHHHHHHCCC----------------------------CC----CHHHHHHHHH-----------------
Q 044422 214 EWQVDMCLELYRMMRNSML----------------------------EP----NDFTFTSILS----------------- 244 (519)
Q Consensus 214 ~~~~~~a~~~~~~m~~~g~----------------------------~p----~~~t~~~ll~----------------- 244 (519)
.|++++|+..|......+- .| ..........
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999876654432210 00 0000000000
Q ss_pred ------H----------HHccCCchHHHHHHHHHHHcC-C-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Chh
Q 044422 245 ------A----------CTGSGALGQGRSAHCQTIRMG-F-FSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--K-DIV 303 (519)
Q Consensus 245 ------~----------~~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~ 303 (519)
+ ....+++++|.+.++...+.+ . +.....++.+...+...|++++|...|+...+ | +..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~ 366 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ 366 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 0 011246778888888887754 2 33456778888888889999999999988764 3 345
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLG 383 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 383 (519)
.|..+...+...|++++|...|++..+.. +-+..++..+...+...|++++|...|++..+.. +.+...+..+...+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence 77788888889999999999999887753 2346778888888888999999999999888753 334666777888888
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 384 RAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 384 ~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
+.|++++|...+++. +...|.++.+|..+..++...|++++|++.|++..+..
T Consensus 445 ~~g~~~eA~~~~~~a---------------l~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 445 KEGSIASSMATFRRC---------------KKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HCCCHHHHHHHHHHH---------------HHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 899999999888754 45567788888889999999999999999999987754
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.3e-12 Score=131.52 Aligned_cols=390 Identities=9% Similarity=-0.013 Sum_probs=242.7
Q ss_pred ccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHH
Q 044422 39 ISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEK 118 (519)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (519)
..+.|++..|+..|....+.....+ ..++ .++..++.. +....+...+.....+.+.........+......+++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~-~av~-dll~l~~~~-G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQS-GQVD-DWLQIAGWA-GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccch-hhHH-HHHHHHHHc-CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3478999999999999874333221 1222 444444444 455566666666664444444344433333344448999
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC
Q 044422 119 LISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV 198 (519)
Q Consensus 119 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 198 (519)
|+++|+++.+.... ++..+..++..+...++.++|.+.+..+... .|+...+-.++..+...++..+|+..++++.+
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999887533 5667777788888999999999999888765 45655665555555556666668888888862
Q ss_pred --C-ChhHHHHHHHHHHhcCChHHHHHHH------------------------------------------------HHH
Q 044422 199 --R-NVVSWTAIIAAFAQEWQVDMCLELY------------------------------------------------RMM 227 (519)
Q Consensus 199 --~-~~~~~~~li~~~~~~~~~~~a~~~~------------------------------------------------~~m 227 (519)
| +...+..+..++.+.|-...|+++. +.+
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 3 3444455555555554444444333 332
Q ss_pred HHC-CCCCCH-HH----HHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-
Q 044422 228 RNS-MLEPND-FT----FTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK- 300 (519)
Q Consensus 228 ~~~-g~~p~~-~t----~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~- 300 (519)
... +-.|.. .- ..-.+-++...|+..++.+.++.+...+.+....+-..+.++|...+++++|..+|..+..+
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 221 111211 11 11233455566677777777777776665545566677777777777777777777765431
Q ss_pred --------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHHccCCHHHHHH
Q 044422 301 --------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRV-------------KPDAI-TFLGVISSCRHGGLVEEGKV 358 (519)
Q Consensus 301 --------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~~-t~~~ll~~~~~~g~~~~a~~ 358 (519)
+......|.-+|...+++++|..+++++.+... .||-. .+..++..+...|++.+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 122235566677777777777777777765211 12222 23334555666777777777
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHH
Q 044422 359 YFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWD 438 (519)
Q Consensus 359 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~ 438 (519)
.++.+.... +-|......+...+...|.+.+|++.++.. ..++|++..+...++.++...|+|.
T Consensus 438 ~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a---------------~~l~P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 438 KLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAV---------------ESLAPRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---------------hhhCCccHHHHHHHHHHHHhhhhHH
Confidence 777776532 346666666777777777777777766544 4567888888888999999999999
Q ss_pred HHHHHHHHHHHC
Q 044422 439 QAARVRKLMKDK 450 (519)
Q Consensus 439 ~A~~~~~~m~~~ 450 (519)
+|..+.+...+.
T Consensus 502 ~A~~~~~~l~~~ 513 (822)
T PRK14574 502 QMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHhh
Confidence 998888776554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-12 Score=118.28 Aligned_cols=351 Identities=13% Similarity=0.109 Sum_probs=241.9
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHH
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLI 120 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 120 (519)
+.|+..+ -+|+..+ .....+..++.++++-. +.++|.
T Consensus 191 K~G~vAd--L~~E~~P------KT~et~s~mI~Gl~K~~-----------------------------------~~ERA~ 227 (625)
T KOG4422|consen 191 KSGAVAD--LLFETLP------KTDETVSIMIAGLCKFS-----------------------------------SLERAR 227 (625)
T ss_pred ccccHHH--HHHhhcC------CCchhHHHHHHHHHHHH-----------------------------------hHHHHH
Confidence 4555555 4445444 35567888888887665 888999
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHH----HHHccC
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAY----KVFEEM 196 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~----~~~~~m 196 (519)
+++++-.....+.+..+||.+|.+-+-. ...++..+|....+.||..|+|+++.+.++.|+++.|. +++.+|
T Consensus 228 ~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~Em 303 (625)
T KOG4422|consen 228 ELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEM 303 (625)
T ss_pred HHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 9999988888888999999998875433 23788888988888999999999999999999887654 455555
Q ss_pred C----CCChhHHHHHHHHHHhcCChHH-HHHHHHHHHH----CCCC---C-CHHHHHHHHHHHHccCCchHHHHHHHHHH
Q 044422 197 P----VRNVVSWTAIIAAFAQEWQVDM-CLELYRMMRN----SMLE---P-NDFTFTSILSACTGSGALGQGRSAHCQTI 263 (519)
Q Consensus 197 ~----~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~----~g~~---p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 263 (519)
+ +|...+|..+|..+++.++..+ +..++.+... ..++ | |..-|...+..|.+..+.+-|.++..-+.
T Consensus 304 KeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~ 383 (625)
T KOG4422|consen 304 KEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLK 383 (625)
T ss_pred HHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4 6888899999998888888754 4445555433 2222 3 44567788888888888888888877665
Q ss_pred HcC----CCCc---HHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 044422 264 RMG----FFSY---IQVANSLISMYCKCGNVEEAVYVFNNMHG----KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR 332 (519)
Q Consensus 264 ~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 332 (519)
... +.|+ ..-|..+..+.|.....+.-...|+.|.- |+..+...++.+..-.|.++-.-++|.++...|
T Consensus 384 tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 384 TGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred cCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 421 3333 23456677788888888888888888874 566777778888888888888888888888877
Q ss_pred CCCCHHHHHHHHHHHHccC-C---HHH----------HHHH-------HHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHH
Q 044422 333 VKPDAITFLGVISSCRHGG-L---VEE----------GKVY-------FDSMAKHGLKPELDHYSCVVDLLGRAGLLEEA 391 (519)
Q Consensus 333 ~~p~~~t~~~ll~~~~~~g-~---~~~----------a~~~-------~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 391 (519)
-+.+...-.-++..+++.. . .++ |..+ -.+|.+ ...+....+.+.-.+.+.|+.++|
T Consensus 464 ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA 541 (625)
T KOG4422|consen 464 HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKA 541 (625)
T ss_pred hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHH
Confidence 5555544444444444433 1 110 1111 122333 345666788888889999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHhhhcCCCCc--hhHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 044422 392 RDFIKQMPIYPNAVIWEAAESRLLLEPECA--ATHVQLANLYAGVRCWDQAARVRKLMKDKGL 452 (519)
Q Consensus 392 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~ 452 (519)
.+++..+.-+.|. .|..+ .+...|+..-.+.+....|..+++-|...+.
T Consensus 542 ~e~l~l~~~~~~~------------ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 542 WEMLGLFLRKHNK------------IPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHhcCCc------------CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 9998866111110 01111 1234467778888889999999999877654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-11 Score=129.85 Aligned_cols=333 Identities=9% Similarity=-0.037 Sum_probs=244.0
Q ss_pred cCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 044422 114 VDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVF 193 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 193 (519)
++.++|++++....... +.+...+..+...+...|+++.|..+|+..++.. +.+...+..+..++...|++++|...+
T Consensus 29 g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l 106 (765)
T PRK10049 29 GQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKA 106 (765)
T ss_pred CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 38899999999998622 4456678899999999999999999999988763 456677888999999999999999999
Q ss_pred ccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCc
Q 044422 194 EEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSY 270 (519)
Q Consensus 194 ~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 270 (519)
++... .+.. +..+..++...|+.++|+..++++.+.. +-+...+..+..++...+..+.|.+.++.... .|+
T Consensus 107 ~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~ 181 (765)
T PRK10049 107 KQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPA 181 (765)
T ss_pred HHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHH
Confidence 98862 3455 8888899999999999999999998864 23455566678888888999999988876654 222
Q ss_pred H------HHHHHHHHHHH-----hcCCH---HHHHHHHHhcCC-----CChh-HH----HHHHHHHHHcCChHHHHHHHH
Q 044422 271 I------QVANSLISMYC-----KCGNV---EEAVYVFNNMHG-----KDIV-SW----NSMIAGYAQHGLAVRAIDLFE 326 (519)
Q Consensus 271 ~------~~~~~li~~~~-----~~~~~---~~a~~~~~~~~~-----~~~~-~~----~~li~~~~~~g~~~~A~~~~~ 326 (519)
. .....++..+. ..+++ ++|++.++.+.+ |+.. .+ ...+.++...|++++|...|+
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~ 261 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQ 261 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1 11222222222 12233 677777777663 2211 11 111345567799999999999
Q ss_pred HHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CC
Q 044422 327 EMMKQRVK-PDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKP---ELDHYSCVVDLLGRAGLLEEARDFIKQMP-IY 401 (519)
Q Consensus 327 ~m~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~ 401 (519)
.+.+.+.+ |+.. -..+..++...|++++|...|+.+.+..-.. .......+..++...|++++|..+++.+. ..
T Consensus 262 ~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~ 340 (765)
T PRK10049 262 RLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS 340 (765)
T ss_pred HhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC
Confidence 99887632 4322 2224668889999999999999987643111 13456667778899999999999988872 22
Q ss_pred C-------------CHH---HH-----------------HHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHH
Q 044422 402 P-------------NAV---IW-----------------EAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 402 p-------------~~~---~~-----------------~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
| +.. .+ ..+++++...|.++..+..++..+...|++++|++.+++..
T Consensus 341 P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al 420 (765)
T PRK10049 341 PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAE 420 (765)
T ss_pred CceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3 210 11 45677788899999999999999999999999999999887
Q ss_pred HCCCCCCC
Q 044422 449 DKGLKTNP 456 (519)
Q Consensus 449 ~~g~~~~~ 456 (519)
... |+.
T Consensus 421 ~l~--Pd~ 426 (765)
T PRK10049 421 VLE--PRN 426 (765)
T ss_pred hhC--CCC
Confidence 754 664
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.7e-11 Score=126.48 Aligned_cols=386 Identities=10% Similarity=0.020 Sum_probs=238.8
Q ss_pred hhccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhcc-----------------------------ccccchhh
Q 044422 37 KQISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTD-----------------------------SKHLDSQK 87 (519)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----------------------------~~~~~~~~ 87 (519)
..+.+.|+.++|.+++..++.+....|....+.-.+....... +....+..
T Consensus 255 ~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (987)
T PRK09782 255 TALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQK 334 (987)
T ss_pred HHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4455899999999999998876555455544444433332110 00001111
Q ss_pred hcccCCCCCCCCchhhhhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHh-C-
Q 044422 88 FNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRT-G- 165 (519)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g- 165 (519)
+ ....+... ....+.......+...++...+..|.+.. +-+....-.+--...+.|+.++|.+++...... +
T Consensus 335 ~----~~~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~ 408 (987)
T PRK09782 335 L----LATLPANE-MLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD 408 (987)
T ss_pred H----hcCCCcch-HHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc
Confidence 1 11111111 11222222222234455555555565541 124444444444556778888888888877652 1
Q ss_pred CCChHHHHHHHHHHHHhCCC---HHHHHHHHccC-------------------------C---CC--ChhHHHHHHHHHH
Q 044422 166 FIANVYVGSSLITLYSKCRV---IIDAYKVFEEM-------------------------P---VR--NVVSWTAIIAAFA 212 (519)
Q Consensus 166 ~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m-------------------------~---~~--~~~~~~~li~~~~ 212 (519)
-.++....+.|+..|.+.+. ..++..+-..+ . .+ +...|..+..++.
T Consensus 409 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~ 488 (987)
T PRK09782 409 ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYR 488 (987)
T ss_pred cccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHH
Confidence 12344556677788877766 33333331111 1 12 4556677776666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 044422 213 QEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVY 292 (519)
Q Consensus 213 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 292 (519)
. ++.++|...+.+.... .|+......+...+...|++++|...++.+... +|+...+..+..++.+.|++++|..
T Consensus 489 ~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~ 563 (987)
T PRK09782 489 D-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDR 563 (987)
T ss_pred h-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHH
Confidence 5 7777788877766654 356554444455556788888888888876554 3444455666777788888888888
Q ss_pred HHHhcCCCChhHHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 044422 293 VFNNMHGKDIVSWN---SMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK 369 (519)
Q Consensus 293 ~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 369 (519)
.++...+.++...+ .+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...+++..+.. +
T Consensus 564 ~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-P 640 (987)
T PRK09782 564 WLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-P 640 (987)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 88776653332222 2233334458888888888888764 4566777777788888888888888888887743 3
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 370 PELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
-+...++.+...+...|+.++|...+++ ++++.|.++.++..+..++...|++++|...+++..+
T Consensus 641 d~~~a~~nLG~aL~~~G~~eeAi~~l~~---------------AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 641 NNSNYQAALGYALWDSGDIAQSREMLER---------------AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHH---------------HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3455667777788888888888877664 4567788888888888888888888888888888765
Q ss_pred CC
Q 044422 450 KG 451 (519)
Q Consensus 450 ~g 451 (519)
..
T Consensus 706 l~ 707 (987)
T PRK09782 706 DI 707 (987)
T ss_pred cC
Confidence 43
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.1e-11 Score=124.80 Aligned_cols=147 Identities=14% Similarity=0.064 Sum_probs=115.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHHH
Q 044422 308 MIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHG-----LKPELDHYSCVVDLL 382 (519)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~ 382 (519)
.+-++...|++.++++.|+.|...+.+....+-..+.++|...+.+++|..+++.+.... ..++......|.-+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 355677889999999999999988866555677888999999999999999999987532 223444457889999
Q ss_pred HHcCCHHHHHHHHHhCCC-CC---------------CHHHH------------------HHHHHhhhcCCCCchhHHHHH
Q 044422 383 GRAGLLEEARDFIKQMPI-YP---------------NAVIW------------------EAAESRLLLEPECAATHVQLA 428 (519)
Q Consensus 383 ~~~g~~~~A~~~~~~~~~-~p---------------~~~~~------------------~~~~~~~~~~~~~~~~~~~L~ 428 (519)
..++++++|..+++++.- .| |-..+ ..+++.+...|.|+.....+.
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A 457 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA 457 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999998831 22 11111 556778889999999999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCC
Q 044422 429 NLYAGVRCWDQAARVRKLMKDKGLKTNP 456 (519)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 456 (519)
..+...|.+.+|...++..... .|+.
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l--~P~~ 483 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESL--APRS 483 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhh--CCcc
Confidence 9999999999999999776554 4554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-11 Score=119.45 Aligned_cols=287 Identities=10% Similarity=0.036 Sum_probs=216.4
Q ss_pred hhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHH--HHHHHHHh
Q 044422 105 FDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGS--SLITLYSK 182 (519)
Q Consensus 105 ~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~ 182 (519)
..++..-..++++.|.+.+....+.+-.| ...|.....+..+.|+++.|...+..+.+. .|+...+. .....+..
T Consensus 89 ~~gl~a~~eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 89 EQALLKLAEGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH
Confidence 34444444469999998888765542222 223444455557899999999999999764 55554333 33668889
Q ss_pred CCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCc
Q 044422 183 CRVIIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND-------FTFTSILSACTGSGAL 252 (519)
Q Consensus 183 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~ 252 (519)
.|+++.|...++++.+ .++..+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 9999999999998863 46778899999999999999999999999987755332 1333444444455556
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 044422 253 GQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR 332 (519)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 332 (519)
+...++++.+.+. .+.+......+...+...|+.++|.+++++..+.....--.++.+....++.+++.+..+...+..
T Consensus 246 ~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 246 EGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhC
Confidence 6666777666443 356788889999999999999999999988776433333334555566799999999999998763
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 333 VKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 333 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+-|......+...|.+.+++++|.+.|+...+ ..|+...+..+...+.+.|+.++|.+++++.
T Consensus 325 -P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 325 -GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23555677888899999999999999999998 4699999999999999999999999998864
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-10 Score=124.12 Aligned_cols=260 Identities=8% Similarity=-0.049 Sum_probs=175.9
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHccCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044422 169 NVYVGSSLITLYSKCRVIIDAYKVFEEMP--VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSAC 246 (519)
Q Consensus 169 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 246 (519)
+...|..+..++.. ++.++|...+.+.. .|+......+...+...|++++|...|+++... +|+...+..+...+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 55667777777766 67777877666654 244332223334445788888888888876543 34444556667777
Q ss_pred HccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHH
Q 044422 247 TGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--KDIVSWNSMIAGYAQHGLAVRAIDL 324 (519)
Q Consensus 247 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~ 324 (519)
.+.|+.++|...++...+.. +.....+..+.......|++++|...+++..+ |+...|..+...+.+.|++++|...
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 78888888888888877764 33333444444444556888888888887764 6667777888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH
Q 044422 325 FEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNA 404 (519)
Q Consensus 325 ~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 404 (519)
+++..... +-+...++.+..++...|+.++|...++...+.. +-+...+..+..++...|++++|...+++.
T Consensus 632 l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~A------ 703 (987)
T PRK09782 632 LRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLV------ 703 (987)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH------
Confidence 88877753 2245566666667888888888888888887742 235667777888888888888888877654
Q ss_pred HHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 405 VIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
++++|++..+.........+..+++.|.+-+++--.
T Consensus 704 ---------l~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 704 ---------IDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred ---------HhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555666667777777777776665433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-13 Score=127.47 Aligned_cols=249 Identities=15% Similarity=0.173 Sum_probs=88.8
Q ss_pred HHHHHhCCCHHHHHHHHccC-C----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044422 177 ITLYSKCRVIIDAYKVFEEM-P----VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGA 251 (519)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m-~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 251 (519)
...+.+.|++++|+++++.. . ..|...|..+.......++.+.|...++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 44555566666666666332 1 123344444555555566666666666666554321 33444455554 56666
Q ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChhHHHHHHHHHHHcCChHHHHHHHH
Q 044422 252 LGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMH-----GKDIVSWNSMIAGYAQHGLAVRAIDLFE 326 (519)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~ 326 (519)
+++|..++....+.. ++...+..++..+.+.++++++.++++.+. ..+...|..+...+.+.|+.++|.+.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666655543332 344455566666666666666666666543 1355566667777777777777777777
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHH
Q 044422 327 EMMKQRVKP-DAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAV 405 (519)
Q Consensus 327 ~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~ 405 (519)
+..+. .| |......++..+...|+.+++..+++...+.. +.+...+..+..+|...|+.++|...+++.
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~------- 240 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKA------- 240 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH-------
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccc-------
Confidence 77764 33 45566677777777777777777777776543 445556677777777888888887777643
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHH
Q 044422 406 IWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLM 447 (519)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 447 (519)
++.+|+|+.....++.++...|+.++|.++.++.
T Consensus 241 --------~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 241 --------LKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp --------HHHSTT-HHHHHHHHHHHT---------------
T ss_pred --------cccccccccccccccccccccccccccccccccc
Confidence 4556677777777788888888888887777654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.4e-10 Score=110.41 Aligned_cols=277 Identities=11% Similarity=-0.070 Sum_probs=211.6
Q ss_pred CCChhhHHHHHHHHHHhCCCChHHH-HHHHHHHHHhCCCHHHHHHHHccCCC--CChhHHH--HHHHHHHhcCChHHHHH
Q 044422 148 TRNIRGGAPYQCLAIRTGFIANVYV-GSSLITLYSKCRVIIDAYKVFEEMPV--RNVVSWT--AIIAAFAQEWQVDMCLE 222 (519)
Q Consensus 148 ~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~--~li~~~~~~~~~~~a~~ 222 (519)
.|+++.|++.....-+.+ +++.. |-....+..+.|+++.|...+.++.+ |+...+. .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999998777654432 22333 33334455889999999999999874 4443333 33668899999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 044422 223 LYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYI-------QVANSLISMYCKCGNVEEAVYVFN 295 (519)
Q Consensus 223 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~ 295 (519)
.++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998875 345678889999999999999999999999998755333 233444555555566777888888
Q ss_pred hcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCH
Q 044422 296 NMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPEL 372 (519)
Q Consensus 296 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 372 (519)
.+.+ .++.....+..++...|+.++|.+++++..+. +||... .++.+....++.+++.+..+...+.. +-|.
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~ 328 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTP 328 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCH
Confidence 7754 47788899999999999999999999998874 455532 23444456699999999999988753 3456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 373 DHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
..+..+.+.+.+.|++++|.+.|+.. ...|+...+. .|..++.+.|+.++|..++++-..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~-----------------~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA-----------------WLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH-----------------HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67888999999999999999999987 4556655444 479999999999999999997643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-10 Score=112.88 Aligned_cols=288 Identities=13% Similarity=-0.006 Sum_probs=207.7
Q ss_pred hhhhhhcCCccCHHHHHHHHHHHhHCCCCCCH-HHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChH--HHHHHHHHHH
Q 044422 104 VFDQLLDTPVVDVEKLISMHHDLHRERLKVDA-SFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANV--YVGSSLITLY 180 (519)
Q Consensus 104 ~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~ 180 (519)
...++..-..++++.|.+.+....+. .|++ ..+-....+..+.|+.+.|.+.+....+.. |+. .+.-.....+
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHH
Confidence 45555555566999999999887665 3443 334455667778899999999999987653 443 3344457788
Q ss_pred HhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HccCCch
Q 044422 181 SKCRVIIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFT-SILSAC---TGSGALG 253 (519)
Q Consensus 181 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~---~~~g~~~ 253 (519)
...|+++.|...++.+.+ .+...+..+...+.+.|++++|.+.+..+.+.++.+ ...+. .-..++ ...+..+
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999873 466788899999999999999999999999887543 33231 111111 2222223
Q ss_pred HHHHHHHHHHHcC---CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhH---HHHHHHHHHHcCChHHHHHHH
Q 044422 254 QGRSAHCQTIRMG---FFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--KDIVS---WNSMIAGYAQHGLAVRAIDLF 325 (519)
Q Consensus 254 ~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~---~~~li~~~~~~g~~~~A~~~~ 325 (519)
.+...+..+.+.. .+.+...+..+...+...|+.++|.+++++..+ ||... ...........++.+.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 2333444443332 124788999999999999999999999998876 43321 122222334457888899999
Q ss_pred HHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 326 EEMMKQRVKPDA---ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 326 ~~m~~~~~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+...+. .|+. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 323 e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 323 EKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 887765 3443 4556788889999999999999996554446799999999999999999999999999864
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-11 Score=122.43 Aligned_cols=256 Identities=9% Similarity=0.027 Sum_probs=183.7
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCC
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRN 200 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 200 (519)
+++-.+...|+.|+..||.++|..||..|+.+.|- +|..|.-...+.+..+++.++.+..++++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45678888999999999999999999999999999 9999988888889999999999999999988776 789
Q ss_pred hhHHHHHHHHHHhcCChHH---HHHHHHHH----HHCCCCCCHHHHHHHHHHHHccCCchHHH---------HHHHHHHH
Q 044422 201 VVSWTAIIAAFAQEWQVDM---CLELYRMM----RNSMLEPNDFTFTSILSACTGSGALGQGR---------SAHCQTIR 264 (519)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~---a~~~~~~m----~~~g~~p~~~t~~~ll~~~~~~g~~~~a~---------~~~~~~~~ 264 (519)
..+|+.|..+|..+|+... +.+.+... ...|+--...-+-..++++- +-...|. .++....+
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p--~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCP--HSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCc--ccchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999655 33322221 12233222222222222221 1111111 12222222
Q ss_pred cC-CCCcHHHHHH---HHHHHHhc-CCHHHHHHHHHhcCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 044422 265 MG-FFSYIQVANS---LISMYCKC-GNVEEAVYVFNNMHG-KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAI 338 (519)
Q Consensus 265 ~~-~~~~~~~~~~---li~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 338 (519)
.+ ..|...-++. +++-.... ..+++-..+-+...+ ++..+|..++.+-..+|+.+.|..++.+|.+.|++.+.+
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 22 1111111111 13322222 234455555555554 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHH
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLE 389 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 389 (519)
-|..|+-+ .+....+..++..|.+.|+.|+..|+...+..+...|...
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 99998866 8888999999999999999999999998887777755433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-09 Score=108.45 Aligned_cols=280 Identities=12% Similarity=-0.033 Sum_probs=204.5
Q ss_pred cCCChhhHHHHHHHHHHhCCCChHH-HHHHHHHHHHhCCCHHHHHHHHccCCC--CCh--hHHHHHHHHHHhcCChHHHH
Q 044422 147 STRNIRGGAPYQCLAIRTGFIANVY-VGSSLITLYSKCRVIIDAYKVFEEMPV--RNV--VSWTAIIAAFAQEWQVDMCL 221 (519)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~--~~~~~li~~~~~~~~~~~a~ 221 (519)
..|+++.|.+.+....+. .|+.. .+-....+..+.|+.+.|.+.+.+..+ |+. ...-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 679999999999877664 45433 344456778889999999999998642 443 23344578888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHH---H----hcCCHHHHHHHH
Q 044422 222 ELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMY---C----KCGNVEEAVYVF 294 (519)
Q Consensus 222 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~----~~~~~~~a~~~~ 294 (519)
..++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+..+.......-..++ . .....+...+.+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998875 3356788899999999999999999999999987544333222112222 2 222344555566
Q ss_pred HhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 044422 295 NNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAIT--F-LGVISSCRHGGLVEEGKVYFDSMAKHGL 368 (519)
Q Consensus 295 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t--~-~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 368 (519)
+...+ .++..+..+...+...|+.++|.+++++..+.. ||... + ....-.....++.+.+.+.++...+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 65543 378889999999999999999999999998863 34331 1 112222344578888999988887642
Q ss_pred CcCH--HHHHHHHHHHHHcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHH
Q 044422 369 KPEL--DHYSCVVDLLGRAGLLEEARDFIKQ--M-PIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARV 443 (519)
Q Consensus 369 ~p~~--~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~ 443 (519)
+-|. ....++...+.+.|++++|.+.|+. . ...|+...+. .|...+.+.|+.++|.++
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-----------------~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-----------------MAADAFDQAGDKAEAAAM 392 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-----------------HHHHHHHHcCCHHHHHHH
Confidence 2233 5667899999999999999999994 2 3455555443 479999999999999999
Q ss_pred HHHHHH
Q 044422 444 RKLMKD 449 (519)
Q Consensus 444 ~~~m~~ 449 (519)
+++-..
T Consensus 393 ~~~~l~ 398 (409)
T TIGR00540 393 RQDSLG 398 (409)
T ss_pred HHHHHH
Confidence 998543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=122.35 Aligned_cols=251 Identities=14% Similarity=0.045 Sum_probs=60.9
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCCh
Q 044422 142 VTSCGSTRNIRGGAPYQCLAIRTGF-IANVYVGSSLITLYSKCRVIIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQV 217 (519)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~ 217 (519)
...+.+.|++++|.+++.......- +.|...|..+.......++++.|...++++.. .++..+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 3334444555555554433222211 12223333333344444455555555554442 122233334433 344555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 044422 218 DMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMG-FFSYIQVANSLISMYCKCGNVEEAVYVFNN 296 (519)
Q Consensus 218 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 296 (519)
++|.+++.+..+.. ++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.+++
T Consensus 94 ~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555444433221 233334444444455555555555554443321 223444444555555555555555555554
Q ss_pred cCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHH
Q 044422 297 MHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELD 373 (519)
Q Consensus 297 ~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 373 (519)
..+ | |....+.++..+...|+.+++..+++...+.. +.|...+..+..++...|+.++|...+++..+.. +.|+.
T Consensus 172 al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~ 249 (280)
T PF13429_consen 172 ALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPL 249 (280)
T ss_dssp HHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccc
Confidence 432 2 23444445555555555555555544444332 2233334444555555555555555555554422 22444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHh
Q 044422 374 HYSCVVDLLGRAGLLEEARDFIKQ 397 (519)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~ 397 (519)
....+..++...|+.++|.++..+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccc
Confidence 444555555555555555555443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.3e-10 Score=102.46 Aligned_cols=279 Identities=8% Similarity=0.038 Sum_probs=144.5
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhC-CC-ChHHHHHHHHHHHHhCCCHHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTG-FI-ANVYVGSSLITLYSKCRVIIDAYKV 192 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~-~~~~~~~~li~~~~~~g~~~~A~~~ 192 (519)
..++++.-.+.....|++.+...-+....+.-...|+++|+.+|+++.+.. .. -|..+|+.++-.--.+..+.--...
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 444555555555555544443333333333334455666666666555542 11 1344555444222221111111111
Q ss_pred HccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHH
Q 044422 193 FEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQ 272 (519)
Q Consensus 193 ~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 272 (519)
.-.+.+--+.|...+.+-|.-.++.++|...|++..+.+ +-....|+.+.+-|....+...|.+.+....+.. +.|-.
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyR 399 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYR 399 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHH
Confidence 111222334444555555556666666666666665543 2233455555566666666666666666666654 45556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044422 273 VANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRH 349 (519)
Q Consensus 273 ~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 349 (519)
.|-.|..+|.-.+.+.-|+-.|++..+ .|...|.+|..+|.+.++.++|++.|......|-. +...+..|.+.|-+
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~ 478 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEE 478 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHH
Confidence 666666666666666666666665543 25566666666666666666666666666655422 44566666666666
Q ss_pred cCCHHHHHHHHHHHHH----cCC-Cc-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044422 350 GGLVEEGKVYFDSMAK----HGL-KP-ELDHYSCVVDLLGRAGLLEEARDFIK 396 (519)
Q Consensus 350 ~g~~~~a~~~~~~m~~----~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (519)
.++..+|.+.|++-.+ .|. .| +....--|..-+.+.+++++|..+..
T Consensus 479 l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 479 LKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 6666666666655443 121 12 12222224455556666666655443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.7e-11 Score=114.47 Aligned_cols=277 Identities=12% Similarity=0.084 Sum_probs=204.9
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhC-C-CChHHHHHHHHHHHHhCCCHHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTG-F-IANVYVGSSLITLYSKCRVIIDAYKV 192 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~ 192 (519)
.+++|+..|... ...+.-+......+.++|-..+++++|+.+|+.+.+.. . .-+..+|.+.+.-+-+.-.+..--+-
T Consensus 334 ~~~~A~~~~~kl-p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKL-PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhh-HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 567777788773 33344445666677778888888888888888876643 1 23566777776555432222221122
Q ss_pred HccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcH
Q 044422 193 FEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEP-NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYI 271 (519)
Q Consensus 193 ~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 271 (519)
+-.+.+..+.+|.++..+|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|....... +.+-
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhY 489 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHY 489 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhh
Confidence 22222456789999999999999999999999998875 45 67899999899999999999999998876542 2233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044422 272 QVANSLISMYCKCGNVEEAVYVFNNMHGK---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCR 348 (519)
Q Consensus 272 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 348 (519)
..|--+.-.|.|.++++.|+-.|++..+- +.+....+...+-+.|+.++|++++++......+ |...--.....+.
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~ 568 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILF 568 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHH
Confidence 45556778899999999999999988763 5566677777888999999999999998876544 3333334455677
Q ss_pred ccCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 349 HGGLVEEGKVYFDSMAKHGLKPE-LDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 349 ~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
..++.++|++.++++++ +.|+ ...|..+.+.|.+.|+.+.|+.-|.-+
T Consensus 569 ~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred hhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 78999999999999998 4565 456777889999999999999877755
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.2e-10 Score=111.20 Aligned_cols=318 Identities=12% Similarity=0.060 Sum_probs=227.7
Q ss_pred cCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 044422 114 VDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVF 193 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 193 (519)
++.++|.+++.+.++.. +-+...|-+|...|-+.|+.+++...+-.+- +-.+-|...|-.+-....+.|.++.|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAA-HL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAA-HLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 48899999999988875 3367788888889999999888887764432 223446678888888888889999999999
Q ss_pred ccCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHccCCchHHHHHHHHHHHc-
Q 044422 194 EEMPVR---NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTS----ILSACTGSGALGQGRSAHCQTIRM- 265 (519)
Q Consensus 194 ~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~----ll~~~~~~g~~~~a~~~~~~~~~~- 265 (519)
.+..+. +...+---+..|-+.|+..+|.+.|.++.....+.|..-+.. +++.+...++.+.|.+.++.....
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 887743 333444456778888999999999988887643333333333 344555666667777777766552
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----C----------------------ChhHHH----HHHHHHHHc
Q 044422 266 GFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG----K----------------------DIVSWN----SMIAGYAQH 315 (519)
Q Consensus 266 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~----------------------~~~~~~----~li~~~~~~ 315 (519)
+-..+...++.+...|.+...++.|......+.. + +..+|+ -++-++...
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 2244566778888888888888888877766543 1 111111 223344444
Q ss_pred CChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 044422 316 GLAVRAIDLFEEMMKQRVKP--DAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARD 393 (519)
Q Consensus 316 g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 393 (519)
...+....+..-..+..+.| +...|.-+.+++...|++..|..+|..+......-+...|--+.++|...|.+++|.+
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 44444444555555555333 3456777888888889999999998888865444567788888888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHH
Q 044422 394 FIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 394 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
.|+. ++.+.|++..+-..|...|.+.|+.++|.+++..|.
T Consensus 471 ~y~k---------------vl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 471 FYEK---------------VLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHH---------------HHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 7764 467889999999999999999999999999999886
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.6e-11 Score=114.94 Aligned_cols=278 Identities=11% Similarity=0.044 Sum_probs=214.8
Q ss_pred ChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC------CChhHHHHHHHHHHhcCChHHHHHH
Q 044422 150 NIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV------RNVVSWTAIIAAFAQEWQVDMCLEL 223 (519)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~~~~~~a~~~ 223 (519)
+..+|...|+.+ ...+.-+..+...+..+|...+++++|.++|+.+.+ .+...|.+.+-.+-+. -++..
T Consensus 334 ~~~~A~~~~~kl-p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKL-PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhh-HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 567788888884 333344557788889999999999999999998863 4667777766543221 12222
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 044422 224 Y-RMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDI 302 (519)
Q Consensus 224 ~-~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 302 (519)
+ +.+.... +-...||..+.++|.-.++.+.|.+.|+...... +....+|+.+.+-+.....++.|...|+.....|+
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 2222221 3356799999999999999999999999988864 34788999999999999999999999999998888
Q ss_pred hHHHH---HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 044422 303 VSWNS---MIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVV 379 (519)
Q Consensus 303 ~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 379 (519)
..||+ +.-.|.+.++++.|.-.|++..+-+.. +.+....+...+-+.|+.|+|++++++..... +-|+-.--...
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence 77766 456789999999999999998875433 56666777778889999999999999998744 22444444466
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 380 DLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
..+...+++++|+..+++++ ++.|+...+|..++..|.+.|+.+.|+.-|--|.+..
T Consensus 565 ~il~~~~~~~eal~~LEeLk---------------~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELK---------------ELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHH---------------HhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 77788899999999888774 5567778889999999999999999999888776653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.2e-11 Score=120.09 Aligned_cols=244 Identities=15% Similarity=0.192 Sum_probs=170.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 044422 222 ELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKD 301 (519)
Q Consensus 222 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 301 (519)
.++-.+...|+.|+..||..+|.-||..|+.+.|- +|..|.....+.+..+|+.++.+...+++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46677888999999999999999999999999999 9999998888889999999999999999887776 788
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-HcCCCcCHHHHHHHHH
Q 044422 302 IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA-KHGLKPELDHYSCVVD 380 (519)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~li~ 380 (519)
..+|..+..+|...|++.. ++..++ -...+...+...|--..-..++..+. .-+.-||..+ .+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHH
Confidence 8999999999999999776 222222 12223334444444444444444432 2233344333 333
Q ss_pred HHHHcCCHHHHHHHHHhCCC----CCCHH-------------HHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHH
Q 044422 381 LLGRAGLLEEARDFIKQMPI----YPNAV-------------IWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARV 443 (519)
Q Consensus 381 ~~~~~g~~~~A~~~~~~~~~----~p~~~-------------~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~ 443 (519)
.....|-++.+.+++..+++ .|-.. ....+.+.+.. ..++.+|..++..-..+|+++.|..+
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHH
Confidence 34444555555555544431 11111 11111222222 46677888899999999999999999
Q ss_pred HHHHHHCCCCCCCeeEEEEEcCEEEEEEecCCcCcChhhHHHHHHHHHHHHHHcCCCCCcc
Q 044422 444 RKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEVH 504 (519)
Q Consensus 444 ~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~ 504 (519)
+.+|++.|+..++.++|-.+.+ .. ....++.++..|++.|+.|++.
T Consensus 227 l~emke~gfpir~HyFwpLl~g--------~~-------~~q~~e~vlrgmqe~gv~p~se 272 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG--------IN-------AAQVFEFVLRGMQEKGVQPGSE 272 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc--------Cc-------cchHHHHHHHHHHHhcCCCCcc
Confidence 9999999999999777765554 22 2246677889999999999983
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.6e-09 Score=94.36 Aligned_cols=284 Identities=13% Similarity=-0.006 Sum_probs=207.0
Q ss_pred cCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC----CChhHHHHHHHHHHhcCChHHHHH
Q 044422 147 STRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV----RNVVSWTAIIAAFAQEWQVDMCLE 222 (519)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~ 222 (519)
-.|++.+|+.....-.+.+-.| ...|-.-..+-...|+.+.|-+++.+..+ ++...+-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3477888888777766665333 33455555666677788888777777653 344556666677777888888887
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 044422 223 LYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYI-------QVANSLISMYCKCGNVEEAVYVFN 295 (519)
Q Consensus 223 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~ 295 (519)
-+.+....+ +-+.........+|.+.|++.....++..+.+.|.-.+. .+|+.+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 777777665 334556677778888888888888888888877755443 366777777766666777667777
Q ss_pred hcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-HcCCCcC
Q 044422 296 NMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA-KHGLKPE 371 (519)
Q Consensus 296 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-~~~~~p~ 371 (519)
.... .++..-.+++.-+.+.|+.++|.++.++..+.+..|+ .. ..-.+.+.++.+.-.+..+.-. .++- +
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h~~--~ 327 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQHPE--D 327 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhCCC--C
Confidence 7653 4677778888899999999999999999998877766 22 2334667788877777777665 4443 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 372 LDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
+..+..|...|.+.+.|.+|.+.|+.. ...|+..+|+. +..++.+.|+..+|..++++-...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~-----------------la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAE-----------------LADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHH-----------------HHHHHHHcCChHHHHHHHHHHHHH
Confidence 477888999999999999999999965 56677766665 799999999999999999987644
Q ss_pred CCCCC
Q 044422 451 GLKTN 455 (519)
Q Consensus 451 g~~~~ 455 (519)
-.+|.
T Consensus 391 ~~~~~ 395 (400)
T COG3071 391 TRQPN 395 (400)
T ss_pred hcCCC
Confidence 44443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-12 Score=84.24 Aligned_cols=50 Identities=16% Similarity=0.519 Sum_probs=44.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044422 199 RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG 248 (519)
Q Consensus 199 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 248 (519)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888899999999999999999999999888899999999998888875
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.2e-12 Score=83.55 Aligned_cols=50 Identities=36% Similarity=0.646 Sum_probs=39.6
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044422 300 KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRH 349 (519)
Q Consensus 300 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 349 (519)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57778888888888888888888888888888888888888888877764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.9e-09 Score=97.29 Aligned_cols=184 Identities=14% Similarity=0.136 Sum_probs=132.0
Q ss_pred ccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 044422 248 GSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDL 324 (519)
Q Consensus 248 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 324 (519)
..|++++|.+.|.+.....-.-....||+ .-.+-..|++++|+++|-++.. .+......+...|-...+...|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 35677778777777766543223333333 3345667888888888776543 4666666677777777788888887
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 044422 325 FEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPN 403 (519)
Q Consensus 325 ~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 403 (519)
+-+.... ++.|......|...|-+.|+-.+|.+.+-+--+. ++.+..+...|...|....-+++|..+|++. -+.|+
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 7665433 4556777788888888888888888776554443 5667788888888888888888888888877 46888
Q ss_pred HHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 404 AVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
..-|..+ +..++.+.|+|.+|+++++...+.
T Consensus 659 ~~kwqlm----------------iasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 659 QSKWQLM----------------IASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHH----------------HHHHHHhcccHHHHHHHHHHHHHh
Confidence 8888775 567778889999999999887664
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.1e-09 Score=91.74 Aligned_cols=286 Identities=10% Similarity=0.084 Sum_probs=155.1
Q ss_pred ChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC-CCCh------hHHHHHHHHHHhcCChHHHHH
Q 044422 150 NIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP-VRNV------VSWTAIIAAFAQEWQVDMCLE 222 (519)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~------~~~~~li~~~~~~~~~~~a~~ 222 (519)
+.++|.+.|-+|.+.. +-+..+.-+|.+.|-+.|..|.|+++-+.+. .||. .+...|..-|...|-+|+|++
T Consensus 50 Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 4444555555544421 2223334444455555555555555554443 2222 122334455555566666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 223 LYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSY----IQVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 223 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
+|..+.+.| ..-......|+..|-...+|++|.++-..+.+.+-.+. ...|--|...+....+++.|...+.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 665555433 22334455566666666666666666555555443322 2234444455555566777777776665
Q ss_pred CCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHH
Q 044422 299 GKD---IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHY 375 (519)
Q Consensus 299 ~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 375 (519)
+.| +.+--.+...+...|++..|.+.|+...+.+..--..+...|..+|...|+.+....++..+.+....++ .-
T Consensus 208 qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~ 285 (389)
T COG2956 208 QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD--AE 285 (389)
T ss_pred hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--HH
Confidence 432 2233334456777788888888888877765444455677777888888888888888887776432333 23
Q ss_pred HHHHHHHHHcCCHHHHH-HHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHH---hccCCHHHHHHHHHHHHHCC
Q 044422 376 SCVVDLLGRAGLLEEAR-DFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLY---AGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 376 ~~li~~~~~~g~~~~A~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~---~~~g~~~~A~~~~~~m~~~g 451 (519)
..+.+.-....-.+.|. .+.+.+.-+|+...+..+ +..- +..|++.+-..+++.|....
T Consensus 286 l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl-----------------~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 286 LMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRL-----------------MDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHH-----------------HHhhhccccccchhhhHHHHHHHHHHH
Confidence 33333322222333443 344555667776655442 3322 22345677777888887766
Q ss_pred CCCCC
Q 044422 452 LKTNP 456 (519)
Q Consensus 452 ~~~~~ 456 (519)
++..+
T Consensus 349 l~~~~ 353 (389)
T COG2956 349 LRRKP 353 (389)
T ss_pred HhhcC
Confidence 55554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7e-09 Score=92.48 Aligned_cols=278 Identities=10% Similarity=0.131 Sum_probs=209.1
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCC-h--HHHHHHHHHHHHhCCCHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIA-N--VYVGSSLITLYSKCRVIIDAYK 191 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~--~~~~~~li~~~~~~g~~~~A~~ 191 (519)
+.++|+++|-+|.+.. +-+..+--++-+.|.+.|..+.|..+++.+.++.--+ + ....-.|..-|...|-+|.|+.
T Consensus 50 Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 7899999999999842 2344455678888999999999999999998753211 1 2244567778899999999999
Q ss_pred HHccCCC-C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 192 VFEEMPV-R--NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND----FTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 192 ~~~~m~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
+|..+.+ + -..+...|+..|-...+|++|+++-.++.+.+-++.. .-|..|...+....+.+.|...+....+
T Consensus 129 ~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 129 IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 9999886 3 3457788999999999999999999999887655543 2345555666667889999999998887
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 044422 265 MGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDI----VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITF 340 (519)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 340 (519)
.. +-.+..--.+.+.+...|+++.|.+.|+.+.+.|+ .+...|..+|...|+.++....+..+.+....++ .-
T Consensus 209 a~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~ 285 (389)
T COG2956 209 AD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD--AE 285 (389)
T ss_pred hC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--HH
Confidence 65 33445556677889999999999999999987665 3567788999999999999999999988644444 33
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHc---CCHHHHHHHHHhC
Q 044422 341 LGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRA---GLLEEARDFIKQM 398 (519)
Q Consensus 341 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 398 (519)
..+-+.-....-.+.|...+.+-... +|+...+..+|..-... |...+....+.+|
T Consensus 286 l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 286 LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 34444444455566777666666553 59999999999876543 4455666666665
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-08 Score=91.96 Aligned_cols=287 Identities=13% Similarity=0.073 Sum_probs=228.1
Q ss_pred hhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 044422 104 VFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKC 183 (519)
Q Consensus 104 ~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 183 (519)
...++.+-.-++|.+|..+..+-.+.+-.| ...|..-..+..+.||.+.+-.++.+.-+.--.++..++-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 445555555669999999999988877554 4557777788889999999999999998764466777788888889999
Q ss_pred CCHHHHHHHHccC---CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCch
Q 044422 184 RVIIDAYKVFEEM---PVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND-------FTFTSILSACTGSGALG 253 (519)
Q Consensus 184 g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~ 253 (519)
|+++.|..-.++. ...++........+|.+.|++.....++.+|.+.|+--|. .+|..++.-+...+..+
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 9999998776655 4678899999999999999999999999999999875554 46777777777777777
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 044422 254 QGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK--DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 331 (519)
.-...|+..... ...++..-.+++.-+.++|+.++|.++.++..+. |.. -...-.+.+-++...-.+..++..+.
T Consensus 247 gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 247 GLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh
Confidence 766677666543 3556677788899999999999999999887654 333 22333456777888777777766554
Q ss_pred -CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 332 -RVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 332 -~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+-. .-.+.+|-..|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|.+..++.
T Consensus 324 h~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 324 HPED--PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred CCCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344 46788888999999999999999998777 5699999999999999999999999988865
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.6e-08 Score=92.66 Aligned_cols=327 Identities=11% Similarity=0.015 Sum_probs=222.9
Q ss_pred CHHHHHHHHHHHhHCCCCCC-HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCCHHHHHH-
Q 044422 115 DVEKLISMHHDLHRERLKVD-ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANV-YVGSSLITLYSKCRVIIDAYK- 191 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~- 191 (519)
.+++|+..+.+.++. .|| +..|...-.+|...|+|+.+.+.-...++. .|+- ..+..--.++-..|++++|+.
T Consensus 130 kY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~eal~D 205 (606)
T KOG0547|consen 130 KYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEALFD 205 (606)
T ss_pred cHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHHHHh
Confidence 799999999999974 677 788888888999999999988777666654 3432 244444455555566555442
Q ss_pred ---------------------HHcc---------CC---C---CChhHHHHHHHHHHh----------------------
Q 044422 192 ---------------------VFEE---------MP---V---RNVVSWTAIIAAFAQ---------------------- 213 (519)
Q Consensus 192 ---------------------~~~~---------m~---~---~~~~~~~~li~~~~~---------------------- 213 (519)
++.+ +. + |+....++..+.|..
T Consensus 206 ~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~ 285 (606)
T KOG0547|consen 206 VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALE 285 (606)
T ss_pred hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHH
Confidence 1111 11 1 222222222221111
Q ss_pred ---cC---ChHHHHHHHHHHHH---CCCCCC---------HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHH
Q 044422 214 ---EW---QVDMCLELYRMMRN---SMLEPN---------DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVAN 275 (519)
Q Consensus 214 ---~~---~~~~a~~~~~~m~~---~g~~p~---------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (519)
.+ .+.+|.+.+.+-.. .....+ ..+.......+.-.|+.-.+..-++..++....+ ...|-
T Consensus 286 ~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI 364 (606)
T KOG0547|consen 286 ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYI 364 (606)
T ss_pred HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc-chHHH
Confidence 01 12222222221110 001111 1222222223345678888999999988875333 33366
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL 352 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 352 (519)
-+..+|...++.++....|+.... .|+.+|..-...+.-.+++++|..=|++.+..... +...|..+..+..+.++
T Consensus 365 ~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k 443 (606)
T KOG0547|consen 365 KRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHK 443 (606)
T ss_pred HHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHH
Confidence 667789999999999999998764 36678877777777788999999999998765321 45566666667778899
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-------HHHH-----------------
Q 044422 353 VEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPN-------AVIW----------------- 407 (519)
Q Consensus 353 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------~~~~----------------- 407 (519)
++.+...|++.++. ++--+..|+.....+..+++++.|.+.|+.. ...|+ ...+
T Consensus 444 ~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a 522 (606)
T KOG0547|consen 444 IAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQA 522 (606)
T ss_pred HHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHH
Confidence 99999999998864 6667888999999999999999999999875 33333 1111
Q ss_pred -HHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHH
Q 044422 408 -EAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 408 -~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
+.+.++++++|.+.-+|..|...-...|+.++|+++|++-.
T Consensus 523 ~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 523 ENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999854
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.1e-08 Score=98.42 Aligned_cols=180 Identities=13% Similarity=0.086 Sum_probs=122.0
Q ss_pred CHHHHHHHHHHHhHCCCC--CCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChH--HHHHHHHHHHHhCCCHHHHH
Q 044422 115 DVEKLISMHHDLHRERLK--VDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANV--YVGSSLITLYSKCRVIIDAY 190 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~ 190 (519)
++..++.+...+...... .-+..|-.+.+++-..|++++|...|....+. .++. ..+-.|...|.+.|+++.+.
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~ 362 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESK 362 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHH
Confidence 888888888887764311 12334667788888889999999888776654 3443 34556788888899999998
Q ss_pred HHHccCCC---CChhHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHH---
Q 044422 191 KVFEEMPV---RNVVSWTAIIAAFAQEW----QVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHC--- 260 (519)
Q Consensus 191 ~~~~~m~~---~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~--- 260 (519)
..|+.+.. .+..+...|...|...+ ..++|..++.+....- +.|...|..+...+-...-+.. ..+|.
T Consensus 363 ~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~ 440 (1018)
T KOG2002|consen 363 FCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNAL 440 (1018)
T ss_pred HHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHH
Confidence 88888763 34456666666666654 4566666666665543 4466677666666655443333 44443
Q ss_pred -HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 261 -QTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 261 -~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
.+...+.++.+...|.+...+...|++.+|...|+...
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 33455656778888888888888888888888887654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.9e-09 Score=94.23 Aligned_cols=194 Identities=10% Similarity=0.065 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044422 171 YVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACT 247 (519)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 247 (519)
..+..+...+...|++++|...+++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 344445555555555555555555443 1223344444455555555555555555444432 122333444444444
Q ss_pred ccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 044422 248 GSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEE 327 (519)
Q Consensus 248 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 327 (519)
..|++++|.+.++...+....+ .....+..+...+...|++++|...+++
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYP------------------------------QPARSLENAGLCALKAGDFDKAEKYLTR 160 (234)
T ss_pred HcccHHHHHHHHHHHHhccccc------------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555554444444321101 1122344444555555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 044422 328 MMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQ 397 (519)
Q Consensus 328 m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (519)
..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.
T Consensus 161 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 161 ALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55432 112334455555555556666666666555543 223344444555555555666666555444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-08 Score=92.43 Aligned_cols=159 Identities=13% Similarity=0.122 Sum_probs=103.1
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHH
Q 044422 238 TFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQ 314 (519)
Q Consensus 238 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 314 (519)
.+..+...+...|++++|...++...+.. +.+...+..+...|...|++++|.+.+++..+ .+...+..+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 33344444444444444444444444332 22334444555555555555555555554432 233456666667777
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 044422 315 HGLAVRAIDLFEEMMKQRVK-PDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARD 393 (519)
Q Consensus 315 ~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 393 (519)
.|++++|.+.+++..+.... .....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|..
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHH
Confidence 78888888888877664322 234456667788899999999999999998753 3356678889999999999999999
Q ss_pred HHHhC
Q 044422 394 FIKQM 398 (519)
Q Consensus 394 ~~~~~ 398 (519)
.+++.
T Consensus 191 ~~~~~ 195 (234)
T TIGR02521 191 YLERY 195 (234)
T ss_pred HHHHH
Confidence 99876
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.1e-08 Score=92.54 Aligned_cols=289 Identities=12% Similarity=0.144 Sum_probs=218.5
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCC------ChhHHHHHHHHHHhcC
Q 044422 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVR------NVVSWTAIIAAFAQEW 215 (519)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~~ 215 (519)
..++......+.+.+-.+.....|++-+...-+....+.-...+++.|+.+|+++.+. |..+|..++-. +..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhh
Confidence 3445555677777777788888888777777777777778889999999999999753 55677766543 333
Q ss_pred ChHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 044422 216 QVDM---CLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVY 292 (519)
Q Consensus 216 ~~~~---a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 292 (519)
+..- |..++ .-. +--..|+..+.+-|+-.++.++|...|+...+.+ +.....|+.+.+-|....+...|.+
T Consensus 312 ~skLs~LA~~v~---~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSKLSYLAQNVS---NID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHHHHHHHHHHH---Hhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 2222 22222 111 2334678888899999999999999999999986 5667899999999999999999999
Q ss_pred HHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 044422 293 VFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK 369 (519)
Q Consensus 293 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 369 (519)
.++...+ .|-..|-.+..+|.-.+.+.=|+-.|++..+.. +-|...|..|.++|.+.++.++|.+.|......| .
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 9998765 477899999999999999999999999998763 4478899999999999999999999999999877 3
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHH
Q 044422 370 PELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
.+...+..|.+.|-+.++..+|...|++.-. +. ...-..+|....+..-|..-+.+.+++++|........
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~-----~~---~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVE-----VS---ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HH---HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 3668899999999999999999998876510 00 00000111111222237788888888888888665543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-07 Score=94.86 Aligned_cols=312 Identities=12% Similarity=0.033 Sum_probs=186.0
Q ss_pred ccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHHHHHHHHhHC--CCCCCHHHHHHHHHHHhcCCChhhHHHHHH
Q 044422 82 HLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLISMHHDLHRE--RLKVDASFLSTAVTSCGSTRNIRGGAPYQC 159 (519)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 159 (519)
.+.+.+.|......++...-..+-.+-..-+.+++..|+.+|...... ..+||... .+-.++.+.++.+.|...|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 344555555555555444434444444444445888888888886543 34555532 23355668888888888888
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCC---HHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 044422 160 LAIRTGFIANVYVGSSLITLYSKCRV---IIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLE 233 (519)
Q Consensus 160 ~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 233 (519)
..++.. +-++.++-.|.-.-....+ +..+...+...- ..|++..+.|...|.-.|++..++.+...+......
T Consensus 224 ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 887653 2222333333222222222 334444444332 357788888888888888888888888877654311
Q ss_pred --CCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHH
Q 044422 234 --PNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--K-DIVSWNSM 308 (519)
Q Consensus 234 --p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 308 (519)
.-+..|-.+.+++-..|++++|...|.+..+..-......+--+...|.+.|+++.+...|+.+.+ | +..+..++
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 123457778888888888888888887776653222234455677888888888888888887764 2 34455555
Q ss_pred HHHHHHcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH----HcCCCcCHHHHHHHHH
Q 044422 309 IAGYAQHG----LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA----KHGLKPELDHYSCVVD 380 (519)
Q Consensus 309 i~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~----~~~~~p~~~~~~~li~ 380 (519)
...|+..+ ..++|..++.+..+.- +.|...|..+...+.. ++...++.++.... ..+-.+.+...|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 55555553 3455555555555442 3355555555544443 33333355544433 3444466666677776
Q ss_pred HHHHcCCHHHHHHHHHhC
Q 044422 381 LLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 381 ~~~~~g~~~~A~~~~~~~ 398 (519)
.....|++++|...|+..
T Consensus 461 lhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHhcChHHHHHHHHHH
Confidence 677777777777666654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-08 Score=103.25 Aligned_cols=173 Identities=8% Similarity=-0.040 Sum_probs=82.7
Q ss_pred HHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHH
Q 044422 186 IIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQT 262 (519)
Q Consensus 186 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 262 (519)
+++|...+++..+ .+...|..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...++..
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555555555432 234445555555555555666666555555543 223344555555555556666666555555
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 044422 263 IRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAI 338 (519)
Q Consensus 263 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 338 (519)
.+.. +.+...+..++..+...|++++|...+++..+ | ++..+..+..++...|+.++|...+.++... .|+..
T Consensus 399 l~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~ 475 (553)
T PRK12370 399 LKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGL 475 (553)
T ss_pred HhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhH
Confidence 5543 11222222233334445555666555554431 2 2333444555555666666666666554332 22222
Q ss_pred -HHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 339 -TFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 339 -t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
..+.+...+...| +.+...++.+.
T Consensus 476 ~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 476 IAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 2233333344444 35555555444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.8e-07 Score=87.65 Aligned_cols=341 Identities=12% Similarity=0.044 Sum_probs=215.3
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
.++-|..+|....+- ++-+...|......--..|..+....+++.++.. .+-....|-....-+...|++..|..++.
T Consensus 531 ~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~ 608 (913)
T KOG0495|consen 531 AIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILD 608 (913)
T ss_pred hHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHH
Confidence 556666666666553 3335555666655555666777777777776665 23344455555556666777777777766
Q ss_pred cCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcH
Q 044422 195 EMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYI 271 (519)
Q Consensus 195 ~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 271 (519)
..- ..+...|-+-+..-..+.++++|..+|.+.... .|+...|.--+..---.++.++|.++++...+. ++.-.
T Consensus 609 ~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~ 685 (913)
T KOG0495|consen 609 QAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFH 685 (913)
T ss_pred HHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchH
Confidence 654 234456666666667777777777777666553 455555555555555566777777777666654 23334
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044422 272 QVANSLISMYCKCGNVEEAVYVFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCR 348 (519)
Q Consensus 272 ~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 348 (519)
..|-.+...+-+.++++.|.+.|..-.+ | .+..|-.+...=-+.|.+-.|..++++..-.+.+ +...|...|+.-.
T Consensus 686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~El 764 (913)
T KOG0495|consen 686 KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMEL 764 (913)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHH
Confidence 5666777777777777777777765443 2 3455666666556666777777777776665433 5566667777777
Q ss_pred ccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHH---------------HHHHHh
Q 044422 349 HGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW---------------EAAESR 413 (519)
Q Consensus 349 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~---------------~~~~~~ 413 (519)
+.|..+.|..++.+.++. ++-+...|..-|....+.++-....+.+++..-.|....- .=++++
T Consensus 765 R~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ra 843 (913)
T KOG0495|consen 765 RAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERA 843 (913)
T ss_pred HcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766666543 3444455555555555555555555555554333322111 224567
Q ss_pred hhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCCeeEEEEEc
Q 044422 414 LLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIM 464 (519)
Q Consensus 414 ~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~ 464 (519)
++.+|++..+|.-+...+..+|.-++-.+++..-... .|..|..|..+.
T Consensus 844 vk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 844 VKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 7889999999999999999999999888988877653 577777776443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-07 Score=86.72 Aligned_cols=349 Identities=13% Similarity=0.097 Sum_probs=219.7
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhccc------------CCCCCCCCchhhhhh--
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHD------------FTGTNSTFGSSNVFD-- 106 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~-- 106 (519)
+.|.+++|..-|+...+ ..+.....++.++..++..+. +.....|.. +.+.......+.+..
T Consensus 288 q~gqy~dainsfdh~m~--~~pn~~a~~nl~i~~f~i~d~--ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCME--EAPNFIAALNLIICAFAIGDA--EKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred ecccchhhHhhHHHHHH--hCccHHhhhhhhhhheecCcH--HHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 78999999999998763 334456677777777654432 111111211 122222222222222
Q ss_pred ------hhhcCCccCHHHHHHHHHHHhHCCCCCCHHH-------------HHH--------HHHHHhcCCChhhHHHHHH
Q 044422 107 ------QLLDTPVVDVEKLISMHHDLHRERLKVDASF-------------LST--------AVTSCGSTRNIRGGAPYQC 159 (519)
Q Consensus 107 ------~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-------------~~~--------ll~~~~~~~~~~~a~~~~~ 159 (519)
.+...+..+.+.++-.-.++..--+.||-.. +.- -..-+.+.|+++.|.+++.
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 2222333345555544444443333333210 000 1122456777888877777
Q ss_pred HHHHhCCCChHHHHHHHHHHHHh--CCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 044422 160 LAIRTGFIANVYVGSSLITLYSK--CRVIIDAYKVFEEMPVR---NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEP 234 (519)
Q Consensus 160 ~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 234 (519)
...+..-+.-...-+.|-..+.- -.++..|...-+..... +......-.......|++++|.+.|++.....-..
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc 523 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC 523 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH
Confidence 66554433222333333332222 23455555555544322 22222222233345789999999999998765444
Q ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHH
Q 044422 235 NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAG 311 (519)
Q Consensus 235 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 311 (519)
....|+ +.-.+-..|++++|...|-.+... +..+..+.-.+.+.|-...+...|++++-+... .|+.....|...
T Consensus 524 ~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dl 601 (840)
T KOG2003|consen 524 TEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADL 601 (840)
T ss_pred HHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 334443 334456789999999988776543 245677777788889889999999999987664 478888999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-HHcCCHHH
Q 044422 312 YAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLL-GRAGLLEE 390 (519)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~ 390 (519)
|-+.|+-..|.+.+-+--+. ++-+..|...|...|....-++++...|++..- ++|+..-|..++-.| .+.|++.+
T Consensus 602 ydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 602 YDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred hhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHH
Confidence 99999999999877664443 566788888888888888889999999998765 789999999877655 56899999
Q ss_pred HHHHHHhC
Q 044422 391 ARDFIKQM 398 (519)
Q Consensus 391 A~~~~~~~ 398 (519)
|+++|++.
T Consensus 679 a~d~yk~~ 686 (840)
T KOG2003|consen 679 AFDLYKDI 686 (840)
T ss_pred HHHHHHHH
Confidence 99999987
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.5e-08 Score=101.34 Aligned_cols=243 Identities=12% Similarity=-0.034 Sum_probs=127.2
Q ss_pred HHHHHHHHccCCC--C-ChhHHHHHHHHHHh---------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCch
Q 044422 186 IIDAYKVFEEMPV--R-NVVSWTAIIAAFAQ---------EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALG 253 (519)
Q Consensus 186 ~~~A~~~~~~m~~--~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 253 (519)
+++|...|++..+ | +...|..+..++.. .+++++|...+++..+.+ +-+...+..+...+...|+++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHH
Confidence 4566666666542 2 23344444433321 233566666666666543 224455556666666667777
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 254 QGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--KD-IVSWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
+|...+++..+.. +.+...+..+...+...|++++|...++...+ |+ ...+..+...+...|++++|...+++..+
T Consensus 356 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 356 VGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 7777776666654 44455666666666667777777777766543 22 12223333345556666777776666654
Q ss_pred CCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHH
Q 044422 331 QRVKP-DAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE-LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWE 408 (519)
Q Consensus 331 ~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 408 (519)
.. .| +...+..+..++...|+.++|...+.++... .|+ ....+.+...|+..| ++|...++.+.
T Consensus 435 ~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll--------- 500 (553)
T PRK12370 435 QH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFL--------- 500 (553)
T ss_pred hc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHH---------
Confidence 42 22 2333444555566667777777766665432 232 222333444455555 35555444431
Q ss_pred HHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 409 AAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
+.....+.++.. +...|.-.|+-+.+..+ +++.+.|
T Consensus 501 ---~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 501 ---ESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ---HHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 111111222211 34555556666666555 7766654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.1e-07 Score=91.28 Aligned_cols=298 Identities=12% Similarity=0.067 Sum_probs=227.2
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHcc---CCCCChhHHHHHHHHHH
Q 044422 136 SFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEE---MPVRNVVSWTAIIAAFA 212 (519)
Q Consensus 136 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~~~~~~~~li~~~~ 212 (519)
.......+...-.|+.+.|..++.++++.. +.+...|-.|...|-..|+.+++...+-. +.+.|...|-.+.....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 333333333334499999999999999875 55778899999999999999999887744 44678889999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHH----HHHHHHHHHHhcCCHH
Q 044422 213 QEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQ----VANSLISMYCKCGNVE 288 (519)
Q Consensus 213 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~ 288 (519)
+.|+++.|.-+|.+..+.. +++...+-.-...|-+.|+...|...+.++....-+.|.. .--..++.|...++-+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999875 5566666677788999999999999999998875333322 3344567777888888
Q ss_pred HHHHHHHhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---------------------------
Q 044422 289 EAVYVFNNMHG-----KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD--------------------------- 336 (519)
Q Consensus 289 ~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------------------- 336 (519)
.|.+.++.... -+...+++++..|.+...++.|......+......+|
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 88888887654 2456788999999999999999999888876222222
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 044422 337 AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKP--ELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRL 414 (519)
Q Consensus 337 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~ 414 (519)
... ..+.-++.+....+....+...+.+..+.| +...|.-+.++|.+.|++.+|..++..+...|..
T Consensus 378 l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~---------- 446 (895)
T KOG2076|consen 378 LRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY---------- 446 (895)
T ss_pred chh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc----------
Confidence 222 123334556666666677777777666444 5678899999999999999999999988322211
Q ss_pred hcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 415 LLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 415 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
.+..+|..++..|...|.++.|...|+.....
T Consensus 447 ----~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 447 ----QNAFVWYKLARCYMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred ----cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 12346777899999999999999999998765
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.08 E-value=7e-07 Score=89.02 Aligned_cols=248 Identities=10% Similarity=0.003 Sum_probs=142.3
Q ss_pred cCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-----CHHH
Q 044422 114 VDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR-----VIID 188 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-----~~~~ 188 (519)
++.++|++.++.-.. .+......+......+.+.|+.++|..+|..+++.+ +.|..-|..+..+.+-.. +.+.
T Consensus 18 g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~~~~ 95 (517)
T PF12569_consen 18 GDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDEDVEK 95 (517)
T ss_pred CCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccccHHH
Confidence 499999999977543 344445556677788889999999999999999986 455666777777763333 4666
Q ss_pred HHHHHccCCC--C--------------------------------C-hhHHHHHHHHHHhcCChHHHHHHHHHHHHC---
Q 044422 189 AYKVFEEMPV--R--------------------------------N-VVSWTAIIAAFAQEWQVDMCLELYRMMRNS--- 230 (519)
Q Consensus 189 A~~~~~~m~~--~--------------------------------~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 230 (519)
...+++++.. | . +.+|+.+-..|....+.+-..+++......
T Consensus 96 ~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~ 175 (517)
T PF12569_consen 96 LLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLES 175 (517)
T ss_pred HHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcc
Confidence 6777776641 1 1 223344444444333333334444443221
Q ss_pred -C----------CCCCH--HHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 044422 231 -M----------LEPND--FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNM 297 (519)
Q Consensus 231 -g----------~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 297 (519)
+ -+|+. .++..+...|...|+.++|.+.++..+++. +-.+..|..-...|-+.|++.+|.+.++..
T Consensus 176 ~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~A 254 (517)
T PF12569_consen 176 NGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEA 254 (517)
T ss_pred cCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 0 12222 233444555566666666666666666653 223556666666666666666666666655
Q ss_pred CCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 298 HGK---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAI--------TFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 298 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--------t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
.+- |-..-+..+..+.++|++++|.+++....+.+..|-.. ...-...+|.+.|++..|++-|..+.
T Consensus 255 r~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 255 RELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 542 33444455555666666666666666665544322211 11223445566666666666555544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.9e-06 Score=82.05 Aligned_cols=325 Identities=12% Similarity=0.061 Sum_probs=242.4
Q ss_pred cCHHHHHHHHHH----HhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCCHH
Q 044422 114 VDVEKLISMHHD----LHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIA--NVYVGSSLITLYSKCRVII 187 (519)
Q Consensus 114 ~~~~~A~~~~~~----m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~ 187 (519)
++.+.+..+..+ +...|+..+...|..=...|-..|..-.+..+....+.-|+.- -..+|..--..|.+.+.++
T Consensus 454 gn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ 533 (913)
T KOG0495|consen 454 GNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIE 533 (913)
T ss_pred CCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHH
Confidence 355666555544 4567888888888888888888888888888888888777643 2357888888888899999
Q ss_pred HHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 188 DAYKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 188 ~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
-|..+|....+ .+...|......--..|..++...+|++....- +-....|.....-+-..|++..|..++..+.+
T Consensus 534 carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~ 612 (913)
T KOG0495|consen 534 CARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFE 612 (913)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99888887763 456677777777777888888888888887753 33344455555666677999999999988887
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHH
Q 044422 265 MGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD-AITFL 341 (519)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~ 341 (519)
.. +.+..++-+.+..-..+.+++.|..+|.+... ++...|.--+..---.++.++|.+++++..+. -|+ ...|.
T Consensus 613 ~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~l 689 (913)
T KOG0495|consen 613 AN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWL 689 (913)
T ss_pred hC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHH
Confidence 75 45778888888888889999999999987764 56677776666667778889999998888764 444 34566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCc
Q 044422 342 GVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECA 421 (519)
Q Consensus 342 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 421 (519)
.+-+.+-+.++++.|...|..=.+. ++-.+..|-.|.+.=-+.|+.-+|..++++. ...+|++.
T Consensus 690 mlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildra---------------rlkNPk~~ 753 (913)
T KOG0495|consen 690 MLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRA---------------RLKNPKNA 753 (913)
T ss_pred HHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHH---------------HhcCCCcc
Confidence 6666777788888887776654332 3445667777777777788888888887765 34568888
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCCeeEE
Q 044422 422 ATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSW 460 (519)
Q Consensus 422 ~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 460 (519)
..|...+++=.+.|+.+.|..++-+..+. -|..+.-|
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LW 790 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLW 790 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhH
Confidence 88888999999999999999887776554 25554444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-08 Score=90.45 Aligned_cols=228 Identities=10% Similarity=0.021 Sum_probs=185.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 044422 205 TAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC 284 (519)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (519)
+.+..+|.+.|-+.+|.+.|+.-... .|-..||..|-++|.+..++..|..++.+-.+. ++-++....-..+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 67889999999999999999888775 566778889999999999999999999888776 344555556677788888
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 044422 285 GNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFD 361 (519)
Q Consensus 285 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 361 (519)
++.++|.++|+...+ .++.+..++...|.-.++++.|+++|+++.+.|+. +...|+.+--+|.-.+.+|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998775 35666777778889999999999999999999987 66678888778888899999999888
Q ss_pred HHHHcCCCcC--HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHH
Q 044422 362 SMAKHGLKPE--LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQ 439 (519)
Q Consensus 362 ~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~ 439 (519)
+....--.|+ ...|-.+.......|++.-|.+.|+-. +..++++..+++.|...-.+.|++++
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla---------------L~~d~~h~ealnNLavL~~r~G~i~~ 447 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA---------------LTSDAQHGEALNNLAVLAARSGDILG 447 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHH---------------hccCcchHHHHHhHHHHHhhcCchHH
Confidence 8875433343 345666777777788888888777643 45567788899999999999999999
Q ss_pred HHHHHHHHHHCC
Q 044422 440 AARVRKLMKDKG 451 (519)
Q Consensus 440 A~~~~~~m~~~g 451 (519)
|..+++..+...
T Consensus 448 Arsll~~A~s~~ 459 (478)
T KOG1129|consen 448 ARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHHhhhhC
Confidence 999999877653
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.8e-08 Score=95.50 Aligned_cols=238 Identities=12% Similarity=0.092 Sum_probs=175.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCCHHHH-HHHHHHHHccCCchHHHHHHHHHHHc-----C--C
Q 044422 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNS-----M-LEPNDFTF-TSILSACTGSGALGQGRSAHCQTIRM-----G--F 267 (519)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~-----~--~ 267 (519)
.+...+...|...|+++.|+.+++...+. | ..|...+. +.+...|...+++++|..+|+.+... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555888999999999999999877553 2 13444433 44777888899999999999988753 2 1
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHC---CC
Q 044422 268 FSYIQVANSLISMYCKCGNVEEAVYVFNNMHG----------KDI-VSWNSMIAGYAQHGLAVRAIDLFEEMMKQ---RV 333 (519)
Q Consensus 268 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~ 333 (519)
+.-..+++.|..+|.+.|++++|...++...+ +.+ ..++.+...++..+++++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22355788888899999999998887776542 222 34667778889999999999999876542 13
Q ss_pred CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHH----cCC--Cc-CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 044422 334 KPD----AITFLGVISSCRHGGLVEEGKVYFDSMAK----HGL--KP-ELDHYSCVVDLLGRAGLLEEARDFIKQMPIYP 402 (519)
Q Consensus 334 ~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 402 (519)
.++ ..+++.|...|.+.|++++|.+++++... .+- .+ ....++.|...|.+.+++.+|.++|.+..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~--- 436 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK--- 436 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH---
Confidence 333 35899999999999999999999998873 111 22 24567889999999999999999998762
Q ss_pred CHHHHHHHHHhhhc-CCCCchhHHHHHHHHhccCCHHHHHHHHHHHH
Q 044422 403 NAVIWEAAESRLLL-EPECAATHVQLANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 403 ~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
+.+ +.+.. .|+...+|..|+..|.+.|++++|.++.+...
T Consensus 437 -----~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 -----DIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred -----HHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 111 22222 23444688999999999999999999988764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.9e-06 Score=79.90 Aligned_cols=332 Identities=13% Similarity=0.092 Sum_probs=188.8
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
+..+|..+|+....-.. -+...|..-+..=.+...+..|..+|+..+..= +.-...|-..+.+=-..|++..|.++|+
T Consensus 88 e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 56666666666655332 244444444555555566666666666655431 1112233334444444566666666665
Q ss_pred cCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc-CC-CCc
Q 044422 195 EMP--VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRM-GF-FSY 270 (519)
Q Consensus 195 ~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~-~~~ 270 (519)
+-. +|+...|++.|.-=.+.+.++.|..+|++..- +.|+..+|.--...=-+.|+...+..+|....+. |- ..+
T Consensus 166 rW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 166 RWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred HHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 544 46666666666666666666666666666544 2456666555555555556666666555554432 10 011
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhc--------------------------------------------CCC---Chh
Q 044422 271 IQVANSLISMYCKCGNVEEAVYVFNNM--------------------------------------------HGK---DIV 303 (519)
Q Consensus 271 ~~~~~~li~~~~~~~~~~~a~~~~~~~--------------------------------------------~~~---~~~ 303 (519)
...+.+...--.++..++.|.-+|+-. .+. |-.
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 122222222222223333333333211 111 344
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHH---HHccCCHHHHHHHHHHHHHcCCCcCHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDA-------ITFLGVISS---CRHGGLVEEGKVYFDSMAKHGLKPELD 373 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~t~~~ll~~---~~~~g~~~~a~~~~~~m~~~~~~p~~~ 373 (519)
+|--.+..--..|+.+...++|++.... ++|-. ..|.-+=-+ -....+++.+.++++...+. ++-...
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkF 401 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKF 401 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccc
Confidence 5666666666778999999999998865 45532 122111111 13467888899999888872 344445
Q ss_pred HHHHHH----HHHHHcCCHHHHHHHHHhC-CCCCCHHHH-----------------HHHHHhhhcCCCCchhHHHHHHHH
Q 044422 374 HYSCVV----DLLGRAGLLEEARDFIKQM-PIYPNAVIW-----------------EAAESRLLLEPECAATHVQLANLY 431 (519)
Q Consensus 374 ~~~~li----~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-----------------~~~~~~~~~~~~~~~~~~~L~~~~ 431 (519)
||.-+= .--.++.++..|.+++-.. |.-|-..+| ..+++-+.-.|.+..++.-.+..=
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELE 481 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHH
Confidence 554433 3335677888888887664 555655555 344566677788888888888888
Q ss_pred hccCCHHHHHHHHHHHHHCCC
Q 044422 432 AGVRCWDQAARVRKLMKDKGL 452 (519)
Q Consensus 432 ~~~g~~~~A~~~~~~m~~~g~ 452 (519)
...|+++.|..+|+....+..
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcc
Confidence 888999999999988877643
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-07 Score=92.98 Aligned_cols=228 Identities=12% Similarity=0.106 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCCC----------CChh-HHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC-C
Q 044422 171 YVGSSLITLYSKCRVIIDAYKVFEEMPV----------RNVV-SWTAIIAAFAQEWQVDMCLELYRMMRNS-----ML-E 233 (519)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~ 233 (519)
.+...|...|...|+++.|+.+++...+ +.+. ..+.+...|...+++++|..+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444466666666666666666655431 2222 2233555667777777777777776431 21 1
Q ss_pred C-CHHHHHHHHHHHHccCCchHHHHHHHHHHHc-----CC-CCc-HHHHHHHHHHHHhcCCHHHHHHHHHhcCC------
Q 044422 234 P-NDFTFTSILSACTGSGALGQGRSAHCQTIRM-----GF-FSY-IQVANSLISMYCKCGNVEEAVYVFNNMHG------ 299 (519)
Q Consensus 234 p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~------ 299 (519)
| -..+++.|...|.+.|++++|...++...+. |. .|. ...++.+...++..+++++|..++....+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2 2245666666777777777776665554431 11 122 22445566667777777777766664331
Q ss_pred -C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHH--
Q 044422 300 -K-D---IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ----RV--KP-DAITFLGVISSCRHGGLVEEGKVYFDSMAK-- 365 (519)
Q Consensus 300 -~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-- 365 (519)
+ + ..+++.|...|...|++++|.+++++.... +. .+ ....++.|...|.+.+.++.|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 1 2 246777888888888888888888776542 11 11 234567777778888888877777766543
Q ss_pred --cCC--CcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 366 --HGL--KPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 366 --~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
.|. +-...+|..|...|.+.|++++|.++.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 221 123456778888888888888888877655
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.8e-06 Score=75.76 Aligned_cols=299 Identities=10% Similarity=0.005 Sum_probs=209.2
Q ss_pred CCCCHHHHHHHHHHHhc--CCChhhHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHH---
Q 044422 131 LKVDASFLSTAVTSCGS--TRNIRGGAPYQCLAIRTG-FIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSW--- 204 (519)
Q Consensus 131 ~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--- 204 (519)
+.|+-.+....+.++++ .++...+.+.+-.+.... ++-|......+..++...|+.++|+..|++...-|+.+.
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 34444444555555543 355555555555444333 556778899999999999999999999998874443332
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 044422 205 TAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC 284 (519)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (519)
....-.+.+.|+.+....+...+.... ..+...|-.-........++..|..+-+..+... +.+...|-.-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence 223344567888888888877776542 2334444444455556778888888887777664 44556666666778889
Q ss_pred CCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-ccCCHHHHHHH
Q 044422 285 GNVEEAVYVFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVI-SSCR-HGGLVEEGKVY 359 (519)
Q Consensus 285 ~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll-~~~~-~~g~~~~a~~~ 359 (519)
+++++|.-.|+.... | +...|.-|+.+|...|++.+|.-+-+...+. ++-+..+.+.+- ..|. ....-++|.++
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 999999999987653 3 7789999999999999999999887776554 344566665552 3333 23345889999
Q ss_pred HHHHHHcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCH
Q 044422 360 FDSMAKHGLKPE-LDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCW 437 (519)
Q Consensus 360 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~ 437 (519)
++.-.+ +.|+ ....+.+...+...|..+++..++++. ...||.. .+..|...+.....+
T Consensus 427 ~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-----------------LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 427 AEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-----------------LHNHLGDIMRAQNEP 487 (564)
T ss_pred HHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-----------------HHHHHHHHHHHhhhH
Confidence 888776 4455 345677888889999999999998875 4445544 455589999999999
Q ss_pred HHHHHHHHHHHHCC
Q 044422 438 DQAARVRKLMKDKG 451 (519)
Q Consensus 438 ~~A~~~~~~m~~~g 451 (519)
.+|++.|....+..
T Consensus 488 Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 488 QKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998876643
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.2e-08 Score=87.02 Aligned_cols=222 Identities=10% Similarity=0.027 Sum_probs=187.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHcc
Q 044422 173 GSSLITLYSKCRVIIDAYKVFEEMP--VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTF-TSILSACTGS 249 (519)
Q Consensus 173 ~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~ 249 (519)
-+.+..+|.+.|-+.+|.+.|+... .|-+.||-.|-.+|.+..++..|+.++.+-.+. -|-.+|| .-..+.+-..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 3678899999999999999998876 478889999999999999999999999887764 4555555 5577788889
Q ss_pred CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHH
Q 044422 250 GALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFE 326 (519)
Q Consensus 250 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 326 (519)
++.++|.++|+...+.. +.++.....+...|.-.++++-|+++|+.+.+ .++..|+.+.-+|.-.+++|-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 99999999999998875 56777777788888899999999999998765 578899999999999999999999999
Q ss_pred HHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 327 EMMKQRVKPDA--ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 327 ~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+....-..|+. ..|-.+-......|++..|.+.|+....++ .-....++.|.-.-.+.|++++|..+++..
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 88776544553 356666667788999999999999988764 346678898988889999999999999877
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.9e-06 Score=78.38 Aligned_cols=330 Identities=8% Similarity=0.049 Sum_probs=161.8
Q ss_pred ccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHH
Q 044422 113 VVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKV 192 (519)
Q Consensus 113 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 192 (519)
.+++..|.++|++..+ -.|+...|++.++.=.+-..++.|..+++..+-. .|++.+|-.....=.+.|++..|..+
T Consensus 154 LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred hcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4466777777777664 4678888888888777777888888888776543 47777777666666777777777777
Q ss_pred HccCCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCchHHHHH------
Q 044422 193 FEEMPV------RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPN--DFTFTSILSACTGSGALGQGRSA------ 258 (519)
Q Consensus 193 ~~~m~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~------ 258 (519)
|+...+ -+...++++..-=.++..++.|.-+|+-.... ++-+ ...|......=-+-|+....+..
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 766542 12223444443334445555555555544443 1111 12232232222333433332221
Q ss_pred --HHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh---hHHHHHH--------HHHHHcCChHHHHH
Q 044422 259 --HCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--KDI---VSWNSMI--------AGYAQHGLAVRAID 323 (519)
Q Consensus 259 --~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~---~~~~~li--------~~~~~~g~~~~A~~ 323 (519)
|+.+.+.+ +.|-.+|--.++.--..|+.+...++|+.... |.. .-|...| -.=....+.+.+.+
T Consensus 309 ~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 22222222 34444555555555555666666666665442 100 0111111 01113344555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH----HHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 044422 324 LFEEMMKQRVKPDAITFLGVISS----CRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM- 398 (519)
Q Consensus 324 ~~~~m~~~~~~p~~~t~~~ll~~----~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 398 (519)
+|+...+. ++....||..+=-. -.++.++..|.+++.... |..|...+|...|..=.+.++++.+..++++.
T Consensus 388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55544441 22223333322111 123344444554444433 23344444544444444455555555554443
Q ss_pred CCCC-CHHHHHH---HHHh------------hhcCCCCch----hHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 399 PIYP-NAVIWEA---AESR------------LLLEPECAA----THVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 399 ~~~p-~~~~~~~---~~~~------------~~~~~~~~~----~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
...| |..+|.. ++.. +.++.+... .+-..|.-=...|.++.|..+++++.+..
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 2222 2223300 0000 001111111 22233555567899999999999998874
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.8e-07 Score=83.71 Aligned_cols=221 Identities=15% Similarity=0.061 Sum_probs=143.2
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 044422 215 WQVDMCLELYRMMRNSM-LEPN--DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAV 291 (519)
Q Consensus 215 ~~~~~a~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 291 (519)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|+...+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 35566666666666432 2222 3456667777788888888888888877764 456778888888888888888888
Q ss_pred HHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 044422 292 YVFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGL 368 (519)
Q Consensus 292 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 368 (519)
..|+...+ | +..+|..+..++...|++++|.+.|+...+. .|+..........+...++.++|...+++.... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~ 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-L 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-C
Confidence 88887754 3 4567777888888899999999999888775 343322222222344567889999998765532 2
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHH
Q 044422 369 KPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
.|+...+ .+ .....|+..++ +.++.+. ..+....++.|..+.+|..|+..+...|++++|...|++..
T Consensus 196 ~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~--------~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 196 DKEQWGW-NI--VEFYLGKISEE-TLMERLK--------AGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred CccccHH-HH--HHHHccCCCHH-HHHHHHH--------hcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3332222 22 22334555443 2333221 00011123345556788889999999999999999999988
Q ss_pred HCC
Q 044422 449 DKG 451 (519)
Q Consensus 449 ~~g 451 (519)
+..
T Consensus 264 ~~~ 266 (296)
T PRK11189 264 ANN 266 (296)
T ss_pred HhC
Confidence 765
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-06 Score=84.01 Aligned_cols=279 Identities=11% Similarity=0.043 Sum_probs=181.8
Q ss_pred CCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHH
Q 044422 131 LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAI 207 (519)
Q Consensus 131 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~l 207 (519)
..-+......-..-|-...++....++.+...+.. +++...+-.-|.++...|+..+-..+=.++. +..+.+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 34466666666666777778888888887777653 5566666666777777777665555555554 2355677777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc--CCCCcHHHHHHHHHHHHhcC
Q 044422 208 IAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRM--GFFSYIQVANSLISMYCKCG 285 (519)
Q Consensus 208 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~ 285 (519)
.--|...|+..+|.+.|.+.-..+.. =...|......++-.|.-++|...+...-+. |.. -+..| +.--|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTN 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhc
Confidence 77777778888888888766443211 1346677777777777778877777666543 211 11222 233466677
Q ss_pred CHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHccCCHHHH
Q 044422 286 NVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ----R--VKPDAITFLGVISSCRHGGLVEEG 356 (519)
Q Consensus 286 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~--~~p~~~t~~~ll~~~~~~g~~~~a 356 (519)
+.+.|.++|..... .|+...+-+.-.....+.+.+|..+|+..... + ...-..+++.|..+|.+.+.+++|
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 78888888876653 36666777766666677778888777765521 1 111344677777788888888888
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHhhh
Q 044422 357 KVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNAVIW-EAAESRLL 415 (519)
Q Consensus 357 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~~~~~~~ 415 (519)
...++...... +.+..++.++.-.|...|+++.|.+.|.+. .++|+..+. ..+..+++
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 88888877643 457777888888888888888888888765 567766433 33344443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.5e-06 Score=81.79 Aligned_cols=291 Identities=13% Similarity=0.114 Sum_probs=197.1
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC--CChhHHH-HHHHHHHhc---
Q 044422 141 AVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV--RNVVSWT-AIIAAFAQE--- 214 (519)
Q Consensus 141 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~-~li~~~~~~--- 214 (519)
-...+...|++++|++.++.-... +.............+.+.|+.++|..++..+.. |+-..|. .+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 344567889999999999764333 444556778888999999999999999999974 5544444 444444222
Q ss_pred --CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCch-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 044422 215 --WQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALG-QGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAV 291 (519)
Q Consensus 215 --~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 291 (519)
.+.+....+|+++...- |.......+.-.+.....+. .+...+..+...|+|+ +|+.+-..|....+..-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 35778888898886642 44443333333333322332 3455667777778654 4666666666555555555
Q ss_pred HHHHhcCC------------------CChh--HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcc
Q 044422 292 YVFNNMHG------------------KDIV--SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD-AITFLGVISSCRHG 350 (519)
Q Consensus 292 ~~~~~~~~------------------~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~ 350 (519)
+++..... |... ++.-+...|...|++++|++++++.++. +|+ ...|..-...+-+.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence 55554321 2222 3455567788999999999999999886 455 55677777889999
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCCHHHHHHHHHhhhcCCCCchhHHHH
Q 044422 351 GLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP---IYPNAVIWEAAESRLLLEPECAATHVQL 427 (519)
Q Consensus 351 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~L 427 (519)
|++++|...++...... .-|...-+..+..+.++|++++|.+++...- ..|-...+.. .+.......
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m---------Qc~Wf~~e~ 311 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM---------QCMWFETEC 311 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH---------HHHHHHHHH
Confidence 99999999999999865 3477777778999999999999999988772 1111111100 111233445
Q ss_pred HHHHhccCCHHHHHHHHHHHHH
Q 044422 428 ANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
+.+|.+.|++..|++-|....+
T Consensus 312 a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 312 AEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 8899999999999988776544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.9e-06 Score=76.55 Aligned_cols=276 Identities=9% Similarity=0.015 Sum_probs=197.5
Q ss_pred CHHHHHHHHHHHhHC-CCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHH-HHHHHHHHHHhCCCHHHHHHH
Q 044422 115 DVEKLISMHHDLHRE-RLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVY-VGSSLITLYSKCRVIIDAYKV 192 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~ 192 (519)
+...|..++-.+... -++-|......+...+...|+...|...|+..... .|+.. ......-.+.+.|+.+....+
T Consensus 211 ~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 211 KHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred ccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 334444444333332 36668888999999999999999999999987654 33322 222223345667777776666
Q ss_pred HccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCC
Q 044422 193 FEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFS 269 (519)
Q Consensus 193 ~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 269 (519)
...+- +.....|-.-.......+++..|+.+-++..+.. +-+...|..-...+...|+.++|.-.|....... +.
T Consensus 289 ~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~ 366 (564)
T KOG1174|consen 289 MDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PY 366 (564)
T ss_pred HHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hh
Confidence 65554 2345556555666677889999999998887754 3345566666677888999999999998887764 56
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHH-HHHH-HcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 044422 270 YIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMI-AGYA-QHGLAVRAIDLFEEMMKQRVKPD-AITFLGV 343 (519)
Q Consensus 270 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~l 343 (519)
+...|.-|++.|...|++.+|.-.-+...+ .+..+.+.+. ..+. .-..-++|.++++.-.+ +.|+ ....+.+
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~ 444 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLI 444 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHH
Confidence 789999999999999999998876654332 2333333331 1122 12235788888887665 4565 3456677
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 344 ISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 344 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
...|...|..+.+..++++... ..||....+.|.+.+...+.+.+|++.|...
T Consensus 445 AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 445 AELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7789999999999999999887 5699999999999999999999999988754
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-07 Score=86.35 Aligned_cols=248 Identities=10% Similarity=0.005 Sum_probs=158.7
Q ss_pred HHHHhCCCHHHHHHHHcc--CCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchH
Q 044422 178 TLYSKCRVIIDAYKVFEE--MPV-RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQ 254 (519)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~--m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 254 (519)
+-+.-.|++..++.-.+. ..+ .+......+.+++...|+.+.++ .+..... .|.......+...+...++-+.
T Consensus 9 rn~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 344456777777754441 111 12334555667888888777544 3333333 5665555555444443344444
Q ss_pred HHHHHHHHHHcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 044422 255 GRSAHCQTIRMGFF-SYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRV 333 (519)
Q Consensus 255 a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 333 (519)
+..-++.....+.. .+..+.-.....+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-- 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI-- 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 44333333222222 23333344445667788999999888865 46667777889999999999999999999865
Q ss_pred CCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 044422 334 KPDAITFLGVISSCRH----GGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA 409 (519)
Q Consensus 334 ~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 409 (519)
. +..+...+..++.. .+.+..|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+.
T Consensus 161 ~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a----------- 227 (290)
T PF04733_consen 161 D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEA----------- 227 (290)
T ss_dssp S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHH-----------
T ss_pred C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH-----------
Confidence 3 34456666666543 23689999999998754 5688899999999999999999999887653
Q ss_pred HHHhhhcCCCCchhHHHHHHHHhccCCH-HHHHHHHHHHHHC
Q 044422 410 AESRLLLEPECAATHVQLANLYAGVRCW-DQAARVRKLMKDK 450 (519)
Q Consensus 410 ~~~~~~~~~~~~~~~~~L~~~~~~~g~~-~~A~~~~~~m~~~ 450 (519)
+..+|.++.+...++....-.|+. +.+.+.+.+++..
T Consensus 228 ----l~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 228 ----LEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp ----CCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred ----HHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 456677788888899988888888 6677888888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.9e-06 Score=78.31 Aligned_cols=210 Identities=11% Similarity=-0.033 Sum_probs=135.9
Q ss_pred CHHHHHHHHHHHhHCC-CCCC--HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHH
Q 044422 115 DVEKLISMHHDLHRER-LKVD--ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYK 191 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 191 (519)
..+.++.-+..+.... ..|+ ...|......+...|+.+.|...|...++.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 6677888888887543 2222 3456667777888899999999998888764 4467788888899999999999999
Q ss_pred HHccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCC
Q 044422 192 VFEEMPV--R-NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFF 268 (519)
Q Consensus 192 ~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 268 (519)
.|++..+ | +..+|..+..++...|++++|.+.|++..+.. |+..........+...++.++|...+....... .
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~ 196 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-D 196 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-C
Confidence 8888753 3 45677888888888899999999998887753 433222222223445677888888886654332 2
Q ss_pred CcHHHHHHHHHHHHhcCCHHH--HHHHHHhcCCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 044422 269 SYIQVANSLISMYCKCGNVEE--AVYVFNNMHGK-------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 269 ~~~~~~~~li~~~~~~~~~~~--a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 331 (519)
++... ..+... ..|+... +.+.+..-.+. ...+|..+...+.+.|++++|...|++..+.
T Consensus 197 ~~~~~-~~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 197 KEQWG-WNIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred ccccH-HHHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33222 122222 2344332 22222221111 2346777777777777777777777777654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.1e-05 Score=75.49 Aligned_cols=300 Identities=10% Similarity=0.011 Sum_probs=164.8
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhCC-CChHH-HHHHHHHHHHhCCCHHHHHHHHccCCC--C-ChhHHHHHHHHH
Q 044422 137 FLSTAVTSCGSTRNIRGGAPYQCLAIRTGF-IANVY-VGSSLITLYSKCRVIIDAYKVFEEMPV--R-NVVSWTAIIAAF 211 (519)
Q Consensus 137 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~ 211 (519)
.|..+...+...|+.+.+...+....+..- .++.. ........+...|++++|.+++++..+ | +...++. ...+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHH
Confidence 344444444455666665555554443321 12221 112223345567777777777776542 2 3333332 1122
Q ss_pred H----hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 044422 212 A----QEWQVDMCLELYRMMRNSMLEPND-FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN 286 (519)
Q Consensus 212 ~----~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 286 (519)
. ..+..+.+.+.+.. ..+..|+. .....+...+...|++++|...++...+.. +.+...+..+...|...|+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 2 23444445544443 11223332 344455567777888888888888887765 4556677778888888888
Q ss_pred HHHHHHHHHhcCCC-----Ch--hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHccCCHHH
Q 044422 287 VEEAVYVFNNMHGK-----DI--VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRV-KPDAITF-L--GVISSCRHGGLVEE 355 (519)
Q Consensus 287 ~~~a~~~~~~~~~~-----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~-~--~ll~~~~~~g~~~~ 355 (519)
+++|...++...+. +. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 88888888776541 21 2345677778888999999998888754322 1111111 1 22333334443332
Q ss_pred HHHH--H-HHHHHcC-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCC---CHHHHHHHHHhhhcCCCCchhHHH
Q 044422 356 GKVY--F-DSMAKHG-LKPELDHYSCVVDLLGRAGLLEEARDFIKQMP--IYP---NAVIWEAAESRLLLEPECAATHVQ 426 (519)
Q Consensus 356 a~~~--~-~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p---~~~~~~~~~~~~~~~~~~~~~~~~ 426 (519)
+.+. + ....... .............++...|+.++|..+++.+. ... ....+ ........
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----------~~~~~~~l 312 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPA-----------RDVGLPLA 312 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhH-----------HhhhHHHH
Confidence 2222 1 1111110 01111222356777888999999999998772 111 11111 11234444
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 427 LANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 427 L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
...++...|++++|.+.+......+
T Consensus 313 ~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 313 EALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 6777889999999999999877654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-05 Score=73.56 Aligned_cols=162 Identities=14% Similarity=0.040 Sum_probs=91.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHH-------------------------------------------HHHHHHH
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHGKDIVSW-------------------------------------------NSMIAGY 312 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------------------------------------~~li~~~ 312 (519)
.|+-.|.+.+++.+|..+.+++...++.-| .++.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 445567788888888888887764333222 1233333
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 044422 313 AQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEAR 392 (519)
Q Consensus 313 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 392 (519)
.-..++++++..++....--.. |...--.+.++.+..|.+.+|.++|-.+....++-+..-...|.++|.+++..+-|.
T Consensus 370 FL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 3333444444444444333222 222222345666666777777777766654333323333344566777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 044422 393 DFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKT 454 (519)
Q Consensus 393 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~ 454 (519)
+++-++....+..+ ......+-|.+.+.+--|.+.|+.+......|
T Consensus 449 ~~~lk~~t~~e~fs----------------LLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 449 DMMLKTNTPSERFS----------------LLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHhcCCchhHHH----------------HHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 77776642222221 22235677888888888888898887765433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-05 Score=77.65 Aligned_cols=262 Identities=13% Similarity=0.049 Sum_probs=207.1
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
++++-+++++...+. .+++...+..=|.++...|+-.+-..+=..+++. .+-.+.+|-++..-|.-.|+..+|.+.|.
T Consensus 259 ~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~S 336 (611)
T KOG1173|consen 259 RFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFS 336 (611)
T ss_pred hHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHH
Confidence 677777888887765 3556666666677888889888877777777765 36667889999888888999999999998
Q ss_pred cCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcH
Q 044422 195 EMPVR---NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYI 271 (519)
Q Consensus 195 ~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 271 (519)
+...- =...|-.+...|.-.|..+.|+..+...-+. ++-...-+..+.--|.+.++.+-|.++|.+..... |.|+
T Consensus 337 Kat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dp 414 (611)
T KOG1173|consen 337 KATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDP 414 (611)
T ss_pred HHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcc
Confidence 87632 3468999999999999999999998776543 11122234446667888999999999999988764 6778
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 044422 272 QVANSLISMYCKCGNVEEAVYVFNNMHGK----------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFL 341 (519)
Q Consensus 272 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 341 (519)
.+.+-+.-.....+.+.+|...|+....+ -..+++.|..+|.+.+++++|+..+++..... +-|..|+.
T Consensus 415 lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~a 493 (611)
T KOG1173|consen 415 LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHA 493 (611)
T ss_pred hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHH
Confidence 88888888888889999999999876521 33568889999999999999999999988764 44888999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 044422 342 GVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLG 383 (519)
Q Consensus 342 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 383 (519)
++.-.|...|+++.|...|.+..- +.|+..+...++..+.
T Consensus 494 sig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 494 SIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 998899999999999999998876 6788877777776443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-08 Score=59.79 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=27.5
Q ss_pred hCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC
Q 044422 164 TGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197 (519)
Q Consensus 164 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 197 (519)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888774
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-05 Score=69.47 Aligned_cols=190 Identities=11% Similarity=0.069 Sum_probs=109.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCK 283 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (519)
...|.-.|.+.|+...|..-+++..+.. +-+..++..+...|-+.|..+.|.+.|....+.. +-+..+.|...--+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3344555666666666666666665543 2233455556666666666666666666665543 3445556666666666
Q ss_pred cCCHHHHHHHHHhcCC-C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 044422 284 CGNVEEAVYVFNNMHG-K----DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKV 358 (519)
Q Consensus 284 ~~~~~~a~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 358 (519)
.|++++|...|+.... | -..+|..+.-+..+.|+++.|...|++..+.... ...+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 6666666666665443 2 2345666666666666666666666666654322 22345555556666666666666
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 044422 359 YFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQ 397 (519)
Q Consensus 359 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (519)
+++.....+- ++....-..|+.-.+.|+.+.+.++=..
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6666655443 5666555556666666666665554333
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-06 Score=80.22 Aligned_cols=247 Identities=9% Similarity=0.009 Sum_probs=158.4
Q ss_pred HHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHH
Q 044422 143 TSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLE 222 (519)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~ 222 (519)
+.+--.|++..+..-.+ .....-..+.....-+.+++...|+.+.++.-...-..|.......+...+...++-+.++.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHH
Confidence 34445677777775444 22111112333455667788888988877766655556676666665555444345556665
Q ss_pred HHHHHHHCCCCCCHHHH-HHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-
Q 044422 223 LYRMMRNSMLEPNDFTF-TSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK- 300 (519)
Q Consensus 223 ~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~- 300 (519)
-+++....+..++..++ ......+...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+-
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55554444333233233 33335566789999888877542 45677778889999999999999999999863
Q ss_pred ChhHHHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 044422 301 DIVSWNSMIAGYA----QHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYS 376 (519)
Q Consensus 301 ~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 376 (519)
+..+...+..++. ..+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|..++.+..+.+ +-+..+..
T Consensus 162 eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~La 239 (290)
T PF04733_consen 162 EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLA 239 (290)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHH
Confidence 2233334444433 234689999999998664 66788889999999999999999999999987543 33566777
Q ss_pred HHHHHHHHcCCH-HHHHHHHHhC
Q 044422 377 CVVDLLGRAGLL-EEARDFIKQM 398 (519)
Q Consensus 377 ~li~~~~~~g~~-~~A~~~~~~~ 398 (519)
.++-+....|+. +.+.+++.++
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHhCCChhHHHHHHHHH
Confidence 778877888877 6778888887
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.3e-05 Score=66.40 Aligned_cols=158 Identities=8% Similarity=-0.039 Sum_probs=82.9
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhc
Q 044422 138 LSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQE 214 (519)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 214 (519)
...+.-.|.+.|+...|..-++..++.. +-+..+|..+...|.+.|+.+.|.+.|++.. +.+..+.|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3344455566666666666666666553 3334456666666666666666666665543 23445556666666666
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 044422 215 WQVDMCLELYRMMRNSMLEP-NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYV 293 (519)
Q Consensus 215 ~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 293 (519)
|++++|...|++......-| -..||..+.-+..+.|+.+.|...++...+.. +......-.+.....+.|++..|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 66666666666555432111 12355555555555566666666555555543 22233333444444444444444444
Q ss_pred HHhc
Q 044422 294 FNNM 297 (519)
Q Consensus 294 ~~~~ 297 (519)
++..
T Consensus 196 ~~~~ 199 (250)
T COG3063 196 LERY 199 (250)
T ss_pred HHHH
Confidence 4433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.3e-06 Score=79.07 Aligned_cols=215 Identities=11% Similarity=0.029 Sum_probs=152.7
Q ss_pred hcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHH
Q 044422 146 GSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLE 222 (519)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~ 222 (519)
.-.|+.-.+..-|+..++....++. .|--+..+|....+-++.+..|++.. +.++.+|..-...+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3457788888888887776533222 25556667888888888888887765 3466777777777777788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C
Q 044422 223 LYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--K 300 (519)
Q Consensus 223 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~ 300 (519)
-|++..... +-+...|..+.-+..+.+.+++++..|+..++. ++....+|+-....+...++++.|.+.|+...+ |
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 888877643 224566777777777888888888888888765 566778888888888888888888888886643 2
Q ss_pred C-------hh--HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 301 D-------IV--SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 301 ~-------~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
. +. .--.++-.-. .+++..|..++++..+...+ ....|..|...-...|++++|.++|++-..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 11 1122222222 37888888888888775433 456788888888888899999998888764
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.9e-08 Score=56.79 Aligned_cols=32 Identities=41% Similarity=0.675 Sum_probs=19.4
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 044422 266 GFFSYIQVANSLISMYCKCGNVEEAVYVFNNM 297 (519)
Q Consensus 266 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 297 (519)
|+.||..+|++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00027 Score=68.80 Aligned_cols=253 Identities=9% Similarity=-0.035 Sum_probs=160.6
Q ss_pred HHhcCCChhhHHHHHHHHHHhCCCChHHHHHH---HHHHHHhCCCHHHHHHHHccCCC--CC-hhHHHHHHHHHHhcCCh
Q 044422 144 SCGSTRNIRGGAPYQCLAIRTGFIANVYVGSS---LITLYSKCRVIIDAYKVFEEMPV--RN-VVSWTAIIAAFAQEWQV 217 (519)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~~~~ 217 (519)
.+...|+++.|..+++...+.. +.|...+.. ........+..+.+.+.++.... |+ ......+...+...|++
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~ 130 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY 130 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH
Confidence 4567899999999999988763 444444442 22222335666677777665332 22 23444566788999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCC-CCcH--HHHHHHHHHHHhcCCHHHHHHHH
Q 044422 218 DMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGF-FSYI--QVANSLISMYCKCGNVEEAVYVF 294 (519)
Q Consensus 218 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~~~~~~a~~~~ 294 (519)
++|...+++..+.. +.+...+..+...+...|++++|...++......- .++. ..|..+...+...|++++|..++
T Consensus 131 ~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 131 DRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998865 44566788888999999999999999998877532 2332 34567888999999999999999
Q ss_pred HhcCCCCh--hHHH------HHHHHHHHcCChHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 044422 295 NNMHGKDI--VSWN------SMIAGYAQHGLAVRAIDL--FEEMMKQRV--KPDAITFLGVISSCRHGGLVEEGKVYFDS 362 (519)
Q Consensus 295 ~~~~~~~~--~~~~------~li~~~~~~g~~~~A~~~--~~~m~~~~~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 362 (519)
+....+.. .... .++.-+...|....+.+. +........ ............++...|+.+.|...++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 210 DTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 98763221 2111 222333344433332222 111111111 11112223456677889999999999999
Q ss_pred HHHcCCC------c--CHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 363 MAKHGLK------P--ELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 363 m~~~~~~------p--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+...... . .....-...-++...|+.++|.+.+...
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~a 333 (355)
T cd05804 290 LKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPV 333 (355)
T ss_pred HHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8753222 0 1112222233456889999999988765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-05 Score=69.92 Aligned_cols=267 Identities=12% Similarity=0.089 Sum_probs=150.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHc
Q 044422 173 GSSLITLYSKCRVIIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTS-ILSACTG 248 (519)
Q Consensus 173 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~ 248 (519)
+++.+..+.+..+++.|++++..-.+ ++......+..+|-...++..|-..++++... .|...-|.. -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 44444445555666666665554432 24445555666666666666666666666443 343333321 2234445
Q ss_pred cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH--HHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHcCChHHHHHHH
Q 044422 249 SGALGQGRSAHCQTIRMGFFSYIQVANSLISM--YCKCGNVEEAVYVFNNMHG-KDIVSWNSMIAGYAQHGLAVRAIDLF 325 (519)
Q Consensus 249 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 325 (519)
.+.+.+|..+...|... +....-..-+.+ .-..+++..+..++++... .+..+.+.......+.|+++.|.+-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 56666666666555432 111111111111 1234566666666666653 44455555555556677777777777
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-------------cCH--------HHHHHHHHH--
Q 044422 326 EEMMKQ-RVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK-------------PEL--------DHYSCVVDL-- 381 (519)
Q Consensus 326 ~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-------------p~~--------~~~~~li~~-- 381 (519)
+...+- |..| ...|+..+. +.+.|+.+.|++...++.+.|++ ||. -.-+.++.+
T Consensus 168 qaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 766653 4443 345655543 33456667777777766655432 111 112233333
Q ss_pred -----HHHcCCHHHHHHHHHhCC----CCCCHHHH----------------HHHHHhhhcCCCCchhHHHHHHHHhccCC
Q 044422 382 -----LGRAGLLEEARDFIKQMP----IYPNAVIW----------------EAAESRLLLEPECAATHVQLANLYAGVRC 436 (519)
Q Consensus 382 -----~~~~g~~~~A~~~~~~~~----~~p~~~~~----------------~~~~~~~~~~~~~~~~~~~L~~~~~~~g~ 436 (519)
+.+.|+++.|.+-+-+|+ -..|.+|. ..+.-.+.++|--+.++..++-.||+..-
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHH
Confidence 457788888888888884 12233333 33444567788667899999999999999
Q ss_pred HHHHHHHHHH
Q 044422 437 WDQAARVRKL 446 (519)
Q Consensus 437 ~~~A~~~~~~ 446 (519)
++-|..++-+
T Consensus 326 f~lAADvLAE 335 (459)
T KOG4340|consen 326 FDLAADVLAE 335 (459)
T ss_pred HhHHHHHHhh
Confidence 9999988765
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.5e-05 Score=65.93 Aligned_cols=249 Identities=11% Similarity=-0.015 Sum_probs=157.1
Q ss_pred HHHHHhCCCHHHHHHHHccCC-C-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchH
Q 044422 177 ITLYSKCRVIIDAYKVFEEMP-V-RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQ 254 (519)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 254 (519)
++-+.-.|.+..++..-.... . .+...-..+-++|...|++.....- .+.. -.|....+..+-.....-++.++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---cccc-cCChHHHHHHHHHHhhCcchhHH
Confidence 344444666666665544433 2 3333444455667776765544332 2221 13334444333333333444333
Q ss_pred H-HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 044422 255 G-RSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRV 333 (519)
Q Consensus 255 a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 333 (519)
- .++.+.+.......+......-...|++.+++++|.+...... +....-.=+..+.+..+++-|.+.+++|.+..
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 3 3445555555555555555566677888899999999888733 33333333445677888999999999998642
Q ss_pred CCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 044422 334 KPDAITFLGVISSCRH----GGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA 409 (519)
Q Consensus 334 ~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 409 (519)
+..|.+.|..++.+ .+.+..|.-+|++|.+. ..|+..+.+....++...|++++|..+++..
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea----------- 233 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEA----------- 233 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHH-----------
Confidence 66788878777754 34688899999998863 5688889998888889999999999887755
Q ss_pred HHHhhhcCCCCchhHHHHHHHHhccCCHHHHH-HHHHHHHHC
Q 044422 410 AESRLLLEPECAATHVQLANLYAGVRCWDQAA-RVRKLMKDK 450 (519)
Q Consensus 410 ~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~-~~~~~m~~~ 450 (519)
+..++.++.+...++..-...|+..++. +.+.+.+..
T Consensus 234 ----L~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 234 ----LDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred ----HhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 4455666777777777777777765544 355555443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00054 Score=68.93 Aligned_cols=388 Identities=13% Similarity=0.045 Sum_probs=210.2
Q ss_pred hccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCC--C-CCchhhhhhhhhcCCcc
Q 044422 38 QISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTN--S-TFGSSNVFDQLLDTPVV 114 (519)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~ 114 (519)
.++..|++..+-+.|+.... ........|..+-..+...+. ...+..+...-.... + ......+.....-.+.+
T Consensus 332 al~~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~-~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~ 408 (799)
T KOG4162|consen 332 ALSRCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGS-DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLK 408 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhcc-chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchh
Confidence 34467888888888888652 222233344443333333322 223333322222222 2 22222333334444444
Q ss_pred CHHHHHHHHHHHhH--CC----CCCCHHHHHHHHHHHhcC----C-------ChhhHHHHHHHHHHhC-CCChHHHHHHH
Q 044422 115 DVEKLISMHHDLHR--ER----LKVDASFLSTAVTSCGST----R-------NIRGGAPYQCLAIRTG-FIANVYVGSSL 176 (519)
Q Consensus 115 ~~~~A~~~~~~m~~--~g----~~p~~~~~~~ll~~~~~~----~-------~~~~a~~~~~~~~~~g-~~~~~~~~~~l 176 (519)
..+++++.-.+... .+ ++| ..|..+.-+|+.. . ...++.+.++...+.+ -.|+...|-++
T Consensus 409 ~~eegldYA~kai~~~~~~~~~l~~--~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal 486 (799)
T KOG4162|consen 409 LVEEGLDYAQKAISLLGGQRSHLKP--RGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL 486 (799)
T ss_pred hhhhHHHHHHHHHHHhhhhhhhhhh--hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 56666665555544 11 333 3333333333221 1 1335666777776654 23444444333
Q ss_pred HHHHHhCCCHHHHHHHHccCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCC
Q 044422 177 ITLYSKCRVIIDAYKVFEEMP----VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNS-MLEPNDFTFTSILSACTGSGA 251 (519)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~ 251 (519)
-|+..++++.|.+...+.. ..++..|..+.-.+...+++.+|+.+.+..... |. |..-...-++.-...++
T Consensus 487 --q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~ 562 (799)
T KOG4162|consen 487 --QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFND 562 (799)
T ss_pred --HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhccc
Confidence 4666788888887776654 457788888888888888999988888766543 21 11111111111112333
Q ss_pred chHHHHHHHHHHH---------------------cCC-------CCcHHHHHHHHHHHHhcC---CHHHHHHHHHhcCCC
Q 044422 252 LGQGRSAHCQTIR---------------------MGF-------FSYIQVANSLISMYCKCG---NVEEAVYVFNNMHGK 300 (519)
Q Consensus 252 ~~~a~~~~~~~~~---------------------~~~-------~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~ 300 (519)
.+++......+.. .|. .....++..+.......+ ..+..+..+.....|
T Consensus 563 ~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~ 642 (799)
T KOG4162|consen 563 REEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGP 642 (799)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCC
Confidence 3333322221111 010 011122222222111100 011111111111112
Q ss_pred C------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc-CHH
Q 044422 301 D------IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKP-ELD 373 (519)
Q Consensus 301 ~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~ 373 (519)
+ ...|......+.+.+..++|...+.+..+.- +-....|......+...|..++|.+.|..... +.| ++.
T Consensus 643 ~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~ 719 (799)
T KOG4162|consen 643 DSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVP 719 (799)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcH
Confidence 2 2345566677788888888888887776542 33444555555667778888899988888876 345 455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 374 HYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
...++...+.+.|+..-|.. -..+..+++++|.|+.+|..|...+.+.|+.+.|.+.|....+.
T Consensus 720 s~~Ala~~lle~G~~~la~~-------------~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEK-------------RSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHHhCCcchHHH-------------HHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 67888888888886555544 11234557899999999999999999999999999999987654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00014 Score=74.82 Aligned_cols=202 Identities=12% Similarity=0.098 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044422 170 VYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGS 249 (519)
Q Consensus 170 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 249 (519)
+.+|+.+..+-.+.|.+.+|++-|-+. .|+..|-.++....+.|.+++-.+.+...++..-.|... +.||-+|++.
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt 1179 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKT 1179 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHh
Confidence 456777777777777777777766443 455677777788888888888777776666665556554 3577777777
Q ss_pred CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044422 250 GALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMM 329 (519)
Q Consensus 250 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (519)
+++.+.++++ ..|+......+.+-|...+.++.|.-+|. ++.-|..+...+...|++..|.+.-++..
T Consensus 1180 ~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1180 NRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred chHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7777665554 24666666677777777777777777776 55667888888888888888877655532
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 330 KQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 330 ~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+..||-.+-.+|...+.+.-| +|...++.....-..-++..|-..|-+++...+++..
T Consensus 1248 ------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1248 ------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred ------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 556888888888877766543 3344444455566777888888888888888888754
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00033 Score=68.97 Aligned_cols=314 Identities=13% Similarity=0.121 Sum_probs=156.3
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhc
Q 044422 136 SFLSTAVTSCGSTRNIRGGAPYQCLAIRT-GFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQE 214 (519)
Q Consensus 136 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 214 (519)
..|..-+......|++......|+..+.. .+.....+|...+...-..|-++-+.+++++..+-++..-+-.|..++..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 34445555555666666666666666543 12233345666666556666666666666666655555566666666666
Q ss_pred CChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHccCCch---HHHHHHHHHHHcCCCCc--HHHHHHHHHHHHh
Q 044422 215 WQVDMCLELYRMMRNSM------LEPNDFTFTSILSACTGSGALG---QGRSAHCQTIRMGFFSY--IQVANSLISMYCK 283 (519)
Q Consensus 215 ~~~~~a~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~ 283 (519)
+++++|-+.+....... .+.+...|..+....++.-+.- .+..++..+... -+| ...|.+|.+.|.+
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIR 260 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHH
Confidence 66666666665543221 1223333333333333322211 112222222111 122 2345555555555
Q ss_pred cCCHHHHHHHHHhcCCC---------------------------------------------------------------
Q 044422 284 CGNVEEAVYVFNNMHGK--------------------------------------------------------------- 300 (519)
Q Consensus 284 ~~~~~~a~~~~~~~~~~--------------------------------------------------------------- 300 (519)
.|.+++|.++|++....
T Consensus 261 ~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsV 340 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSV 340 (835)
T ss_pred hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 55555555555443210
Q ss_pred -------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 044422 301 -------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD------AITFLGVISSCRHGGLVEEGKVYFDSMAKHG 367 (519)
Q Consensus 301 -------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 367 (519)
++..|..-+. +..|+..+-...|.+..+. +.|- ...|..+.+-|-..|+++.|..+|++..+-.
T Consensus 341 lLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 1111111111 1234455555566555543 2221 2346666677777888888888888877643
Q ss_pred CCcC---HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHH---HHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHH
Q 044422 368 LKPE---LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAV---IWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAA 441 (519)
Q Consensus 368 ~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~ 441 (519)
.+-- ..+|..-...=.+..+++.|+++.++...-|... -|...+.+-..--.+...|..++..--..|-++...
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 3221 2345555555566777888888887763333221 110000000000022335555555556666777777
Q ss_pred HHHHHHHHCCCCC
Q 044422 442 RVRKLMKDKGLKT 454 (519)
Q Consensus 442 ~~~~~m~~~g~~~ 454 (519)
.+++++.+..+..
T Consensus 498 ~vYdriidLriaT 510 (835)
T KOG2047|consen 498 AVYDRIIDLRIAT 510 (835)
T ss_pred HHHHHHHHHhcCC
Confidence 7777777766543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00075 Score=74.63 Aligned_cols=303 Identities=9% Similarity=-0.047 Sum_probs=186.2
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhCC------CCh--HHHHHHHHHHHHhCCCHHHHHHHHccCCC----CCh----hH
Q 044422 140 TAVTSCGSTRNIRGGAPYQCLAIRTGF------IAN--VYVGSSLITLYSKCRVIIDAYKVFEEMPV----RNV----VS 203 (519)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~----~~ 203 (519)
.....+...|+++++...+....+.-- .+. ......+...+...|+++.|...+++... .+. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 334445567888888888877654310 111 11222333455678999999888876532 221 24
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc----CCC--C-cH
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNS----ML-EPNDFTFTSILSACTGSGALGQGRSAHCQTIRM----GFF--S-YI 271 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~ 271 (519)
.+.+...+...|++++|...+.+.... |- .+...++..+...+...|+++.|...+++.... +.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 456666778899999999988877542 21 111234556667788899999998888776542 221 1 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHH--H
Q 044422 272 QVANSLISMYCKCGNVEEAVYVFNNMHG------K--DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR--VKPDAI--T 339 (519)
Q Consensus 272 ~~~~~li~~~~~~~~~~~a~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~--t 339 (519)
..+..+...+...|++++|...+.+... + ....+..+...+...|+.++|...++...... ...... .
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 3455566677778999999888876532 1 12344445667788899999999888775421 111110 1
Q ss_pred H--HHHHHHHHccCCHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 044422 340 F--LGVISSCRHGGLVEEGKVYFDSMAKHGLKPE---LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRL 414 (519)
Q Consensus 340 ~--~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~ 414 (519)
. ...+..+...|+.+.|...+........... ...+..+..++...|+.++|...+++.--. -+..
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~---------~~~~ 724 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN---------ARSL 724 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------HHHh
Confidence 0 1112334557888888888777553211111 112345677788899999999888876100 0000
Q ss_pred hcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 415 LLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 415 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
........++..+..++.+.|+.++|...+.+..+..
T Consensus 725 g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 725 RLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 0011122356668899999999999999999988765
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0047 Score=61.17 Aligned_cols=111 Identities=8% Similarity=0.038 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhC------CCChHHHHHHHHHHHHhCCCHH--
Q 044422 116 VEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTG------FIANVYVGSSLITLYSKCRVII-- 187 (519)
Q Consensus 116 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~-- 187 (519)
++.++.++++..+- ++..-+--+..++..+++++|.+.+...+... -+.+-..|.-+-+..++.-+.-
T Consensus 154 Pets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~s 229 (835)
T KOG2047|consen 154 PETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQS 229 (835)
T ss_pred hHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcc
Confidence 35555555555432 33334455555566666666666655554221 1223334444444433332211
Q ss_pred -HHHHHHccCCC--CC--hhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 044422 188 -DAYKVFEEMPV--RN--VVSWTAIIAAFAQEWQVDMCLELYRMMRNS 230 (519)
Q Consensus 188 -~A~~~~~~m~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 230 (519)
....+++.+.. +| ...|+.|.+-|.+.|.+++|.++|++..+.
T Consensus 230 lnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 230 LNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred cCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 12223333321 12 235788888888888888888888776654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0014 Score=59.78 Aligned_cols=288 Identities=12% Similarity=0.064 Sum_probs=159.3
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHhCCCChHH-HHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHH---HHHHHhcCC
Q 044422 141 AVTSCGSTRNIRGGAPYQCLAIRTGFIANVY-VGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAI---IAAFAQEWQ 216 (519)
Q Consensus 141 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~~~ 216 (519)
+-+.+.-.|.+..|+.-|...++. .|+.+ ++-.-...|...|+-..|+.-|+...+..+..+.+- ...+.++|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 333444445555555555554432 22221 122222344445555555555544443222222222 234556666
Q ss_pred hHHHHHHHHHHHHCCCCC------------CH--HHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 044422 217 VDMCLELYRMMRNSMLEP------------ND--FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYC 282 (519)
Q Consensus 217 ~~~a~~~~~~m~~~g~~p------------~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (519)
++.|..-|+...+....- -. ......+..+...|+...|..+...+.+.. +-+...|..-..+|.
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHH
Confidence 666666666665542110 00 112223344556777778888887777764 556777777778888
Q ss_pred hcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------H------HH
Q 044422 283 KCGNVEEAVYVFNNMH---GKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGV-------I------SS 346 (519)
Q Consensus 283 ~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-------l------~~ 346 (519)
..|++..|+.-++... ..+..++--+-..+...|+.+.++...++..+ +.||....-.. . ..
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888887776555443 34566666666667777777777777777665 34554321111 1 11
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCcC-----HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCc
Q 044422 347 CRHGGLVEEGKVYFDSMAKHGLKPE-----LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECA 421 (519)
Q Consensus 347 ~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 421 (519)
....+++-.+..-.+...+.. |. ...+..+-.++...|++.+|.+...+. +..+|++.
T Consensus 279 ~ie~~~~t~cle~ge~vlk~e--p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev---------------L~~d~~dv 341 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNE--PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV---------------LDIDPDDV 341 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcC--CcccceeeeeeheeeecccccCCHHHHHHHHHHH---------------HhcCchHH
Confidence 223345555555555555432 33 223444556666677888887766544 45555666
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 422 ATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 422 ~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
.++..-..+|.....|++|+.-|+...+-
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 66666778888888888888887776554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3e-05 Score=75.21 Aligned_cols=222 Identities=10% Similarity=0.051 Sum_probs=165.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 044422 209 AAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVE 288 (519)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 288 (519)
.-+.+.|++.+|.-.|+...+.. +-+...|..|....+..++-..|+..+.+..+.. +-+..+..+|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34567888999999998887765 3467788889899999999999999998888875 567888888888999999888
Q ss_pred HHHHHHHhcCCCC-hhHHHHHH---------HHHHHcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 044422 289 EAVYVFNNMHGKD-IVSWNSMI---------AGYAQHGLAVRAIDLFEEMM-KQRVKPDAITFLGVISSCRHGGLVEEGK 357 (519)
Q Consensus 289 ~a~~~~~~~~~~~-~~~~~~li---------~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 357 (519)
.|...++.-.... ...|...- ..+.....+....++|-++. +.+.++|......|--.|--.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8988887653210 00000000 12222223445556665554 4454566667777777788899999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCH
Q 044422 358 VYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCW 437 (519)
Q Consensus 358 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~ 437 (519)
..|+..+... +-|..+||.|.-.++...+.++|...|.+ ++++.|.-.++...|...|...|.|
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r---------------ALqLqP~yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNR---------------ALQLQPGYVRVRYNLGISCMNLGAY 514 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHH---------------HHhcCCCeeeeehhhhhhhhhhhhH
Confidence 9999998743 33677899999999999999999987664 4677777778888899999999999
Q ss_pred HHHHHHHHHHH
Q 044422 438 DQAARVRKLMK 448 (519)
Q Consensus 438 ~~A~~~~~~m~ 448 (519)
++|.+.|=...
T Consensus 515 kEA~~hlL~AL 525 (579)
T KOG1125|consen 515 KEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHH
Confidence 99999877644
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0046 Score=60.63 Aligned_cols=393 Identities=11% Similarity=0.064 Sum_probs=204.8
Q ss_pred hhccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCH
Q 044422 37 KQISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDV 116 (519)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (519)
....+.+++++|....+.+.. ..+.+...+..-+.+.+..+.. +.+=.+...-... .......+-.++..-..+..
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky-~~ALk~ikk~~~~-~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKY-EDALKLIKKNGAL-LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHhccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHH-HHHHHHHHhcchh-hhcchhhHHHHHHHHHcccH
Confidence 345588999999999999873 3355555555555555555422 1111111111100 11111112344444445577
Q ss_pred HHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCCHHHHHHHHcc
Q 044422 117 EKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIA-NVYVGSSLITLYSKCRVIIDAYKVFEE 195 (519)
Q Consensus 117 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 195 (519)
++|+..++-..+. |..+...-...|.+.+++++|..+|+.+.+.+.+- +...-..++.+-.. -.+. +.+.
T Consensus 96 Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q~ 166 (652)
T KOG2376|consen 96 DEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQS 166 (652)
T ss_pred HHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHHh
Confidence 8888888733321 33455555667788899999999999987765331 22222222221111 1111 3333
Q ss_pred CCCCChhHHHHH---HHHHHhcCChHHHHHHHHHHHHCC-------------CCCCHH-HHHHHHHHHHccCCchHHHHH
Q 044422 196 MPVRNVVSWTAI---IAAFAQEWQVDMCLELYRMMRNSM-------------LEPNDF-TFTSILSACTGSGALGQGRSA 258 (519)
Q Consensus 196 m~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~g-------------~~p~~~-t~~~ll~~~~~~g~~~~a~~~ 258 (519)
.+.....+|..+ ...+...|++..|+++++...+.+ +.-... .-..|.-++-..|+-++|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 333223344333 334556777888888777762211 111111 122344455667778888887
Q ss_pred HHHHHHcCCCCcH----HHHHHHHHHHHhc---------------------------------------------CCHHH
Q 044422 259 HCQTIRMGFFSYI----QVANSLISMYCKC---------------------------------------------GNVEE 289 (519)
Q Consensus 259 ~~~~~~~~~~~~~----~~~~~li~~~~~~---------------------------------------------~~~~~ 289 (519)
+....+... +|. ..-|.|+..-... +..+.
T Consensus 247 y~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 247 YVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 777776642 222 1122222111111 11112
Q ss_pred HHHHHHhcCCCC-hhHHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-----
Q 044422 290 AVYVFNNMHGKD-IVSWNSMIAGYA--QHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFD----- 361 (519)
Q Consensus 290 a~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~----- 361 (519)
+.++-....... ...+.+++..+. +...+.++.+++....+....-........++.....|+++.|.+++.
T Consensus 326 ~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~ 405 (652)
T KOG2376|consen 326 VRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLES 405 (652)
T ss_pred HHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 222222111111 123333333322 223466677777766554322223455566677888999999999998
Q ss_pred ---HHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-------HHHH-----------HHHHH
Q 044422 362 ---SMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM--------PIYPN-------AVIW-----------EAAES 412 (519)
Q Consensus 362 ---~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-------~~~~-----------~~~~~ 412 (519)
.+.+.+..|.. ...++..+.+.++.+-|..++... ...+. ...+ ..+++
T Consensus 406 ~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 406 WKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 55555555544 445666677766655555554433 11111 1111 55677
Q ss_pred hhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHH
Q 044422 413 RLLLEPECAATHVQLANLYAGVRCWDQAARVRKL 446 (519)
Q Consensus 413 ~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 446 (519)
.++.+|.+..+...|+.+|++. +.+.|..+-+.
T Consensus 484 l~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 484 LVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 7888888888998899888887 46666665444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.28 E-value=7e-05 Score=68.20 Aligned_cols=183 Identities=14% Similarity=0.089 Sum_probs=100.5
Q ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hh---HH
Q 044422 235 NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSY---IQVANSLISMYCKCGNVEEAVYVFNNMHG--KD-IV---SW 305 (519)
Q Consensus 235 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~---~~ 305 (519)
....+..+...+...|+++.|...++.+.... +.+ ...+..+..+|.+.|++++|...++.+.+ |+ .. ++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34455556666666666666666666665542 111 13445556666666666666666666543 21 11 23
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 044422 306 NSMIAGYAQH--------GLAVRAIDLFEEMMKQRVKPDAI-TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYS 376 (519)
Q Consensus 306 ~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 376 (519)
..+..++.+. |+.++|.+.++.+.+. .|+.. ....+... +.... ... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~------~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHH------HHH--------HHHH
Confidence 3333334333 4555566666655543 22221 11111100 00000 000 0112
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 377 CVVDLLGRAGLLEEARDFIKQM-PIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
.+...|.+.|++.+|...++.. ...|+ .|..+.++..++.++...|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~-------------~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPD-------------TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCC-------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566788899999999988866 11121 23334577789999999999999999999887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0057 Score=60.65 Aligned_cols=329 Identities=13% Similarity=0.087 Sum_probs=188.7
Q ss_pred CchhhhhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHH
Q 044422 99 FGSSNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLIT 178 (519)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (519)
...+.++..+.+.. .++++|+..|.....-+ +-|...+--+--.-++.|+++..........+.. +-....|..+..
T Consensus 75 ~vCwHv~gl~~R~d-K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Av 151 (700)
T KOG1156|consen 75 HVCWHVLGLLQRSD-KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAV 151 (700)
T ss_pred chhHHHHHHHHhhh-hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHH
Confidence 33456665555544 38899999998887654 3355555544444457778887777777776652 334456778888
Q ss_pred HHHhCCCHHHHHHHHccCC-----CCChhHHHHH------HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHH
Q 044422 179 LYSKCRVIIDAYKVFEEMP-----VRNVVSWTAI------IAAFAQEWQVDMCLELYRMMRNSMLEPNDFTF-TSILSAC 246 (519)
Q Consensus 179 ~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~l------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~-~~ll~~~ 246 (519)
++.-.|+...|..+++... .++...|.-. .....+.|..+.|++.+..-... ..|...+ .+-...+
T Consensus 152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~ 229 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLL 229 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHH
Confidence 8888888888888887765 2444444332 23455677788888777555332 2233333 3344566
Q ss_pred HccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHhcCCC-------------------------
Q 044422 247 TGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN-VEEAVYVFNNMHGK------------------------- 300 (519)
Q Consensus 247 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~------------------------- 300 (519)
.+.+++++|..++..+.... +.+...|..+..++.+--+ .+....+|....+.
T Consensus 230 ~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vd 308 (700)
T KOG1156|consen 230 MKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVD 308 (700)
T ss_pred HHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHH
Confidence 78889999999998888874 3344444455555543333 33333555554320
Q ss_pred ----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCC----------CCCHH--HHHHHHHHHHccCCHH
Q 044422 301 ----------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMK----QRV----------KPDAI--TFLGVISSCRHGGLVE 354 (519)
Q Consensus 301 ----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~----------~p~~~--t~~~ll~~~~~~g~~~ 354 (519)
-+.++..+.+.|-.-...+-..++.-.+.. .|. +|... |+-.++..+-+.|+++
T Consensus 309 kyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~ 388 (700)
T KOG1156|consen 309 KYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE 388 (700)
T ss_pred HHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH
Confidence 011222222222211111111111111111 110 33333 3344566677778888
Q ss_pred HHHHHHHHHHHcCCCcCH-HHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHhhhcCCCCchhHHHHHHHH
Q 044422 355 EGKVYFDSMAKHGLKPEL-DHYSCVVDLLGRAGLLEEARDFIKQMP--IYPNAVIWEAAESRLLLEPECAATHVQLANLY 431 (519)
Q Consensus 355 ~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 431 (519)
.|...++...++ .|+. ..|..=.+.+...|.+++|..++++.. -.||...- .--+.-.
T Consensus 389 ~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~IN-----------------sKcAKYm 449 (700)
T KOG1156|consen 389 VALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAIN-----------------SKCAKYM 449 (700)
T ss_pred HHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHH-----------------HHHHHHH
Confidence 888887777664 3543 344455567777788888887777662 12333322 1235566
Q ss_pred hccCCHHHHHHHHHHHHHCCC
Q 044422 432 AGVRCWDQAARVRKLMKDKGL 452 (519)
Q Consensus 432 ~~~g~~~~A~~~~~~m~~~g~ 452 (519)
.++.+.++|.++.....+.|.
T Consensus 450 LrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHccccHHHHHHHHHhhhccc
Confidence 778888888888888877774
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0013 Score=58.76 Aligned_cols=323 Identities=11% Similarity=0.042 Sum_probs=188.0
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHH-HHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHH--HHHhCCCHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLST-AVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLIT--LYSKCRVIIDAYK 191 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~ 191 (519)
++..|-+.++.+... .|...-|-. -...+-+.+.+..|..+...|... ++...-..-+. .....+++..+..
T Consensus 59 ~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rs 133 (459)
T KOG4340|consen 59 EFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRS 133 (459)
T ss_pred HHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHH
Confidence 666677777776553 333333321 122334556667777776655432 22221111111 2234677777888
Q ss_pred HHccCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCC-
Q 044422 192 VFEEMP-VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNS-MLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFF- 268 (519)
Q Consensus 192 ~~~~m~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~- 268 (519)
+.++.+ +.+..+.+.......+.|+++.|++-|+...+. |..| ...|+..+ ++.+.|+.+.|.+...++.+.|+.
T Consensus 134 LveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 134 LVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred HHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhc
Confidence 888877 466667777777777888999999988887764 4444 45665544 455678888888888888877642
Q ss_pred ------------CcH---------------HHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHHcC
Q 044422 269 ------------SYI---------------QVANSLISMYCKCGNVEEAVYVFNNMHG-----KDIVSWNSMIAGYAQHG 316 (519)
Q Consensus 269 ------------~~~---------------~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g 316 (519)
||+ ..+|.-.-.+.+.++++.|.+.+-+|.. -|++|...+.-.- ..+
T Consensus 212 HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~ 290 (459)
T KOG4340|consen 212 HPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDA 290 (459)
T ss_pred CCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccC
Confidence 111 1222223335677899999999999974 3677766554322 234
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHH-cCCHHHHHHH
Q 044422 317 LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK-PELDHYSCVVDLLGR-AGLLEEARDF 394 (519)
Q Consensus 317 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~-~g~~~~A~~~ 394 (519)
++.+..+-+.-+.+... ....||..++-.||+..-++.|..++.+-...-.. .+...|+ |++++.. .-..++|++-
T Consensus 291 ~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KK 368 (459)
T KOG4340|consen 291 RPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKK 368 (459)
T ss_pred CccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHH
Confidence 55555555555555543 34568888888999999999998887654332111 2344444 4454443 3355666554
Q ss_pred HHhCC------------------CCCCHHHHHHHHHhhhcCCCCc----hhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 395 IKQMP------------------IYPNAVIWEAAESRLLLEPECA----ATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 395 ~~~~~------------------~~p~~~~~~~~~~~~~~~~~~~----~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
++.+. -..|. ..+.++++--.+.. .+...-.+.|.+..++..+.++|+.-.+.
T Consensus 369 L~~La~~l~~kLRklAi~vQe~r~~~dd---~a~R~ai~~Yd~~LE~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 369 LDGLAGMLTEKLRKLAIQVQEARHNRDD---EAIRKAVNEYDETLEKYLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 44330 00111 11111111111111 13334466788889999999999876654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00024 Score=75.71 Aligned_cols=205 Identities=12% Similarity=0.114 Sum_probs=157.9
Q ss_pred CC-HHHHHHHHHHHHccCCchHHHHHHHHHHHc-CCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-hhHHH
Q 044422 234 PN-DFTFTSILSACTGSGALGQGRSAHCQTIRM-GFFS---YIQVANSLISMYCKCGNVEEAVYVFNNMHGK-D-IVSWN 306 (519)
Q Consensus 234 p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~ 306 (519)
|| +..|-.-|......++.++|+++.+++... ++.- -..+|.++++.-..-|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 44 456777778888889999999988887653 2221 2346777777777777788888999888763 3 35688
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHH
Q 044422 307 SMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE---LDHYSCVVDLLG 383 (519)
Q Consensus 307 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~ 383 (519)
.|...|.+.+++++|.++++.|.+. +.-....|...++.+.+..+-+.|..++++..+. -|. .......+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 8889999999999999999999875 3345667888889999999999999999998874 343 334455666667
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCC
Q 044422 384 RAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNP 456 (519)
Q Consensus 384 ~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 456 (519)
+.|+.+++..+|+.. +...|.....|+.++..-.++|+.+.+..+|++....++.|..
T Consensus 1612 k~GDaeRGRtlfEgl---------------l~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGL---------------LSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred hcCCchhhHHHHHHH---------------HhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 889999988888865 3445666677888899999999999999999999999886654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00018 Score=63.11 Aligned_cols=150 Identities=10% Similarity=0.104 Sum_probs=109.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 044422 277 LISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEG 356 (519)
Q Consensus 277 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 356 (519)
-+-.|...|+++.+..-.+.+..+. . .+...++.+++...++...+.. +.|...|..+...|...|+++.|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456777777777654443332221 0 1123566777777777776653 44777888888899999999999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHH-HHcCC--HHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhc
Q 044422 357 KVYFDSMAKHGLKPELDHYSCVVDLL-GRAGL--LEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAG 433 (519)
Q Consensus 357 ~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 433 (519)
...+++..+.. +-+...+..+..++ ...|+ .++|.+++++. ++.+|.++.++..|...+..
T Consensus 93 ~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~a---------------l~~dP~~~~al~~LA~~~~~ 156 (198)
T PRK10370 93 LLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKA---------------LALDANEVTALMLLASDAFM 156 (198)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH---------------HHhCCCChhHHHHHHHHHHH
Confidence 99999988854 33667777777764 66676 47888777644 67788888899999999999
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 044422 434 VRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 434 ~g~~~~A~~~~~~m~~~g 451 (519)
.|++++|+..++++.+..
T Consensus 157 ~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 157 QADYAQAIELWQKVLDLN 174 (198)
T ss_pred cCCHHHHHHHHHHHHhhC
Confidence 999999999999998765
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0009 Score=63.19 Aligned_cols=223 Identities=10% Similarity=0.007 Sum_probs=128.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC-CchHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 044422 205 TAIIAAFAQEWQVDMCLELYRMMRNSMLEPND-FTFTSILSACTGSG-ALGQGRSAHCQTIRMGFFSYIQVANSLISMYC 282 (519)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (519)
..+-..+...+..++|+.+..++.+. .|+. ..|+.--.++...| +++++...++.+.+.. +-+..+|+.-...+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 33334455556677777777766654 3333 34444444444555 4567777777666654 334445554444444
Q ss_pred hcCC--HHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CC--
Q 044422 283 KCGN--VEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG---GL-- 352 (519)
Q Consensus 283 ~~~~--~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~---g~-- 352 (519)
+.|+ .+++..+++.+.+ .|..+|+...-++...|+++++++.++++.+.+.. |...|+.....+.+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 4454 2556666666554 35667777777777778888888888888776544 444555544444333 22
Q ss_pred --HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcC----CHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHH
Q 044422 353 --VEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAG----LLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQ 426 (519)
Q Consensus 353 --~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 426 (519)
.+....+..++.... +-+...|+.+...+...+ +..+|.+++.+ ++...|.++.++..
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~---------------~~~~~~~s~~al~~ 260 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE---------------VLSKDSNHVFALSD 260 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHH---------------hhcccCCcHHHHHH
Confidence 235556665655532 335566766666665522 23334444433 23455666677777
Q ss_pred HHHHHhccC------------------CHHHHHHHHHHH
Q 044422 427 LANLYAGVR------------------CWDQAARVRKLM 447 (519)
Q Consensus 427 L~~~~~~~g------------------~~~~A~~~~~~m 447 (519)
|+..|+... ..++|.++++.+
T Consensus 261 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 261 LLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 888887532 346788888887
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00059 Score=72.90 Aligned_cols=221 Identities=10% Similarity=-0.011 Sum_probs=158.9
Q ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHccCCC--------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 044422 167 IANVYVGSSLITLYSKCRVIIDAYKVFEEMPV--------RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFT 238 (519)
Q Consensus 167 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 238 (519)
+-+...|-..|......+++++|.+++++... .-.-.|.++++.-...|.-+...++|++..+.. . .-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHH
Confidence 33455788888888888899998888888752 234467788877777788888888888887742 1 1345
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C---ChhHHHHHHHHHH
Q 044422 239 FTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--K---DIVSWNSMIAGYA 313 (519)
Q Consensus 239 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~li~~~~ 313 (519)
|..|...|.+.+..++|.++++.|.+.- .-...+|...+..+.+.++-++|.+++.+..+ | .+....-.+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 7788888888999999999998887752 35677888888888888888888888887654 2 2333444445556
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHHcCCHHHH
Q 044422 314 QHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPEL--DHYSCVVDLLGRAGLLEEA 391 (519)
Q Consensus 314 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A 391 (519)
+.|+.+.+..+|+.....-.+ -...|+..++.-.+.|+.+.+..+|++....++.|.. ..|...+..=-..|+-..+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 788888888888887765322 4556888888888888888888888888887776643 3344445444455554433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0011 Score=58.36 Aligned_cols=247 Identities=11% Similarity=0.065 Sum_probs=152.3
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHH-
Q 044422 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMC- 220 (519)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a- 220 (519)
++-+--.|++..+...-....... -+...---+-++|...|.+.....-...-..+.....-.+...+..-++.+.-
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHH
Confidence 344455677776665554433221 22222223345566666654433322222222333333333333333443333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 044422 221 LELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK 300 (519)
Q Consensus 221 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 300 (519)
-.+.+.+.......+......-...|++.|++++|.+..... -+......=+..+.+..+++-|.+.+++|.+-
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334555555544445444455566789999999999887652 12333333445677888899999999999984
Q ss_pred -ChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHH
Q 044422 301 -DIVSWNSMIAGYAQ----HGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHY 375 (519)
Q Consensus 301 -~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 375 (519)
+..+.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++..... .-++.+.
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL 244 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETL 244 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHH
Confidence 45667767666654 45689999999999764 68899999999999999999999999999998654 3356666
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHhC
Q 044422 376 SCVVDLLGRAGLL-EEARDFIKQM 398 (519)
Q Consensus 376 ~~li~~~~~~g~~-~~A~~~~~~~ 398 (519)
..++-+-...|.. +-..+.+.++
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHH
Confidence 5565555555544 3334445544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00013 Score=72.85 Aligned_cols=228 Identities=9% Similarity=-0.011 Sum_probs=164.1
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC--CCChhHHHHHHHHHHhcCC
Q 044422 139 STAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP--VRNVVSWTAIIAAFAQEWQ 216 (519)
Q Consensus 139 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~~~ 216 (519)
..+...+...|-...|..+++.+ ..|..+|.+|...|+..+|..+..+-. +||+..|..+.+......-
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 34455555667777777777654 356778888888998888887776554 5778888888888888788
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 044422 217 VDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNN 296 (519)
Q Consensus 217 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 296 (519)
+++|.++.+..... .-..+.....+.+++.++.+.++.-.+.. +....+|-.+..+..+.++++.|.+.|..
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 88888888765332 11112222334788888888888777765 55677888888889999999999999987
Q ss_pred cCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCcCH
Q 044422 297 MHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHG-LKPEL 372 (519)
Q Consensus 297 ~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~~ 372 (519)
... | +...||.+-.+|.+.|+-.+|...+.+..+.+.. +...|...+-...+.|.++.|.+.+.++.+.. ..-|.
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~ 623 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDD 623 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccc
Confidence 764 4 4578999999999999999999999999887733 44556666666788899999999998887421 11244
Q ss_pred HHHHHHHHHHHH
Q 044422 373 DHYSCVVDLLGR 384 (519)
Q Consensus 373 ~~~~~li~~~~~ 384 (519)
.+...++....+
T Consensus 624 ~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 624 EVLLIIVRTVLE 635 (777)
T ss_pred hhhHHHHHHHHh
Confidence 555555554443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00058 Score=72.03 Aligned_cols=168 Identities=9% Similarity=0.045 Sum_probs=117.4
Q ss_pred CHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHH
Q 044422 134 DASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANV-YVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFA 212 (519)
Q Consensus 134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~ 212 (519)
+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+...++.+.+..+ .++..+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~ 94 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFS 94 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcc
Confidence 4557788888888899999999998866654 3333 3333333366666665554433 4455555
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 044422 213 QEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVY 292 (519)
Q Consensus 213 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 292 (519)
...++.-+..+.+.|...+ -+...+..+..+|-+.|+.+++..+|+++.+.. +-++.+.|.+...|... ++++|.+
T Consensus 95 ~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 95 QNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred cccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHH
Confidence 5566655555666666533 344577788888888888899988888888887 66788888888888888 8888888
Q ss_pred HHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 044422 293 VFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 293 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 331 (519)
++.+.. ..|...+++..+.++|.++...
T Consensus 171 m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 171 YLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHH-----------HHHHhhhcchHHHHHHHHHHhc
Confidence 877543 2366666777777777777664
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0045 Score=60.02 Aligned_cols=316 Identities=13% Similarity=0.078 Sum_probs=179.8
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCh-HHHHHHHHHHHHhCCCHHHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIAN-VYVGSSLITLYSKCRVIIDAYKVF 193 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~ 193 (519)
+++.|+.+|-+...... +|...|..-..+++..|+++.|.+=-..-.+ +.|+ ..-|+....++.-.|++++|+.-|
T Consensus 17 d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay 93 (539)
T KOG0548|consen 17 DFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAY 93 (539)
T ss_pred cHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence 78888888888776643 3777777777788888888777664444333 3444 346777777777788888888777
Q ss_pred ccCCC---CChhHHHHHHHHHHhc---------------------------------------------------CChHH
Q 044422 194 EEMPV---RNVVSWTAIIAAFAQE---------------------------------------------------WQVDM 219 (519)
Q Consensus 194 ~~m~~---~~~~~~~~li~~~~~~---------------------------------------------------~~~~~ 219 (519)
.+-.+ .+...++-+..++... .....
T Consensus 94 ~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~ 173 (539)
T KOG0548|consen 94 SEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMK 173 (539)
T ss_pred HHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHH
Confidence 76542 2223333333333110 00001
Q ss_pred HHHHHHHH-----HHCC-------CCC------------C----------HHHHHHHHHHHHccCCchHHHHHHHHHHHc
Q 044422 220 CLELYRMM-----RNSM-------LEP------------N----------DFTFTSILSACTGSGALGQGRSAHCQTIRM 265 (519)
Q Consensus 220 a~~~~~~m-----~~~g-------~~p------------~----------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 265 (519)
+.-.+... ...| ..| | ..-...+.++..+..+++.+.+-+....+.
T Consensus 174 a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el 253 (539)
T KOG0548|consen 174 ADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL 253 (539)
T ss_pred HHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH
Confidence 11110000 0000 011 0 011233344444455555555555555554
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHH-------HHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 044422 266 GFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKD---IVSWNS-------MIAGYAQHGLAVRAIDLFEEMMKQRVKP 335 (519)
Q Consensus 266 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~-------li~~~~~~g~~~~A~~~~~~m~~~~~~p 335 (519)
. -++.-++..-.+|...|.+..+...-....+.+ ..-|+. +..+|.+.++++.+...|.+.......|
T Consensus 254 ~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~ 331 (539)
T KOG0548|consen 254 A--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTP 331 (539)
T ss_pred h--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCH
Confidence 3 344445555566666666665555444433211 112222 3335556677777777777765544444
Q ss_pred CHHHHH-------------------------HHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHH
Q 044422 336 DAITFL-------------------------GVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEE 390 (519)
Q Consensus 336 ~~~t~~-------------------------~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 390 (519)
|..+=. .=...+.+.|++..|...|.++++.. +-|...|..-.-+|.+.|.+..
T Consensus 332 ~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~ 410 (539)
T KOG0548|consen 332 DLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPE 410 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHH
Confidence 432100 01223445677777777777777654 4456667777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 391 ARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 391 A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
|..= .+..++++|.....|..=+.++....+|++|.+.|++-.+..
T Consensus 411 aL~D---------------a~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 411 ALKD---------------AKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHH---------------HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7653 345667788888888888888888899999999998866543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.2e-06 Score=50.29 Aligned_cols=33 Identities=33% Similarity=0.781 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD 336 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 336 (519)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888887776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00051 Score=68.74 Aligned_cols=215 Identities=12% Similarity=0.075 Sum_probs=172.9
Q ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044422 167 IANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSAC 246 (519)
Q Consensus 167 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 246 (519)
+|--..-..+...+...|-..+|..+|++. ..|...|.+|...|+..+|..+..+-.+ -+||...|..+....
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 444445566778888999999999999965 5688899999999999999998877766 378889998888888
Q ss_pred HccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHH
Q 044422 247 TGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAID 323 (519)
Q Consensus 247 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 323 (519)
....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ --..+|-..-.+..+.++++.|.+
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 8777788888887765432 112222223446889999999986554 245788888888899999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 324 LFEEMMKQRVKPD-AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 324 ~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
.|..-... .|| ...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.+++|.+.+.++
T Consensus 541 aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 541 AFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99988763 454 5689999999999999999999999999887 556677888888899999999999999887
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00012 Score=60.60 Aligned_cols=96 Identities=10% Similarity=-0.083 Sum_probs=67.3
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 044422 301 DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVD 380 (519)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 380 (519)
++..+......+...|++++|...|+...... +.+...+..+..++...|++++|...|+...+.. +.+...+..+..
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~ 100 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGV 100 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 33344455666777788888888887777653 2356667777777777888888888888877643 346667777777
Q ss_pred HHHHcCCHHHHHHHHHhC
Q 044422 381 LLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 381 ~~~~~g~~~~A~~~~~~~ 398 (519)
++.+.|+.++|...|+..
T Consensus 101 ~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTA 118 (144)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 778888888888777654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.3e-06 Score=50.23 Aligned_cols=34 Identities=26% Similarity=0.551 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 044422 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPN 235 (519)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 235 (519)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0061 Score=55.80 Aligned_cols=329 Identities=7% Similarity=0.008 Sum_probs=225.9
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHH---HHHhcCCChhhHHHHHHHHHHhCCCChHHHH-HHHHHHHHhCCCHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAV---TSCGSTRNIRGGAPYQCLAIRTGFIANVYVG-SSLITLYSKCRVIIDAY 190 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~ 190 (519)
.+..|+..|...++- |+..|..+. ..|...|+-..|..-+...++. +||-..- -.-...+.+.|.++.|.
T Consensus 53 Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~ 126 (504)
T KOG0624|consen 53 QLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAE 126 (504)
T ss_pred hHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHH
Confidence 778888888888764 555555554 3466678888888888887764 6765432 22345678999999999
Q ss_pred HHHccCCCCCh----------------h--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCc
Q 044422 191 KVFEEMPVRNV----------------V--SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGAL 252 (519)
Q Consensus 191 ~~~~~m~~~~~----------------~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 252 (519)
.-|+.+.+.++ . .....+..+...|+...|+.....+.+.. +.|...|..-..+|...|.+
T Consensus 127 ~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~ 205 (504)
T KOG0624|consen 127 ADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEP 205 (504)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcH
Confidence 99998863221 1 12234556677899999999999998864 56888898899999999999
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh------HHHHH---------HHHHHHcCC
Q 044422 253 GQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIV------SWNSM---------IAGYAQHGL 317 (519)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~l---------i~~~~~~g~ 317 (519)
..|..=+....+.. ..+...+--+-..+...|+.+.++...++..+-|+. .|..+ +......++
T Consensus 206 k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~ 284 (504)
T KOG0624|consen 206 KKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKH 284 (504)
T ss_pred HHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99988887777665 445566666677888899999999999888763331 22211 233456788
Q ss_pred hHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHHcCCHHHHHH
Q 044422 318 AVRAIDLFEEMMKQRVKPDAIT---FLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE-LDHYSCVVDLLGRAGLLEEARD 393 (519)
Q Consensus 318 ~~~A~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 393 (519)
+-++++..+...+........+ +..+-.++...|.+.+|.+.-.+.++ +.|+ ..++.--..+|.-...+++|..
T Consensus 285 ~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~ 362 (504)
T KOG0624|consen 285 WTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIH 362 (504)
T ss_pred HHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 8888888888777643322333 44455566778899999999999887 4565 7788888889998899999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHhhhcCCC--CchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCC
Q 044422 394 FIKQM-PIYP-NAVIWEAAESRLLLEPE--CAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNP 456 (519)
Q Consensus 394 ~~~~~-~~~p-~~~~~~~~~~~~~~~~~--~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 456 (519)
=|+.. ...+ |...-.-++++-.+... ....|- |-+--+.-.-.+-.+.|++|-. .+.||.
T Consensus 363 dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYK--ILGVkRnAsKqEI~KAYRKlAq-kWHPDN 426 (504)
T KOG0624|consen 363 DYEKALELNESNTRAREGLERAKRLKKQSGKRDYYK--ILGVKRNASKQEITKAYRKLAQ-KWHPDN 426 (504)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHH--HhhhcccccHHHHHHHHHHHHH-hcCCcc
Confidence 99877 3333 33333334444333322 123343 3334455556677788888754 467776
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00026 Score=70.52 Aligned_cols=115 Identities=18% Similarity=0.261 Sum_probs=82.2
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChh--HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 044422 278 ISMYCKCGNVEEAVYVFNNMHGKDIV--SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEE 355 (519)
Q Consensus 278 i~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 355 (519)
+.+......+.+|+.+++.++..++. -|..+..-|...|+++.|.++|-+. + .++-.|..|.+.|+++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccHHH
Confidence 44555667788888888877765443 4677778888999999999888764 2 24556778889999998
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH
Q 044422 356 GKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNA 404 (519)
Q Consensus 356 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 404 (519)
|.++-.+.. |-..+...|-.-..-+-+.|++.+|+++|-.++ .|+.
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~ 855 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDK 855 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchH
Confidence 888766543 334455666666667778888888888887775 4554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0054 Score=67.87 Aligned_cols=285 Identities=11% Similarity=0.062 Sum_probs=185.1
Q ss_pred cCHHHHHHHHHHHhHCCC------CCCH--HHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCh----HHHHHHHHHHHH
Q 044422 114 VDVEKLISMHHDLHRERL------KVDA--SFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIAN----VYVGSSLITLYS 181 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~------~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~ 181 (519)
+++++|...+......-- .+.. .....+-..+...|+++.|...++...+.--..+ ....+.+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 478888888877654210 1111 1122223345678999999999998876311112 134566667778
Q ss_pred hCCCHHHHHHHHccCCC-------CC--hhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHH
Q 044422 182 KCRVIIDAYKVFEEMPV-------RN--VVSWTAIIAAFAQEWQVDMCLELYRMMRN----SMLE--P-NDFTFTSILSA 245 (519)
Q Consensus 182 ~~g~~~~A~~~~~~m~~-------~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~--p-~~~t~~~ll~~ 245 (519)
..|++++|...+++... +. ..+++.+...+...|++++|...+++... .+.. + ....+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 89999999998887651 11 23456667788899999999999887654 2221 1 23344555666
Q ss_pred HHccCCchHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CC-hhHH-----HHHHHH
Q 044422 246 CTGSGALGQGRSAHCQTIRM----GFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG----KD-IVSW-----NSMIAG 311 (519)
Q Consensus 246 ~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~-~~~~-----~~li~~ 311 (519)
+...|++++|...+...... +.......+..+...+...|+.+.|.+.+..... .. ...+ ...+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 77789999999988877553 2111234555667788899999999988877632 11 1111 112244
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHH----cCCCcC-HHHHHHHHHHHH
Q 044422 312 YAQHGLAVRAIDLFEEMMKQRVKPDA---ITFLGVISSCRHGGLVEEGKVYFDSMAK----HGLKPE-LDHYSCVVDLLG 383 (519)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~~~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~ 383 (519)
+...|+.+.|...+............ .....+..++...|+.++|...++.... .|..++ ..+...+..++.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 55688999999988775432211111 1134566678889999999999998874 233332 345666778889
Q ss_pred HcCCHHHHHHHHHhC
Q 044422 384 RAGLLEEARDFIKQM 398 (519)
Q Consensus 384 ~~g~~~~A~~~~~~~ 398 (519)
+.|+.++|...+.+.
T Consensus 743 ~~G~~~~A~~~L~~A 757 (903)
T PRK04841 743 QQGRKSEAQRVLLEA 757 (903)
T ss_pred HcCCHHHHHHHHHHH
Confidence 999999999988876
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00029 Score=61.79 Aligned_cols=115 Identities=9% Similarity=0.086 Sum_probs=58.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHhcCC--HHHHH
Q 044422 215 WQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISM-YCKCGN--VEEAV 291 (519)
Q Consensus 215 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~--~~~a~ 291 (519)
++.+++...+++..+.. +.|...|..+...|...|++++|...++...+.. +.+..++..+..+ +...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34444444444444432 3344555555555555555555555555555543 3344444444443 234444 35555
Q ss_pred HHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 044422 292 YVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 292 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 331 (519)
+++++..+ .+..++..+...+.+.|++++|...|+++.+.
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555443 13445555555555666666666666665554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0077 Score=59.80 Aligned_cols=325 Identities=14% Similarity=0.110 Sum_probs=205.2
Q ss_pred hhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 044422 105 FDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR 184 (519)
Q Consensus 105 ~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 184 (519)
..++.-...++-++|.+....-.+..++ +.+.|..+.-.+....++++|...|..++..+ +-|...+.-+--.-++.|
T Consensus 46 mkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmR 123 (700)
T KOG1156|consen 46 MKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMR 123 (700)
T ss_pred hccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHH
Confidence 3444445566888888887776664433 66778877777777889999999999988765 456677776666667777
Q ss_pred CHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHH------HHHccCCchH
Q 044422 185 VIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSM-LEPNDFTFTSILS------ACTGSGALGQ 254 (519)
Q Consensus 185 ~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~------~~~~~g~~~~ 254 (519)
+++.......... ......|..+..++.-.|+...|..+++...+.. -.|+...|..... .....|..++
T Consensus 124 d~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ 203 (700)
T KOG1156|consen 124 DYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQK 203 (700)
T ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 7777666655554 3456688888999999999999999999997764 2466666544333 3456777777
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHH-HHHHHHcCChHHHH-HHH-----
Q 044422 255 GRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--KDIVSWNSM-IAGYAQHGLAVRAI-DLF----- 325 (519)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~-~~~----- 325 (519)
|.+.+..-... +......-.+-...+.+.+++++|..+|..+.. ||-..|+.. ..++.+-.+.-++. .+|
T Consensus 204 ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 204 ALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 77766554432 223334445667788899999999999998876 444444433 33333222222222 333
Q ss_pred -----------------------------HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH--cCC------
Q 044422 326 -----------------------------EEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK--HGL------ 368 (519)
Q Consensus 326 -----------------------------~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~--~~~------ 368 (519)
..+.+.|+++ +|..+..-|-.....+-..++...+.. .|-
T Consensus 283 ~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 283 KYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred cCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 3333444433 223333222222222211122222211 111
Q ss_pred ------CcCHHHHH--HHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHH
Q 044422 369 ------KPELDHYS--CVVDLLGRAGLLEEARDFIKQM-PIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQ 439 (519)
Q Consensus 369 ------~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~ 439 (519)
+|++..|+ .++..+-+.|+++.|..+++.. .-.|+. +..|..-.+++...|.+++
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTl----------------iEly~~KaRI~kH~G~l~e 423 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTL----------------IELYLVKARIFKHAGLLDE 423 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchH----------------HHHHHHHHHHHHhcCChHH
Confidence 45555444 4777888889999999888865 323332 2345555799999999999
Q ss_pred HHHHHHHHHHCC
Q 044422 440 AARVRKLMKDKG 451 (519)
Q Consensus 440 A~~~~~~m~~~g 451 (519)
|..++++..+..
T Consensus 424 Aa~~l~ea~elD 435 (700)
T KOG1156|consen 424 AAAWLDEAQELD 435 (700)
T ss_pred HHHHHHHHHhcc
Confidence 999999987665
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00034 Score=68.12 Aligned_cols=248 Identities=13% Similarity=0.077 Sum_probs=162.1
Q ss_pred HhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHH
Q 044422 145 CGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCL 221 (519)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~ 221 (519)
+.+.|++..|.-.|+..++.. +-+...|-.|.......++-..|+..+.+..+ .|..+.-+|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 456788888888888887764 45677888888888888888888888877664 34556666667788888888888
Q ss_pred HHHHHHHHCCCC--------CCHHHHHHHHHHHHccCCchHHHHHHH-HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 044422 222 ELYRMMRNSMLE--------PNDFTFTSILSACTGSGALGQGRSAHC-QTIRMGFFSYIQVANSLISMYCKCGNVEEAVY 292 (519)
Q Consensus 222 ~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 292 (519)
++|++-.....+ ++...-.. ........+....++|- .....+..+|..++..|.-.|--.|++++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 888776543210 00000000 11111122233344443 33445555777788888888888888888888
Q ss_pred HHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHH--
Q 044422 293 VFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD--AITFLGVISSCRHGGLVEEGKVYFDSMAK-- 365 (519)
Q Consensus 293 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-- 365 (519)
.|+.... | |...||.|...++...+..+|+..|.+..+- +|. ..-|| |.-+|...|.+++|...|-..+.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYN-LGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehh-hhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 8887653 3 6678888888888888888888888888764 554 23344 44467888888888877766542
Q ss_pred -c------CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 366 -H------GLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 366 -~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
. +..++...|..|=.++.-.++.|-+.+....+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~~~ 568 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAPSR 568 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcccc
Confidence 1 11223456777766777777776565554433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0025 Score=60.28 Aligned_cols=201 Identities=9% Similarity=-0.006 Sum_probs=113.7
Q ss_pred HhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-CHHHHHHHHccCCC---CChhHHHHHHHHHHhcCCh--H
Q 044422 145 CGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR-VIIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQV--D 218 (519)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~--~ 218 (519)
+...+..++|..+...+++.. +-+..+|+..-.++...| ++++++..++++.. .+..+|+...-.+.+.|+. +
T Consensus 47 l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 334556677777777777653 223345665555566666 56777777777652 3444566554444455542 5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc---CC----HHHHH
Q 044422 219 MCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC---GN----VEEAV 291 (519)
Q Consensus 219 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~----~~~a~ 291 (519)
+++.+++++.+.. +-|..+|+...-++...|+++++.+.++.+.+.+ +.+...|+.....+.+. |. .++..
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 6677777777654 3356677777777777777888888887777765 34445555544444333 11 13344
Q ss_pred HHHHhcCC---CChhHHHHHHHHHHHc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044422 292 YVFNNMHG---KDIVSWNSMIAGYAQH----GLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRH 349 (519)
Q Consensus 292 ~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 349 (519)
.+..+... .|..+|+-+...+... ++..+|.+.+.+..+.+ ..+......|++.|+.
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 44433322 2556666666666552 23344666666554432 2244455555555553
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=6e-06 Score=49.24 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 044422 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEP 234 (519)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 234 (519)
.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.004 Score=59.86 Aligned_cols=179 Identities=12% Similarity=0.016 Sum_probs=124.4
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 044422 269 SYIQVANSLISMYCKCGNVEEAVYVFNNMHG-KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD-AITFLGVISS 346 (519)
Q Consensus 269 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~ 346 (519)
|+...+...+.+......-..+...+.+-.+ .....+--..-.+...|++++|+..++.+... .|| ........+.
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i 349 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDI 349 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4555555555554444333333333333333 23333333444566788899999999988775 444 4444555667
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHhhhcCCCCchh
Q 044422 347 CRHGGLVEEGKVYFDSMAKHGLKPE-LDHYSCVVDLLGRAGLLEEARDFIKQM--PIYPNAVIWEAAESRLLLEPECAAT 423 (519)
Q Consensus 347 ~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~ 423 (519)
+.+.++.++|.+.++.+... .|+ ....-.+..+|.+.|+..+|..++++. ...-|...|..+-++.....+....
T Consensus 350 ~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 350 LLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence 88889999999999998874 465 455566788899999999999888876 3344667777777777777777778
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 424 HVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 424 ~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
......+|.-.|+++.|...+.+.+++.
T Consensus 428 ~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 428 LLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 8888889999999999999888887764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00097 Score=67.51 Aligned_cols=255 Identities=11% Similarity=0.049 Sum_probs=128.6
Q ss_pred CHHHHHHHHHH--HhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC-C----------C
Q 044422 134 DASFLSTAVTS--CGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV-R----------N 200 (519)
Q Consensus 134 ~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~----------~ 200 (519)
|..|--.++.. |...|+.+.|.+-.+.++ +..+|..+.++|.+..+++-|.-.+-.|.. + +
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 44444444433 445577777666655443 345677777777777777777766666651 0 1
Q ss_pred h-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 044422 201 V-VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLIS 279 (519)
Q Consensus 201 ~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 279 (519)
. ..=.-..-.....|..++|+.+|.+-+. |..|=+.|-..|.+++|.++-+.--+..+ ..||.....
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAK 866 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHH
Confidence 1 1111112223455667777777766544 22333445566777777665543222211 234444555
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 044422 280 MYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVY 359 (519)
Q Consensus 280 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 359 (519)
.+-..++.+.|++.|++...+-...+..|.. ++.....+.+.+. |...|..-...+...|+++.|+.+
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e------~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKE------YPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHh------ChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHH
Confidence 5555666777777776654332221111110 1111111222221 223344444444556666666666
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHH
Q 044422 360 FDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQ 439 (519)
Q Consensus 360 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~ 439 (519)
|...++ |-++++..|-.|+.++|-.+-++-+ |..+...|.+.|-..|++.+
T Consensus 935 Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg--------------------d~AAcYhlaR~YEn~g~v~~ 985 (1416)
T KOG3617|consen 935 YSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG--------------------DKAACYHLARMYENDGDVVK 985 (1416)
T ss_pred HHHhhh---------hhhheeeEeeccCchHHHHHHHhcc--------------------cHHHHHHHHHHhhhhHHHHH
Confidence 665544 4445555555666666666555543 11233335566666666666
Q ss_pred HHHHHHHH
Q 044422 440 AARVRKLM 447 (519)
Q Consensus 440 A~~~~~~m 447 (519)
|..+|-+.
T Consensus 986 Av~FfTrA 993 (1416)
T KOG3617|consen 986 AVKFFTRA 993 (1416)
T ss_pred HHHHHHHH
Confidence 66665554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0015 Score=57.62 Aligned_cols=156 Identities=15% Similarity=0.069 Sum_probs=120.7
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcC
Q 044422 240 TSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHG 316 (519)
Q Consensus 240 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g 316 (519)
..+-..+...|+-+....+........ +.+....+.++....+.|++..|...|.+... +|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 556666777777777777666644332 45666777788888999999999999988765 47789999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044422 317 LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIK 396 (519)
Q Consensus 317 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (519)
++++|..-|.+..+-... +...++.+...+.-.|+.+.|..++......+ .-|...-..+.......|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 999999999888875322 45567777777888899999999998888754 2366666778888899999999998876
Q ss_pred hC
Q 044422 397 QM 398 (519)
Q Consensus 397 ~~ 398 (519)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 54
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.014 Score=57.31 Aligned_cols=212 Identities=9% Similarity=0.038 Sum_probs=132.2
Q ss_pred ccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCCHHHHHH
Q 044422 113 VVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGF-IANVYVGSSLITLYSKCRVIIDAYK 191 (519)
Q Consensus 113 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~ 191 (519)
.+++++|+....+....+ +-|...+..=+-+..+.+.++.|..+... .+. ..+...+--=.-+..+.+..++|+.
T Consensus 25 ~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~~fEKAYc~Yrlnk~Dealk 100 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSFFFEKAYCEYRLNKLDEALK 100 (652)
T ss_pred chHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchhhHHHHHHHHHcccHHHHHH
Confidence 348999999999998765 44566666666678888999988855432 221 1111111111234457899999999
Q ss_pred HHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCc
Q 044422 192 VFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEP-NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSY 270 (519)
Q Consensus 192 ~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 270 (519)
.++...+.+..+...-...+-+.+++++|+++|+.+.+++..- +...-..++.+-... .+ +.+......|.
T Consensus 101 ~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~----~~~q~v~~v~e 172 (652)
T KOG2376|consen 101 TLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV----QLLQSVPEVPE 172 (652)
T ss_pred HHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH----HHHHhccCCCc
Confidence 9996666565566777778889999999999999997766421 122222222221111 11 12333333332
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCC-----h-----hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 271 --IQVANSLISMYCKCGNVEEAVYVFNNMH--------GKD-----I-----VSWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 271 --~~~~~~li~~~~~~~~~~~a~~~~~~~~--------~~~-----~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
-..+-.....++..|++.+|++++.... ..| . ..--.+.-.+-..|+-.+|..++...++
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 1222233456778899999999998872 111 1 1122345567789999999999999988
Q ss_pred CCCCCCH
Q 044422 331 QRVKPDA 337 (519)
Q Consensus 331 ~~~~p~~ 337 (519)
.. .+|.
T Consensus 253 ~~-~~D~ 258 (652)
T KOG2376|consen 253 RN-PADE 258 (652)
T ss_pred hc-CCCc
Confidence 75 4454
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.07 E-value=8e-06 Score=48.68 Aligned_cols=33 Identities=36% Similarity=0.600 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKP 335 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 335 (519)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666655
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00053 Score=62.39 Aligned_cols=61 Identities=8% Similarity=-0.119 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHccCCC--CC-h---hHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 044422 170 VYVGSSLITLYSKCRVIIDAYKVFEEMPV--RN-V---VSWTAIIAAFAQEWQVDMCLELYRMMRNS 230 (519)
Q Consensus 170 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 230 (519)
...+-.+...+.+.|+++.|...|+++.. |+ . .++..+..++.+.|++++|...++++.+.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34455555556666666666666665542 21 1 24455555666666666666666666543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.3e-05 Score=61.31 Aligned_cols=109 Identities=9% Similarity=0.016 Sum_probs=90.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 044422 323 DLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYP 402 (519)
Q Consensus 323 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 402 (519)
.++++..+. .|+. +..+..++...|++++|...|+...... +.+...|..+..++.+.|++++|...|+..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A---- 84 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHA---- 84 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHH----
Confidence 345554442 3443 5556778889999999999999998854 447788899999999999999999988755
Q ss_pred CHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 403 NAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
+.++|.++.++..+..++...|++++|+..|++..+..
T Consensus 85 -----------l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 85 -----------LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred -----------HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 57889999999999999999999999999999987754
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00031 Score=67.71 Aligned_cols=128 Identities=14% Similarity=0.124 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044422 272 QVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGG 351 (519)
Q Consensus 272 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 351 (519)
..-.+|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++++..+.. +-|......-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 4556667777778889999999999888777777778888888899999999999888652 335555665666788999
Q ss_pred CHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 044422 352 LVEEGKVYFDSMAKHGLKPE-LDHYSCVVDLLGRAGLLEEARDFIKQMPIYP 402 (519)
Q Consensus 352 ~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 402 (519)
+.+.|..+.+++.+. .|+ ..+|..|..+|...|+++.|+..++.++..+
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999999984 464 5589999999999999999999999997544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00098 Score=66.60 Aligned_cols=162 Identities=16% Similarity=0.205 Sum_probs=76.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 044422 214 EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYV 293 (519)
Q Consensus 214 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 293 (519)
..+|.+|+.+++.+..... -..-|..+...|+..|+++.|+++|-+. ..++-.|.+|.+.|++..|.++
T Consensus 745 akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHH
Confidence 3444444444444433321 1223444555555555555555555321 1234445555566666655555
Q ss_pred HHhcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC
Q 044422 294 FNNMHGK--DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE 371 (519)
Q Consensus 294 ~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 371 (519)
-.+...| ....|-+-..-+-+.|++.+|.++|-... .|+. .|..|-+.|..+...++.++-.- ..-
T Consensus 814 a~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l 881 (1636)
T KOG3616|consen 814 AEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHL 881 (1636)
T ss_pred HHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh---hhh
Confidence 5555443 22334333344445555555555443321 2221 23444455555444444433211 111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 372 LDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
..|...+..-|-..|+...|++-|-+.
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 234445566666777777777766555
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0017 Score=65.81 Aligned_cols=225 Identities=9% Similarity=0.038 Sum_probs=141.0
Q ss_pred cCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHh-C--------CCChHHHHHHHHHHHHhCC
Q 044422 114 VDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRT-G--------FIANVYVGSSLITLYSKCR 184 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g--------~~~~~~~~~~li~~~~~~g 184 (519)
++.+.|++-.+-.. +...|..+.+.|.+.++++-|.--+..|... | ..|+ .+-..+.-.....|
T Consensus 742 G~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred ccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 37777777666554 4577999999999998888877666665421 1 1222 22223333445678
Q ss_pred CHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 185 VIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 185 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
.+++|..++.+-+. |..|=..|-..|.|++|+++-+.=-.- .=..||..-...+-..++.+.|.+.|+....
T Consensus 815 MlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~ 886 (1416)
T KOG3617|consen 815 MLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYEKAGV 886 (1416)
T ss_pred hHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHHhcCC
Confidence 89999999988765 444556777889999998886443221 2235666666666667778777777654321
Q ss_pred cC-------------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 044422 265 MG-------------------FFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLF 325 (519)
Q Consensus 265 ~~-------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 325 (519)
.. -..|...|.-....+-..|+++.|+.+|...+ -|-+++...|-.|+.++|-++-
T Consensus 887 hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA 961 (1416)
T KOG3617|consen 887 HAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIA 961 (1416)
T ss_pred hHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchHHHHHH
Confidence 10 01223333444444445566777776666433 3566666677777777777766
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 326 EEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 326 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
++- | |....-.|.+.|...|++.+|..+|.+..
T Consensus 962 ~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 962 EES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred Hhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 552 2 44555566777777888888877777655
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00024 Score=68.40 Aligned_cols=126 Identities=11% Similarity=0.082 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044422 171 YVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG 250 (519)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 250 (519)
..-.+|+..+...++++.|+.+|+++.+.++.....++..+...++-.+|.+++++..+.. +-+...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445666667777888888888888887777777778888888888888888888887643 345666666677788888
Q ss_pred CchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 251 ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
+.+.|..+.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888764 4556688888888888888888888888765
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0016 Score=57.45 Aligned_cols=152 Identities=13% Similarity=0.014 Sum_probs=82.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044422 174 SSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG 250 (519)
Q Consensus 174 ~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 250 (519)
..+-..+.-.|+-+.+..+..... ..|....+..+....+.|++..|+..|.+...-. ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 334444555555555555555433 2334445556666666666666666666664432 455666666666666666
Q ss_pred CchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 044422 251 ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEE 327 (519)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 327 (519)
++++|..-|.+..+.. +.+...++.+.-.|.-.|+++.|..++..... .|...-..+.......|++++|.++...
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 6666666666655542 23344555555555555556555555554331 2444445555555555555555555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.012 Score=61.30 Aligned_cols=232 Identities=15% Similarity=0.111 Sum_probs=157.3
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHH
Q 044422 184 RVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTI 263 (519)
Q Consensus 184 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 263 (519)
+.++.|.++-++..+ +..|..+..+-.+.|...+|++-|-+. -|...|..++..+.+.|.+++-.+.+....
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445555555555444 457889999999999999998877332 255678999999999999999999998888
Q ss_pred HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044422 264 RMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGV 343 (519)
Q Consensus 264 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 343 (519)
+..-.|.+. +.||-+|++.+++.+.++++. .||......+.+-|...|.++.|.-+|... ..|..|
T Consensus 1161 kk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~L 1226 (1666)
T KOG0985|consen 1161 KKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKL 1226 (1666)
T ss_pred HhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHH
Confidence 776566543 678889999999888777654 577777888888899999998888777654 347777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHH-----------------HHHHHhCCCCCCHHH
Q 044422 344 ISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEA-----------------RDFIKQMPIYPNAVI 406 (519)
Q Consensus 344 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A-----------------~~~~~~~~~~p~~~~ 406 (519)
...+...|++..|...-++. -+..+|.-+..+|...+.+.-| .++|+.-|.- ...
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyF--eEl 1298 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYF--EEL 1298 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcH--HHH
Confidence 88888888888776654432 3667787777777665544332 2233322210 001
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHH
Q 044422 407 WEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKL 446 (519)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 446 (519)
...++.++.++...-+.|..|...|.+-+ +++..+-++.
T Consensus 1299 Isl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~L 1337 (1666)
T KOG0985|consen 1299 ISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKL 1337 (1666)
T ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHH
Confidence 13345555666666666666666666553 4444444443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0025 Score=66.58 Aligned_cols=130 Identities=8% Similarity=-0.073 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHH
Q 044422 134 DASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV---RNVVSWTAIIAA 210 (519)
Q Consensus 134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 210 (519)
++..+-.|.....+.|..++|..+++...+.. +-+......+...+.+.+++++|....++... .+....+.+..+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 45555555555555555555555555555431 22333445555555555555555555555542 223344445555
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc
Q 044422 211 FAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRM 265 (519)
Q Consensus 211 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 265 (519)
+.+.|++++|..+|++....+ +-+..++..+..++-..|+.++|...|....+.
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555666655555555422 122445555555555555555555555555543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.035 Score=56.49 Aligned_cols=326 Identities=13% Similarity=0.062 Sum_probs=186.3
Q ss_pred HHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC----
Q 044422 123 HHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV---- 198 (519)
Q Consensus 123 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---- 198 (519)
+.++....++-|+..|-.+.-+....|+++.+-+.|++....- --....|+.+-..|..+|.-..|..+++.-..
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 3444445577789999999999999999999999999886543 33556788888899999999999999987653
Q ss_pred CC-hhHHHHHHHHHH-hcCChHHHHHHHHHHHH--CCC--CCCHHHHHHHHHHHHccC-----------CchHHHHHHHH
Q 044422 199 RN-VVSWTAIIAAFA-QEWQVDMCLELYRMMRN--SML--EPNDFTFTSILSACTGSG-----------ALGQGRSAHCQ 261 (519)
Q Consensus 199 ~~-~~~~~~li~~~~-~~~~~~~a~~~~~~m~~--~g~--~p~~~t~~~ll~~~~~~g-----------~~~~a~~~~~~ 261 (519)
|+ +..+-..-..|. +.+.+++++++-.+... .+. ......|..+.-+|...- ...++.+.++.
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 22 222222223333 34566666666555544 110 112234444444443211 12345566666
Q ss_pred HHHcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCC-
Q 044422 262 TIRMG-FFSYIQVANSLISMYCKCGNVEEAVYVFNNMH----GKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ-RVK- 334 (519)
Q Consensus 262 ~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~- 334 (519)
..+.+ -.|+...|-++ -|+..++++.|.+...+.. ..+...|..+.-.+...+++.+|+.+.+..... |..
T Consensus 470 av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~ 547 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH 547 (799)
T ss_pred HHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh
Confidence 66654 22333333332 4556677777777666543 346677777777777777888877777655432 210
Q ss_pred -----------------CCHHHHHHHHHHHHcc---------C--------------CHHHHHH-------HHH-HHHHc
Q 044422 335 -----------------PDAITFLGVISSCRHG---------G--------------LVEEGKV-------YFD-SMAKH 366 (519)
Q Consensus 335 -----------------p~~~t~~~ll~~~~~~---------g--------------~~~~a~~-------~~~-~m~~~ 366 (519)
--..|...++..+-.. | +..++.. +.. +....
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 0011222222222200 0 0000000 000 00001
Q ss_pred C---------CC--cC------HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HH-----------------HHHHH
Q 044422 367 G---------LK--PE------LDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPN-AV-----------------IWEAA 410 (519)
Q Consensus 367 ~---------~~--p~------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~-----------------~~~~~ 410 (519)
| .. |+ ...|......+.+.+..++|...+.+. ++.|- .. .+..+
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 1 11 22 234455566667777777776544443 22221 11 11445
Q ss_pred HHhhhcCCCCchhHHHHHHHHhccCCHHHHHH--HHHHHHHCC
Q 044422 411 ESRLLLEPECAATHVQLANLYAGVRCWDQAAR--VRKLMKDKG 451 (519)
Q Consensus 411 ~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~--~~~~m~~~g 451 (519)
..++.++|+++.....|...+.+.|+-.-|.. ++..+.+.+
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 56778999999999999999999998877777 888887765
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0027 Score=67.13 Aligned_cols=252 Identities=8% Similarity=0.038 Sum_probs=157.9
Q ss_pred CCCC-hHHHHHHHHHHHHhCCCHHHHHHHHccCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 044422 165 GFIA-NVYVGSSLITLYSKCRVIIDAYKVFEEMPV--RN-VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFT 240 (519)
Q Consensus 165 g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 240 (519)
++.| +...+..|+..+...+++++|.++.+...+ |+ ...|-.+...+.+.++.+.+..+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------- 87 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL----------------- 87 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------
Confidence 3444 556889999999999999999999986652 33 34455555566777765554443
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCC
Q 044422 241 SILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGL 317 (519)
Q Consensus 241 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~ 317 (519)
.++.......++..+..+.+.+... .-+...+..+..+|-+.|+.++|..+|+++.+ .|+.+.|.+...|... +
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h
Confidence 3333444444554455555566654 34556888999999999999999999999876 4778899999999999 9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHH---
Q 044422 318 AVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDF--- 394 (519)
Q Consensus 318 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~--- 394 (519)
+++|..++.+.... +...+++..+..+|.++.... +-+...+-.+.+.....-....+..+
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~~~~~~~~~~~~ 228 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHREFTRLVGLLED 228 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhhccchhHHHHHH
Confidence 99999999887654 445556777777777777643 11222333333333222112222222
Q ss_pred -HHhCCCCCC-HHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 044422 395 -IKQMPIYPN-AVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKT 454 (519)
Q Consensus 395 -~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~ 454 (519)
++..+-..+ ......++.++..+|.|..+..-|+..|. ++|..--.+=+.++-.|+.-
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~~~~~ee~l~~s~l~~ 288 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKDHSLLEDYLKMSDIGN 288 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccCcchHHHHHHHhcccc
Confidence 222210000 12334556678888888888888998887 44444222222333444433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0058 Score=63.90 Aligned_cols=233 Identities=10% Similarity=0.070 Sum_probs=161.2
Q ss_pred CCCCHHHHHHHHHHHhcCCChhhHH-HHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHH----HHHHHccCCCCChhHHH
Q 044422 131 LKVDASFLSTAVTSCGSTRNIRGGA-PYQCLAIRTGFIANVYVGSSLITLYSKCRVIID----AYKVFEEMPVRNVVSWT 205 (519)
Q Consensus 131 ~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~ 205 (519)
...++.....+=.+.+..|.-++|- ++++++.+ ++...++.....+ +..+.+.. ..++..+-
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 90 (694)
T PRK15179 24 PASGPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRY-PHTELFQV 90 (694)
T ss_pred CCCCcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhc-cccHHHHH
Confidence 3334555555555667777766653 34443321 2222232222222 22332222 24588899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 044422 206 AIIAAFAQEWQVDMCLELYRMMRNSMLEPN-DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC 284 (519)
Q Consensus 206 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (519)
.|.....+.|.+++|..+++...+. .|| ......+..++.+.+++++|....+...... +.+......+..++.+.
T Consensus 91 ~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 91 LVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999885 565 4567788899999999999999999998876 66778888899999999
Q ss_pred CCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 044422 285 GNVEEAVYVFNNMHGK---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFD 361 (519)
Q Consensus 285 ~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 361 (519)
|++++|..+|++...+ +..++..+..++-..|+.++|...|+...+. ..|....|+..+ +++..-..+++
T Consensus 168 g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~~~~~~~~ 240 (694)
T PRK15179 168 GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLNADLAALR 240 (694)
T ss_pred cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHHHHHHHHH
Confidence 9999999999998754 3578888889999999999999999998875 344556666554 33444456666
Q ss_pred HHHHc----CCCcCHHHHHHHHHHHHHcC
Q 044422 362 SMAKH----GLKPELDHYSCVVDLLGRAG 386 (519)
Q Consensus 362 ~m~~~----~~~p~~~~~~~li~~~~~~g 386 (519)
++.-. |..........++..|.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 241 RLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred HcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 66532 23333445566666665543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00036 Score=52.99 Aligned_cols=82 Identities=13% Similarity=0.156 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHHcCCCcCHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRV-KPDAITFLGVISSCRHGG--------LVEEGKVYFDSMAKHGLKPELDH 374 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~ 374 (519)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+++.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566677777999999999999999999 899999999999877653 34567889999999999999999
Q ss_pred HHHHHHHHHHc
Q 044422 375 YSCVVDLLGRA 385 (519)
Q Consensus 375 ~~~li~~~~~~ 385 (519)
|+.++..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99999988753
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00097 Score=61.02 Aligned_cols=281 Identities=10% Similarity=0.072 Sum_probs=169.1
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHH-HHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHh--CCCHHHHH-
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVT-SCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSK--CRVIIDAY- 190 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A~- 190 (519)
.+.+|++++......+ |+-...|.-+. +|.+..-++-+.+++..-++. ++-++..-|.......| .|+..+++
T Consensus 166 HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred HHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHH
Confidence 6799999999998753 44445554444 345667777777887776654 34444455544443333 23322211
Q ss_pred -HHHccCC-------------------------------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 044422 191 -KVFEEMP-------------------------------VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFT 238 (519)
Q Consensus 191 -~~~~~m~-------------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 238 (519)
.+-+... +.=+.+--.|+--|.+++++++|..+.+++.- ..|-...
T Consensus 243 k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~Eyi 320 (557)
T KOG3785|consen 243 KELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYI 320 (557)
T ss_pred HHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHH
Confidence 1111111 11122233355567889999999988766622 1232222
Q ss_pred HHHHHHHHHccC-------CchHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHH
Q 044422 239 FTSILSACTGSG-------ALGQGRSAHCQTIRMGFFSY-IQVANSLISMYCKCGNVEEAVYVFNNMHG----KDIVSWN 306 (519)
Q Consensus 239 ~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~ 306 (519)
...+. .+..| ...-|.+.|+..-+++..-| +.--.++..++.-.-++++++-.++.+.. .|...+
T Consensus 321 lKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~- 397 (557)
T KOG3785|consen 321 LKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL- 397 (557)
T ss_pred HHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-
Confidence 22222 22222 34556666666655554322 23345566666666778888888887764 344444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHHHHcCCCcCHHH-HHHHHHHHHH
Q 044422 307 SMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGV-ISSCRHGGLVEEGKVYFDSMAKHGLKPELDH-YSCVVDLLGR 384 (519)
Q Consensus 307 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~ 384 (519)
.+..+++..|.+.+|.++|-......++ |..+|..+ .++|.+.+.++.|+.++-++.. +.+..+ ...+..-|.+
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYK 473 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHH
Confidence 4678899999999999999887655555 56666655 5578899999988877655432 223333 3445667888
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHH
Q 044422 385 AGLLEEARDFIKQM-PIYPNAVIW 407 (519)
Q Consensus 385 ~g~~~~A~~~~~~~-~~~p~~~~~ 407 (519)
++.+--|-+.|+.+ ...|+...|
T Consensus 474 ~~eFyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred HHHHHHHHHhhhHHHccCCCcccc
Confidence 88888888878777 346776666
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0032 Score=52.28 Aligned_cols=126 Identities=19% Similarity=0.234 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCH--HHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKP--DAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPEL--DHYSCVV 379 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li 379 (519)
.|..++..+ ..++...+...++.+.+....- .......+...+...|++++|...|+........|+. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 444555555 4788888888888887753221 1223333456677888999999999888876522322 2334467
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHH
Q 044422 380 DLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKL 446 (519)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 446 (519)
..+...|++++|+..++.....+ |. +..+..+..+|.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~----~~------------~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA----FK------------ALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc----hH------------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77888899999998887653111 11 22455578889999999999988875
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.8e-05 Score=44.52 Aligned_cols=30 Identities=20% Similarity=0.466 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSML 232 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 232 (519)
+||.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777766653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0078 Score=57.90 Aligned_cols=114 Identities=16% Similarity=0.160 Sum_probs=58.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH
Q 044422 211 FAQEWQVDMCLELYRMMRNSMLEPND-FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEE 289 (519)
Q Consensus 211 ~~~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 289 (519)
+...|++++|+..++.+... .|+. .-.......+.+.++.++|.+.++.+.... +......-.+..+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 33455555555555555443 2332 233334445555555555555555555542 2224444555555555566655
Q ss_pred HHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 044422 290 AVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEE 327 (519)
Q Consensus 290 a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 327 (519)
|..+++.... .|+..|..|..+|...|+..++.....+
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 5555555442 2445555566666655555555555444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.05 Score=53.14 Aligned_cols=79 Identities=6% Similarity=0.111 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 044422 318 AVRAIDLFEEMMKQR-VKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKP-ELDHYSCVVDLLGRAGLLEEARDFI 395 (519)
Q Consensus 318 ~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 395 (519)
.+.....++++...- ..|+ .+|..+++...+..-++.|..+|.+..+.+..+ .+..+++++.-|| +++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 555666666665532 4443 357777888888888889999999988877666 6777788887766 46778888888
Q ss_pred HhC
Q 044422 396 KQM 398 (519)
Q Consensus 396 ~~~ 398 (519)
+--
T Consensus 425 eLG 427 (656)
T KOG1914|consen 425 ELG 427 (656)
T ss_pred HHH
Confidence 753
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0085 Score=58.20 Aligned_cols=102 Identities=14% Similarity=-0.037 Sum_probs=80.3
Q ss_pred HHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC--CCCh-hHHHHHHHHHHhcCChHH
Q 044422 143 TSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP--VRNV-VSWTAIIAAFAQEWQVDM 219 (519)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~-~~~~~li~~~~~~~~~~~ 219 (519)
.+....|+++.|...|...+... ++|...|+.-..+|+..|++++|++=-.+-. .|+. -.|+-...++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 45568899999999999988765 5588899999999999999999987666655 3553 478899999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044422 220 CLELYRMMRNSMLEPNDFTFTSILSAC 246 (519)
Q Consensus 220 a~~~~~~m~~~g~~p~~~t~~~ll~~~ 246 (519)
|+..|.+=++.. +-+...++-+..++
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 999998876653 23445555565555
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.076 Score=55.05 Aligned_cols=213 Identities=9% Similarity=-0.004 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHH--hcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSC--GSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKV 192 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 192 (519)
++..|+.....+.++ .||. .|..++.++ .+.|..++|..+++.....+. -|..|...+-.+|-+.|+.++|..+
T Consensus 24 qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHH
Confidence 678888888777664 2333 355566664 377888888877776655442 3777888888888888888888888
Q ss_pred HccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------chHHHHHHH
Q 044422 193 FEEMPV--RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGA----------LGQGRSAHC 260 (519)
Q Consensus 193 ~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~----------~~~a~~~~~ 260 (519)
|++... |+......+..+|.+.+.+.+-.+.--+|-+ .++-+...|-.++......-. ..-|....+
T Consensus 100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 888864 5555555666777777776654444333323 233445666666665543211 123555555
Q ss_pred HHHHcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHh-c----CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 044422 261 QTIRMG-FFSYIQVANSLISMYCKCGNVEEAVYVFNN-M----HGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR 332 (519)
Q Consensus 261 ~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 332 (519)
.+.+.+ ---+..-...-...+-..|++++|.+++.. . ...+...-+--+..+...+++.+..++-.++...|
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 555543 111222222223344556778888887732 1 12233333444555556666666666665555554
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=4e-05 Score=44.43 Aligned_cols=29 Identities=34% Similarity=0.725 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQR 332 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 332 (519)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0014 Score=53.71 Aligned_cols=89 Identities=9% Similarity=-0.023 Sum_probs=37.3
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCC
Q 044422 241 SILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGL 317 (519)
Q Consensus 241 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~ 317 (519)
.+...+...|++++|...++.+...+ +.+...+..+...+.+.|++++|...++...+ .+...+..+...+...|+
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Confidence 33344444444444444444444432 22334444444444444444444444443321 122333333444444444
Q ss_pred hHHHHHHHHHHHH
Q 044422 318 AVRAIDLFEEMMK 330 (519)
Q Consensus 318 ~~~A~~~~~~m~~ 330 (519)
+++|...|+...+
T Consensus 101 ~~~A~~~~~~al~ 113 (135)
T TIGR02552 101 PESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0017 Score=53.18 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044422 271 IQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSC 347 (519)
Q Consensus 271 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 347 (519)
......+...+...|++++|.+.|+.+.+ .+...|..+...+...|++++|...++...+.+ +.+..++..+...+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 34455556666666677777666665533 244566666666666666666666666665543 22344555555566
Q ss_pred HccCCHHHHHHHHHHHHH
Q 044422 348 RHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 348 ~~~g~~~~a~~~~~~m~~ 365 (519)
...|+++.|...|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666665
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00079 Score=51.18 Aligned_cols=80 Identities=10% Similarity=0.059 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCC--------chHHHHHHHHHHHcCCCCcHHHH
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNSML-EPNDFTFTSILSACTGSGA--------LGQGRSAHCQTIRMGFFSYIQVA 274 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~--------~~~a~~~~~~~~~~~~~~~~~~~ 274 (519)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- .-....+|+.|...++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666777999999999999999999 9999999999999887642 34567789999999999999999
Q ss_pred HHHHHHHHh
Q 044422 275 NSLISMYCK 283 (519)
Q Consensus 275 ~~li~~~~~ 283 (519)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00067 Score=65.72 Aligned_cols=120 Identities=10% Similarity=0.022 Sum_probs=91.4
Q ss_pred CCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC-C-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 044422 165 GFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV-R-----NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFT 238 (519)
Q Consensus 165 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 238 (519)
+.+.+......+++.+....+++.+..++.+... | -..|..++|+.|...|..++++.+++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3455666777777777777777777777766652 1 234556888888888888888888888888888888888
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 044422 239 FTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC 284 (519)
Q Consensus 239 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (519)
++.||..+.+.|++..|.++...|...+...+..|+...+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887777666667776666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0056 Score=50.79 Aligned_cols=83 Identities=12% Similarity=0.084 Sum_probs=34.0
Q ss_pred HHHHccCCchHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCChH
Q 044422 244 SACTGSGALGQGRSAHCQTIRMGFFSY--IQVANSLISMYCKCGNVEEAVYVFNNMHGK--DIVSWNSMIAGYAQHGLAV 319 (519)
Q Consensus 244 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~ 319 (519)
..+...|++++|...|+.+......+. ....-.+...+...|++++|+..++....+ ....+......|.+.|+.+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYD 135 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHH
Confidence 444444555555555555444431111 112223344444444444444444443221 1122333334444444444
Q ss_pred HHHHHHH
Q 044422 320 RAIDLFE 326 (519)
Q Consensus 320 ~A~~~~~ 326 (519)
+|...|+
T Consensus 136 ~A~~~y~ 142 (145)
T PF09976_consen 136 EARAAYQ 142 (145)
T ss_pred HHHHHHH
Confidence 4444444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0025 Score=52.31 Aligned_cols=115 Identities=8% Similarity=-0.077 Sum_probs=90.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCch
Q 044422 343 VISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAA 422 (519)
Q Consensus 343 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 422 (519)
+..-+...|+++.|.++|+.+.... +-+..-|-.|.-++-..|++.+|.+.|... +.++|+++.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A---------------~~L~~ddp~ 104 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRA---------------AQIKIDAPQ 104 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHH---------------HhcCCCCch
Confidence 3444677899999999999998754 335566777888999999999999988754 578899999
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCCeeEEEEEcCEEEEEEecCCcCcChhhHHHHHHHHHHHHHH
Q 044422 423 THVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKT 496 (519)
Q Consensus 423 ~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 496 (519)
++..+..++...|+.+.|.+.|+......- .+|+..++.+..+..++.|.+
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~-----------------------~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRICG-----------------------EVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-----------------------cChhHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999998776531 234555666666666666654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0011 Score=64.35 Aligned_cols=118 Identities=8% Similarity=0.018 Sum_probs=79.0
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 044422 268 FSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFL 341 (519)
Q Consensus 268 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 341 (519)
+.+......+++......+++.+..++.+.... -..|..++|+.|.+.|..+.++.+++.=...|+-||..||+
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 444555555666666666666666666555431 12355677778888888888888887777778888888888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHc
Q 044422 342 GVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRA 385 (519)
Q Consensus 342 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 385 (519)
.|++.+.+.|++..|.++...|...+.-.+..|+.-.+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888877777555555555555445555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.068 Score=47.20 Aligned_cols=116 Identities=11% Similarity=0.133 Sum_probs=56.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 044422 214 EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYV 293 (519)
Q Consensus 214 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 293 (519)
.|++++|+++|+...+.+ +.|..++..-+...-..|+--+|.+-+....+. +..|...|.-+-+.|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 455555555555555544 334444444444444444444554444444433 345555666666666666666666655
Q ss_pred HHhcC--CC-ChhHHHHHHHHHHHc---CChHHHHHHHHHHHHC
Q 044422 294 FNNMH--GK-DIVSWNSMIAGYAQH---GLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 294 ~~~~~--~~-~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 331 (519)
++++. +| ++..+..+...+.-. .+.+-|.+.|.+..+.
T Consensus 177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 55543 33 222233333332222 2345566666665553
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0016 Score=55.99 Aligned_cols=100 Identities=10% Similarity=0.122 Sum_probs=69.9
Q ss_pred CCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----------------CchHHH
Q 044422 198 VRNVVSWTAIIAAFAQE-----WQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG----------------ALGQGR 256 (519)
Q Consensus 198 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----------------~~~~a~ 256 (519)
..+..+|..++..|.+. |+.+=....++.|.+-|+.-|..+|+.||+.+=+.. +-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 45556666666666543 556666667777888888888888888887765421 335678
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHhc
Q 044422 257 SAHCQTIRMGFFSYIQVANSLISMYCKCGN-VEEAVYVFNNM 297 (519)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~ 297 (519)
.++++|...|+-||..++..+++.+++.+. +.+..++.-.|
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 889999999999999999999998887765 33444444444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0019 Score=55.65 Aligned_cols=97 Identities=15% Similarity=0.261 Sum_probs=73.2
Q ss_pred HHHHHhc--CCCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-------------
Q 044422 291 VYVFNNM--HGKDIVSWNSMIAGYAQH-----GLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG------------- 350 (519)
Q Consensus 291 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~------------- 350 (519)
...|+.. ...+-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 445667777777777644 55666667777888888888888888888877542
Q ss_pred ---CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCC
Q 044422 351 ---GLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGL 387 (519)
Q Consensus 351 ---g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 387 (519)
.+.+-|.+++++|..+|+.||..++..+++.+.+.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346789999999999999999999999999987764
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00051 Score=50.93 Aligned_cols=81 Identities=16% Similarity=0.246 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHH
Q 044422 350 GGLVEEGKVYFDSMAKHGL-KPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLA 428 (519)
Q Consensus 350 ~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~ 428 (519)
.|+++.|..+++++.+..- .++...+..+..+|.+.|++++|..+++..+..| .+......++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~----------------~~~~~~~l~a 65 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDP----------------SNPDIHYLLA 65 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHH----------------CHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCC----------------CCHHHHHHHH
Confidence 3566666666666665321 1133334446666666666666666666522111 1222333356
Q ss_pred HHHhccCCHHHHHHHHHH
Q 044422 429 NLYAGVRCWDQAARVRKL 446 (519)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~ 446 (519)
.+|.+.|++++|++++++
T Consensus 66 ~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhc
Confidence 666667777777666654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.067 Score=56.09 Aligned_cols=159 Identities=8% Similarity=0.032 Sum_probs=82.6
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCC-----hhHHHHHHHHH
Q 044422 137 FLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRN-----VVSWTAIIAAF 211 (519)
Q Consensus 137 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~li~~~ 211 (519)
.|..+...|+..-+...|.+-|....+.. .-+........+.|++..+++.|..+.-...+.+ ...|....-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 45555555555555666666666554432 2344556666666777777766666632222211 11222233345
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 044422 212 AQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAV 291 (519)
Q Consensus 212 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 291 (519)
.+.++...+..-|+...+.. +-|...|..+..+|.+.|++..|.++|....... +.+...---..-.-+..|++.+|.
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHH
Confidence 55566666666666555543 2355566667777777777777777766655542 111111111122334556666666
Q ss_pred HHHHhcC
Q 044422 292 YVFNNMH 298 (519)
Q Consensus 292 ~~~~~~~ 298 (519)
..+..+.
T Consensus 651 d~l~~ii 657 (1238)
T KOG1127|consen 651 DALGLII 657 (1238)
T ss_pred HHHHHHH
Confidence 6655443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0096 Score=51.05 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPN--DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISM 280 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 280 (519)
.|..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+....+.. +.+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444445555555555555555543322111 2344455555555555555555555554432 2233444444445
Q ss_pred HHhcCCH
Q 044422 281 YCKCGNV 287 (519)
Q Consensus 281 ~~~~~~~ 287 (519)
|...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 5544443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0061 Score=45.52 Aligned_cols=92 Identities=14% Similarity=0.118 Sum_probs=59.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHH
Q 044422 305 WNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGR 384 (519)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 384 (519)
+..+...+...|++++|...+++..+.. +.+...+..+...+...++++.|.+.++...+.. +.+...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4455566667777777777777776542 2233555666666777777777777777776643 2333566667777777
Q ss_pred cCCHHHHHHHHHhC
Q 044422 385 AGLLEEARDFIKQM 398 (519)
Q Consensus 385 ~g~~~~A~~~~~~~ 398 (519)
.|++++|...+...
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 77777777776654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0041 Score=46.49 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCK 283 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (519)
|..+...+...|++++|...+++..+.. +.+...+..+..++...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3344445555555555555555554432 1222344444555555555555555555544432 2222344444444444
Q ss_pred cCCHHHHHHHHHh
Q 044422 284 CGNVEEAVYVFNN 296 (519)
Q Consensus 284 ~~~~~~a~~~~~~ 296 (519)
.|+.+.|...+..
T Consensus 81 ~~~~~~a~~~~~~ 93 (100)
T cd00189 81 LGKYEEALEAYEK 93 (100)
T ss_pred HHhHHHHHHHHHH
Confidence 4444444444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.13 Score=45.43 Aligned_cols=160 Identities=13% Similarity=0.160 Sum_probs=117.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSI-LSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMY 281 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (519)
.|..++-+....|+.+-|..+++.+...= |.+.-...| ..-+-..|++++|.++++.+.+.. +.|.++|-.-+-..
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHH
Confidence 34555666677888899999998887652 443222222 222345799999999999999887 67788888777777
Q ss_pred HhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHH
Q 044422 282 CKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGG---LVEE 355 (519)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g---~~~~ 355 (519)
-..|+--+|++-+....+ .|...|.-+...|...|++++|.-.++++.-.. +.+...|..+.+.+.-.| +.+.
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 778887788877776654 589999999999999999999999999998752 334455555655544443 5667
Q ss_pred HHHHHHHHHHc
Q 044422 356 GKVYFDSMAKH 366 (519)
Q Consensus 356 a~~~~~~m~~~ 366 (519)
+.+.|.+..+.
T Consensus 210 arkyy~~alkl 220 (289)
T KOG3060|consen 210 ARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHh
Confidence 88888888774
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.19 Score=52.21 Aligned_cols=73 Identities=12% Similarity=0.094 Sum_probs=34.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 044422 212 AQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNV 287 (519)
Q Consensus 212 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 287 (519)
.+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+|+..... .|+......+..+|.+.+.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSY 126 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHH
Confidence 3445555555555444333322 4455555555555555555555555554443 23344444444444444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00099 Score=49.35 Aligned_cols=81 Identities=19% Similarity=0.207 Sum_probs=56.4
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 044422 315 HGLAVRAIDLFEEMMKQRVK-PDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARD 393 (519)
Q Consensus 315 ~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 393 (519)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+.+. .+....-.+..+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57888999999988876432 2444555578888899999999999888 32221 123444456788889999999998
Q ss_pred HHHh
Q 044422 394 FIKQ 397 (519)
Q Consensus 394 ~~~~ 397 (519)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8864
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.1 Score=49.26 Aligned_cols=110 Identities=21% Similarity=0.173 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLG 383 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 383 (519)
+.+..|.-+...|+...|.++-.+. -.||...|..-+.+++..+++++..++-.. +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 4556677788889988888876665 247888999999999999999887776432 223466888999999
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHH
Q 044422 384 RAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLM 447 (519)
Q Consensus 384 ~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 447 (519)
+.|+..+|..++..++ + ..-+..|.+.|+|.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~~--~----------------------~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP--D----------------------EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhCC--h----------------------HHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999999863 1 22478899999999998875543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.025 Score=46.54 Aligned_cols=83 Identities=6% Similarity=-0.016 Sum_probs=34.3
Q ss_pred HHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHH
Q 044422 180 YSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGR 256 (519)
Q Consensus 180 ~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 256 (519)
+...|++++|.++|+-+. ..+..-|-.|..++-..|++++|+..|....... +-|...+-.+..++...|+.+.|.
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHH
Confidence 334444444444444433 1222333344444444444444444444444332 123334444444444444444444
Q ss_pred HHHHHHH
Q 044422 257 SAHCQTI 263 (519)
Q Consensus 257 ~~~~~~~ 263 (519)
+.|+...
T Consensus 124 ~aF~~Ai 130 (157)
T PRK15363 124 KALKAVV 130 (157)
T ss_pred HHHHHHH
Confidence 4444333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0095 Score=47.23 Aligned_cols=59 Identities=7% Similarity=0.009 Sum_probs=23.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCCchHHHHHHHHHHHc
Q 044422 207 IIAAFAQEWQVDMCLELYRMMRNSMLE--PNDFTFTSILSACTGSGALGQGRSAHCQTIRM 265 (519)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 265 (519)
+..++.+.|+++.|...|+.+...... .....+..+..++.+.|+.++|...++.+.+.
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 444444444444444444444332100 01223333334444444444444444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.02 Score=53.31 Aligned_cols=127 Identities=9% Similarity=0.105 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 044422 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSA-CTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISM 280 (519)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 280 (519)
.+|..+|....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+. ++.+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666666666666777776665432 1222333322222 22234455566666666554 34555566666666
Q ss_pred HHhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 281 YCKCGNVEEAVYVFNNMHGK------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 281 ~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
+.+.++.+.|..+|+..... ....|...+.-=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666655541 123555555555555555555555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0063 Score=58.83 Aligned_cols=105 Identities=10% Similarity=-0.024 Sum_probs=84.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCH
Q 044422 309 IAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLL 388 (519)
Q Consensus 309 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 388 (519)
...+...|++++|+..|++..+... -+...|..+..+|...|+++.|...++++.+.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 4567788999999999999988643 356778888889999999999999999998853 33667788889999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHH
Q 044422 389 EEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANL 430 (519)
Q Consensus 389 ~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 430 (519)
++|...|+.. ++++|.++.+...+..+
T Consensus 87 ~eA~~~~~~a---------------l~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKG---------------ASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHH---------------HHhCCCCHHHHHHHHHH
Confidence 9999877644 67788887776655433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.019 Score=48.99 Aligned_cols=62 Identities=13% Similarity=0.084 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEP--NDFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
.|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444445555555555555554332111 112444455555555555555555555444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.072 Score=49.79 Aligned_cols=127 Identities=16% Similarity=0.181 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCH
Q 044422 273 VANSLISMYCKC-GNVEEAVYVFNNMHG-----KD----IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVK-----PDA 337 (519)
Q Consensus 273 ~~~~li~~~~~~-~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~ 337 (519)
++..+...|-.. |++++|.+.|++..+ .. ...+..+...+.+.|++++|.++|++....-.. .+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 455555566666 677777777765542 11 235566777888999999999999988765322 222
Q ss_pred H-HHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCcC--HHHHHHHHHHHHH--cCCHHHHHHHHHhCC
Q 044422 338 I-TFLGVISSCRHGGLVEEGKVYFDSMAKH--GLKPE--LDHYSCVVDLLGR--AGLLEEARDFIKQMP 399 (519)
Q Consensus 338 ~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~ 399 (519)
. .|...+-++...|++..|...+++.... ++..+ ......|+.+|-. ...+.+|..-|+.+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 2 2223333566678999999999888742 33333 3455667777754 345777777777773
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.019 Score=45.43 Aligned_cols=95 Identities=16% Similarity=0.065 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCcCHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVK--PDAITFLGVISSCRHGGLVEEGKVYFDSMAKHG--LKPELDHYSCVV 379 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li 379 (519)
++......+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|+++.|...++.+.... .......+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555666677777777777766653211 112344455666667777777777777666422 111234455566
Q ss_pred HHHHHcCCHHHHHHHHHhC
Q 044422 380 DLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~~ 398 (519)
.++.+.|+.++|...++++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHhCChHHHHHHHHHH
Confidence 6666777777777766655
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.029 Score=55.82 Aligned_cols=258 Identities=12% Similarity=0.101 Sum_probs=153.4
Q ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHccCC-----------CCChhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC
Q 044422 168 ANVYVGSSLITLYSKCRVIIDAYKVFEEMP-----------VRNVVSWTAIIAAFAQEWQ--VDMCLELYRMMRNSMLEP 234 (519)
Q Consensus 168 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p 234 (519)
|....+.+=+..|...|.+++|.++----. .-+...++..=.+|.+-.+ +-+...-+++|+++|-.|
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 333444555556677777777665422111 1233445555667777665 345556678888999889
Q ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--------------C
Q 044422 235 NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--------------K 300 (519)
Q Consensus 235 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------------~ 300 (519)
+... +...|+-.|.+.+|.++|.+ .|.. |..++.|...+.++.|.++...-.. .
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr 701 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWAR 701 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhh
Confidence 8763 45667778889998888754 3322 3455666666667777666653321 0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHH------HHHCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC
Q 044422 301 DIVSWNSMIAGYAQHGLAVRAIDLFEE------MMKQRV---KPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE 371 (519)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~~~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 371 (519)
++.-=.+....+...|+.++|..+.-+ +.+-+- ..+..+...+...+-+...+..|.++|..|-+
T Consensus 702 ~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------ 775 (1081)
T KOG1538|consen 702 NIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD------ 775 (1081)
T ss_pred hcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc------
Confidence 111112334445567777777665321 111111 12334455555555566677777888877753
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHH-HHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 372 LDHYSCVVDLLGRAGLLEEARDFIKQMP-IYPNAVI-WEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~-~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
...+++.....++|++|..+-+..+ ..||... |... +. ...-+..--.+|.++|+..+|..+++++..
T Consensus 776 ---~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqw---LA----E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 776 ---LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQW---LA----ENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ---HHHHhhheeecccchHhHhhhhhCccccccccchHHHH---hh----hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 2346778888999999999999884 4454321 1100 00 011233346799999999999999999876
Q ss_pred CCCC
Q 044422 450 KGLK 453 (519)
Q Consensus 450 ~g~~ 453 (519)
..+.
T Consensus 846 nav~ 849 (1081)
T KOG1538|consen 846 NAVA 849 (1081)
T ss_pred hhhh
Confidence 6543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.024 Score=54.89 Aligned_cols=100 Identities=10% Similarity=0.057 Sum_probs=81.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 044422 277 LISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLV 353 (519)
Q Consensus 277 li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 353 (519)
....+...|++++|++.|++..+ .+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 34567788999999999998865 356788888999999999999999999998864 23567788888899999999
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHH
Q 044422 354 EEGKVYFDSMAKHGLKPELDHYSCVV 379 (519)
Q Consensus 354 ~~a~~~~~~m~~~~~~p~~~~~~~li 379 (519)
+.|...|++..+. .|+.......+
T Consensus 87 ~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 9999999999984 46555444443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.049 Score=43.08 Aligned_cols=106 Identities=13% Similarity=0.058 Sum_probs=62.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCC---cHHHHHHHHHHH
Q 044422 207 IIAAFAQEWQVDMCLELYRMMRNSMLEPN--DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFS---YIQVANSLISMY 281 (519)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~ 281 (519)
+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..+++...... +. +......+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 34556667788888888888777776544 2345566677777778888877777766542 11 122222223355
Q ss_pred HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 044422 282 CKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYA 313 (519)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 313 (519)
...|+.++|.+.+-....++...|..-|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777776665544444444444444443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.017 Score=53.77 Aligned_cols=127 Identities=13% Similarity=0.085 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 044422 237 FTFTSILSACTGSGALGQGRSAHCQTIRMG-FFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGY 312 (519)
Q Consensus 237 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~ 312 (519)
.+|..+++..-+.+..+.|..+|....+.+ +..++.+..+++..+ ..++.+.|..+|+...+ .+...|...+.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 457777777778777888888888887543 223333434444332 24566668888887664 4667777777777
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 313 AQHGLAVRAIDLFEEMMKQRVKPDA---ITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 313 ~~~g~~~~A~~~~~~m~~~~~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
...|+.+.|..+|++.... +.++. ..|...++-=.+.|+++.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887654 33222 3677777777777888888888777776
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.16 Score=49.85 Aligned_cols=173 Identities=14% Similarity=0.080 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHH
Q 044422 217 VDMCLELYRMMRNSM-LEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFS-YIQVANSLISMYCKCGNVEEAVYVF 294 (519)
Q Consensus 217 ~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~ 294 (519)
.+.....+++.+..- ..|+ .+|...++..-+..-+..|..+|.++.+.+..+ ++.+++++|..||. ++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 556666776665532 3343 567888888888889999999999999887777 78888999998885 6788899999
Q ss_pred HhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHc-C-
Q 044422 295 NNMHG--KD-IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDA--ITFLGVISSCRHGGLVEEGKVYFDSMAKH-G- 367 (519)
Q Consensus 295 ~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~- 367 (519)
+--.+ +| +.--...++-+...|+-..+..+|++....++.||. ..|..+|+-=...|++..+.++-+++... .
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 85443 34 344466777888889999999999999888766663 57999999888999999998888877642 1
Q ss_pred -CCcCHHHHHHHHHHHHHcCCHHHH
Q 044422 368 -LKPELDHYSCVVDLLGRAGLLEEA 391 (519)
Q Consensus 368 -~~p~~~~~~~li~~~~~~g~~~~A 391 (519)
..+....-..+++.|.-.+...--
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c~ 529 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPCS 529 (656)
T ss_pred hhcCCCChHHHHHHHHhhccccccc
Confidence 233333334456666555544333
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.004 Score=43.95 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccC-CHHHHHHHHHHHHH
Q 044422 371 ELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVR-CWDQAARVRKLMKD 449 (519)
Q Consensus 371 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~m~~ 449 (519)
+...|..+...+...|++++|...|++. ++++|.++.+|..+..+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a---------------i~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKA---------------IELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHH---------------HHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4567888999999999999999988744 6778889999999999999999 79999999998765
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.058 Score=46.22 Aligned_cols=85 Identities=11% Similarity=0.141 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 044422 302 IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD--AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVV 379 (519)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 379 (519)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34556666666777777777777777765432222 3456666677777788888887777777632 22344555566
Q ss_pred HHHHHcCC
Q 044422 380 DLLGRAGL 387 (519)
Q Consensus 380 ~~~~~~g~ 387 (519)
..+...|+
T Consensus 114 ~~~~~~g~ 121 (172)
T PRK02603 114 VIYHKRGE 121 (172)
T ss_pred HHHHHcCC
Confidence 66666554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.068 Score=45.56 Aligned_cols=109 Identities=13% Similarity=0.111 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 044422 302 IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKP--DAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVV 379 (519)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 379 (519)
...|..+...+...|++++|...|++.......| ...++..+...+...|++++|...++...+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3456677777778888999888888887653222 23467777788888999999999998887642 22344555566
Q ss_pred HHHH-------HcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCC
Q 044422 380 DLLG-------RAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPE 419 (519)
Q Consensus 380 ~~~~-------~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 419 (519)
..+. ..|++++|...+++.. ..+++++..+|.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~--------~~~~~a~~~~p~ 152 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAA--------EYWKQAIALAPG 152 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHH--------HHHHHHHHhCcc
Confidence 5665 7888888877776541 334455555554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0038 Score=43.45 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=49.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 378 VVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
+...+.+.|++++|...|+.+ ++..|.++.++..+..++...|++++|..+|++..+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~---------------l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQA---------------LKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHH---------------HCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHH---------------HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 456788999999999988866 45567777888889999999999999999999987653
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.11 Score=48.54 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=73.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHH----cCCCcC--HHHHHHHH
Q 044422 307 SMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG-GLVEEGKVYFDSMAK----HGLKPE--LDHYSCVV 379 (519)
Q Consensus 307 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~m~~----~~~~p~--~~~~~~li 379 (519)
..+..|...|++..|-+++..+ ...|... |+++.|.+.|++..+ .| .+. ..++..+.
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A 162 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAA 162 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHH
Confidence 3556667777777766655554 4556666 889999999888764 23 221 34566788
Q ss_pred HHHHHcCCHHHHHHHHHhCC---CCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 380 DLLGRAGLLEEARDFIKQMP---IYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
..+.+.|++++|.++|++.. ...+..-|+. ...|...+-.+...|++..|.+.+++....
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~-----------~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA-----------KEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH-----------HHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhH-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88999999999999999862 1111111111 113344566778889999999999988654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.12 Score=45.85 Aligned_cols=132 Identities=12% Similarity=0.043 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCc-----HHHHH
Q 044422 201 VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSY-----IQVAN 275 (519)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~ 275 (519)
..+.+.++.++.-.+.+.-.+.++++..+...+-+......|.+.--+.|+.+.|...++...+..-..+ .-+..
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 4456777778878888888899999988876666777778888888899999999999997766432333 33334
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR 332 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 332 (519)
..-..|.-.+++..|...|+++.. .|+...|.-.-+..-.|+..+|.+.++.|.+.-
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 444556677889999999987765 355666666666677889999999999998763
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0014 Score=38.63 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=30.0
Q ss_pred HHHhhhcCCCCchhHHHHHHHHhccCCHHHHH
Q 044422 410 AESRLLLEPECAATHVQLANLYAGVRCWDQAA 441 (519)
Q Consensus 410 ~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~ 441 (519)
++++++++|+++.+|..|...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 46889999999999999999999999999986
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.18 Score=45.78 Aligned_cols=52 Identities=10% Similarity=-0.082 Sum_probs=29.5
Q ss_pred HHHhCCCHHHHHHHHccCCC--CChh-H---HHHHHHHHHhcCChHHHHHHHHHHHHC
Q 044422 179 LYSKCRVIIDAYKVFEEMPV--RNVV-S---WTAIIAAFAQEWQVDMCLELYRMMRNS 230 (519)
Q Consensus 179 ~~~~~g~~~~A~~~~~~m~~--~~~~-~---~~~li~~~~~~~~~~~a~~~~~~m~~~ 230 (519)
.+.+.|++++|.+.|+.+.. |+.. . .-.+..++.+.+++++|...+++..+.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34456667777766666652 2221 1 123445666667777777777666654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.042 Score=57.52 Aligned_cols=178 Identities=11% Similarity=0.063 Sum_probs=121.4
Q ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 044422 252 LGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEM 328 (519)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 328 (519)
...+...|-...+.. +.-...|..|...|+...+...|.+.|+...+ .+..++....+.|+...+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 444444443333332 22356889999999999999999999998776 35678888999999999999999984332
Q ss_pred HHCCCCCCHHHHHH--HHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHH
Q 044422 329 MKQRVKPDAITFLG--VISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP-IYPNAV 405 (519)
Q Consensus 329 ~~~~~~p~~~t~~~--ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~ 405 (519)
-+.. +.-...++. .--.|...++...+..-|+...+.. +.|...|..+..+|.++|++.-|.+.|.+.. ++|+.
T Consensus 553 ~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s- 629 (1238)
T KOG1127|consen 553 AQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS- 629 (1238)
T ss_pred hhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh-
Confidence 2221 111122222 2334667788889998888888753 3478899999999999999999999998873 33432
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHH
Q 044422 406 IWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
.|.. .-.....+..|++.+|...++...
T Consensus 630 ~y~~---------------fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 630 KYGR---------------FKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHH---------------HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2222 223445666777777777766654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.64 Score=44.01 Aligned_cols=111 Identities=15% Similarity=0.125 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044422 273 VANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL 352 (519)
Q Consensus 273 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 352 (519)
+.+.-|.-+...|+...|.++-.+..-|+-.-|-..+.+++..++|++-.++-.. .- .+.-|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCC
Confidence 3445566778889999999999999989999999999999999999988876442 11 23568899999999999
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 044422 353 VEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP 399 (519)
Q Consensus 353 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 399 (519)
..+|..+..++ + +..-+..|.++|++.+|.+..-+.+
T Consensus 253 ~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 253 KKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 99999888772 2 2446788999999999988866664
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.067 Score=48.69 Aligned_cols=108 Identities=12% Similarity=-0.024 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 044422 335 PDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRL 414 (519)
Q Consensus 335 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~ 414 (519)
-|...|..|-.+|...|+.+.|..-|.+..+.. .++...+..+..++..+.. -+-+...-..+.+++
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~------------~~~ta~a~~ll~~al 220 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAG------------QQMTAKARALLRQAL 220 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC------------CcccHHHHHHHHHHH
Confidence 367788888888888888888888888887632 3455566666665544321 111222334556778
Q ss_pred hcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 044422 415 LLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTN 455 (519)
Q Consensus 415 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 455 (519)
+++|.+..+...|...+...|++.+|...++.|.+..-.-+
T Consensus 221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 89999999999999999999999999999999999874333
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.016 Score=52.36 Aligned_cols=110 Identities=16% Similarity=0.106 Sum_probs=84.2
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHHcCCHH
Q 044422 311 GYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKP-ELDHYSCVVDLLGRAGLLE 389 (519)
Q Consensus 311 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~ 389 (519)
-+.+.+++.+|+..|.+.++-. +-|.+-|..=..+|++.|.++.|.+-.+..+.. .| -..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 3677889999999999998863 236677777788999999999998888887763 34 3568899999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHH
Q 044422 390 EARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWD 438 (519)
Q Consensus 390 ~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~ 438 (519)
+|.+.|+ +++.++|.+......|-.+=.+.+...
T Consensus 167 ~A~~ayk---------------KaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 167 EAIEAYK---------------KALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHH---------------hhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9998665 558999998866655555544444433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.2 Score=50.98 Aligned_cols=72 Identities=10% Similarity=-0.057 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 044422 336 DAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNAVIWEA 409 (519)
Q Consensus 336 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 409 (519)
+...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++. ...|...+|-.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~ 491 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYW 491 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHH
Confidence 44555555444555677777777777777743 66777777777777777777777777664 44555444533
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.037 Score=50.11 Aligned_cols=95 Identities=18% Similarity=0.204 Sum_probs=80.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHH
Q 044422 279 SMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD-AITFLGVISSCRHGGLVE 354 (519)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~ 354 (519)
+-..+.+++.+|...|.+..+ .|.+-|..-..+|.+.|.++.|++-.+..... .|. ..+|..|-.+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 456788999999999998775 47788888899999999999999988887764 333 568999999999999999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHH
Q 044422 355 EGKVYFDSMAKHGLKPELDHYSC 377 (519)
Q Consensus 355 ~a~~~~~~m~~~~~~p~~~~~~~ 377 (519)
+|.+.|++.++ +.|+-.+|-.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHH
Confidence 99999999988 6798887654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.027 Score=54.42 Aligned_cols=119 Identities=16% Similarity=0.008 Sum_probs=82.4
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCch---hHHHHHHHHhccCCHHHHHHHHHH
Q 044422 370 PELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAA---THVQLANLYAGVRCWDQAARVRKL 446 (519)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~L~~~~~~~g~~~~A~~~~~~ 446 (519)
.+...++.+..+|...|++++|...|++. ++++|++.. +|..+..+|...|+.++|+..+++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rA---------------LeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETA---------------LELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35678899999999999999999988753 556666663 488899999999999999999999
Q ss_pred HHHCCCCCCCeeEEEEEcCEEEEEEecCCcCcChhh--HHHHHHHHHHHHHHcCCCCCcchhhhhhhhhhcCCCC
Q 044422 447 MKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSE--ILPVLDFLVDQMKTLGYVPEVHEEKVDDASHKRTEPF 519 (519)
Q Consensus 447 m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~ 519 (519)
..+.+ ++...++ ...+..+. ....++++++++++.|..-......-...+.+-.-||
T Consensus 138 ALels---n~~f~~i-------------~~DpdL~plR~~pef~eLlee~rk~G~~~g~~~~~~~kL~~E~~aPf 196 (453)
T PLN03098 138 ALRDY---NLKFSTI-------------LNDPDLAPFRASPEFKELQEEARKGGEDIGSSFRRDLKLISEVQAPF 196 (453)
T ss_pred HHHhc---chhHHHH-------------HhCcchhhhcccHHHHHHHHHHHHhCCccCCchhhHHHHHHHHhchH
Confidence 98863 1101000 01111111 1236677889999999876665555555555555554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.36 E-value=1.1 Score=43.41 Aligned_cols=143 Identities=11% Similarity=0.034 Sum_probs=88.2
Q ss_pred ccCccchhhHHhhhhhcCCCC---CCCch-HHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCcc
Q 044422 39 ISSSKSLHKALRVLDIISPRT---RDSTK-TEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVV 114 (519)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (519)
+.+.+++.+|..+|..+-... ..... ....++++.++...+- +........+....+......++.++..-..+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nl--d~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNL--DLMEKQLMELRQQFGKSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhH--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Confidence 447799999999998874322 23333 4556778888765532 22222222222222333344566665554555
Q ss_pred CHHHHHHHHHHHhHC--CCCC------------CHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCC----ChHHHHHHH
Q 044422 115 DVEKLISMHHDLHRE--RLKV------------DASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFI----ANVYVGSSL 176 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~l 176 (519)
..+.|++.|....++ +-+| |-..=+..+.++...|++.++..+++.+...=++ -+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 888888888777654 3222 1222345667778899999999988888765443 688888887
Q ss_pred HHHHHhC
Q 044422 177 ITLYSKC 183 (519)
Q Consensus 177 i~~~~~~ 183 (519)
+-.+++.
T Consensus 174 vlmlsrS 180 (549)
T PF07079_consen 174 VLMLSRS 180 (549)
T ss_pred HHHHhHH
Confidence 7777664
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.23 Score=50.42 Aligned_cols=62 Identities=11% Similarity=-0.001 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 235 NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 235 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
+...|..+.-.+...|++++|...+++..+.. |+...|..+...+...|+.++|.+.+++..
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33445544444445566666666666666554 455566666666666666666666666544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.015 Score=40.78 Aligned_cols=50 Identities=14% Similarity=0.024 Sum_probs=31.5
Q ss_pred cCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC
Q 044422 147 STRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197 (519)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 197 (519)
+.|+++.|..+|+.+.+.. +-+..++-.+..+|.+.|++++|..+++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566667777777666553 3355556666667777777777777776665
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.018 Score=40.44 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=23.9
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 314 QHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 314 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
+.|++++|.++|+++.+.... +......+..+|.+.|++++|..+++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555443211 333444445555555555555555555544
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.62 Score=39.33 Aligned_cols=98 Identities=12% Similarity=0.004 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHH
Q 044422 233 EPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK-----DIVSWNS 307 (519)
Q Consensus 233 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~ 307 (519)
.|+...-..|..+....|+..+|...|++...--+..|....-.+.++....+++..|...++++.+. ++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444444455555555555555555555544334444444444444444445555554444444321 2222233
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 044422 308 MIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
+...+...|+...|..-|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 33444444444444444444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.53 Score=39.11 Aligned_cols=88 Identities=11% Similarity=0.033 Sum_probs=73.0
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHH
Q 044422 346 SCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHV 425 (519)
Q Consensus 346 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 425 (519)
-+...|++++|..+|+-+...+ ..+..-+..|..++-..+++++|...|... ..++++|+..+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A---------------~~l~~~dp~p~f 109 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVA---------------FTLLKNDYRPVF 109 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHcccCCCCccc
Confidence 3457899999999999998755 235666777888888899999999988754 345677888888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Q 044422 426 QLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 426 ~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
.....|...|+.+.|...|+...+
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh
Confidence 899999999999999999998877
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.55 Score=44.98 Aligned_cols=169 Identities=10% Similarity=0.045 Sum_probs=102.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044422 275 NSLISMYCKCGNVEEAVYVFNNMHGK-------DIVSWNSMIAGYAQ---HGLAVRAIDLFEEMMKQRVKPDAITFLGVI 344 (519)
Q Consensus 275 ~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 344 (519)
-.++-+|....+++...++++.+... ....-....-++.+ .|+.++|.+++..+....-.++..||..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555688888888888888888763 12222234445566 788999999998866666677777887777
Q ss_pred HHHHc---------cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH--HHh
Q 044422 345 SSCRH---------GGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAA--ESR 413 (519)
Q Consensus 345 ~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~--~~~ 413 (519)
..|-. ....++|...|.+--+ +.|+...--.++..+...|.-.+...-..+++ ..++.+ ++.
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~-----~~l~~llg~kg 297 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIG-----VKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHH-----HHHHHHHHhhc
Confidence 66521 2236677777776654 33554433233333444443222221122221 111111 122
Q ss_pred hhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 414 LLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 414 ~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
..-.-.+...+.+++.+..-.|++++|.+..++|.+.
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2222345566777899999999999999999999876
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.14 Score=42.37 Aligned_cols=72 Identities=11% Similarity=0.182 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-----HcCCCcCHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA-----KHGLKPELDHYS 376 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~~~ 376 (519)
+...++..+...|++++|..+.+.+.... +.|...|..+|.++...|+...|.++|+.+. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44556666777888888888888877753 4477788888888888888888888887765 357778776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.016 Score=41.33 Aligned_cols=58 Identities=16% Similarity=0.136 Sum_probs=50.3
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 379 VDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
-..|.+.+++++|.+.++.+ +.++|.++..+..+..++...|++++|.+.|+...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~---------------l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERA---------------LELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHH---------------HHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 35678899999999887765 56788888999999999999999999999999998765
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.21 Score=39.50 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=65.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC----HHHHHHHHHH
Q 044422 308 MIAGYAQHGLAVRAIDLFEEMMKQRVKPD--AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE----LDHYSCVVDL 381 (519)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~ 381 (519)
+..++-..|+.++|..+|++....|...+ ...+..+...+...|++++|..++++..... |+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 45567788999999999999988886654 3456667778889999999999999887532 33 2222334457
Q ss_pred HHHcCCHHHHHHHHHhC
Q 044422 382 LGRAGLLEEARDFIKQM 398 (519)
Q Consensus 382 ~~~~g~~~~A~~~~~~~ 398 (519)
+...|+.++|.+.+-..
T Consensus 85 L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 78889999998877543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.36 Score=43.01 Aligned_cols=134 Identities=15% Similarity=0.079 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHH-----
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSC----- 377 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~----- 377 (519)
...+.++..+.-.|.+.-....+++.++...+-+......|.+.-.+.|+.+.|...|++..+..-..+..+.+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 455677888888899999999999999877666778888888888899999999999998875333344433333
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 378 VVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
....|.-++++..|...+.++. ..+|.++-+-+.-+-++.-.|+..+|++.++.|++.-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~---------------~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEIL---------------RMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhheecccchHHHHHHHhhcc---------------ccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3344555677888888887764 2233333333334445556788999999999998864
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.12 Score=41.39 Aligned_cols=51 Identities=10% Similarity=0.127 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-HcCCCcCHHHHHHHHHHHH
Q 044422 333 VKPDAITFLGVISSCRHGGLVEEGKVYFDSMA-KHGLKPELDHYSCVVDLLG 383 (519)
Q Consensus 333 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~ 383 (519)
..|+..+..+++.+|+..+++..|.++.+... ..+++.+..+|..|++=..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 56778888888888888888888888888776 5677777778877776443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=1.1 Score=40.62 Aligned_cols=187 Identities=11% Similarity=0.035 Sum_probs=109.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHH
Q 044422 199 RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFT---FTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVAN 275 (519)
Q Consensus 199 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (519)
.+...+-.....+...|++++|.+.|+++...-..+ ... .-.+..++.+.+++++|...++...+..-.....-|-
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 344444455666778999999999999998753222 222 2456678899999999999999988763221122222
Q ss_pred HHHHHHHh--cC---------------CHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 044422 276 SLISMYCK--CG---------------NVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAI 338 (519)
Q Consensus 276 ~li~~~~~--~~---------------~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 338 (519)
..+.+.+. .+ +...+.+.+ ..+..++.-|-...-..+|...+..+...= -..
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~--------~~~~~li~~yP~S~ya~~A~~rl~~l~~~l---a~~ 177 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF--------RDFSKLVRGYPNSQYTTDATKRLVFLKDRL---AKY 177 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHH--------HHHHHHHHHCcCChhHHHHHHHHHHHHHHH---HHH
Confidence 23333221 11 111111111 233445555555555555555444443210 111
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKH--GLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
-..+..-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.+....+
T Consensus 178 -e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 -ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred -HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 113455577888888888888888752 22334556667888888888888888876654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.75 Score=38.84 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=102.7
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHH
Q 044422 266 GFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG----KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR---VKPDAI 338 (519)
Q Consensus 266 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~ 338 (519)
...|+...--.|..+..+.|+..+|...|.+... .|....-.+..+....+++..|...++++.+.. -.||.
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 3468888888899999999999999999998765 477888888889999999999999999988753 34553
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
-..+...+...|++..|...|+..... .|+...-......+.++|+.++|..-+..+
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 445677889999999999999999884 466655555666788899888776544433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.12 Score=47.39 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHH
Q 044422 338 ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPEL----DHYSCVVDLLGRAGLLEEARDFIKQMP-IYPNAVIWEAAES 412 (519)
Q Consensus 338 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~~~~ 412 (519)
..|...+....+.|++++|...|+.+.+.- |+. ..+-.+...|...|++++|...|+.+- ..|
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---------- 211 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---------- 211 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----------
Confidence 345555554456688888888888888632 432 456678888888999999998887661 111
Q ss_pred hhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 413 RLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 413 ~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
..|..+.++..++.+|...|++++|.++|+...+.-
T Consensus 212 ---~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 212 ---KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred ---CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 122334556667888888999999999999887754
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.042 Score=38.05 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=28.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 310 AGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
..+.+.|++++|...|++..+.. +-+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555555555543 11344444455555555555555555555544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.17 Score=40.49 Aligned_cols=97 Identities=12% Similarity=0.058 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH--hcCCCChhHHHHHHHHH
Q 044422 235 NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFN--NMHGKDIVSWNSMIAGY 312 (519)
Q Consensus 235 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~li~~~ 312 (519)
|..++..+|.++++.|+.+....+++.. .|+..+.. ...+. +. .-..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~---------~~~~~-------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGK---------KKEGD-------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCc---------cccCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence 4566777777777777777776666433 23332210 00000 11 01126888999999999
Q ss_pred HHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHc
Q 044422 313 AQHGLAVRAIDLFEEMMK-QRVKPDAITFLGVISSCRH 349 (519)
Q Consensus 313 ~~~g~~~~A~~~~~~m~~-~~~~p~~~t~~~ll~~~~~ 349 (519)
+.+|++..|+++++...+ -+++.+..+|..|++-+..
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999999999998766 4688888899999885443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.088 Score=49.70 Aligned_cols=124 Identities=12% Similarity=0.036 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---------CChhHHHHHHHHHHHcCChHHHHHHHHHHHH----CC-CCCCHH
Q 044422 273 VANSLISMYCKCGNVEEAVYVFNNMHG---------KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMK----QR-VKPDAI 338 (519)
Q Consensus 273 ~~~~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~~ 338 (519)
.|..|.+.|.-.|+++.|+...+.-.. ..-.++..+..++.-.|+++.|.+.|+.-.. .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344444444455555555544332110 1123445555555556666666665554321 11 112233
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH----c-CCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAK----H-GLKPELDHYSCVVDLLGRAGLLEEARDFIK 396 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~----~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (519)
..-+|-..|.-..++++|..++++-.. . ...-....+-+|..+|...|.-++|+.+.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344445555555555666555544331 0 011233444456666666666666655544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.05 Score=38.20 Aligned_cols=60 Identities=18% Similarity=-0.014 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-CHHHHHHHHcc
Q 044422 135 ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR-VIIDAYKVFEE 195 (519)
Q Consensus 135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~ 195 (519)
+.+|..+...+.+.|++++|...|...++.. +-+...|..+..++.+.| ++++|++.|++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 4445555555555556666665555555543 334445555555555555 45555555543
|
... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.21 Score=44.90 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=84.4
Q ss_pred HHHHHccCC--CCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----------
Q 044422 189 AYKVFEEMP--VRNVVSWTAIIAAFAQE-----WQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG----------- 250 (519)
Q Consensus 189 A~~~~~~m~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----------- 250 (519)
..+.|.... ++|-.+|-+.+..|... ++++=....++.|++-|+.-|..+|+.||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345555555 56777777777776554 556767777888999999999999999998876543
Q ss_pred -----CchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHhcCC
Q 044422 251 -----ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN-VEEAVYVFNNMHG 299 (519)
Q Consensus 251 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~ 299 (519)
+-+-+..++++|...|+.||..+-..|++++.+.+- ..+..++.-.|.+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 234578899999999999999999999999998875 4556666666653
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.13 Score=46.08 Aligned_cols=99 Identities=16% Similarity=0.218 Sum_probs=74.7
Q ss_pred HHHHHHHhcC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----------
Q 044422 289 EAVYVFNNMH--GKDIVSWNSMIAGYAQH-----GLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGG---------- 351 (519)
Q Consensus 289 ~a~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g---------- 351 (519)
.....|.... ++|-.+|-..+..+... +.++-....++.|.+.|+.-|..+|..|+..+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3444555555 46777777777776543 456666677788888898889999999888775542
Q ss_pred ------CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCC
Q 044422 352 ------LVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGL 387 (519)
Q Consensus 352 ------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 387 (519)
.-+-+..++++|..+|+.||..+-..|+.++.+.|-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 224478899999999999999999999999998875
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.85 Score=43.39 Aligned_cols=144 Identities=12% Similarity=0.016 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----cCC-CcCH
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMM----KQRVK-PDAITFLGVISSCRHGGLVEEGKVYFDSMAK----HGL-KPEL 372 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~-~p~~ 372 (519)
..|..|-..|.-.|+++.|+...+.=. +-|-+ .....+..+-.++.-.|.++.|.+.|+.-.. .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 356666666667788998887665422 22321 1245677788888889999999988876542 221 1233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 044422 373 DHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGL 452 (519)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~ 452 (519)
.+.-+|...|.-...+.+|..++.+-- .+-+.+.-.-....+++.|..+|...|.-+.|+.+.+.-.+...
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHL---------aIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHL---------AIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 445567777777778888888776431 00000111112345888899999999999999999888776654
Q ss_pred CCC
Q 044422 453 KTN 455 (519)
Q Consensus 453 ~~~ 455 (519)
+..
T Consensus 347 ev~ 349 (639)
T KOG1130|consen 347 EVN 349 (639)
T ss_pred HhC
Confidence 433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.14 Score=42.48 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=51.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCCHHHHH
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM--------PIYPNAVIWE 408 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~ 408 (519)
+...++..+...|+++.|..+.+.+.... +.+...|..+|.+|...|+..+|.+.|+.+ ++.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45566777888999999999999999854 457889999999999999999999998866 5666655443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.39 Score=42.35 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHH
Q 044422 305 WNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHG--LKPELDHYSCVVDLL 382 (519)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~ 382 (519)
+..++.-|-...-..+|...+..+.+.= -. .-..+..-|.+.|.+..|..-++.+.+.= ..........++.+|
T Consensus 113 ~~~li~~yP~S~y~~~A~~~l~~l~~~l---a~-~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y 188 (203)
T PF13525_consen 113 FEELIKRYPNSEYAEEAKKRLAELRNRL---AE-HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAY 188 (203)
T ss_dssp HHHHHHH-TTSTTHHHHHHHHHHHHHHH---HH-HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 3344444444444555544444443210 00 11123444566666666666666655421 111122334555666
Q ss_pred HHcCCHHH
Q 044422 383 GRAGLLEE 390 (519)
Q Consensus 383 ~~~g~~~~ 390 (519)
.+.|..+.
T Consensus 189 ~~l~~~~~ 196 (203)
T PF13525_consen 189 YKLGLKQA 196 (203)
T ss_dssp HHTT-HHH
T ss_pred HHhCChHH
Confidence 66665553
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.37 E-value=2.6 Score=40.04 Aligned_cols=285 Identities=14% Similarity=0.085 Sum_probs=172.4
Q ss_pred hhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHh--cCCChhhHHHHHHHHHHhCCCChHHH--HHHHHHH
Q 044422 104 VFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCG--STRNIRGGAPYQCLAIRTGFIANVYV--GSSLITL 179 (519)
Q Consensus 104 ~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~ 179 (519)
+...+.....+|-..|.++-.+-.+. +.-|..-...++.+-. -.|+.+.|.+-|+.|... |.... ...|.-.
T Consensus 88 LStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyle 163 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLE 163 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHH
Confidence 33444445555666666555544321 3446666666666533 358888888888888752 33322 2333333
Q ss_pred HHhCCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHHc---cC
Q 044422 180 YSKCRVIIDAYKVFEEMPV--R-NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSM-LEPNDF--TFTSILSACTG---SG 250 (519)
Q Consensus 180 ~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~---~g 250 (519)
--+.|+.+.|...-+..-. | -...+.+.+...+..|+|+.|+++++.-+... +.++.. .-..|+.+-+. ..
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 4567888888777766542 2 34578889999999999999999998776543 445543 22334443322 23
Q ss_pred CchHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044422 251 ALGQGRSAHCQTIRMGFFSYIQ-VANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMM 329 (519)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (519)
+...|...-.+..+ +.|+.. .--....++.+.|++.++-.+++.+-+..+..--..+..+.+.|+ .+..-+++..
T Consensus 244 dp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRlkRa~ 319 (531)
T COG3898 244 DPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRLKRAK 319 (531)
T ss_pred ChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHHHHHH
Confidence 44455554444443 344432 223345678899999999999998876433322223333445554 3333333332
Q ss_pred HC-CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH-HcCCHHHHHHHHHhC
Q 044422 330 KQ-RVKPD-AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLG-RAGLLEEARDFIKQM 398 (519)
Q Consensus 330 ~~-~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~ 398 (519)
+. .++|| ...-..+..+-...|++..|..--+...+ ..|....|..|.+.-- ..|+-.++...+.+.
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 21 23444 44556667777888998888777666665 5688888877776554 459999999888776
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.35 E-value=4.1 Score=42.12 Aligned_cols=293 Identities=11% Similarity=0.010 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChh---hHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIR---GGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYK 191 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 191 (519)
.+..|+++-.++...-..- ...|..+..-+.+..+.. .+..+-+++. ... -....|..+..-...+|+.+-|..
T Consensus 452 ~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls-~~~-~~~iSy~~iA~~Ay~~GR~~LA~k 528 (829)
T KOG2280|consen 452 LYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLS-AKL-TPGISYAAIARRAYQEGRFELARK 528 (829)
T ss_pred hhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhc-ccC-CCceeHHHHHHHHHhcCcHHHHHH
Confidence 4566666666664332222 455666666655543222 2222222221 111 233467777777777899999998
Q ss_pred HHccCCC--------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----------CC-CHHHHHHHHHH-------
Q 044422 192 VFEEMPV--------RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSML----------EP-NDFTFTSILSA------- 245 (519)
Q Consensus 192 ~~~~m~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----------~p-~~~t~~~ll~~------- 245 (519)
+++.=+. -+..-+...+.-+.+.|+.+-...++-.+++.-. .| ....|..+++-
T Consensus 529 Lle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~ 608 (829)
T KOG2280|consen 529 LLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLY 608 (829)
T ss_pred HHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhh
Confidence 8876552 1334456667777888888887777766654310 11 11122222220
Q ss_pred -HHccCCchHHHHHH--HHHH----HcCCCCcHHHHHHHHHHHHhcCCHHHHHH----------HHHhcCCC-----Chh
Q 044422 246 -CTGSGALGQGRSAH--CQTI----RMGFFSYIQVANSLISMYCKCGNVEEAVY----------VFNNMHGK-----DIV 303 (519)
Q Consensus 246 -~~~~g~~~~a~~~~--~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~----------~~~~~~~~-----~~~ 303 (519)
+.+.++-..+..-+ +... ..|..|+ .....+.+.+.....-..+ +.+.+... ...
T Consensus 609 d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dl 685 (829)
T KOG2280|consen 609 DFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDL 685 (829)
T ss_pred hhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 01111111111111 1100 0122222 2223333443333111111 11111111 123
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLG 383 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 383 (519)
+.+-.+.-+...|+-.+|.++-.+. --||...|..=+.+++..+++++.+++-+..+. +.-|.-++.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHH
Confidence 4555666677788888888876665 357888888888999999999877766555431 344666889999
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHH
Q 044422 384 RAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKL 446 (519)
Q Consensus 384 ~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 446 (519)
+.|+.++|.+++.+.+-.+ ....+|.+.|++.+|.++--+
T Consensus 756 ~~~n~~EA~KYiprv~~l~-----------------------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGLQ-----------------------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccCChH-----------------------HHHHHHHHhccHHHHHHHHHH
Confidence 9999999999998885221 247899999999999887544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.25 E-value=4.8 Score=43.88 Aligned_cols=88 Identities=11% Similarity=0.137 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHH----HccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH---H
Q 044422 233 EPNDFTFTSILSAC----TGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVS---W 305 (519)
Q Consensus 233 ~p~~~t~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~ 305 (519)
.|+...+..+..+| ...+.+++|.-+|+..-+. .-.+.+|..+|++++|..+-.++..+-... -
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a 1002 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILA 1002 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHH
Confidence 55665555554443 3345556655555443221 234566666777777777766665532222 2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q 044422 306 NSMIAGYAQHGLAVRAIDLFEEMM 329 (519)
Q Consensus 306 ~~li~~~~~~g~~~~A~~~~~~m~ 329 (519)
-.|+.-+...+++-+|-++..+..
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh
Confidence 456666667777777766666654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.11 Score=37.59 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhh-cCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 372 LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLL-LEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
..+|+.+...|...|++++|++.+++.- .. .+.+. ..|....++..+..+|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al--------~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKAL--------DI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH--------HH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567888899999999999999988761 00 00000 0011235788899999999999999999998643
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.18 E-value=2 Score=43.36 Aligned_cols=216 Identities=13% Similarity=0.095 Sum_probs=118.5
Q ss_pred HHHHHHHHHHhcCCChhh--HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHh
Q 044422 136 SFLSTAVTSCGSTRNIRG--GAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQ 213 (519)
Q Consensus 136 ~~~~~ll~~~~~~~~~~~--a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 213 (519)
-.++..=.+|.+-++..- ...-++++.+.|-.|+.... ...++-.|.+.+|.++|.+
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~------------------ 657 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR------------------ 657 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH------------------
Confidence 345555666666665443 33345566777877877643 3456778999999888864
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcC--C-CCcHHHHHHHHHHHHhcCCH---
Q 044422 214 EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMG--F-FSYIQVANSLISMYCKCGNV--- 287 (519)
Q Consensus 214 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~~~~--- 287 (519)
.|...+|+++|..|+-.+ ...-+...|..++-..+...-.+.. + .| .+..+.+..+|+.
T Consensus 658 ~G~enRAlEmyTDlRMFD----------~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP-----kaAAEmLiSaGe~~KA 722 (1081)
T KOG1538|consen 658 SGHENRALEMYTDLRMFD----------YAQEFLGSGDPKEKKMLIRKRADWARNIKEP-----KAAAEMLISAGEHVKA 722 (1081)
T ss_pred cCchhhHHHHHHHHHHHH----------HHHHHhhcCChHHHHHHHHHHHHHhhhcCCc-----HHHHHHhhcccchhhh
Confidence 444555555554443210 1111222232222222221111100 0 11 1122223333333
Q ss_pred ----------HHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 044422 288 ----------EEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGK 357 (519)
Q Consensus 288 ----------~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 357 (519)
+-+.++-.++...+..+...+..-+-+...+..|-++|..|-+ ...+++.+...+++.+|.
T Consensus 723 i~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAF 793 (1081)
T KOG1538|consen 723 IEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAF 793 (1081)
T ss_pred hhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhH
Confidence 3344444444444555555555556666777888888888742 234677778888888888
Q ss_pred HHHHHHHHcCCCcCH-----------HHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 358 VYFDSMAKHGLKPEL-----------DHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 358 ~~~~~m~~~~~~p~~-----------~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
.+-+...+ +.||+ .-|.---++|.+.|+-.+|.++++++
T Consensus 794 alAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 794 ALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred hhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 88777665 23333 22334456778888888888888877
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.45 Score=43.65 Aligned_cols=92 Identities=21% Similarity=0.192 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCcCHHHHHHH
Q 044422 305 WNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDA----ITFLGVISSCRHGGLVEEGKVYFDSMAKHG--LKPELDHYSCV 378 (519)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~l 378 (519)
|+..+..+.+.|++++|...|+.+.+.- |+. ..+-.+..+|...|+++.|...|+.+.+.- -+.....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3333333344455555555555555432 221 233444555555666666666666655321 01122333334
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 044422 379 VDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~~ 398 (519)
...+...|+.++|..+|+.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44555556666666655544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.77 Score=42.00 Aligned_cols=115 Identities=11% Similarity=-0.001 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC---CHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR---VIIDAYK 191 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~ 191 (519)
+.+..+.-++.-...+ +-|...|-.|-.+|...|+...|...|....+.- ++|...+..+..++.... ...++..
T Consensus 137 ~~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 3555555555544443 4477888888888888888888888888887753 456666666666554432 3456777
Q ss_pred HHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 044422 192 VFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSM 231 (519)
Q Consensus 192 ~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 231 (519)
+|+++.. .|+.+...|...+...|++.+|...|+.|.+..
T Consensus 215 ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 215 LLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 7877763 355666667777888888888888888887764
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.07 Score=38.56 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=9.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH
Q 044422 340 FLGVISSCRHGGLVEEGKVYFDS 362 (519)
Q Consensus 340 ~~~ll~~~~~~g~~~~a~~~~~~ 362 (519)
+..+..++...|++++|.+.+++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33334444444444444444443
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.86 E-value=1.9 Score=41.21 Aligned_cols=120 Identities=12% Similarity=0.022 Sum_probs=58.7
Q ss_pred HHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHH---------------HHHH
Q 044422 245 ACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSW---------------NSMI 309 (519)
Q Consensus 245 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~li 309 (519)
++.-.|+.++|..+--...+.. ..+....-.=..++--.++.+.+...|.+...-++..+ ..=.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 3445677777766655555442 11111111111223344566777777776655333221 1112
Q ss_pred HHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 310 AGYAQHGLAVRAIDLFEEMMKQ---RVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
.-..+.|++.+|.+.|.+.+.. +..|+...|.....+..+.|+.++|..--++..+
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 2234556666666666665542 2344444555555555556666666555555444
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.85 E-value=1.1 Score=35.58 Aligned_cols=65 Identities=12% Similarity=0.098 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCC
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFF 268 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 268 (519)
..+..++....+|+-+.-.+++..+.+.+ .++......+..+|.+.|+..++.+++.+.-+.|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44566777788888888888888776543 667777777888888888888888888888877743
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.80 E-value=1.2 Score=36.49 Aligned_cols=87 Identities=17% Similarity=0.130 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHH
Q 044422 305 WNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGR 384 (519)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 384 (519)
...++..+...+.......+++.+...+. .+....+.++..|++... .+....++. ..+.......++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34556666666667777777777666552 455566666666665432 333333331 1122223335666666
Q ss_pred cCCHHHHHHHHHhCC
Q 044422 385 AGLLEEARDFIKQMP 399 (519)
Q Consensus 385 ~g~~~~A~~~~~~~~ 399 (519)
.+.++++..++.+++
T Consensus 82 ~~l~~~~~~l~~k~~ 96 (140)
T smart00299 82 AKLYEEAVELYKKDG 96 (140)
T ss_pred cCcHHHHHHHHHhhc
Confidence 666666666666664
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.56 E-value=2.1 Score=34.94 Aligned_cols=85 Identities=18% Similarity=0.162 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChH
Q 044422 139 STAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVD 218 (519)
Q Consensus 139 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~ 218 (519)
..++..+.+.+.+.....+++.+...+ ..+...++.++..|++.+ .++....+.. ..+......+++.|.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 356666666667777777777777665 356667777777777653 3334444442 223333444566666666666
Q ss_pred HHHHHHHHH
Q 044422 219 MCLELYRMM 227 (519)
Q Consensus 219 ~a~~~~~~m 227 (519)
++..++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 666666554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.85 Score=43.46 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=67.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCC
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEP 418 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~ 418 (519)
.+..+..++.+.+++..|.+.-+..++.+ +++....-.=.++|...|+++.|...|+++ ++++|
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka---------------~k~~P 322 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKA---------------LKLEP 322 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHH---------------HHhCC
Confidence 46666777888888888888888887754 456666666677888888888888877755 45566
Q ss_pred CCchhHHHHHHHHhccCCHHHH-HHHHHHHHHC
Q 044422 419 ECAATHVQLANLYAGVRCWDQA-ARVRKLMKDK 450 (519)
Q Consensus 419 ~~~~~~~~L~~~~~~~g~~~~A-~~~~~~m~~~ 450 (519)
.|-.+-..|+..--+..++.+. .++|..|-..
T Consensus 323 ~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 323 SNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6666666667666666665554 6678887544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.34 Score=34.28 Aligned_cols=54 Identities=17% Similarity=0.114 Sum_probs=30.8
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 311 GYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 311 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
.|.+.+++++|.++++.+...+.. +...+......+...|+++.|...++...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455566666666666666554221 344444455556666666666666666665
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.37 E-value=5.2 Score=38.54 Aligned_cols=73 Identities=12% Similarity=0.011 Sum_probs=48.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHccCCCC-------ChhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044422 174 SSLITLYSKCRVIIDAYKVFEEMPVR-------NVVSWTAIIAAFAQ---EWQVDMCLELYRMMRNSMLEPNDFTFTSIL 243 (519)
Q Consensus 174 ~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 243 (519)
..++-+|-...+++..+++.+.+... ....-....-++-+ .|+.++|++++..+....-.++..||..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555677788888888888888742 11122233445556 788888888888865555677777887776
Q ss_pred HHH
Q 044422 244 SAC 246 (519)
Q Consensus 244 ~~~ 246 (519)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 655
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=1.9 Score=42.10 Aligned_cols=64 Identities=13% Similarity=-0.017 Sum_probs=51.7
Q ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHccCC--CCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 044422 167 IANVYVGSSLITLYSKCRVIIDAYKVFEEMP--VRNV----VSWTAIIAAFAQEWQVDMCLELYRMMRNS 230 (519)
Q Consensus 167 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 230 (519)
+.+...++.+..+|.+.|++++|+..|++.. .|+. .+|+.+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4456788888999999999999999998865 3443 35888889999999999999999888774
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.26 E-value=1.6 Score=43.47 Aligned_cols=135 Identities=12% Similarity=0.064 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhc
Q 044422 135 ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQE 214 (519)
Q Consensus 135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 214 (519)
....+.+++.+-+.|-++.|+++-.+-. .-.....+.|+++.|.++.++.. +...|..|.....++
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~ 360 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQ 360 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHc
Confidence 4447777777778888887777654321 12455667888888888887765 566888888888889
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 044422 215 WQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVF 294 (519)
Q Consensus 215 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 294 (519)
|+++-|.+.|.+... |..|+-.|.-.|+.+...++.+.....|- ++....++.-.|++++..+++
T Consensus 361 g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 361 GNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp TBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred CCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 999988888876643 45666777778888877777777776652 344555555667777777666
Q ss_pred HhcC
Q 044422 295 NNMH 298 (519)
Q Consensus 295 ~~~~ 298 (519)
.+..
T Consensus 426 ~~~~ 429 (443)
T PF04053_consen 426 IETG 429 (443)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 6543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.22 E-value=3.6 Score=36.20 Aligned_cols=171 Identities=14% Similarity=0.062 Sum_probs=80.6
Q ss_pred HHHHhCCCHHHHHHHHccCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044422 178 TLYSKCRVIIDAYKVFEEMPV--RN----VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGA 251 (519)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 251 (519)
..+...|++++|...|+.+.. |+ ..+.-.++.++.+.|+++.|...++++.+.-......-+...+.+.+....
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 344456666666666666542 11 223344555666666666666666665543211111122222222211111
Q ss_pred chHHHHHHHHHHHcCCCC-----cHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 044422 252 LGQGRSAHCQTIRMGFFS-----YIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFE 326 (519)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 326 (519)
..... .....+ -...+..++.-|=...-..+|...+..+.+.=...--.+..-|.+.|.+..|..-++
T Consensus 93 ~~~~~-------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~ 165 (203)
T PF13525_consen 93 IPGIL-------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQ 165 (203)
T ss_dssp HHHHH--------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred Cccch-------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 11100 000000 122444444444444445555444444332111112235667889999999999999
Q ss_pred HHHHCCCCCC----HHHHHHHHHHHHccCCHHHHH
Q 044422 327 EMMKQRVKPD----AITFLGVISSCRHGGLVEEGK 357 (519)
Q Consensus 327 ~m~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~ 357 (519)
.+.+. -|+ ......++.++.+.|..+.+.
T Consensus 166 ~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 166 YVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 98875 233 235577788888888877543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.21 E-value=4.7 Score=37.52 Aligned_cols=224 Identities=10% Similarity=0.064 Sum_probs=119.6
Q ss_pred HhcCChHHHHHHHHHHHHCC--CCCCHHH-----HHHHHHHHHccC-CchHHHHHHHHHHHc--------CCCCc-----
Q 044422 212 AQEWQVDMCLELYRMMRNSM--LEPNDFT-----FTSILSACTGSG-ALGQGRSAHCQTIRM--------GFFSY----- 270 (519)
Q Consensus 212 ~~~~~~~~a~~~~~~m~~~g--~~p~~~t-----~~~ll~~~~~~g-~~~~a~~~~~~~~~~--------~~~~~----- 270 (519)
.+.|+.+.|..++.+..... ..|+..- +-.+.......+ +++.|...+++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45677777777777765432 2333211 111222233444 777776665554432 12222
Q ss_pred HHHHHHHHHHHHhcCCHH---HHHHHHHhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044422 271 IQVANSLISMYCKCGNVE---EAVYVFNNMHG--KD-IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVI 344 (519)
Q Consensus 271 ~~~~~~li~~~~~~~~~~---~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 344 (519)
..++..++.+|...+..+ +|..+++.+.+ ++ +..+-.-+..+.+.++.+.+.+.+.+|...- ......+..++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 346778888888887754 45555555543 33 4555566677777899999999999998862 22334455555
Q ss_pred HHH---HccCCHHHHHHHHHHHHHcCCCcCHH-HHHH-HHHH-HHHcC--------CHHHHHHHHHhC----CCCCCHHH
Q 044422 345 SSC---RHGGLVEEGKVYFDSMAKHGLKPELD-HYSC-VVDL-LGRAG--------LLEEARDFIKQM----PIYPNAVI 406 (519)
Q Consensus 345 ~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~-li~~-~~~~g--------~~~~A~~~~~~~----~~~p~~~~ 406 (519)
..+ ... ....+...+..+....+.|... .... ++.. +...+ +.+...++++.. ....+..+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 544 332 3456667777766544555554 2111 1111 11111 144444455532 11111111
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHH
Q 044422 407 WEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLM 447 (519)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 447 (519)
-.++ -.....-+..+.+.++|++|.+.|+--
T Consensus 242 ~~a~----------~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 242 ASAI----------HTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHH----------HHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 1110 012222356778889999999999854
|
It is also involved in sporulation []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.19 E-value=2.3 Score=33.80 Aligned_cols=65 Identities=12% Similarity=0.189 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK 369 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 369 (519)
-.+..++.+...|+-+.-.+++.++.+. -.++....-.+..+|.+.|+..++.+++.+..+.|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3445566777777777777777777653 3556666777777888888888888888877777753
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.17 E-value=1.9 Score=42.83 Aligned_cols=159 Identities=13% Similarity=0.098 Sum_probs=104.4
Q ss_pred HHHHhcCChHHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 044422 209 AAFAQEWQVDMCLELYR--MMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN 286 (519)
Q Consensus 209 ~~~~~~~~~~~a~~~~~--~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 286 (519)
....-.++++.+.++.. ++. ..+ | ..-.+.++..+-+.|..+.|.++...- ..-.+...++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll-~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLL-PNI-P-KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhc-ccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCC
Confidence 44556788888777664 111 112 2 445677888888888888887765332 122355678899
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 044422 287 VEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKH 366 (519)
Q Consensus 287 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 366 (519)
++.|.++.++.. +...|..|.....+.|+++-|.+.|.+.. -|..|+-.|...|+.+...++.+.....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999988877655 56789999999999999999999988853 2556666677888888888887777766
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 044422 367 GLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP 399 (519)
Q Consensus 367 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 399 (519)
|- ++....++.-.|+.++..+++.+.+
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 51 5556666677788888888887775
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.17 E-value=7.8 Score=42.40 Aligned_cols=104 Identities=16% Similarity=0.112 Sum_probs=49.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCCHHHH
Q 044422 279 SMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAIT--FLGVISSCRHGGLVEEG 356 (519)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~g~~~~a 356 (519)
+.+.....+++|.-.|+...+- .-.+.+|..+|++++|+.+..+|... -|... --.|+.-+...+++-+|
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gkl-----ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGKL-----EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred HHHHHhccccHHHHHHHHhccH-----HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhH
Confidence 3333444555555555443321 12344555556666665555554321 12111 13445555556666666
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 357 KVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 357 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
-++..+... .| .-.+..|++...|++|..+....
T Consensus 1019 a~il~e~~s---d~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1019 AKILLEYLS---DP-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHhc---CH-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 555555432 11 12344455556666766666555
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.54 Score=44.72 Aligned_cols=120 Identities=15% Similarity=0.055 Sum_probs=79.6
Q ss_pred HHHHHhCCCHHHHHHHHccCCC------------------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 044422 177 ITLYSKCRVIIDAYKVFEEMPV------------------RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFT 238 (519)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m~~------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 238 (519)
.+.|.+.|++..|...|++... .-..+++.+..++.+.+++..|++..++.+..+ ++|.-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 4567777888777777666420 123467777888888888888888888887765 566666
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHhcC
Q 044422 239 FTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEE-AVYVFNNMH 298 (519)
Q Consensus 239 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~ 298 (519)
.-.-..+|...|+++.|+..|+.+.+.. +.|..+-+-++.+--+..+..+ ..++|..|-
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677778888888888888888887764 4444444555544444444332 355555554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.93 E-value=4 Score=41.77 Aligned_cols=187 Identities=11% Similarity=0.073 Sum_probs=103.5
Q ss_pred HHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHH-------HHHHHccCCchHHHH
Q 044422 186 IIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRN-SMLEPNDFTFTSI-------LSACTGSGALGQGRS 257 (519)
Q Consensus 186 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~t~~~l-------l~~~~~~g~~~~a~~ 257 (519)
+++|.++.+. .|.+..|..+.......-.++.|...|-+... .|++.-.. ...+ ...-+--|.+++|++
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 3444444433 46677888887777777777777777755533 22221100 0011 111122477888888
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 044422 258 AHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK-----DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR 332 (519)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 332 (519)
+|-.+-+. ...|..+.+.|++-.+.++++.-... -..+|+.+...++....+++|.+.|..-..
T Consensus 756 ~yld~drr---------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-- 824 (1189)
T KOG2041|consen 756 LYLDADRR---------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-- 824 (1189)
T ss_pred hhhccchh---------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 77666544 23466777888888888887754332 124677777777777777777777655321
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 333 VKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 333 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
-...+.++.+...++....+...+ +-+....-.+.+++.+.|.-++|.+.+-+.
T Consensus 825 -------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 825 -------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred -------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 112344455544444443333332 334444555556666666666666655544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.47 E-value=5.9 Score=37.11 Aligned_cols=128 Identities=12% Similarity=0.112 Sum_probs=79.6
Q ss_pred hhhHHHHHHHHHHhCCCChHHHHHHHHHHHHh--CC----CHHHHHHHHccCCC-------CChhHHHHHHHHHHhcCC-
Q 044422 151 IRGGAPYQCLAIRTGFIANVYVGSSLITLYSK--CR----VIIDAYKVFEEMPV-------RNVVSWTAIIAAFAQEWQ- 216 (519)
Q Consensus 151 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~-------~~~~~~~~li~~~~~~~~- 216 (519)
++....+++.|.+.|++-+..+|-+..-.... .. ....|..+++.|++ ++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566788888888888877766553333322 22 24578888888873 344456666554 3333
Q ss_pred ---hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCC--chHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 044422 217 ---VDMCLELYRMMRNSMLEPNDF--TFTSILSACTGSGA--LGQGRSAHCQTIRMGFFSYIQVANSLISM 280 (519)
Q Consensus 217 ---~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 280 (519)
.+.+..+|+.+.+.|+..+.. ..+.++..+..... ...+.++++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 466778888888878766443 33333333332222 34677888889999988877776655433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.83 Score=41.22 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=65.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhc
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGL--KPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLL 416 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~ 416 (519)
.|+.-+.. .+.|++..|.+.|....+..- .-....+-.|..++...|++++|..+|..+ -+.+.-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~------------~k~~P~ 210 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARV------------VKDYPK 210 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHH------------HHhCCC
Confidence 46665553 455678888888887775320 112233445788888888888888877765 112233
Q ss_pred CCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 417 EPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 417 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
.|..+..+.-|.....+.|+.++|..+|++..++
T Consensus 211 s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 211 SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4455667777888888888888888888887765
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.2 Score=31.49 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHH
Q 044422 373 DHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLA 428 (519)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~ 428 (519)
.++..+...|.+.|++++|.+++++. ++.+|+++.++..|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~---------------l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRA---------------LALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHHCcCCHHHHHHhh
Confidence 45778899999999999999988865 566777777766654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.23 E-value=2.3 Score=39.84 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCC--HHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 044422 318 AVRAIDLFEEMMKQRVKPDA--ITFLGVISSCRHGGL--VEEGKVYFDSMAKHGLKPELDHYSCVVD 380 (519)
Q Consensus 318 ~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~li~ 380 (519)
.+.+..+|+.+.+.|+..+. .....++..+..... ..++..+++.+.+.|+++....|..+.-
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 35566777777777765442 233333332222222 4467778888888888877777765543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.18 E-value=8.5 Score=37.10 Aligned_cols=52 Identities=12% Similarity=-0.027 Sum_probs=24.7
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC
Q 044422 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197 (519)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 197 (519)
..++.+.|+++............ .++...|.++... +.++++++....+...
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r 56 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKAR 56 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHH
Confidence 34555666666544433332211 1234444444333 5666666665555543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=2.7 Score=35.03 Aligned_cols=82 Identities=4% Similarity=-0.063 Sum_probs=47.3
Q ss_pred cCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHH
Q 044422 147 STRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLEL 223 (519)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~ 223 (519)
+.|+++.|..+|..+.-.+ .-+..-+..|..++-..+++++|+..|...- ..|+..+-....++...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHH
Confidence 5566666666666665544 2244445556666666666666666665432 33444455555666666666666666
Q ss_pred HHHHHH
Q 044422 224 YRMMRN 229 (519)
Q Consensus 224 ~~~m~~ 229 (519)
|.....
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 655544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.95 E-value=13 Score=38.63 Aligned_cols=136 Identities=12% Similarity=-0.089 Sum_probs=84.4
Q ss_pred HCCCCCCHHHHHH-----HHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC---CHHHHHHHHccCCC-
Q 044422 128 RERLKVDASFLST-----AVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR---VIIDAYKVFEEMPV- 198 (519)
Q Consensus 128 ~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~- 198 (519)
.-|++.+..-|.. ++.-+...+.+..|.++-..+-..-.. ...+|.....-+.+.. +-+.+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4566666665544 466667778888888887766321111 1566777766666653 33344455555555
Q ss_pred -CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 199 -RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLE----PNDFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 199 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
....+|..+.+-.-..|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+-...++-++..
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 45667888888888899999998887543332211 1223355566677777887777776665554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.90 E-value=2.6 Score=44.05 Aligned_cols=173 Identities=13% Similarity=0.155 Sum_probs=93.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILS----ACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLIS 279 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 279 (519)
...-++...+...++-|+.+-+. .+. |..+...+.. .+.+.|++++|..-|-+-... +.|. .+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 44456666666667777665432 222 3333333333 334567777776655444332 1222 2344
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHH
Q 044422 280 MYCKCGNVEEAVYVFNNMHGK---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRV-KPDAITFLGVISSCRHGGLVEE 355 (519)
Q Consensus 280 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~g~~~~ 355 (519)
-|....+..+-..+++.+.+. +...-..|+.+|.+.++.++-.++.+.-. .|. ..| ....+..|.+.+-.+.
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHH
Confidence 445555555555556555442 34455667777777777777766665543 221 112 3344556666666666
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 044422 356 GKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP 399 (519)
Q Consensus 356 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 399 (519)
|..+-..... .......+ +-..|++++|.+++..++
T Consensus 482 a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 6555443322 23333333 344578899999999886
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.80 E-value=5.8 Score=36.44 Aligned_cols=145 Identities=11% Similarity=0.069 Sum_probs=79.8
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 044422 289 EAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGL 368 (519)
Q Consensus 289 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 368 (519)
...+.++....+....--.-.......|++.+|..+|+........ +...-..+..+|...|+.+.|..++..+...--
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 4444444444432222222233445566666666666666554322 233444556666666666666666666542110
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHH
Q 044422 369 KPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
... +.. .....+++.++...|+.. .+++.+..+|+|...-..|...|...|+.+.|.+.+=.+.
T Consensus 200 ~~~---~~~----------l~a~i~ll~qaa~~~~~~---~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 200 DKA---AHG----------LQAQIELLEQAAATPEIQ---DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred hhH---HHH----------HHHHHHHHHHHhcCCCHH---HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 000 100 111233334443333332 3455667888898888999999999999999999776665
Q ss_pred HC
Q 044422 449 DK 450 (519)
Q Consensus 449 ~~ 450 (519)
++
T Consensus 264 ~~ 265 (304)
T COG3118 264 RR 265 (304)
T ss_pred Hh
Confidence 54
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.69 E-value=8.5 Score=35.81 Aligned_cols=158 Identities=11% Similarity=0.015 Sum_probs=76.7
Q ss_pred HHHHHHHHHHccCCchH---HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHH
Q 044422 238 TFTSILSACTGSGALGQ---GRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK---DIVSWNSMIAG 311 (519)
Q Consensus 238 t~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~ 311 (519)
++..++.++...+..+. |..+++.+... .+....++-.-++.+.+.++.+.+.+++..|... ....+..++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 44555566666555443 33344444322 2223445545555555666677777766666542 22344444443
Q ss_pred H---HHcCChHHHHHHHHHHHHCCCCCCHH-HHHHH-H---HHHHcc------CCHHHHHHHHHHHHH-cCCCcCHHHHH
Q 044422 312 Y---AQHGLAVRAIDLFEEMMKQRVKPDAI-TFLGV-I---SSCRHG------GLVEEGKVYFDSMAK-HGLKPELDHYS 376 (519)
Q Consensus 312 ~---~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~l-l---~~~~~~------g~~~~a~~~~~~m~~-~~~~p~~~~~~ 376 (519)
+ .. .....|...++.+....+.|... ....+ + -..... ++++....+++...+ .+-+.+..+-.
T Consensus 165 i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 165 IKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3 22 23345666666665554554443 11111 1 111121 124555555664442 33344444433
Q ss_pred HHH-------HHHHHcCCHHHHHHHHHh
Q 044422 377 CVV-------DLLGRAGLLEEARDFIKQ 397 (519)
Q Consensus 377 ~li-------~~~~~~g~~~~A~~~~~~ 397 (519)
++. ..+.+.+++++|.+.|+-
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 332 334567899999998873
|
It is also involved in sporulation []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.66 E-value=13 Score=37.68 Aligned_cols=158 Identities=12% Similarity=0.090 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHHc----cCCchHHHHHHHHHHHcCCCCcHHH
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNSM-LEPND-----FTFTSILSACTG----SGALGQGRSAHCQTIRMGFFSYIQV 273 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 273 (519)
...++...+-.|+-+.+++.+.+-.+.+ +.-.. .+|..++..++. ..+.+.|.++++.+.+. .|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3445555556667777766666554322 21111 123333333322 33455666666666654 344333
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044422 274 AN-SLISMYCKCGNVEEAVYVFNNMHGK-------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVIS 345 (519)
Q Consensus 274 ~~-~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 345 (519)
|. --.+.+...|++++|.+.|+..... ....+--+.-++.-.+++++|.+.|..+.+.. .-+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 32 2234455566677777776654421 11233344445556666666666666666542 223333333333
Q ss_pred HH-HccCCH-------HHHHHHHHHHH
Q 044422 346 SC-RHGGLV-------EEGKVYFDSMA 364 (519)
Q Consensus 346 ~~-~~~g~~-------~~a~~~~~~m~ 364 (519)
+| ...|+. ++|..+|.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 22 234444 55555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.38 E-value=5.7 Score=33.42 Aligned_cols=135 Identities=10% Similarity=-0.002 Sum_probs=87.7
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--CHHHHHHHHccC
Q 044422 119 LISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR--VIIDAYKVFEEM 196 (519)
Q Consensus 119 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m 196 (519)
.++.++.+.+.|++|+...+..++..+.+.|.+... ..++..++-+|.......+-.+.... -.+-|.+++.++
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 456667777888999999999999999999886643 34556666666655554443333322 134455555555
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc
Q 044422 197 PVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRM 265 (519)
Q Consensus 197 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 265 (519)
. ..+..++..+...|++-+|+++.+...... .++ ...++.+..+.+|...-..++....+.
T Consensus 89 ~----~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~---~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 89 G----TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVP---ARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCC---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 246677788888999999998887653322 122 244667777777766666666655543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.99 E-value=12 Score=35.85 Aligned_cols=267 Identities=14% Similarity=0.093 Sum_probs=156.5
Q ss_pred HHHHHHHHH--hCCCHHHHHHHHccCC---CCChhHHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHH
Q 044422 173 GSSLITLYS--KCRVIIDAYKVFEEMP---VRNVVSWTAIIAA--FAQEWQVDMCLELYRMMRNSMLEPNDF--TFTSIL 243 (519)
Q Consensus 173 ~~~li~~~~--~~g~~~~A~~~~~~m~---~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~--t~~~ll 243 (519)
|..|-.++. -.|+-..|.++-.+.. ..|....-.++.+ -.-.|+++.|.+-|+.|.. .|... -...|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHH
Confidence 444544443 3577777777766543 4555555555543 4457999999999999976 23322 233344
Q ss_pred HHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhH--HHHHHHHHH---
Q 044422 244 SACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG-----KDIVS--WNSMIAGYA--- 313 (519)
Q Consensus 244 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~--~~~li~~~~--- 313 (519)
-..-+.|..+.|...-+..-..- +--.....+.+...|..|+++.|+++++.-.. +++.- --.|+.+-.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 44467888888888777766543 33356788999999999999999999986543 44421 122332211
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHH--
Q 044422 314 QHGLAVRAIDLFEEMMKQRVKPDAITF-LGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEE-- 390 (519)
Q Consensus 314 ~~g~~~~A~~~~~~m~~~~~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-- 390 (519)
-.-+...|...-.+..+ +.||-.-- ..-..++.+.|+..++-.+++.+-+.. |.+..+. +..+.+.|+...
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gdta~dR 314 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGDTALDR 314 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCCcHHHH
Confidence 12345555555444433 56664332 223457889999999999999998754 5444443 223455554221
Q ss_pred HHH--HHHhCCCCCCHH--HHHHH----------------HHhhhcCCCCchhHHHHHHHHhcc-CCHHHHHHHHHHHHH
Q 044422 391 ARD--FIKQMPIYPNAV--IWEAA----------------ESRLLLEPECAATHVQLANLYAGV-RCWDQAARVRKLMKD 449 (519)
Q Consensus 391 A~~--~~~~~~~~p~~~--~~~~~----------------~~~~~~~~~~~~~~~~L~~~~~~~-g~~~~A~~~~~~m~~ 449 (519)
... -++.| +||.. ..... +.+....| ....|..|..+-... |+-.++...+-+-.+
T Consensus 315 lkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 315 LKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 111 12233 44422 12111 22222233 345666666665444 888888887777665
Q ss_pred CCC
Q 044422 450 KGL 452 (519)
Q Consensus 450 ~g~ 452 (519)
.--
T Consensus 392 APr 394 (531)
T COG3898 392 APR 394 (531)
T ss_pred CCC
Confidence 533
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.97 E-value=7.5 Score=37.82 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC-C-CChhHH-HHHHHH
Q 044422 236 DFTFTSILSACTGSGALGQGRSAHCQTIRMG-FFSYIQVANSLISMYCKCGNVEEAVYVFNNMH-G-KDIVSW-NSMIAG 311 (519)
Q Consensus 236 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~-~~~~~~-~~li~~ 311 (519)
...|...++...+..-++.|..+|-.+.+.| +.+++.+++++|..++. |+..-|..+|+.-. . +|...| +..+.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4567788888888888999999999999888 66788899999988774 67888888888433 2 454443 556777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHc
Q 044422 312 YAQHGLAVRAIDLFEEMMKQRVKPD--AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRA 385 (519)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 385 (519)
+...++-..|..+|+..... +..+ ...|..+|+.-..-|++..+..+-++|.+ +-|...+...+...|.-.
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik 548 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhh
Confidence 78889999999999855432 2222 45788999988899999988888888877 456666666666666543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=91.97 E-value=13 Score=36.32 Aligned_cols=339 Identities=12% Similarity=0.079 Sum_probs=180.2
Q ss_pred ccCccchhhHHhhhhhcCCC---CCCCchHHHHHHHHHHHhhccccccchhhhcccC---CCCCCCCchhhhhhhhhcCC
Q 044422 39 ISSSKSLHKALRVLDIISPR---TRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDF---TGTNSTFGSSNVFDQLLDTP 112 (519)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 112 (519)
+.+.|++.++..+++.+.+. +.-.-+...|+.++-.+.++ ++-.+ .+.+....+
T Consensus 138 LIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS---------YfLEl~e~~s~dl~pdy----------- 197 (549)
T PF07079_consen 138 LIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS---------YFLELKESMSSDLYPDY----------- 197 (549)
T ss_pred HHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH---------HHHHHHHhcccccChHH-----------
Confidence 55899999999999887532 12224556666644333222 11111 011111222
Q ss_pred ccCHHHHHHHHHHHhHC------CCCCCHHHHHHHHHHHhcC--CChhhHHHHHHHHHHhCCCChHH-HHHHHHHHHHhC
Q 044422 113 VVDVEKLISMHHDLHRE------RLKVDASFLSTAVTSCGST--RNIRGGAPYQCLAIRTGFIANVY-VGSSLITLYSKC 183 (519)
Q Consensus 113 ~~~~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~ 183 (519)
++.++-...+|... .+-|-......++....-. ....--.+++..-...-+.|+-. +...++..+..
T Consensus 198 ---YemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~- 273 (549)
T PF07079_consen 198 ---YEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS- 273 (549)
T ss_pred ---HHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc-
Confidence 22233333333221 2445555555555543322 12222333333333444556543 44555555554
Q ss_pred CCHHHHHHHHccCC--------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHH-
Q 044422 184 RVIIDAYKVFEEMP--------VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSI-------LSACT- 247 (519)
Q Consensus 184 g~~~~A~~~~~~m~--------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l-------l~~~~- 247 (519)
+.+++..+-+.+. +.=+.++..++....+.++..+|.+.+.-++.- .|+...-.-+ -+..|
T Consensus 274 -~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~ 350 (549)
T PF07079_consen 274 -DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCE 350 (549)
T ss_pred -ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhc
Confidence 3344333333221 344668888999999999999999888776553 3443321111 12222
Q ss_pred ccC---CchHHHHHHHHHHHcCCCCcHHHHHHHH---HHHHhcCC-HHHHHHHHHhcCC---CChhHHHHHH----HHHH
Q 044422 248 GSG---ALGQGRSAHCQTIRMGFFSYIQVANSLI---SMYCKCGN-VEEAVYVFNNMHG---KDIVSWNSMI----AGYA 313 (519)
Q Consensus 248 ~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~li----~~~~ 313 (519)
... +..+-..+|+......+... ..-.-|+ .-+-+.|. -++|+++++.+.+ -|...-|.+. .+|.
T Consensus 351 DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~ 429 (549)
T PF07079_consen 351 DDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYK 429 (549)
T ss_pred chHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 111 22233445555554432211 1111222 12233343 7788888887764 3444333332 2222
Q ss_pred H---cCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHH--HHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHH
Q 044422 314 Q---HGLAVRAIDLFEEMMKQRVKPDA----ITFLGVISS--CRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGR 384 (519)
Q Consensus 314 ~---~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 384 (519)
+ ...+..-+++-+-+.+.|++|-. ..-|.|.+| +...|++.++.-.-.-+.+ +.|++.+|..+.-++..
T Consensus 430 qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e 507 (549)
T PF07079_consen 430 QALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLME 507 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHH
Confidence 2 23345555555566677877643 334444443 4567888887766555555 78999999999999999
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHH
Q 044422 385 AGLLEEARDFIKQMPIYPNAVIWEA 409 (519)
Q Consensus 385 ~g~~~~A~~~~~~~~~~p~~~~~~~ 409 (519)
..++++|..++..++ |+...|++
T Consensus 508 ~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 508 NKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HhhHHHHHHHHHhCC--CchhhHHH
Confidence 999999999999996 56655544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.95 E-value=13 Score=36.27 Aligned_cols=124 Identities=15% Similarity=0.171 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 044422 271 IQVANSLISMYCKCGNVEEAVYVFNNMHG-----KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAIT-FLGVI 344 (519)
Q Consensus 271 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll 344 (519)
..+|-..|+.-.+..-++.|..+|-++.+ +++..++++|.-++ .|+..-|.++|+--... -||... ....+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 45777888888888889999999998875 57788999998666 57888999999875543 234333 34556
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 345 SSCRHGGLVEEGKVYFDSMAKHGLKPE--LDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 345 ~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
.-+...++-+.|..+|+..... +..+ ...|..+|.-=..-|+...+..+=+.+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 6677889999999999966532 2223 568999999889999998887766655
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.92 E-value=2.2 Score=39.61 Aligned_cols=161 Identities=11% Similarity=0.074 Sum_probs=105.6
Q ss_pred hcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHccCCHHH
Q 044422 283 KCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITF----LGVISSCRHGGLVEE 355 (519)
Q Consensus 283 ~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~----~~ll~~~~~~g~~~~ 355 (519)
..|++.+|-..++++.+ .|..+++-.=.++..+|+...-...+++.... ..||...| ..+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45677777777777765 36677777778888888888888888877654 23333222 233334567788888
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccC
Q 044422 356 GKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVR 435 (519)
Q Consensus 356 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g 435 (519)
|++.-++..+.+ +.|.-.-.++...+-..|+..++.++..+-.. .|.. -.-.-...|..-...+...+
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted-----~Wr~------s~mlasHNyWH~Al~~iE~a 261 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTED-----DWRQ------SWMLASHNYWHTALFHIEGA 261 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhccc-----chhh------hhHHHhhhhHHHHHhhhccc
Confidence 888887777643 33555556677777778888888888775521 1111 00112346666777788889
Q ss_pred CHHHHHHHHHHHHHCCCCCCC
Q 044422 436 CWDQAARVRKLMKDKGLKTNP 456 (519)
Q Consensus 436 ~~~~A~~~~~~m~~~g~~~~~ 456 (519)
.++.|+++|++=.-..++.+.
T Consensus 262 eye~aleIyD~ei~k~l~k~D 282 (491)
T KOG2610|consen 262 EYEKALEIYDREIWKRLEKDD 282 (491)
T ss_pred chhHHHHHHHHHHHHHhhccc
Confidence 999999999876554455554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.35 Score=28.76 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=22.1
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHH
Q 044422 423 THVQLANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 423 ~~~~L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
+|..|..+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678999999999999999999954
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.76 E-value=1.9 Score=39.57 Aligned_cols=75 Identities=13% Similarity=0.204 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCcCHHHHHH
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK-----HGLKPELDHYSC 377 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 377 (519)
.++..++..+...|+++.+...++++.... +-|...|..++.+|.+.|+...|...|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345555555555566666666665555543 22555555666666666665555555555442 344444444443
Q ss_pred H
Q 044422 378 V 378 (519)
Q Consensus 378 l 378 (519)
.
T Consensus 233 y 233 (280)
T COG3629 233 Y 233 (280)
T ss_pred H
Confidence 3
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.05 E-value=8.5 Score=32.39 Aligned_cols=133 Identities=9% Similarity=0.084 Sum_probs=71.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHhcC
Q 044422 221 LELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN--VEEAVYVFNNMH 298 (519)
Q Consensus 221 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~ 298 (519)
.+.+..+.+.+++|+...+..++..+.+.|++... .++...++-+|.......+-.+..... ..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 34445555677777777888888888887775543 334444444444333333322222111 233444444433
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 299 GKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 299 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
..+..+++.+...|++-+|.++.+..... +......++++-...++...-..+++-..+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24455667777778888887777664322 111224456666666665555555554443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.97 E-value=4.3 Score=32.23 Aligned_cols=88 Identities=9% Similarity=0.021 Sum_probs=50.4
Q ss_pred HHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCc
Q 044422 179 LYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND---FTFTSILSACTGSGAL 252 (519)
Q Consensus 179 ~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~ 252 (519)
+.+..|+++.|++.|.+.. +.....||.-..++.-+|+.++|++-+++..+..-.-+. ..|..-...|-..|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 3455666666666666543 345666777777777777777777766666543211122 2233333345556666
Q ss_pred hHHHHHHHHHHHcC
Q 044422 253 GQGRSAHCQTIRMG 266 (519)
Q Consensus 253 ~~a~~~~~~~~~~~ 266 (519)
+.|..=|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666665555
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=90.75 E-value=20 Score=36.21 Aligned_cols=146 Identities=9% Similarity=0.020 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHhHCC-CCCCH-----HHHHHHHHHHhc----CCChhhHHHHHHHHHHhCCCChHHHHHHH-HHHHHhC
Q 044422 115 DVEKLISMHHDLHRER-LKVDA-----SFLSTAVTSCGS----TRNIRGGAPYQCLAIRTGFIANVYVGSSL-ITLYSKC 183 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~ 183 (519)
|-+..++.+....+.+ ++-.. -.|..++..+.. ..+.+.|.+++..+.+. -|+...|... .+.+...
T Consensus 203 dR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 203 DRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLK 280 (468)
T ss_pred cHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHh
Confidence 6677777777665532 22111 124444444333 34566778888777665 4555544332 3445567
Q ss_pred CCHHHHHHHHccCCC-------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCCc---
Q 044422 184 RVIIDAYKVFEEMPV-------RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSAC-TGSGAL--- 252 (519)
Q Consensus 184 g~~~~A~~~~~~m~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~--- 252 (519)
|++++|++.|+.... -....+--+.-++.-..+|++|.+.|..+.+.. ..+..+|..+..+| ...|+.
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhh
Confidence 888888888886542 122234445556677788888888888887654 33455555544444 345555
Q ss_pred ----hHHHHHHHHHH
Q 044422 253 ----GQGRSAHCQTI 263 (519)
Q Consensus 253 ----~~a~~~~~~~~ 263 (519)
++|.+++.+..
T Consensus 360 ~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 360 KEHKKEAEELFRKVP 374 (468)
T ss_pred hhhHHHHHHHHHHHH
Confidence 66666666554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.27 E-value=13 Score=33.41 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=34.2
Q ss_pred HhCCCHHHHHHHHccCCC--C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044422 181 SKCRVIIDAYKVFEEMPV--R----NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACT 247 (519)
Q Consensus 181 ~~~g~~~~A~~~~~~m~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 247 (519)
.+.|++++|.+.|+.+.. | ...+--.++-++-+.++++.|+..+++....-......-|..-|.+++
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 345666666666666652 1 122334445566666666666666666655322222233444444443
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=90.17 E-value=6.3 Score=29.64 Aligned_cols=88 Identities=10% Similarity=-0.045 Sum_probs=62.2
Q ss_pred ChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044422 150 NIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRN 229 (519)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 229 (519)
..++|..|-+++...+-. ...+--+-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 355666677666554422 33333344556788999999999999999999999887754 477888888888888877
Q ss_pred CCCCCCHHHHHH
Q 044422 230 SMLEPNDFTFTS 241 (519)
Q Consensus 230 ~g~~p~~~t~~~ 241 (519)
.| .|...+|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 77 566666543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.10 E-value=3.9 Score=37.62 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 044422 271 IQVANSLISMYCKCGNVEEAVYVFNNMHGK---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMK-----QRVKPDAITFLG 342 (519)
Q Consensus 271 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~t~~~ 342 (519)
..++..++..+...|+.+.+.+.++.+... +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456677777777777777777777776542 556777788888888888888777777655 366666665555
Q ss_pred HHHH
Q 044422 343 VISS 346 (519)
Q Consensus 343 ll~~ 346 (519)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.95 E-value=4.1 Score=36.91 Aligned_cols=91 Identities=23% Similarity=0.263 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-cCCCc-CHHHHHHH
Q 044422 305 WNSMIAGYAQHGLAVRAIDLFEEMMKQR----VKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK-HGLKP-ELDHYSCV 378 (519)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~p-~~~~~~~l 378 (519)
|+.-+. +.+.|++..|...|....+.. ..||. +-.|..++...|+++.|..+|..+.+ .+-.| -+..+--|
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 444443 334555666666666666542 22332 33456666666777777666666653 22222 23455556
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 044422 379 VDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~~ 398 (519)
..+..+.|+.++|..+|+++
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 66666677777777666665
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.65 Score=29.06 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=28.4
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCC
Q 044422 422 ATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNP 456 (519)
Q Consensus 422 ~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 456 (519)
.++..|..+|...|++++|.++|++..+.. |+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD--PDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCC
Confidence 467789999999999999999999998864 444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.31 E-value=18 Score=33.39 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=24.4
Q ss_pred hcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC
Q 044422 146 GSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197 (519)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 197 (519)
...|++..|..+|....... +-+...--.+..+|...|+.+.|..++..++
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455555555555554432 1223334444555555555555555555554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.12 E-value=23 Score=34.33 Aligned_cols=167 Identities=11% Similarity=-0.080 Sum_probs=101.6
Q ss_pred chHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHH-
Q 044422 63 TKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTA- 141 (519)
Q Consensus 63 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l- 141 (519)
|....+-.+=..|+-.-+....+.+.-..+.+.++......+.+...-....+.+.|+..|++-...+ |+...-.+.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~ 243 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSAS 243 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHh
Confidence 33333333333455444555566677777777777777777777777766668888888888876543 333322111
Q ss_pred --H----------HHHhcCCChhhHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHH-
Q 044422 142 --V----------TSCGSTRNIRGGAPYQCLAIRT---GFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWT- 205 (519)
Q Consensus 142 --l----------~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~- 205 (519)
. .-..+.|++..|.+.+...+.. ..+|+...|-.......+.|+.++|+.--+....-|..-.-
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 1 1123557777777777776643 24455666766677777778888877777766655544222
Q ss_pred --HHHHHHHhcCChHHHHHHHHHHHHCC
Q 044422 206 --AIIAAFAQEWQVDMCLELYRMMRNSM 231 (519)
Q Consensus 206 --~li~~~~~~~~~~~a~~~~~~m~~~g 231 (519)
.-..++.-.++|++|.+-|++..+..
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 22345555677777777777765543
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=89.08 E-value=5.7 Score=36.44 Aligned_cols=64 Identities=8% Similarity=-0.050 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 131 LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRT-GFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 131 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
-.++..+...++..+++.+++..-.++|...... +...|...|..+|+.....|+..-..++.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3445555556666666666666666655554433 333455555555555555555555555444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=88.99 E-value=15 Score=34.79 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCHHHH-
Q 044422 275 NSLISMYCKCGNVEEAVYVFNNMHG-------K--DIVSWNSMIAGYAQHGLAVRAIDLFEEMMK----QRVKPDAITF- 340 (519)
Q Consensus 275 ~~li~~~~~~~~~~~a~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~t~- 340 (519)
.++..++...+.++++++.|+...+ + ....|..+-+.|.+..++++|.-+..+..+ -++.--..-|
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3444555555556666665554332 1 123555566666666666666555444332 1211111111
Q ss_pred ----HHHHHHHHccCCHHHHHHHHHHHH----HcCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 341 ----LGVISSCRHGGLVEEGKVYFDSMA----KHGLKP-ELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 341 ----~~ll~~~~~~g~~~~a~~~~~~m~----~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
-.+.-++...|.+-.|.+.-++.. ..|-.+ -......+.+.|...|+.+.|+.-|++.
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 122234445555555555544433 233222 1223344555555566666655555544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.58 E-value=14 Score=38.95 Aligned_cols=149 Identities=9% Similarity=-0.027 Sum_probs=78.7
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhCCCChH--HHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCCh
Q 044422 140 TAVTSCGSTRNIRGGAPYQCLAIRTGFIANV--YVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQV 217 (519)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~ 217 (519)
.-+....+..-++.|..+- ...+..++. .......+-+.+.|++++|...+-+-...-.. ..+|.-|......
T Consensus 339 ~kL~iL~kK~ly~~Ai~LA---k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~I 413 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLA---KSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRI 413 (933)
T ss_pred HHHHHHHHhhhHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHH
Confidence 3444444444555444432 333333332 23334445556678888887776554321111 1245555666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 044422 218 DMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNM 297 (519)
Q Consensus 218 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 297 (519)
..-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-+++|..+-...
T Consensus 414 knLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 6677777777777754 44445678888888887777666554433 2211 001234444455555555555444433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.30 E-value=23 Score=33.31 Aligned_cols=149 Identities=11% Similarity=0.052 Sum_probs=106.1
Q ss_pred HccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHH----HHHHHHHHcCChH
Q 044422 247 TGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWN----SMIAGYAQHGLAV 319 (519)
Q Consensus 247 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~----~li~~~~~~g~~~ 319 (519)
-..|+..+|...++++.+. .|.|...++-.-++|.-.|+...-...++++.. +|...|. ...-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3568888888889888876 477778888888899999999988888888764 4554433 2334556889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044422 320 RAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKH---GLKPELDHYSCVVDLLGRAGLLEEARDFIK 396 (519)
Q Consensus 320 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (519)
+|.+.-++..+-+ +.|...-......+...|+..++.++..+-.+. +...-...|=...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998877654 346666677777788889999999887765431 111112223334445666788899998887
Q ss_pred h
Q 044422 397 Q 397 (519)
Q Consensus 397 ~ 397 (519)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.13 E-value=1.3 Score=26.25 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMM 227 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m 227 (519)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666653
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.05 E-value=8.1 Score=33.09 Aligned_cols=97 Identities=14% Similarity=0.080 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHH---cCCCcCHHHHHH
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDA--ITFLGVISSCRHGGLVEEGKVYFDSMAK---HGLKPELDHYSC 377 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~ 377 (519)
..+..+..-|++.|+.++|.+.|.++.+....|.. ..+..+|......+++..+...+.+... .|-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35667777888888888888888888776544432 3456667777778888888877776653 222222222112
Q ss_pred HHH--HHHHcCCHHHHHHHHHhCC
Q 044422 378 VVD--LLGRAGLLEEARDFIKQMP 399 (519)
Q Consensus 378 li~--~~~~~g~~~~A~~~~~~~~ 399 (519)
... .+...|++.+|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 222 2345689999999888773
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.92 E-value=7.3 Score=33.36 Aligned_cols=61 Identities=8% Similarity=0.054 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCchHHHHHHHHHH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPN--DFTFTSILSACTGSGALGQGRSAHCQTI 263 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 263 (519)
.+..+...|.+.|+.+.|++.|.++......+. ...+-.+|+...-.+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344455555555555555555555544332222 1234444555555555555555444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.46 E-value=39 Score=35.11 Aligned_cols=67 Identities=7% Similarity=-0.041 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHh-CCCC--------hHHHHHHHHHHHHhCCCHHHHHHHHccCCCCC
Q 044422 132 KVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRT-GFIA--------NVYVGSSLITLYSKCRVIIDAYKVFEEMPVRN 200 (519)
Q Consensus 132 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 200 (519)
.|.+..|..+.......-+++.|++.|-+.... |++. +...-.+=|.+| -|++++|++++-+|..+|
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh
Confidence 578888888888877777788888777544321 2211 111111222222 478888888887776543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.43 E-value=10 Score=31.84 Aligned_cols=14 Identities=0% Similarity=0.086 Sum_probs=5.6
Q ss_pred cCChHHHHHHHHHH
Q 044422 214 EWQVDMCLELYRMM 227 (519)
Q Consensus 214 ~~~~~~a~~~~~~m 227 (519)
.|+...|...|++.
T Consensus 107 kgdta~AV~aFdei 120 (221)
T COG4649 107 KGDTAAAVAAFDEI 120 (221)
T ss_pred cccHHHHHHHHHHH
Confidence 33344444444333
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.22 E-value=6.6 Score=36.30 Aligned_cols=101 Identities=12% Similarity=0.119 Sum_probs=72.5
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-Ch-----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 044422 265 MGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK-DI-----VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAI 338 (519)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 338 (519)
.|.+....+...++..-....+++.+...+-++... +. .+-.+.+.. +-.-++++++.++..=++.|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 344555556666666666677888888887777652 11 111222332 23346778999888888899999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKH 366 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 366 (519)
+++.+++.+.+.+++..|.++...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999988877743
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.70 E-value=0.77 Score=37.75 Aligned_cols=84 Identities=19% Similarity=0.170 Sum_probs=43.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 044422 207 IIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN 286 (519)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 286 (519)
++..+.+.+.++....+++.+...+..-+....+.++..|++.+..+...++++... + .-...+++.+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHhcch
Confidence 345555566666666666666655544456666667777777766666665554110 1 112334444455555
Q ss_pred HHHHHHHHHhc
Q 044422 287 VEEAVYVFNNM 297 (519)
Q Consensus 287 ~~~a~~~~~~~ 297 (519)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555554443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.65 E-value=5.9 Score=36.59 Aligned_cols=103 Identities=13% Similarity=0.097 Sum_probs=76.7
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC-CCh-----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 044422 163 RTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV-RNV-----VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND 236 (519)
Q Consensus 163 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 236 (519)
..|.+.+..+...++..-....+++.++..+-++.. |+. .+-.+.++.+ -.-++++++.++..=.+-|+-||.
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 446666777777788777778889999888877752 221 1122233333 234677999998888899999999
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHcC
Q 044422 237 FTFTSILSACTGSGALGQGRSAHCQTIRMG 266 (519)
Q Consensus 237 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 266 (519)
.+++.+|..+.+.+++.+|..+.-.|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999887776654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=86.47 E-value=37 Score=33.86 Aligned_cols=228 Identities=11% Similarity=0.061 Sum_probs=112.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 044422 208 IAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNV 287 (519)
Q Consensus 208 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 287 (519)
|.-.-+..+.+.-.+.-++..+ +.||-.+.- ++-+--......++++++++..+.|-. .+.+....
T Consensus 175 Mq~AWRERnp~aRIkaA~eALe--i~pdCAdAY-ILLAEEeA~Ti~Eae~l~rqAvkAgE~-----------~lg~s~~~ 240 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALE--INPDCADAY-ILLAEEEASTIVEAEELLRQAVKAGEA-----------SLGKSQFL 240 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHH-hhcccccccCHHHHHHHHHHHHHHHHH-----------hhchhhhh
Confidence 3333444555555555555544 345443221 222223345577888888877765410 00110001
Q ss_pred HHHHHHHHhcCCCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 044422 288 EEAVYVFNNMHGKD----IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVK-PDAITFLGVISSCRHGGLVEEGKVYFDS 362 (519)
Q Consensus 288 ~~a~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 362 (519)
...-..++....++ ..+-..+..++-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+
T Consensus 241 ~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 241 QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11111112222222 223344666677889999999999888765322 1234566788888888999988888888
Q ss_pred HHHcCCCcC-HHHHHHHHHHHHHcCCH---------------HHHHHHHHh-CCCCCCHHHHHHHHHhhhcCC------C
Q 044422 363 MAKHGLKPE-LDHYSCVVDLLGRAGLL---------------EEARDFIKQ-MPIYPNAVIWEAAESRLLLEP------E 419 (519)
Q Consensus 363 m~~~~~~p~-~~~~~~li~~~~~~g~~---------------~~A~~~~~~-~~~~p~~~~~~~~~~~~~~~~------~ 419 (519)
-.+...+.+ ...|+..+-.+...++- ..|.+.+.+ +..+|.+.-|-.-.|.+-+.| .
T Consensus 321 YdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrG 400 (539)
T PF04184_consen 321 YDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRG 400 (539)
T ss_pred hccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCC
Confidence 654332222 23455544332222221 112233333 244555554433222222222 2
Q ss_pred CchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 420 CAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 420 ~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
|..+-.--...+..-++.+.|+.++.---+
T Consensus 401 DSEAiaYAf~hL~hWk~veGAL~lL~~twe 430 (539)
T PF04184_consen 401 DSEAIAYAFFHLQHWKRVEGALNLLHCTWE 430 (539)
T ss_pred cHHHHHHHHHHHHHHhcCHhHHHHHHHHhc
Confidence 233332234445555778888888876544
|
The molecular function of this protein is uncertain. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.32 E-value=8.7 Score=28.72 Aligned_cols=63 Identities=11% Similarity=0.028 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLIT 178 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (519)
|.=++.+-++.+....+.|++....+.+++|.+.+|+..|..+++-.+... ..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 444455666666777788999999999999999999999999998765321 224445665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.28 E-value=0.57 Score=38.51 Aligned_cols=85 Identities=9% Similarity=0.062 Sum_probs=61.1
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHH
Q 044422 140 TAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDM 219 (519)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~ 219 (519)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 46777777888888888888888776566788889999999999888888888884433 333456666667777777
Q ss_pred HHHHHHHH
Q 044422 220 CLELYRMM 227 (519)
Q Consensus 220 a~~~~~~m 227 (519)
+.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77666654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.19 E-value=6.1 Score=29.83 Aligned_cols=63 Identities=10% Similarity=0.006 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLIT 178 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (519)
|.=+...-++.+....+.|++......+++|.+.+++..|..+++-++.. ..+....|..++.
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 44455666666777778899999999999999999999999999877543 2333336666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.83 E-value=1.1 Score=24.20 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=21.2
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHH
Q 044422 422 ATHVQLANLYAGVRCWDQAARVRKL 446 (519)
Q Consensus 422 ~~~~~L~~~~~~~g~~~~A~~~~~~ 446 (519)
.+...|..++...|++++|..++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3566789999999999999998863
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=85.29 E-value=16 Score=29.92 Aligned_cols=81 Identities=9% Similarity=0.139 Sum_probs=54.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCC---------CCChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044422 173 GSSLITLYSKCRVIIDAYKVFEEMP---------VRNVVSWTAIIAAFAQEWQ-VDMCLELYRMMRNSMLEPNDFTFTSI 242 (519)
Q Consensus 173 ~~~li~~~~~~g~~~~A~~~~~~m~---------~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~t~~~l 242 (519)
.|.++.-.+.-+++.....+++.+. ..+-.+|+.++.+..+..- ---+..+|+-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555555555555553 2456678888888866665 34567788888887888888889889
Q ss_pred HHHHHccCCch
Q 044422 243 LSACTGSGALG 253 (519)
Q Consensus 243 l~~~~~~g~~~ 253 (519)
|.++.+....+
T Consensus 122 i~~~l~g~~~~ 132 (145)
T PF13762_consen 122 IKAALRGYFHD 132 (145)
T ss_pred HHHHHcCCCCc
Confidence 98887764433
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.26 E-value=7.9 Score=28.93 Aligned_cols=62 Identities=10% Similarity=0.187 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-HcCCCcCHHHHHHHHH
Q 044422 317 LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA-KHGLKPELDHYSCVVD 380 (519)
Q Consensus 317 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~li~ 380 (519)
+..++.+-++.+....+.|+.......+++|.+.+++..|.++++-.+ +.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 455666777777777788888888888888888888888888888776 333 24445665543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.06 E-value=8.8 Score=29.03 Aligned_cols=61 Identities=10% Similarity=0.203 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-HcCCCcCHHHHHHHHH
Q 044422 318 AVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA-KHGLKPELDHYSCVVD 380 (519)
Q Consensus 318 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~li~ 380 (519)
..+..+-++.+....+.|+.......+.+|.+.+++..|.++|+-++ +.| +....|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 33566666666667778888888888888888888888888888877 333 22226666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.03 E-value=8.2 Score=33.43 Aligned_cols=74 Identities=16% Similarity=0.051 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhC---CCChHHHHHHHHHHHHhCCCHHHHH
Q 044422 116 VEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTG---FIANVYVGSSLITLYSKCRVIIDAY 190 (519)
Q Consensus 116 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~ 190 (519)
=+.|.+.|-.+...+.--++.....+...|. ..|.+++.+++...++.. -.+|+..+.+|.+.|.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3677888888877775556666655555554 567888888887776642 3567778888888888888887764
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.88 E-value=1.8 Score=24.82 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=24.2
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 422 ATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 422 ~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
..+..+...|...|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35677899999999999999999998764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion) | Back alignment and domain information |
|---|
Probab=84.67 E-value=16 Score=27.96 Aligned_cols=87 Identities=10% Similarity=-0.033 Sum_probs=56.3
Q ss_pred CChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044422 149 RNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMR 228 (519)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 228 (519)
...++|..|.+++...+- ....+--.-+..+.+.|++++|+..=.....||...|-+|-. .+.|-.+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 456788888888877663 334444445567788899999866656666788888876644 57888888888888886
Q ss_pred HCCCCCCHHHH
Q 044422 229 NSMLEPNDFTF 239 (519)
Q Consensus 229 ~~g~~p~~~t~ 239 (519)
.+| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 666 5555554
|
The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=84.58 E-value=22 Score=33.79 Aligned_cols=193 Identities=16% Similarity=0.101 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHc-cC------CCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC---CHHH
Q 044422 172 VGSSLITLYSKCRVIIDAYKVFE-EM------PVR--NVVSWTAIIAAFAQEWQVDMCLELYRMMRNS-MLEP---NDFT 238 (519)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~~~-~m------~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p---~~~t 238 (519)
++..+..+.++.|.+++++..-- .| .+. --.+|-.+.+++-+.-++.+++.+-+.-... |..| --..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 45555555666666655543211 11 111 1223444445555555555555544333221 1111 1122
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHcCCC-----CcHHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChh-HH
Q 044422 239 FTSILSACTGSGALGQGRSAHCQTIRMGFF-----SYIQVANSLISMYCKCGNVEEAVYVFNNMH-------GKDIV-SW 305 (519)
Q Consensus 239 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-------~~~~~-~~ 305 (519)
..++-.++...+.++.+.+.|+...+.... ....+|-.|.+.|.+..|+++|.-+..+.. -.|.. -|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 334556666677777777777666543211 124577777777877777777665444322 12322 12
Q ss_pred -----HHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 306 -----NSMIAGYAQHGLAVRAIDLFEEMMK----QRVKPD-AITFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 306 -----~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
-.|.-++-..|+...|.+.-++..+ .|-+|. ......+.+.|...|+.+.|+.-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2234456677777777777666543 332221 2233445566777788888777666543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.43 E-value=2 Score=24.78 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=24.6
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 422 ATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 422 ~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
.+|..++.+|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 36778899999999999999999998764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF14669 Asp_Glu_race_2: Putative aspartate racemase | Back alignment and domain information |
|---|
Probab=83.96 E-value=26 Score=30.00 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=31.2
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHcCC--------------CCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044422 241 SILSACTGSGALGQGRSAHCQTIRMGF--------------FSYIQVANSLISMYCKCGNVEEAVYVFN 295 (519)
Q Consensus 241 ~ll~~~~~~g~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~~~~~~~~~~a~~~~~ 295 (519)
+++..|-+.-++.++.++++.|.+..+ .+.-.+-|.....+.+.|.++.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 455566666677777777776655422 2233344555555555555555555555
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.81 E-value=20 Score=28.59 Aligned_cols=52 Identities=19% Similarity=0.140 Sum_probs=22.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 312 YAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
++..|+.+.|++.|.+...- .+-....||.-.+++.-.|+.++|+.=+++..
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444332 12233444444444444444444444444444
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.96 E-value=2.4 Score=25.66 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=23.6
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 422 ATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 422 ~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677899999999999999999998754
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=82.59 E-value=25 Score=28.68 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=25.6
Q ss_pred hcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 044422 283 KCGNVEEAVYVFNNMHGK------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 283 ~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 331 (519)
+.|++++|.+.|+.+... ...+.-.++.+|.+.|++++|...+++.++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 445555555555555431 1233344555555666666666666555554
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=81.56 E-value=57 Score=32.33 Aligned_cols=200 Identities=9% Similarity=-0.006 Sum_probs=103.5
Q ss_pred HHHHHHhHCCCCCCHHH--HHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHH--HHHHHHHHHHhCCCHHHHHHHHccC
Q 044422 121 SMHHDLHRERLKVDASF--LSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVY--VGSSLITLYSKCRVIIDAYKVFEEM 196 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m 196 (519)
++++.+.+.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...++.|+.+.+..+++.-
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~ 91 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLG 91 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcC
Confidence 44556666676665432 234555666777776 344555667655432 1234566777889998888888754
Q ss_pred CCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCCchHHHHHHHHHHHcCCCCc
Q 044422 197 PVR----NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFT--FTSILSACTGSGALGQGRSAHCQTIRMGFFSY 270 (519)
Q Consensus 197 ~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 270 (519)
... +....+. +...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+.+..+ .+.|..++
T Consensus 92 ~~~~~~~~~~g~tp-L~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L----l~~g~~~~ 162 (413)
T PHA02875 92 KFADDVFYKDGMTP-LHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL----IDHKACLD 162 (413)
T ss_pred CcccccccCCCCCH-HHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhcCCCCC
Confidence 321 1112222 33344556654 4444456666654321 12345555667776554444 44443332
Q ss_pred HH--HHHHHHHHHHhcCCHHHHHHHHHhcCCCChh---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 044422 271 IQ--VANSLISMYCKCGNVEEAVYVFNNMHGKDIV---SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDA 337 (519)
Q Consensus 271 ~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 337 (519)
.. .-.+.+...+..|+.+-+.-+++.-..++.. ...+.+...+..|+.+ +.+.+.+.|..++.
T Consensus 163 ~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 163 IEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 11 1122334455667777666666644433221 1224444445566654 44455556766654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=81.29 E-value=2.9 Score=24.39 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=15.7
Q ss_pred CChHHHHHHHHHHHHhCCCHHHHH
Q 044422 167 IANVYVGSSLITLYSKCRVIIDAY 190 (519)
Q Consensus 167 ~~~~~~~~~li~~~~~~g~~~~A~ 190 (519)
+-|..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 335566777777777777776664
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=80.55 E-value=30 Score=28.25 Aligned_cols=24 Identities=8% Similarity=0.167 Sum_probs=11.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 044422 206 AIIAAFAQEWQVDMCLELYRMMRN 229 (519)
Q Consensus 206 ~li~~~~~~~~~~~a~~~~~~m~~ 229 (519)
.++.+|.+.+++++|...+++..+
T Consensus 52 ~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 52 DLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344445555555555555554444
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=80.47 E-value=2.5 Score=23.94 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=24.1
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 423 THVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 423 ~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
++..++.+|.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456789999999999999999998775
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=80.10 E-value=66 Score=31.96 Aligned_cols=118 Identities=13% Similarity=0.033 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHhHC---CC-CCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHH
Q 044422 115 DVEKLISMHHDLHRE---RL-KVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAY 190 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~---g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 190 (519)
+.++...++...... |+ ..+......++..+ .|++..+..+++.+...+-..+.. ...
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~----------------~v~ 213 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLE----------------LLE 213 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHH----------------HHH
Confidence 567777777765432 44 55666666665543 688888888887765432111221 222
Q ss_pred HHHccC---CCCChhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044422 191 KVFEEM---PVRNVVSWTAIIAAFAQ---EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG 250 (519)
Q Consensus 191 ~~~~~m---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 250 (519)
.++... ...+...+..+++++.+ .++.+.|+..+..|.+.|..|....-..++.++-..|
T Consensus 214 ~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 214 EALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 222211 12223345556666655 4789999999999999998887655544444443333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 75.6 bits (184), Expect = 2e-14
Identities = 25/186 (13%), Positives = 63/186 (33%), Gaps = 8/186 (4%)
Query: 227 MRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN 286
R + P + +L G +L ++ Q + Q +
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 287 VEEAVYVFNNMHGK-------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAIT 339
+ A ++ HG+ + +N+++ G+A+ G + + + + PD ++
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 340 FLGVISSC-RHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398
+ + R + + M++ GLK + + ++ RA +L+
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
Query: 399 PIYPNA 404
+ P
Sbjct: 263 SLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.9 bits (99), Expect = 3e-04
Identities = 13/132 (9%), Positives = 40/132 (30%), Gaps = 8/132 (6%)
Query: 175 SLITLYSKCRVIIDAYKVFEEM-------PVRNVVSWTAIIAAFAQEWQVDMCLELYRMM 227
+ + A+ + + + + A++ +A++ + + M+
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 228 RNSMLEPNDFTFTSILSACTGSG-ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN 286
+++ L P+ ++ + L G Q + G L+S +
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 287 VEEAVYVFNNMH 298
++ V
Sbjct: 252 LKAVHKVKPTFS 263
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 1e-09
Identities = 64/498 (12%), Positives = 144/498 (28%), Gaps = 169/498 (33%)
Query: 3 IIFLQT-CRKKKPCSALQSLKTLSIIYR-SFCSQKLKQISSSKSLHKALRVLD-IISPR- 58
+ LQ + P +S + +I R +L+++ SK L VL + + +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 59 -------------TRDSTKTEVHLRLIQDFLQTDS-KHLDSQKFNHDFTGTNSTFGSSNV 104
TR + DFL + H+ + T ++
Sbjct: 259 WNAFNLSCKILLTTRFKQ--------VTDFLSAATTTHISLDHHSMTLTPDEVK----SL 306
Query: 105 FDQLLDTPVVDVEK--------LISM-----HHDLHR-ERLK-VDASFLSTAVTSC---- 145
+ LD D+ + +S+ L + K V+ L+T + S
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 146 --GSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVS 203
R + + L++ F + ++ + L++L
Sbjct: 367 EPAEYRKM-----FDRLSV---FPPSAHIPTILLSLI----------------------- 395
Query: 204 WTAIIAAFAQEWQVDMCLELYRMMRNSMLE--PNDFTFT------SILSACTGSGALGQG 255
W +I + V + + + S++E P + T + + AL
Sbjct: 396 WFDVI---KSDVMVVVNK----LHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL--- 445
Query: 256 RSAHCQTIRMGFFSYIQVANSLISMYC--KCGNVEEAVYVFNNMHGKDIVSWNSMIAGYA 313
H + Y ++ + Y ++ H I G+
Sbjct: 446 ---HRSIVD----HY-----NIPKTFDSDDLIPPYLDQYFYS--H---I--------GH- 479
Query: 314 QHGLAVRAIDLFEEM---------MKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA 364
H + + ++Q+++ D+ + S +++ K Y +
Sbjct: 480 -HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL---NTLQQLKFYKPYIC 535
Query: 365 KHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATH 424
+ P+ + V +L DF+ + E L+
Sbjct: 536 DN--DPKYERL--VNAIL----------DFLPK------------IEENLICSKYTDLLR 569
Query: 425 VQLANLYAGVRCWDQAAR 442
+ L + +++A +
Sbjct: 570 IALMAEDEAI--FEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 4e-09
Identities = 81/602 (13%), Positives = 172/602 (28%), Gaps = 173/602 (28%)
Query: 4 IFLQTCRKKKPCSALQ-SLKTLSIIYRSFCSQKLKQISSSKS-LHKALRVLDIISPRTRD 61
+F C +Q K++ +++ I SK + LR+ +
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSI------LSKEEIDHIIMSKDAVSGTLRLFWTL----LS 73
Query: 62 STKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLIS 121
+ V + +++ L+ + K L S T + ++ + D D +
Sbjct: 74 KQEEMVQ-KFVEEVLRINYKFLMS-PIK---TEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 122 MHHDLHRERLKVDASFLSTAVTSCGSTRNIR----GGAPYQCLAIRTGFIANVYVGSSLI 177
+ + R + + L A+ +N+ G+ +A+
Sbjct: 129 YN--VSRLQPYLK---LRQALLELRPAKNVLIDGVLGSGKTWVALDV------------- 170
Query: 178 TLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDF 237
C +YKV +M + W + + E ++M +L + + +D
Sbjct: 171 -----CL----SYKVQCKMD--FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 238 TFTSILSACTGSGALG------QGRSA------------------HCQTI---RMGFFSY 270
+ L + L + C+ + R +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR-----F 274
Query: 271 IQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVS-WNSMIAGYAQHGLAVRAIDLFEEMM 329
QV + L + +++ K ++ + L R DL E++
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-----------LDCRPQDLPREVL 323
Query: 330 KQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHY--SCVVDLLGRAGL 387
P + +I + +G +D+ KH +L S + L
Sbjct: 324 T--TNPRRL---SII-----AESIRDGLATWDNW-KHVNCDKLTTIIESSLNVLEP---- 368
Query: 388 LEEARDFIKQMPIYPN---------AVIWEAAE------------SRLLLE--------- 417
E R ++ ++P ++IW L+E
Sbjct: 369 -AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 418 ------------PECAATHVQLANLYAGVRCWDQAARVRKLMKDK------G--LKTNPG 457
A H + + Y + +D + D+ G LK
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI-PPYLDQYFYSHIGHHLKNIEH 486
Query: 458 CSWIEIMNVVY---RFRAEDK---SNTRLSEILPVLDFLVDQMKTLGYVPEVH---EEKV 508
+ + +V+ RF E K +T + +L+ L Y+ + E V
Sbjct: 487 PERMTLFRMVFLDFRF-LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
Query: 509 DD 510
+
Sbjct: 546 NA 547
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 519 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.85 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.79 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.73 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.71 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.69 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.69 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.68 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.68 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.62 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.62 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.61 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.57 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.55 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.54 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.51 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.51 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.49 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.47 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.47 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.45 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.45 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.45 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.44 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.42 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.42 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.41 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.41 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.41 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.41 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.4 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.39 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.39 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.39 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.35 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.35 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.34 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.34 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.33 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.32 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.32 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.28 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.24 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.23 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.22 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.21 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.2 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.2 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.19 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.18 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.14 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.13 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.12 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.06 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.05 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.02 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.0 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.99 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.99 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.93 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.9 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.89 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.89 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.86 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.85 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.82 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.77 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.74 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.73 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.72 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.7 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.67 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.66 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.65 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.63 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.63 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.6 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.59 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.58 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.58 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.57 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.57 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.55 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.55 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.54 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.52 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.51 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.5 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.49 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.47 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.47 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.47 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.42 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.41 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.4 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.39 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.39 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.39 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.37 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.36 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.35 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.32 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.31 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.31 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.31 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.3 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.29 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.27 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.26 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.26 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.25 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.22 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.2 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.19 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.18 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.18 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.17 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.15 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.14 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.1 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.09 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.07 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.06 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.06 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.06 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.03 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.03 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.02 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.01 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.01 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.98 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.97 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.96 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.96 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.91 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.88 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.88 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.88 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.87 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.86 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.85 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.85 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.84 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.84 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.83 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.83 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.78 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.77 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.74 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.73 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.73 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.72 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.7 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.67 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.65 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.63 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.63 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.61 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.57 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.57 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.55 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.51 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.49 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.45 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.43 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.4 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.37 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.37 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.33 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.25 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.18 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.17 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.12 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.11 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.09 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.09 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.03 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.95 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.88 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.83 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.77 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.62 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.6 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.59 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.41 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.39 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.34 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.19 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.12 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.75 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.74 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.6 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.51 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.24 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.23 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.15 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 94.96 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.78 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 94.75 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.7 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.01 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.32 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.9 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.74 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 92.47 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 92.0 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 91.87 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 90.79 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.68 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.63 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 89.72 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.3 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.34 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.34 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 86.73 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.19 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.58 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 84.91 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.4 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 84.2 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 83.47 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 83.47 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.26 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 83.0 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 82.53 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 81.79 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.57 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 81.07 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 80.71 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.28 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.98 E-value=9.6e-31 Score=272.10 Aligned_cols=404 Identities=11% Similarity=-0.028 Sum_probs=329.6
Q ss_pred hhccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCc-hhhhhhhhhcCCccC
Q 044422 37 KQISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFG-SSNVFDQLLDTPVVD 115 (519)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 115 (519)
+.+.+.|++++|..+|+.+... .|+...+..+...+...+ ....+...+......+.... ...+...+...+ +
T Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~ 165 (597)
T 2xpi_A 92 HDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTG-DYARAKCLLTKEDLYNRSSACRYLAAFCLVKLY--D 165 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTT-CHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTT--C
T ss_pred HHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcC-cHHHHHHHHHHHhccccchhHHHHHHHHHHHHh--h
Confidence 3344899999999999998632 234466677777777664 45566666666543222222 223334444443 9
Q ss_pred HHHHHHHHHHHhHC---------------CCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHH--------
Q 044422 116 VEKLISMHHDLHRE---------------RLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYV-------- 172 (519)
Q Consensus 116 ~~~A~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-------- 172 (519)
+++|+++|+++... |.+++..+|+.++.+|.+.|++++|..+|+.|.+.+. .+...
T Consensus 166 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~ 244 (597)
T 2xpi_A 166 WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNH 244 (597)
T ss_dssp HHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhh
Confidence 99999999954322 3345688999999999999999999999999988752 22333
Q ss_pred ------------------------------HHHHHHHHHhCCCHHHHHHHHccCCC--CChhHHHHHHHHHHhcCChHHH
Q 044422 173 ------------------------------GSSLITLYSKCRVIIDAYKVFEEMPV--RNVVSWTAIIAAFAQEWQVDMC 220 (519)
Q Consensus 173 ------------------------------~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a 220 (519)
|+.++..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 324 (597)
T 2xpi_A 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDV 324 (597)
T ss_dssp CSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHH
Confidence 33336667788999999999999986 8899999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 044422 221 LELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG- 299 (519)
Q Consensus 221 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 299 (519)
..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+
T Consensus 325 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 402 (597)
T 2xpi_A 325 LAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM 402 (597)
T ss_dssp HHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999998765 3467789999999999999999999999998764 66788999999999999999999999998753
Q ss_pred --CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHH
Q 044422 300 --KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSC 377 (519)
Q Consensus 300 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 377 (519)
.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.
T Consensus 403 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 480 (597)
T 2xpi_A 403 DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNE 480 (597)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 467899999999999999999999999998864 4478899999999999999999999999998754 447889999
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-------CCCCC--HHHH-----------------HHHHHhhhcCCCCchhHHHHHHHH
Q 044422 378 VVDLLGRAGLLEEARDFIKQM-------PIYPN--AVIW-----------------EAAESRLLLEPECAATHVQLANLY 431 (519)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~-----------------~~~~~~~~~~~~~~~~~~~L~~~~ 431 (519)
++..|.+.|++++|.++|+++ +..|+ ..+| ..++++++..|.++.+|..|+.+|
T Consensus 481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY 560 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 999999999999999999987 44677 5555 456777888999999999999999
Q ss_pred hccCCHHHHHHHHHHHHHCC
Q 044422 432 AGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 432 ~~~g~~~~A~~~~~~m~~~g 451 (519)
.+.|++++|.+.|+++.+..
T Consensus 561 ~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 561 LHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999998753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=257.77 Aligned_cols=212 Identities=11% Similarity=0.114 Sum_probs=168.6
Q ss_pred HHHHHHHHHHhHCCCCCCHH-HHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHcc
Q 044422 117 EKLISMHHDLHRERLKVDAS-FLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEE 195 (519)
Q Consensus 117 ~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 195 (519)
..+..+.+.+.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34556677787777665544 58889999999999999999999999999999999999999999988765332
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHH
Q 044422 196 MPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVAN 275 (519)
Q Consensus 196 m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (519)
.+.+.+++|.++|++|...|+.||..||++||.+|++.|++++|.+++++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 2345578899999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMH----GKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG 350 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 350 (519)
++|.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 88888888888888888888885 3688888888888888888888888888888888888888888888887754
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=253.68 Aligned_cols=184 Identities=13% Similarity=0.158 Sum_probs=176.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---------chHHHHHHHHHHHcCCCCcHH
Q 044422 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGA---------LGQGRSAHCQTIRMGFFSYIQ 272 (519)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~ 272 (519)
..++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46888999999999999999999999999999999999999999998765 578999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044422 273 VANSLISMYCKCGNVEEAVYVFNNMHG----KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCR 348 (519)
Q Consensus 273 ~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 348 (519)
+|+++|.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999974 7999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHc
Q 044422 349 HGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRA 385 (519)
Q Consensus 349 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 385 (519)
+.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999998763
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=254.93 Aligned_cols=383 Identities=9% Similarity=-0.031 Sum_probs=312.4
Q ss_pred cccccceeecccchhhhhhccCccchhhHHhhhhhcCCCC--------------CCCchHHHHHHHHHHHhhccccccch
Q 044422 20 SLKTLSIIYRSFCSQKLKQISSSKSLHKALRVLDIISPRT--------------RDSTKTEVHLRLIQDFLQTDSKHLDS 85 (519)
Q Consensus 20 ~~~~y~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~ll~~~~~~~~~~~~~ 85 (519)
+..+++.+...++ +.|++++|..+|+.+.+.. +.+.+...+..+...+...+ ....+
T Consensus 149 ~~~~~~~l~~~~~--------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A 219 (597)
T 2xpi_A 149 SSACRYLAAFCLV--------KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS-NFDRA 219 (597)
T ss_dssp CHHHHHHHHHHHH--------HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT-CHHHH
T ss_pred chhHHHHHHHHHH--------HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC-CHHHH
Confidence 3445666666777 8999999999999654333 33557788888888887774 45556
Q ss_pred hhhcccCCCCCCCCchhhhh------------------------------------h--hhhcCCccCHHHHHHHHHHHh
Q 044422 86 QKFNHDFTGTNSTFGSSNVF------------------------------------D--QLLDTPVVDVEKLISMHHDLH 127 (519)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~------------------------------------~--~~~~~~~~~~~~A~~~~~~m~ 127 (519)
...+..+....+........ . ...-...+++++|+++|+.+.
T Consensus 220 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 299 (597)
T 2xpi_A 220 KECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN 299 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhh
Confidence 66665555433332211100 0 001123347899999999988
Q ss_pred HCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHH
Q 044422 128 RERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSW 204 (519)
Q Consensus 128 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~ 204 (519)
+. +++..+++.++..+.+.|++++|..+|+.+.+.+ +.+..+++.++.+|.+.|++++|..+|+++. ..+..+|
T Consensus 300 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 376 (597)
T 2xpi_A 300 GL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW 376 (597)
T ss_dssp TG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred cC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHH
Confidence 65 5799999999999999999999999999998876 4477889999999999999999999999885 4578899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 044422 205 TAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC 284 (519)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (519)
+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.++.+.|++++|.++++.+.+.+ +.+..+|+.++.+|.+.
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 999999999999999999999998753 3467899999999999999999999999998875 56788999999999999
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHccCCHHH
Q 044422 285 GNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ----RVKPD--AITFLGVISSCRHGGLVEE 355 (519)
Q Consensus 285 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~t~~~ll~~~~~~g~~~~ 355 (519)
|++++|.++|+.+.+ .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++
T Consensus 455 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 999999999998764 47889999999999999999999999999876 66787 7899999999999999999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHh
Q 044422 356 GKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYA 432 (519)
Q Consensus 356 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 432 (519)
|..+++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++ ++++|.++.++..|..+|.
T Consensus 535 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------------l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 535 AIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHES---------------LAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH---------------HhcCCCChHHHHHHHHHHh
Confidence 999999998765 447889999999999999999999988754 5677888888888877764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-23 Score=203.75 Aligned_cols=352 Identities=12% Similarity=0.077 Sum_probs=296.8
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHH
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLI 120 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 120 (519)
..|++++|.+.+..+.... +.+...+..+-..+...+ ++++|.
T Consensus 11 ~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~-----------------------------------~~~~a~ 53 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCR-----------------------------------RLDRSA 53 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT-----------------------------------CHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC-----------------------------------CHHHHH
Confidence 6799999999998875322 222233333333333333 889999
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC--C
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP--V 198 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~ 198 (519)
..++...+.. +.+..+|..+...+.+.|++++|...|+.+.+.. +.+..+|..+..++.+.|++++|.+.|+++. .
T Consensus 54 ~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (388)
T 1w3b_A 54 HFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999888753 5588899999999999999999999999998864 4456689999999999999999999999886 3
Q ss_pred C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHH
Q 044422 199 R-NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSL 277 (519)
Q Consensus 199 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 277 (519)
| +...+..+...+...|++++|...|+++.+.. +-+..+|..+...+...|++++|...++.+.+.. +.+...+..+
T Consensus 132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 209 (388)
T 1w3b_A 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINL 209 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 4 45577888889999999999999999998764 3457889999999999999999999999999875 5567899999
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 044422 278 ISMYCKCGNVEEAVYVFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVE 354 (519)
Q Consensus 278 i~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 354 (519)
...+...|++++|...|++..+ | +..++..+...+.+.|++++|...|+++.+.. +.+..++..+...+.+.|+++
T Consensus 210 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 288 (388)
T 1w3b_A 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999987653 3 57889999999999999999999999999864 235678999999999999999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhcc
Q 044422 355 EGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGV 434 (519)
Q Consensus 355 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 434 (519)
+|...++++.+.. +.+..++..+...+.+.|++++|.+.++++ ++..|.+..++..++.+|.+.
T Consensus 289 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---------------l~~~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 289 EAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKA---------------LEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH---------------TTSCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HhcCCCcHHHHHHHHHHHHHc
Confidence 9999999999763 567889999999999999999999998865 345677777888899999999
Q ss_pred CCHHHHHHHHHHHHHC
Q 044422 435 RCWDQAARVRKLMKDK 450 (519)
Q Consensus 435 g~~~~A~~~~~~m~~~ 450 (519)
|++++|.+.|+++.+.
T Consensus 353 g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 353 GKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999999864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-21 Score=189.52 Aligned_cols=338 Identities=12% Similarity=0.100 Sum_probs=286.7
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHH
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLI 120 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 120 (519)
..|++++|...++.... ..+.....+..+-..+...+ ++++|+
T Consensus 45 ~~~~~~~a~~~~~~a~~--~~p~~~~~~~~lg~~~~~~g-----------------------------------~~~~A~ 87 (388)
T 1w3b_A 45 QCRRLDRSAHFSTLAIK--QNPLLAEAYSNLGNVYKERG-----------------------------------QLQEAI 87 (388)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHT-----------------------------------CHHHHH
T ss_pred HcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCC-----------------------------------CHHHHH
Confidence 67889999988877652 23445566777777776666 999999
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP--- 197 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--- 197 (519)
+.|+++.+.. +.+..+|..+..++.+.|++++|...+..+.+.. +.+...+..+...+...|++++|.+.|+++.
T Consensus 88 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 88 EHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999998753 3356689999999999999999999999998874 3355678888999999999999999999886
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHH
Q 044422 198 VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSL 277 (519)
Q Consensus 198 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 277 (519)
+.+..+|+.+...+.+.|++++|...|+++.+.+ +-+...+..+...+...|++++|...++...+.. +.+..++..+
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 243 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNL 243 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHH
Confidence 3457889999999999999999999999998864 3457788999999999999999999999998875 5568899999
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 044422 278 ISMYCKCGNVEEAVYVFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVE 354 (519)
Q Consensus 278 i~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 354 (519)
..+|.+.|++++|.+.|+++.+ | +..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|+++
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998764 3 56789999999999999999999999998863 557889999999999999999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhcc
Q 044422 355 EGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGV 434 (519)
Q Consensus 355 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 434 (519)
+|...++++.+.. +.+..++..+...|.+.|++++|.+.++++ ++++|.++.+|..+...+...
T Consensus 323 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---------------~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 323 EAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEA---------------IRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHH---------------HTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HhhCCCCHHHHHhHHHHHHHc
Confidence 9999999998753 446788999999999999999999988865 456677777888888877766
Q ss_pred CC
Q 044422 435 RC 436 (519)
Q Consensus 435 g~ 436 (519)
|+
T Consensus 387 ~~ 388 (388)
T 1w3b_A 387 QD 388 (388)
T ss_dssp CC
T ss_pred cC
Confidence 53
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-20 Score=186.17 Aligned_cols=312 Identities=11% Similarity=0.055 Sum_probs=244.9
Q ss_pred HHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC--
Q 044422 120 ISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP-- 197 (519)
Q Consensus 120 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 197 (519)
...|...... -+.+...+..+...+.+.|+++.|..+|+.+.+.. +.+..++..+..+|...|++++|...|+++.
T Consensus 12 ~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 12 DLGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccc-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3334444433 24467788888889999999999999999998764 5578889999999999999999999998876
Q ss_pred -CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHH------------HHHHHccCCchHHHHHHHH
Q 044422 198 -VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND---FTFTSI------------LSACTGSGALGQGRSAHCQ 261 (519)
Q Consensus 198 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~t~~~l------------l~~~~~~g~~~~a~~~~~~ 261 (519)
+.+..+|..+..+|.+.|++++|...|+++.+.. +.+. ..+..+ ...+...|++++|...++.
T Consensus 90 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3457788899999999999999999999998754 2233 455444 3448889999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H
Q 044422 262 TIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD-A 337 (519)
Q Consensus 262 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~ 337 (519)
+.+.. +.+..++..+..+|.+.|++++|...|+.+.+ .+..+|..+...|...|++++|...|+++.+. .|+ .
T Consensus 169 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 245 (450)
T 2y4t_A 169 ILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHK 245 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChH
Confidence 88765 56788899999999999999999999998764 46788999999999999999999999998864 333 3
Q ss_pred HHHHHH------------HHHHHccCCHHHHHHHHHHHHHcCCCcC-----HHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 044422 338 ITFLGV------------ISSCRHGGLVEEGKVYFDSMAKHGLKPE-----LDHYSCVVDLLGRAGLLEEARDFIKQMPI 400 (519)
Q Consensus 338 ~t~~~l------------l~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 400 (519)
..+..+ ...|.+.|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-- 321 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV-- 321 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--
Confidence 344443 67888999999999999999874 344 457788889999999999999888765
Q ss_pred CCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCC
Q 044422 401 YPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNP 456 (519)
Q Consensus 401 ~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 456 (519)
+...|.++.+|..++.+|...|++++|...+++..+. .|+.
T Consensus 322 -------------~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~ 362 (450)
T 2y4t_A 322 -------------LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NEND 362 (450)
T ss_dssp -------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSC
T ss_pred -------------HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--Ccch
Confidence 3556777788888999999999999999999998874 3444
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-19 Score=180.24 Aligned_cols=311 Identities=8% Similarity=-0.016 Sum_probs=257.6
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
++++|+.+|+.+.+.. +.+..++..+..++...|+++.|...++.+.+.+ +.+..++..+..+|.+.|++++|...|+
T Consensus 41 ~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 118 (450)
T 2y4t_A 41 QLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFK 118 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998753 4578899999999999999999999999999885 5567899999999999999999999999
Q ss_pred cCCC--C-Ch---hHHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHH
Q 044422 195 EMPV--R-NV---VSWTAI------------IAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGR 256 (519)
Q Consensus 195 ~m~~--~-~~---~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 256 (519)
++.. | +. ..+..+ ...+...|++++|...|+++.... +.+..++..+..++.+.|++++|.
T Consensus 119 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 197 (450)
T 2y4t_A 119 KVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAI 197 (450)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGH
T ss_pred HHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHH
Confidence 9864 3 23 555555 444899999999999999998764 457788999999999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHH------------HHHHHHcCChHHH
Q 044422 257 SAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--K-DIVSWNSM------------IAGYAQHGLAVRA 321 (519)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l------------i~~~~~~g~~~~A 321 (519)
..++.+.+.. +.+..++..+...|...|++++|...|+.+.+ | +...+..+ ...+.+.|++++|
T Consensus 198 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 276 (450)
T 2y4t_A 198 SDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 276 (450)
T ss_dssp HHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999998864 56789999999999999999999999998864 3 34445444 7889999999999
Q ss_pred HHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044422 322 IDLFEEMMKQRVKPD-----AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIK 396 (519)
Q Consensus 322 ~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (519)
...|+++.+. .|+ ...+..+...+.+.|++++|...++++.+.. +.+...|..+..+|...|++++|...++
T Consensus 277 ~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 277 TSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYE 353 (450)
T ss_dssp HHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999874 344 3478888999999999999999999998753 3468899999999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHhhhcCCCCchhHHHHH------------HHHhccC-----CHHHHHHHHHHH
Q 044422 397 QMPIYPNAVIWEAAESRLLLEPECAATHVQLA------------NLYAGVR-----CWDQAARVRKLM 447 (519)
Q Consensus 397 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~------------~~~~~~g-----~~~~A~~~~~~m 447 (519)
++ ++++|.++.++..|. ..|...| +.+++.+.++++
T Consensus 354 ~a---------------l~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 354 TA---------------QEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HH---------------HTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HH---------------HHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 66 344455555555555 3344445 566777777764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-19 Score=182.61 Aligned_cols=355 Identities=10% Similarity=-0.018 Sum_probs=269.3
Q ss_pred ccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHH
Q 044422 39 ISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEK 118 (519)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (519)
+...|++++|...|+.+.... |+...+..+...+...+ ++++
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g-----------------------------------~~~~ 57 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVG-----------------------------------DLKK 57 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHT-----------------------------------CHHH
T ss_pred HHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHh-----------------------------------hHHH
Confidence 336899999999999886433 35667777777776666 8899
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCC-------------------------------
Q 044422 119 LISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFI------------------------------- 167 (519)
Q Consensus 119 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------------------------------- 167 (519)
|+..|+.+.+.+ +.+...+..+..++...|++++|...|+.+.+.+-.
T Consensus 58 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 136 (514)
T 2gw1_A 58 VVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTA 136 (514)
T ss_dssp HHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888764 346678888888889999999999988888765410
Q ss_pred -----------------------------------------------ChHHHHHHHHHHHH---hCCCHHHHHHHHccCC
Q 044422 168 -----------------------------------------------ANVYVGSSLITLYS---KCRVIIDAYKVFEEMP 197 (519)
Q Consensus 168 -----------------------------------------------~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~ 197 (519)
.+...+..+...+. +.|++++|...|+++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 216 (514)
T 2gw1_A 137 TATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216 (514)
T ss_dssp --------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred HHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 01222333333333 3788888888887754
Q ss_pred C-----------------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHH
Q 044422 198 V-----------------RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHC 260 (519)
Q Consensus 198 ~-----------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 260 (519)
. .+..+|..+...+...|++++|...|+++.+.. |+...+..+..++...|++++|...++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 294 (514)
T 2gw1_A 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFD 294 (514)
T ss_dssp HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHH
T ss_pred HHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3 134567778888888888888888888887754 337778888888888888888888888
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 044422 261 QTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDA 337 (519)
Q Consensus 261 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 337 (519)
.+.+.. +.+..++..+...|...|++++|...|+...+ .+...+..+...+...|++++|...++++.+.. +.+.
T Consensus 295 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 372 (514)
T 2gw1_A 295 KALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAP 372 (514)
T ss_dssp HHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCS
T ss_pred HHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCH
Confidence 887764 45667888888888888888888888887643 356778888888888888888888888887653 2355
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CcC----HHHHHHHHHHHHH---cCCHHHHHHHHHhCCCCCCHHHHHH
Q 044422 338 ITFLGVISSCRHGGLVEEGKVYFDSMAKHGL-KPE----LDHYSCVVDLLGR---AGLLEEARDFIKQMPIYPNAVIWEA 409 (519)
Q Consensus 338 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~ 409 (519)
.++..+...+...|++++|...++++.+..- .++ ...+..+...+.. .|++++|...++.+
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a----------- 441 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA----------- 441 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH-----------
Confidence 6777888888888888888888888875321 111 3377788888888 88888888877754
Q ss_pred HHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 410 AESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 410 ~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
+...|.++.++..++.+|...|++++|...|++..+..
T Consensus 442 ----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 442 ----SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp ----HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 45677888888999999999999999999999998864
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-18 Score=174.41 Aligned_cols=315 Identities=9% Similarity=-0.051 Sum_probs=263.3
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
++++|+..|+++.+.+ |+...|..+..++.+.|+++.|...++.+.+.+ +.+..++..+..+|.+.|++++|...|+
T Consensus 21 ~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 97 (514)
T 2gw1_A 21 KYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLS 97 (514)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999865 799999999999999999999999999999875 5567899999999999999999999998
Q ss_pred cCCC--C-C-----------------------------------------------------------------------
Q 044422 195 EMPV--R-N----------------------------------------------------------------------- 200 (519)
Q Consensus 195 ~m~~--~-~----------------------------------------------------------------------- 200 (519)
++.. | +
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (514)
T 2gw1_A 98 VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTF 177 (514)
T ss_dssp HHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCC
T ss_pred HHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHH
Confidence 7631 1 1
Q ss_pred --------hhHHHHHHHHHHh---cCChHHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHccCCchHHH
Q 044422 201 --------VVSWTAIIAAFAQ---EWQVDMCLELYRMMRN-----SML--------EPNDFTFTSILSACTGSGALGQGR 256 (519)
Q Consensus 201 --------~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~g~--------~p~~~t~~~ll~~~~~~g~~~~a~ 256 (519)
...+......+.. .|++++|...|+++.+ ..- +.+..++..+...+...|++++|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 257 (514)
T 2gw1_A 178 ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAH 257 (514)
T ss_dssp SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence 2223333333443 7999999999999987 311 223567888899999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 044422 257 SAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRV 333 (519)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 333 (519)
..++.+.+... +..++..+...|...|++++|...++.+.+ .+..+|..+...+...|++++|...+++..+...
T Consensus 258 ~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 335 (514)
T 2gw1_A 258 EDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335 (514)
T ss_dssp HHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS
T ss_pred HHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh
Confidence 99999988753 388899999999999999999999998764 3667899999999999999999999999988643
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 044422 334 KPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESR 413 (519)
Q Consensus 334 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~ 413 (519)
. +..++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...++++
T Consensus 336 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a--------------- 398 (514)
T 2gw1_A 336 E-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA--------------- 398 (514)
T ss_dssp S-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH---------------
T ss_pred h-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------
Confidence 3 56788889999999999999999999998753 346678889999999999999999988865
Q ss_pred hhcCCCCch------hHHHHHHHHhc---cCCHHHHHHHHHHHHHCC
Q 044422 414 LLLEPECAA------THVQLANLYAG---VRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 414 ~~~~~~~~~------~~~~L~~~~~~---~g~~~~A~~~~~~m~~~g 451 (519)
+...|.++. ++..++.+|.. .|++++|...+++..+..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 233444433 88889999999 999999999999998753
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.4e-17 Score=157.90 Aligned_cols=298 Identities=10% Similarity=0.032 Sum_probs=241.8
Q ss_pred CHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHH
Q 044422 134 DASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAA 210 (519)
Q Consensus 134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~ 210 (519)
|...+..+...+...|+++.|...|+.+.+.. +.+..++..+..++...|++++|...|++.. +.+...|..+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 45567778888889999999999999998864 4567788889999999999999999998875 3466788899999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHH
Q 044422 211 FAQEWQVDMCLELYRMMRNSMLE--PNDFTFTSI------------LSACTGSGALGQGRSAHCQTIRMGFFSYIQVANS 276 (519)
Q Consensus 211 ~~~~~~~~~a~~~~~~m~~~g~~--p~~~t~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 276 (519)
+...|++++|...|++..+.... .+...+..+ ...+...|++++|...++.+.+.. +.+..++..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 99999999999999998875310 233444444 578889999999999999998875 567888999
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH------------
Q 044422 277 LISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFL------------ 341 (519)
Q Consensus 277 li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~------------ 341 (519)
+...+...|++++|...++.+.+ .+..++..+...+...|++++|...+++..+... .+...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHH
Confidence 99999999999999999998764 3678899999999999999999999999887532 2333332
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCcC-H----HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhc
Q 044422 342 GVISSCRHGGLVEEGKVYFDSMAKHGLKPE-L----DHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLL 416 (519)
Q Consensus 342 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~ 416 (519)
.+...+.+.|++++|...++++.+.. |+ . ..+..+...+...|++++|.+.+++. ++.
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~---------------~~~ 301 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEV---------------LQM 301 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHH---------------HHh
Confidence 22556889999999999999998743 33 2 23556788999999999999988755 455
Q ss_pred CCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 417 EPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 417 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
.|.++.++..++.+|...|++++|...|++..+..
T Consensus 302 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 78888899999999999999999999999998753
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-17 Score=167.01 Aligned_cols=354 Identities=11% Similarity=0.067 Sum_probs=220.8
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHH
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLI 120 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 120 (519)
..|++++|...|+...... +.+...+..+-..+...+ ++++|+
T Consensus 37 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g-----------------------------------~~~~A~ 79 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTG-----------------------------------DLEKVI 79 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHT-----------------------------------CHHHHH
T ss_pred HhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcC-----------------------------------CHHHHH
Confidence 6677777777777764322 223445555555554544 788888
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCC----------------------------------
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGF---------------------------------- 166 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---------------------------------- 166 (519)
+.|+++.+.+ +.+...+..+..++...|+++.|...|+.+....-
T Consensus 80 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 158 (537)
T 3fp2_A 80 EFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGS 158 (537)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 8888887754 33667777778888888888888887753311100
Q ss_pred --CChHH------------------------------HHHHHHHHHHhC--------CCHHHHHHHHccCCC--CC----
Q 044422 167 --IANVY------------------------------VGSSLITLYSKC--------RVIIDAYKVFEEMPV--RN---- 200 (519)
Q Consensus 167 --~~~~~------------------------------~~~~li~~~~~~--------g~~~~A~~~~~~m~~--~~---- 200 (519)
.|+.. ....+...+... |++++|..+|+++.+ |+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~ 238 (537)
T 3fp2_A 159 QVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238 (537)
T ss_dssp CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHH
T ss_pred cccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchh
Confidence 00000 111111111111 356666666666543 22
Q ss_pred ----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHH
Q 044422 201 ----VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANS 276 (519)
Q Consensus 201 ----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 276 (519)
..+|..+...+...|++++|...|++.... .|+...+..+...+...|++++|...++.+.+.. +.+..++..
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 315 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYH 315 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHH
Confidence 123555556666677777777777776664 3445666666677777777777777777766654 445666777
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 044422 277 LISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLV 353 (519)
Q Consensus 277 li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 353 (519)
+...|...|++++|...|++..+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 316 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 394 (537)
T 3fp2_A 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDF 394 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCH
Confidence 77777777777777777766542 245566667777777777777777777766543 22445666666667777777
Q ss_pred HHHHHHHHHHHHcC-----CCcCHHHHHHHHHHHHHc----------CCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCC
Q 044422 354 EEGKVYFDSMAKHG-----LKPELDHYSCVVDLLGRA----------GLLEEARDFIKQMPIYPNAVIWEAAESRLLLEP 418 (519)
Q Consensus 354 ~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~ 418 (519)
++|...++++.+.. .......+......+.+. |++++|...+++ +++.+|
T Consensus 395 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~---------------a~~~~p 459 (537)
T 3fp2_A 395 DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK---------------ACELDP 459 (537)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHH---------------HHHHCT
T ss_pred HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHH---------------HHHhCC
Confidence 77777777665421 111122233344555555 677777666654 456788
Q ss_pred CCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 419 ECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 419 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
.++.++..++.+|...|++++|.+.|++..+..
T Consensus 460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 888899999999999999999999999998865
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.5e-17 Score=154.64 Aligned_cols=288 Identities=11% Similarity=0.000 Sum_probs=239.3
Q ss_pred CCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHH
Q 044422 131 LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAI 207 (519)
Q Consensus 131 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~l 207 (519)
.+.+...+..+...+...|+++.|..+++.+.+.. +.+...+..++.++...|++++|..+++++. +.+...|..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 34566778888888889999999999999998875 4456677778889999999999999999876 3567789999
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 044422 208 IAAFAQEW-QVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN 286 (519)
Q Consensus 208 i~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 286 (519)
...+...| ++++|...|++..... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999998764 3456788899999999999999999999998875 4456777779999999999
Q ss_pred HHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHccCCHHH
Q 044422 287 VEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR--------VKPDAITFLGVISSCRHGGLVEE 355 (519)
Q Consensus 287 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~t~~~ll~~~~~~g~~~~ 355 (519)
+++|...++...+ .+...+..+...+...|++++|...+++..+.. .+.+..++..+...+...|++++
T Consensus 175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999998765 366789999999999999999999999987631 13345788899999999999999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHH-hcc
Q 044422 356 GKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLY-AGV 434 (519)
Q Consensus 356 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~ 434 (519)
|...+++..+.. +.+...+..+...|.+.|++++|.+.+++. ++++|.++.++..+..++ ...
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---------------l~~~p~~~~~~~~l~~~~~~~~ 318 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTA---------------LGLRRDDTFSVTMLGHCIEMYI 318 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT---------------TTTCSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHH---------------HccCCCchHHHHHHHHHHHHHh
Confidence 999999998754 346788899999999999999999999876 345566666777778777 455
Q ss_pred CCH
Q 044422 435 RCW 437 (519)
Q Consensus 435 g~~ 437 (519)
|+.
T Consensus 319 g~~ 321 (330)
T 3hym_B 319 GDS 321 (330)
T ss_dssp TC-
T ss_pred Cch
Confidence 554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.1e-16 Score=150.28 Aligned_cols=278 Identities=8% Similarity=-0.032 Sum_probs=233.5
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
++++|+..|+.+.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+..++...|++++|...|+
T Consensus 18 ~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 95 (359)
T 3ieg_A 18 QLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFK 95 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHH
Confidence 9999999999998864 3468889999999999999999999999999874 4467889999999999999999999999
Q ss_pred cCCC--C----ChhHHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHH
Q 044422 195 EMPV--R----NVVSWTAI------------IAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGR 256 (519)
Q Consensus 195 ~m~~--~----~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 256 (519)
+... | +...+..+ ...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~ 174 (359)
T 3ieg_A 96 KVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAI 174 (359)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 8864 3 33444444 578999999999999999998764 456788999999999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHH------------HHHHHHHHcCChHHH
Q 044422 257 SAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--K-DIVSWN------------SMIAGYAQHGLAVRA 321 (519)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~------------~li~~~~~~g~~~~A 321 (519)
..++.+.+.. +.+..++..+...|...|++++|...|+...+ | +...+. .+...+.+.|++++|
T Consensus 175 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 253 (359)
T 3ieg_A 175 SDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 253 (359)
T ss_dssp HHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999998875 66788999999999999999999999998764 3 333332 236678999999999
Q ss_pred HHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 044422 322 IDLFEEMMKQRVKPDA----ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQ 397 (519)
Q Consensus 322 ~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (519)
...++++.+.... +. ..+..+..++...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++
T Consensus 254 ~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 254 TSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEA 331 (359)
T ss_dssp HHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999875422 22 234557788999999999999999999853 34788899999999999999999999886
Q ss_pred C
Q 044422 398 M 398 (519)
Q Consensus 398 ~ 398 (519)
.
T Consensus 332 a 332 (359)
T 3ieg_A 332 A 332 (359)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-16 Score=150.09 Aligned_cols=267 Identities=11% Similarity=0.021 Sum_probs=228.5
Q ss_pred CCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044422 166 FIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSI 242 (519)
Q Consensus 166 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 242 (519)
.+.+...+..+...+...|++++|.++|+++. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 35566778888999999999999999999986 3456678888899999999999999999998864 3456788899
Q ss_pred HHHHHccC-CchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCh
Q 044422 243 LSACTGSG-ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLA 318 (519)
Q Consensus 243 l~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 318 (519)
...+...| ++++|...++.+.+.. +.+...+..+...+...|++++|...|+...+ .+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 99999999 9999999999998875 55678899999999999999999999998764 3467788899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--------CCcCHHHHHHHHHHHHHcCCHHH
Q 044422 319 VRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHG--------LKPELDHYSCVVDLLGRAGLLEE 390 (519)
Q Consensus 319 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~ 390 (519)
++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. .+.....+..+...|...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998764 3467888999999999999999999999988631 13346788999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 391 ARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 391 A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
|...+++. ++..|.++.++..+..+|...|++++|.+.+++..+.
T Consensus 255 A~~~~~~a---------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQA---------------LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHH---------------HHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHH---------------HhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 99988754 4567888899999999999999999999999987653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-16 Score=155.49 Aligned_cols=290 Identities=10% Similarity=-0.042 Sum_probs=202.1
Q ss_pred CCChhhHHH-HHHHHHHhCC-CC--hHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHH
Q 044422 148 TRNIRGGAP-YQCLAIRTGF-IA--NVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMC 220 (519)
Q Consensus 148 ~~~~~~a~~-~~~~~~~~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a 220 (519)
.|+++.|.. .+....+..- .| +...+..+...+.+.|++++|...|+++. +.+..+|..+..++...|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 456666666 5554432210 11 23456667777777788888877777764 34556777777778888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHH---------------HHHHHHhcC
Q 044422 221 LELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANS---------------LISMYCKCG 285 (519)
Q Consensus 221 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------------li~~~~~~~ 285 (519)
...|+++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+...+.. .+..+...|
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 88887776654 3456677777777888888888888887777654 212222211 233334889
Q ss_pred CHHHHHHHHHhcCC--C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 044422 286 NVEEAVYVFNNMHG--K---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYF 360 (519)
Q Consensus 286 ~~~~a~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 360 (519)
++++|...|+++.+ | +..++..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|...+
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998763 3 46788999999999999999999999988753 335778999999999999999999999
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHH
Q 044422 361 DSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP-IYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQ 439 (519)
Q Consensus 361 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~ 439 (519)
+++.+.. +.+...+..+...|.+.|++++|...++++- ..|+.... .-...|....+|..|..+|...|++++
T Consensus 275 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 275 RRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP-----RGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc-----cccccchhhHHHHHHHHHHHHhCChHh
Confidence 9998753 3467889999999999999999999988661 11110000 001122336788889999999999999
Q ss_pred HHHHHHH
Q 044422 440 AARVRKL 446 (519)
Q Consensus 440 A~~~~~~ 446 (519)
|..++++
T Consensus 349 A~~~~~~ 355 (368)
T 1fch_A 349 YGAADAR 355 (368)
T ss_dssp HHHHHTT
T ss_pred HHHhHHH
Confidence 9998764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-16 Score=152.10 Aligned_cols=281 Identities=14% Similarity=0.039 Sum_probs=223.9
Q ss_pred CHHHHHH-HHHHHhHCC---CCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHH
Q 044422 115 DVEKLIS-MHHDLHRER---LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAY 190 (519)
Q Consensus 115 ~~~~A~~-~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 190 (519)
++++|++ .|++..+.. ...+...+..+...+.+.|+++.|...++.+.+.. +.+..++..+..++.+.|++++|.
T Consensus 40 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp ------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHH
Confidence 6777777 777655432 11135567788889999999999999999999874 557788999999999999999999
Q ss_pred HHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHccCCc
Q 044422 191 KVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTS---------------ILSACTGSGAL 252 (519)
Q Consensus 191 ~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~---------------ll~~~~~~g~~ 252 (519)
..|+++. +.+..++..+..++...|++++|...|+++...... +...+.. .+..+...|++
T Consensus 119 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (368)
T 1fch_A 119 SALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF 197 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccH
Confidence 9999875 457789999999999999999999999999886422 2222211 24444488999
Q ss_pred hHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 044422 253 GQGRSAHCQTIRMGFFS-YIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEM 328 (519)
Q Consensus 253 ~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 328 (519)
++|...++.+.+..... +..++..+...|.+.|++++|...|+++.+ .+..+|..+...+...|++++|...|+++
T Consensus 198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 277 (368)
T 1fch_A 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277 (368)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998875221 588999999999999999999999998753 36789999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC----------cCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 329 MKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK----------PELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 329 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
.+.. +.+..++..+..++.+.|++++|...++++.+..-. ....+|..+..+|...|+.++|..++++.
T Consensus 278 l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 278 LELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 8753 346778999999999999999999999998863211 12678999999999999999999988743
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.3e-15 Score=137.35 Aligned_cols=251 Identities=12% Similarity=0.035 Sum_probs=198.9
Q ss_pred HHHHHhCCCHHHHHHHHccCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCc
Q 044422 177 ITLYSKCRVIIDAYKVFEEMPVRNV----VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGAL 252 (519)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 252 (519)
|+-....|+++.|+..++.....++ .....+..+|...|+++.|+..++. .-+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 3445568899999998887764332 3445677889999999998876644 2356777888888899999999
Q ss_pred hHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 044422 253 GQGRSAHCQTIRMGF-FSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 253 ~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 331 (519)
++|.+.++.+...+. +.+...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++++.+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 999999999887764 44566777788899999999999999998 457788899999999999999999999999876
Q ss_pred CCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHH
Q 044422 332 RVKPDAITF---LGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWE 408 (519)
Q Consensus 332 ~~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 408 (519)
. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++.
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a---------- 226 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA---------- 226 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH----------
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH----------
Confidence 3 554321 12233344568999999999999876 3567888999999999999999999887754
Q ss_pred HHHHhhhcCCCCchhHHHHHHHHhccCCHHH-HHHHHHHHHHCC
Q 044422 409 AAESRLLLEPECAATHVQLANLYAGVRCWDQ-AARVRKLMKDKG 451 (519)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~-A~~~~~~m~~~g 451 (519)
+.++|.++.++..++..+...|+.++ +.++++++.+..
T Consensus 227 -----l~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 227 -----LDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp -----HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred -----HHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 67788899999999999999999876 568888887754
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=172.73 Aligned_cols=128 Identities=13% Similarity=0.152 Sum_probs=108.3
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 044422 267 FFSYIQVANSLISMYCKCGNVEEAVYVFNNMH-------GKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAIT 339 (519)
Q Consensus 267 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 339 (519)
...-..+||+||++||+.|++++|.++|++|. .||++|||+||.+||+.|++++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456688888888888888888888887653 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCC-HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 044422 340 FLGVISSCRHGGL-VEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDF 394 (519)
Q Consensus 340 ~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 394 (519)
|++||.++++.|+ .+.|.++|++|.+.|+.||..+|++++.++.+.+-++.+.++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999999987 578899999999999999999999998877765444433333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.7e-18 Score=173.87 Aligned_cols=127 Identities=10% Similarity=0.035 Sum_probs=111.9
Q ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHccCC-------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 044422 167 IANVYVGSSLITLYSKCRVIIDAYKVFEEMP-------VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTF 239 (519)
Q Consensus 167 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 239 (519)
..-..+||+||++||+.|++++|.++|++|. .||+.+||+||++|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445689999999999999999999997753 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCc-hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 044422 240 TSILSACTGSGAL-GQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYV 293 (519)
Q Consensus 240 ~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 293 (519)
++||.++|+.|+. ++|.+++++|.+.|+.||..+|++++..+.+.+-++.+.++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999999985 78999999999999999999999999877765433333333
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=6e-16 Score=148.43 Aligned_cols=332 Identities=13% Similarity=0.048 Sum_probs=160.8
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHH
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLI 120 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 120 (519)
+.|++++|.++++.+.. ..+|..+..++...+ ++++|+
T Consensus 15 ~~~~ld~A~~fae~~~~-------~~vWs~La~A~l~~g-----------------------------------~~~eAI 52 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE-------PAVWSQLAKAQLQKG-----------------------------------MVKEAI 52 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC-------hHHHHHHHHHHHHcC-----------------------------------CHHHHH
Confidence 56778888888888842 247777777776665 889999
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCC
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRN 200 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 200 (519)
+.|.+. +|..+|..++.++...|++++|..+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+
T Consensus 53 dsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn 121 (449)
T 1b89_A 53 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPN 121 (449)
T ss_dssp ----------------------------------------------------------------CHHHHTTTTT---CC-
T ss_pred HHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCc
Confidence 999653 58889999999999999999999988766653 5567889999999999999999998886 477
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 044422 201 VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISM 280 (519)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 280 (519)
..+|+.+...|...|++++|...|..+ ..|..+..++.+.|++++|.+.+..+ .++.+|..++.+
T Consensus 122 ~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~a 186 (449)
T 1b89_A 122 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 186 (449)
T ss_dssp ---------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHH
Confidence 889999999999999999999999977 37899999999999999999999887 378999999999
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 044422 281 YCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYF 360 (519)
Q Consensus 281 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 360 (519)
|+..|+++.|......+. ..+.-...++..|.+.|++++|..+++...... +-....|+-|-..+++- ++++..+-+
T Consensus 187 Cv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl 263 (449)
T 1b89_A 187 CVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHL 263 (449)
T ss_dssp HHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 999999999988777655 344445578999999999999999999987554 34466777776666664 344444444
Q ss_pred HHHH-HcCCCc------CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC--------------CHHHHHHHHHhhhcCC
Q 044422 361 DSMA-KHGLKP------ELDHYSCVVDLLGRAGLLEEARDFIKQMP-IYP--------------NAVIWEAAESRLLLEP 418 (519)
Q Consensus 361 ~~m~-~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p--------------~~~~~~~~~~~~~~~~ 418 (519)
+... +-+++| +...|..++..|...++++.|...+-+-+ .-- -..-|+++.-.+...
T Consensus 264 ~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~- 342 (449)
T 1b89_A 264 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK- 342 (449)
T ss_dssp HHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcC-
Confidence 3322 233444 45678899999999999999988765542 111 122233333333333
Q ss_pred CCchhHHHHHHHHhccCCHHHHHHHHHH
Q 044422 419 ECAATHVQLANLYAGVRCWDQAARVRKL 446 (519)
Q Consensus 419 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 446 (519)
|...+.|+.++...=+...+.++|++
T Consensus 343 --p~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 343 --PLLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp --GGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 33566677777666666666666543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-15 Score=152.25 Aligned_cols=316 Identities=10% Similarity=0.009 Sum_probs=223.8
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
++++|+..|+++.+.. +.+...+..+..++.+.|+++.|...++.+.+.. +.+..++..+..++...|++++|...|+
T Consensus 40 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 40 NFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp CCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6777777777777653 3366677777777777777777777777777664 4456677777777777777777777775
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCHHHH-----------------------------
Q 044422 195 EMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNS------MLEPNDFTF----------------------------- 239 (519)
Q Consensus 195 ~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~t~----------------------------- 239 (519)
.+. .++...+..+..+...+....|...++++... ...|+....
T Consensus 118 ~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (537)
T 3fp2_A 118 VLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALL 196 (537)
T ss_dssp HHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHH
T ss_pred HHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHH
Confidence 332 22222223344444455556666666666432 112222221
Q ss_pred -HHHHHHHHc--------cCCchHHHHHHHHHHHcCCCCc-------HHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC
Q 044422 240 -TSILSACTG--------SGALGQGRSAHCQTIRMGFFSY-------IQVANSLISMYCKCGNVEEAVYVFNNMHG--KD 301 (519)
Q Consensus 240 -~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~ 301 (519)
..+...+.. .|++++|..+++.+.+.. +.+ ..++..+...+...|++++|...|+...+ |+
T Consensus 197 ~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~ 275 (537)
T 3fp2_A 197 SDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT 275 (537)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC
Confidence 111111111 247788888888887754 222 33577777888999999999999998763 66
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 044422 302 IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDL 381 (519)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 381 (519)
...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 353 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACL 353 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 7788888899999999999999999988764 3367788889999999999999999999998754 3356788889999
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 382 LGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 382 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
|...|++++|...++++ ++..|.++.++..++..|...|++++|...++++.+..
T Consensus 354 ~~~~g~~~~A~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 354 LYKQGKFTESEAFFNET---------------KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHTTCHHHHHHHHHHH---------------HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH---------------HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 99999999999988754 46678888899999999999999999999999987754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.2e-16 Score=149.93 Aligned_cols=260 Identities=11% Similarity=-0.009 Sum_probs=213.4
Q ss_pred CHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHH
Q 044422 134 DASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAA 210 (519)
Q Consensus 134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~ 210 (519)
+...+..+...+.+.|+++.|...|+.+++.. +.+..++..+..+|.+.|++++|+..|++.. +.+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44558888889999999999999999999875 5578899999999999999999999999876 3567899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCC--cHHHHHHH
Q 044422 211 FAQEWQVDMCLELYRMMRNSMLEPN-----------DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFS--YIQVANSL 277 (519)
Q Consensus 211 ~~~~~~~~~a~~~~~~m~~~g~~p~-----------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l 277 (519)
|...|++++|...|+++.+.. |+ ...+..+...+...|++++|...++.+.+.. +. +..++..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l 219 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGL 219 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHH
Confidence 999999999999999997743 32 2233455788999999999999999998875 33 68899999
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 044422 278 ISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVE 354 (519)
Q Consensus 278 i~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 354 (519)
...|.+.|++++|...|++..+ .+..+|+.+..+|...|++++|...|+++.+.. +.+..++..+..+|...|+++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999998753 467899999999999999999999999998863 335788999999999999999
Q ss_pred HHHHHHHHHHHcC---CC--------cCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 355 EGKVYFDSMAKHG---LK--------PELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 355 ~a~~~~~~m~~~~---~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+|...|+++.+.. .. .+...|..+..++...|+.+.+....++-
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 9999999988522 01 13678999999999999999999887753
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=148.28 Aligned_cols=270 Identities=10% Similarity=-0.063 Sum_probs=211.0
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044422 169 NVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSA 245 (519)
Q Consensus 169 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 245 (519)
+...+..+...+.+.|++++|...|+++. +.+..+|..+..++...|++++|...|+++.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34558888999999999999999999886 4577899999999999999999999999998864 4467899999999
Q ss_pred HHccCCchHHHHHHHHHHHcCCCCc----------HHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C---ChhHHHHHHH
Q 044422 246 CTGSGALGQGRSAHCQTIRMGFFSY----------IQVANSLISMYCKCGNVEEAVYVFNNMHG--K---DIVSWNSMIA 310 (519)
Q Consensus 246 ~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~li~ 310 (519)
+...|++++|...++.+.+.. +.+ ..++..+...+.+.|++++|...|+++.+ | +..++..+..
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999998753 111 23344568899999999999999998864 3 5789999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHH
Q 044422 311 GYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEE 390 (519)
Q Consensus 311 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 390 (519)
.+...|++++|...|+++.+.. +.+..++..+..+|...|++++|...++++.+.. +.+...+..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998863 3467899999999999999999999999999753 3357889999999999999999
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHH
Q 044422 391 ARDFIKQM-PIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKL 446 (519)
Q Consensus 391 A~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 446 (519)
|...++++ ...|+...... ......+...|..|..++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQ----VPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcc----cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999876 11111100000 000011356788899999999999998887664
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=152.67 Aligned_cols=284 Identities=12% Similarity=0.064 Sum_probs=134.5
Q ss_pred cCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 044422 114 VDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVF 193 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 193 (519)
++.++|.+.++++. ++.+|..+..++.+.|++++|.+.|.. .+|..+|..++..+...|++++|++++
T Consensus 17 ~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 17 GNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 37899999999883 345899999999999999999999954 357779999999999999999999987
Q ss_pred ccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcH
Q 044422 194 EEMPV--RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYI 271 (519)
Q Consensus 194 ~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 271 (519)
+...+ +++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 85 ~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 85 QMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 148 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------
T ss_pred HHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence 76653 556789999999999999999998884 377789999999999999999999999876
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044422 272 QVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGG 351 (519)
Q Consensus 272 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 351 (519)
..|..+++++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+ .....-...++..|.+.|
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G 221 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRG 221 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCC
Confidence 478999999999999999999999983 8899999999999999999996654442 223333556888999999
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHc--CCHHHHHHHHHh-CCCCCCHHHHHHHHHhhhcCCCCchhHHHHH
Q 044422 352 LVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRA--GLLEEARDFIKQ-MPIYPNAVIWEAAESRLLLEPECAATHVQLA 428 (519)
Q Consensus 352 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~ 428 (519)
.+++|..+++...... +-...+|+-|.-+|++- ++..+..+.|.. +.+.|-. ++. .+...|..+.
T Consensus 222 ~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~---~~~--------~~~~~w~e~~ 289 (449)
T 1b89_A 222 YFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL---RAA--------EQAHLWAELV 289 (449)
T ss_dssp CHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHH---HHH--------HTTTCHHHHH
T ss_pred CHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHH---HHH--------HHHHHHHHHH
Confidence 9999999999988644 45677788887777764 345555555442 2211100 000 3456778889
Q ss_pred HHHhccCCHHHHHHHH
Q 044422 429 NLYAGVRCWDQAARVR 444 (519)
Q Consensus 429 ~~~~~~g~~~~A~~~~ 444 (519)
-.|...++++.|..++
T Consensus 290 ~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 290 FLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHhhchHHHHHHHH
Confidence 9999999999998753
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-15 Score=141.46 Aligned_cols=261 Identities=11% Similarity=-0.027 Sum_probs=209.5
Q ss_pred CHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHH
Q 044422 134 DASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAA 210 (519)
Q Consensus 134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~ 210 (519)
+...+......+...|++++|..+++.+.+.. +.+..++..+..++.+.|++++|...|+++. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 33455667777888899999999998888764 4467788888888999999999999888775 3467788888889
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHccCCchHHHHHHHHHHHcCCCCcHHHHH
Q 044422 211 FAQEWQVDMCLELYRMMRNSMLEPNDFTFTSI--------------LS-ACTGSGALGQGRSAHCQTIRMGFFSYIQVAN 275 (519)
Q Consensus 211 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (519)
+...|++++|...++++..... .+...+..+ .. .+...|++++|...++.+.+.. +.+..++.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 9999999999999988877532 122222222 22 3777889999999999998875 55788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL 352 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 352 (519)
.+...|.+.|++++|...++++.+ .+..+|..+...+...|++++|...++++.+.. +.+..++..+...+...|+
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999998753 357789999999999999999999999988753 3367788899999999999
Q ss_pred HHHHHHHHHHHHHcCCCc-----------CHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 353 VEEGKVYFDSMAKHGLKP-----------ELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 353 ~~~a~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+++|...++++.+..-.. +...+..+..++.+.|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999998643111 4678899999999999999999998865
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.2e-15 Score=137.02 Aligned_cols=246 Identities=10% Similarity=-0.007 Sum_probs=192.9
Q ss_pred HHHhcCCChhhHHHHHHHHHHhCCCChH--HHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHH
Q 044422 143 TSCGSTRNIRGGAPYQCLAIRTGFIANV--YVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMC 220 (519)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a 220 (519)
+..-..|+++.|....+.... ..|+. ...-.+..+|...|+++.|+..++....|+..++..+...+...++.++|
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHH
Confidence 444567888888887765432 34443 35566778999999999999988876667777888899999999999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 044422 221 LELYRMMRNSMLEPN-DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG 299 (519)
Q Consensus 221 ~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 299 (519)
++.++++...+..|+ ...+..+...+...|++++|.+.++. +.+...+..++..|.+.|++++|.+.|+.+.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999988765564 45566677889999999999999877 56788899999999999999999999998864
Q ss_pred --CChhHH---HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHH
Q 044422 300 --KDIVSW---NSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDH 374 (519)
Q Consensus 300 --~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 374 (519)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++..+.. +-+..+
T Consensus 159 ~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~ 236 (291)
T 3mkr_A 159 QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPET 236 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 443211 12223344558999999999999887 45578889999999999999999999999988753 346778
Q ss_pred HHHHHHHHHHcCCHHH-HHHHHHhC
Q 044422 375 YSCVVDLLGRAGLLEE-ARDFIKQM 398 (519)
Q Consensus 375 ~~~li~~~~~~g~~~~-A~~~~~~~ 398 (519)
+..++..+...|+.++ +.++++++
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8889999999999876 46666654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-14 Score=142.40 Aligned_cols=343 Identities=12% Similarity=-0.013 Sum_probs=229.4
Q ss_pred CHHHHHHHHHHHhHC-----C---CCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhC------CC-ChHHHHHHHHHH
Q 044422 115 DVEKLISMHHDLHRE-----R---LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTG------FI-ANVYVGSSLITL 179 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~-----g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~-~~~~~~~~li~~ 179 (519)
+.++|++.|++..+. + .+....+|+.+..+|...|++++|...++...+.. .. ....++..+..+
T Consensus 66 ~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~ 145 (472)
T 4g1t_A 66 QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWT 145 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHH
Confidence 888888888876431 1 22345689999999999999999999998886531 11 234566666666
Q ss_pred HHhC--CCHHHHHHHHccCC--CC-ChhHHHHHHHH---HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---
Q 044422 180 YSKC--RVIIDAYKVFEEMP--VR-NVVSWTAIIAA---FAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG--- 248 (519)
Q Consensus 180 ~~~~--g~~~~A~~~~~~m~--~~-~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~--- 248 (519)
+.+. +++++|+..|++.. .| ++..+..+..+ +...++.++|++.+++..+.. +.+...+..+...+..
T Consensus 146 ~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~ 224 (472)
T 4g1t_A 146 RLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMRE 224 (472)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC-
T ss_pred HHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHh
Confidence 6554 57999999999876 33 45555555444 455678889999998887754 3355666666555544
Q ss_pred -cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHc---------
Q 044422 249 -SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--K-DIVSWNSMIAGYAQH--------- 315 (519)
Q Consensus 249 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~--------- 315 (519)
.|+.++|.+.++...... +.+..++..+...|...|++++|...|++..+ | +..++..+..+|...
T Consensus 225 ~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 225 EGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp -----CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHH
Confidence 467889999999988875 66788899999999999999999999998764 3 455666665555322
Q ss_pred ----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHH--HHHHHHH-HH
Q 044422 316 ----------GLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELD--HYSCVVD-LL 382 (519)
Q Consensus 316 ----------g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~-~~ 382 (519)
+..+.|...+++..+.. +.+..++..+...+...|++++|...|++..+....+... .+..+.. .+
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 23567788888776653 2244567788889999999999999999998855333221 2233332 23
Q ss_pred HHcCCHHHHHHHHHhC-CCCCCHHHH--------HHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 044422 383 GRAGLLEEARDFIKQM-PIYPNAVIW--------EAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLK 453 (519)
Q Consensus 383 ~~~g~~~~A~~~~~~~-~~~p~~~~~--------~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~ 453 (519)
...|++++|...|++. .+.|+...+ ..+++++..+|.++.+|..|+.+|...|++++|++.|++..+.|-.
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4679999999999876 556654333 3456778899999999999999999999999999999999988754
Q ss_pred CCCeeEE
Q 044422 454 TNPGCSW 460 (519)
Q Consensus 454 ~~~~~~~ 460 (519)
.+...+|
T Consensus 463 ~p~a~~~ 469 (472)
T 4g1t_A 463 IPSASSW 469 (472)
T ss_dssp -------
T ss_pred CCcHhhc
Confidence 4443444
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-15 Score=142.28 Aligned_cols=260 Identities=9% Similarity=-0.039 Sum_probs=213.4
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044422 169 NVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSA 245 (519)
Q Consensus 169 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 245 (519)
+...+-.+...+...|++++|..+|+++. +.+...|..+..++...|++++|...|+++.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 33456677888999999999999999885 3567789999999999999999999999998864 4467889999999
Q ss_pred HHccCCchHHHHHHHHHHHcCCCCcHHHHHHH--------------HH-HHHhcCCHHHHHHHHHhcCC---CChhHHHH
Q 044422 246 CTGSGALGQGRSAHCQTIRMGFFSYIQVANSL--------------IS-MYCKCGNVEEAVYVFNNMHG---KDIVSWNS 307 (519)
Q Consensus 246 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ 307 (519)
+...|++++|...++.+.+.. +.+...+..+ .. .+...|++++|...++++.+ .+...+..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 999999999999999998764 2223333332 22 37778899999999998754 36788999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCC
Q 044422 308 MIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGL 387 (519)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 387 (519)
+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...|...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998763 3367788999999999999999999999998753 3467889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCC------------CchhHHHHHHHHhccCCHHHHHHHHHHH
Q 044422 388 LEEARDFIKQMPIYPNAVIWEAAESRLLLEPE------------CAATHVQLANLYAGVRCWDQAARVRKLM 447 (519)
Q Consensus 388 ~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~------------~~~~~~~L~~~~~~~g~~~~A~~~~~~m 447 (519)
+++|.+.++++ +...|. ++.++..+..+|...|++++|..++++.
T Consensus 256 ~~~A~~~~~~a---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRA---------------IYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHH---------------HHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHH---------------HHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999998865 233344 4567888999999999999999998753
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.9e-12 Score=126.59 Aligned_cols=305 Identities=14% Similarity=0.046 Sum_probs=249.8
Q ss_pred cCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc----CCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHh----CCC
Q 044422 114 VDVEKLISMHHDLHRERLKVDASFLSTAVTSCGS----TRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSK----CRV 185 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~ 185 (519)
.+.++|++.|++..+.| +...+..+...+.. .+++++|...|+...+.| +...+..|...|.. .++
T Consensus 93 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 93 QDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 38999999999998876 66777777777777 789999999999998877 56677778888877 789
Q ss_pred HHHHHHHHccCC-CCChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCchHHH
Q 044422 186 IIDAYKVFEEMP-VRNVVSWTAIIAAFAQ----EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG----SGALGQGR 256 (519)
Q Consensus 186 ~~~A~~~~~~m~-~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~ 256 (519)
+++|.+.|++.. ..+..++..+...|.. .++.++|...|++..+.| +...+..+...+.. .++.++|.
T Consensus 167 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 167 YVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999998875 3577888888888888 899999999999998865 45667777777775 78999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHc-----CChHHHHHHHH
Q 044422 257 SAHCQTIRMGFFSYIQVANSLISMYCK----CGNVEEAVYVFNNMHG-KDIVSWNSMIAGYAQH-----GLAVRAIDLFE 326 (519)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~ 326 (519)
..++...+.| +...+..+...|.. .++.++|...|+...+ .+...+..+...|... +++++|...|+
T Consensus 244 ~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 244 VLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 9999988865 45567777777877 8999999999998765 4667788888888887 89999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHhCC
Q 044422 327 EMMKQRVKPDAITFLGVISSCRHGG---LVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGR----AGLLEEARDFIKQMP 399 (519)
Q Consensus 327 ~m~~~~~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~ 399 (519)
+..+.| +...+..+...+...| +.++|.+.|++..+.| +...+..+...|.. .+++++|.+.|++.-
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 394 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA 394 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 998875 4456666777776656 7899999999998864 56788888888988 899999999998652
Q ss_pred CCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCC
Q 044422 400 IYPNAVIWEAAESRLLLEPECAATHVQLANLYAG----VRCWDQAARVRKLMKDKGLK 453 (519)
Q Consensus 400 ~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~m~~~g~~ 453 (519)
+ ..++.++..|...|.. .+++++|...|++..+.|..
T Consensus 395 ---------------~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 395 ---------------E--QGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp ---------------H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred ---------------h--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 1 1235567778999988 89999999999999988743
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-12 Score=139.08 Aligned_cols=358 Identities=13% Similarity=0.128 Sum_probs=259.4
Q ss_pred hhccCccchhhHHhhhhhcCCC-CCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccC
Q 044422 37 KQISSSKSLHKALRVLDIISPR-TRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVD 115 (519)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (519)
+.+...|.+.+|+++++.+.-. ..+.......+.++.+.++.+... ...+...+ + ......+-..+.. .+.
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~R--v~eyI~kL---d-~~d~~eIA~Iai~--lgl 1064 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTR--VMEYINRL---D-NYDAPDIANIAIS--NEL 1064 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhh--HHHHHHHh---h-hccHHHHHHHHHh--CCC
Confidence 4445889999999999998632 234466778888888887775321 11111111 1 1111222222333 348
Q ss_pred HHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHcc
Q 044422 116 VEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEE 195 (519)
Q Consensus 116 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 195 (519)
+++|..+|++... .....+.++. ..+++++|.++.+.. -+..+|..+..++...|++++|++.|.+
T Consensus 1065 yEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999631 2222333433 667899999888754 2467899999999999999999999976
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHH
Q 044422 196 MPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVAN 275 (519)
Q Consensus 196 m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (519)
. .|...|..++.++.+.|++++|.+.|...++.. ++....+.++.+|++.+++++...+. + .++...|.
T Consensus 1131 A--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~ 1199 (1630)
T 1xi4_A 1131 A--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQ 1199 (1630)
T ss_pred c--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHH
Confidence 5 678888999999999999999999998877654 33333345999999999888655443 2 34566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEE 355 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 355 (519)
.+...|...|++++|..+|... ..|..+..+|++.|++++|.+.+++. -+..+|..+-.+|...|++..
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHH
Confidence 8999999999999999999975 58999999999999999999999886 256788888888999999888
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHH-------------------HHHHHhh
Q 044422 356 GKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNA-VIW-------------------EAAESRL 414 (519)
Q Consensus 356 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~-------------------~~~~~~~ 414 (519)
|...... +..+...+..++..|.+.|.+++|..+++.. +..|.- ..| .......
T Consensus 1269 A~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A 1269 AQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred HHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 8876553 3445667778899999999999999999765 333221 122 1112222
Q ss_pred hcCC-----CCchhHHHHHHHHhccCCHHHHHHH
Q 044422 415 LLEP-----ECAATHVQLANLYAGVRCWDQAARV 443 (519)
Q Consensus 415 ~~~~-----~~~~~~~~L~~~~~~~g~~~~A~~~ 443 (519)
.+.| .+...|..+.-.|.+.|+++.|...
T Consensus 1344 ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1344 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 2333 4456788899999999999999854
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.4e-12 Score=125.61 Aligned_cols=303 Identities=11% Similarity=0.041 Sum_probs=251.5
Q ss_pred cCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc----CCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHh----CCC
Q 044422 114 VDVEKLISMHHDLHRERLKVDASFLSTAVTSCGS----TRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSK----CRV 185 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~ 185 (519)
++.++|+..|+...+.| +...+..+-..|.. .+++++|...|....+.| +...+..|...|.. .++
T Consensus 57 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 48999999999999875 66777788888887 899999999999998876 56677778888888 889
Q ss_pred HHHHHHHHccCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCchHHH
Q 044422 186 IIDAYKVFEEMPV-RNVVSWTAIIAAFAQ----EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG----SGALGQGR 256 (519)
Q Consensus 186 ~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~ 256 (519)
+++|...|++..+ .++..+..+...|.. .++.++|.+.|++..+.| +...+..|...|.. .++.++|.
T Consensus 131 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 131 KAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 9999999998763 467788888888887 789999999999998875 56778888888887 89999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHH
Q 044422 257 SAHCQTIRMGFFSYIQVANSLISMYCK----CGNVEEAVYVFNNMHG-KDIVSWNSMIAGYAQ----HGLAVRAIDLFEE 327 (519)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 327 (519)
..++...+.| +...+..+...|.. .+++++|...|++..+ .+...+..+...|.. .++.++|...|++
T Consensus 208 ~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~ 284 (490)
T 2xm6_A 208 QWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRK 284 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 9999998875 45677888888886 7899999999998765 466777888888888 8999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcC---CHHHHHHHHHhCC
Q 044422 328 MMKQRVKPDAITFLGVISSCRHG-----GLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAG---LLEEARDFIKQMP 399 (519)
Q Consensus 328 m~~~~~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~ 399 (519)
..+.| +...+..+...+... ++.++|...+++..+.| +...+..+...|...| +.++|.+.|++.-
T Consensus 285 a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 285 SAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 98765 455666777777776 89999999999999875 4566777888888766 7888888888651
Q ss_pred CCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhc----cCCHHHHHHHHHHHHHCC
Q 044422 400 IYPNAVIWEAAESRLLLEPECAATHVQLANLYAG----VRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 400 ~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~m~~~g 451 (519)
+ ..++.++..|...|.. .+++++|...|++..+.|
T Consensus 359 ---------------~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 359 ---------------A--KGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp ---------------H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ---------------H--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 1 1345677778999988 899999999999998876
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-13 Score=124.54 Aligned_cols=223 Identities=13% Similarity=0.028 Sum_probs=154.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCC--CCc----HHHHH
Q 044422 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGF--FSY----IQVAN 275 (519)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~ 275 (519)
..|..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...++...+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 355666666777777777777777766655 5566666777777777777777777766655321 111 46677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHG--KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLV 353 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 353 (519)
.+...|.+.|++++|...|+...+ ++ ...+.+.|++++|...++++.... +.+...+..+...+...|++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 777777777777777777776553 33 234556677788888888777652 22345667777778888888
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhc
Q 044422 354 EEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAG 433 (519)
Q Consensus 354 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 433 (519)
++|...+++..+.. +.+...+..+...|...|++++|...+++. ++..|.++.+|..+..+|..
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---------------l~~~~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKA---------------IEKDPNFVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHH---------------HHhCHHHHHHHHHHHHHHHH
Confidence 88888888887643 335677778888888888888888877654 44566777777778888888
Q ss_pred cCCHHHHHHHHHHHHHC
Q 044422 434 VRCWDQAARVRKLMKDK 450 (519)
Q Consensus 434 ~g~~~~A~~~~~~m~~~ 450 (519)
.|++++|...+++..+.
T Consensus 220 ~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 220 VKEYASALETLDAARTK 236 (258)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHh
Confidence 88888888888877654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-13 Score=120.87 Aligned_cols=209 Identities=13% Similarity=0.018 Sum_probs=123.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 044422 200 NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLIS 279 (519)
Q Consensus 200 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 279 (519)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...++...+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44455555666666666666666666655543 2344555555556666666666666666555543 333444444444
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 044422 280 MYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVY 359 (519)
Q Consensus 280 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 359 (519)
++.+.+. . ... .+...|++++|...+++..+... -+...+..+..++...|++++|...
T Consensus 82 ~~~~~~~---------~--~~~---------~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 82 AYVALYR---------Q--AED---------RERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp HHHHHHH---------T--CSS---------HHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhhh---------h--hhh---------hcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHH
Confidence 4443300 0 000 01122788888888888776532 2456777777788888888888888
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHH
Q 044422 360 FDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQ 439 (519)
Q Consensus 360 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~ 439 (519)
|++..+.. .+...+..+..+|...|++++|...|++. ++++|.++.++..+..++...|++++
T Consensus 141 ~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a---------------l~~~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 141 LKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKA---------------LEQAPKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------HHHSTTCHHHHHHHHHHHTC------
T ss_pred HHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCCCChHHHHHHHHHHHHccCHHH
Confidence 88888766 67777888888888888888888877643 56678888888888888888888888
Q ss_pred HHHHHHHHH
Q 044422 440 AARVRKLMK 448 (519)
Q Consensus 440 A~~~~~~m~ 448 (519)
|...+++..
T Consensus 204 A~~~~~~~~ 212 (217)
T 2pl2_A 204 AARAAALEH 212 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 888887653
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-11 Score=122.68 Aligned_cols=353 Identities=7% Similarity=0.043 Sum_probs=241.7
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHH
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLI 120 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 120 (519)
..|++++|..+|+...+ ..+.+...|...+....+.+ ++++|.
T Consensus 24 ~~~~~~~a~~~~e~al~--~~P~~~~~w~~~~~~~~~~~-----------------------------------~~~~a~ 66 (530)
T 2ooe_A 24 QNQPIDKARKTYERLVA--QFPSSGRFWKLYIEAEIKAK-----------------------------------NYDKVE 66 (530)
T ss_dssp HSSCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTT-----------------------------------CHHHHH
T ss_pred HhCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhcC-----------------------------------CHHHHH
Confidence 46788888888888763 33455566666666665554 889999
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHH-hcCCChhhHHH----HHHHHHHh-CCCC-hHHHHHHHHHHHHh---------CC
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSC-GSTRNIRGGAP----YQCLAIRT-GFIA-NVYVGSSLITLYSK---------CR 184 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g 184 (519)
.+|++..+.. |+...|...+... ...|+.+.|.+ +|+..++. |..| +...|...+....+ .|
T Consensus 67 ~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 144 (530)
T 2ooe_A 67 KLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQ 144 (530)
T ss_dssp HHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHH
T ss_pred HHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHh
Confidence 9999998753 6777777666533 34577777665 66666543 5443 45677777776654 68
Q ss_pred CHHHHHHHHccCCC-CCh---hHHHHHHHHH-------------HhcCChHHHHHHHHHHH------HCC---CCCC---
Q 044422 185 VIIDAYKVFEEMPV-RNV---VSWTAIIAAF-------------AQEWQVDMCLELYRMMR------NSM---LEPN--- 235 (519)
Q Consensus 185 ~~~~A~~~~~~m~~-~~~---~~~~~li~~~-------------~~~~~~~~a~~~~~~m~------~~g---~~p~--- 235 (519)
+++.|..+|++... |.. ..|....... .+.+++..|..++.+.. +.. ++|+
T Consensus 145 ~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 145 RITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp HHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 89999999988764 322 2333222210 12345677777766532 111 3444
Q ss_pred -----HHHHHHHHHHHHcc----CCc----hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-------cCCHH-------
Q 044422 236 -----DFTFTSILSACTGS----GAL----GQGRSAHCQTIRMGFFSYIQVANSLISMYCK-------CGNVE------- 288 (519)
Q Consensus 236 -----~~t~~~ll~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~------- 288 (519)
...|...+...... ++. +.+..+|+...... +.+..+|..+...+.+ .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 23444444333221 232 36677888887763 5567888888888775 68876
Q ss_pred HHHHHHHhcCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHH
Q 044422 289 EAVYVFNNMHG---K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD--AITFLGVISSCRHGGLVEEGKVYFDS 362 (519)
Q Consensus 289 ~a~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~ 362 (519)
+|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|+++.|..+|++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 89999998764 3 5678888999999999999999999999884 454 24788888888889999999999999
Q ss_pred HHHcCCCcCHHHHHHHHHH-HHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHH
Q 044422 363 MAKHGLKPELDHYSCVVDL-LGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAA 441 (519)
Q Consensus 363 m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~ 441 (519)
..+.. +.+...|...... +...|+.++|..+|+.. ++..|+++..+..++..+.+.|++++|.
T Consensus 382 Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~a---------------l~~~p~~~~~~~~~~~~~~~~g~~~~Ar 445 (530)
T 2ooe_A 382 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELG---------------LKKYGDIPEYVLAYIDYLSHLNEDNNTR 445 (530)
T ss_dssp HHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHTTTTCHHHHH
T ss_pred HHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHH---------------HHHCCCCHHHHHHHHHHHHhCCCHhhHH
Confidence 88742 2233333322222 34688999999888754 4556777888888899999999999999
Q ss_pred HHHHHHHHCC
Q 044422 442 RVRKLMKDKG 451 (519)
Q Consensus 442 ~~~~~m~~~g 451 (519)
.+|++....+
T Consensus 446 ~~~~~al~~~ 455 (530)
T 2ooe_A 446 VLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHhcc
Confidence 9999988874
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-12 Score=117.46 Aligned_cols=218 Identities=10% Similarity=-0.028 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC--C----C----hhHH
Q 044422 135 ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV--R----N----VVSW 204 (519)
Q Consensus 135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~----~----~~~~ 204 (519)
...+..+...+...|+++.|...++.+.+.. .+..++..+..++...|++++|...|++... | + ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4566777778888888888888888888877 6777888888888888888888888887652 1 1 4677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 044422 205 TAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC 284 (519)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (519)
..+..++...|++++|...|++.... .|+. ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 78888888888888888888887764 3443 23455567777777777777653 34556677777777777
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 044422 285 GNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFD 361 (519)
Q Consensus 285 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 361 (519)
|++++|...|++..+ .+..+|..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|...++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 777777777776543 345667777777777777777777777776643 2245666667777777777777777777
Q ss_pred HHHH
Q 044422 362 SMAK 365 (519)
Q Consensus 362 ~m~~ 365 (519)
+..+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.6e-12 Score=116.94 Aligned_cols=244 Identities=11% Similarity=0.045 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 044422 171 YVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEP--NDFTFTSILSA 245 (519)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~ 245 (519)
..+-.....+...|++++|+..|++.. +.+...|..+..++...|++++|+..+++....+..| ....|..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344456667778888888888888764 2355578888888899999999999998887743222 23457888889
Q ss_pred HHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHH
Q 044422 246 CTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAI 322 (519)
Q Consensus 246 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 322 (519)
+...|++++|...++...+.. +.+..++..+...|...|++++|...|++..+ .+...|..+...+...+++++|.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888865 45678899999999999999999999998875 25567777773455566999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcC-CCcC------HHHHHHHHHHHHHcCCHHHHH
Q 044422 323 DLFEEMMKQRVKPDAITFLGVISSCRHGGL---VEEGKVYFDSMAKHG-LKPE------LDHYSCVVDLLGRAGLLEEAR 392 (519)
Q Consensus 323 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~~~A~ 392 (519)
..|++..+.. +.+...+..+..++...|+ .+.|...+++..+.. -.|+ ...|..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999998863 2246677777788888887 788888888887521 1233 257788999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHH
Q 044422 393 DFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLY 431 (519)
Q Consensus 393 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 431 (519)
+.+++. ++++|.++.++..+....
T Consensus 242 ~~~~~a---------------l~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 242 AAWKNI---------------LALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHH---------------HHHCTTCHHHHHHHC---
T ss_pred HHHHHH---------------HhcCccHHHHHHHhhhhh
Confidence 988765 455666655555444433
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-12 Score=114.99 Aligned_cols=196 Identities=14% Similarity=-0.029 Sum_probs=120.3
Q ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044422 167 IANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSIL 243 (519)
Q Consensus 167 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 243 (519)
+++...+..+...+.+.|++++|...|++.. +.+...|..+..++.+.|++++|+..|++..+.. +-+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 5677889999999999999999999999875 3467789999999999999999999999998864 34567788888
Q ss_pred HHHHcc-----------CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHH
Q 044422 244 SACTGS-----------GALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGY 312 (519)
Q Consensus 244 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 312 (519)
.++... |++++|...++...+.. +.+. ..|..+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~-------------------------------~~~~~lg~~~ 128 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYA-------------------------------PLHLQRGLVY 128 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCH-------------------------------HHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccH-------------------------------HHHHHHHHHH
Confidence 888777 55555555555555442 2233 4444444555
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 044422 313 AQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEAR 392 (519)
Q Consensus 313 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 392 (519)
...|++++|...|++..+.. .+...+..+..++...|++++|...|++..+.. +.+...+..+...+...|++++|.
T Consensus 129 ~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 129 ALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------
T ss_pred HHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHH
Confidence 55555555555555555443 344455555555555555555555555555432 223444555555555555555555
Q ss_pred HHHHhC
Q 044422 393 DFIKQM 398 (519)
Q Consensus 393 ~~~~~~ 398 (519)
..+++.
T Consensus 206 ~~~~~~ 211 (217)
T 2pl2_A 206 RAAALE 211 (217)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 555543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-12 Score=119.76 Aligned_cols=238 Identities=11% Similarity=-0.045 Sum_probs=171.7
Q ss_pred cCHHHHHHHHHHHhHCCC---CCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHH
Q 044422 114 VDVEKLISMHHDLHRERL---KVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAY 190 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 190 (519)
+++++|+..|+.+.+... +.+..++..+...+...|+++.|...++.+.+.. +.+..+|..+..+|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 489999999999987642 1246678888889999999999999999998875 456788999999999999999999
Q ss_pred HHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCC
Q 044422 191 KVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGF 267 (519)
Q Consensus 191 ~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 267 (519)
..|++.. +.+..+|..+..++...|++++|...|+++.+. .|+.......+..+...|++++|...++......
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 9998876 346778889999999999999999999998874 3444444455556677788999999887776653
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 044422 268 FSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKD-------IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITF 340 (519)
Q Consensus 268 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 340 (519)
+++...+. ++..+...++.++|...+....+.+ ..+|..+...|.+.|++++|...|++..+.. |+. +
T Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~ 249 (275)
T 1xnf_A 175 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--F 249 (275)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--C
T ss_pred CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--H
Confidence 33433333 6666777777888888888776532 3566667777777777777777777776542 321 1
Q ss_pred HHHHHHHHccCCHHHHHHHH
Q 044422 341 LGVISSCRHGGLVEEGKVYF 360 (519)
Q Consensus 341 ~~ll~~~~~~g~~~~a~~~~ 360 (519)
.....++...|++++|.+.+
T Consensus 250 ~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhhHHHH
Confidence 12233445556666655544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=9.1e-13 Score=121.79 Aligned_cols=220 Identities=7% Similarity=-0.116 Sum_probs=117.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYC 282 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (519)
+|..+..++...|++++|...|++..+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+...|.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHH
Confidence 34444444444555555555554444432 2234445555555555555555555555554432 233455555555555
Q ss_pred hcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 044422 283 KCGNVEEAVYVFNNMHG--KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYF 360 (519)
Q Consensus 283 ~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 360 (519)
+.|++++|...|+.+.+ |+.......+..+...|++++|...+++..... +++...+. ++..+...++.++|...+
T Consensus 123 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~ 200 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERL 200 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHH
Confidence 55555555555555432 322233333334455677777777776665542 22333333 555666667777777777
Q ss_pred HHHHHcCCC--c-CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCH
Q 044422 361 DSMAKHGLK--P-ELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCW 437 (519)
Q Consensus 361 ~~m~~~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~ 437 (519)
+...+.... | +...+..+...|.+.|++++|...+++. +..+|.+... ...++...|++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---------------l~~~p~~~~~---~~~~~~~l~~~ 262 (275)
T 1xnf_A 201 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA---------------VANNVHNFVE---HRYALLELSLL 262 (275)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HTTCCTTCHH---HHHHHHHHHHH
T ss_pred HHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HhCCchhHHH---HHHHHHHHHHH
Confidence 776542211 1 1466777788888888888888877755 2233333222 25566677777
Q ss_pred HHHHHHH
Q 044422 438 DQAARVR 444 (519)
Q Consensus 438 ~~A~~~~ 444 (519)
++|++.+
T Consensus 263 ~~a~~~~ 269 (275)
T 1xnf_A 263 GQDQDDL 269 (275)
T ss_dssp HHC----
T ss_pred HhhHHHH
Confidence 7777665
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-11 Score=112.82 Aligned_cols=201 Identities=11% Similarity=-0.008 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 044422 201 VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISM 280 (519)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 280 (519)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455555566666666666666666655432 2244555555555555666666665555555443 2234444444444
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHH
Q 044422 281 YCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKP-DAITFLGVISSCRHGGLVEEGKVY 359 (519)
Q Consensus 281 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~ 359 (519)
+...|++++|.++++++.+.+..| +...+..+...+...|++++|...
T Consensus 115 -------------------------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 115 -------------------------------LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp -------------------------------HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------------------HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444555555555554444422222 233444444455555555555555
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHH
Q 044422 360 FDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQ 439 (519)
Q Consensus 360 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~ 439 (519)
+++..+.. +.+...+..+...|...|++++|...++++ ++..|.+...+..+...+...|++++
T Consensus 164 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (252)
T 2ho1_A 164 FEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLF---------------AQGGGQNARSLLLGIRLAKVFEDRDT 227 (252)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HTTSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCcCcHHHHHHHHHHHHHccCHHH
Confidence 55555432 223445555555555555555555555433 22333444444455555566666666
Q ss_pred HHHHHHHHHHC
Q 044422 440 AARVRKLMKDK 450 (519)
Q Consensus 440 A~~~~~~m~~~ 450 (519)
|.+.++++.+.
T Consensus 228 A~~~~~~~~~~ 238 (252)
T 2ho1_A 228 AASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-11 Score=111.66 Aligned_cols=194 Identities=9% Similarity=-0.052 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHH
Q 044422 135 ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAF 211 (519)
Q Consensus 135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~ 211 (519)
...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...|++++|.+.|++.. +.+...|..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 4566777777788888888888888887764 4456677777777777888888777777664 23556677777777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 044422 212 AQEWQVDMCLELYRMMRNSMLEP-NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEA 290 (519)
Q Consensus 212 ~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 290 (519)
...|++++|...|+++...+..| +...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777776533334 34556666666667777777777776666553 33445555555555555555555
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 291 VYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 291 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
...++.+.+ .+...+..+...+...|++++|.+.++++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555432 2334444555555555555555555555544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-10 Score=108.02 Aligned_cols=223 Identities=12% Similarity=0.017 Sum_probs=158.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCchHHHHHHHHHHHcCCCCcHHHHH
Q 044422 200 NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG----SGALGQGRSAHCQTIRMGFFSYIQVAN 275 (519)
Q Consensus 200 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (519)
++.++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44566666677777777777777777776622 34556666667777 777777777777777665 556667
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044422 276 SLISMYCK----CGNVEEAVYVFNNMHG-KDIVSWNSMIAGYAQ----HGLAVRAIDLFEEMMKQRVKPDAITFLGVISS 346 (519)
Q Consensus 276 ~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 346 (519)
.+...|.. .+++++|...|++..+ .+..++..+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 77777777 7777777777776543 356677777777777 788888888888887765 45566666667
Q ss_pred HHc----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCC
Q 044422 347 CRH----GGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGR----AGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEP 418 (519)
Q Consensus 347 ~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~ 418 (519)
+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.+++.- +..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~---------------~~~- 216 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKAC---------------ELE- 216 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH---------------HTT-
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH---------------hCC-
Confidence 776 788888888888887754 45667777888888 888888888887651 111
Q ss_pred CCchhHHHHHHHHhc----cCCHHHHHHHHHHHHHCC
Q 044422 419 ECAATHVQLANLYAG----VRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 419 ~~~~~~~~L~~~~~~----~g~~~~A~~~~~~m~~~g 451 (519)
++.++..|...|.. .+++++|.+.|++..+.|
T Consensus 217 -~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 217 -NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp -CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 13455667888887 888888888888887766
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-11 Score=106.65 Aligned_cols=197 Identities=11% Similarity=0.032 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044422 170 VYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSAC 246 (519)
Q Consensus 170 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 246 (519)
..++..+...+...|++++|...|++.. +.+...|..+..++...|++++|...+++..... +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 3445555555555555555555555443 2234445555555555555555555555554432 22344444455555
Q ss_pred Hcc-CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 044422 247 TGS-GALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLF 325 (519)
Q Consensus 247 ~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 325 (519)
... |++++|...++.+.+.+..|+ +...+..+...+...|++++|...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~ 136 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPT------------------------------PYIANLNKGICSAKQGQFGLAEAYL 136 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSC------------------------------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcc------------------------------hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555 555555555554444211111 1234444444555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 326 EEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 326 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+++.+.. +.+...+..+...+...|++++|...++++.+..-..+...+..+...+...|+.++|..+++.+
T Consensus 137 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 137 KRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 5544432 11344444555555555555555555555544321123444444444555555555555554443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-11 Score=108.35 Aligned_cols=196 Identities=9% Similarity=-0.020 Sum_probs=153.1
Q ss_pred CCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHH
Q 044422 133 VDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIA 209 (519)
Q Consensus 133 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~ 209 (519)
.+...+..+...+...|+++.|...++.+.+.. +.+..++..+...+...|++++|...|++.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 356778888999999999999999999998875 4567889999999999999999999999875 356778999999
Q ss_pred HHHhc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 044422 210 AFAQE-WQVDMCLELYRMMRNSMLEPN-DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNV 287 (519)
Q Consensus 210 ~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 287 (519)
.+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++.+.+.. +.+...+..+...+.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999988433443 5678888999999999999999999888764 34466666677777777777
Q ss_pred HHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 288 EEAVYVFNNMHG----KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 288 ~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
++|...++.+.+ .+...+..+...+...|+.+.|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 777766665432 3444555555555666666666666666554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.1e-12 Score=115.01 Aligned_cols=194 Identities=8% Similarity=0.027 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 044422 201 VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISM 280 (519)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 280 (519)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3344555555555555666655555555432 2344555555555566666666666665555543 3345555566666
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 044422 281 YCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGK 357 (519)
Q Consensus 281 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 357 (519)
|...|++++|.+.++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666655432 345556666666666777777777766665542 224556666666677777777777
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 358 VYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 358 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
..++++.+.. +.+..++..+...|...|++++|.+.++++
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777766542 234556666777777777777777666644
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-10 Score=106.96 Aligned_cols=221 Identities=10% Similarity=-0.018 Sum_probs=123.0
Q ss_pred CHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHh----CCCHHHHHHHHccCCC-CChhHHHHHH
Q 044422 134 DASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSK----CRVIIDAYKVFEEMPV-RNVVSWTAII 208 (519)
Q Consensus 134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li 208 (519)
++.++..+...+...|++++|...|+...+.+ +...+..+...|.. .+++++|...|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44555556666666667777777776666632 34455556666666 6666666666665542 3455566666
Q ss_pred HHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 044422 209 AAFAQ----EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG----SGALGQGRSAHCQTIRMGFFSYIQVANSLISM 280 (519)
Q Consensus 209 ~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 280 (519)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66666 666666666666665543 44555556666665 666666666666665544 33444455555
Q ss_pred HHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--
Q 044422 281 YCK----CGNVEEAVYVFNNMHG-KDIVSWNSMIAGYAQ----HGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRH-- 349 (519)
Q Consensus 281 ~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~-- 349 (519)
|.. .+++++|...|++..+ .+...+..+...|.. .+++++|...|++..+.+. ...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCC
Confidence 555 5555555555554432 233444455555555 5555555555555554421 3334444444444
Q ss_pred --cCCHHHHHHHHHHHHHc
Q 044422 350 --GGLVEEGKVYFDSMAKH 366 (519)
Q Consensus 350 --~g~~~~a~~~~~~m~~~ 366 (519)
.+++++|...+++..+.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHc
Confidence 45555555555555443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-09 Score=116.73 Aligned_cols=315 Identities=13% Similarity=0.059 Sum_probs=213.6
Q ss_pred hhccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCH
Q 044422 37 KQISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDV 116 (519)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (519)
..+...|.+++|..+|+... ......+.++... +..+.+..+...+.. +..| ..+-..... .+.+
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie~i----~nldrAiE~Aervn~--p~vW-sqLAKAql~--~G~~ 1121 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD------VNTSAVQVLIEHI----GNLDRAYEFAERCNE--PAVW-SQLAKAQLQ--KGMV 1121 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHHHH----hhHHHHHHHHHhcCC--HHHH-HHHHHHHHh--CCCH
Confidence 34457899999999999863 2233334445444 223334444433321 1111 122222222 3488
Q ss_pred HHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccC
Q 044422 117 EKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEM 196 (519)
Q Consensus 117 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 196 (519)
++|++.|.+. -|...|..++.+|.+.|++++|.+.+....+.. +++...+.++.+|++.+++++...+.
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 8888888664 377788888888888888888888887766543 44444455888888888888655443
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHH
Q 044422 197 PVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANS 276 (519)
Q Consensus 197 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 276 (519)
..++...|..+...|...|++++|..+|... ..|..+..++++.|++++|.+.+... .+..+|..
T Consensus 1191 ~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A 1191 NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence 3556677777888888888899998888774 37888888888888888888888765 45678888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--CCHH
Q 044422 277 LISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG--GLVE 354 (519)
Q Consensus 277 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~--g~~~ 354 (519)
+-.+|...|++..|...... ..-++..+..++..|.+.|.+++|+.+++...... +-....|+-+...+++. +++.
T Consensus 1256 v~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHH
Confidence 88888888888888887765 33355667788999999999999999998776433 22334555555555553 3344
Q ss_pred HHHHHHHHHHHcCCCc------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044422 355 EGKVYFDSMAKHGLKP------ELDHYSCVVDLLGRAGLLEEARDFIK 396 (519)
Q Consensus 355 ~a~~~~~~m~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (519)
++.+.|..- -+++| +...|..++..|.+.|+++.|...+-
T Consensus 1334 Ehlk~f~~r--ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1334 EHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred HHHHHHHHh--cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 444444322 22333 56779999999999999999985443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=8.8e-12 Score=112.76 Aligned_cols=200 Identities=12% Similarity=0.072 Sum_probs=155.9
Q ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHH
Q 044422 234 PNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIA 310 (519)
Q Consensus 234 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 310 (519)
....+|..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+.+.+ .+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 345677888889999999999999999998864 55788999999999999999999999998753 46788999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHH
Q 044422 311 GYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEE 390 (519)
Q Consensus 311 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 390 (519)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998864 3467788889999999999999999999998753 3467888899999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 391 ARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 391 A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
|.+.++++ +...|.++.++..++.+|...|++++|...+++..+..
T Consensus 178 A~~~~~~~---------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAV---------------TEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHH---------------HHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99988755 45567777888889999999999999999999998754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-10 Score=114.10 Aligned_cols=304 Identities=11% Similarity=-0.028 Sum_probs=212.7
Q ss_pred CCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC-----
Q 044422 131 LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRT--------GFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP----- 197 (519)
Q Consensus 131 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----- 197 (519)
.......|+.+...+...|+.++|.+.|+..++. ..+....+|+.+..+|...|++++|...+++..
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3445678999999999999999999999987653 122345689999999999999999999887653
Q ss_pred --C----CChhHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHccCCchHHHHHHHHHHHcC
Q 044422 198 --V----RNVVSWTAIIAAFAQE--WQVDMCLELYRMMRNSMLEPNDFTFTSILSA---CTGSGALGQGRSAHCQTIRMG 266 (519)
Q Consensus 198 --~----~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~---~~~~g~~~~a~~~~~~~~~~~ 266 (519)
. ....+|+.+..++... +++++|+..|++..+.. +-+...+..+..+ +...++.++|.+.++...+..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1 1345666666666554 46999999999988753 2234444444444 445678889999998888765
Q ss_pred CCCcHHHHHHHHHHHHhc----CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 044422 267 FFSYIQVANSLISMYCKC----GNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAIT 339 (519)
Q Consensus 267 ~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 339 (519)
+.+..++..+...+... +++++|.+.+++... .+..++..+...|...|++++|...+++..+... -+..+
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~ 283 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYL 283 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHH
Confidence 45566666666555544 567889999987643 4667889999999999999999999999987532 24555
Q ss_pred HHHHHHHHHcc-------------------CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 044422 340 FLGVISSCRHG-------------------GLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-P 399 (519)
Q Consensus 340 ~~~ll~~~~~~-------------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 399 (519)
+..+..+|... +..+.|...++...+.. +.+...+..+...|...|++++|.+.|++. .
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 65555444321 23566777777777643 334556788999999999999999999875 3
Q ss_pred CCCCHHHHHHHHHhhhcCCCCchhHHHHHH-HHhccCCHHHHHHHHHHHHHCC
Q 044422 400 IYPNAVIWEAAESRLLLEPECAATHVQLAN-LYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 400 ~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~g~~~~A~~~~~~m~~~g 451 (519)
..|+...... .+..+.. .+...|++++|+..|++..+..
T Consensus 363 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~ 402 (472)
T 4g1t_A 363 KELTPVAKQL-------------LHLRYGNFQLYQMKCEDKAIHHFIEGVKIN 402 (472)
T ss_dssp SCCCHHHHHH-------------HHHHHHHHHHHTSSCHHHHHHHHHHHHHSC
T ss_pred cCCCChHHHH-------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3333322211 2223333 3457899999999999887643
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=3.8e-11 Score=116.05 Aligned_cols=243 Identities=9% Similarity=-0.006 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC-HHHHHHHHccCC---CCChhHHHHHHHH
Q 044422 135 ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRV-IIDAYKVFEEMP---VRNVVSWTAIIAA 210 (519)
Q Consensus 135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~---~~~~~~~~~li~~ 210 (519)
...|..+...+...|++++|...++.+++.. +-+..+|+.+..++...|+ +++|+..|++.. ..+...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4567777778888999999999999999875 4467789999999999996 999999999886 3567889999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-cCCHHH
Q 044422 211 FAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCK-CGNVEE 289 (519)
Q Consensus 211 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~ 289 (519)
+...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|...++.+.+.. +.+...|+.+..++.+ .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999998864 3467889999999999999999999999999876 5678889999999988 566466
Q ss_pred H-----HHHHHhcCC---CChhHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--------
Q 044422 290 A-----VYVFNNMHG---KDIVSWNSMIAGYAQHG--LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGG-------- 351 (519)
Q Consensus 290 a-----~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-------- 351 (519)
| +..|++..+ .+...|+.+...+...| ++++|.+.+.++ +. -+.+...+..+...+.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 6 466666543 36678888888888877 688898888887 32 3335667778888887764
Q ss_pred -CHHHHHHHHHHH-HHcCCCcC-HHHHHHHHHHHHH
Q 044422 352 -LVEEGKVYFDSM-AKHGLKPE-LDHYSCVVDLLGR 384 (519)
Q Consensus 352 -~~~~a~~~~~~m-~~~~~~p~-~~~~~~li~~~~~ 384 (519)
..++|..+++++ .+ +.|. ...|..+...+..
T Consensus 332 ~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 332 DILNKALELCEILAKE--KDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHH
Confidence 258899999988 55 3353 4456655555543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-11 Score=113.28 Aligned_cols=227 Identities=9% Similarity=-0.077 Sum_probs=152.2
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC--CCh----hHHHHHHH
Q 044422 136 SFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV--RNV----VSWTAIIA 209 (519)
Q Consensus 136 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~----~~~~~li~ 209 (519)
..+......+...|+++.|...++.+.+.. +.+..++..+..+|...|++++|+..|++... ++. .+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 334455566667777777777777777653 33445677777777777777777777776543 222 23677777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHH-HHHHhcCCHH
Q 044422 210 AFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLI-SMYCKCGNVE 288 (519)
Q Consensus 210 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~ 288 (519)
++...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+. ..|. .++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHHH
Confidence 7777788888888777776643 2345677777777777888888877777776653 44556666666 4443 44788
Q ss_pred HHHHHHHhcCC--C-ChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHccCCHHH
Q 044422 289 EAVYVFNNMHG--K-DIVSWNSMIAGYAQHGL---AVRAIDLFEEMMKQR-VKPD------AITFLGVISSCRHGGLVEE 355 (519)
Q Consensus 289 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~p~------~~t~~~ll~~~~~~g~~~~ 355 (519)
+|...|+...+ | +...+..+...+...|+ +++|...+++..+.. -.|+ ..+|..+...|...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 88887776653 2 45666667777777777 777777777766531 1223 2466677777888888888
Q ss_pred HHHHHHHHHHc
Q 044422 356 GKVYFDSMAKH 366 (519)
Q Consensus 356 a~~~~~~m~~~ 366 (519)
|...+++..+.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88888888874
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-11 Score=117.92 Aligned_cols=224 Identities=9% Similarity=0.003 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044422 170 VYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQ-VDMCLELYRMMRNSMLEPNDFTFTSILSA 245 (519)
Q Consensus 170 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 245 (519)
...|..+...+.+.|++++|+..|++.. ..+..+|+.+..++...|+ +++|+..|++..... +-+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 4578888889999999999999999886 3567889999999999997 999999999998864 3467889999999
Q ss_pred HHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHH-cCChHHH
Q 044422 246 CTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQ-HGLAVRA 321 (519)
Q Consensus 246 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~-~g~~~~A 321 (519)
+...|++++|...++.+.+.. +-+...|..+..++.+.|++++|+..|+++.+ .+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 999999999999999999986 66789999999999999999999999998874 367899999999999 6665777
Q ss_pred -----HHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcC--------
Q 044422 322 -----IDLFEEMMKQRVKPDAITFLGVISSCRHGG--LVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAG-------- 386 (519)
Q Consensus 322 -----~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-------- 386 (519)
+..+++..+... -+...|..+...+...| ++++|...+.++ +. -+.+...+..+...|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 588888877532 25678888888888888 689999999887 32 3446778888999998874
Q ss_pred -CHHHHHHHHHhC
Q 044422 387 -LLEEARDFIKQM 398 (519)
Q Consensus 387 -~~~~A~~~~~~~ 398 (519)
..++|.++++++
T Consensus 332 ~~~~~A~~~~~~l 344 (382)
T 2h6f_A 332 DILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 258888888766
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-11 Score=120.93 Aligned_cols=296 Identities=11% Similarity=-0.001 Sum_probs=213.3
Q ss_pred CCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCh----HHHHHHHHHHHHhCCCHHHHHHHHccCCC---------C
Q 044422 133 VDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIAN----VYVGSSLITLYSKCRVIIDAYKVFEEMPV---------R 199 (519)
Q Consensus 133 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~ 199 (519)
.....+......+...|+++.|...++.+.+.+ +.+ ..++..+...|...|++++|...|++... .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 455566677777888999999999999988874 222 35788888899999999999988877541 1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCC--------------------chH
Q 044422 200 NVVSWTAIIAAFAQEWQVDMCLELYRMMRNS----MLEP-NDFTFTSILSACTGSGA--------------------LGQ 254 (519)
Q Consensus 200 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~--------------------~~~ 254 (519)
...++..+...+...|++++|...+++.... +-.+ ...++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2457788888999999999999998877542 1111 13477888888889999 888
Q ss_pred HHHHHHHHHHc----CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHH
Q 044422 255 GRSAHCQTIRM----GFF-SYIQVANSLISMYCKCGNVEEAVYVFNNMHG-----KD----IVSWNSMIAGYAQHGLAVR 320 (519)
Q Consensus 255 a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~ 320 (519)
|...++...+. +.. ....++..+...|...|++++|...+++..+ ++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 88888776542 211 2245788889999999999999999987653 22 2378888999999999999
Q ss_pred HHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHHcCCHHH
Q 044422 321 AIDLFEEMMKQRV-KPD----AITFLGVISSCRHGGLVEEGKVYFDSMAKH----GLKP-ELDHYSCVVDLLGRAGLLEE 390 (519)
Q Consensus 321 A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~ 390 (519)
|...+++..+... .++ ..++..+...+...|++++|...+++..+. +-.+ ...++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999998765311 111 457788888999999999999999988742 2111 15577889999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHH
Q 044422 391 ARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWD 438 (519)
Q Consensus 391 A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~ 438 (519)
|.+.+++.- . +.+.....+....++..+...+...|+..
T Consensus 326 A~~~~~~al--------~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 326 AMHFAEKHL--------E-ISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHH--------H-HHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHH--------H-HHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 999988751 0 00000001112335566777777776653
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=6.9e-10 Score=113.09 Aligned_cols=359 Identities=8% Similarity=-0.011 Sum_probs=230.9
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHH
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLI 120 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 120 (519)
+.|++++|..+|+...... |+...|...+.-.....+.... ..+.+.
T Consensus 58 ~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~~------------------------------a~~~~~ 104 (530)
T 2ooe_A 58 KAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLPS------------------------------YKEKMA 104 (530)
T ss_dssp HTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTSTT------------------------------HHHHHH
T ss_pred hcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchhh------------------------------HHHHHH
Confidence 5689999999999987433 2344555544433221111110 112233
Q ss_pred HHHHHHhH-CCCCC-CHHHHHHHHHHHhc---------CCChhhHHHHHHHHHHhCCCChHHHHHHHHHHH---------
Q 044422 121 SMHHDLHR-ERLKV-DASFLSTAVTSCGS---------TRNIRGGAPYQCLAIRTGFIANVYVGSSLITLY--------- 180 (519)
Q Consensus 121 ~~~~~m~~-~g~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~--------- 180 (519)
.+|+.... .|..| +...|...+....+ .|+++.|..+|+..++....+....|.......
T Consensus 105 ~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~ 184 (530)
T 2ooe_A 105 QAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAK 184 (530)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHH
Confidence 45555433 23332 34455555544332 567777777777776622111123333222211
Q ss_pred ----HhCCCHHHHHHHHcc-------CC------CCC--------hhHHHHHHHHHHhc----CCh----HHHHHHHHHH
Q 044422 181 ----SKCRVIIDAYKVFEE-------MP------VRN--------VVSWTAIIAAFAQE----WQV----DMCLELYRMM 227 (519)
Q Consensus 181 ----~~~g~~~~A~~~~~~-------m~------~~~--------~~~~~~li~~~~~~----~~~----~~a~~~~~~m 227 (519)
.+.++++.|..++.. +. .|+ ...|...+...... ++. +++..+|++.
T Consensus 185 ~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a 264 (530)
T 2ooe_A 185 KMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264 (530)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH
Confidence 123456667665543 11 222 24555555433322 232 4778889888
Q ss_pred HHCCCCCCHHHHHHHHHHHHc-------cCCch-------HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 044422 228 RNSMLEPNDFTFTSILSACTG-------SGALG-------QGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYV 293 (519)
Q Consensus 228 ~~~g~~p~~~t~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 293 (519)
.... +-+...|......+.+ .|+++ +|..+++...+.-.+.+...+..++..+.+.|++++|..+
T Consensus 265 l~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~ 343 (530)
T 2ooe_A 265 LLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 343 (530)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence 7753 3466777777777765 79987 8999999988633355788999999999999999999999
Q ss_pred HHhcCC--C-Ch-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHcCC
Q 044422 294 FNNMHG--K-DI-VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISS-CRHGGLVEEGKVYFDSMAKHGL 368 (519)
Q Consensus 294 ~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~m~~~~~ 368 (519)
|+++.+ | +. ..|...+..+.+.|++++|..+|++..+.. +.+...|...... +...|+.++|..+|+...+..
T Consensus 344 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~- 421 (530)
T 2ooe_A 344 YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY- 421 (530)
T ss_dssp HHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-
T ss_pred HHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-
Confidence 998764 3 33 478888988999999999999999998753 2233333322222 346899999999999988743
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCc----hhHHHHHHHHhccCCHHHHHHHH
Q 044422 369 KPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECA----ATHVQLANLYAGVRCWDQAARVR 444 (519)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~~L~~~~~~~g~~~~A~~~~ 444 (519)
+-+...|..++..+.+.|+.++|..+|++. +...|.++ ..|...+......|+.+.+.+++
T Consensus 422 p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a---------------l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 422 GDIPEYVLAYIDYLSHLNEDNNTRVLFERV---------------LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp TTCHHHHHHHHHHHTTTTCHHHHHHHHHHH---------------HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCHhhHHHHHHHH---------------HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 336788999999999999999999999875 22222222 25555688888899999999999
Q ss_pred HHHHHC
Q 044422 445 KLMKDK 450 (519)
Q Consensus 445 ~~m~~~ 450 (519)
+++.+.
T Consensus 487 ~r~~~~ 492 (530)
T 2ooe_A 487 KRRFTA 492 (530)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.8e-12 Score=123.86 Aligned_cols=272 Identities=13% Similarity=0.017 Sum_probs=161.2
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChH----HHHHHHHHHHHhCCCHHHHHHHHccCCC---------CChhH
Q 044422 137 FLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANV----YVGSSLITLYSKCRVIIDAYKVFEEMPV---------RNVVS 203 (519)
Q Consensus 137 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~~~~~ 203 (519)
.+..+...+...|+++.|...++.+++.+- .+. .++..+...|...|++++|...|++... ....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344445555666667777766666666531 121 3455556666666666666665554421 11234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcC-CCCcHHHHHHHHHHHH
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMG-FFSYIQVANSLISMYC 282 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~ 282 (519)
+..+...|...|++++|...+++..... ...+ .+....++..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHH
Confidence 4445555555555555555554443210 0001 0112334444555555
Q ss_pred hcCC-----------------HHHHHHHHHhcCC-------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CC
Q 044422 283 KCGN-----------------VEEAVYVFNNMHG-------K--DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRV-KP 335 (519)
Q Consensus 283 ~~~~-----------------~~~a~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p 335 (519)
..|+ +++|.+.+++..+ + ...++..+...+...|++++|...+++..+... .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 5555555444321 1 224667777778888888888888877655311 11
Q ss_pred C----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC----CC-cCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHH
Q 044422 336 D----AITFLGVISSCRHGGLVEEGKVYFDSMAKHG----LK-PELDHYSCVVDLLGRAGLLEEARDFIKQMP-IYPNAV 405 (519)
Q Consensus 336 ~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~----~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~ 405 (519)
+ ..++..+...+...|++++|...+++..+.. .. ....++..+...|...|++++|...+++.- +.++
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-- 335 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE-- 335 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--
Confidence 2 2367778888999999999999998877421 11 124677888999999999999999998761 0000
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 406 IWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
....+....++..+..+|...|++++|...+++..+.
T Consensus 336 --------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 336 --------LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp --------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 0001112347778999999999999999999997654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-11 Score=119.03 Aligned_cols=258 Identities=9% Similarity=-0.017 Sum_probs=163.3
Q ss_pred ccCHHHHHHHHHHHhHCCCCCCH----HHHHHHHHHHhcCCChhhHHHHHHHHHHh----CC-CChHHHHHHHHHHHHhC
Q 044422 113 VVDVEKLISMHHDLHRERLKVDA----SFLSTAVTSCGSTRNIRGGAPYQCLAIRT----GF-IANVYVGSSLITLYSKC 183 (519)
Q Consensus 113 ~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~ 183 (519)
.+++++|+..|++..+.+.. +. ..+..+...+...|+++.|...++...+. +- +....++..+...|...
T Consensus 61 ~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 139 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM 139 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 34999999999999886422 33 46888888899999999999999988764 21 23456788999999999
Q ss_pred CCHHHHHHHHccCCC---------CChhHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHHC----CCC
Q 044422 184 RVIIDAYKVFEEMPV---------RNVVSWTAIIAAFAQEWQ-----------------VDMCLELYRMMRNS----MLE 233 (519)
Q Consensus 184 g~~~~A~~~~~~m~~---------~~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~m~~~----g~~ 233 (519)
|++++|...|++... ....++..+...|...|+ +++|+..+++.... +-.
T Consensus 140 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 219 (411)
T 4a1s_A 140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 999999999987642 123466677777777777 66666666554321 111
Q ss_pred C-CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHH
Q 044422 234 P-NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFF-SYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAG 311 (519)
Q Consensus 234 p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~ 311 (519)
+ ...++..+...+...|++++|...++...+..-. .+.. ....++..+...
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------~~~~~~~~la~~ 272 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA---------------------------AERRANSNLGNS 272 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH---------------------------HHHHHHHHHHHH
Confidence 1 1123444444445555555555444444332100 0000 001255566666
Q ss_pred HHHcCChHHHHHHHHHHHHCCC--C---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC-cCHHHHHHHHHH
Q 044422 312 YAQHGLAVRAIDLFEEMMKQRV--K---PDAITFLGVISSCRHGGLVEEGKVYFDSMAKH----GLK-PELDHYSCVVDL 381 (519)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~~~--~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~ 381 (519)
|...|++++|...+++..+... . ....++..+...+...|++++|...+++..+. +.. ....++..+...
T Consensus 273 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 352 (411)
T 4a1s_A 273 HIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNA 352 (411)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 6666777777666665544210 0 11345666777777788888888887776642 111 123466778888
Q ss_pred HHHcCCHHHHHHHHHhC
Q 044422 382 LGRAGLLEEARDFIKQM 398 (519)
Q Consensus 382 ~~~~g~~~~A~~~~~~~ 398 (519)
|...|++++|.+.+++.
T Consensus 353 ~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 353 HSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHH
Confidence 88888888888888765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.3e-11 Score=114.55 Aligned_cols=228 Identities=9% Similarity=0.050 Sum_probs=168.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCchHHHHHHHHHHHc--CC----CCcHHHHH
Q 044422 207 IIAAFAQEWQVDMCLELYRMMRNS----MLEP-NDFTFTSILSACTGSGALGQGRSAHCQTIRM--GF----FSYIQVAN 275 (519)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~----~~~~~~~~ 275 (519)
....+...|++++|...|++..+. +-.+ ...++..+...+...|+++.|...+....+. .. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455677788888888888887653 1112 2356777888888888888888888777653 11 11245778
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHG-----KD----IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ----RV-KPDAITFL 341 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~t~~ 341 (519)
.+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888889999999999888887653 11 247888889999999999999999988762 23 33466788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc----CCCcCHHHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 044422 342 GVISSCRHGGLVEEGKVYFDSMAKH----GLKPELDHYSCVVDLLGRAGL---LEEARDFIKQMPIYPNAVIWEAAESRL 414 (519)
Q Consensus 342 ~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~~~~~~~~~~~ 414 (519)
.+...+...|++++|...+++..+. +-+.....+..+...|...|+ +++|..++++.+..|+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~---------- 338 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADL---------- 338 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHH----------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHH----------
Confidence 8888999999999999999988742 212223345667788888888 88999999888533222
Q ss_pred hcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 415 LLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 415 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
..++..|...|...|++++|...+++..+.
T Consensus 339 ------~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 339 ------EDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 235556899999999999999999987654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.1e-11 Score=113.71 Aligned_cols=260 Identities=12% Similarity=0.015 Sum_probs=188.4
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHhCCCCh----HHHHHHHHHHHHhCCCHHHHHHHHccCCC---------CChhHH
Q 044422 138 LSTAVTSCGSTRNIRGGAPYQCLAIRTGFIAN----VYVGSSLITLYSKCRVIIDAYKVFEEMPV---------RNVVSW 204 (519)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~~~~~~ 204 (519)
+......+...|+++.|...++.+.+.. +.+ ..++..+...+...|++++|...+++... ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 4445556677888888888888888764 222 35677888888888888888888877541 124567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCC--------------------chHHHHHH
Q 044422 205 TAIIAAFAQEWQVDMCLELYRMMRNS----MLEP-NDFTFTSILSACTGSGA--------------------LGQGRSAH 259 (519)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~--------------------~~~a~~~~ 259 (519)
..+...+...|++++|...+++.... +-.+ ...++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 77888888888988888888776542 1111 13467778888888888 88888877
Q ss_pred HHHHHc----CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHH
Q 044422 260 CQTIRM----GF-FSYIQVANSLISMYCKCGNVEEAVYVFNNMHG-----KD----IVSWNSMIAGYAQHGLAVRAIDLF 325 (519)
Q Consensus 260 ~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~ 325 (519)
+...+. +. +....++..+...|...|++++|...+++..+ ++ ..++..+...+...|++++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 765532 21 12245778888889999999999998887653 12 237788888999999999999999
Q ss_pred HHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044422 326 EEMMKQRV-KPD----AITFLGVISSCRHGGLVEEGKVYFDSMAKH----GLK-PELDHYSCVVDLLGRAGLLEEARDFI 395 (519)
Q Consensus 326 ~~m~~~~~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~ 395 (519)
++..+... ..+ ..++..+...+...|++++|...+++..+. +-. ....++..+...|.+.|++++|...+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 88765311 111 456777888899999999999999988642 111 12446778899999999999999998
Q ss_pred HhC
Q 044422 396 KQM 398 (519)
Q Consensus 396 ~~~ 398 (519)
++.
T Consensus 327 ~~a 329 (338)
T 3ro2_A 327 EKH 329 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-11 Score=113.14 Aligned_cols=271 Identities=11% Similarity=-0.012 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCC--CC-C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHH
Q 044422 171 YVGSSLITLYSKCRVIIDAYKVFEEMP--VR-N----VVSWTAIIAAFAQEWQVDMCLELYRMMRNS----MLEP-NDFT 238 (519)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~~~~m~--~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~t 238 (519)
..+......+...|++++|...|++.. .| + ...|..+...+...|++++|...+++.... +-.| ...+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 345556778889999999999999875 23 3 357888999999999999999999887542 2222 2457
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHc----CCC-CcHHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 044422 239 FTSILSACTGSGALGQGRSAHCQTIRM----GFF-SYIQVANSLISMYCKCGN--------------------VEEAVYV 293 (519)
Q Consensus 239 ~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~--------------------~~~a~~~ 293 (519)
+..+...+...|++++|...++...+. +-. ....++..+...|...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 788889999999999999999887653 111 114488889999999999 9999988
Q ss_pred HHhcCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHH
Q 044422 294 FNNMHG-----K----DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRV-KPD----AITFLGVISSCRHGGLVEEGKVY 359 (519)
Q Consensus 294 ~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~~~~a~~~ 359 (519)
+++..+ + ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 877542 1 234778888999999999999999998765311 112 33678888889999999999999
Q ss_pred HHHHHHc----CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhc
Q 044422 360 FDSMAKH----GLKP-ELDHYSCVVDLLGRAGLLEEARDFIKQMP-IYPNAVIWEAAESRLLLEPECAATHVQLANLYAG 433 (519)
Q Consensus 360 ~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 433 (519)
+++..+. +..+ ...++..+...|...|++++|...+++.- ..++ ..-.+....++..+...|..
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~~la~~~~~ 315 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE----------LKDRIGEGRACWSLGNAYTA 315 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh----------cCCcHHHHHHHHHHHHHHHH
Confidence 9988742 1111 15567888999999999999999998761 0000 00001113467779999999
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 044422 434 VRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 434 ~g~~~~A~~~~~~m~~~g 451 (519)
.|++++|...+++..+..
T Consensus 316 ~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 316 LGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HTCHHHHHHHHHHHHHC-
T ss_pred cCChHHHHHHHHHHHHHH
Confidence 999999999999987653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-10 Score=107.72 Aligned_cols=179 Identities=12% Similarity=0.075 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHh
Q 044422 218 DMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQ-VANSLISMYCKCGNVEEAVYVFNN 296 (519)
Q Consensus 218 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~ 296 (519)
++|..+|++....-.+-+...|..++..+.+.|++++|..+|+.+.+.. +.+.. +|..++..+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4445555444432001123344444444444555555555555444421 11122 445555555555555555555554
Q ss_pred cCCC---ChhHHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCc-
Q 044422 297 MHGK---DIVSWNSMIAGYA-QHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHG-LKP- 370 (519)
Q Consensus 297 ~~~~---~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p- 370 (519)
..+. +...|........ ..|+.++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++..+.. +.|
T Consensus 160 a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 4331 1222222211111 1456666666666555432 1234555555555566666666666666665542 333
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 371 -ELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 371 -~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
....|..++..+.+.|+.++|..+++++
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2445555566666666666666655544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.8e-11 Score=117.53 Aligned_cols=271 Identities=11% Similarity=-0.010 Sum_probs=206.1
Q ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHccCC--CC-C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC
Q 044422 167 IANVYVGSSLITLYSKCRVIIDAYKVFEEMP--VR-N----VVSWTAIIAAFAQEWQVDMCLELYRMMRNS----MLEPN 235 (519)
Q Consensus 167 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~ 235 (519)
......+......+...|++++|...|++.. .| + ...|..+...+...|++++|...+++.... +-.|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3455567778888999999999999999875 23 3 357888999999999999999999886542 22222
Q ss_pred -HHHHHHHHHHHHccCCchHHHHHHHHHHHc----CCC-CcHHHHHHHHHHHHhcCC--------------------HHH
Q 044422 236 -DFTFTSILSACTGSGALGQGRSAHCQTIRM----GFF-SYIQVANSLISMYCKCGN--------------------VEE 289 (519)
Q Consensus 236 -~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~--------------------~~~ 289 (519)
..++..+...+...|++++|...++...+. +-. ....++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 457788889999999999999999887653 111 124588899999999999 999
Q ss_pred HHHHHHhcCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHccCCHHH
Q 044422 290 AVYVFNNMHG-----K----DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR-VKPD----AITFLGVISSCRHGGLVEE 355 (519)
Q Consensus 290 a~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~~t~~~ll~~~~~~g~~~~ 355 (519)
|...++...+ . ...++..+...+...|++++|...+++..+.. -.++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 9988876542 1 23578888899999999999999999876531 1122 3377888889999999999
Q ss_pred HHHHHHHHHHc----CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C---CCCHHHHHHHHHhhhcCCCCchhHHH
Q 044422 356 GKVYFDSMAKH----GLKP-ELDHYSCVVDLLGRAGLLEEARDFIKQMP-I---YPNAVIWEAAESRLLLEPECAATHVQ 426 (519)
Q Consensus 356 a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~---~p~~~~~~~~~~~~~~~~~~~~~~~~ 426 (519)
|...+++..+. +..+ ...++..+...|...|++++|...+++.- + .++. +....++..
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-------------~~~~~~~~~ 312 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR-------------IGEGRACWS 312 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc-------------HHHHHHHHH
Confidence 99999988742 2111 15577889999999999999999998751 0 0111 111346777
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHC
Q 044422 427 LANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 427 L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
+...|...|++++|...+++..+.
T Consensus 313 la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 313 LGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999986543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.4e-11 Score=119.84 Aligned_cols=210 Identities=12% Similarity=0.053 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCc-hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044422 217 VDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGAL-GQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFN 295 (519)
Q Consensus 217 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 295 (519)
+++++..+++..... +.+...+..+...+...|++ ++|...++...+.. +.+...|..+..+|.+.|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555544332 23556666666777777777 77777777666654 3446667777777777777777777777
Q ss_pred hcCC--CChhHHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--------CCHHHH
Q 044422 296 NMHG--KDIVSWNSMIAGYAQH---------GLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG--------GLVEEG 356 (519)
Q Consensus 296 ~~~~--~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~--------g~~~~a 356 (519)
+..+ |+...+..+...+... |++++|...+++..+.. +-+...|..+..++... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 6543 4556666666667776 77777777777776653 22456677777777776 777888
Q ss_pred HHHHHHHHHcCCC---cCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhc
Q 044422 357 KVYFDSMAKHGLK---PELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAG 433 (519)
Q Consensus 357 ~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 433 (519)
...|++..+.. + -+...|..+..+|...|++++|.+.|++. ++++|.++.++..+..++..
T Consensus 241 ~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------l~l~p~~~~a~~~l~~~~~~ 304 (474)
T 4abn_A 241 LSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQA---------------AALDPAWPEPQQREQQLLEF 304 (474)
T ss_dssp HHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHH
Confidence 88877777642 1 26667777777788888888877766543 45666777777777777777
Q ss_pred cCCHHHHHHHHH
Q 044422 434 VRCWDQAARVRK 445 (519)
Q Consensus 434 ~g~~~~A~~~~~ 445 (519)
.|++++|++.++
T Consensus 305 lg~~~eAi~~~~ 316 (474)
T 4abn_A 305 LSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 777777776543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-10 Score=98.98 Aligned_cols=164 Identities=12% Similarity=0.088 Sum_probs=131.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044422 270 YIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISS 346 (519)
Q Consensus 270 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 346 (519)
+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|...+........ -+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 566778888888888888888888887653 3567788888888888999999888888876533 255667777777
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHH
Q 044422 347 CRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQ 426 (519)
Q Consensus 347 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 426 (519)
+...++++.+...+.+..+.. +-+...+..+...|.+.|++++|.+.|++. ++++|.++.+|..
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~---------------l~~~p~~~~~~~~ 146 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKT---------------ISIKPGFIRAYQS 146 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHH---------------HHhcchhhhHHHH
Confidence 888899999999998888753 345777888889999999999999877643 5678888888999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHC
Q 044422 427 LANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 427 L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
++.+|.+.|++++|++.|++..+.
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhC
Confidence 999999999999999999988764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.2e-11 Score=112.56 Aligned_cols=234 Identities=11% Similarity=0.091 Sum_probs=128.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc------C-C
Q 044422 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNS-------MLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRM------G-F 267 (519)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~ 267 (519)
.++..+...+...|++++|..+|+++.+. ..+.....+..+...+...|++++|...++...+. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555555555556666655555555441 11222344555555666666666666666555443 1 1
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----------C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-----
Q 044422 268 FSYIQVANSLISMYCKCGNVEEAVYVFNNMHG----------K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ----- 331 (519)
Q Consensus 268 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 331 (519)
+....++..+...|...|++++|...|++..+ + ....+..+...+...|++++|..+++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 22344556666666666666666666655432 1 2345666777777777777777777776653
Q ss_pred -CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHc-------CCCcCHHH-------HHHHHHHHHHcCCHHHHHHHH
Q 044422 332 -RVKPD-AITFLGVISSCRHGGLVEEGKVYFDSMAKH-------GLKPELDH-------YSCVVDLLGRAGLLEEARDFI 395 (519)
Q Consensus 332 -~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~~~-------~~~li~~~~~~g~~~~A~~~~ 395 (519)
+..|+ ..++..+...+...|++++|...++++.+. ...+.... +..+...+...+.+.+|...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 11222 345667777788888888888888877642 11111111 111122222223333333333
Q ss_pred HhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 396 KQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 396 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
+.. ....|....++..++.+|.+.|++++|.+.+++..+.
T Consensus 268 ~~~---------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 268 KAC---------------KVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhc---------------CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 332 2334555667888999999999999999999987653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-09 Score=94.18 Aligned_cols=161 Identities=12% Similarity=0.070 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 044422 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMY 281 (519)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (519)
..|..+...|.+.|++++|+..|++..+.. +-+..++..+..++.+.|++++|...+....... +.+...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 344445555555555555555555544432 1233444444555555555555555554444432 22334444444444
Q ss_pred HhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 044422 282 CKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKV 358 (519)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 358 (519)
...++++.|...+....+ .+...+..+...+.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|..
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHH
Confidence 445555555544443321 233444445555555555555555555554432 1234445555555555555555555
Q ss_pred HHHHHHH
Q 044422 359 YFDSMAK 365 (519)
Q Consensus 359 ~~~~m~~ 365 (519)
.|++..+
T Consensus 163 ~~~~al~ 169 (184)
T 3vtx_A 163 YFKKALE 169 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.1e-11 Score=111.94 Aligned_cols=166 Identities=12% Similarity=0.103 Sum_probs=113.7
Q ss_pred CCHHHHHHHHHHHhcCCChhhHHHHHHHHHHh-------CCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC-------
Q 044422 133 VDASFLSTAVTSCGSTRNIRGGAPYQCLAIRT-------GFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV------- 198 (519)
Q Consensus 133 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------- 198 (519)
.+..++..+...+...|+++.|..+++.+.+. ..+....++..+...|...|++++|...+++...
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 35567788888888999999999999888774 2233456788888888888888888888876641
Q ss_pred ----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHccCCchHHHHHHHHHHHc--
Q 044422 199 ----RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNS------MLEP-NDFTFTSILSACTGSGALGQGRSAHCQTIRM-- 265 (519)
Q Consensus 199 ----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-- 265 (519)
....++..+...|...|++++|...|++..+. +-.| ....+..+...+...|++++|...++.+.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 12346677777788888888888888777543 2222 3345666777777777777777777776654
Q ss_pred ----CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 266 ----GF-FSYIQVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 266 ----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
+. +....++..+...|...|++++|...++++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 2223456666666666666666666666544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.23 E-value=4.8e-09 Score=98.69 Aligned_cols=211 Identities=9% Similarity=-0.049 Sum_probs=158.1
Q ss_pred hhHHHHHHHHHHhCCCChHHHHHHHHHHHH-------hCCCH-------HHHHHHHccCCC---C-ChhHHHHHHHHHHh
Q 044422 152 RGGAPYQCLAIRTGFIANVYVGSSLITLYS-------KCRVI-------IDAYKVFEEMPV---R-NVVSWTAIIAAFAQ 213 (519)
Q Consensus 152 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~---~-~~~~~~~li~~~~~ 213 (519)
++|..+|+.+++.. +-+...|..++..+. +.|++ ++|..+|++... | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777653 446667777766665 35775 788888877542 3 45578888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-hcCCHHHH
Q 044422 214 EWQVDMCLELYRMMRNSMLEPN-DF-TFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYC-KCGNVEEA 290 (519)
Q Consensus 214 ~~~~~~a~~~~~~m~~~g~~p~-~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a 290 (519)
.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+...+.. +.+...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888774 443 33 78888888888888888888888888764 344555554433322 36899999
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 291 VYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR-VKP--DAITFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 291 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
..+|+...+ .+...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999987754 366788888899999999999999999998863 455 35678888888888999999999999988
Q ss_pred Hc
Q 044422 365 KH 366 (519)
Q Consensus 365 ~~ 366 (519)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=6.4e-09 Score=100.92 Aligned_cols=226 Identities=10% Similarity=0.053 Sum_probs=160.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHccCCchHHHHHHHHHHHc----CC-C-CcHHHHH
Q 044422 207 IIAAFAQEWQVDMCLELYRMMRNSML-EP----NDFTFTSILSACTGSGALGQGRSAHCQTIRM----GF-F-SYIQVAN 275 (519)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~m~~~g~-~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~-~~~~~~~ 275 (519)
....+...|++++|+..|++..+.-. .+ ...++..+...+...|+++.|...+....+. +- . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456778888888888888765310 12 2356777788888888888888888776643 11 1 1245777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHG-----KD----IVSWNSMIAGYAQHGLAVRAIDLFEEMMK-----QRVKPDAITFL 341 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~t~~ 341 (519)
.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|...+++..+ .... ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 888888888888888888876543 12 34677888888999999999999988776 3322 366778
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc----CCCcCHHHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 044422 342 GVISSCRHGGLVEEGKVYFDSMAKH----GLKPELDHYSCVVDLLGRAGL---LEEARDFIKQMPIYPNAVIWEAAESRL 414 (519)
Q Consensus 342 ~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~~~~~~~~~~~ 414 (519)
.+...+.+.|++++|...+++..+. +-+.....+..+...|...|+ +.+|..++++.+..|+.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~---------- 335 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYI---------- 335 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHH----------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHH----------
Confidence 8888899999999999999988753 222223445666666777777 88888888876432222
Q ss_pred hcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 415 LLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 415 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
...+..|+..|...|++++|...|++..+
T Consensus 336 ------~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 336 ------EACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12455689999999999999999988754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-09 Score=106.83 Aligned_cols=303 Identities=10% Similarity=0.017 Sum_probs=179.9
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCC-----ChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHH-
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTR-----NIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIID- 188 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~- 188 (519)
+.++|+..|++..+. ++..+..+...+...+ ++++|...|....+.|.. ..+..|...|...+..+.
T Consensus 53 d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~ 125 (452)
T 3e4b_A 53 QIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPN 125 (452)
T ss_dssp ----------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTT
T ss_pred CHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCC
Confidence 447788888777653 4444555555333333 667788888888776632 256666666666554333
Q ss_pred --HHHHHccCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccC---CchHHHHHHH
Q 044422 189 --AYKVFEEMP-VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNS--MLEPNDFTFTSILSACTGSG---ALGQGRSAHC 260 (519)
Q Consensus 189 --A~~~~~~m~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~ 260 (519)
+.+.+.... ..++..+..+...|...+.++++........+. ...|+ .+..|...|...| +.++|...|+
T Consensus 126 ~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~ 203 (452)
T 3e4b_A 126 VNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI--CYVELATVYQKKQQPEQQAELLKQME 203 (452)
T ss_dssp CCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 333333322 245667777777777777554444433222221 11333 6667777777788 7788888888
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhc----CCHHHHHHHHHhcCCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCC
Q 044422 261 QTIRMGFFSYIQVANSLISMYCKC----GNVEEAVYVFNNMHGKDIVSWNSMIAG-Y--AQHGLAVRAIDLFEEMMKQRV 333 (519)
Q Consensus 261 ~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~ 333 (519)
...+.| +++...+..+...|... +++++|...|+.....++..+..+... + ...+++++|...|++..+.|
T Consensus 204 ~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g- 281 (452)
T 3e4b_A 204 AGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD- 281 (452)
T ss_dssp HHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-
T ss_pred HHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-
Confidence 887777 55555556666666554 678888888887773355666666666 3 45788888888888888776
Q ss_pred CCCHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCH
Q 044422 334 KPDAITFLGVISSCRHGG-----LVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGR----AGLLEEARDFIKQMPIYPNA 404 (519)
Q Consensus 334 ~p~~~t~~~ll~~~~~~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~ 404 (519)
+...+..|-..|. .| ++++|...|++.. . -+...+..|...|.. ..++++|...|++.-
T Consensus 282 --~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa----- 349 (452)
T 3e4b_A 282 --QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAA----- 349 (452)
T ss_dssp --CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHH-----
T ss_pred --CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH-----
Confidence 4555566665555 44 8888888888877 3 355666666666665 337888888877551
Q ss_pred HHHHHHHHhhhcCCCCchhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCC
Q 044422 405 VIWEAAESRLLLEPECAATHVQLANLYAG----VRCWDQAARVRKLMKDKGL 452 (519)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~m~~~g~ 452 (519)
++.++.+...|...|.. .+++++|...|+...+.|.
T Consensus 350 ------------~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 350 ------------RNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp ------------TTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred ------------hhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 12334455556776664 4578888888888777764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-09 Score=104.51 Aligned_cols=281 Identities=9% Similarity=-0.057 Sum_probs=197.8
Q ss_pred CHHHHHHHHHHHhHC--CCCCCHH--HHHHHHHHH--hcCCChhhHH-----------HHHHHHHHhCCCChH----HHH
Q 044422 115 DVEKLISMHHDLHRE--RLKVDAS--FLSTAVTSC--GSTRNIRGGA-----------PYQCLAIRTGFIANV----YVG 173 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~--g~~p~~~--~~~~ll~~~--~~~~~~~~a~-----------~~~~~~~~~g~~~~~----~~~ 173 (519)
++++|..++++..+. .+..|.. .|-.++..- ...+++..+. +.++.+.......+. ..+
T Consensus 27 ~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 106 (383)
T 3ulq_A 27 SIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFN 106 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHHHHHH
Confidence 899999999988653 2323433 333343331 1223344444 666666543211111 112
Q ss_pred HHHHHHHHhCCCHHHHHHHHccCCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CC-CHHH
Q 044422 174 SSLITLYSKCRVIIDAYKVFEEMPV-----R----NVVSWTAIIAAFAQEWQVDMCLELYRMMRNS----ML-EP-NDFT 238 (519)
Q Consensus 174 ~~li~~~~~~g~~~~A~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p-~~~t 238 (519)
-.....+...|++++|...|++... + ...+|..+..+|...|++++|...+++..+. +- .+ ...+
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 2356677889999999999988753 2 2457889999999999999999999887652 11 11 2457
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHc----CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhH
Q 044422 239 FTSILSACTGSGALGQGRSAHCQTIRM----GFF-SYIQVANSLISMYCKCGNVEEAVYVFNNMHG-----KD----IVS 304 (519)
Q Consensus 239 ~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~ 304 (519)
+..+..+|...|++++|...++...+. +-. ....++..+...|...|++++|...|++..+ .+ ..+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 888899999999999999999887754 211 1235888999999999999999999987654 22 357
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCc-CHHHHH
Q 044422 305 WNSMIAGYAQHGLAVRAIDLFEEMMKQR----VKPDAITFLGVISSCRHGGL---VEEGKVYFDSMAKHGLKP-ELDHYS 376 (519)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~p-~~~~~~ 376 (519)
+..+...+.+.|++++|...+++..+.. -+.....+..+...+...|+ +++|..++++. +..| ....+.
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~ 343 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHH
Confidence 8889999999999999999999876531 11122335667778888898 66666666655 3333 344677
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC
Q 044422 377 CVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~~ 398 (519)
.+...|...|++++|.+.+++.
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 8999999999999999999865
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.5e-10 Score=113.27 Aligned_cols=191 Identities=6% Similarity=-0.121 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHHHhCCCH-HHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044422 169 NVYVGSSLITLYSKCRVI-IDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILS 244 (519)
Q Consensus 169 ~~~~~~~li~~~~~~g~~-~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 244 (519)
+...+..+...+...|++ ++|++.|++.. +.+...|..+..+|.+.|++++|...|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 445555555555555665 66655555543 233556666666666666666666666666654 355566666666
Q ss_pred HHHcc---------CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc--------CCHHHHHHHHHhcCC--C----C
Q 044422 245 ACTGS---------GALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC--------GNVEEAVYVFNNMHG--K----D 301 (519)
Q Consensus 245 ~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~a~~~~~~~~~--~----~ 301 (519)
.+... |++++|...++...+.. +.+...|..+..+|... |++++|...|++..+ | +
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 66666 77777777777766654 44566667777777666 677777777776543 3 5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 044422 302 IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSM 363 (519)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 363 (519)
...|..+..+|...|++++|...|++..+.. +-+...+..+...+...|++++|...+..+
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5677777777778888888888887776643 224556667777777777777777766554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.19 E-value=1e-09 Score=109.19 Aligned_cols=302 Identities=11% Similarity=-0.039 Sum_probs=170.7
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCCh---hhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-----CH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNI---RGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR-----VI 186 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-----~~ 186 (519)
++++|++.|+...+.| +...+..+...+...|+. ++|...|....+. +...+..|...+...+ ++
T Consensus 18 ~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 18 DTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCH
Confidence 6777888887777665 233334444445556666 7777777776643 4455555555444444 66
Q ss_pred HHHHHHHccCCC-CChhHHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHH
Q 044422 187 IDAYKVFEEMPV-RNVVSWTAIIAAFAQEWQVDM---CLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQT 262 (519)
Q Consensus 187 ~~A~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 262 (519)
++|...|++... .+...+..|...|...+..++ +.+.+......|. ......|...|...+.++.+......+
T Consensus 91 ~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 91 HEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 777777776653 344566677777766655333 3444444444332 234445666666666555544443333
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHhcCC---CChhHHHHHHHHHHHc----CChHHHHHHHHHHHHCC
Q 044422 263 IRMGFFSYIQVANSLISMYCKCG---NVEEAVYVFNNMHG---KDIVSWNSMIAGYAQH----GLAVRAIDLFEEMMKQR 332 (519)
Q Consensus 263 ~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~ 332 (519)
.+.-...+...+..|...|.+.| +.++|.+.|+...+ ++...+..+...|... +++++|...|++.. .|
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g 246 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG 246 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC
Confidence 22212223336777777777788 77788887776543 2333335566666444 57888888888776 32
Q ss_pred CCCCHHHHHHHHHH-H--HccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcC-----CHHHHHHHHHhCCCCCCH
Q 044422 333 VKPDAITFLGVISS-C--RHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAG-----LLEEARDFIKQMPIYPNA 404 (519)
Q Consensus 333 ~~p~~~t~~~ll~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~p~~ 404 (519)
+...+..|-.. + ...+++++|...|++..+.| +...+..|...|. .| ++++|.+.|++.-
T Consensus 247 ---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----- 314 (452)
T 3e4b_A 247 ---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----- 314 (452)
T ss_dssp ---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----
T ss_pred ---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----
Confidence 33444444444 3 45778888888888887766 5556666666666 44 7888888877663
Q ss_pred HHHHHHHHhhhcCCCCchhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCC
Q 044422 405 VIWEAAESRLLLEPECAATHVQLANLYAG----VRCWDQAARVRKLMKDKGL 452 (519)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~m~~~g~ 452 (519)
+.++.++..|...|.. ..++++|...|++..+.|.
T Consensus 315 -------------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 315 -------------GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp -------------TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred -------------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 4455566777888876 4599999999999888774
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.8e-09 Score=90.55 Aligned_cols=164 Identities=15% Similarity=0.069 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044422 271 IQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSC 347 (519)
Q Consensus 271 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 347 (519)
...+..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45677788888899999999999998875 356788888899999999999999999988763 33677888888899
Q ss_pred HccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHH
Q 044422 348 RHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQL 427 (519)
Q Consensus 348 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L 427 (519)
...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++ +...|.++.++..+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~---------------~~~~~~~~~~~~~l 150 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIA---------------LGLRPNEGKVHRAI 150 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHH---------------HhcCccchHHHHHH
Confidence 99999999999999988753 456778888999999999999999988765 34557777788889
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCC
Q 044422 428 ANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
+..|...|++++|.+.+++..+..
T Consensus 151 a~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 151 AFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999987653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.14 E-value=5.1e-09 Score=89.73 Aligned_cols=157 Identities=15% Similarity=0.002 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044422 171 YVGSSLITLYSKCRVIIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACT 247 (519)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 247 (519)
..+..+...+...|++++|...|+++.. .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4566666777777777777777777753 345567777777777777777777777776543 334556666666666
Q ss_pred ccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 044422 248 GSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDL 324 (519)
Q Consensus 248 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 324 (519)
..|++++|...++.+.+.. +.+...+..+...+...|++++|...++...+ .+...+..+...+...|++++|...
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777776666553 33445555555555555555555555554332 2334444444555555555555555
Q ss_pred HHHHH
Q 044422 325 FEEMM 329 (519)
Q Consensus 325 ~~~m~ 329 (519)
+++..
T Consensus 167 ~~~~~ 171 (186)
T 3as5_A 167 FKKAN 171 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-09 Score=113.34 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=113.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044422 270 YIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISS 346 (519)
Q Consensus 270 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 346 (519)
+...|+.|...|.+.|++++|++.|++..+ .+..+|+.+..+|.+.|++++|...|++..+... -+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 355666677777777777777777766543 2456677777777777777777777777766421 145667777777
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHH
Q 044422 347 CRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQ 426 (519)
Q Consensus 347 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 426 (519)
+...|++++|.+.|++..+.. +-+...|..+..+|...|++++|.+.|++ +++++|+++.+|..
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~---------------Al~l~P~~~~a~~~ 150 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRT---------------ALKLKPDFPDAYCN 150 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------HHHHCSCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH---------------HHHhCCCChHHHhh
Confidence 777788888888777777643 22456777778888888888888776653 45677777778888
Q ss_pred HHHHHhccCCHHHHHHHHHHHH
Q 044422 427 LANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 427 L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
|+.+|...|++++|.+.+++..
T Consensus 151 L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 151 LAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHH
T ss_pred hhhHHHhcccHHHHHHHHHHHH
Confidence 8888888888888877777654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.12 E-value=3.6e-08 Score=95.33 Aligned_cols=257 Identities=12% Similarity=0.051 Sum_probs=166.5
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhCCCChH----HHHHHHHHHHHhCCCHHHHHHHHccCCC-----CCh----hHHHHHH
Q 044422 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANV----YVGSSLITLYSKCRVIIDAYKVFEEMPV-----RNV----VSWTAII 208 (519)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~----~~~~~li 208 (519)
...+...|+++.|...++...+..-..+. .+++.+...+...|++++|...+++... .+. .+++.+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 33455678888888888777665311121 2456666777778888888887776641 222 2356667
Q ss_pred HHHHhcCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCC----CcHHHHHHH
Q 044422 209 AAFAQEWQVDMCLELYRMMRNS----MLE--P-NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFF----SYIQVANSL 277 (519)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~m~~~----g~~--p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l 277 (519)
..+...|++++|...+++.... +.. | ....+..+...+...|++++|...++...+..-. ....++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 7788888888888888776542 222 3 2345566777788888888888888877654211 124567777
Q ss_pred HHHHHhcCCHHHHHHHHHhcC----CCCh-hHHH-----HHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHH
Q 044422 278 ISMYCKCGNVEEAVYVFNNMH----GKDI-VSWN-----SMIAGYAQHGLAVRAIDLFEEMMKQRVKP---DAITFLGVI 344 (519)
Q Consensus 278 i~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~t~~~ll 344 (519)
...+...|++++|...+++.. .++. ..+. ..+..+...|++++|...+++.......+ ....+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 788888888888888887653 2221 1222 22344668888888888888775533211 123456667
Q ss_pred HHHHccCCHHHHHHHHHHHHH----cCCCcCH-HHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 345 SSCRHGGLVEEGKVYFDSMAK----HGLKPEL-DHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 345 ~~~~~~g~~~~a~~~~~~m~~----~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
..+...|++++|...++...+ .|..++. ..+..+..++...|+.++|...+++.
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 778888899888888887753 2322233 25666777888889999988888765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.6e-08 Score=93.74 Aligned_cols=281 Identities=9% Similarity=-0.002 Sum_probs=193.9
Q ss_pred CHHHHHHHHHHHhHC--CCCCCH--HHHHHHHHHH--hcCCChhhHH---------HHHHHHHHhCCCChH----HHHHH
Q 044422 115 DVEKLISMHHDLHRE--RLKVDA--SFLSTAVTSC--GSTRNIRGGA---------PYQCLAIRTGFIANV----YVGSS 175 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~--g~~p~~--~~~~~ll~~~--~~~~~~~~a~---------~~~~~~~~~g~~~~~----~~~~~ 175 (519)
++++|..++++..+. .+..|. ..|-.++..- .-.+....+. ..++.+.....+.+. ..+-.
T Consensus 27 ~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~~ 106 (378)
T 3q15_A 27 SVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFF 106 (378)
T ss_dssp CHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHHHHHH
Confidence 889999999887552 222233 3334443331 1112333333 666665432211111 12334
Q ss_pred HHHHHHhCCCHHHHHHHHccCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCC-CHHHHH
Q 044422 176 LITLYSKCRVIIDAYKVFEEMPV-----RN----VVSWTAIIAAFAQEWQVDMCLELYRMMRNS----M-LEP-NDFTFT 240 (519)
Q Consensus 176 li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g-~~p-~~~t~~ 240 (519)
....+...|++++|...|++... ++ ..++..+..+|...|+++.|...+++..+. + ..+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 45567789999999999988652 22 457888999999999999999999887642 1 111 245788
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHc----CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C---ChhHHHH
Q 044422 241 SILSACTGSGALGQGRSAHCQTIRM----GFF-SYIQVANSLISMYCKCGNVEEAVYVFNNMHG-----K---DIVSWNS 307 (519)
Q Consensus 241 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~---~~~~~~~ 307 (519)
.+..+|...|++++|...++...+. +-. ....++..+..+|...|++++|.+.|++..+ . ...++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8999999999999999999887653 211 1245788999999999999999999987764 2 2457788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCcC-HHHHHHHH
Q 044422 308 MIAGYAQHGLAVRAIDLFEEMMKQRV---KPD-AITFLGVISSCRHGGL---VEEGKVYFDSMAKHGLKPE-LDHYSCVV 379 (519)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m~~~~~---~p~-~~t~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li 379 (519)
+...+.+.|++++|...+++..+... .|. ...+..+...+...++ +++|...++. .+..|+ ...+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHH
Confidence 88999999999999999999877421 122 3455666666777888 6666666665 333333 34567789
Q ss_pred HHHHHcCCHHHHHHHHHhC
Q 044422 380 DLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~~ 398 (519)
..|...|++++|.+.+++.
T Consensus 344 ~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999865
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-07 Score=92.08 Aligned_cols=251 Identities=9% Similarity=-0.041 Sum_probs=183.5
Q ss_pred CHHHHHHHHHHHhHCCCCCCHH----HHHHHHHHHhcCCChhhHHHHHHHHHHhC--C-CC--hHHHHHHHHHHHHhCCC
Q 044422 115 DVEKLISMHHDLHRERLKVDAS----FLSTAVTSCGSTRNIRGGAPYQCLAIRTG--F-IA--NVYVGSSLITLYSKCRV 185 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~-~~--~~~~~~~li~~~~~~g~ 185 (519)
++++|...++.........+.. .++.+...+...|+++.|...+....+.. . .+ ...++..+...+...|+
T Consensus 29 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~ 108 (373)
T 1hz4_A 29 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 108 (373)
T ss_dssp CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCC
Confidence 8999999999987754222332 45566677888999999999999887532 1 11 12346778888999999
Q ss_pred HHHHHHHHccCCC----------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHccC
Q 044422 186 IIDAYKVFEEMPV----------R-NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLE----PNDFTFTSILSACTGSG 250 (519)
Q Consensus 186 ~~~A~~~~~~m~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~g 250 (519)
+++|...+++... + ....+..+...+...|++++|...+++....... ....++..+...+...|
T Consensus 109 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g 188 (373)
T 1hz4_A 109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARG 188 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcC
Confidence 9999999887641 1 1235667888999999999999999988653211 12457788888999999
Q ss_pred CchHHHHHHHHHHHcCCCCc--HHHHH----HHHHHHHhcCCHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHcCC
Q 044422 251 ALGQGRSAHCQTIRMGFFSY--IQVAN----SLISMYCKCGNVEEAVYVFNNMHGKD-------IVSWNSMIAGYAQHGL 317 (519)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~g~ 317 (519)
++++|...++......-.++ ..... ..+..+...|++++|...++....++ ...+..+...+...|+
T Consensus 189 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 268 (373)
T 1hz4_A 189 DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE 268 (373)
T ss_dssp CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCC
Confidence 99999999998875421111 11111 34455889999999999999887642 1246677888999999
Q ss_pred hHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 318 AVRAIDLFEEMMKQ----RVKPDA-ITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 318 ~~~A~~~~~~m~~~----~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
+++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 269 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 269 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999887543 222222 2566667788899999999999998764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-09 Score=100.15 Aligned_cols=200 Identities=12% Similarity=0.083 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHc------CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C-
Q 044422 236 DFTFTSILSACTGSGALGQGRSAHCQTIRM------GF-FSYIQVANSLISMYCKCGNVEEAVYVFNNMHG-------K- 300 (519)
Q Consensus 236 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~- 300 (519)
..++..+...+...|++++|...++.+.+. +- +....++..+...|...|++++|...|.+..+ +
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555555555556666665555555433 11 12244555566666666666666665554431 1
Q ss_pred ---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----
Q 044422 301 ---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ------RVKP-DAITFLGVISSCRHGGLVEEGKVYFDSMAKH---- 366 (519)
Q Consensus 301 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---- 366 (519)
...++..+...|...|++++|...+++..+. +-.| ...++..+...+...|++++|...+++..+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 2345666777777777777777777776653 1122 2456777778888888888888888877642
Q ss_pred ---CCCcC-HHHHHHHHHHHHHcCC------HHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCC
Q 044422 367 ---GLKPE-LDHYSCVVDLLGRAGL------LEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRC 436 (519)
Q Consensus 367 ---~~~p~-~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~ 436 (519)
...+. ...+..+...+...+. +..+...++... ...|....++..|+.+|...|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~la~~~~~~g~ 267 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK---------------VDSPTVNTTLRSLGALYRRQGK 267 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC---------------CCCHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC---------------CCCHHHHHHHHHHHHHHHHcCC
Confidence 11222 2223333333322222 233333333332 1122334577789999999999
Q ss_pred HHHHHHHHHHHHHC
Q 044422 437 WDQAARVRKLMKDK 450 (519)
Q Consensus 437 ~~~A~~~~~~m~~~ 450 (519)
+++|..++++..+.
T Consensus 268 ~~~A~~~~~~al~~ 281 (283)
T 3edt_B 268 LEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=7.7e-09 Score=108.00 Aligned_cols=158 Identities=8% Similarity=0.060 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044422 170 VYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSAC 246 (519)
Q Consensus 170 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 246 (519)
..+|+.|...|.+.|++++|++.|++.. ..+..+|+.+..+|.+.|++++|+..|++..+.. +-+...|..+..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455555555555555555555555543 2234455555556666666666666665555432 12345555566666
Q ss_pred HccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHH
Q 044422 247 TGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAID 323 (519)
Q Consensus 247 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 323 (519)
...|++++|.+.|++..+.. +.+...|+.+..+|.+.|++++|++.|++..+ .+...|..+..++...|++++|.+
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence 66666666666666555543 33455566666666666666666666665432 244556666666666666666665
Q ss_pred HHHHHH
Q 044422 324 LFEEMM 329 (519)
Q Consensus 324 ~~~~m~ 329 (519)
.+++..
T Consensus 167 ~~~kal 172 (723)
T 4gyw_A 167 RMKKLV 172 (723)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.99 E-value=3.6e-09 Score=97.53 Aligned_cols=216 Identities=10% Similarity=-0.040 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHh------CCCC-hHHHHHHHHHHHHhCCCHHH
Q 044422 116 VEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRT------GFIA-NVYVGSSLITLYSKCRVIID 188 (519)
Q Consensus 116 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~~~~li~~~~~~g~~~~ 188 (519)
+++|+++++.......+....++..+...+...|+++.|...++.+.+. +-.| ...++..+...|...|++++
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 103 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 103 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHH
Confidence 4555555555543333445678888999999999999999999998865 3233 45689999999999999999
Q ss_pred HHHHHccCCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHccC
Q 044422 189 AYKVFEEMPV-------R----NVVSWTAIIAAFAQEWQVDMCLELYRMMRNS------MLEP-NDFTFTSILSACTGSG 250 (519)
Q Consensus 189 A~~~~~~m~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g 250 (519)
|...|++... + ...+|..+...|...|++++|...|++..+. +-.| ...++..+...+...|
T Consensus 104 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 104 AEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 9999988752 1 2457888999999999999999999998764 1133 3567888999999999
Q ss_pred CchHHHHHHHHHHHc-------CCCC-cHHHHHHHHHHHHhcC------CHHHHHHHHHhcCCC---ChhHHHHHHHHHH
Q 044422 251 ALGQGRSAHCQTIRM-------GFFS-YIQVANSLISMYCKCG------NVEEAVYVFNNMHGK---DIVSWNSMIAGYA 313 (519)
Q Consensus 251 ~~~~a~~~~~~~~~~-------~~~~-~~~~~~~li~~~~~~~------~~~~a~~~~~~~~~~---~~~~~~~li~~~~ 313 (519)
++++|...++...+. ...+ ....+..+...+...+ .+..+...++..... ...++..+...|.
T Consensus 184 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 263 (283)
T 3edt_B 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYR 263 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999988764 1112 2223333333333322 244455555554432 3457888999999
Q ss_pred HcCChHHHHHHHHHHHHC
Q 044422 314 QHGLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 314 ~~g~~~~A~~~~~~m~~~ 331 (519)
..|++++|..++++..+.
T Consensus 264 ~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 264 RQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999987653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.9e-08 Score=87.85 Aligned_cols=206 Identities=8% Similarity=0.035 Sum_probs=147.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHH
Q 044422 199 RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLI 278 (519)
Q Consensus 199 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 278 (519)
.|+..|......+...|++++|+..|++..+...+++...+..+..++...|++++|...++...+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45677888888999999999999999998886643677777778899999999999999999988865 45677888999
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--C-Ch-------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 044422 279 SMYCKCGNVEEAVYVFNNMHG--K-DI-------VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD---AITFLGVIS 345 (519)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~~~~--~-~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~ 345 (519)
.+|...|++++|...|++..+ | +. ..|..+...+...|++++|...|++..+. .|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 999999999999999987754 3 33 45777778888889999999999988764 454 345555555
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHH
Q 044422 346 SCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHV 425 (519)
Q Consensus 346 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 425 (519)
++... +..+++.+...+ ..+...|.... ....+.+++|...++ ++++++|.++.+..
T Consensus 162 ~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~---------------~a~~l~p~~~~~~~ 218 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLG---------------EAVTLSPNRTEIKQ 218 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHH---------------HHHHHCTTCHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHH---------------HHhhcCCCCHHHHH
Confidence 55433 344455555543 22344443333 223344566666554 45667777766665
Q ss_pred HHHHH
Q 044422 426 QLANL 430 (519)
Q Consensus 426 ~L~~~ 430 (519)
.|...
T Consensus 219 ~l~~i 223 (228)
T 4i17_A 219 MQDQV 223 (228)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.93 E-value=9.3e-08 Score=85.33 Aligned_cols=194 Identities=7% Similarity=-0.015 Sum_probs=149.7
Q ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHccCC---C-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044422 168 ANVYVGSSLITLYSKCRVIIDAYKVFEEMP---V-RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSIL 243 (519)
Q Consensus 168 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 243 (519)
.|+..+......+.+.|++++|+..|++.. + ++...+..+..++...|++++|+..|++..+.. +-+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 456788889999999999999999999875 3 677788889999999999999999999998864 33567889999
Q ss_pred HHHHccCCchHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C---hhHHHHHHHH
Q 044422 244 SACTGSGALGQGRSAHCQTIRMGFFSYI-------QVANSLISMYCKCGNVEEAVYVFNNMHGK--D---IVSWNSMIAG 311 (519)
Q Consensus 244 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~---~~~~~~li~~ 311 (519)
.++...|++++|...++...+.. +.+. .+|..+...+...|++++|.+.|++..+- + ...|..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 99999999999999999998864 3344 56888889999999999999999998763 3 3466667677
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHH
Q 044422 312 YAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELD 373 (519)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 373 (519)
|...| ..+++++...+ ..+...|.... ....+.+++|...+++..+. .|+..
T Consensus 163 ~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~ 214 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT 214 (228)
T ss_dssp HHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence 76544 34455554443 22344454443 23456789999999999874 35443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.90 E-value=7.5e-08 Score=77.37 Aligned_cols=131 Identities=16% Similarity=0.257 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLG 383 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 383 (519)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|+++.|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 56677778888888888888888887653 2356677777888888888888888888887654 345667778888888
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 384 RAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 384 ~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
..|++++|.+.++++ +...|.+..++..++.+|...|++++|...++++.+..
T Consensus 81 ~~~~~~~A~~~~~~~---------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKA---------------LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHH---------------HHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 888998888887765 23445566677778888999999999999988887643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-07 Score=85.87 Aligned_cols=248 Identities=8% Similarity=-0.041 Sum_probs=167.6
Q ss_pred HHHHHhCCCHHHHHHHHccCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHH
Q 044422 177 ITLYSKCRVIIDAYKVFEEMPVRNV-VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQG 255 (519)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 255 (519)
|+-..-.|++..++.-...+.+.+. ..-..+.++|...|+++.. ..-.|....+..+...+ ..+ +
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence 3444557888888776666543222 2333345778888876642 12234443444333333 322 5
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 256 RSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK-----DIVSWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
...++...+.+ .++..++..+..++...|++++|++++.+.... +...+-.++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66677666655 455556668889999999999999999987432 456788889999999999999999999987
Q ss_pred CCCCC-----CHHHHHHHHHHHH--ccC--CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C
Q 044422 331 QRVKP-----DAITFLGVISSCR--HGG--LVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP-I 400 (519)
Q Consensus 331 ~~~~p-----~~~t~~~ll~~~~--~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~ 400 (519)
. .| +..+...|..++. ..| +...|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+. .
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 56 3667777777733 334 899999999998764 3553344445558999999999999988551 0
Q ss_pred CCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 401 YPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 401 ~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
.|+. +.--..+|.++.++..++......|+ +|.++++++++..
T Consensus 241 ~p~~------~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 YYSV------EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHT------TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccc------cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 0000 00000147778888788877777887 8899999998864
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=1e-07 Score=88.78 Aligned_cols=169 Identities=7% Similarity=-0.062 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHh----CCCCh-HHHHHHHHHHHHhCCCHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRT----GFIAN-VYVGSSLITLYSKCRVIIDA 189 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~A 189 (519)
++++|.+.|+.. ...+...|++++|...|....+. |-+++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 377777777665 33566778888888888777553 22222 45677777777777777777
Q ss_pred HHHHccCCC-----CC----hhHHHHHHHHHHhc-CChHHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHccCCchH
Q 044422 190 YKVFEEMPV-----RN----VVSWTAIIAAFAQE-WQVDMCLELYRMMRNSM----LEPN-DFTFTSILSACTGSGALGQ 254 (519)
Q Consensus 190 ~~~~~~m~~-----~~----~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g----~~p~-~~t~~~ll~~~~~~g~~~~ 254 (519)
+..|++... .+ ..+|+.+..+|... |++++|+..|++..+.. -.+. ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 777665541 11 23555566666664 66666666666554321 0000 2345555555555666666
Q ss_pred HHHHHHHHHHcCCCCcH------HHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 255 GRSAHCQTIRMGFFSYI------QVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 255 a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
|...++...+....... ..|..+..++...|++++|...|++..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66655555553211111 134444455555555555555555544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-07 Score=88.54 Aligned_cols=231 Identities=10% Similarity=0.043 Sum_probs=161.2
Q ss_pred hHHHHHHHHHHhCCCChHHHHHHHHHHHHhC--C-CHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044422 153 GGAPYQCLAIRTGFIANVYVGSSLITLYSKC--R-VIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRN 229 (519)
Q Consensus 153 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g-~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 229 (519)
+|.+++.+..+. .+++...| .+ + +. + ++++|...|++. ...|...|++++|...|.+...
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KL---F-SGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hh---c-CCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHH
Confidence 466666666554 23322222 22 2 32 2 478888777654 5577888999999998887754
Q ss_pred C----CCCCC-HHHHHHHHHHHHccCCchHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHhc-CCHHHHHHHHHhcC
Q 044422 230 S----MLEPN-DFTFTSILSACTGSGALGQGRSAHCQTIRM----GFFS-YIQVANSLISMYCKC-GNVEEAVYVFNNMH 298 (519)
Q Consensus 230 ~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~-~~~~~a~~~~~~~~ 298 (519)
. |-+++ ..+|+.+..+|.+.|++++|...++...+. |-.. -..+++.+...|... |++++|...|++..
T Consensus 66 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2 32222 468888999999999999999988877653 2111 145788899999996 99999999998765
Q ss_pred C--C---C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHH
Q 044422 299 G--K---D----IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDA------ITFLGVISSCRHGGLVEEGKVYFDSM 363 (519)
Q Consensus 299 ~--~---~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~t~~~ll~~~~~~g~~~~a~~~~~~m 363 (519)
+ | + ..+++.+...+.+.|++++|...|++..+....... ..|..+..++...|+++.|...|++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 1 1 356888899999999999999999999886433222 15677777888999999999999998
Q ss_pred HHcCCCcCH------HHHHHHHHHHH--HcCCHHHHHHHHHhC-CCCC
Q 044422 364 AKHGLKPEL------DHYSCVVDLLG--RAGLLEEARDFIKQM-PIYP 402 (519)
Q Consensus 364 ~~~~~~p~~------~~~~~li~~~~--~~g~~~~A~~~~~~~-~~~p 402 (519)
.+ +.|+. ..+..++.+|. ..+++++|...|+.+ .+.|
T Consensus 226 l~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 226 QS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp GC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred Hh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 75 23332 23444566664 456799999999876 3444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-06 Score=89.74 Aligned_cols=215 Identities=7% Similarity=-0.069 Sum_probs=145.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHH-HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 220 CLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGR-SAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 220 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
+..+|++.... ++-+...|...+..+...|+.++|. .+++..... ++.+...+-..+...-+.|+++.|.++|+.+.
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455555443 2334455555555666778888886 899888764 46677778888888889999999999998775
Q ss_pred C-------------CC------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcc-C
Q 044422 299 G-------------KD------------IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ-RVKPDAITFLGVISSCRHG-G 351 (519)
Q Consensus 299 ~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~-g 351 (519)
+ |+ ...|...+....+.|+.+.|..+|.+..+. +. +....|......-.+. +
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCC
Confidence 3 21 235777777777888999999999998876 21 1223333222222233 4
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHhhhcCCCCchhHHHHHHH
Q 044422 352 LVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNAVIWEAAESRLLLEPECAATHVQLANL 430 (519)
Q Consensus 352 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 430 (519)
+.+.|..+|+...+. ++-+...+...++.....|+.+.|..+|+.. ...|+. ......|...+..
T Consensus 485 d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~-------------~~~~~lw~~~~~f 550 (679)
T 4e6h_A 485 DTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS-------------HLLKMIFQKVIFF 550 (679)
T ss_dssp CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST-------------THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH-------------HHHHHHHHHHHHH
Confidence 589999999988865 3446667778888888889999999999876 222210 0112344445777
Q ss_pred HhccCCHHHHHHHHHHHHHCC
Q 044422 431 YAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 431 ~~~~g~~~~A~~~~~~m~~~g 451 (519)
-.+.|+.+.+.++.++|.+.-
T Consensus 551 E~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 551 ESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 777888888888888887654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-07 Score=75.93 Aligned_cols=125 Identities=14% Similarity=0.235 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYC 282 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (519)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++.+.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555556666666666666666655433 2244455555555556666666666665555443 233344444444444
Q ss_pred hcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044422 283 KCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMM 329 (519)
Q Consensus 283 ~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (519)
..|++++|...++.+.+ .+...+..+...+.+.|++++|...++++.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44444444444443321 123334444444444444444444444443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=7.3e-08 Score=79.83 Aligned_cols=144 Identities=11% Similarity=-0.026 Sum_probs=112.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 044422 277 LISMYCKCGNVEEAVYVFNNMHGK---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLV 353 (519)
Q Consensus 277 li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 353 (519)
|...+...|++++|+..+...... +...+..+...|.+.|++++|.+.|++..+... -+..+|..+..++...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCch
Confidence 344556677889999998887764 345667788899999999999999999887642 2677888899999999999
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhc
Q 044422 354 EEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAG 433 (519)
Q Consensus 354 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 433 (519)
++|...|++..+.. +-+...+..+...|.+.|++++|.+.+ ++++++++|.++.+|......+..
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~--------------~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYW--------------VERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHH--------------HHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHH--------------HHHHHHhCcCCHHHHHHHHHHHHH
Confidence 99999999999853 235778888999999999987766543 245678888888888888888877
Q ss_pred cCC
Q 044422 434 VRC 436 (519)
Q Consensus 434 ~g~ 436 (519)
.|+
T Consensus 147 ~G~ 149 (150)
T 4ga2_A 147 EGE 149 (150)
T ss_dssp CCC
T ss_pred hCc
Confidence 775
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-07 Score=99.51 Aligned_cols=171 Identities=10% Similarity=-0.009 Sum_probs=132.8
Q ss_pred HccCCchHHHHHHHHHH--------HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHc
Q 044422 247 TGSGALGQGRSAHCQTI--------RMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQH 315 (519)
Q Consensus 247 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 315 (519)
...|++++|.+.++... +.. +.+...+..+..+|...|++++|...|++..+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 77889999999998887 332 55677888889999999999999999988764 3667888888999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044422 316 GLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFI 395 (519)
Q Consensus 316 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 395 (519)
|++++|...|++..+... -+...+..+..++...|++++ ...|++..+.+ +-+...|..+..+|.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999887532 256678888888999999999 99999988754 335678888999999999999999988
Q ss_pred HhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCC
Q 044422 396 KQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRC 436 (519)
Q Consensus 396 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~ 436 (519)
++.. +++|.+..++..+..++...|+
T Consensus 558 ~~al---------------~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVP---------------PTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSC---------------TTSTTHHHHHHHHHHHTC----
T ss_pred Hhhc---------------ccCcccHHHHHHHHHHHHccCC
Confidence 8762 3444445555666666655444
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-06 Score=80.07 Aligned_cols=174 Identities=14% Similarity=0.117 Sum_probs=112.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 220 CLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGF-FSYIQVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 220 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
++..|++....+ .++..++..+..++...|++++|.+++......+- .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666665554 45555556777777778888888888877765542 2456677777888888888888888887776
Q ss_pred C--C-----ChhHHHHHHHH--HHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-
Q 044422 299 G--K-----DIVSWNSMIAG--YAQHG--LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKH- 366 (519)
Q Consensus 299 ~--~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~- 366 (519)
+ | +..+...+..+ ....| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+.
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4 3 13444555555 22233 788888888887654 345334444555778888888888888866532
Q ss_pred ----C----CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 367 ----G----LKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 367 ----~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
. -+-+..++..+|......|+ +|.++++++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 0 02355566455555555666 666666655
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.72 E-value=8.5e-07 Score=80.89 Aligned_cols=180 Identities=11% Similarity=0.025 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----ChhHHH
Q 044422 236 DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSY---IQVANSLISMYCKCGNVEEAVYVFNNMHG--K----DIVSWN 306 (519)
Q Consensus 236 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~----~~~~~~ 306 (519)
...+..+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|+...+ | ...++.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3444445555555555555555555555432 112 34445555555555555555555554432 1 112344
Q ss_pred HHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHH
Q 044422 307 SMIAGYAQ--------HGLAVRAIDLFEEMMKQRVKPDA-ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSC 377 (519)
Q Consensus 307 ~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 377 (519)
.+..++.. .|++++|...|++..+.. |+. .....+ ..+..+... -...+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH----HHHHHHH
Confidence 44444444 555555555555544431 111 111000 000000000 0011356
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCC---CchhHHHHHHHHhcc----------CCHHHHHHHH
Q 044422 378 VVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPE---CAATHVQLANLYAGV----------RCWDQAARVR 444 (519)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~L~~~~~~~----------g~~~~A~~~~ 444 (519)
+...|.+.|++++|...|+++ +...|+ .+.++..++.+|... |++++|...+
T Consensus 154 la~~~~~~g~~~~A~~~~~~~---------------l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~ 218 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAV---------------FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY 218 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH---------------HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH---------------HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence 788899999999999998865 233344 234677788888876 9999999999
Q ss_pred HHHHHCC
Q 044422 445 KLMKDKG 451 (519)
Q Consensus 445 ~~m~~~g 451 (519)
++..+.-
T Consensus 219 ~~~~~~~ 225 (261)
T 3qky_A 219 ERLLQIF 225 (261)
T ss_dssp HHHHHHC
T ss_pred HHHHHHC
Confidence 9998754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.70 E-value=5.8e-07 Score=82.01 Aligned_cols=183 Identities=9% Similarity=-0.052 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHccCCC--C-C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 044422 169 NVYVGSSLITLYSKCRVIIDAYKVFEEMPV--R-N---VVSWTAIIAAFAQEWQVDMCLELYRMMRNSML-EPN-DFTFT 240 (519)
Q Consensus 169 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~t~~ 240 (519)
+...+-.+...+.+.|++++|+..|+++.. | + ...+..+..+|.+.|++++|...|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445555666677777777777777777652 2 2 44666677777777777777777777766421 112 34555
Q ss_pred HHHHHHHc--------cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHH
Q 044422 241 SILSACTG--------SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGY 312 (519)
Q Consensus 241 ~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 312 (519)
.+..++.. .|++++|...++.+.+.. +.+.....++.......+ .-...+..+...|
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~--------------~~~~~~~~la~~~ 158 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRA--------------KLARKQYEAARLY 158 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 56666666 777777777777766643 212222211111100000 0011245567778
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHc
Q 044422 313 AQHGLAVRAIDLFEEMMKQRVKP--DAITFLGVISSCRHG----------GLVEEGKVYFDSMAKH 366 (519)
Q Consensus 313 ~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~----------g~~~~a~~~~~~m~~~ 366 (519)
.+.|++++|...|+++.+..... ....+..+..++... |++++|...++++.+.
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 88899999999888887753221 234566666677655 8888899988888864
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.3e-07 Score=78.30 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=11.2
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 044422 209 AAFAQEWQVDMCLELYRMMRN 229 (519)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~m~~ 229 (519)
..+...|++++|+..|++..+
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~ 32 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIA 32 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 344455555555555555544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-06 Score=81.51 Aligned_cols=176 Identities=9% Similarity=0.017 Sum_probs=120.3
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
+.+.....+.... +.+...+..+...+.+.|+++.|...++..++.. +-+...+..+...+.+.|++++|...++
T Consensus 101 ~~~~l~~~l~~~l----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~ 175 (287)
T 3qou_A 101 PEEAIRALLDXVL----PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLX 175 (287)
T ss_dssp CHHHHHHHHHHHS----CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CHHHHHHHHHHHc----CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4444444554443 3455666677777788888888888888888764 4466778888888888888888888888
Q ss_pred cCCC--CChhHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCC-Cc
Q 044422 195 EMPV--RNVVSWTAI-IAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFF-SY 270 (519)
Q Consensus 195 ~m~~--~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~ 270 (519)
+... |+....... ...+...++.++|...|++..... +.+...+..+...+...|++++|...+..+.+..-. .+
T Consensus 176 ~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~ 254 (287)
T 3qou_A 176 TIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAAD 254 (287)
T ss_dssp TSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGG
T ss_pred hCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc
Confidence 8864 443332222 223556677777888887776653 345667777788888888888888888877775411 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 044422 271 IQVANSLISMYCKCGNVEEAVYVFNN 296 (519)
Q Consensus 271 ~~~~~~li~~~~~~~~~~~a~~~~~~ 296 (519)
...+..++..|...|+.++|...|++
T Consensus 255 ~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 255 GQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp GHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 56677777777777777666666553
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.7e-07 Score=95.53 Aligned_cols=168 Identities=8% Similarity=-0.100 Sum_probs=135.4
Q ss_pred hcCCChhhHHHHHHHHH--------HhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhc
Q 044422 146 GSTRNIRGGAPYQCLAI--------RTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQE 214 (519)
Q Consensus 146 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 214 (519)
...|++++|...++... +. .+.+...+..+..++.+.|++++|+..|++.. ..+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999887 32 24456788888999999999999999999886 35677899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 044422 215 WQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVF 294 (519)
Q Consensus 215 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 294 (519)
|++++|...|++..+.. +-+...+..+..++.+.|++++ ...|+...+.. +.+...|..+..+|.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988754 2356778889999999999999 99999988875 556788899999999999999999999
Q ss_pred HhcCCC---ChhHHHHHHHHHHHcCC
Q 044422 295 NNMHGK---DIVSWNSMIAGYAQHGL 317 (519)
Q Consensus 295 ~~~~~~---~~~~~~~li~~~~~~g~ 317 (519)
++..+- +...|..+..++...++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 988763 34566667777665554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.6e-06 Score=76.09 Aligned_cols=169 Identities=12% Similarity=0.063 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHH----------------HHHHHHhcCCHHHHHHHHHhcCC-
Q 044422 237 FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANS----------------LISMYCKCGNVEEAVYVFNNMHG- 299 (519)
Q Consensus 237 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~~- 299 (519)
..+......+...|++++|...|+...+.. +.+...+.. +..+|.+.|++++|...|++..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344455667788999999999999998864 334556666 89999999999999999998764
Q ss_pred --CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHcCCCcCHHHH
Q 044422 300 --KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL--VEEGKVYFDSMAKHGLKPELDHY 375 (519)
Q Consensus 300 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~ 375 (519)
.+...|..+...+...|++++|...|++..+.. +-+..++..+..++...|. .+.+...++.... ..|....+
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 367889999999999999999999999998863 2256677777777765553 3344555554432 22333344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 044422 376 SCVVDLLGRAGLLEEARDFIKQM-PIYPNAVIWEA 409 (519)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 409 (519)
.....++...|++++|...|++. ...|+......
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 195 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 44566677789999999999875 56677554433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.3e-07 Score=83.59 Aligned_cols=220 Identities=8% Similarity=-0.068 Sum_probs=132.5
Q ss_pred CCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 044422 148 TRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMM 227 (519)
Q Consensus 148 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 227 (519)
.|++++|.++++...+.. +.. .+...++++.|...|.+ ....|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 345566666666554431 110 01114566666665543 245566667777777766655
Q ss_pred HHC----CCCCC-HHHHHHHHHHHHccCCchHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 044422 228 RNS----MLEPN-DFTFTSILSACTGSGALGQGRSAHCQTIRM----GFFS-YIQVANSLISMYCKCGNVEEAVYVFNNM 297 (519)
Q Consensus 228 ~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 297 (519)
... +-.+. ..+|+.+...|...|++++|...++...+. |-.. ...++..+...|.. |++++|...|++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 431 21111 346667777777777887777777766543 2111 13566777777777 8888888777765
Q ss_pred CC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 044422 298 HG-----KD----IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ----RVKPD-AITFLGVISSCRHGGLVEEGKVYFDSM 363 (519)
Q Consensus 298 ~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m 363 (519)
.+ .+ ..+++.+...|.+.|++++|+..|++..+. +..+. ..++..+..++...|++++|...|++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43 11 356777888888899999999888887653 21111 225555666677779999999999888
Q ss_pred HHcCCCcC------HHHHHHHHHHHHHcCCHHHHHH
Q 044422 364 AKHGLKPE------LDHYSCVVDLLGRAGLLEEARD 393 (519)
Q Consensus 364 ~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~ 393 (519)
. . .|+ ......++.++ ..|+.+.+.+
T Consensus 222 l-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 222 Y-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp T-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred h-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 7 3 232 12344455555 5677666665
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=9.4e-07 Score=90.63 Aligned_cols=162 Identities=7% Similarity=-0.081 Sum_probs=122.0
Q ss_pred cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 044422 249 SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLF 325 (519)
Q Consensus 249 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 325 (519)
.|++++|...+++..+.. +.+...+..+...|...|++++|.+.|++..+ .+...|..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999887764 45678899999999999999999999998765 35678999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHc---CCHHHHHHHHHhCCCCC
Q 044422 326 EEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRA---GLLEEARDFIKQMPIYP 402 (519)
Q Consensus 326 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~p 402 (519)
++..+.. +-+...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~----- 153 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRA----- 153 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH-----
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHH-----
Confidence 9998763 3357788899999999999999999999998754 33577888899999999 999999987764
Q ss_pred CHHHHHHHHHhhhcCCCCchhHHHHH
Q 044422 403 NAVIWEAAESRLLLEPECAATHVQLA 428 (519)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~L~ 428 (519)
+++.+|.+...|..|.
T Consensus 154 ----------al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 154 ----------AVAQGVGAVEPFAFLS 169 (568)
T ss_dssp ----------HHHHTCCCSCHHHHTT
T ss_pred ----------HHhcCCcccChHHHhC
Confidence 4688999888887666
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-06 Score=74.17 Aligned_cols=154 Identities=12% Similarity=0.015 Sum_probs=86.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHc
Q 044422 173 GSSLITLYSKCRVIIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSA-CTG 248 (519)
Q Consensus 173 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-~~~ 248 (519)
+..+...+.+.|++++|...|++... .+...+..+..++.+.|++++|+..|++..... |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 33445556667777777777776652 345566666777777777777777776664432 233222211111 112
Q ss_pred cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC---hhHHHHHHHHHHHcCChHHHHH
Q 044422 249 SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--KD---IVSWNSMIAGYAQHGLAVRAID 323 (519)
Q Consensus 249 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~A~~ 323 (519)
.+....|...++...+.. +.+...+..+...+...|++++|...|+++.+ |+ ...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222334556666655543 33456666666666666666666666665543 21 3356666666666666666666
Q ss_pred HHHHHH
Q 044422 324 LFEEMM 329 (519)
Q Consensus 324 ~~~~m~ 329 (519)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.9e-05 Score=71.97 Aligned_cols=220 Identities=10% Similarity=0.029 Sum_probs=159.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CchHHHHHHHHHHHcCCCCcHHHHHHHHHHH----Hhc---
Q 044422 214 EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG--ALGQGRSAHCQTIRMGFFSYIQVANSLISMY----CKC--- 284 (519)
Q Consensus 214 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~--- 284 (519)
....++|+.+++++...+ +-+...|+.--..+...| +++++...++.+.... +-+..+|+.--..+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 334568888888887753 223455677777777777 8888888888888764 34445554443333 444
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC------H
Q 044422 285 GNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAV--RAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL------V 353 (519)
Q Consensus 285 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~------~ 353 (519)
+++++++.+++.+.+ .+..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+...+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 678888888888764 46677877777778888888 999999999987655 77777776666667676 8
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHH-HHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHh
Q 044422 354 EEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEE-ARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYA 432 (519)
Q Consensus 354 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 432 (519)
+++.+.++.+.... +-|...|+.+-..+.+.|+..+ +.++++++-. .+ ..+|.++.++..|+.+|.
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~-~~-----------~~~~~s~~al~~la~~~~ 269 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVD-LE-----------KDQVTSSFALETLAKIYT 269 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE-GG-----------GTEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHh-cc-----------CCCCCCHHHHHHHHHHHH
Confidence 88999999988754 4478888888888888887443 4456655410 00 123667778888999999
Q ss_pred ccCCHHHHHHHHHHHHH
Q 044422 433 GVRCWDQAARVRKLMKD 449 (519)
Q Consensus 433 ~~g~~~~A~~~~~~m~~ 449 (519)
+.|+.++|.++++.+.+
T Consensus 270 ~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 270 QQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 99999999999999875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-06 Score=74.53 Aligned_cols=158 Identities=8% Similarity=-0.029 Sum_probs=102.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHc
Q 044422 274 ANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISS-CRH 349 (519)
Q Consensus 274 ~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~~ 349 (519)
+..+...+...|++++|...|+...+ .+...+..+...+...|++++|...+++..+.. |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 34455667777778888887777664 355677777777778888888888877765432 233322221111 112
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCC--chhHHHH
Q 044422 350 GGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPEC--AATHVQL 427 (519)
Q Consensus 350 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~L 427 (519)
.+....+...+++..+.. +-+...+..+...+...|++++|...++++ ++.+|.. +.++..|
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~---------------l~~~p~~~~~~a~~~l 150 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNI---------------LKVNLGAQDGEVKKTF 150 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HTTCTTTTTTHHHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHH---------------HHhCcccChHHHHHHH
Confidence 122234577777777642 225677778888888888888888877754 3344432 4466778
Q ss_pred HHHHhccCCHHHHHHHHHHHHH
Q 044422 428 ANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
+.+|...|+.++|...|++...
T Consensus 151 ~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 151 MDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHH
Confidence 8888888888888888887643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-05 Score=73.34 Aligned_cols=209 Identities=12% Similarity=-0.006 Sum_probs=137.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHH---HHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 044422 223 LYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQ---VANSLISMYCKCGNVEEAVYVFNNMHG 299 (519)
Q Consensus 223 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~ 299 (519)
.+.++......|+..+...+...+.-.- +.+.......+.. .+...+..+...|++++|..++++..+
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPI---------IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCT---------HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCH---------HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 3444444345677776666665553221 1111111122222 333446788899999999999988654
Q ss_pred C-----C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 300 K-----D----IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVK-PD----AITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 300 ~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
. + ...+..+...+...|++++|...+++..+.... ++ ..+++.+...|...|++++|...++++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 1 113334666677788999999999999884322 23 23688899999999999999999999884
Q ss_pred ----c-CCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCC-HH
Q 044422 366 ----H-GLKPE-LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRC-WD 438 (519)
Q Consensus 366 ----~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~-~~ 438 (519)
. +..+. ..++..+...|.+.|++++|.+++++.- . +.+-....+.-..+|..++.+|.+.|+ ++
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al--------~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 254 (293)
T 3u3w_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI--------E-ISCRINSMALIGQLYYQRGECLRKLEYEEA 254 (293)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------H-HHHHTTBCTTHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------H-HHHHcCcHHHHHHHHHHHHHHHHHhCCcHH
Confidence 2 22222 3477889999999999999999988651 0 000001111224578889999999995 69
Q ss_pred HHHHHHHHHHH
Q 044422 439 QAARVRKLMKD 449 (519)
Q Consensus 439 ~A~~~~~~m~~ 449 (519)
+|.+.+++...
T Consensus 255 ~A~~~~~~Al~ 265 (293)
T 3u3w_A 255 EIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3e-06 Score=75.34 Aligned_cols=182 Identities=15% Similarity=0.052 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCC-C-cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh----hHHHH
Q 044422 236 DFTFTSILSACTGSGALGQGRSAHCQTIRMGFF-S-YIQVANSLISMYCKCGNVEEAVYVFNNMHG--KDI----VSWNS 307 (519)
Q Consensus 236 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~ 307 (519)
...+..+...+.+.|++++|...|+.+.+..-. + ....+..+..+|.+.|++++|...|+.+.+ |+. .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344556667778888888888888888765311 1 235667777888888888888888887653 321 13444
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 044422 308 MIAGYAQ------------------HGLAVRAIDLFEEMMKQRVKPDAI-TFLGVISSCRHGGLVEEGKVYFDSMAKHGL 368 (519)
Q Consensus 308 li~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 368 (519)
+..++.. .|++++|...|+++.+. .|+.. ...... + ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----R------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----H------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----H------HHHHHHHHH----
Confidence 4444443 34455555555555543 12211 111000 0 000000000
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCc---hhHHHHHHHHhccCCHHHHHHHHH
Q 044422 369 KPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECA---ATHVQLANLYAGVRCWDQAARVRK 445 (519)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~L~~~~~~~g~~~~A~~~~~ 445 (519)
.....+...|.+.|++++|...|+++ ++..|+++ .++..++.+|.+.|++++|.+.++
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~---------------l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~ 208 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGM---------------LRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK 208 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHH---------------HHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHH---------------HHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 01134567788999999999988865 33444443 467789999999999999999999
Q ss_pred HHHHCCC
Q 044422 446 LMKDKGL 452 (519)
Q Consensus 446 ~m~~~g~ 452 (519)
.+...+.
T Consensus 209 ~l~~~~~ 215 (225)
T 2yhc_A 209 IIAANSS 215 (225)
T ss_dssp HHHHCCS
T ss_pred HHHhhCC
Confidence 9988763
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.55 E-value=7e-06 Score=72.19 Aligned_cols=160 Identities=8% Similarity=0.006 Sum_probs=94.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CchHHHHHHHHHHHcCCCCcHHHHH
Q 044422 200 NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG----ALGQGRSAHCQTIRMGFFSYIQVAN 275 (519)
Q Consensus 200 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (519)
++.++..+...|...+++++|+..|++..+.| +...+..|...|.. + +.++|...|+...+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44455555555555566666666666655544 33444455555555 4 5666666666665544 344555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcCCCC-----hhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 044422 276 SLISMYCK----CGNVEEAVYVFNNMHGKD-----IVSWNSMIAGYAQ----HGLAVRAIDLFEEMMKQRVKPDAITFLG 342 (519)
Q Consensus 276 ~li~~~~~----~~~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 342 (519)
.|...|.. .+++++|...|++..+.+ +.++..|...|.. .+++++|...|++..+.+ .+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHH
Confidence 55555555 566777777776665432 4666666666766 667777777777776651 23334555
Q ss_pred HHHHHHcc-C-----CHHHHHHHHHHHHHcCC
Q 044422 343 VISSCRHG-G-----LVEEGKVYFDSMAKHGL 368 (519)
Q Consensus 343 ll~~~~~~-g-----~~~~a~~~~~~m~~~~~ 368 (519)
|-..|... | +.++|...|+...+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 55555432 2 67778777777777663
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.7e-06 Score=77.89 Aligned_cols=163 Identities=9% Similarity=0.012 Sum_probs=120.8
Q ss_pred CCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHH-HHH
Q 044422 233 EPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--KDIVSWN-SMI 309 (519)
Q Consensus 233 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~-~li 309 (519)
+.+...+..+...+...|++++|...++...+.. +.+...+..+...+.+.|++++|...++.+.. |+..... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3345566677777888888888888888887764 55677888888888888888888888888765 4433222 222
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHHcCCH
Q 044422 310 AGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK-PELDHYSCVVDLLGRAGLL 388 (519)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~ 388 (519)
..+...++.++|...+++..... +.+...+..+...+...|++++|...+.++.+..-. .+...+..+...|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 33667777888888888887753 335677888888888999999999999998874311 1266788888999999998
Q ss_pred HHHHHHHHh
Q 044422 389 EEARDFIKQ 397 (519)
Q Consensus 389 ~~A~~~~~~ 397 (519)
++|...+++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 888887764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.7e-06 Score=73.96 Aligned_cols=141 Identities=8% Similarity=-0.094 Sum_probs=76.6
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC----CHHHHHHHH
Q 044422 118 KLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR----VIIDAYKVF 193 (519)
Q Consensus 118 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 193 (519)
+|+..|++..+.| ++..+..+-..+...+++++|...|+...+.| +...+..|...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555666666654 55666666666666677777777777766655 44455555555555 4 566666666
Q ss_pred ccCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHc----cCCchHHHHHHHHHH
Q 044422 194 EEMPV-RNVVSWTAIIAAFAQ----EWQVDMCLELYRMMRNSMLE-PNDFTFTSILSACTG----SGALGQGRSAHCQTI 263 (519)
Q Consensus 194 ~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~ 263 (519)
++..+ .++.++..|...|.. .+++++|+..|++..+.|.. .+...+..|...|.. .++.++|...++...
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 55542 344455555555544 45555555555555544311 013344444444444 445555555555554
Q ss_pred Hc
Q 044422 264 RM 265 (519)
Q Consensus 264 ~~ 265 (519)
+.
T Consensus 157 ~~ 158 (212)
T 3rjv_A 157 SL 158 (212)
T ss_dssp HT
T ss_pred Hc
Confidence 43
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.9e-06 Score=73.60 Aligned_cols=93 Identities=5% Similarity=-0.146 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044422 172 VGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGA 251 (519)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 251 (519)
.+..+...+...|++++|...|++..+++...|..+..++.+.|++++|+..|++..... +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 344556667777888888888887777777777777778888888888888887776643 3355667777777777777
Q ss_pred chHHHHHHHHHHHc
Q 044422 252 LGQGRSAHCQTIRM 265 (519)
Q Consensus 252 ~~~a~~~~~~~~~~ 265 (519)
+++|...++...+.
T Consensus 87 ~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777777664
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=4e-07 Score=75.30 Aligned_cols=111 Identities=13% Similarity=-0.036 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044422 173 GSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGS 249 (519)
Q Consensus 173 ~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 249 (519)
+-.+...|.+.|++++|++.|++.. +.+..+|..+..+|.+.|++++|+..|++..+.. +-+...+..+...+.+.
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3444555555555555555555543 2344455555555555555555555555555432 12344555555555555
Q ss_pred CCchHHHHH-HHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 044422 250 GALGQGRSA-HCQTIRMGFFSYIQVANSLISMYCKCG 285 (519)
Q Consensus 250 g~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~~ 285 (519)
|+.+++.+. ++...+.. |.+..+|......+...|
T Consensus 113 ~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 113 DVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp CSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred CChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 555444332 34444432 333444444444444433
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.7e-06 Score=87.25 Aligned_cols=147 Identities=5% Similarity=-0.146 Sum_probs=73.5
Q ss_pred CChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHH
Q 044422 149 RNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYR 225 (519)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 225 (519)
|++++|...++...+.. +-+...+..+...+.+.|++++|.+.|++..+ .+...|..+..+|...|++++|.+.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45566666666555432 22345566666666666666666666655432 234455666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc---CCHHHHHHHHHhcC
Q 044422 226 MMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC---GNVEEAVYVFNNMH 298 (519)
Q Consensus 226 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~ 298 (519)
+..+.. +-+...+..+..++.+.|++++|.+.++...+.. +.+...+..+...+... |+.++|.+.+++..
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 655542 2234555556666666666666666666655543 33445555555666665 56666666555543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.4e-06 Score=79.98 Aligned_cols=169 Identities=11% Similarity=-0.039 Sum_probs=124.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHhcCCHH
Q 044422 214 EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRM----GFFS-YIQVANSLISMYCKCGNVE 288 (519)
Q Consensus 214 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~ 288 (519)
.++++.|...|.+ ....|...|++++|...+....+. +-.. -..+|+.+...|.+.|+++
T Consensus 29 ~~~~~~A~~~~~~---------------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAK---------------AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 3556666666554 356778899999999998877653 2111 2458889999999999999
Q ss_pred HHHHHHHhcCC-------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHccCCHH
Q 044422 289 EAVYVFNNMHG-------K--DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR----VKP-DAITFLGVISSCRHGGLVE 354 (519)
Q Consensus 289 ~a~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~~t~~~ll~~~~~~g~~~ 354 (519)
+|...|++..+ + -..+++.+...|.. |++++|+..|++..+.. -.+ ...++..+...+...|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 99888876542 1 13577888888888 99999999999876531 111 1457788889999999999
Q ss_pred HHHHHHHHHHH----cCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 355 EGKVYFDSMAK----HGLKPE-LDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 355 ~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+|...|++..+ .+..+. ...+..+..++...|++++|...|++.
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999875 222222 235667777888889999999999875
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-05 Score=74.05 Aligned_cols=61 Identities=3% Similarity=-0.142 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccC-CHHHHHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMK----QRVKPD-AITFLGVISSCRHGG-LVEEGKVYFDSMA 364 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~t~~~ll~~~~~~g-~~~~a~~~~~~m~ 364 (519)
+|..+...|.+.|++++|...+++..+ .+..+. ..+|..+..++.+.| ..++|...+++..
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 444555555555555555555554432 111111 344555555555555 3455555555544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.47 E-value=7.2e-06 Score=72.81 Aligned_cols=60 Identities=7% Similarity=-0.138 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 044422 171 YVGSSLITLYSKCRVIIDAYKVFEEMPV--RN----VVSWTAIIAAFAQEWQVDMCLELYRMMRNS 230 (519)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 230 (519)
..+-.+...+.+.|++++|+..|+++.. |+ ...+..+..++.+.|++++|+..|++..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3444455666677777777777776652 22 235666666777777777777777776654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=9.1e-06 Score=71.21 Aligned_cols=125 Identities=7% Similarity=-0.052 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044422 273 VANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL 352 (519)
Q Consensus 273 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 352 (519)
.+..+...+...|++++|...|++...++...|..+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 455667788889999999999999888888899999999999999999999999988764 3366788888889999999
Q ss_pred HHHHHHHHHHHHHcC--------------CCc-CHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 353 VEEGKVYFDSMAKHG--------------LKP-ELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 353 ~~~a~~~~~~m~~~~--------------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+++|...|++..+.. ..| ....+..+..+|...|++++|.+.++..
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999988742 111 2367888999999999999999988865
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.42 E-value=8.2e-06 Score=68.08 Aligned_cols=130 Identities=9% Similarity=0.028 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLL 382 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 382 (519)
..+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667777888888888888888877653 2356677777888888888888888888887653 34567788888888
Q ss_pred HHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHH--HHHHhccCCHHHHHHHHHHHHH
Q 044422 383 GRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQL--ANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 383 ~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L--~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
...|++++|...+++. +.+.|.+...+..+ +..+...|++++|++.++....
T Consensus 92 ~~~~~~~~A~~~~~~a---------------~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETV---------------VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHH---------------HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888877754 34455555555333 4447778889999888887643
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.41 E-value=7.4e-06 Score=65.25 Aligned_cols=110 Identities=13% Similarity=0.065 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLL 382 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 382 (519)
..+......|.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 345556667777777777777777766643 2356667777777777777777777777777643 33466677777777
Q ss_pred HHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHH
Q 044422 383 GRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLAN 429 (519)
Q Consensus 383 ~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~ 429 (519)
...|++++|.+.|++. ++++|.+..++..|..
T Consensus 92 ~~~~~~~~A~~~~~~a---------------l~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDA---------------LQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH---------------HHHCcCCHHHHHHHHH
Confidence 7777777777766543 4556666555555443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.40 E-value=2.9e-05 Score=80.17 Aligned_cols=126 Identities=13% Similarity=0.072 Sum_probs=60.0
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHc-C-CCCcHHHHHHHHHHHHhc-CCHHHHHHHHHhcCC---CChhHHHHHHHH
Q 044422 238 TFTSILSACTGSGALGQGRSAHCQTIRM-G-FFSYIQVANSLISMYCKC-GNVEEAVYVFNNMHG---KDIVSWNSMIAG 311 (519)
Q Consensus 238 t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~---~~~~~~~~li~~ 311 (519)
.|...+....+.|..+.|..+|....+. + ..+...+..+.+. .+. ++.+.|..+|+...+ .+...|...+..
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE--~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE--YHISKDTKTACKVLELGLKYFATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH--HTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 3444445445555555555555555543 1 1122222222222 222 235555555554443 233444455555
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 312 YAQHGLAVRAIDLFEEMMKQRVKP--DAITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
....|+.+.|..+|++.......+ ....|...+.--...|+.+.+..+.+++.+
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555566666666666555442211 123455555555555666666666666665
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.39 E-value=3.9e-06 Score=69.17 Aligned_cols=98 Identities=11% Similarity=0.070 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcC
Q 044422 338 ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLE 417 (519)
Q Consensus 338 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~ 417 (519)
..+..+...+.+.|++++|...|++..+.. +-+...|..+..+|...|++++|...|++ ++.++
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~---------------al~l~ 100 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAV---------------AFALG 100 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------HHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHH---------------HHhhC
Confidence 356666777888999999999999988753 34677888899999999999999987764 46788
Q ss_pred CCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 418 PECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 418 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
|+++.+|..+..+|...|++++|...|++..+..
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999988764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.39 E-value=6.5e-06 Score=71.39 Aligned_cols=80 Identities=11% Similarity=-0.053 Sum_probs=34.0
Q ss_pred ccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC------C---ChhHHHHHHHHHHHcCCh
Q 044422 248 GSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG------K---DIVSWNSMIAGYAQHGLA 318 (519)
Q Consensus 248 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------~---~~~~~~~li~~~~~~g~~ 318 (519)
..|++++|.+.++.+... ......++..+...+...|++++|...+++..+ . ...+++.+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 112344455555555555555555555544332 0 122344444444445555
Q ss_pred HHHHHHHHHH
Q 044422 319 VRAIDLFEEM 328 (519)
Q Consensus 319 ~~A~~~~~~m 328 (519)
++|...+++.
T Consensus 83 ~~A~~~~~~a 92 (203)
T 3gw4_A 83 DAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.6e-06 Score=73.05 Aligned_cols=62 Identities=8% Similarity=-0.018 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHccCCchHHHHHHHHH
Q 044422 201 VVSWTAIIAAFAQEWQVDMCLELYRMMRN----SMLEP-NDFTFTSILSACTGSGALGQGRSAHCQT 262 (519)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 262 (519)
..+++.+...+...|++++|...+++... .+..| ...++..+...+...|++++|...++..
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 92 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444445555555555554444432 11111 1233444444444555555554444443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00018 Score=66.58 Aligned_cols=212 Identities=8% Similarity=0.045 Sum_probs=121.8
Q ss_pred hhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--CHHHHHHHHccCC---CCChhHHHHHHHHH----Hhc---CChH
Q 044422 151 IRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR--VIIDAYKVFEEMP---VRNVVSWTAIIAAF----AQE---WQVD 218 (519)
Q Consensus 151 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~---~~~~~~~~~li~~~----~~~---~~~~ 218 (519)
-++|...++.++... +-+..+|+.--.++...| ++++++++++.+. +.+..+|+.--..+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 346777777777664 334455676666777777 7888888777765 23445555544444 444 6777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCch--HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC------HHHH
Q 044422 219 MCLELYRMMRNSMLEPNDFTFTSILSACTGSGALG--QGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN------VEEA 290 (519)
Q Consensus 219 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------~~~a 290 (519)
+++.+++++.+.. +-+-.+|+.-.-.+.+.|.++ ++.+.++.+.+.. +-+-..|+--...+.+.++ ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 8888887777654 345666666666666677766 7777777777665 4455555555444444444 5555
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHHcCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 291 VYVFNNMHG---KDIVSWNSMIAGYAQHGLAVR-AIDLFEEMMKQR--VKPDAITFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 291 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
++.++.+.. .|..+|+-+-..+.+.|+... +..+.++..+.+ -..+...+..+..++.+.|+.++|.++++.+.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 555554432 244555555555555555322 333333333211 12244455555555555566666666666555
Q ss_pred H
Q 044422 365 K 365 (519)
Q Consensus 365 ~ 365 (519)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.4e-05 Score=62.71 Aligned_cols=94 Identities=13% Similarity=0.251 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLL 382 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 382 (519)
..|..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|..+++++.+.. +.+...+..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 455556666666666666666666665542 2245556666666666666666666666666542 23455666666666
Q ss_pred HHcCCHHHHHHHHHhC
Q 044422 383 GRAGLLEEARDFIKQM 398 (519)
Q Consensus 383 ~~~g~~~~A~~~~~~~ 398 (519)
...|++++|...++++
T Consensus 88 ~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHH
Confidence 6777777766666543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.7e-05 Score=73.58 Aligned_cols=25 Identities=0% Similarity=-0.130 Sum_probs=14.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 044422 205 TAIIAAFAQEWQVDMCLELYRMMRN 229 (519)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~m~~ 229 (519)
...+..+...|++++|.+.+++..+
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~ 103 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 3344555566666666666655544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.32 E-value=9e-06 Score=77.13 Aligned_cols=129 Identities=13% Similarity=-0.012 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD--------------AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK 369 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 369 (519)
.|..+...+.+.|++++|...|++..+...... ...|..+..++.+.|++++|...+++..+.. +
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 227 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 227 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 344444445555555555555555444321111 3567777777888888888888888887653 3
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHH-HHHHHHHH
Q 044422 370 PELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQA-ARVRKLMK 448 (519)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A-~~~~~~m~ 448 (519)
.+...|..+..+|...|++++|...|++. ++++|.+..++..|..++...|++++| ...++.|.
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~a---------------l~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKV---------------LQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777888888888888888776643 566777777888888888888888887 44555553
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.31 E-value=0.0011 Score=66.15 Aligned_cols=203 Identities=12% Similarity=-0.028 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH-HHHHHh
Q 044422 218 DMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEA-VYVFNN 296 (519)
Q Consensus 218 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a-~~~~~~ 296 (519)
+++..+|+++.... +.+...|...+..+.+.|+.+.|..+++..... +.+...+.. |....+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 34566777776643 445666777777778889999999999988887 444433332 2221111111 112221
Q ss_pred cC--C-------C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHH
Q 044422 297 MH--G-------K---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCR-HGGLVEEGKVYFDSM 363 (519)
Q Consensus 297 ~~--~-------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~m 363 (519)
.. . + ....|...+....+.++.+.|..+|++. +. ...+...|......-. ..++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 10 0 1 1245666666666788899999999998 32 1234444443222212 234699999999998
Q ss_pred HHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHH
Q 044422 364 AKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARV 443 (519)
Q Consensus 364 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~ 443 (519)
.+.. +-++..+...++.....|+.+.|..+|+.+. .....|.. .+..-...|+.+.+.++
T Consensus 347 l~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~-----------------~~~fE~~~G~~~~~r~v 406 (493)
T 2uy1_A 347 LLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDS-----------------MIEYEFMVGSMELFREL 406 (493)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHH-----------------HHHHHHHHSCHHHHHHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHH-----------------HHHHHHHCCCHHHHHHH
Confidence 8642 2235556777888888999999999999983 23444444 45555667999999998
Q ss_pred HHHHHH
Q 044422 444 RKLMKD 449 (519)
Q Consensus 444 ~~~m~~ 449 (519)
++++.+
T Consensus 407 ~~~~~~ 412 (493)
T 2uy1_A 407 VDQKMD 412 (493)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.31 E-value=3.9e-05 Score=70.64 Aligned_cols=192 Identities=10% Similarity=-0.025 Sum_probs=117.3
Q ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHH
Q 044422 235 NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAG 311 (519)
Q Consensus 235 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 311 (519)
+...+..+...+.+.|++++|...++...+.. +.+...|..+..+|.+.|++++|...++...+ .+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44566667777777777777777777777654 44677777888888888888888888887665 255677888888
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHH
Q 044422 312 YAQHGLAVRAIDLFEEMMKQRVKPDA-ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEE 390 (519)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 390 (519)
|...|++++|...|++..+.. |+. ..+...+....+. ..+ .-+..........+......+... ..|+.++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKK-KRWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHH-HHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 888888888888888776532 110 0011111111111 111 122223333444555554444332 2678888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhcc-CCHHHHHHHHHHHHHC
Q 044422 391 ARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGV-RCWDQAARVRKLMKDK 450 (519)
Q Consensus 391 A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-g~~~~A~~~~~~m~~~ 450 (519)
|.+.++.. ++++|.+......+...+.+. +++++|.++|++..+.
T Consensus 154 A~~~~~~a---------------l~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRN---------------HEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGG---------------GTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhh---------------hccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88777654 233343333444455556555 6788999999887654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.6e-05 Score=63.38 Aligned_cols=118 Identities=12% Similarity=0.024 Sum_probs=79.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 044422 301 DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVD 380 (519)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 380 (519)
+...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34566677777777777777777777776643 2256667777777777788888888877777643 335666777777
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccC
Q 044422 381 LLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVR 435 (519)
Q Consensus 381 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g 435 (519)
.+.+.|++++|.+.+++. +..+|.+...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~---------------~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKA---------------LDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHH---------------HHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHH---------------HHhCCCchHHHHHHHHHHHHhc
Confidence 778888888887776644 3445555556666666665554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.5e-05 Score=62.50 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
++..+..++...|++++|...|+++.... +.+..++..+...+...|++++|...++.+.+
T Consensus 45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33344444444444444444444443321 12333344444444444444444444444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.6e-05 Score=62.98 Aligned_cols=118 Identities=12% Similarity=0.021 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLL 382 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 382 (519)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 345555556666666666666666665532 2245555666666666666666666666666532 22355566666666
Q ss_pred HHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCH
Q 044422 383 GRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCW 437 (519)
Q Consensus 383 ~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~ 437 (519)
...|++++|...+++. +...|.++.++..+..++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~---------------~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKA---------------LELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHH---------------HHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHH---------------HhcCccchHHHHHHHHHHHHHhcC
Confidence 6667766666665543 334455555555566666655543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.27 E-value=2.2e-05 Score=65.40 Aligned_cols=90 Identities=10% Similarity=0.100 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCK 283 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (519)
|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3444444445555555555554444332 1233444444444444445555444444444432 2233334444444444
Q ss_pred cCCHHHHHHHHH
Q 044422 284 CGNVEEAVYVFN 295 (519)
Q Consensus 284 ~~~~~~a~~~~~ 295 (519)
.|++++|...|+
T Consensus 94 ~~~~~~A~~~~~ 105 (166)
T 1a17_A 94 LGKFRAALRDYE 105 (166)
T ss_dssp TTCHHHHHHHHH
T ss_pred hccHHHHHHHHH
Confidence 444444444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-05 Score=63.41 Aligned_cols=93 Identities=9% Similarity=-0.011 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044422 172 VGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG 248 (519)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 248 (519)
.+......|.+.|++++|+..|++.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..++..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 44445555555555555555555543 2344455555555555555555555555555432 2234455555555555
Q ss_pred cCCchHHHHHHHHHHHc
Q 044422 249 SGALGQGRSAHCQTIRM 265 (519)
Q Consensus 249 ~g~~~~a~~~~~~~~~~ 265 (519)
.|++++|.+.|+...+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 55555555555555554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.7e-06 Score=69.24 Aligned_cols=99 Identities=8% Similarity=-0.027 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhc
Q 044422 337 AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLL 416 (519)
Q Consensus 337 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~ 416 (519)
...+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|...|++. +.+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------l~l 84 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYG---------------AVM 84 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHH---------------Hhc
Confidence 3455566677788888888888888887643 346777778888888888888888877643 567
Q ss_pred CCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 417 EPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 417 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
+|.++.++..+..+|...|++++|...|++..+..
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 78888888888888888999999988888876653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00013 Score=67.50 Aligned_cols=161 Identities=15% Similarity=0.093 Sum_probs=102.4
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hh
Q 044422 238 TFTSILSACTGSGALGQGRSAHCQTIRMGFFSY-----IQVANSLISMYCKCGNVEEAVYVFNNMHG-----KD----IV 303 (519)
Q Consensus 238 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~ 303 (519)
.+...+..+...|++++|.+.+....+...... ...+..+...+...|++++|...+++..+ .+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566677788888888888877766432211 12334455666777788888887776532 11 34
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCc-CH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQ-RVKPD-----AITFLGVISSCRHGGLVEEGKVYFDSMAKH----GLKP-EL 372 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~ 372 (519)
+|+.+...|...|++++|...+++..+. ...|+ ..++..+...|...|++++|...+++..+. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6777777788888888888888776521 01112 146677777777888888888887776642 1111 14
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHhC
Q 044422 373 DHYSCVVDLLGRAGLLEEA-RDFIKQM 398 (519)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A-~~~~~~~ 398 (519)
.+|..+...|.+.|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5667777777778887777 6555543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=3.1e-06 Score=73.46 Aligned_cols=157 Identities=11% Similarity=-0.009 Sum_probs=102.6
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC--------------HHHH
Q 044422 279 SMYCKCGNVEEAVYVFNNMHGK---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVK-PD--------------AITF 340 (519)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~--------------~~t~ 340 (519)
......|+++++.+.|+...+. ....+..+...+...|++++|...|++..+.... |+ ...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3344455566666655533221 3446677777888889999999999888774321 11 2677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCC
Q 044422 341 LGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPEC 420 (519)
Q Consensus 341 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 420 (519)
..+..++...|++++|...++...+.. +.+...+..+..+|...|++++|.+.|++. +.++|.+
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a---------------l~~~p~~ 155 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKA---------------ASLNPNN 155 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------HHHSTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHH---------------HHHCCCc
Confidence 888888999999999999999998753 346778888999999999999999887744 5667778
Q ss_pred chhHHHHHHHHhccCCHHHHH-HHHHHHHHCC
Q 044422 421 AATHVQLANLYAGVRCWDQAA-RVRKLMKDKG 451 (519)
Q Consensus 421 ~~~~~~L~~~~~~~g~~~~A~-~~~~~m~~~g 451 (519)
..++..+..++...++.+++. ..++.|...|
T Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 156 LDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 888888888888888887777 5666665554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.2e-05 Score=62.56 Aligned_cols=60 Identities=7% Similarity=-0.014 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTI 263 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 263 (519)
.|..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|...++...
T Consensus 52 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 52 LYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333334444444444443333321 1123333333344444444444444444333
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.1e-05 Score=74.38 Aligned_cols=189 Identities=6% Similarity=-0.022 Sum_probs=111.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 044422 200 NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLIS 279 (519)
Q Consensus 200 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 279 (519)
+...+..+...+.+.|++++|...|++..... +-+...|..+..++.+.|++++|...++...+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34456666677777777777777777776643 2256667777777777777777777777776653 445667777777
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 044422 280 MYCKCGNVEEAVYVFNNMHGK---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEG 356 (519)
Q Consensus 280 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 356 (519)
+|...|++++|...|+...+- +...+...+....+ ..++ ..+..........+......+ ..+. .|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKK-KRWNSIEERRIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHH-HHHHHHHHTCCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHH-HHHHHHHHHHHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 777778888887777765431 11111111111111 1111 122223333344444443333 3332 6888888
Q ss_pred HHHHHHHHHcCCCcCHHH-HHHHHHHHHHc-CCHHHHHHHHHhC
Q 044422 357 KVYFDSMAKHGLKPELDH-YSCVVDLLGRA-GLLEEARDFIKQM 398 (519)
Q Consensus 357 ~~~~~~m~~~~~~p~~~~-~~~li~~~~~~-g~~~~A~~~~~~~ 398 (519)
.+.++...+. .|+... ...+-..+.+. +.+++|.++|...
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 155 LEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888877763 455433 33344444444 6788899999877
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=2.4e-05 Score=61.95 Aligned_cols=62 Identities=6% Similarity=-0.094 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
..|..+..++...|++++|...+++..... +.+...+..+...+...|++++|...++...+
T Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 47 VYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 334444444444444444444444443321 12233344444444444444444444444443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00084 Score=62.90 Aligned_cols=229 Identities=13% Similarity=0.054 Sum_probs=153.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc-C-
Q 044422 209 AAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG-ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC-G- 285 (519)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~- 285 (519)
....+.+..++|+++++++.... +-+...|+.--..+...| .++++..+++.+.... +-+..+|+.-...+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 33344455678888888887754 224455666666666677 5888888888888765 45666776666666665 5
Q ss_pred CHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--
Q 044422 286 NVEEAVYVFNNMHGK---DIVSWNSMIAGYAQHGLAV--------RAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL-- 352 (519)
Q Consensus 286 ~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-- 352 (519)
++++++++++.+.+. |..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 778888888888764 4556665555555555555 899999999887544 77788888777777776
Q ss_pred -----HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHhCCCCCCHHHH
Q 044422 353 -----VEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLL--------------------EEARDFIKQMPIYPNAVIW 407 (519)
Q Consensus 353 -----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~~p~~~~~ 407 (519)
++++.+.+++..... +-|...|+-+-..+.+.|+. ....++..++....+
T Consensus 219 ~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 293 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPL---- 293 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CC----
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccc----
Confidence 688888888888753 34777787777667766653 223333333310000
Q ss_pred HHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 408 EAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
.....+.++.+...|+..|...|+.++|.++++.+.+.
T Consensus 294 -----~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 294 -----PEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp -----CSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----ccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 00123466778888999999999999999999998643
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.4e-05 Score=65.79 Aligned_cols=92 Identities=13% Similarity=-0.053 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044422 172 VGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG 248 (519)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 248 (519)
.+..+...+.+.|++++|+..|++.. +.+...|..+..+|...|++++|+..|++..... +-+...|..+..++..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 34444444444444444444444433 1233344444444444444444444444444322 1123334444444444
Q ss_pred cCCchHHHHHHHHHHH
Q 044422 249 SGALGQGRSAHCQTIR 264 (519)
Q Consensus 249 ~g~~~~a~~~~~~~~~ 264 (519)
.|++++|...|+...+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444444444444444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.15 E-value=6.7e-05 Score=68.00 Aligned_cols=120 Identities=12% Similarity=-0.031 Sum_probs=56.2
Q ss_pred HHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C----hhHHHHHHHHHHHcCCh
Q 044422 244 SACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK-D----IVSWNSMIAGYAQHGLA 318 (519)
Q Consensus 244 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~----~~~~~~li~~~~~~g~~ 318 (519)
..+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+. + ...+..+-.++.+.|++
T Consensus 110 ~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 110 ACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH
Confidence 33444444444444444443322 22223333344555555555555555544331 1 12344455555566666
Q ss_pred HHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 319 VRAIDLFEEMMKQRVKPD--AITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 319 ~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
++|+..|++.......|. .........++.+.|+.++|..+|+++..
T Consensus 188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666665553222132 11233334445556666666666666655
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.9e-05 Score=63.15 Aligned_cols=96 Identities=10% Similarity=-0.002 Sum_probs=71.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCC
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEP 418 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~ 418 (519)
.+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|...|++. +.++|
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------l~~~p 83 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYG---------------ALMDI 83 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCT
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHH---------------HhcCC
Confidence 44455566777788888888888877643 336667777788888888888888776643 56677
Q ss_pred CCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 419 ECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 419 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
.++.++..+..+|...|++++|.+.|++..+.
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 78888888888888888888888888877664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=4e-05 Score=60.70 Aligned_cols=96 Identities=13% Similarity=0.024 Sum_probs=57.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCC
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEP 418 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~ 418 (519)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++. ++++|
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a---------------l~~~p 69 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKA---------------IEKDP 69 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHH---------------HHhCC
Confidence 34444555566666666666666665532 224556666666666666666666655432 44556
Q ss_pred CCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 419 ECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 419 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
.++.+|..+..+|...|++++|...|++..+.
T Consensus 70 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 70 NFVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 66666666666666777777776666665543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.1e-05 Score=65.58 Aligned_cols=115 Identities=7% Similarity=0.036 Sum_probs=60.5
Q ss_pred cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHH-HHHcCCh--HHHH
Q 044422 249 SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAG-YAQHGLA--VRAI 322 (519)
Q Consensus 249 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~-~~~~g~~--~~A~ 322 (519)
.|++++|...++...+.. +.+...+..+...|...|++++|...|++..+ .+...+..+..+ +...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 445555555555554443 33445555555555555555555555554432 244455555555 5556665 6666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 323 DLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 323 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
..+++..+.. +-+...+..+...+...|++++|...+++..+
T Consensus 102 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 102 AMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 6666665542 12344555555566666666666666666655
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.07 E-value=4.9e-05 Score=72.03 Aligned_cols=120 Identities=6% Similarity=-0.066 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCCchHHHHHHHHHHHcC
Q 044422 201 VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPN--------------DFTFTSILSACTGSGALGQGRSAHCQTIRMG 266 (519)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 266 (519)
...|..+...+.+.|++++|+..|++......... ...|..+..++.+.|++++|...++...+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34455555556666666666666655554321110 2344444444444455555544444444432
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHH
Q 044422 267 FFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRA 321 (519)
Q Consensus 267 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 321 (519)
+.+...+..+..+|...|++++|...|++..+ .+...+..+..++.+.|+.++|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 22334444444444444444444444443321 1233344444444444444444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.3e-05 Score=66.40 Aligned_cols=114 Identities=11% Similarity=-0.049 Sum_probs=48.1
Q ss_pred CChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHH-HHhcCCh--HHHHH
Q 044422 149 RNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAA-FAQEWQV--DMCLE 222 (519)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~-~~~~~~~--~~a~~ 222 (519)
|+++.|...+....+.. +.+...+..+...|...|++++|...|++.. +.+...|..+..+ +...|++ ++|..
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 44444444444444332 2233444444444444444444444444433 1233334444444 4444444 44554
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 223 LYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 223 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
.|++..... +-+...+..+...+...|++++|...++.+.+
T Consensus 103 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 103 MIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 444444432 12233444444444444555555444444444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00014 Score=65.99 Aligned_cols=181 Identities=7% Similarity=-0.054 Sum_probs=108.4
Q ss_pred cCHHHHHHHHHHHhHCCCCCCHHHHHHHH-------HHHhcCCChhhHHHHHHHHHHhCCCChH----------------
Q 044422 114 VDVEKLISMHHDLHRERLKVDASFLSTAV-------TSCGSTRNIRGGAPYQCLAIRTGFIANV---------------- 170 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll-------~~~~~~~~~~~a~~~~~~~~~~g~~~~~---------------- 170 (519)
.+...|.+.|.+..+... -....|..++ ..+.+.++...+...+..-. ++.|+.
T Consensus 20 ~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEECCTTTCCCEE
T ss_pred CCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhccCCccccccc
Confidence 489999999999987642 2455666662 33333333333333333322 222221
Q ss_pred ------HHHHHHHHHHHhCCCHHHHHHHHccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHH
Q 044422 171 ------YVGSSLITLYSKCRVIIDAYKVFEEMPV--RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPN--DFTFT 240 (519)
Q Consensus 171 ------~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~ 240 (519)
..+-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~ 175 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV 175 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence 2233456677778888888888888863 433355556667788888888888887554321 121 23566
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 241 SILSACTGSGALGQGRSAHCQTIRMGFFS--YIQVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 241 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
.+..++...|++++|...|++.......| ..........++.+.|+.++|..+|+++.
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67777777888888888777776433213 23344555556666666666666666554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.06 E-value=7.1e-05 Score=60.05 Aligned_cols=100 Identities=13% Similarity=0.023 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 044422 335 PDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRL 414 (519)
Q Consensus 335 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~ 414 (519)
.+...+..+...+...|+++.|...|+...+.. +.+...+..+..++...|++++|...+++. +
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---------------l 70 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRA---------------L 70 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------H
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------H
Confidence 355667777777778888888888888777643 335667777888888888888888766543 4
Q ss_pred hcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 415 LLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 415 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
.++|.++.++..+..+|...|++++|...|++..+.
T Consensus 71 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 71 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 566777777888888888888888888888887654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-05 Score=69.92 Aligned_cols=121 Identities=6% Similarity=-0.010 Sum_probs=58.6
Q ss_pred HHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC--------------HH
Q 044422 176 LITLYSKCRVIIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLE-PN--------------DF 237 (519)
Q Consensus 176 li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~--------------~~ 237 (519)
.+......|+++.+.+.|+.-.. .....+..+...+...|++++|+..|++....... |+ ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 34444555666666666654332 23445666677777777777777777777653211 10 14
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 044422 238 TFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNM 297 (519)
Q Consensus 238 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 297 (519)
.+..+..++...|++++|...++...+.. +.+...+..+..+|...|++++|...|+..
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44455555555555555555555555442 333444445555555555555555555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.03 E-value=4.3e-05 Score=58.55 Aligned_cols=98 Identities=12% Similarity=-0.063 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcC
Q 044422 338 ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLE 417 (519)
Q Consensus 338 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~ 417 (519)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++. ++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a---------------~~~~ 70 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYV---------------INVI 70 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHTS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHH---------------HHhC
Confidence 345566667777888888888888877643 335667777888888888888888877654 3455
Q ss_pred CC--CchhHHHHHHHHhcc-CCHHHHHHHHHHHHHCC
Q 044422 418 PE--CAATHVQLANLYAGV-RCWDQAARVRKLMKDKG 451 (519)
Q Consensus 418 ~~--~~~~~~~L~~~~~~~-g~~~~A~~~~~~m~~~g 451 (519)
|. +..++..+..+|... |++++|.+.+++..+..
T Consensus 71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 66 667777788888899 99999999888887664
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.02 E-value=5.6e-05 Score=63.09 Aligned_cols=93 Identities=11% Similarity=-0.025 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 044422 302 IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDL 381 (519)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 381 (519)
...|..+...+.+.|++++|...|++..+.. +-+...|..+..++...|++++|...+++..+.. +-+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455666666666677777777666666542 2245556666666666666666666666666543 2235556666666
Q ss_pred HHHcCCHHHHHHHHH
Q 044422 382 LGRAGLLEEARDFIK 396 (519)
Q Consensus 382 ~~~~g~~~~A~~~~~ 396 (519)
|...|++++|...|+
T Consensus 89 ~~~~g~~~~A~~~~~ 103 (164)
T 3sz7_A 89 RFDMADYKGAKEAYE 103 (164)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHccCHHHHHHHHH
Confidence 666666666666555
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00019 Score=55.32 Aligned_cols=94 Identities=12% Similarity=-0.026 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLL 382 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 382 (519)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 455566666777777777777777766542 2255566666667777777777777777776643 23456666777777
Q ss_pred HHcCCHHHHHHHHHhC
Q 044422 383 GRAGLLEEARDFIKQM 398 (519)
Q Consensus 383 ~~~g~~~~A~~~~~~~ 398 (519)
...|++++|.+.+++.
T Consensus 83 ~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 7777777777776654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0018 Score=60.66 Aligned_cols=131 Identities=10% Similarity=0.007 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-CHHHHHHHHccCC---CCChhHHHHHHHHHHhc-C-ChHHHHHHHH
Q 044422 152 RGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR-VIIDAYKVFEEMP---VRNVVSWTAIIAAFAQE-W-QVDMCLELYR 225 (519)
Q Consensus 152 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~-~-~~~~a~~~~~ 225 (519)
++|.++++.++... +-+..+|+.--..+...| ++++++.+++.+. ..+..+|+.-.-++.+. + ++++++++++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 35666666665553 223344555555555555 3666666666654 23444555554444444 4 5666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCch--------HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 044422 226 MMRNSMLEPNDFTFTSILSACTGSGALG--------QGRSAHCQTIRMGFFSYIQVANSLISMYCKCG 285 (519)
Q Consensus 226 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 285 (519)
++.+.. +-|...|+.-.-.+.+.|.++ ++.+.++.+.+.. +.|...|+-....+.+.+
T Consensus 150 k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 150 GSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTST
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence 665543 224445544444444433333 5555555555543 334444544444444444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00015 Score=55.99 Aligned_cols=21 Identities=5% Similarity=-0.094 Sum_probs=7.9
Q ss_pred HHHHHHHccCCchHHHHHHHH
Q 044422 241 SILSACTGSGALGQGRSAHCQ 261 (519)
Q Consensus 241 ~ll~~~~~~g~~~~a~~~~~~ 261 (519)
.+..++...|++++|...++.
T Consensus 77 ~~a~~~~~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 77 RKAAALEFLNRFEEAKRTYEE 97 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 333333333333333333333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00046 Score=67.62 Aligned_cols=163 Identities=9% Similarity=-0.023 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-----CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHH
Q 044422 274 ANSLISMYCKCGNVEEAVYVFNNMHG-----KDI----VSWNSMIAGYAQHGLAVRAIDLFEEMMK----QRVKPD-AIT 339 (519)
Q Consensus 274 ~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~t 339 (519)
+..+...|.+.|++++|.+.+..+.+ ++. ...+.+-..+...|+.++|..+++.... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 45566667777777777776665542 111 1222333334456778888888776653 233333 456
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc--CCC--c-CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCCHHHHHH
Q 044422 340 FLGVISSCRHGGLVEEGKVYFDSMAKH--GLK--P-ELDHYSCVVDLLGRAGLLEEARDFIKQMP-----IYPNAVIWEA 409 (519)
Q Consensus 340 ~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ 409 (519)
+..+...+...|++++|..+++.+... +.. + ....+..++..|...|++++|..++++.. +..+...
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--- 214 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT--- 214 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH---
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH---
Confidence 777888889999999999998887632 211 1 24577888899999999999999887651 0001000
Q ss_pred HHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 410 AESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 410 ~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
-...+..++..+...|++++|...|.+..+
T Consensus 215 ----------~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 215 ----------VAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp ----------HHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 013556678888889999999888777643
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00017 Score=60.14 Aligned_cols=97 Identities=8% Similarity=-0.047 Sum_probs=85.2
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044422 269 SYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVIS 345 (519)
Q Consensus 269 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 345 (519)
.+...+..+...+.+.|++++|...|++..+ .+...|..+..+|.+.|++++|...|++..+.. +-+...|..+..
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567888999999999999999999998764 377889999999999999999999999998864 235778889999
Q ss_pred HHHccCCHHHHHHHHHHHHHc
Q 044422 346 SCRHGGLVEEGKVYFDSMAKH 366 (519)
Q Consensus 346 ~~~~~g~~~~a~~~~~~m~~~ 366 (519)
++...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999863
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=5.2e-05 Score=59.72 Aligned_cols=95 Identities=12% Similarity=-0.024 Sum_probs=73.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCC
Q 044422 340 FLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPE 419 (519)
Q Consensus 340 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 419 (519)
+..+...+.+.|++++|...+++..+.. +-+...|..+..++...|++++|...+++ +++++|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~---------------al~l~P~ 83 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNH---------------ARMLDPK 83 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------HHHHCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH---------------HHHhCCC
Confidence 3445566778888888888888888743 33677778888888888888888887663 4677788
Q ss_pred CchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 420 CAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 420 ~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
++.++..|..+|...|++++|...+++..+.
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 84 DIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888899999999999888887654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00012 Score=59.97 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=8.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 044422 205 TAIIAAFAQEWQVDMCLELYRM 226 (519)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~ 226 (519)
..+..++...|++++|+..|++
T Consensus 59 ~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 59 LGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 3333333333333333333333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00038 Score=56.32 Aligned_cols=95 Identities=7% Similarity=-0.011 Sum_probs=60.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 044422 301 DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD----AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYS 376 (519)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 376 (519)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4455666666666677777777777766653 344 4556666666667777777777777766532 22455666
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC
Q 044422 377 CVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~~ 398 (519)
.+..+|...|++++|...+++.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 6667777777777777666543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00019 Score=56.67 Aligned_cols=24 Identities=4% Similarity=-0.002 Sum_probs=9.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 044422 305 WNSMIAGYAQHGLAVRAIDLFEEM 328 (519)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m 328 (519)
|..+..++...|++++|...|++.
T Consensus 75 ~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 75 YIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHH
Confidence 333333333444444444444333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00022 Score=57.75 Aligned_cols=99 Identities=5% Similarity=-0.173 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 044422 336 DAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE----LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAE 411 (519)
Q Consensus 336 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~ 411 (519)
+...+..+...+...|+++.|...|++..+. .|+ ...+..+...|...|++++|...+++.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------------- 91 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKA------------- 91 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHH-------------
Confidence 5667888888999999999999999999874 465 678888999999999999999988754
Q ss_pred HhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 412 SRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 412 ~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
+...|.++.++..+..+|...|++++|...|++..+..
T Consensus 92 --~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 92 --IEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp --HHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred --HhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 45577778888889999999999999999999987753
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00014 Score=72.06 Aligned_cols=131 Identities=11% Similarity=0.020 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKP--------------DAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK 369 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--------------~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 369 (519)
.|..+...+.+.|++++|...|++..+..... ....|..+..++.+.|++++|...+++..+.. +
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 34444445555555555555555554421110 14677778888888999999999999888753 3
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHH-HHHHHH
Q 044422 370 PELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAAR-VRKLMK 448 (519)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~-~~~~m~ 448 (519)
.+...|..+..+|...|++++|...|++. ++++|.+..++..+..++.+.|++++|.+ .++.|.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~a---------------l~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKV---------------LEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888899999999999998877644 56777888888889999999998888774 556654
Q ss_pred HC
Q 044422 449 DK 450 (519)
Q Consensus 449 ~~ 450 (519)
..
T Consensus 414 ~k 415 (457)
T 1kt0_A 414 KK 415 (457)
T ss_dssp --
T ss_pred hh
Confidence 43
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.86 E-value=9.1e-05 Score=60.99 Aligned_cols=134 Identities=13% Similarity=0.034 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCc-CHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRV-KPD----AITFLGVISSCRHGGLVEEGKVYFDSMAKH----GLKP-ELD 373 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~ 373 (519)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+. +-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455666666777777777777766554211 011 135666777788888888888888877642 1111 144
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC----CCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 374 HYSCVVDLLGRAGLLEEARDFIKQMP----IYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
.+..+...+...|++++|.+.+++.- ...+. +.....+..+...|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR-------------IGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch-------------HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 67778888999999999999887651 00111 11134677789999999999999999998765
Q ss_pred C
Q 044422 450 K 450 (519)
Q Consensus 450 ~ 450 (519)
.
T Consensus 158 ~ 158 (164)
T 3ro3_A 158 I 158 (164)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00018 Score=58.39 Aligned_cols=87 Identities=10% Similarity=-0.020 Sum_probs=34.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 044422 207 IIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN 286 (519)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 286 (519)
+...+.+.|++++|...|++..... +.+...|..+..++...|++++|...++...+.. +.+...+..+..+|...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3334444444444444444443322 1233333344444444444444444444444332 2223333333333444444
Q ss_pred HHHHHHHHH
Q 044422 287 VEEAVYVFN 295 (519)
Q Consensus 287 ~~~a~~~~~ 295 (519)
+++|...|+
T Consensus 102 ~~~A~~~~~ 110 (142)
T 2xcb_A 102 LDGAESGFY 110 (142)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444433333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00041 Score=67.99 Aligned_cols=25 Identities=8% Similarity=-0.107 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMR 228 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~ 228 (519)
+..+...|...|++++|.+.+....
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555666666666666666665553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00013 Score=55.80 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 044422 173 GSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEP--NDFTFTSILSACT 247 (519)
Q Consensus 173 ~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~~~ 247 (519)
+..+...+.+.|++++|...|++.. ..+...|..+..++...|++++|...|++..+.. +. +...+..+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHH
Confidence 3334444444444444444444332 1233334444444444444444444444443322 11 2333444444444
Q ss_pred cc-CCchHHHHHHHHHH
Q 044422 248 GS-GALGQGRSAHCQTI 263 (519)
Q Consensus 248 ~~-g~~~~a~~~~~~~~ 263 (519)
.. |++++|.+.+....
T Consensus 88 ~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAK 104 (112)
T ss_dssp TCSSCSHHHHHHHHHHG
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 44 44444444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00027 Score=56.10 Aligned_cols=22 Identities=9% Similarity=0.146 Sum_probs=9.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 044422 308 MIAGYAQHGLAVRAIDLFEEMM 329 (519)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m~ 329 (519)
+..++...|++++|++.|++..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00021 Score=56.77 Aligned_cols=101 Identities=12% Similarity=0.107 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 044422 273 VANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR--VKPD----AITFLGV 343 (519)
Q Consensus 273 ~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~t~~~l 343 (519)
.+..+...+.+.|++++|+..|++..+ .+...|+.+..+|.+.|++++|+..+++..+.. ..++ ..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344455555555555555555554432 244555556666666666666666666554421 1111 1245555
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCcCHHHH
Q 044422 344 ISSCRHGGLVEEGKVYFDSMAKHGLKPELDHY 375 (519)
Q Consensus 344 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 375 (519)
..++...|++++|.+.|++..+. .|+....
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 55666667777777777666652 3454443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00033 Score=55.99 Aligned_cols=61 Identities=5% Similarity=-0.134 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
.|..+...+...|++++|...|++..... +.+...+..+..++...|++++|...++...+
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE 71 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33333444444444444444444333322 11233333333334444444444444433333
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00016 Score=57.12 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=10.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 306 NSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 306 ~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
..+..++...|++++|...|++..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3333344444444444444444433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00016 Score=57.02 Aligned_cols=93 Identities=10% Similarity=-0.011 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC--C-C-------hhHHH
Q 044422 136 SFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV--R-N-------VVSWT 205 (519)
Q Consensus 136 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~-------~~~~~ 205 (519)
..+..+...+...|+++.|...+....+.. +.+...+..+...+...|++++|...|++... | + ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344455555556666666666666665543 33444555555555555666655555555431 1 1 33444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 044422 206 AIIAAFAQEWQVDMCLELYRMMRN 229 (519)
Q Consensus 206 ~li~~~~~~~~~~~a~~~~~~m~~ 229 (519)
.+..++...|++++|...|++...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 555555555555555555555544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.74 E-value=7.9e-05 Score=74.22 Aligned_cols=118 Identities=9% Similarity=0.029 Sum_probs=71.9
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHH
Q 044422 311 GYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEE 390 (519)
Q Consensus 311 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 390 (519)
.+.+.|++++|.+.+++..+.. +-+...+..+..++.+.|++++|...+++..+.. +-+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3455667777777777666542 2245666666677777777777777777776642 2345566667777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHH--HhccCCHHHHHHHHH
Q 044422 391 ARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANL--YAGVRCWDQAARVRK 445 (519)
Q Consensus 391 A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~g~~~~A~~~~~ 445 (519)
|.+.+++. ++++|.+..++..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~a---------------l~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETV---------------VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHH---------------HHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77666533 44556666666666655 666677777777666
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00014 Score=59.74 Aligned_cols=24 Identities=0% Similarity=-0.254 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMM 227 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m 227 (519)
+..+...+...|++++|...+++.
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~a 35 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQR 35 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344444444445555555544444
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0077 Score=56.05 Aligned_cols=180 Identities=8% Similarity=0.009 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCC-hHHHHHHHH
Q 044422 253 GQGRSAHCQTIRMGFFSYIQVANSLISMYCKCG--NVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGL-AVRAIDLFE 326 (519)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~ 326 (519)
+++..+++.+.... +-+..+|+.-.-.+.+.+ .+++++.+++.+.+ .|..+|+.-.-.+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 34444555444432 334444444444444444 25556665555543 344555555555555555 466666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcc--------------CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHc-------
Q 044422 327 EMMKQRVKPDAITFLGVISSCRHG--------------GLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRA------- 385 (519)
Q Consensus 327 ~m~~~~~~p~~~t~~~ll~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~------- 385 (519)
++.+..+. |...|+.....+.+. +.++++.+.+....... +-|...|+-+--.+.+.
T Consensus 170 ~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 170 SLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccc
Confidence 66665433 445554444433332 34666777777766532 33555555443333333
Q ss_pred ----CCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHH---HHHhccCCHHHHHHHHHHHHHC
Q 044422 386 ----GLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLA---NLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 386 ----g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~---~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
+.++++.+.++ ++++++|++...+..++ .+....|..+++...+.++++.
T Consensus 248 ~~~~~~l~~el~~~~---------------elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 248 VEKSTVLQSELESCK---------------ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHH---------------HHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH---------------HHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 22344444443 33455555543333322 2333467777888888877653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.72 E-value=4e-05 Score=59.88 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=50.5
Q ss_pred cCCHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHH
Q 044422 350 GGLVEEGKVYFDSMAKHG--LKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQL 427 (519)
Q Consensus 350 ~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L 427 (519)
.|++++|...|++..+.+ -+-+...+..+..+|...|++++|...+++. +++.|.++.++..+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a---------------l~~~p~~~~~~~~l 67 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANG---------------VKQFPNHQALRVFY 67 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCCCchHHHHHH
Confidence 455666666666666532 1223445566666666777777776666533 45556666666667
Q ss_pred HHHHhccCCHHHHHHHHHHHHHC
Q 044422 428 ANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
..+|...|++++|...+++..+.
T Consensus 68 ~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 68 AMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777776666554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00024 Score=55.82 Aligned_cols=92 Identities=9% Similarity=-0.077 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCK 283 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (519)
+..+...+.+.|++++|...|++..+.. +-+...+..+..++...|++++|...++...+.. +.+...+..+..+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3334445555555555555555554432 2234445555555555555555555555555443 2334444445555555
Q ss_pred cCCHHHHHHHHHhc
Q 044422 284 CGNVEEAVYVFNNM 297 (519)
Q Consensus 284 ~~~~~~a~~~~~~~ 297 (519)
.|++++|...|++.
T Consensus 98 ~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 98 EHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 55555555555443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00057 Score=53.91 Aligned_cols=91 Identities=10% Similarity=0.021 Sum_probs=49.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCcCH---HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCC
Q 044422 344 ISSCRHGGLVEEGKVYFDSMAKHGLKPEL---DHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPEC 420 (519)
Q Consensus 344 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 420 (519)
...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...+++. +...|++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~---------------~~~~p~~ 72 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDL---------------VSRYPTH 72 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTS
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHH---------------HHHCCCC
Confidence 334455566666666666555422 1111 34455556666666666666655543 2333444
Q ss_pred ---chhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 421 ---AATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 421 ---~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
+.++..++.+|...|++++|...|++..+.
T Consensus 73 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 73 DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555666666666666666666666554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00043 Score=56.60 Aligned_cols=98 Identities=11% Similarity=-0.058 Sum_probs=72.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCcC-------------HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 044422 343 VISSCRHGGLVEEGKVYFDSMAKHGLKPE-------------LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA 409 (519)
Q Consensus 343 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 409 (519)
....+.+.|++++|...|++..+.. |+ ...|..+..++.+.|++++|...+++.- ..
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL--------~l 86 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL--------HY 86 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------Hh
Confidence 3344555566666666666655421 22 2388889999999999999999887551 12
Q ss_pred HHHhhhcCCCCchhH----HHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 410 AESRLLLEPECAATH----VQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 410 ~~~~~~~~~~~~~~~----~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
+.+..+++|++..+| .....++...|++++|+..|++..+.
T Consensus 87 ~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 87 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344556699999999 99999999999999999999998654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0092 Score=55.53 Aligned_cols=247 Identities=9% Similarity=0.024 Sum_probs=115.1
Q ss_pred cCCChh-hHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC----------HHHHHHHHccCC---CCChhHHHHHHHHHH
Q 044422 147 STRNIR-GGAPYQCLAIRTGFIANVYVGSSLITLYSKCRV----------IIDAYKVFEEMP---VRNVVSWTAIIAAFA 212 (519)
Q Consensus 147 ~~~~~~-~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~---~~~~~~~~~li~~~~ 212 (519)
+.|.+. +|..+++.++... +-+..+|+.--..+...+. +++++.+++.+. +.+..+|+.-.-++.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 444444 5666666666543 2222334433333322222 345555555543 234445555444444
Q ss_pred hcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-chHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH
Q 044422 213 QEW--QVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGA-LGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEE 289 (519)
Q Consensus 213 ~~~--~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 289 (519)
+.+ .+++++.+++++.+.. +-|...|+.-.-.+...|. ++++.+.++.+.+.. +.|...|+-....+.+.+....
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccc
Confidence 544 2556666666655543 2344455544444445554 255555555555543 3344444433333322210000
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----------CCHHHHHH
Q 044422 290 AVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG-----------GLVEEGKV 358 (519)
Q Consensus 290 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-----------g~~~~a~~ 358 (519)
+ ++ .+-...+.++++++.+....... +-|...|+.+-..+.+. +.++++.+
T Consensus 198 ~---------~~--------~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 198 S---------GP--------QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp ----------------------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred c---------cc--------ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 0 00 00000033566777777666543 22555555444444433 45778888
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHH-----HHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHh
Q 044422 359 YFDSMAKHGLKPELDHYSCVVDLL-----GRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYA 432 (519)
Q Consensus 359 ~~~~m~~~~~~p~~~~~~~li~~~-----~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 432 (519)
.++++.+. .|+. .|..+-.++ ...|..+++... +.++.+++|.....|..|...+.
T Consensus 260 ~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~---------------l~~l~~~Dp~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 260 SCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQY---------------FSTLKAVDPMRAAYLDDLRSKFL 320 (331)
T ss_dssp HHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHH---------------HHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHH---------------HHHHHHhCcchhhHHHHHHHHHH
Confidence 88888873 4554 333211111 122333333333 44556777777777766655443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00036 Score=57.93 Aligned_cols=65 Identities=18% Similarity=0.111 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 371 ELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 371 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
+...|..+..+|.+.|++++|...++. ++.++|.++.+|..++.+|...|++++|...|++..+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~---------------al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSE---------------VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHH---------------HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHH---------------HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 346788899999999999999987774 46778999999999999999999999999999998775
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0004 Score=66.57 Aligned_cols=90 Identities=8% Similarity=-0.061 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhc
Q 044422 337 AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLL 416 (519)
Q Consensus 337 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~ 416 (519)
...|..+..++.+.|++++|...+++..+.. +-+...|..+..+|...|++++|.+.+++. +++
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~A---------------l~l 336 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKA---------------QEI 336 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHH---------------HHh
Confidence 3456666666777777777777777776532 224556666777777777777777665533 455
Q ss_pred CCCCchhHHHHHHHHhccCCHHHHHH
Q 044422 417 EPECAATHVQLANLYAGVRCWDQAAR 442 (519)
Q Consensus 417 ~~~~~~~~~~L~~~~~~~g~~~~A~~ 442 (519)
+|.+...+..|..++...++.+++.+
T Consensus 337 ~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 337 APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666665544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00038 Score=69.29 Aligned_cols=114 Identities=10% Similarity=-0.041 Sum_probs=54.1
Q ss_pred HHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHH
Q 044422 180 YSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGR 256 (519)
Q Consensus 180 ~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 256 (519)
+.+.|++++|++.|++.. +.+..+|..+..+|.+.|++++|+..+++..+.. +-+...+..+..++...|++++|.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344455555555554433 2234455555555555555555555555555542 223445555555555556666666
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 044422 257 SAHCQTIRMGFFSYIQVANSLISM--YCKCGNVEEAVYVFN 295 (519)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 295 (519)
+.+++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 95 ~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555442 2222233333333 555566666666665
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00023 Score=67.37 Aligned_cols=149 Identities=11% Similarity=-0.019 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044422 271 IQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG 350 (519)
Q Consensus 271 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 350 (519)
...+..+...+.+.|++++|...|++..+-+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 44566677777777888888887776543111110 1112223333322221 12677788889999
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHH
Q 044422 351 GLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANL 430 (519)
Q Consensus 351 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 430 (519)
|++++|...+++..+.. +.+...|..+..+|...|++++|...|++. ++++|.+..++..|...
T Consensus 244 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a---------------l~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKA---------------QKYAPDDKAIRRELRAL 307 (338)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHT---------------TC---------------
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHHCCCCHHHHHHHHHH
Confidence 99999999999988753 336778888999999999999999988876 34455555566666666
Q ss_pred -HhccCCHHHHHHHHHHHHHC
Q 044422 431 -YAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 431 -~~~~g~~~~A~~~~~~m~~~ 450 (519)
....+..+.+...|+.|...
T Consensus 308 ~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 308 AEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHhhCC
Confidence 34456677888888887654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0021 Score=50.51 Aligned_cols=89 Identities=12% Similarity=0.019 Sum_probs=55.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC----HHHHHHHH
Q 044422 307 SMIAGYAQHGLAVRAIDLFEEMMKQRVKPDA---ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE----LDHYSCVV 379 (519)
Q Consensus 307 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li 379 (519)
.+...+...|++++|...|++..+.... +. ..+..+..++...|++++|...++...+.. |+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHH
Confidence 3445566677777777777776654211 12 355556666777777777777777776532 22 45566667
Q ss_pred HHHHHcCCHHHHHHHHHhC
Q 044422 380 DLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~~ 398 (519)
.++...|++++|...++.+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 7777777777777776654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.001 Score=65.99 Aligned_cols=133 Identities=12% Similarity=-0.044 Sum_probs=94.9
Q ss_pred HHHHcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHH-----cC-CCc-CHHHHH
Q 044422 311 GYAQHGLAVRAIDLFEEMMKQ---RVKPD----AITFLGVISSCRHGGLVEEGKVYFDSMAK-----HG-LKP-ELDHYS 376 (519)
Q Consensus 311 ~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~-~~p-~~~~~~ 376 (519)
.+...|++++|..++++..+. -+.|+ ..+++.|..+|...|++++|..++++..+ .| -.| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455778899998888876652 12232 45788888999999999999999888764 22 123 345688
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhc-CCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 377 CVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLL-EPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
.|...|...|++++|..++++.- ...++.+.. +|....+...|..++...|++++|..+++++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al--------~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAY--------AILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH--------HHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH--------HHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998761 111111111 11222355678899999999999999999998754
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0011 Score=65.43 Aligned_cols=121 Identities=4% Similarity=-0.141 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCCchHHHHHHHHHHHcC
Q 044422 201 VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPN--------------DFTFTSILSACTGSGALGQGRSAHCQTIRMG 266 (519)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 266 (519)
...|..+...+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|...++...+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44666677777777888888877777765321110 3445555555555555555555555555543
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHH
Q 044422 267 FFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAI 322 (519)
Q Consensus 267 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 322 (519)
+.+...|..+..+|...|++++|...|++..+ .+...+..+..++.+.++.+++.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555554432 12334444444444444444433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00085 Score=64.27 Aligned_cols=117 Identities=9% Similarity=-0.074 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCCC-------------------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 044422 172 VGSSLITLYSKCRVIIDAYKVFEEMPV-------------------RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSML 232 (519)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~~~~m~~-------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 232 (519)
.+..+...+.+.|++++|+..|++... .+...|+.+..+|.+.|++++|+..+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 455666667777777777776665432 123455555666666666666666666665532
Q ss_pred CCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 044422 233 EPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEA 290 (519)
Q Consensus 233 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 290 (519)
+-+...+..+..++...|++++|...++...+.. +.+...+..+..++.+.++.+++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2234555555666666666666666666555543 23444445555555444444444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.43 E-value=0.017 Score=57.43 Aligned_cols=202 Identities=8% Similarity=0.035 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHH-HHHHc
Q 044422 116 VEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDA-YKVFE 194 (519)
Q Consensus 116 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~ 194 (519)
.+++..+|+++... .+.+...|...+..+.+.|+++.|..+++..+.. +.+...+.. |+...+.++. ..+.+
T Consensus 195 ~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~ 267 (493)
T 2uy1_A 195 ESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHH
Confidence 45667788887764 3445777777777788888899999999988887 333333322 2221111111 11111
Q ss_pred cCC------------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHccCCchHHHHHHH
Q 044422 195 EMP------------VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTS--ILSACTGSGALGQGRSAHC 260 (519)
Q Consensus 195 ~m~------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~g~~~~a~~~~~ 260 (519)
... ......|...+....+.++.+.|..+|++. ... ..+...|.. .+.... .++.+.|..+|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife 344 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFS 344 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHH
Confidence 110 001133444455555555666666666665 211 122223321 111111 224666666666
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044422 261 QTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMM 329 (519)
Q Consensus 261 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (519)
...+.- +.+...+...++...+.|+.+.|..+|+.+.+ ....|...+..=...|+.+.+..+++++.
T Consensus 345 ~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 345 SGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555532 22233344445555555556666666655532 33444444444344455555544444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00027 Score=55.03 Aligned_cols=84 Identities=12% Similarity=-0.071 Sum_probs=53.2
Q ss_pred cCCChhhHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHH
Q 044422 147 STRNIRGGAPYQCLAIRTG--FIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCL 221 (519)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~ 221 (519)
..|++++|...|+..++.+ -+.+..++..+..+|.+.|++++|+..|++.. +.+...+..+..++.+.|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3467777777777776653 12244567777777777777777777777664 234566677777777777777777
Q ss_pred HHHHHHHHC
Q 044422 222 ELYRMMRNS 230 (519)
Q Consensus 222 ~~~~~m~~~ 230 (519)
..|++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766553
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00092 Score=63.19 Aligned_cols=142 Identities=8% Similarity=-0.056 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044422 171 YVGSSLITLYSKCRVIIDAYKVFEEMPV--RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG 248 (519)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 248 (519)
..+..+...+.+.|++++|...|++... |+... +...++.+++...+. ...|..+..++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 3455666666677777777776666442 22111 112222222222110 1256677777778
Q ss_pred cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHH-HHHcCChHHHHHH
Q 044422 249 SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK---DIVSWNSMIAG-YAQHGLAVRAIDL 324 (519)
Q Consensus 249 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~-~~~~g~~~~A~~~ 324 (519)
.|++++|...++...+.. +.+...|..+..+|...|++++|...|+...+- +...+..+... ....+..+++...
T Consensus 243 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887777654 445677777777777777777777777777542 23344444333 2233445556666
Q ss_pred HHHHHH
Q 044422 325 FEEMMK 330 (519)
Q Consensus 325 ~~~m~~ 330 (519)
|..|..
T Consensus 322 ~~~~l~ 327 (338)
T 2if4_A 322 YKGIFK 327 (338)
T ss_dssp ------
T ss_pred HHHhhC
Confidence 666654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0066 Score=61.59 Aligned_cols=170 Identities=10% Similarity=0.047 Sum_probs=117.3
Q ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHhcCC---CChhHHHHHHHHHHHcC--
Q 044422 252 LGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN----------VEEAVYVFNNMHG---KDIVSWNSMIAGYAQHG-- 316 (519)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g-- 316 (519)
.++|.+.++.+.+.. +-+..+|+.--.++.+.|+ ++++++.++.+.+ .+..+|+.-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 345566666666554 3344455544444444444 7777777777654 35667777777777788
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHc----------
Q 044422 317 LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGG-LVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRA---------- 385 (519)
Q Consensus 317 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---------- 385 (519)
+++++++.++++.+...+ +...|+.-..++.+.| .++++.+.++++.+.. +-+...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccc
Confidence 669999999999887544 6777877777777778 8888899988888754 33677777766666653
Q ss_pred ----CCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHH
Q 044422 386 ----GLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQ 439 (519)
Q Consensus 386 ----g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~ 439 (519)
+.++++. ..+.+++.++|.+..+|..+...+.+.+++++
T Consensus 202 ~~~~~~~~eel---------------~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKEL---------------ELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHH---------------HHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHH---------------HHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 2233333 34456788999999999999999999888554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0017 Score=53.69 Aligned_cols=95 Identities=12% Similarity=0.015 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhC-------C----------CChHHHHHHHHHHHHhCCCHHHHHHHHccCC
Q 044422 135 ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTG-------F----------IANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197 (519)
Q Consensus 135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-------~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 197 (519)
...+......+.+.|+++.|...|...++.- - +.+..+|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3445666677778888888888888776640 0 1122344444444444455554444444432
Q ss_pred ---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044422 198 ---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRN 229 (519)
Q Consensus 198 ---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 229 (519)
+.+...|..+..+|...|++++|...|++...
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 22333444444444444444444444444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00094 Score=66.22 Aligned_cols=62 Identities=5% Similarity=-0.098 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMK-----QRV-KPD-AITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
+++.|...|...|++++|..++++..+ .|. .|+ ..+.+.+-.++...+.+++|..++..+++
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555554432 121 111 12233444445555666666666666553
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0051 Score=50.20 Aligned_cols=61 Identities=10% Similarity=0.036 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C-----C-----HHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNSMLE-P-----N-----DFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p-----~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
+......+.+.|++++|+..|++..+.... | + ...|..+..++.+.|++++|...++...+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455566666677777766666553211 0 1 22556666666666666666666655554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0075 Score=48.33 Aligned_cols=109 Identities=9% Similarity=-0.063 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHh----CCCHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSK----CRVIIDAY 190 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 190 (519)
+.++|++.|++..+.| .|+.. +-..|...+.++.|...|....+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 6777788887777776 22322 4455555566777777777777665 45556666666665 56666666
Q ss_pred HHHccCC-CCChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 044422 191 KVFEEMP-VRNVVSWTAIIAAFAQ----EWQVDMCLELYRMMRNSM 231 (519)
Q Consensus 191 ~~~~~m~-~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g 231 (519)
++|++.. ..++.++..|...|.. .++.++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666554 2445555556666655 566666666666665554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0031 Score=48.52 Aligned_cols=79 Identities=10% Similarity=0.041 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccC
Q 044422 356 GKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVR 435 (519)
Q Consensus 356 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g 435 (519)
+...+++..+.. +.+...+..+...|...|++++|...+++. +.++|.+..+|..+..+|...|
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------l~~~p~~~~~~~~la~~~~~~g 67 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAA---------------LDFDPTYSVAWKWLGKTLQGQG 67 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH---------------HHHCCCcHHHHHHHHHHHHHcC
Confidence 445555555432 234556666666777777777776665533 3455666666666777777777
Q ss_pred CHHHHHHHHHHHHHC
Q 044422 436 CWDQAARVRKLMKDK 450 (519)
Q Consensus 436 ~~~~A~~~~~~m~~~ 450 (519)
++++|...|++..+.
T Consensus 68 ~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 68 DRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777766543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0005 Score=52.49 Aligned_cols=60 Identities=12% Similarity=0.041 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++...+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344444444444444444444443322 12333444444444444444444444444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0023 Score=47.98 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=58.3
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 370 PELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
-+...+..+...|...|++++|...|++. ++++|.++.+|..+..+|...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEEL---------------VETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35677888999999999999999988754 677899999999999999999999999999998876
Q ss_pred C
Q 044422 450 K 450 (519)
Q Consensus 450 ~ 450 (519)
.
T Consensus 70 l 70 (100)
T 3ma5_A 70 V 70 (100)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0007 Score=51.65 Aligned_cols=94 Identities=6% Similarity=0.034 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC-------HHH
Q 044422 302 IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE-------LDH 374 (519)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-------~~~ 374 (519)
...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 4456667777888888888888888877653 235667777777888888888888888888763 344 445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 375 YSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+..+..++...|+.++|.+.++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHh
Confidence 555666666666666555554444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0047 Score=44.81 Aligned_cols=57 Identities=11% Similarity=0.194 Sum_probs=28.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIK 396 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (519)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34444444555555555555555554432 2234444555555555555555555444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0083 Score=43.44 Aligned_cols=77 Identities=12% Similarity=0.127 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMY 281 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (519)
.|..+...+...|++++|...|++..... +.+...+..+..++...|++++|...++...+.. +.+...+..+..++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34444455555555555555555554432 2234444555555555555555555555554442 22333444443333
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.023 Score=45.44 Aligned_cols=108 Identities=9% Similarity=-0.016 Sum_probs=53.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHHHH
Q 044422 216 QVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCK----CGNVEEAV 291 (519)
Q Consensus 216 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~ 291 (519)
++++|+..|++..+.| .|+.. |...|...+.+++|.+.|+...+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 33333 4444555555555666666665543 33444444445544 44555555
Q ss_pred HHHHhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHC
Q 044422 292 YVFNNMHG-KDIVSWNSMIAGYAQ----HGLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 292 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 331 (519)
+.|++..+ .++..+..|...|.. .++.++|...|++..+.
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 55544332 233444444444444 44444444444444444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0066 Score=46.62 Aligned_cols=75 Identities=9% Similarity=-0.037 Sum_probs=34.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 044422 220 CLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNN 296 (519)
Q Consensus 220 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 296 (519)
|+..|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+..+|...|++++|...|+.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444443332 2234444445555555555555555555544433 23344444455555555555555554443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0074 Score=58.80 Aligned_cols=126 Identities=16% Similarity=0.136 Sum_probs=87.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc---CCCc----CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhh-h
Q 044422 344 ISSCRHGGLVEEGKVYFDSMAKH---GLKP----ELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRL-L 415 (519)
Q Consensus 344 l~~~~~~g~~~~a~~~~~~m~~~---~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~-~ 415 (519)
+..+...|++++|..++++..+. -+.| ...+++.+...|...|++++|+.++++.- ...++.+ .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L--------~i~~~~lg~ 365 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM--------EPYRIFFPG 365 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------HHHHHHSCS
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--------HhHHHHcCC
Confidence 44566778999999999888742 1222 34678889999999999999999998761 1111111 1
Q ss_pred cCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCCeeEEEEEcCEEEEEEecCCcCcChhhHHHHHHHHHHHHH
Q 044422 416 LEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMK 495 (519)
Q Consensus 416 ~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 495 (519)
-+|.-..+++.|...|...|++++|..++++..+--.. ..+..||.+.+....+.+...+|+
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 12223457888999999999999999999987543100 012257888888888887777765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.01 Score=43.73 Aligned_cols=70 Identities=17% Similarity=0.036 Sum_probs=56.3
Q ss_pred CcCHHHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHH
Q 044422 369 KPELDHYSCVVDLLGRAGL---LEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRK 445 (519)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~ 445 (519)
+.+...+..+..++...++ .++|..+++ ++++++|.++.+...|...+...|++++|+..|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~---------------~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~ 67 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLE---------------QALQLEPYNEAALSLIANDHFISFRFQEAIDTWV 67 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHH---------------HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH---------------HHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566777777777765544 566666554 5689999999999999999999999999999999
Q ss_pred HHHHCCCC
Q 044422 446 LMKDKGLK 453 (519)
Q Consensus 446 ~m~~~g~~ 453 (519)
++.+....
T Consensus 68 ~~l~~~p~ 75 (93)
T 3bee_A 68 LLLDSNDP 75 (93)
T ss_dssp HHHTCCCT
T ss_pred HHHhhCCC
Confidence 99987644
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0024 Score=52.01 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=70.3
Q ss_pred HccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHH---HHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhH
Q 044422 348 RHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLE---EARDFIKQMPIYPNAVIWEAAESRLLLEPECAATH 424 (519)
Q Consensus 348 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 424 (519)
.+.+.+++|.+.++...+.. +-+...|..+..++...++++ +|++.+++. ...++++++++|++..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eA--------i~~le~AL~ldP~~~~A~ 83 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEA--------ITKFEEALLIDPKKDEAV 83 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH--------HHHHHHHHHHCTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHH--------HHHHHHHHHhCcCcHHHH
Confidence 34566788888888888754 346777777777777776554 333333322 245567899999999999
Q ss_pred HHHHHHHhccC-----------CHHHHHHHHHHHHHCC
Q 044422 425 VQLANLYAGVR-----------CWDQAARVRKLMKDKG 451 (519)
Q Consensus 425 ~~L~~~~~~~g-----------~~~~A~~~~~~m~~~g 451 (519)
..|..+|...| ++++|++.|++..+..
T Consensus 84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 99999999875 8999999999998753
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.14 Score=51.85 Aligned_cols=164 Identities=6% Similarity=-0.027 Sum_probs=103.4
Q ss_pred HHHHHHHccCC---CCChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--C
Q 044422 187 IDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQ----------VDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG--A 251 (519)
Q Consensus 187 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~ 251 (519)
++|++.++++. +.+..+|+.--.++...++ ++++++.++++.+.. +-+..+|..-.-.+.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccccc
Confidence 34455555544 1233344444444444444 677777777776654 235566666666666777 5
Q ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHhcCCC---ChhHHHHHHHHHHHc------------
Q 044422 252 LGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCG-NVEEAVYVFNNMHGK---DIVSWNSMIAGYAQH------------ 315 (519)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~------------ 315 (519)
++++.+.++.+.+.. +-+...|+--..++.+.| .++++.+.++++.+. |..+|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 125 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred HHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence 577777777777765 456666766666666777 778888888877653 556777666665553
Q ss_pred --CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 044422 316 --GLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLV 353 (519)
Q Consensus 316 --g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 353 (519)
+.++++++.+++..... +-|...|..+-..+.+.++.
T Consensus 204 ~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred cHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 45688888888877653 22566777766666666653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.13 Score=54.60 Aligned_cols=156 Identities=12% Similarity=0.084 Sum_probs=99.7
Q ss_pred HHHHhcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 044422 209 AAFAQEWQVDMCLE-LYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNV 287 (519)
Q Consensus 209 ~~~~~~~~~~~a~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 287 (519)
......+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+. +. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCH
Confidence 34455777877766 4411 1 1122236677777778888877765521 11 113345678899
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 044422 288 EEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHG 367 (519)
Q Consensus 288 ~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 367 (519)
+.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+.....|
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99998887664 567899999999999999999999988742 3444555555777776666655555544
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 044422 368 LKPELDHYSCVVDLLGRAGLLEEARDFIKQMP 399 (519)
Q Consensus 368 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 399 (519)
. ++.-..+|.+.|++++|.+++.+++
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 1 3334445666777777777666653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.01 Score=57.69 Aligned_cols=93 Identities=12% Similarity=0.014 Sum_probs=66.9
Q ss_pred ccCCHHHHHHHHHHHHH---cCCCc----CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhh-cCCCC
Q 044422 349 HGGLVEEGKVYFDSMAK---HGLKP----ELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLL-LEPEC 420 (519)
Q Consensus 349 ~~g~~~~a~~~~~~m~~---~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~ 420 (519)
..|++++|..++++..+ .-+.| ...+++.|..+|...|++++|..++++.- ...++.+. -+|+-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL--------~i~~~~lG~~Hp~~ 381 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII--------KPYSKHYPVYSLNV 381 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHHHHHSCSSCHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH--------HHHHHHcCCCChHH
Confidence 45788888888888764 11222 24678899999999999999999998761 11111111 12233
Q ss_pred chhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 421 AATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 421 ~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
..+|+.|+..|...|++++|..++++..+
T Consensus 382 a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 382 ASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 45788899999999999999999998754
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.02 Score=42.74 Aligned_cols=60 Identities=8% Similarity=-0.018 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHH
Q 044422 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQT 262 (519)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 262 (519)
..|..+..+|.+.|++++|+..|++..+.. +-+...|..+..++...|++++|...++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444444444332 112233444444444444444444444433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0053 Score=50.03 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=29.1
Q ss_pred HHHHHHccCC---CCChhHHHHHHHHHHhc-----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044422 188 DAYKVFEEMP---VRNVVSWTAIIAAFAQE-----------WQVDMCLELYRMMRNSMLEPNDFTFTSILS 244 (519)
Q Consensus 188 ~A~~~~~~m~---~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 244 (519)
+|+..|++.. +.+..+|+.+..+|... |++++|++.|++..+. .|+...|...+.
T Consensus 64 eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 64 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 4555544443 12334455555555444 4677777777777663 565555544443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.35 Score=51.17 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=24.4
Q ss_pred HhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 044422 181 SKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMM 227 (519)
Q Consensus 181 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 227 (519)
...|+++.|.++.+.+. +...|..+...+.+.++++.|.++|.++
T Consensus 663 l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44555555555554442 3345555555555555555555555554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.072 Score=51.78 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=70.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHH-----cC-CCc-CHHH
Q 044422 309 IAGYAQHGLAVRAIDLFEEMMKQR---VKPD----AITFLGVISSCRHGGLVEEGKVYFDSMAK-----HG-LKP-ELDH 374 (519)
Q Consensus 309 i~~~~~~g~~~~A~~~~~~m~~~~---~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~-~~p-~~~~ 374 (519)
+..+.+.|++++|..++++..+.. +.|+ ..+++.+..+|...|++++|..++++..+ .| -.| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667889999999998887642 3333 45788899999999999999999998774 22 123 3456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 375 YSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
++.|...|...|++++|..++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 888999999999999999999876
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.021 Score=55.53 Aligned_cols=61 Identities=8% Similarity=-0.098 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQ-----R-VKPD-AITFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
+++.+..+|...|++++|..++++..+. | -.|+ ..+++.|...|...|++++|..++++..
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4455555555555555555555544321 1 1111 2345555555555666666555555544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.15 Score=40.98 Aligned_cols=82 Identities=12% Similarity=-0.018 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcC---CHHHHHHHHHhCCCCCCHHHHHHHHHhhhcC-C-CCchhHHHH
Q 044422 353 VEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAG---LLEEARDFIKQMPIYPNAVIWEAAESRLLLE-P-ECAATHVQL 427 (519)
Q Consensus 353 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~-~-~~~~~~~~L 427 (519)
...+.+-|.+..+.|. ++..+...+..++++++ +++++..++++. ++.+ | .+...+..|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~l---------------l~~~~p~~~rd~lY~L 77 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEEL---------------LPKGSKEEQRDYVFYL 77 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH---------------HHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH---------------HhcCCccchHHHHHHH
Confidence 3444445555444442 55555555666666666 444555555543 1112 2 123345556
Q ss_pred HHHHhccCCHHHHHHHHHHHHHC
Q 044422 428 ANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
..+|.+.|++++|.+.++...+.
T Consensus 78 Av~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 78 AVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhc
Confidence 77777777777777777777663
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.18 Score=47.27 Aligned_cols=64 Identities=5% Similarity=-0.060 Sum_probs=30.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc
Q 044422 200 NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRM 265 (519)
Q Consensus 200 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 265 (519)
+..+|.++...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.++.....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34444444444444455555555555554432 44444444444444555555555555444443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.24 E-value=1.1 Score=37.04 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=76.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 044422 279 SMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKV 358 (519)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 358 (519)
+...+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.. | |..+.-.|...|+.++..+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D---~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQH------S---FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------C---HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------C---HHHHHHHHHHhCCHHHHHH
Confidence 4456788888888888776 467789999999999999999999988863 2 3444555666788777666
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 044422 359 YFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP 399 (519)
Q Consensus 359 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 399 (519)
+-+.....| -++.-...+...|+++++.+++.+.+
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 655555544 15556666777899999999998886
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.073 Score=39.11 Aligned_cols=58 Identities=9% Similarity=0.076 Sum_probs=35.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCchHHHHHHHHHHHcC
Q 044422 208 IAAFAQEWQVDMCLELYRMMRNSMLEPNDF-TFTSILSACTGSGALGQGRSAHCQTIRMG 266 (519)
Q Consensus 208 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 266 (519)
...+.+.|++++|...|++..+.. +.+.. .+..+..++...|++++|...++...+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345566667777777776666543 22344 56666666666777777777776666653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.76 Score=35.74 Aligned_cols=83 Identities=10% Similarity=-0.064 Sum_probs=58.3
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHH
Q 044422 184 RVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTI 263 (519)
Q Consensus 184 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 263 (519)
|++......+-.+. .+....+..++.+..+|+-+.-.+++..+.. +.+|+......+..+|.+.|+..++.+++.+.-
T Consensus 75 ~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 75 QNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp SCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 33444433333332 2344566777888888888888888888544 246777788888889999999999999888888
Q ss_pred HcCCC
Q 044422 264 RMGFF 268 (519)
Q Consensus 264 ~~~~~ 268 (519)
+.|++
T Consensus 153 ~kG~k 157 (172)
T 1wy6_A 153 KKGEK 157 (172)
T ss_dssp HTTCH
T ss_pred HhhhH
Confidence 88854
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.34 Score=45.38 Aligned_cols=73 Identities=5% Similarity=0.018 Sum_probs=49.5
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 044422 300 KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYS 376 (519)
Q Consensus 300 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 376 (519)
.+..+|..+...+...|++++|...++++...+ |+...|..+-..+.-.|++++|...+++.... .|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 355666666666666677777777777777654 66666666666677777777777777777763 46665554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.78 E-value=1.1 Score=34.87 Aligned_cols=140 Identities=12% Similarity=0.021 Sum_probs=82.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 044422 212 AQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAV 291 (519)
Q Consensus 212 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 291 (519)
.-.|..++..++..+.... .+..-||-+|--....-+-+-..++++.+-+. .|. ..+|++..+.
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 3456666666666665442 23444555555544444444444444433221 221 2344555555
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 044422 292 YVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK 369 (519)
Q Consensus 292 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 369 (519)
..+-.+.. +..-.+..++.+...|+-+.-.+++.++.. +.+|+....-.+..+|.+.|+..++.+++.+..+.|++
T Consensus 82 ~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55444433 333455666777778888888888777543 34667777777788888888888888888888877754
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.17 Score=37.05 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=40.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 044422 308 MIAGYAQHGLAVRAIDLFEEMMKQRVKPDAI-TFLGVISSCRHGGLVEEGKVYFDSMAKH 366 (519)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 366 (519)
....+.+.|++++|...+++..+.. +.+.. .+..+..++...|++++|...|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445667788888888888777653 22445 6677777777888888888888887764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.26 Score=39.58 Aligned_cols=79 Identities=11% Similarity=0.056 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHHcCCHHHHH
Q 044422 318 AVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGG---LVEEGKVYFDSMAKHGLKP--ELDHYSCVVDLLGRAGLLEEAR 392 (519)
Q Consensus 318 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 392 (519)
...+.+.|.+..+.|. ++..+...+..++++.+ +++++..+++...+.. .| ....+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4566677777766654 67777777888888888 6779999999998754 34 3555666788889999999999
Q ss_pred HHHHhC
Q 044422 393 DFIKQM 398 (519)
Q Consensus 393 ~~~~~~ 398 (519)
++++.+
T Consensus 92 ~y~~~l 97 (152)
T 1pc2_A 92 KYVRGL 97 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999876
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.01 E-value=0.43 Score=35.55 Aligned_cols=63 Identities=8% Similarity=0.050 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc------CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 336 DAITFLGVISSCRHGGLVEEGKVYFDSMAKH------GLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 336 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+..-+..|...+...|+++.|...++...+. .-.+....+..+..+|.+.|++++|..++++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4445667777888888899888888887642 11245677889999999999999999988765
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.32 E-value=0.0016 Score=62.34 Aligned_cols=244 Identities=14% Similarity=0.080 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044422 170 VYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGS 249 (519)
Q Consensus 170 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 249 (519)
+.+|+.|..+..+.+++.+|++.|=+ ..|+..|..+|.+..+.|.+++-+..+...++..-.|... +.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHHHHHhh
Confidence 34666777777777777666655532 3455667777777777777777777775555443333333 4677777777
Q ss_pred CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC------------------------CChhHH
Q 044422 250 GALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG------------------------KDIVSW 305 (519)
Q Consensus 250 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~~ 305 (519)
++..+.++++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.||
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 77666544331 24444455666667777777777766665542 367889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHc
Q 044422 306 NSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRA 385 (519)
Q Consensus 306 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 385 (519)
..+-.+|...+.+.-|.-.--.+. +.||. ...++..|...|.+++...+++.-... -.....+|+-|.-.|++-
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 999999999988877765544433 22221 234566677788888777777665532 134667778777777765
Q ss_pred CCHHHHHHHHHhC----CCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHH
Q 044422 386 GLLEEARDFIKQM----PIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAAR 442 (519)
Q Consensus 386 g~~~~A~~~~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ 442 (519)
+.++.++.++.. .+..-.... .....|..|+-.|+.-..|+.|..
T Consensus 277 -~PeKlmEHlklf~sriNipKvirac-----------E~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 277 -KPQKMREHLELFWSRVNIPKVLRAA-----------EQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp -CTTHHHHHHTTSSSSSCCTTTHHHH-----------TTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHH-----------HHHhhHHHHHHHHhcchhHHHHHH
Confidence 355555554433 211111100 123455556666776677766654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.90 E-value=0.88 Score=33.79 Aligned_cols=63 Identities=6% Similarity=-0.134 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNS------MLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRM 265 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 265 (519)
.+..|...+.+.++++.|...|+...+. +-.+....+..|..++.+.|+++.|...++.+.+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3445555666666666666666555432 01223445556666666666666666666666554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.74 E-value=0.72 Score=41.44 Aligned_cols=85 Identities=11% Similarity=0.071 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHHc-----CCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCC-chh
Q 044422 353 VEEGKVYFDSMAKHGLKPE---LDHYSCVVDLLGRA-----GLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPEC-AAT 423 (519)
Q Consensus 353 ~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~ 423 (519)
...|...+++..+ +.|+ ...|..+...|.+. |+.++|.+.|++ +++++|.. ..+
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fer---------------AL~LnP~~~id~ 241 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEH---------------LTRYCSAHDPDH 241 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHH---------------HHHHCCTTCSHH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHH---------------HHHhCCCCCchH
Confidence 5667777777777 4566 66888999999984 999999998874 47888864 888
Q ss_pred HHHHHHHHhcc-CCHHHHHHHHHHHHHCCCCC
Q 044422 424 HVQLANLYAGV-RCWDQAARVRKLMKDKGLKT 454 (519)
Q Consensus 424 ~~~L~~~~~~~-g~~~~A~~~~~~m~~~g~~~ 454 (519)
+..+...++.. |++++|.+.+++........
T Consensus 242 ~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 242 HITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999995 99999999999999987663
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.47 E-value=0.85 Score=33.17 Aligned_cols=27 Identities=11% Similarity=-0.021 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
+...+...+.+.|++++|...|+++.+
T Consensus 45 A~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 45 ALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333333444444444444444444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.00 E-value=2.5 Score=30.63 Aligned_cols=88 Identities=11% Similarity=-0.040 Sum_probs=67.4
Q ss_pred CChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044422 149 RNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMR 228 (519)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 228 (519)
...++|..|-+++...|- ...+--+-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778888888877663 33344444567788999999999999999999999988755 48899999998888888
Q ss_pred HCCCCCCHHHHHH
Q 044422 229 NSMLEPNDFTFTS 241 (519)
Q Consensus 229 ~~g~~p~~~t~~~ 241 (519)
.+| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 777 666666643
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=91.87 E-value=2.7 Score=30.52 Aligned_cols=88 Identities=10% Similarity=-0.028 Sum_probs=66.8
Q ss_pred CChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044422 149 RNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMR 228 (519)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 228 (519)
...++|..|-+++...|- ...+--+-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778888888777663 33344444567788999999999999999999999988755 47888888888888887
Q ss_pred HCCCCCCHHHHHH
Q 044422 229 NSMLEPNDFTFTS 241 (519)
Q Consensus 229 ~~g~~p~~~t~~~ 241 (519)
..| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 777 666666543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.79 E-value=6 Score=32.52 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=89.4
Q ss_pred HHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 044422 244 SACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAID 323 (519)
Q Consensus 244 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 323 (519)
......|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|..... +..+.-.|.-.|+.++..+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHH
Confidence 4456778888888887655 4677899999999999999999999987764 3444445666778777776
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 044422 324 LFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP 399 (519)
Q Consensus 324 ~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 399 (519)
+-+.....|- ++.....+...|+++++.++|.+. |.-|.... .....|-.+.|.++.+.++
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~------~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYA------VAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHH------HHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHH------HHHHcCcHHHHHHHHHHhC
Confidence 6666555542 455555666789999998887554 32232211 1223567888888888875
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.68 E-value=1.7 Score=33.45 Aligned_cols=84 Identities=11% Similarity=0.031 Sum_probs=58.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHHcCCCc--CHHHHHHHHHHHHHcCC
Q 044422 313 AQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEE---GKVYFDSMAKHGLKP--ELDHYSCVVDLLGRAGL 387 (519)
Q Consensus 313 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~ 387 (519)
.....+..+.+.|.+....|. |+..+-..+..++.+...... +..+++.+.+.+ .| .....-.|.-++.+.|+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhh
Confidence 333445566666666655454 677776777778888877655 888888887754 23 33444557778999999
Q ss_pred HHHHHHHHHhC
Q 044422 388 LEEARDFIKQM 398 (519)
Q Consensus 388 ~~~A~~~~~~~ 398 (519)
+++|.++++.+
T Consensus 90 Y~~A~~~~~~l 100 (126)
T 1nzn_A 90 YEKALKYVRGL 100 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998876
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.63 E-value=4.7 Score=31.02 Aligned_cols=89 Identities=10% Similarity=-0.079 Sum_probs=61.6
Q ss_pred HccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHH---HHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhH
Q 044422 348 RHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEE---ARDFIKQMPIYPNAVIWEAAESRLLLEPECAATH 424 (519)
Q Consensus 348 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 424 (519)
.....+..+.+-|......|. ++..+-..+..+++++++... +..+++++--.-+.. ..-...
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~-------------~~Rd~l 77 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-------------EQRDYV 77 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH-------------HHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-------------hHHHHH
Confidence 334445566666766666553 778887778899999887666 777777662111010 112345
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 425 VQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 425 ~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
..|..++.+.|+|++|.+.++.+.+.
T Consensus 78 Y~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 78 FYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 56899999999999999999999875
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=89.72 E-value=0.022 Score=54.73 Aligned_cols=253 Identities=9% Similarity=0.059 Sum_probs=164.2
Q ss_pred cchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHHHH
Q 044422 43 KSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLISM 122 (519)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 122 (519)
++++.|.++-+... ...+|..+-++.+..+ ......+.+.+.........+.......+ .+++-+..
T Consensus 39 ~~ldRa~eyA~~~n-------~p~VWs~LgkAqL~~~----~v~eAIdsyIkA~Dps~y~eVi~~A~~~~--~~edLv~y 105 (624)
T 3lvg_A 39 GNLDRAYEFAERCN-------EPAVWSQLAKAQLQKG----MVKEAIDSYIKADDPSSYMEVVQAANTSG--NWEELVKY 105 (624)
T ss_dssp CCSTTTTTSSSSCC-------CCCCSSSHHHHTTTSS----SCTTTTTSSCCCSCCCSSSHHHHHTTTSS--CCTTHHHH
T ss_pred cccHHHHHHHHHhC-------CccHHHHHHHHHHccC----chHHHHHHHHhCCChHHHHHHHHHHHhCC--CHHHHHHH
Confidence 44455554444443 2234555555544332 22222333333333333455666665554 67777777
Q ss_pred HHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC-----
Q 044422 123 HHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP----- 197 (519)
Q Consensus 123 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----- 197 (519)
+...++..- ++..=+.|+-+|++.+++.+.++++. .||..-...+.+-|...|.++.|.-+|..+.
T Consensus 106 L~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akL 176 (624)
T 3lvg_A 106 LQMARKKAR--ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRL 176 (624)
T ss_dssp HHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTT
T ss_pred HHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHH
Confidence 665554422 44455678889999988876555442 4677677778888888899988888888775
Q ss_pred -------------------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHH
Q 044422 198 -------------------VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSA 258 (519)
Q Consensus 198 -------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 258 (519)
..++.||-.+-.+|...+.+.-|.-.--...- .|| -...++.-|-..|.+++...+
T Consensus 177 AstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsL 251 (624)
T 3lvg_A 177 ASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITM 251 (624)
T ss_dssp SSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHH
Confidence 13788999999999999998877655433332 222 233567778889999999888
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----C-------ChhHHHHHHHHHHHcCChHHHHHH
Q 044422 259 HCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG----K-------DIVSWNSMIAGYAQHGLAVRAIDL 324 (519)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~~ 324 (519)
++.-.... .....+|+-|.-.|+|- ++++..+.++.... | ....|..++-.|++-.+++.|...
T Consensus 252 lEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 252 LEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred HHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 88776432 46788999999888876 45666665554332 2 556789999999999998877543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.30 E-value=4.6 Score=38.35 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-----HcCCCcCHHH
Q 044422 305 WNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA-----KHGLKPELDH 374 (519)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~ 374 (519)
...++..+...|++.+|...+..+.... +.+...+..++.++.+.|+..+|.+.|+.+. +.|+.|+..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3344455555555555555555554432 3355555555555555566555555555543 2355555443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.34 E-value=22 Score=34.36 Aligned_cols=50 Identities=8% Similarity=0.050 Sum_probs=30.0
Q ss_pred CChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 215 WQVDMCLELYRMMRN-----SMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 215 ~~~~~a~~~~~~m~~-----~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
|+++.|++.+..+.+ .+..........++..|...|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 566777666655432 22344455666677777777777776666655543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.34 E-value=5.8 Score=28.98 Aligned_cols=63 Identities=11% Similarity=0.077 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLIT 178 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (519)
|.=++.+-++.+....+.|++......+++|.+.+++..|..+++-++..- .....+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 444566667777777888999999999999999999999999998775542 333456766654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=86.73 E-value=4.4 Score=36.40 Aligned_cols=66 Identities=15% Similarity=0.070 Sum_probs=33.6
Q ss_pred HHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCC
Q 044422 304 SWNSMIAGYAQ-----HGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG-GLVEEGKVYFDSMAKHGLK 369 (519)
Q Consensus 304 ~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~ 369 (519)
.|..+...|.+ -|+.++|.+.|++..+.+..-+..++....+.++.. |+.+.+.+.+++.......
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 45555555555 256666666666655532211234444444555553 5566666666666554433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.19 E-value=4.2 Score=29.71 Aligned_cols=63 Identities=11% Similarity=0.172 Sum_probs=44.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 044422 317 LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVD 380 (519)
Q Consensus 317 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 380 (519)
+..++.+-++.+....+.|+.......+.+|.+.+++..|.++++-++.. ..+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 45566777777777778888888888888888888888888888877732 1233445666654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.58 E-value=4 Score=38.76 Aligned_cols=78 Identities=9% Similarity=0.012 Sum_probs=46.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCCHHHHHHHHH
Q 044422 341 LGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM--------PIYPNAVIWEAAES 412 (519)
Q Consensus 341 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~~~~ 412 (519)
..++..+...|+++.+...+..+.... +.+...|..+|.+|.++|+..+|.+.|+.+ ++.|+..+-.....
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 344555666677777666666665432 335556666777777777777766665543 56666666655555
Q ss_pred hhhcCCC
Q 044422 413 RLLLEPE 419 (519)
Q Consensus 413 ~~~~~~~ 419 (519)
.+.-+|.
T Consensus 254 il~~~~~ 260 (388)
T 2ff4_A 254 ILRQQPL 260 (388)
T ss_dssp HHTTCCC
T ss_pred HHcCCCC
Confidence 5544443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.91 E-value=3.8 Score=42.41 Aligned_cols=54 Identities=17% Similarity=0.063 Sum_probs=43.4
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHH
Q 044422 379 VDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLM 447 (519)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 447 (519)
.+-|...|+++.|+++-+ +++...|.+..+|..|..+|...|+|+.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak---------------~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSN---------------TSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHH---------------HHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHH---------------HHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344566788888887665 445667777788888999999999999999999886
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.40 E-value=25 Score=32.29 Aligned_cols=167 Identities=10% Similarity=-0.014 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHH
Q 044422 172 VGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLEL----YRMMRNSMLEPNDFTFTSILSACT 247 (519)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 247 (519)
.|.++..-|.+.+++++|++++-. -...+.+.|+...+-++ ++-..+.++++|..+...|+..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456667778899999999987643 23455666776555444 456667788899988888888887
Q ss_pred ccCCchH-HHHHHHH----HHHcC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHH
Q 044422 248 GSGALGQ-GRSAHCQ----TIRMG--FFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVR 320 (519)
Q Consensus 248 ~~g~~~~-a~~~~~~----~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 320 (519)
....-+- =..+++. -.+.| -.-+......+...|.+.+++.+|...|-.-.++++..|..++..+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~- 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH- 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG-
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc-
Confidence 7654321 1223333 33333 23467788889999999999999999885322233456655554444433321
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 321 AIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 321 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
.+|...-..++ -|...+++..|..+++...
T Consensus 185 -------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 185 -------------TAPLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 11222222333 3555678888888776655
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=84.20 E-value=8.7 Score=30.57 Aligned_cols=97 Identities=10% Similarity=0.207 Sum_probs=63.7
Q ss_pred CChhHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHH----HHHHHHH---HHHccCCHHHHHHHHHHHHHc
Q 044422 300 KDIVSWNSMIAGYAQHGLA------VRAIDLFEEMMKQRVKPDAI----TFLGVIS---SCRHGGLVEEGKVYFDSMAKH 366 (519)
Q Consensus 300 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~----t~~~ll~---~~~~~g~~~~a~~~~~~m~~~ 366 (519)
.|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|..|-- .+...+++++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4667777777777777887 7777888877664 555421 1111110 122347888888888888754
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 367 GLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 367 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+-.- ...|-...+--.++|++..|.+++...
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3222 666766777777889999998888764
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=83.47 E-value=41 Score=34.04 Aligned_cols=267 Identities=10% Similarity=0.005 Sum_probs=146.9
Q ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 044422 156 PYQCLAIRTG-FIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEP 234 (519)
Q Consensus 156 ~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 234 (519)
++-..+.+.. .+.....-+..+..+++.+++.....++.. ...+...-.....+....|+..+|......+-..| ..
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~ 134 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KS 134 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CC
Confidence 3443444433 233334556667778888999988887776 44455555667778888888888877777776655 23
Q ss_pred CHHHHHHHHHHHHccCCchHH--HHHHHHHHHcC-----------CCCcHH-HHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 044422 235 NDFTFTSILSACTGSGALGQG--RSAHCQTIRMG-----------FFSYIQ-VANSLISMYCKCGNVEEAVYVFNNMHGK 300 (519)
Q Consensus 235 ~~~t~~~ll~~~~~~g~~~~a--~~~~~~~~~~~-----------~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~ 300 (519)
....+..++..+.+.|.+... ..=+..+...| ++++.. ....++..+.+ ...+....... .+
T Consensus 135 ~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~ 210 (618)
T 1qsa_A 135 QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-GA 210 (618)
T ss_dssp CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-CC
T ss_pred CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc-CC
Confidence 344567777777766655432 22222222222 112211 11222222221 12222222221 12
Q ss_pred Chh---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHccCCHHHHHHHHHHHHHcCCCcCHH
Q 044422 301 DIV---SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFL----GVISSCRHGGLVEEGKVYFDSMAKHGLKPELD 373 (519)
Q Consensus 301 ~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~----~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 373 (519)
+.. .+...+.-+.+ .+.+.|...|....+.. ..+..... .+.......+...++...+....... ++..
T Consensus 211 ~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 286 (618)
T 1qsa_A 211 TDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTS 286 (618)
T ss_dssp CHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHH
T ss_pred ChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChH
Confidence 221 11222333334 37899999998886543 22333222 22223334452455666666654432 4444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHH
Q 044422 374 HYSCVVDLLGRAGLLEEARDFIKQMPIYP-NAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
...-.+....+.|+++.|...|+.|...+ +..-|. .=+..++...|+.++|..+|+...
T Consensus 287 ~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~----------------YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 287 LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWR----------------YWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHH----------------HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHH----------------HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44555555667899999999999996322 112222 225778888999999999988864
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.47 E-value=11 Score=27.42 Aligned_cols=85 Identities=14% Similarity=0.067 Sum_probs=59.6
Q ss_pred CchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 251 ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-++- -.+.|-.+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHh
Confidence 45777777777777663 4444444556677888899999888888888888887664 4577888888777777776
Q ss_pred CCCCCCHHHH
Q 044422 331 QRVKPDAITF 340 (519)
Q Consensus 331 ~~~~p~~~t~ 340 (519)
+| .|....|
T Consensus 97 sg-~p~~q~F 105 (115)
T 2uwj_G 97 SS-DPALADF 105 (115)
T ss_dssp CS-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 3333333
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.26 E-value=32 Score=37.87 Aligned_cols=144 Identities=10% Similarity=-0.007 Sum_probs=98.4
Q ss_pred HHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC----------------------
Q 044422 243 LSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK---------------------- 300 (519)
Q Consensus 243 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------------------- 300 (519)
+..+...+..+-+.++... ++.+....-.+..+|..+|++++|.++|.+....
T Consensus 819 ~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 819 VEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3344444555544443322 2334444456778899999999999999876421
Q ss_pred ----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCH
Q 044422 301 ----DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDA----ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPEL 372 (519)
Q Consensus 301 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 372 (519)
-..-|..++..+-+.|.++.+.++-....+..-+-+. ..|..+++++...|++++|...+-.+.+... -.
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~ 971 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KK 971 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HH
Confidence 0123677888888999999999888776654222121 2577889999999999999999988876543 45
Q ss_pred HHHHHHHHHHHHcCCHHHHHH
Q 044422 373 DHYSCVVDLLGRAGLLEEARD 393 (519)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~ 393 (519)
..+..|+..+|..|..+.-..
T Consensus 972 ~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp HHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHhCCChhhhhC
Confidence 677888888888888766544
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=83.00 E-value=11 Score=27.35 Aligned_cols=78 Identities=13% Similarity=0.065 Sum_probs=55.9
Q ss_pred CchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 251 ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-++-. .+.|-.+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777777663 44444445566778888888888888888888888877643 567777777777767766
Q ss_pred CC
Q 044422 331 QR 332 (519)
Q Consensus 331 ~~ 332 (519)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 65
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.53 E-value=36 Score=32.80 Aligned_cols=187 Identities=10% Similarity=0.010 Sum_probs=103.7
Q ss_pred CCHHHHHHHHccCC-----C----CChhHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCch
Q 044422 184 RVIIDAYKVFEEMP-----V----RNVVSWTAIIAAFAQEWQVDMCLELYRMMRN-SMLEPNDFTFTSILSACTGSGALG 253 (519)
Q Consensus 184 g~~~~A~~~~~~m~-----~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~ 253 (519)
|+++.|++.+-.+. . ........++..|...++++...+.+.-+.. +|..+.. ...++..+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~------ 101 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVM------ 101 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHH------
Confidence 67888887765543 1 2345677889999999999998877765543 3322222 222222211
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHHcCChHHHHHHHH
Q 044422 254 QGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK-------DIVSWNSMIAGYAQHGLAVRAIDLFE 326 (519)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~ 326 (519)
+.+.... .++..+...++.... ...+. .......|...+...|++.+|.+++.
T Consensus 102 ------~~l~~~~-~~d~~~~~~~i~~l~-------------~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~ 161 (445)
T 4b4t_P 102 ------EYLKSSK-SLDLNTRISVIETIR-------------VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILC 161 (445)
T ss_dssp ------HHHHHHC-TTHHHHHHHHHHCCS-------------SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ------HHHhcCC-chhHHHHHHHHHHHH-------------HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 1111111 112222221111110 00110 11223456677777888888888887
Q ss_pred HHHHC--CCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHH----cCCCcC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 044422 327 EMMKQ--RVKPD---AITFLGVISSCRHGGLVEEGKVYFDSMAK----HGLKPE--LDHYSCVVDLLGRAGLLEEARDFI 395 (519)
Q Consensus 327 ~m~~~--~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~ 395 (519)
.+... |.... ...+...++.|...+++.+|..++.++.. ....|+ ...+...+..+...+++.+|...|
T Consensus 162 ~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 162 ELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYL 241 (445)
T ss_dssp HHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77542 22111 23455667778888888888888887642 222222 234566777777888888887777
Q ss_pred HhC
Q 044422 396 KQM 398 (519)
Q Consensus 396 ~~~ 398 (519)
.+.
T Consensus 242 ~e~ 244 (445)
T 4b4t_P 242 QEI 244 (445)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=81.79 E-value=41 Score=37.07 Aligned_cols=81 Identities=7% Similarity=0.034 Sum_probs=37.3
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHH
Q 044422 239 FTSILSACTGSGALGQGRSAHCQTIRMGFFSY----IQVANSLISMYCKCGNVEEAVYVFNNMHGK--DIVSWNSMIAGY 312 (519)
Q Consensus 239 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~ 312 (519)
|..++..+-+.+.++.+.++-....+..-+.+ ...|..+.+.+...|++++|...+-.+... -......++..+
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~l 981 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQL 981 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 44455555555555555555444443221111 114455555555556655555555444321 123344455555
Q ss_pred HHcCChH
Q 044422 313 AQHGLAV 319 (519)
Q Consensus 313 ~~~g~~~ 319 (519)
|..|..+
T Consensus 982 ce~~~~~ 988 (1139)
T 4fhn_B 982 TKQGKIN 988 (1139)
T ss_dssp HHHCCHH
T ss_pred HhCCChh
Confidence 5544433
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.57 E-value=11 Score=29.11 Aligned_cols=63 Identities=11% Similarity=0.063 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLIT 178 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (519)
|.=+...-++.+...++.|++......+++|.+.+|+..|..+|+-++.. ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 44455666666777778889999999999999999999999998877554 2334556766654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=81.07 E-value=32 Score=31.23 Aligned_cols=167 Identities=10% Similarity=0.008 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHH
Q 044422 172 VGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLE----LYRMMRNSMLEPNDFTFTSILSACT 247 (519)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~t~~~ll~~~~ 247 (519)
.|.++..-|.+.+++++|++++.. -...+.+.|+...|-+ +++...+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 566777778889999999887653 2345566777666555 4566667788999988888888876
Q ss_pred ccCCc-----hHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc---CC
Q 044422 248 GSGAL-----GQGRSAHCQTIRMGF--FSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQH---GL 317 (519)
Q Consensus 248 ~~g~~-----~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~---g~ 317 (519)
....- +-..+.+.+-.+.|- .-+......+...|.+.+++.+|...|-.-...+...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 64322 222333444444432 246788999999999999999999988733323455565555544443 43
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 318 AVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 318 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
..++-- ..-..++ -|...+++..|..+++...
T Consensus 184 ~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 333211 1112222 3445788888888888665
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=80.71 E-value=39 Score=31.92 Aligned_cols=125 Identities=12% Similarity=0.055 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--------CChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHH---
Q 044422 273 VANSLISMYCKCGNVEEAVYVFNNMHG--------KDIVSWNSMIAGYAQHGL-AVRAIDLFEEMMKQRVKPDAITF--- 340 (519)
Q Consensus 273 ~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~t~--- 340 (519)
....|...|.+.|+.++..+++..... ........+++.+....+ .+.-.++..+..+..- -+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 445566667777777777766666543 122344556665554322 3333333333322110 011122
Q ss_pred ---HHHHHHHHccCCHHHHHHHHHHHHHc--CCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 341 ---LGVISSCRHGGLVEEGKVYFDSMAKH--GLKP---ELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 341 ---~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
..+...|...|++.+|.+++..+.+. .... -..+|-.-++.|...|++.++...+...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 24667777888888888777777642 1111 1233455566777788888887777655
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.28 E-value=8.5 Score=29.81 Aligned_cols=63 Identities=11% Similarity=0.172 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 044422 317 LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVD 380 (519)
Q Consensus 317 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 380 (519)
+..+..+-++.+....+.|+.......+.+|.+.+++..|.++|+-++.. ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 45566777777777788889999999999999999999999999888742 2344556776654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 519 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 6e-05
Identities = 37/247 (14%), Positives = 81/247 (32%), Gaps = 28/247 (11%)
Query: 215 WQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGS-GALGQGRSAHCQTIRMGFFSYIQV 273
+ ++ +PN S L + G + + + + +++
Sbjct: 147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-DPNFLDA 205
Query: 274 ANSLISMYCKCGNVEEAVYVFNNMHGKDIV---SWNSMIAGYAQHGLAVRAIDLFEEMMK 330
+L ++ + + AV + ++ Y + GL AID + ++
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265
Query: 331 QRVK-PDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLE 389
+ PDA L + G V E + ++ A D + + ++ G +E
Sbjct: 266 LQPHFPDAYCNLANA--LKEKGSVAEAEDCYN-TALRLCPTHADSLNNLANIKREQGNIE 322
Query: 390 EARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449
EA ++ L + PE AA H LA++ +A
Sbjct: 323 EAVRLYRKA---------------LEVFPEFAAAHSNLASVLQQQGKLQEALM----HYK 363
Query: 450 KGLKTNP 456
+ ++ +P
Sbjct: 364 EAIRISP 370
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 519 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.82 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.8 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.49 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.39 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.01 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.94 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.89 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.84 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.82 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.82 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.78 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.74 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.7 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.58 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.43 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.33 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.3 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.24 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.21 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.19 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.16 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.09 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.02 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.0 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.97 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.97 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.87 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.86 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.81 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.73 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.64 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.54 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.47 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.4 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.39 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.38 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.37 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.34 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.26 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.23 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.21 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.16 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.16 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.11 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.01 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.76 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.55 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.49 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.45 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.44 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.34 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.06 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 95.91 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.39 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.01 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.5 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.07 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.24 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.65 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.17 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 84.99 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 83.52 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=4.8e-17 Score=156.03 Aligned_cols=315 Identities=14% Similarity=0.130 Sum_probs=253.9
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
++++|++.|+++.+.. +-+...+..+...+.+.|++++|...++.+++.. +-+..++..+..+|.+.|++++|...+.
T Consensus 14 ~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~ 91 (388)
T d1w3ba_ 14 DFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYR 91 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccccccc
Confidence 8999999999998763 3367788888999999999999999999998875 4467789999999999999999999988
Q ss_pred cCCC---C----------------------------------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 044422 195 EMPV---R----------------------------------NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDF 237 (519)
Q Consensus 195 ~m~~---~----------------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 237 (519)
.... . ...............+....+...+.+..... +-+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 170 (388)
T d1w3ba_ 92 HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAV 170 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchhH
Confidence 7642 1 11223333444445556666666666655443 33566
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHH
Q 044422 238 TFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQ 314 (519)
Q Consensus 238 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 314 (519)
.+..+...+...|+.+.|...++...+.. +.+...+..+...+...|++++|...++...+ .+...+..+...+.+
T Consensus 171 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 249 (388)
T d1w3ba_ 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHH
Confidence 77788888899999999999999888764 45677888999999999999999999987653 466778888899999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 044422 315 HGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDF 394 (519)
Q Consensus 315 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 394 (519)
.|++++|...|++..+.. +-+..++..+...+...|++++|...++...... +.+...+..+...+...|++++|.+.
T Consensus 250 ~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 327 (388)
T d1w3ba_ 250 QGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp TTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHH
Confidence 999999999999988763 2256778888889999999999999999888653 56777888899999999999999988
Q ss_pred HHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 395 IKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 395 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
+++. ++++|+++.++..++.+|...|++++|.+.|++..+.
T Consensus 328 ~~~a---------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 328 YRKA---------------LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHH---------------TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHH---------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8754 5667778888999999999999999999999998764
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.1e-16 Score=153.42 Aligned_cols=338 Identities=12% Similarity=0.081 Sum_probs=261.2
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHH
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLI 120 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 120 (519)
+.|++++|...++.+.+.. +.+...+..+-..+...+ ++++|+
T Consensus 11 ~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~-----------------------------------~~~~A~ 53 (388)
T d1w3ba_ 11 QAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCR-----------------------------------RLDRSA 53 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT-----------------------------------CHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC-----------------------------------CHHHHH
Confidence 6799999999999886322 223444554444554454 888999
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHH-------------------------
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSS------------------------- 175 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~------------------------- 175 (519)
..|++..+.. +-+..++..+...+.+.|++++|...+....+.... +......
T Consensus 54 ~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (388)
T d1w3ba_ 54 HFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 9998887754 335678888888888899999998888888776422 2222211
Q ss_pred ---------HHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044422 176 ---------LITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSIL 243 (519)
Q Consensus 176 ---------li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 243 (519)
........+....+...+.... +.+...+..+...+...|++++|...+++..... +-+...+..+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 210 (388)
T d1w3ba_ 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLG 210 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHh
Confidence 2222223333334444333332 2356678888899999999999999999987753 33567888999
Q ss_pred HHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHH
Q 044422 244 SACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVR 320 (519)
Q Consensus 244 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 320 (519)
..+...|++++|...++...... +.+...+..+...+.+.|++++|...|++..+ .+..+|..+...+...|++++
T Consensus 211 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 289 (388)
T d1w3ba_ 211 NVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHH
T ss_pred hhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999998876 55677888899999999999999999997643 366789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 044422 321 AIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPI 400 (519)
Q Consensus 321 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 400 (519)
|...++..... .+.+...+..+...+...|++++|...+++..+.. +-+..++..+...|.+.|++++|.+.|++
T Consensus 290 A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~--- 364 (388)
T d1w3ba_ 290 AEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKE--- 364 (388)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHH---
T ss_pred HHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH---
Confidence 99999998775 35577888889999999999999999999998743 23567788899999999999999988764
Q ss_pred CCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCC
Q 044422 401 YPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRC 436 (519)
Q Consensus 401 ~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~ 436 (519)
+++++|.++.+|..|+.+|.+.|+
T Consensus 365 ------------al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 365 ------------AIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp ------------HHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred ------------HHHhCCCCHHHHHHHHHHHHHcCC
Confidence 467888888999999999988875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=3.2e-12 Score=119.11 Aligned_cols=225 Identities=10% Similarity=0.010 Sum_probs=151.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 044422 208 IAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNV 287 (519)
Q Consensus 208 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 287 (519)
...+.+.|++++|+..|++..+.. +-+..+|..+..++...|++++|...+....+.. +-+...+..+...|...|++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence 334455555555555555555432 2234455555555555555555555555555443 33445555555555555555
Q ss_pred HHHHHHHHhcCC--C----------------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH
Q 044422 288 EEAVYVFNNMHG--K----------------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR-VKPDAITFLGVISSCR 348 (519)
Q Consensus 288 ~~a~~~~~~~~~--~----------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~ 348 (519)
++|.+.++.... | +.......+..+...+.+.+|...+.+..+.. -.++..++..+...+.
T Consensus 104 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~ 183 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 183 (323)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred cccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 555555554321 1 11111222334455667888888888876643 2345677888888999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHH
Q 044422 349 HGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLA 428 (519)
Q Consensus 349 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~ 428 (519)
..|++++|...+++..... +-+...|..+...|...|++++|.+.|++ +++++|.++.+|..|+
T Consensus 184 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~---------------al~~~p~~~~a~~~lg 247 (323)
T d1fcha_ 184 LSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRR---------------ALELQPGYIRSRYNLG 247 (323)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------HHHHCTTCHHHHHHHH
T ss_pred HHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHH---------------HHHHhhccHHHHHHHH
Confidence 9999999999999998753 33577888999999999999999988774 3567888999999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHC
Q 044422 429 NLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
.+|.+.|++++|++.|++..+.
T Consensus 248 ~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 248 ISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=6.2e-11 Score=110.14 Aligned_cols=220 Identities=14% Similarity=0.071 Sum_probs=142.0
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChH
Q 044422 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVD 218 (519)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~ 218 (519)
...+.+.|++++|...|+.+++.. +-+..+|..+..++...|++++|...|++.. +.+...|..+..+|...|+++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 104 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 104 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 334556677777777777766643 3345566666777777777777777666654 234556666666777777777
Q ss_pred HHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHccCCchHHHHHHHHHHHcC-CCCcHHHHHHHHHHH
Q 044422 219 MCLELYRMMRNSMLEPND----------------FTFTSILSACTGSGALGQGRSAHCQTIRMG-FFSYIQVANSLISMY 281 (519)
Q Consensus 219 ~a~~~~~~m~~~g~~p~~----------------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~ 281 (519)
+|.+.+++..... |+. ......+..+...+...++...+....+.. -..+..++..+...+
T Consensus 105 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 105 QACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred ccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 7777776665432 110 001111222333445566666666665532 234566777777888
Q ss_pred HhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 044422 282 CKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKV 358 (519)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 358 (519)
...|++++|...|++..+ .+..+|..+..+|...|++++|.+.|++..+.. +-+...+..+..+|.+.|++++|..
T Consensus 183 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 261 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVE 261 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888877542 356677788888888888888888888877642 1245667777888888888888888
Q ss_pred HHHHHHH
Q 044422 359 YFDSMAK 365 (519)
Q Consensus 359 ~~~~m~~ 365 (519)
.|++..+
T Consensus 262 ~~~~al~ 268 (323)
T d1fcha_ 262 HFLEALN 268 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=6.1e-08 Score=90.12 Aligned_cols=239 Identities=10% Similarity=-0.003 Sum_probs=137.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCchHHHHHHHHHHHc----CCC--C-c
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNS----MLEP-NDFTFTSILSACTGSGALGQGRSAHCQTIRM----GFF--S-Y 270 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~ 270 (519)
.++.+..++...|++++|...|++.... +..+ ...++..+...+...|++..+...+...... +.. + .
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~ 132 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 132 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence 3444445555555555555555544321 1111 1123344445555566666666555544321 111 1 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC----
Q 044422 271 IQVANSLISMYCKCGNVEEAVYVFNNMHG--------KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ--RVKPD---- 336 (519)
Q Consensus 271 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~---- 336 (519)
...+..+...+...|+++.+...+..... .....+..+...+...++...+...+.+.... .....
T Consensus 133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 212 (366)
T d1hz4a_ 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 212 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence 23445555666677777777766665432 12234455556677777887777777665432 11111
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 044422 337 AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK---PELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESR 413 (519)
Q Consensus 337 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~ 413 (519)
...+..+...+...|+++.|...++...+.... .....+..+...+...|++++|...++..- ...+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---------~~~~~ 283 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN---------ENARS 283 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HHHhh
Confidence 223455556677888899998888877643211 234456667888899999999998887651 00111
Q ss_pred hhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 414 LLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 414 ~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
....|....++..+..+|...|++++|.+.+++..+.
T Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 284 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2233344457777899999999999999999886543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=1.3e-07 Score=87.76 Aligned_cols=257 Identities=11% Similarity=0.034 Sum_probs=184.5
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHhCCCHHHHHHHHccCCC-----CC----hhHHHH
Q 044422 141 AVTSCGSTRNIRGGAPYQCLAIRTGFIAN-----VYVGSSLITLYSKCRVIIDAYKVFEEMPV-----RN----VVSWTA 206 (519)
Q Consensus 141 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~ 206 (519)
....+...|++++|.++++..++.. +.+ ...+..+..+|...|++++|...|++... ++ ...+..
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 3455678899999999999887753 212 24677788888999999999999887652 22 335666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH----CCCC--CC-HHHHHHHHHHHHccCCchHHHHHHHHHHHcC----CCCcHHHHH
Q 044422 207 IIAAFAQEWQVDMCLELYRMMRN----SMLE--PN-DFTFTSILSACTGSGALGQGRSAHCQTIRMG----FFSYIQVAN 275 (519)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~m~~----~g~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~ 275 (519)
+...+...|++..+...+.+... .+.. +. ...+..+...+...|+++.+...+....... .......+.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 77788889999999888877643 2211 22 2355667778889999999999888877542 223455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-------C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHH
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHG-------K---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKP---DAITFLG 342 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~-------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~t~~~ 342 (519)
.....+...++...+...+..... . ....+..+...+...|++++|...++...+..... ....+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 777778888888888877765432 1 22356666777889999999999998876543222 2345666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH----cCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 343 VISSCRHGGLVEEGKVYFDSMAK----HGLKPE-LDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 343 ll~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+..++...|+++.|...++.... .+..|+ ...+..+...|.+.|++++|.+.+++.
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77889999999999999988763 344443 456777889999999999999998864
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=2.4e-07 Score=84.92 Aligned_cols=209 Identities=10% Similarity=-0.021 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-CHHHHHHHHccCC---CCChhHHHHHHHH
Q 044422 135 ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR-VIIDAYKVFEEMP---VRNVVSWTAIIAA 210 (519)
Q Consensus 135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~---~~~~~~~~~li~~ 210 (519)
...|+.+-..+.+.+..++|.++++.+++.. +-+..+|+....++...| ++++|+..++... +.+..+|+.+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence 3455556666777888999999999999874 446668888888888876 5899999998875 4567889999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC----
Q 044422 211 FAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN---- 286 (519)
Q Consensus 211 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---- 286 (519)
+.+.|++++|+..++++.+.. +-+...|..+...+.+.|++++|...++.+.+.. +.+...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence 999999999999999998754 3467888889999999999999999999998875 5566677777666666554
Q ss_pred --HHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 044422 287 --VEEAVYVFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKP-DAITFLGVISSC 347 (519)
Q Consensus 287 --~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~ 347 (519)
+++|.+.+....+ | +...|+.+...+. ....+++.+.++...+....+ +...+..+...+
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 4566666665542 3 5556665554433 334566666666665432222 334444455444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.84 E-value=4.4e-07 Score=82.91 Aligned_cols=183 Identities=7% Similarity=-0.005 Sum_probs=137.4
Q ss_pred CchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C-hhHHHHHHHHHHHcCChHHHHHHHH
Q 044422 251 ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--K-D-IVSWNSMIAGYAQHGLAVRAIDLFE 326 (519)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~ 326 (519)
..++|..+++...+...+.+...+...+..+.+.|+++.|..+|+.+.+ | + ...|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4467788888888765566677888888889999999999999998754 2 2 3468888888999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC----CCC
Q 044422 327 EMMKQRVKPDAITFLGVIS-SCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM----PIY 401 (519)
Q Consensus 327 ~m~~~~~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~ 401 (519)
++.+.+.. +...|..... -+...|+.+.|..+|+.+.+. .+.+...|..+++.+.+.|+++.|..+|++. +..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 98876533 3333433332 244568899999999999875 3456788999999999999999999999875 112
Q ss_pred CCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 402 PNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 402 p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
|+ .....|...+..-...|+.+.+.++++++.+.
T Consensus 237 ~~---------------~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PE---------------KSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GG---------------GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hH---------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 21 11124444577778889999999999988664
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=9.7e-08 Score=87.61 Aligned_cols=199 Identities=7% Similarity=0.032 Sum_probs=103.1
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 044422 238 TFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCG-NVEEAVYVFNNMHG---KDIVSWNSMIAGYA 313 (519)
Q Consensus 238 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 313 (519)
.|+.+...+.+.+..++|..+++.+.+.. |-+...|+....++...| ++++|+..++...+ .+..+|+.+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 34444444445555555555555555543 334445555555555544 35555555554432 24455666666666
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 044422 314 QHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARD 393 (519)
Q Consensus 314 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 393 (519)
+.|++++|+..++++.+... -+...|..+...+...|+++.|...++.+.+.+ +-+...|+.+...+.+.+....+..
T Consensus 124 ~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred hhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhh
Confidence 66666666666666665422 245566666666666666666666666666533 2244455555444444444222111
Q ss_pred HHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 394 FIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 394 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
+-+. ...+.++++++|.+..+|..+...+...| .+++.+.++...+
T Consensus 202 ~~~a---------i~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 202 LERE---------VQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHH---------HHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred hHHh---------HHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 1111 12233455666666666666655544333 4556666665554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.82 E-value=2.2e-07 Score=84.90 Aligned_cols=162 Identities=9% Similarity=-0.015 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH-H
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISM-Y 281 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~ 281 (519)
.|...+....+.|++++|..+|+++...........|...+..+.+.|+.+.|.++|+.+.+.+ +.+...|...... +
T Consensus 101 l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~ 179 (308)
T d2onda1 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY 179 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3344444444444444444444444432211112234444444444444444444444444332 1222222222211 2
Q ss_pred HhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccCCHHH
Q 044422 282 CKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR-VKPD--AITFLGVISSCRHGGLVEE 355 (519)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~t~~~ll~~~~~~g~~~~ 355 (519)
...|+.+.|..+|+.+.+ .++..|...+..+.+.|+++.|..+|++..+.. ..|+ ...|...+.--...|+.+.
T Consensus 180 ~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~ 259 (308)
T d2onda1 180 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 259 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred HhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 223445555555554432 234455555555555556666666665554432 2322 2345555554455566666
Q ss_pred HHHHHHHHHH
Q 044422 356 GKVYFDSMAK 365 (519)
Q Consensus 356 a~~~~~~m~~ 365 (519)
+..+++++.+
T Consensus 260 ~~~~~~r~~~ 269 (308)
T d2onda1 260 ILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=2.6e-07 Score=81.96 Aligned_cols=217 Identities=13% Similarity=0.039 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 044422 217 VDMCLELYRMMRNSML-EP--NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYV 293 (519)
Q Consensus 217 ~~~a~~~~~~m~~~g~-~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 293 (519)
.+.++.-+++...... .+ ...+|..+..+|.+.|++++|...|+...+.. +.+..+|+.+..+|.+.|++++|...
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 4455555555554321 11 22456667777888888888888888887764 55677888888888888888888888
Q ss_pred HHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc
Q 044422 294 FNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKP 370 (519)
Q Consensus 294 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p 370 (519)
|++..+ | +..++..+..+|...|++++|...|+...+.. +.+......+..++.+.+..+....+........ +
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 170 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--K 170 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--C
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--h
Confidence 887653 3 45677888888888889999988888887753 2244443334444555555555555555554432 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH-HhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 371 ELDHYSCVVDLLGRAGLLEEARDFI-KQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 371 ~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
+...++ ++..+............. .... . .....|....+|..|+..|...|++++|.+.|++...
T Consensus 171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 171 EQWGWN-IVEFYLGNISEQTLMERLKADAT---D---------NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp CSTHHH-HHHHHTTSSCHHHHHHHHHHHCC---S---------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHH---H---------hhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222222 222222111111111111 1111 1 1122233445777889999999999999999998876
Q ss_pred C
Q 044422 450 K 450 (519)
Q Consensus 450 ~ 450 (519)
.
T Consensus 238 ~ 238 (259)
T d1xnfa_ 238 N 238 (259)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.74 E-value=1.3e-08 Score=94.65 Aligned_cols=263 Identities=8% Similarity=-0.060 Sum_probs=171.4
Q ss_pred CChhhHHHHHHHHHHhCCCChH-HHHHHHH---HHHH-------hCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhc
Q 044422 149 RNIRGGAPYQCLAIRTGFIANV-YVGSSLI---TLYS-------KCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQE 214 (519)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~-~~~~~li---~~~~-------~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 214 (519)
...++|..+++.+++.. |+. ..|+..- ..+. ..|++++|+.+++... +.+...|..+..++...
T Consensus 43 ~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHh
Confidence 33478888888887653 443 3443322 2222 2344677777777765 34566677776666666
Q ss_pred CC--hHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 044422 215 WQ--VDMCLELYRMMRNSMLEPNDFTFT-SILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAV 291 (519)
Q Consensus 215 ~~--~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 291 (519)
++ +++|...++++.... +++...+. .....+...+..++|...++.+.+.. +-+...|+.+..++.+.|++++|.
T Consensus 121 ~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHH
Confidence 54 788888888887754 33444443 44466667788888888888877765 456778888888888888877765
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC
Q 044422 292 YVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE 371 (519)
Q Consensus 292 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 371 (519)
..+....+-.... ......+...+..+++...+....... +++...+..+...+...++.+.|...+.+..+.. +.+
T Consensus 199 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~ 275 (334)
T d1dcea1 199 PQGRLPENVLLKE-LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWC 275 (334)
T ss_dssp SCCSSCHHHHHHH-HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHH
T ss_pred HHHHHhHHhHHHH-HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chH
Confidence 5544333221111 223344556677777877777776653 2334445556666777788888888888877643 225
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhc
Q 044422 372 LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAG 433 (519)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 433 (519)
...+..+...|...|+.++|.+.++.. ++++|.+...|..|...+.-
T Consensus 276 ~~~~~~l~~~~~~~~~~~eA~~~~~~a---------------i~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 276 LLTIILLMRALDPLLYEKETLQYFSTL---------------KAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHCTGGGHHHHHHHHHHH---------------HHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH---------------HHHCcccHHHHHHHHHHHhH
Confidence 566777888899999999999888754 56677766677766665553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=3.1e-06 Score=74.62 Aligned_cols=212 Identities=10% Similarity=-0.084 Sum_probs=124.1
Q ss_pred CHHHHHHHHHHHhHCCC-CC--CHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHH
Q 044422 115 DVEKLISMHHDLHRERL-KV--DASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYK 191 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 191 (519)
..+.|+.-+++...... .+ ...+|..+..++.+.|+++.|...|...++.. +-+..+|+.+..+|.+.|++++|+.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 45666666777665422 11 22356666677888888888888888888764 4466788888888888888888888
Q ss_pred HHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCC
Q 044422 192 VFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFF 268 (519)
Q Consensus 192 ~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 268 (519)
.|++.. +.+..+|..+..++...|++++|...|++..+.. +.+......+..++.+.+..+.+..+..........
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 171 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence 888775 2345677788888888888888888888877653 234444434444444555544444444444443211
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHh-cCC-----C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 044422 269 SYIQVANSLISMYCKCGNVEEAVYVFNN-MHG-----K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 269 ~~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~-----~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 331 (519)
+ ..++ ++..+............... ... + ...+|..+...|...|++++|.+.|+.....
T Consensus 172 ~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 172 Q--WGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp S--THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred h--hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 1 1111 22222222222211111111 111 1 2234555666666667777777776666543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.58 E-value=1.2e-07 Score=87.80 Aligned_cols=255 Identities=6% Similarity=-0.079 Sum_probs=175.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCC--CCC-hhHHHHHHHH----------HHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 044422 173 GSSLITLYSKCRVIIDAYKVFEEMP--VRN-VVSWTAIIAA----------FAQEWQVDMCLELYRMMRNSMLEPNDFTF 239 (519)
Q Consensus 173 ~~~li~~~~~~g~~~~A~~~~~~m~--~~~-~~~~~~li~~----------~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 239 (519)
...++....+.+..++|++++++.. .|+ ...|+..-.. +...|++++|+.+++...+.. +-+...+
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~ 110 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW 110 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHH
Confidence 3334444444444589999999876 344 3445443322 233445788999999987754 3356667
Q ss_pred HHHHHHHHccC--CchHHHHHHHHHHHcCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHH
Q 044422 240 TSILSACTGSG--ALGQGRSAHCQTIRMGFFSYIQVA-NSLISMYCKCGNVEEAVYVFNNMHGK---DIVSWNSMIAGYA 313 (519)
Q Consensus 240 ~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~ 313 (519)
..+..++...+ ++++|...++.+.+.. +++...+ ......+...+..++|+..++...+. +..+|+.+...+.
T Consensus 111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 111 HHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 77777776665 4789999999988875 4445554 45557788889999999999988763 6678898999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 044422 314 QHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARD 393 (519)
Q Consensus 314 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 393 (519)
+.|++++|...+....+. .|+. ..+...+...+..+.+...+....... +++...+..+...+...|+.++|..
T Consensus 190 ~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 263 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCK 263 (334)
T ss_dssp HHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHH
Confidence 999988776655443322 1111 122333455566667777777776643 3444455666777778888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 394 FIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 394 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
.+.+. +..+|.+..++..++.+|...|++++|.+.+++..+.
T Consensus 264 ~~~~~---------------~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 264 ELQEL---------------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHH---------------CTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHH---------------HhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77654 3444555567888999999999999999999998774
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.43 E-value=8.8e-06 Score=73.20 Aligned_cols=176 Identities=6% Similarity=-0.082 Sum_probs=98.3
Q ss_pred hcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHh----CCCC-hHHHHHHHHHHHHhC
Q 044422 109 LDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRT----GFIA-NVYVGSSLITLYSKC 183 (519)
Q Consensus 109 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~ 183 (519)
..++..++++|.++|... ...|...+++++|...|..+.+. +-++ -..+|+.+..+|.+.
T Consensus 26 ~~~~~~~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~ 90 (290)
T d1qqea_ 26 SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG 90 (290)
T ss_dssp SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCCccccHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 334444567776665543 45677788888888888877653 2122 234677777788888
Q ss_pred CCHHHHHHHHccCCC-----C----ChhHHHHHHHHHHh-cCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHc
Q 044422 184 RVIIDAYKVFEEMPV-----R----NVVSWTAIIAAFAQ-EWQVDMCLELYRMMRN----SMLEPN-DFTFTSILSACTG 248 (519)
Q Consensus 184 g~~~~A~~~~~~m~~-----~----~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~ 248 (519)
|++++|...+++... . ...++..+...|.. .|++++|+..|++..+ .+-++. ..++..+...+..
T Consensus 91 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~ 170 (290)
T d1qqea_ 91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170 (290)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Confidence 888887777765431 1 12344455555533 4677777776665532 121111 2345556666666
Q ss_pred cCCchHHHHHHHHHHHcCCCC-----c-HHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 044422 249 SGALGQGRSAHCQTIRMGFFS-----Y-IQVANSLISMYCKCGNVEEAVYVFNNMHG 299 (519)
Q Consensus 249 ~g~~~~a~~~~~~~~~~~~~~-----~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 299 (519)
.|++++|...++.+....... . ...+...+..+...|++..|...++...+
T Consensus 171 ~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred cChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 666666666666655532111 1 11223333444555666666666665544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.33 E-value=2.7e-05 Score=69.89 Aligned_cols=195 Identities=9% Similarity=0.039 Sum_probs=126.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCchHHHHHHHHHHHc----CC-CCcHHHH
Q 044422 205 TAIIAAFAQEWQVDMCLELYRMMRNS----MLEPN-DFTFTSILSACTGSGALGQGRSAHCQTIRM----GF-FSYIQVA 274 (519)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~ 274 (519)
......|...+++++|.+.|.+.... +-+++ ..+|..+..+|.+.|++++|.+.++...+. |. .....++
T Consensus 41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 120 (290)
T d1qqea_ 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120 (290)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHH
Confidence 33466777778888888877776432 22222 356777788888888888888887766542 21 1123456
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHhcCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----H-H
Q 044422 275 NSLISMYCK-CGNVEEAVYVFNNMHG-----K----DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD-----A-I 338 (519)
Q Consensus 275 ~~li~~~~~-~~~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~-~ 338 (519)
..+...|.. .|++++|.+.|.+..+ . -..+|..+...+...|++++|...|++......... . .
T Consensus 121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
T d1qqea_ 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (290)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHH
Confidence 666666644 5888888888876542 1 124577788899999999999999999877532211 1 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-c---CHHHHHHHHHHHHH--cCCHHHHHHHHHhCC
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLK-P---ELDHYSCVVDLLGR--AGLLEEARDFIKQMP 399 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p---~~~~~~~li~~~~~--~g~~~~A~~~~~~~~ 399 (519)
.+...+..+...|+++.|...+++..+.... + .......++.++-. .+.+++|...|+.+.
T Consensus 201 ~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 2334444566789999999999988764211 1 12345566666655 345888888888763
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=1.6e-05 Score=66.51 Aligned_cols=87 Identities=6% Similarity=-0.112 Sum_probs=68.7
Q ss_pred HHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHH
Q 044422 177 ITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGR 256 (519)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 256 (519)
...+...|+++.|++.|+++.+++..+|..+..+|...|++++|++.|++..+.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4556778888888888888888888888888888888888888888888887754 345667777888888888888888
Q ss_pred HHHHHHHH
Q 044422 257 SAHCQTIR 264 (519)
Q Consensus 257 ~~~~~~~~ 264 (519)
..|+....
T Consensus 91 ~~~~kAl~ 98 (192)
T d1hh8a_ 91 KDLKEALI 98 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=3.8e-05 Score=64.10 Aligned_cols=120 Identities=8% Similarity=-0.052 Sum_probs=97.3
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 044422 278 ISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGK 357 (519)
Q Consensus 278 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 357 (519)
...+...|+++.|++.|..+..++..+|..+..+|...|++++|.+.|++..+... -+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccHHHHH
Confidence 45667889999999999998888888899999999999999999999999887643 35678888888899999999999
Q ss_pred HHHHHHHHcC------------C--CcC-HHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 358 VYFDSMAKHG------------L--KPE-LDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 358 ~~~~~m~~~~------------~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
..|++..... . .++ ..++..+..++.+.|++++|.+.++..
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A 146 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9998876521 0 111 355667788899999999999988754
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.21 E-value=7.9e-06 Score=68.85 Aligned_cols=92 Identities=5% Similarity=-0.132 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHH
Q 044422 302 IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKP-ELDHYSCVVD 380 (519)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~ 380 (519)
...+......|.+.|++++|+..|++..+.. +-+...|..+..+|.+.|+++.|...|+...+. .| +...|..+..
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~lg~ 80 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHHHH
Confidence 3344444555666666666666666555542 224455555555666666666666666665542 23 3445555666
Q ss_pred HHHHcCCHHHHHHHHH
Q 044422 381 LLGRAGLLEEARDFIK 396 (519)
Q Consensus 381 ~~~~~g~~~~A~~~~~ 396 (519)
+|.+.|++++|...|+
T Consensus 81 ~~~~l~~~~~A~~~~~ 96 (201)
T d2c2la1 81 CQLEMESYDEAIANLQ 96 (201)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHH
Confidence 6666666666665554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=1.8e-05 Score=60.06 Aligned_cols=88 Identities=13% Similarity=-0.017 Sum_probs=62.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCH
Q 044422 309 IAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLL 388 (519)
Q Consensus 309 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 388 (519)
...+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|...++...+.+ +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 455667777777777777776653 3356667777777777788888877777777654 34666777777777778888
Q ss_pred HHHHHHHHhC
Q 044422 389 EEARDFIKQM 398 (519)
Q Consensus 389 ~~A~~~~~~~ 398 (519)
++|...|++.
T Consensus 88 ~~A~~~~~~a 97 (117)
T d1elwa_ 88 EEAKRTYEEG 97 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777776654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=3.1e-05 Score=62.44 Aligned_cols=120 Identities=9% Similarity=0.024 Sum_probs=84.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcC
Q 044422 307 SMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAG 386 (519)
Q Consensus 307 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 386 (519)
.....|.+.|++++|...|++..+.. +-+...|..+..+|...|++++|...|++..+.. +-+...|..+..+|...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence 34556778888888888888887764 2356777778888888888888888888888754 335577888888888888
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHH--HhccCCHHHHHHH
Q 044422 387 LLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANL--YAGVRCWDQAARV 443 (519)
Q Consensus 387 ~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~g~~~~A~~~ 443 (519)
++++|...+++. +.++|.++..+..+..+ ....+.+++|...
T Consensus 93 ~~~eA~~~~~~a---------------~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETV---------------VKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHH---------------HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---------------HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888888866644 45556665555555444 3334456666554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.09 E-value=0.0033 Score=56.46 Aligned_cols=281 Identities=10% Similarity=0.018 Sum_probs=176.8
Q ss_pred CCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHH
Q 044422 133 VDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFA 212 (519)
Q Consensus 133 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~ 212 (519)
||..--..+...|.+.|.++.|..++..+ .-|..++..+.+.++++.|.+++.+.. +..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 44444556677777888888888888643 246667778888888888888877553 5667888888887
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 044422 213 QEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVY 292 (519)
Q Consensus 213 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 292 (519)
+.....-+. +...+...+......++..|-..|.+++...+++...... ..+...++-++..|++.+ .++..+
T Consensus 81 ~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl~e 153 (336)
T d1b89a_ 81 DGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMRE 153 (336)
T ss_dssp HTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred hCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHHHH
Confidence 776665432 2233344455666778888888888888888887765432 556777888888888765 455555
Q ss_pred HHHhcCCC-----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 044422 293 VFNNMHGK-----------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFD 361 (519)
Q Consensus 293 ~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 361 (519)
.++..... ....|..++-.|.+.|++++|..++-. . .++..-...++..+.+..+.+...++..
T Consensus 154 ~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~---~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~ 228 (336)
T d1b89a_ 154 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKVANVELYYRAIQ 228 (336)
T ss_dssp HHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---S--TTTTCCHHHHHHHHHHCSSTHHHHHHHH
T ss_pred HHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH---c--chhhhhHHHHHHHHHccCChHHHHHHHH
Confidence 55543321 122355666677777777777665432 1 3333334556777888899888888888
Q ss_pred HHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHH
Q 044422 362 SMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAA 441 (519)
Q Consensus 362 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~ 441 (519)
...+. .| ...+.++......-+..+..+.+++-+.-|-...|- +... ...+..++..|...|...++++.-.
T Consensus 229 ~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~L--e~v~--~~n~~~vn~al~~lyie~~d~~~l~ 300 (336)
T d1b89a_ 229 FYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYL--RSVQ--NHNNKSVNESLNNLFITEEDYQALR 300 (336)
T ss_dssp HHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHH--HHHH--TTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHH--HHHH--HcChHHHHHHHHHHHhCcchhHHHH
Confidence 77763 34 345778888888888999999998875445444442 2222 2334578999999999999976544
Q ss_pred HHH
Q 044422 442 RVR 444 (519)
Q Consensus 442 ~~~ 444 (519)
+..
T Consensus 301 ~~i 303 (336)
T d1b89a_ 301 TSI 303 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.02 E-value=1.6e-05 Score=59.85 Aligned_cols=89 Identities=12% Similarity=0.004 Sum_probs=68.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCch
Q 044422 343 VISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAA 422 (519)
Q Consensus 343 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 422 (519)
+...+.+.|++++|...|++..+.. +-+...|..+..++.+.|++++|...+++ +++++|.++.
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~---------------al~~~p~~~~ 85 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNH---------------ARMLDPKDIA 85 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------HHHHCTTCHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccc---------------cccccccccc
Confidence 3445677888888888888887643 22577788888888888888888877764 4677788888
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHH
Q 044422 423 THVQLANLYAGVRCWDQAARVRKLM 447 (519)
Q Consensus 423 ~~~~L~~~~~~~g~~~~A~~~~~~m 447 (519)
++..|+..|...|++++|.+.+++.
T Consensus 86 a~~~la~~y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 86 VHAALAVSHTNEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888888888888888888764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.00 E-value=5.1e-05 Score=63.61 Aligned_cols=96 Identities=8% Similarity=-0.089 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHH
Q 044422 234 PNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--K-DIVSWNSMIA 310 (519)
Q Consensus 234 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~ 310 (519)
|+...+......+.+.|++++|...|....+.. +.+...|..+..+|.+.|++++|+..|+...+ | ++.+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 556666666777777777777777777766654 55666777777777777777777777776654 3 4556777777
Q ss_pred HHHHcCChHHHHHHHHHHHH
Q 044422 311 GYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 311 ~~~~~g~~~~A~~~~~~m~~ 330 (519)
+|.+.|++++|...|++..+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777776654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=7.8e-05 Score=59.95 Aligned_cols=87 Identities=9% Similarity=-0.010 Sum_probs=43.4
Q ss_pred HHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchH
Q 044422 178 TLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQ 254 (519)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 254 (519)
+.|.+.|++++|+..|++.. +.+...|..+..+|...|++++|...|++..+.. +-+...|..+..++...|++++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHHH
Confidence 34445555555555555443 2334445555555555555555555555554432 2233445555555555555555
Q ss_pred HHHHHHHHHHc
Q 044422 255 GRSAHCQTIRM 265 (519)
Q Consensus 255 a~~~~~~~~~~ 265 (519)
|...++.....
T Consensus 97 A~~~~~~a~~~ 107 (159)
T d1a17a_ 97 ALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 55555555444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=7.8e-05 Score=56.38 Aligned_cols=84 Identities=13% Similarity=0.021 Sum_probs=33.5
Q ss_pred HHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHH
Q 044422 180 YSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGR 256 (519)
Q Consensus 180 ~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 256 (519)
+.+.|++++|+..|++.. +.+...|..+..+|...|++++|+..+++....+ +.+...|..+..++...|++++|.
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~A~ 91 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAK 91 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHHHH
Confidence 333444444444444332 1233334444444444444444444444443332 223333444444444444444444
Q ss_pred HHHHHHHH
Q 044422 257 SAHCQTIR 264 (519)
Q Consensus 257 ~~~~~~~~ 264 (519)
..++...+
T Consensus 92 ~~~~~a~~ 99 (117)
T d1elwa_ 92 RTYEEGLK 99 (117)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 44444433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=0.00021 Score=58.06 Aligned_cols=85 Identities=15% Similarity=-0.007 Sum_probs=61.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCC
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEP 418 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~ 418 (519)
+|+.+..+|.+.|++++|...++...+.. +-+...|..+..+|...|++++|...|+.. ++++|
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a---------------l~l~P 127 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKV---------------LQLYP 127 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCS
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHH---------------HHhCC
Confidence 46667777888888888888888888753 336777888888888888888888877743 56667
Q ss_pred CCchhHHHHHHHHhccCCHHH
Q 044422 419 ECAATHVQLANLYAGVRCWDQ 439 (519)
Q Consensus 419 ~~~~~~~~L~~~~~~~g~~~~ 439 (519)
.++.+...+..+..+.+...+
T Consensus 128 ~n~~~~~~l~~~~~~~~~~~~ 148 (170)
T d1p5qa1 128 NNKAAKTQLAVCQQRIRRQLA 148 (170)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 777776666666655554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.86 E-value=0.0039 Score=54.16 Aligned_cols=221 Identities=10% Similarity=-0.001 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHh----CCCHHHHHHHHccCCC-CChhHHHHHHH
Q 044422 135 ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSK----CRVIIDAYKVFEEMPV-RNVVSWTAIIA 209 (519)
Q Consensus 135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~ 209 (519)
+..+..|-..+-+.+|.++|.+.|+...+.| +...+-.|...|.. ..+...|...+..... .++.....+..
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~ 78 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcccc
Confidence 4445555556666777777887777777766 34444445555554 4566677766666543 23344444444
Q ss_pred HHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----ccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 044422 210 AFAQ----EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACT----GSGALGQGRSAHCQTIRMGFFSYIQVANSLISMY 281 (519)
Q Consensus 210 ~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (519)
.+.. ..+.+.|...++.....|.. .. ...+...+. .......+...+...... .+...+..|...|
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~-~a--~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~ 152 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKYA-EG--CASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLY 152 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCH-HH--HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHhhhhhhhhh-hH--HHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhh
Confidence 4433 34566777777766665532 11 122222222 122334444444444443 2344455555555
Q ss_pred Hh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---
Q 044422 282 CK----CGNVEEAVYVFNNMHG-KDIVSWNSMIAGYAQ----HGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRH--- 349 (519)
Q Consensus 282 ~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~--- 349 (519)
.. ..+...+...++...+ .+..+...+...|.. ..+.++|...|+...+.| +...+..|...|.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g 229 (265)
T d1ouva_ 153 DAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEG 229 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSS
T ss_pred ccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCC
Confidence 54 2345555555554433 244444444444443 345666666666666654 23333344444433
Q ss_pred -cCCHHHHHHHHHHHHHcC
Q 044422 350 -GGLVEEGKVYFDSMAKHG 367 (519)
Q Consensus 350 -~g~~~~a~~~~~~m~~~~ 367 (519)
..+.++|.+.|++..+.|
T Consensus 230 ~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 230 VTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp SSCCSTTHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHHHCc
Confidence 224556666666665555
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=5.2e-05 Score=57.77 Aligned_cols=92 Identities=12% Similarity=0.068 Sum_probs=65.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCcC-HHHHHHHHHH
Q 044422 306 NSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL---VEEGKVYFDSMAKHGLKPE-LDHYSCVVDL 381 (519)
Q Consensus 306 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~ 381 (519)
..+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++ +++|..+++++...+..|+ ..++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456777778888888888888887754 3366677777777776554 4468888888776443333 2356678888
Q ss_pred HHHcCCHHHHHHHHHhC
Q 044422 382 LGRAGLLEEARDFIKQM 398 (519)
Q Consensus 382 ~~~~g~~~~A~~~~~~~ 398 (519)
|.+.|++++|.+.|+++
T Consensus 82 y~~~g~~~~A~~~~~~a 98 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGL 98 (122)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHH
Confidence 88888888888877755
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.73 E-value=0.00012 Score=54.71 Aligned_cols=88 Identities=9% Similarity=-0.056 Sum_probs=56.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 044422 207 IIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN 286 (519)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 286 (519)
+...+.+.|++++|+..|++..... +-+...|..+..++.+.|++++|...++...+.. +.+..++..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 4455666677777777777666543 2245666666666777777777777776666654 4456666666666666666
Q ss_pred HHHHHHHHHh
Q 044422 287 VEEAVYVFNN 296 (519)
Q Consensus 287 ~~~a~~~~~~ 296 (519)
+++|.+.|++
T Consensus 100 ~~~A~~~l~~ 109 (112)
T d1hxia_ 100 ANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=0.00023 Score=53.97 Aligned_cols=95 Identities=9% Similarity=-0.031 Sum_probs=68.0
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCH---HHHHHHHccCCC--CCh---hHHHHHHHH
Q 044422 139 STAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVI---IDAYKVFEEMPV--RNV---VSWTAIIAA 210 (519)
Q Consensus 139 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~--~~~---~~~~~li~~ 210 (519)
..+++.+...+++++|++.|+..++.+ +.+..++..+..++.+.++. ++|+.+|++... |+. .+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456677777788888888888888775 55777777788888765544 458888887654 222 256677778
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH
Q 044422 211 FAQEWQVDMCLELYRMMRNSMLEPND 236 (519)
Q Consensus 211 ~~~~~~~~~a~~~~~~m~~~g~~p~~ 236 (519)
|.+.|++++|.+.|++..+. .|+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~ 105 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQN 105 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCC
Confidence 88888888888888888774 4543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.54 E-value=0.00091 Score=52.96 Aligned_cols=59 Identities=14% Similarity=0.012 Sum_probs=45.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+|..+..+|.+.|+++.|...++...+.. +.+..+|..+..++...|++++|...|++.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~a 127 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKA 127 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHH
Confidence 56667777888888888888888887753 346778888888888888888888777643
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.47 E-value=0.00052 Score=55.98 Aligned_cols=121 Identities=12% Similarity=0.078 Sum_probs=82.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcC
Q 044422 307 SMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAG 386 (519)
Q Consensus 307 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 386 (519)
.........|++++|...|.+....- +... +..+.. +.+ +...-..+.. -....+..+...+.+.|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~-----l~~~~~-~~w--~~~~r~~l~~----~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW--RGPV-----LDDLRD-FQF--VEPFATALVE----DKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC--CSST-----TGGGTT-STT--HHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--cccc-----cccCcc-hHH--HHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence 34456778888888888888877631 1110 000000 110 1111111111 12346777899999999
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHH-----HCCCCCCC
Q 044422 387 LLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMK-----DKGLKTNP 456 (519)
Q Consensus 387 ~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~-----~~g~~~~~ 456 (519)
++++|...++.+ +..+|.+...|..|+.+|.+.|++++|++.|+++. +.|+.|.+
T Consensus 82 ~~~~Al~~~~~a---------------l~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 82 RASAVIAELEAL---------------TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp CHHHHHHHHHHH---------------HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred CchHHHHHHHHH---------------HHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 999999987754 68889999999999999999999999999999974 46988875
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.40 E-value=0.0019 Score=51.95 Aligned_cols=94 Identities=12% Similarity=0.010 Sum_probs=63.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCC
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEP 418 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~ 418 (519)
+|+.+..+|.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|+++ +.++|
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~a---------------l~l~P 129 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKV---------------LEVNP 129 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHSCT
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCC
Confidence 45556667778888888888888887643 446677777888888888888888877643 45666
Q ss_pred CCchhHHHHHHHHhccCCHH-HHHHHHHHHH
Q 044422 419 ECAATHVQLANLYAGVRCWD-QAARVRKLMK 448 (519)
Q Consensus 419 ~~~~~~~~L~~~~~~~g~~~-~A~~~~~~m~ 448 (519)
.++.+...+.......+... ...+++..|-
T Consensus 130 ~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 130 QNKAARLQIFMCQKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66666666666655554443 3444555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.39 E-value=0.033 Score=47.89 Aligned_cols=111 Identities=13% Similarity=-0.019 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHH----cCCHH
Q 044422 318 AVRAIDLFEEMMKQRVKPDAITFLGVISSCRH----GGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGR----AGLLE 389 (519)
Q Consensus 318 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~ 389 (519)
...+...+......+ +...+..|...+.. ..+...+...++...+.| +......+...|.. ..+++
T Consensus 126 ~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 126 FKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred hHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchh
Confidence 444555554444322 33344444444442 344555555555555543 33334444444443 34566
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhc----cCCHHHHHHHHHHHHHCC
Q 044422 390 EARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAG----VRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 390 ~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~m~~~g 451 (519)
+|..+|+... + ..++.++..|...|.. .+++++|.+.|++..+.|
T Consensus 200 ~A~~~~~~aa---------------~--~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 200 EALARYSKAC---------------E--LENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHH---------------H--TTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhhhHhhhh---------------c--ccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 6666665441 0 0123344445666654 336777777777776666
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.38 E-value=0.00089 Score=54.03 Aligned_cols=79 Identities=8% Similarity=-0.083 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 044422 201 VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISM 280 (519)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 280 (519)
...|+.+..++.+.|++++|+..+++..+.. +-+..+|..+..++.+.|++++|...|+...+.. +.+..+...+..+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~ 154 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4456666677777777777777777776654 3355667777777777777777777777777654 3344445444444
Q ss_pred H
Q 044422 281 Y 281 (519)
Q Consensus 281 ~ 281 (519)
.
T Consensus 155 ~ 155 (169)
T d1ihga1 155 K 155 (169)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.00083 Score=54.31 Aligned_cols=62 Identities=8% Similarity=0.010 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRM 265 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 265 (519)
+|+.+..+|.+.|++++|+..+++..... +-+..++..+..++...|++++|...|+...+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44555556666666666666666655543 224555566666666666666666666666554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.34 E-value=0.0017 Score=51.27 Aligned_cols=109 Identities=11% Similarity=0.018 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRV----KPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVV 379 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 379 (519)
.+..-...+.+.|++.+|+..|.+..+.-. .++.... .... .....+|..+.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~--------------------~~~~----~~~~~~~~Nla 74 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL--------------------DKKK----NIEISCNLNLA 74 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH--------------------HHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH--------------------Hhhh----hHHHHHHhhHH
Confidence 455566677788888888888887765311 0111100 0000 01234677788
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 380 DLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
.+|.+.|++++|.+.++. +++++|.+..+|..++.+|...|++++|+..|++..+..
T Consensus 75 ~~~~~l~~~~~Al~~~~~---------------al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 75 TCYNKNKDYPKAIDHASK---------------VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHTTCHHHHHHHHHH---------------HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhcccchhhhhhhc---------------cccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999987764 468899999999999999999999999999999988754
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.26 E-value=0.005 Score=49.90 Aligned_cols=127 Identities=8% Similarity=-0.016 Sum_probs=64.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHG--KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLV 353 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 353 (519)
.........|++++|.+.|..... ++... ......+-+...-..+... ....+..+..++...|++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l--------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVL--------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTT--------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCccccc--------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCc
Confidence 344577889999999999987654 11100 0000000000000011000 112344555566666666
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCCHHHHHHHHHhhh
Q 044422 354 EEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM--------PIYPNAVIWEAAESRLL 415 (519)
Q Consensus 354 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~~~~~~~ 415 (519)
++|...++.+.+.. +-+...|..++.+|.+.|+..+|.+.|+++ ++.|+..+-.....++.
T Consensus 84 ~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~il~ 152 (179)
T d2ff4a2 84 SAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILR 152 (179)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 66666666666532 335556666666666666666666666543 45555544444333333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.23 E-value=0.003 Score=50.77 Aligned_cols=82 Identities=5% Similarity=-0.072 Sum_probs=58.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 044422 301 DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVD 380 (519)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 380 (519)
....|+.+..++.+.|++++|+..+++..+.. +-+...|..+..++...|+++.|...|+...+.. +.+......+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34466777788888888888888888888754 3356778888888888888888888888888743 224444555544
Q ss_pred HHHH
Q 044422 381 LLGR 384 (519)
Q Consensus 381 ~~~~ 384 (519)
+..+
T Consensus 154 ~~~~ 157 (169)
T d1ihga1 154 VKQK 157 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.0016 Score=49.71 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 044422 305 WNSMIAGYAQHGLAVRAIDLFEEMM 329 (519)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m~ 329 (519)
|..+...+...+++++|...|++..
T Consensus 82 ~~~lg~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 82 YARIGNSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444455555555555555443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.0015 Score=49.81 Aligned_cols=95 Identities=14% Similarity=0.085 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcC---CC--Cc-HHHHHH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMG---FF--SY-IQVANS 276 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~--~~-~~~~~~ 276 (519)
.+..+...+.+.|++++|+..|++..+.+ +.+...+..+..+|.+.|++++|...++.+.+.. .. +. ..+|..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34556777888888888888888887764 3467788888888888888888888888876532 01 11 347778
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC
Q 044422 277 LISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 277 li~~~~~~~~~~~a~~~~~~~~ 298 (519)
+...+...+++++|.+.|....
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 8888889999999999987643
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.16 E-value=0.075 Score=47.28 Aligned_cols=253 Identities=7% Similarity=-0.041 Sum_probs=155.3
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
.++.|..+|..+.. |..++..+.+.++++.|.++.. +.+ +..+|..+...+.+......|.-+ .
T Consensus 29 lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~---k~~---~~~~~k~~~~~l~~~~e~~la~i~-~ 92 (336)
T d1b89a_ 29 MYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGAR---KAN---STRTWKEVCFACVDGKEFRLAQMC-G 92 (336)
T ss_dssp CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHH---HHT---CHHHHHHHHHHHHHTTCHHHHHHT-T
T ss_pred CHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHH---HcC---CHHHHHHHHHHHHhCcHHHHHHHH-H
Confidence 56777777765532 5577888888889888777664 333 566888888888888777665332 2
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHH
Q 044422 195 EMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVA 274 (519)
Q Consensus 195 ~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 274 (519)
.....++.....++..|-..|.+++...+++..... -.++...++.++..|++.+. .++.+.+...+-..+.
T Consensus 93 ~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~----~kl~e~l~~~s~~y~~--- 164 (336)
T d1b89a_ 93 LHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP----QKMREHLELFWSRVNI--- 164 (336)
T ss_dssp TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH----HHHHHHHHHHSTTSCH---
T ss_pred HHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh----HHHHHHHHhccccCCH---
Confidence 222345555677889999999999999999876543 25567778888888888643 3444444442212221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC------------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 044422 275 NSLISMYCKCGNVEEAVYVFNNMHGK------------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLG 342 (519)
Q Consensus 275 ~~li~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 342 (519)
.-++..|-+.+-++++.-++..+... +..-....+..+.+.++.+...++.....+. .|+. .+.
T Consensus 165 ~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~~--i~~ 240 (336)
T d1b89a_ 165 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLL--LND 240 (336)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGG--HHH
T ss_pred HHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHHH--HHH
Confidence 22233444444444444444444331 2223345666677777777766666655543 3332 334
Q ss_pred HHHHH-------------HccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 343 VISSC-------------RHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 343 ll~~~-------------~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
++... .+.+++.....+++...+.| +....+++.+.|...++++.-.+.++.-
T Consensus 241 lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~~~ 306 (336)
T d1b89a_ 241 LLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDAY 306 (336)
T ss_dssp HHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 44444 44444444455555544444 3468889999999999987777766654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.11 E-value=0.0023 Score=51.37 Aligned_cols=62 Identities=5% Similarity=-0.015 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRM 265 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 265 (519)
.|+.+..+|.+.|++++|+..+++..... +.+...|..+..++...|++++|...|+.+.+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34445556666666666666666665543 334555666666666666666666666666554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.00016 Score=70.13 Aligned_cols=219 Identities=8% Similarity=-0.068 Sum_probs=108.5
Q ss_pred HHHHHHHHHhHCCCCCC-HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCCHHHHHHHHcc
Q 044422 118 KLISMHHDLHRERLKVD-ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANV-YVGSSLITLYSKCRVIIDAYKVFEE 195 (519)
Q Consensus 118 ~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 195 (519)
+|.+.|++..+. +|| ...+..+..++...+++++| ++.++.. .|+. ..++..-. +.+. .+..+.+.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~-Lw~~-~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQD-LWNH-AFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHH-HHHH-HTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHH-HHHH-HHHHHHHHHHH
Confidence 566777777652 333 23344455555555666544 5555543 2221 11221111 1111 13344444444
Q ss_pred CC----CCChhHHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCC
Q 044422 196 MP----VRNVVSWTAIIAAF--AQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFS 269 (519)
Q Consensus 196 m~----~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 269 (519)
.. .++..-....+..+ ...+.++.++..+....+.. +++...+..+...+.+.|+.+.|...+.......
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 32 23322222222222 22345555555554433322 2345567777788888888888887776655432
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044422 270 YIQVANSLISMYCKCGNVEEAVYVFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISS 346 (519)
Q Consensus 270 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 346 (519)
...++..+.+.+...+++++|...|++..+ | +..+|+.+...+...|+..+|...|.+..... +|-..++..|...
T Consensus 151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 235677788899999999999999987753 4 55789999999999999999999999888764 4566777777766
Q ss_pred HHcc
Q 044422 347 CRHG 350 (519)
Q Consensus 347 ~~~~ 350 (519)
+.+.
T Consensus 230 ~~~~ 233 (497)
T d1ya0a1 230 LSKA 233 (497)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.76 E-value=0.012 Score=46.30 Aligned_cols=93 Identities=11% Similarity=-0.003 Sum_probs=62.0
Q ss_pred HHHccCCHHHHHHHHHHHHHc--CCCc---------CHHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCCHHH
Q 044422 346 SCRHGGLVEEGKVYFDSMAKH--GLKP---------ELDHYSCVVDLLGRAGLLEEARDFIKQM--------PIYPNAVI 406 (519)
Q Consensus 346 ~~~~~g~~~~a~~~~~~m~~~--~~~p---------~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~~~ 406 (519)
.+...|++++|...|++..+. ..+. ....|+.+..+|...|++++|...+++. ...++...
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344567777777777776641 1110 1356777888888899988888877754 11222111
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 407 WEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
. ...+|..+..+|...|++++|+..|++..+.
T Consensus 98 ~------------~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 98 L------------WISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp H------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred h------------hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1236777899999999999999999997654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.55 E-value=0.01 Score=46.00 Aligned_cols=123 Identities=12% Similarity=0.013 Sum_probs=77.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----------cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 044422 313 AQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRH----------GGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLL 382 (519)
Q Consensus 313 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 382 (519)
-+.+.+++|...|+...+.. +-+...+..+-.++.. .+.+++|...|++..+.. +-+..+|..+..+|
T Consensus 8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence 34555777777777776653 2245555555555543 344577888888888743 33567787788888
Q ss_pred HHcC----CHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 044422 383 GRAG----LLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGL 452 (519)
Q Consensus 383 ~~~g----~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~ 452 (519)
...| +...+...|+.. ...+++++.++|.+..++..|... .+|.+++.+..++|+
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A--------~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLA--------TQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHH--------HHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HHcccchhhHHHHHHhHHHh--------hhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 7654 344444444432 234567788888877666655544 466777777777765
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.49 E-value=0.0014 Score=57.11 Aligned_cols=50 Identities=16% Similarity=0.048 Sum_probs=24.4
Q ss_pred cCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC
Q 044422 147 STRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197 (519)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 197 (519)
+.|+++.|...++..++.. +-|...+..+...++..|++++|...|+...
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~ 57 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 57 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445555555555554442 3344445555555555555555555554443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.45 E-value=0.0035 Score=48.85 Aligned_cols=42 Identities=12% Similarity=0.367 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcC
Q 044422 217 VDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMG 266 (519)
Q Consensus 217 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 266 (519)
+++|.+.|++..+ +.|+..+|..-+..+ ..|.+++.++.+.|
T Consensus 102 ~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 102 FDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 4666667766665 345555555444443 24455555555544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.44 E-value=0.0046 Score=53.61 Aligned_cols=52 Identities=17% Similarity=0.152 Sum_probs=30.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc
Q 044422 213 QEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRM 265 (519)
Q Consensus 213 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 265 (519)
+.|++++|+..+++..+.. +-|...+..+...++..|++++|...++...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4566666666666665543 334555666666666666666666666665554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.34 E-value=0.0039 Score=59.94 Aligned_cols=166 Identities=11% Similarity=0.026 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhHCCCCCCHHHHHHHHHHHh--cCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 117 EKLISMHHDLHRERLKVDASFLSTAVTSCG--STRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 117 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
..+++.++...+....++..-....+..+. ..+.++.+...+....+.. +++...+..+...+.+.|+.+.|...+.
T Consensus 66 ~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 144 (497)
T d1ya0a1 66 KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQS 144 (497)
T ss_dssp HHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CC
T ss_pred HHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHH
Confidence 345666666655443333332222222211 1223333333333222221 2345667788888888888888887776
Q ss_pred cCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHH
Q 044422 195 EMPVRN-VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQV 273 (519)
Q Consensus 195 ~m~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 273 (519)
....++ ..++..+...+...|++++|...|++..+.. +-+...|+.|...+...|+..+|...|.+..... +|-..+
T Consensus 145 ~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a 222 (497)
T d1ya0a1 145 SSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAA 222 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHH
Confidence 654433 2467778888999999999999999887753 3355789999999999999999999998888775 677788
Q ss_pred HHHHHHHHHhcC
Q 044422 274 ANSLISMYCKCG 285 (519)
Q Consensus 274 ~~~li~~~~~~~ 285 (519)
+..|...+.+..
T Consensus 223 ~~nL~~~~~~~~ 234 (497)
T d1ya0a1 223 STNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 888887776543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.026 Score=39.86 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=55.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKH-----GLKP-ELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAES 412 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~ 412 (519)
.+-.+...+.+.|+++.|...|++..+. ...+ ...++..+..+|.+.|++++|.+.++++
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~a-------------- 72 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL-------------- 72 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHH--------------
Confidence 3445667788889999999988887642 1112 2567888999999999999999988754
Q ss_pred hhhcCCCCchhHHHHH
Q 044422 413 RLLLEPECAATHVQLA 428 (519)
Q Consensus 413 ~~~~~~~~~~~~~~L~ 428 (519)
++++|.++.++..+.
T Consensus 73 -L~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 73 -LELDPEHQRANGNLK 87 (95)
T ss_dssp -HHHCTTCHHHHHHHH
T ss_pred -HHhCcCCHHHHHHHH
Confidence 567777777666653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=95.91 E-value=0.076 Score=41.32 Aligned_cols=95 Identities=15% Similarity=0.044 Sum_probs=65.7
Q ss_pred HHHHH--HHHHHHcCChHHHHHHHHHHHHCC-CCCC----------HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----
Q 044422 304 SWNSM--IAGYAQHGLAVRAIDLFEEMMKQR-VKPD----------AITFLGVISSCRHGGLVEEGKVYFDSMAKH---- 366 (519)
Q Consensus 304 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~~~-~~p~----------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---- 366 (519)
+|..+ ...+...|++++|+..|++..+.. -.|+ ...|+.+..+|...|+++.|...+++..+.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44544 344556788888888888776521 1111 356777888888899999888888877641
Q ss_pred -CCCcC-----HHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 367 -GLKPE-----LDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 367 -~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
...++ ...+..+..+|...|++++|.+.|++.
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~A 126 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 126 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11221 235677889999999999999998865
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.39 E-value=0.31 Score=35.47 Aligned_cols=67 Identities=12% Similarity=0.016 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCC
Q 044422 201 VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFF 268 (519)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 268 (519)
....+..++....+|+-+.-.++++.+.+.+ +|++.....+..+|.+.|+..++.+++.+.-+.|+.
T Consensus 86 se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 86 NEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 3455667788888898888888888876654 677777888888999999999998888888888754
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.01 E-value=0.13 Score=35.90 Aligned_cols=60 Identities=7% Similarity=-0.097 Sum_probs=30.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHccCCchHHHHHHHHHHHc
Q 044422 206 AIIAAFAQEWQVDMCLELYRMMRNS-----MLEPN-DFTFTSILSACTGSGALGQGRSAHCQTIRM 265 (519)
Q Consensus 206 ~li~~~~~~~~~~~a~~~~~~m~~~-----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 265 (519)
.+...+.+.|++++|...|++..+. ...++ ..++..|..++.+.|++++|...++++.+.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3445555555555555555544321 11111 234555555555666666666665555554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.50 E-value=0.35 Score=36.10 Aligned_cols=46 Identities=17% Similarity=-0.037 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhC
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTG 165 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 165 (519)
|.++|++.|++..+.|. ...+..+. .....+.++|..++....+.|
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g 53 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN 53 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc
Confidence 67888888888887763 23233332 234456777777777777666
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.07 E-value=0.7 Score=33.52 Aligned_cols=141 Identities=13% Similarity=0.031 Sum_probs=82.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 044422 211 FAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEA 290 (519)
Q Consensus 211 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 290 (519)
+.-.|..++..+++.+.... .+..-||-+|--...+-+-+...++++.+-+. .| ...++++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHH
Confidence 34456666666666665542 23445555555555555555544444444322 11 1123344444
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 044422 291 VYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK 369 (519)
Q Consensus 291 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 369 (519)
...+-.+-. +..-.+..++.+.+.|+-+.-.++++++.+. -+|+......+..+|.+.|...++.+++.+..+.|++
T Consensus 76 v~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 76 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 444333332 3334556667778888888888888886664 3566677777788888888888888888888877754
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.24 E-value=2 Score=31.55 Aligned_cols=46 Identities=4% Similarity=-0.074 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcC
Q 044422 216 QVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMG 266 (519)
Q Consensus 216 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 266 (519)
++++|+..|++..+.|- +.. +..|. .....+.++|.+.++...+.|
T Consensus 8 d~~~A~~~~~kaa~~g~-~~a--~~~l~--~~~~~~~~~a~~~~~~aa~~g 53 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-MFG--CLSLV--SNSQINKQKLFQYLSKACELN 53 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-TTH--HHHHH--TCTTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCC-hhh--hhhhc--cccccCHHHHHHHHhhhhccc
Confidence 45666777766666552 221 11121 122334455555555555444
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.65 E-value=2.5 Score=28.94 Aligned_cols=63 Identities=11% Similarity=0.077 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLIT 178 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (519)
|.=++..-++.+......|++....+.+++|.+.+|+..|..+++-.+... .++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 444566667777777888999999999999999999999999998776442 334556666554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.17 E-value=2.4 Score=28.96 Aligned_cols=63 Identities=11% Similarity=0.172 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 044422 317 LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVD 380 (519)
Q Consensus 317 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 380 (519)
+..++.+-++.+....+.|+.....+.+.+|.+.+++..|.++++-.+.. ..++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence 45566777777777778888888888888888888888888888887732 2233446665543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.99 E-value=4.4 Score=29.21 Aligned_cols=66 Identities=6% Similarity=-0.108 Sum_probs=36.3
Q ss_pred cCHHHHHHHHHHHHHcCCH---HHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCc-hhHHHHHHHHhccCCHHHHHHHHH
Q 044422 370 PELDHYSCVVDLLGRAGLL---EEARDFIKQMPIYPNAVIWEAAESRLLLEPECA-ATHVQLANLYAGVRCWDQAARVRK 445 (519)
Q Consensus 370 p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~L~~~~~~~g~~~~A~~~~~ 445 (519)
|+..+--.+..+++++.+. +++..+++++ ++.+|.+. ..+..|..+|.+.|++++|.+.++
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~---------------~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~ 97 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDI---------------YKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 97 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH---------------HHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHH---------------HhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4445545555566655443 3444444332 33344332 355556777777777777777777
Q ss_pred HHHHC
Q 044422 446 LMKDK 450 (519)
Q Consensus 446 ~m~~~ 450 (519)
...+.
T Consensus 98 ~~L~i 102 (124)
T d2pqrb1 98 TLFEH 102 (124)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 76653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.52 E-value=5.2 Score=28.83 Aligned_cols=64 Identities=6% Similarity=-0.011 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 334 KPDAITFLGVISSCRHGG---LVEEGKVYFDSMAKHGLKPE-LDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 334 ~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
.|...|--....++.++. +++++..+++++.+.+ +.+ ...+-.|.-+|.+.|++++|.+.++.+
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~ 99 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 99 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444455555543 4567888888887643 223 245556777888888999988888765
|