Citrus Sinensis ID: 044503

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MGTAKQLLISMVFLALGIVMAMMASETNAFDSGNWGRLTNIGRIEDDTEVLMPTEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQRATA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHcccccHHHHccccHHHHHHHHcccEEEHHHHcccccccccccccccccccccccccccccccHHHHcccccc
Coil and Loop (DISEMBL)
MGTAKQLLISMVFLALGIVMAMMAsetnafdsgnwgrltnigrieddtevlmptedsrrHLNAAGFISYralqgnsvpcnrrgasyyncngggptnpyrrgctaitncqrata
Flexible Loop (DISEMBL)
MGTAKQLLISMVFLALGIVMAMMASETNAFDSGNWGRLTNIGRIEDDTEVLMPTEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCngggptnpyrrgcTAITNCQRATA
Low Complexity Region (SEG)
MGTAKQLLISMVFLALGIVMAMMASETNAFDSGNWGRLTNIGRIEDDTEVLMPTEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQRATA
Disordered region (IsUnstruct)
*****QLLISMVFLALGIVMAMMASETNAFDSGNWGRLTNIGRIEDDTEVLMP****RRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITN******
Disordered Region (DISOPRED)
***AKQLLISMVFLALGIVMAMM************GRLTNIGRI****************LNAAGFISYRALQGNSVP***********************CTAITNCQ****
Disordered Region (DISEMBL)
MGTAKQLLISMVFLALGIVMAMMASETNAFDSGNWGRLTNIGRIEDDTEVLMPTEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQRATA
Disordered Region (DISPRO)
*GTAKQLLISMVFLALGIVMAMMASE*************************MPTEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQ****
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGTAKQLLISMVFLALGIVMAMMASETNAFDSGNWGRLTNIGRIEDDTEVLMPTEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQRATA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	113	2.2.26 [Sep-21-2011]
Q945T0	115	Rapid alkalinization fact	N/A	no	0.946	0.930	0.448	2e-15
Q8L9P8	116	Protein RALF-like 33 OS=A	yes	no	0.955	0.931	0.383	2e-15
Q9FZA0	110	Protein RALF-like 4 OS=Ar	no	no	0.902	0.927	0.409	1e-14
Q6NME6	110	Protein RALF-like 19 OS=A	no	no	0.823	0.845	0.447	4e-13
Q9SRY3	120	Protein RALF-like 1 OS=Ar	no	no	0.539	0.508	0.540	4e-13
Q9MA62	119	Protein RALF-like 22 OS=A	no	no	0.522	0.495	0.559	5e-13
Q9LUS7	138	Rapid alkalinization fact	no	no	0.513	0.420	0.568	9e-13
Q2HIM9	113	Protein RALF-like 31 OS=A	no	no	0.592	0.592	0.506	4e-10
Q9LK37	118	Protein RALF-like 24 OS=A	no	no	0.522	0.5	0.475	1e-07
Q9FHA6	129	Protein RALF-like 34 OS=A	no	no	0.398	0.348	0.530	4e-06

>sp|Q945T0|RALF_TOBAC Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 69/116 (59%), Gaps = 9/116 (7%)

Query: 1   MGTAKQLLISMVFLALGIVMAMMASETNAFD------SGNWGRLTNIGR-IEDDTEVLMP 53
           MG    L++ ++  A  I MA  A ++ A+D      SG  G   +IG  I ++ E  + 
Sbjct: 1   MGVPSGLILCVLIGAFFISMAA-AGDSGAYDWVMPARSGG-GCKGSIGECIAEEEEFELD 58

Query: 54  TEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQ 109
           +E +RR L    +ISY ALQ NSVPC+RRGASYYNC  G   NPY RGC+AIT C+
Sbjct: 59  SESNRRILATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRCR 114

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases. Prevents root growth and seedling development in heterologous system.
Nicotiana tabacum (taxid: 4097)

>sp|Q8L9P8|RLF33_ARATH Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 4/112 (3%)

Query: 3   TAKQLLISMVFLALGIVMAMMASETNA----FDSGNWGRLTNIGRIEDDTEVLMPTEDSR 58
           + K + I +  L +  + A + S+++      +S   G +        + E  M +E +R
Sbjct: 5   STKPVAIIIAILTVHFLFAAVTSQSSGDFVPIESKCNGTIAECSLSTAEEEFEMDSEINR 64

Query: 59  RHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQR 110
           R L    +ISY AL+ N+VPC+RRGASYYNC  G   NPY RGC+AIT C+R
Sbjct: 65  RILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 116

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZA0|RLF4_ARATH Protein RALF-like 4 OS=Arabidopsis thaliana GN=RALFL4 PE=3 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 3/105 (2%)

Query: 9   ISMVFLALGIVMAMMASETNAFDSGNWGRLTNIGRI--EDDTEVLMPTEDSRRHL-NAAG 65
           + M+ +   +++AM+A   NA        +   G I  +D+ E LM +E +RR L     
Sbjct: 3   VKMLLIFGLLILAMVAKSVNATYPLTKSCINGQGCIGEDDELESLMDSETNRRQLARGRR 62

Query: 66  FISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQR 110
           +I Y AL+ N+VPC+RRG SYY+C      NPYRRGC+AIT+C R
Sbjct: 63  YIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCYR 107

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NME6|RLF19_ARATH Protein RALF-like 19 OS=Arabidopsis thaliana GN=RALFL19 PE=3 SV=1

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 59/96 (61%), Gaps = 3/96 (3%)

Query: 21  AMMASETNAFDSGNWGRLTNIGRIEDDTEV--LMPTEDSRRHLNAA-GFISYRALQGNSV 77
           A++A   NA  +     +   G I +D E+  LM +E +RR L A   +ISY AL+ N+V
Sbjct: 15  AVVAESANATWTLTKSCVNGQGCIGEDGELDYLMDSETNRRQLAARRSYISYGALRKNNV 74

Query: 78  PCNRRGASYYNCNGGGPTNPYRRGCTAITNCQRATA 113
           PC+RRG SYY+C      NPYRRGC+ IT+C R T+
Sbjct: 75  PCSRRGRSYYDCKKRKRANPYRRGCSVITHCYRQTS 110

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRY3|RLF1_ARATH Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 42/61 (68%)

Query: 49  EVLMPTEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNC 108
           E  M +E +RR L    +ISY++L+ NSVPC+RRGASYYNC  G   NPY RGC+ I  C
Sbjct: 59  EEEMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARC 118

Query: 109 Q 109
           +
Sbjct: 119 R 119

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases. Mostly active in roots. Prevents plant growth (e.g. root and leaf length).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MA62|RLF22_ARATH Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 41/59 (69%)

Query: 52  MPTEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQR 110
             ++ SRR L    +ISY A++ NSVPC+RRGASYYNC  G   NPY RGC+ IT C+R
Sbjct: 61  FDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCRR 119

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUS7|RLF23_ARATH Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 43/58 (74%)

Query: 54  TEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQRA 111
           +E +RR L    +ISY AL+ N++PC+RRGASYYNC  G   NPY RGC+AIT C+R+
Sbjct: 81  SEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRRS 138

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). Regulates negatively brassinolide (BL)-mediated signaling pathway (e.g. BL-induced hypocotyl elongation and branching limitation).

Arabidopsis thaliana (taxid: 3702)

>sp|Q2HIM9|RLF31_ARATH Protein RALF-like 31 OS=Arabidopsis thaliana GN=RALFL31 PE=3 SV=1

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 41  IGRIEDDTEVLMPTEDSRRHLNAAG-FISYRALQGNSVPCNRRGASYYNCNGGGPTNPYR 99
           IG  ED    LMPTE SRR L A   +I Y  L+ + VPC + GASYY+C  G   N Y 
Sbjct: 41  IGEDED----LMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSGQ-ANSYS 95

Query: 100 RGCTAITNCQRAT 112
           RGC  IT C R T
Sbjct: 96  RGCDTITRCARDT 108

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK37|RLF24_ARATH Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 53  PTEDSRR-HLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQRA 111
           P+E SRR  +    +ISY  L+ + VPC + GASYY C  G   N Y RGC+ IT C R 
Sbjct: 54  PSEISRRVMMMRKQYISYETLRRDMVPCQKPGASYYACRSGQ-ANAYNRGCSVITRCARD 112

Query: 112 T 112
           T
Sbjct: 113 T 113

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHA6|RLF34_ARATH Protein RALF-like 34 OS=Arabidopsis thaliana GN=RALFL34 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 4/49 (8%)

Query: 66  FISYRALQGNSVPCN-RRGASYYNCN---GGGPTNPYRRGCTAITNCQR 110
           +ISY AL  N VPC  R G SYY  N     GP +PY RGC++IT C+R
Sbjct: 81  YISYGALSANRVPCPPRSGRSYYTHNCFRARGPVHPYSRGCSSITRCRR 129

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
388490514	126	unknown [Medicago truncatula]	0.884	0.793	0.443	2e-17
154269428	126	rapid alkalinization factor precursor [L	0.920	0.825	0.465	4e-17
357478769	139	Rapid alkalinization factor [Medicago tr	0.876	0.712	0.438	1e-16
358346090	111	RALF [Medicago truncatula] gi|355503040|	0.884	0.900	0.421	2e-16
356564045	120	PREDICTED: uncharacterized protein LOC10	0.884	0.833	0.449	6e-16
359493652	195	PREDICTED: uncharacterized protein LOC10	0.805	0.466	0.477	1e-15
356521855	118	PREDICTED: uncharacterized protein LOC10	0.973	0.932	0.415	2e-15
42374767	115	rapid alkalinization factor preproprotei	0.955	0.939	0.443	6e-15
356572986	129	PREDICTED: uncharacterized protein LOC10	0.884	0.775	0.455	7e-15
116782892	122	unknown [Picea sitchensis]	1.0	0.926	0.385	1e-14

>gi|388490514|gb|AFK33323.1| unknown [Medicago truncatula]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 69/115 (60%), Gaps = 15/115 (13%)

Query: 11  MVFLALGIVMAMMASETNAF------------DSGNWGRLTNIGRI---EDDTEVLMPTE 55
           ++F  L + +A+ +S T  F            DSG  G +     +   EDD+E +M +E
Sbjct: 12  LLFSILALHVALSSSSTLDFTDNQLSSFFLPSDSGCRGSIAGCSLLAGDEDDSEFMMDSE 71

Query: 56  DSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQR 110
            +RR L A  +ISY AL+ N+VPC+RRGASYYNC  G   NPYRRGC+AIT C+R
Sbjct: 72  SNRRILAARRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 126

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|154269428|gb|ABS72341.1| rapid alkalinization factor precursor [Litchi chinensis]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/116 (46%), Positives = 68/116 (58%), Gaps = 12/116 (10%)

Query: 7   LLISMVFLALGI-VMAMMASETNAFD-----------SGNWGRLTNIGRIEDDTEVLMPT 54
           L+IS V LA+ + V A  A + NA             SG+ G    +G  E D E  M +
Sbjct: 11  LVISAVILAVHVAVSASSAVDFNAGHQFGFFPMKPECSGSIGECATVGDEELDLEFEMDS 70

Query: 55  EDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQR 110
           E +RR L  + +ISY AL+ NSVPC+RRGASYYNC  G   NPY RGC+AIT C+R
Sbjct: 71  ESNRRILATSQYISYGALRRNSVPCSRRGASYYNCQTGAQANPYSRGCSAITRCRR 126

Source: Litchi chinensis

Species: Litchi chinensis

Genus: Litchi

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478769|ref|XP_003609670.1| Rapid alkalinization factor [Medicago truncatula] gi|355510725|gb|AES91867.1| Rapid alkalinization factor [Medicago truncatula]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 68/114 (59%), Gaps = 15/114 (13%)

Query: 11  MVFLALGIVMAMMASETNAF------------DSGNWGRLTNIGRI---EDDTEVLMPTE 55
           ++F  L + +A+ +S T  F            DSG  G +     +   EDD+E +M +E
Sbjct: 12  LLFSILALHVALSSSSTLDFTDNQLSSFFLPSDSGCRGSIAECSLLAGDEDDSEFMMDSE 71

Query: 56  DSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQ 109
            +RR L A  +ISY AL+ N+VPC+RRGASYYNC  G   NPYRRGC+AIT C+
Sbjct: 72  SNRRILAARRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCR 125

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346090|ref|XP_003637105.1| RALF [Medicago truncatula] gi|355503040|gb|AES84243.1| RALF [Medicago truncatula]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 11  MVFLALGIVMAMMASETNAFDSGNWGRLTNIGRIEDDTEVLMPTEDSRRHLNAAG--FIS 68
           ++F  L +++AM+++E +      +  +     I DD E+LM +E +RR L      +IS
Sbjct: 8   IMFFFLAMLIAMVSAEASKVHDFTFASVRVGDLIGDDNEMLMDSESNRRTLAGRKRRYIS 67

Query: 69  YRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQR 110
           Y AL+ N++PC ++G SYY+CN  G  NPYRRGCTAIT+C R
Sbjct: 68  YGALKANNIPCGQKGQSYYDCNARGQANPYRRGCTAITHCAR 109

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564045|ref|XP_003550267.1| PREDICTED: uncharacterized protein LOC100775931 [Glycine max]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/109 (44%), Positives = 64/109 (58%), Gaps = 9/109 (8%)

Query: 11  MVFLALGIVMAMMASETNAFD-------SGNWGRLTNIGRI--EDDTEVLMPTEDSRRHL 61
           +V   L + +A  +S T   D       SG  G +     +  +DDTE LM +E +RR L
Sbjct: 12  LVCTILSVHVAQSSSSTLDLDTFFLPLKSGCRGSVAECSLLAGDDDTEFLMESESNRRIL 71

Query: 62  NAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQR 110
               +ISY AL+ N+VPC+RRGASYYNC  G   NPY RGC+AIT C+R
Sbjct: 72  AGRSYISYGALRRNTVPCSRRGASYYNCRPGAQANPYSRGCSAITRCRR 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493652|ref|XP_003634644.1| PREDICTED: uncharacterized protein LOC100853046 [Vitis vinifera]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/109 (47%), Positives = 62/109 (56%), Gaps = 18/109 (16%)

Query: 21  AMMASETNAFDSGNWGRLTNI------GR----------IEDDTEVLMPTEDSRRHLNAA 64
           AM+ S    F   NWG LT+       GR          I+   E +M +E SRR L   
Sbjct: 87  AMVESAAALFSEANWG-LTHFAGADLGGRRACNGLVGDCIDPYAETMMDSEVSRRTLAQG 145

Query: 65  G-FISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQRAT 112
           G FISY AL+ N+VPCNRRG SYYNC  GG  NPY+RGC+ IT+C R T
Sbjct: 146 GKFISYGALKKNNVPCNRRGRSYYNCRKGGRANPYQRGCSTITHCARYT 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521855|ref|XP_003529566.1| PREDICTED: uncharacterized protein LOC100780330 [Glycine max]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 66/118 (55%), Gaps = 8/118 (6%)

Query: 1   MGTAKQLLISMVFLALGIVMAMMASETNAFD-------SGNWGRLTNIGRIE-DDTEVLM 52
           MG++      ++   L + +A  +S T   D       SG  G +     +  DD E LM
Sbjct: 1   MGSSTFCAFFLLCAILAVHVAQSSSSTLDLDAFFLPLKSGCRGSVAECSLLAGDDAEFLM 60

Query: 53  PTEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQR 110
            +E +RR L    +ISY AL+ N+VPC+RRGASYYNC  G   NPY RGC+AIT C+R
Sbjct: 61  ESESNRRILAGRSYISYGALRRNTVPCSRRGASYYNCRPGAQANPYSRGCSAITRCRR 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42374767|gb|AAS13437.1| rapid alkalinization factor preproprotein [Nicotiana attenuata]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 7/115 (6%)

Query: 1   MGTAKQLLISMVFLALGIVMAMMASETNAFD---SGNWGRLTN--IGR-IEDDTEVLMPT 54
           MG    L++ ++  A  I MA  A ++ A+D       GR  N  IG  + ++ E  + +
Sbjct: 1   MGVPSGLILCVLIGAFFISMAT-AGDSGAYDWVMPARSGRGCNGSIGECMAEEDEFELDS 59

Query: 55  EDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQ 109
           E +RR L    +ISY ALQ NSVPC+RRGASYYNC  G   NPY RGC+AIT C+
Sbjct: 60  ESNRRILATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRCR 114

Source: Nicotiana attenuata

Species: Nicotiana attenuata

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572986|ref|XP_003554646.1| PREDICTED: uncharacterized protein LOC100818577 [Glycine max]

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 63/101 (62%), Gaps = 1/101 (0%)

Query: 10  SMVFLALGIVMAMMASETNAFDSGNWG-RLTNIGRIEDDTEVLMPTEDSRRHLNAAGFIS 68
           S +FLA+   + ++ S +   D+G  G  +T I  +  + E  + +E SRR L    +IS
Sbjct: 28  SWLFLAICATLLLLLSSSPTADAGALGMEMTWIPSMPMEEEFQLDSEISRRILATTKYIS 87

Query: 69  YRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQ 109
           Y ALQ N+VPC+RRGASYYNC  G   NPY RGC+AIT C+
Sbjct: 88  YGALQRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCR 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116782892|gb|ABK22709.1| unknown [Picea sitchensis]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 9/122 (7%)

Query: 1   MGTAKQLLISMVFLALGIVMAMM----ASETNAFDSGNWGRLT-----NIGRIEDDTEVL 51
           MG A     S V L   +   ++     SE +AF++    +       +IG   +D E+ 
Sbjct: 1   MGKAVFFFFSGVLLVCVLSTVLIEPVAGSEMDAFEALWVSKPRPRCEGSIGECFEDEEMQ 60

Query: 52  MPTEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQRA 111
           M +E +RR L    ++SY AL+ NSVPC+RRG+SYYNC      NPY+R CT IT C R+
Sbjct: 61  MDSEINRRFLAGRTYVSYGALRSNSVPCSRRGSSYYNCGSTSQANPYKRSCTQITRCARS 120

Query: 112 TA 113
           T+
Sbjct: 121 TS 122

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
UNIPROTKB|Q945T0	115	RALF "Rapid alkalinization fac	0.946	0.930	0.448	9.5e-18
TAIR|locus:504955964	110	RALFL19 "ralf-like 19" [Arabid	0.902	0.927	0.433	3.7e-16
TAIR|locus:2130724	116	RALFL33 "ralf-like 33" [Arabid	0.955	0.931	0.383	9.8e-16
TAIR|locus:2032195	110	RALFL4 "ralf-like 4" [Arabidop	0.867	0.890	0.461	1.6e-15
TAIR|locus:2079787	119	RALFL22 "ralf-like 22" [Arabid	0.743	0.705	0.459	4.2e-15
TAIR|locus:2089323	138	RALF23 "rapid alkalinization f	0.690	0.565	0.506	4.2e-15
TAIR|locus:2024730	120	RALF1 "rapid alkalinization fa	0.654	0.616	0.481	3e-14
TAIR|locus:505006366	118	RALFL24 "ralf-like 24" [Arabid	0.911	0.872	0.381	1.7e-11
TAIR|locus:2129261	113	RALFL31 "ralf-like 31" [Arabid	0.575	0.575	0.507	1.7e-11
TAIR|locus:2155553	129	RALFL34 "ralf-like 34" [Arabid	0.398	0.348	0.551	9.7e-09

UNIPROTKB|Q945T0 RALF "Rapid alkalinization factor" [Nicotiana tabacum (taxid:4097)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 52/116 (44%), Positives = 69/116 (59%)

Query:     1 MGTAKQLLISMVFLALGIVMAMMASETNAFD------SGNWGRLTNIGR-IEDDTEVLMP 53
             MG    L++ ++  A  I MA  A ++ A+D      SG  G   +IG  I ++ E  + 
Sbjct:     1 MGVPSGLILCVLIGAFFISMAA-AGDSGAYDWVMPARSGG-GCKGSIGECIAEEEEFELD 58

Query:    54 TEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQ 109
             +E +RR L    +ISY ALQ NSVPC+RRGASYYNC  G   NPY RGC+AIT C+
Sbjct:    59 SESNRRILATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRCR 114

GO:0004871 "signal transducer activity" evidence=IDA

GO:0005179 "hormone activity" evidence=IDA

GO:0019722 "calcium-mediated signaling" evidence=IDA

TAIR|locus:504955964 RALFL19 "ralf-like 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 46/106 (43%), Positives = 66/106 (62%)

Query:    12 VFLALGIV-MAMMASETNAFDSGNWGRLTNIGRIEDDTEV--LMPTEDSRRHLNAA-GFI 67
             + L LG++ +A++A   NA  +     +   G I +D E+  LM +E +RR L A   +I
Sbjct:     5 ILLILGLLTLAVVAESANATWTLTKSCVNGQGCIGEDGELDYLMDSETNRRQLAARRSYI 64

Query:    68 SYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQRATA 113
             SY AL+ N+VPC+RRG SYY+C      NPYRRGC+ IT+C R T+
Sbjct:    65 SYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHCYRQTS 110

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2130724 RALFL33 "ralf-like 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 43/112 (38%), Positives = 63/112 (56%)

Query:     3 TAKQLLISMVFLALGIVMAMMASETNA----FDSGNWGRLTNIGRIEDDTEVLMPTEDSR 58
             + K + I +  L +  + A + S+++      +S   G +        + E  M +E +R
Sbjct:     5 STKPVAIIIAILTVHFLFAAVTSQSSGDFVPIESKCNGTIAECSLSTAEEEFEMDSEINR 64

Query:    59 RHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQR 110
             R L    +ISY AL+ N+VPC+RRGASYYNC  G   NPY RGC+AIT C+R
Sbjct:    65 RILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 116

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2032195 RALFL4 "ralf-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 48/104 (46%), Positives = 63/104 (60%)

Query:    12 VFLALGI-VMAMMASETNAFDSGNWGRLTNIGRI-EDDT-EVLMPTEDSRRHLNAAG--F 66
             + L  G+ ++AM+A   NA        +   G I EDD  E LM +E +RR L A G  +
Sbjct:     5 MLLIFGLLILAMVAKSVNATYPLTKSCINGQGCIGEDDELESLMDSETNRRQL-ARGRRY 63

Query:    67 ISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQR 110
             I Y AL+ N+VPC+RRG SYY+C      NPYRRGC+AIT+C R
Sbjct:    64 IGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCYR 107

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2079787 RALFL22 "ralf-like 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 40/87 (45%), Positives = 54/87 (62%)

Query:    24 ASETNAFDSGNWGRLTNIGRIEDDTEVLMPTEDSRRHLNAAGFISYRALQGNSVPCNRRG 83
             A  ++ F SG  G +     I ++ E+   ++ SRR L    +ISY A++ NSVPC+RRG
Sbjct:    36 AGSSSLF-SGCTGSIAEC--IAEEEEMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRG 92

Query:    84 ASYYNCNGGGPTNPYRRGCTAITNCQR 110
             ASYYNC  G   NPY RGC+ IT C+R
Sbjct:    93 ASYYNCQRGAQANPYSRGCSTITRCRR 119

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2089323 RALF23 "rapid alkalinization factor 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 40/79 (50%), Positives = 51/79 (64%)

Query:    33 GNWGRLTNIGRIEDDTEVLMPTEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGG 92
             G+ G L   G  E   E  M +E +RR L    +ISY AL+ N++PC+RRGASYYNC  G
Sbjct:    61 GDGGDLF-YGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRG 119

Query:    93 GPTNPYRRGCTAITNCQRA 111
                NPY RGC+AIT C+R+
Sbjct:   120 AQANPYSRGCSAITRCRRS 138

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

GO:0045926 "negative regulation of growth" evidence=IMP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2024730 RALF1 "rapid alkalinization factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 38/79 (48%), Positives = 50/79 (63%)

Query:    32 SGNWGRLTN-IGRIEDDTEVLMPTEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCN 90
             SG  G +   IG  E++    M +E +RR L    +ISY++L+ NSVPC+RRGASYYNC 
Sbjct:    45 SGCHGSIAECIGAEEEE----MDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQ 100

Query:    91 GGGPTNPYRRGCTAITNCQ 109
              G   NPY RGC+ I  C+
Sbjct:   101 NGAQANPYSRGCSKIARCR 119

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0019722 "calcium-mediated signaling" evidence=IDA

TAIR|locus:505006366 RALFL24 "ralf-like 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 42/110 (38%), Positives = 60/110 (54%)

Query:     9 ISMVFLALGIVMAMMA-SETNAFDSGNW---GRLTNIGRI-EDDTEVLMPTEDSRR-HLN 62
             +++V+L+L  +   ++ S T    S N      L   G I E++ E +MP+E SRR  + 
Sbjct:     5 LALVYLSLLCLQTHLSISVTVPIPSVNGEIDAMLNRNGVIGEEEGEEMMPSEISRRVMMM 64

Query:    63 AAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQRAT 112
                +ISY  L+ + VPC + GASYY C  G   N Y RGC+ IT C R T
Sbjct:    65 RKQYISYETLRRDMVPCQKPGASYYACRSG-QANAYNRGCSVITRCARDT 113

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2129261 RALFL31 "ralf-like 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 34/67 (50%), Positives = 40/67 (59%)

Query:    47 DTEVLMPTEDSRRHLNAAG-FISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAI 105
             + E LMPTE SRR L A   +I Y  L+ + VPC + GASYY+C  G   N Y RGC  I
Sbjct:    43 EDEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSG-QANSYSRGCDTI 101

Query:   106 TNCQRAT 112
             T C R T
Sbjct:   102 TRCARDT 108

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2155553 RALFL34 "ralf-like 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 27/49 (55%), Positives = 32/49 (65%)

Query:    66 FISYRALQGNSVPCN-RRGASYY--NC-NGGGPTNPYRRGCTAITNCQR 110
             +ISY AL  N VPC  R G SYY  NC    GP +PY RGC++IT C+R
Sbjct:    81 YISYGALSANRVPCPPRSGRSYYTHNCFRARGPVHPYSRGCSSITRCRR 129

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0006949 "syncytium formation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L9P8	RLF33_ARATH	No assigned EC number	0.3839	0.9557	0.9310	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	113
pfam05498	66	pfam05498, RALF, Rapid ALkalinization Factor (RALF	6e-22
PLN03222	119	PLN03222, PLN03222, rapid alkalinization factor 23	3e-19
PLN03221	137	PLN03221, PLN03221, rapid alkalinization factor 23	5e-18

>gnl|CDD|218610 pfam05498, RALF, Rapid ALkalinization Factor (RALF)

 Score = 81.3 bits (201), Expect = 6e-22
 Identities = 39/66 (59%), Positives = 48/66 (72%)

Query: 45  EDDTEVLMPTEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTA 104
           E++  V+M +   RR L A  +ISY AL+ NSVPC+RRGASYYNC  G P NPY RGC+A
Sbjct: 1   EEEALVVMDSPAGRRVLAARRYISYGALRRNSVPCSRRGASYYNCKPGAPANPYSRGCSA 60

Query: 105 ITNCQR 110
           IT C+R
Sbjct: 61  ITRCRR 66

RALF, a 5-kDa ubiquitous polypeptide in plants, arrests root growth and development. Length = 66

>gnl|CDD|178761 PLN03222, PLN03222, rapid alkalinization factor 23-like protein; Provisional

 Score = 76.3 bits (187), Expect = 3e-19
 Identities = 45/115 (39%), Positives = 62/115 (53%), Gaps = 7/115 (6%)

Query: 3   TAKQLLISMVFLALGIVMAMMASETNAF-------DSGNWGRLTNIGRIEDDTEVLMPTE 55
           + K   I +  L +  + A + S++  F       DS   G +        + E  M +E
Sbjct: 5   STKPGAIIIAILTVHFLFAAVTSQSTGFSGDFMPIDSKCNGTIAECSLSTAEEEFEMDSE 64

Query: 56  DSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQR 110
            +RR L    +ISY AL+ N+VPC+RRGASYYNC  G   NPY RGC+AIT C+R
Sbjct: 65  INRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 119

Length = 119

>gnl|CDD|178760 PLN03221, PLN03221, rapid alkalinization factor 23; Provisional

 Score = 73.6 bits (180), Expect = 5e-18
 Identities = 36/66 (54%), Positives = 45/66 (68%)

Query: 45  EDDTEVLMPTEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTA 104
           E   E  M +E +RR L    +ISY AL+ N++PC+RRGASYYNC  G   NPY RGC+A
Sbjct: 72  EMGAEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSA 131

Query: 105 ITNCQR 110
           IT C+R
Sbjct: 132 ITRCRR 137

Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
PLN03222	119	rapid alkalinization factor 23-like protein; Provi	100.0
PLN03221	137	rapid alkalinization factor 23; Provisional	100.0
PF05498	66	RALF: Rapid ALkalinization Factor (RALF) ; InterPr	99.95
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	91.72

>PLN03222 rapid alkalinization factor 23-like protein; Provisional

Probab=100.00  E-value=7.5e-37  Score=221.94  Aligned_cols=98  Identities=42%  Similarity=0.749  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHhhhcccc-CCCC-C-CCccc-e-eccc--CcccccCCCccccccccCCCccccccccCCCCCCCCCCCC
Q 044503           13 FLALGIVMAMMASETNAF-DSGN-W-GRLTN-I-GRIE--DDTEVLMPTEDSRRHLNAAGFISYRALQGNSVPCNRRGAS   85 (113)
Q Consensus        13 ~~~~~~~la~~~~~~~~~-~~~~-~-~~C~g-v-ec~~--~eeE~~m~se~~RR~L~~~~yIsY~aL~~~~vpC~~~g~s   85 (113)
                      +|.+.+++|.+.+...+. +++- . ..|+| + ||+.  +|+|++||||++||+|++++||||+||++|++||+++|+|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~Gsi~EC~~~~~e~e~~mdSe~sRR~L~~~rYISYgALrrd~vPCsrrG~S   94 (119)
T PLN03222         15 ILTVHFLFAAVTSQSTGFSGDFMPIDSKCNGTIAECSLSTAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGAS   94 (119)
T ss_pred             hhHHHHHHHHhhcccccccccccCCCCcCCCCHHHhhcccccchhccccHHHHHHHhhcCeecHHHhcCCCCCCCCCCCC
Confidence            344555666676665443 2221 1 46999 8 9985  4778999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCcccccccC
Q 044503           86 YYNCNGGGPTNPYRRGCTAITNCQR  110 (113)
Q Consensus        86 Y~nC~~~~~aNPYtRGCs~itrCrr  110 (113)
                      ||||++++|+|||+|||++||||||
T Consensus        95 YynC~~~~~ANPY~RGCs~ITrCrR  119 (119)
T PLN03222         95 YYNCRRGAQANPYSRGCSAITRCRR  119 (119)
T ss_pred             ccccCCCCCCCCCCCCchhhccccC
Confidence            9999998999999999999999997

>PLN03221 rapid alkalinization factor 23; Provisional

Probab=100.00  E-value=3.2e-35  Score=217.41  Aligned_cols=75  Identities=48%  Similarity=0.866  Sum_probs=68.8

Q ss_pred             CCccc-e-ecc-------------cCcc---cccCCCccccccccCCCccccccccCCCCCCCCCCCCccCCCCCCCCCC
Q 044503           36 GRLTN-I-GRI-------------EDDT---EVLMPTEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNP   97 (113)
Q Consensus        36 ~~C~g-v-ec~-------------~~ee---E~~m~se~~RR~L~~~~yIsY~aL~~~~vpC~~~g~sY~nC~~~~~aNP   97 (113)
                      ..|.| + ||+             +++|   |++||||++||+|++++||||+||++|++||+++|+|||||++++|+||
T Consensus        45 ~~C~GsiaEC~~~~~~~~d~e~~~g~~~~~~e~~MdSE~sRR~L~~~rYISYgALrrd~vPCsrrG~SYynC~~~~pANP  124 (137)
T PLN03221         45 TECRGTIAECSVSAALGDDGDLFYGGGEMGAEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANP  124 (137)
T ss_pred             CcccCCHHHHhhhhccccccccccccchhhhhhhcccHHHHHHHhcCCccCHHHhccCCCCCCCCCCCccccCCCCCCCC
Confidence            45999 8 996             2222   7899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccC
Q 044503           98 YRRGCTAITNCQR  110 (113)
Q Consensus        98 YtRGCs~itrCrr  110 (113)
                      |+|||++||||||
T Consensus       125 Y~RGCs~ITRCrR  137 (137)
T PLN03221        125 YSRGCSAITRCRR  137 (137)
T ss_pred             CCCCcccccccCC
Confidence            9999999999997

>PF05498 RALF: Rapid ALkalinization Factor (RALF) ; InterPro: IPR008801 RALF, a 5 kDa ubiquitous polypeptide in plants, arrests root growth and development

Probab=99.95  E-value=3.4e-29  Score=165.90  Aligned_cols=65  Identities=54%  Similarity=1.031  Sum_probs=62.0

Q ss_pred             CcccccCCCccccccccCCCccccccccCCCCCCCCCCCCccCCCCCCCCCCCCCCCcccccccC
Q 044503           46 DDTEVLMPTEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQR  110 (113)
Q Consensus        46 ~eeE~~m~se~~RR~L~~~~yIsY~aL~~~~vpC~~~g~sY~nC~~~~~aNPYtRGCs~itrCrr  110 (113)
                      +|+|+.|+||++||+|++++||||+||++|++||.++|.+|++|.+++|+|||+|||++||||||
T Consensus         2 ee~~~~~~s~~~~R~~a~~~yIsYgaL~~~~~pc~~~g~~~~~c~~~~paNpY~RGC~~~~rCrr   66 (66)
T PF05498_consen    2 EEEEVVMESEASRRILAARRYISYGALRRDRVPCSPRGCSYYNCCPRQPANPYSRGCSKITRCRR   66 (66)
T ss_pred             hhHHhhhhhHHHHHHHhcCCeecchhccCCCCCCCcccCCCcccCCCCCCCCCCCCCCccccCCC
Confidence            46789999999999999989999999999999999999999999888999999999999999997

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=91.72  E-value=0.23  Score=34.83  Aligned_cols=20  Identities=25%  Similarity=0.416  Sum_probs=10.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHH
Q 044503            1 MGTAKQLLISMVFLALGIVMA   21 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~la   21 (113)
                      |. +|.++++.+|||++|+|+
T Consensus         1 Ma-SK~~llL~l~LA~lLlis   20 (95)
T PF07172_consen    1 MA-SKAFLLLGLLLAALLLIS   20 (95)
T ss_pred             Cc-hhHHHHHHHHHHHHHHHH
Confidence            77 555555544555544443

Some of them may be involved in resistance to environmental stress [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00