Citrus Sinensis ID: 044530

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
ccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccEEEEEEcccccEEccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcc
ccHHHHHHcHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccEEEccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHccHHHHHHHHHHcc
grysvkrfrkaqcPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVinsgpredatrigsagvvrrqavdisplrrVNQALYLLTTGARESAFRNIKTIAECLADELINaakgssnsyaikKKDEIERVAKANR
grysvkrfrkaqcpiverltnslmmhgRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPRedatrigsagvvrrqavdisplrrvNQALYLLTTGARESAFRNIKTIAECLADELInaakgssnsyaikkkdeiERVAKANR
GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
********RKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINA************************
*R***KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK***
GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKA**
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query151 2.2.26 [Sep-21-2011]
O65731197 40S ribosomal protein S5 N/A no 1.0 0.766 0.960 2e-81
Q9ZUT9207 40S ribosomal protein S5- yes no 1.0 0.729 0.940 3e-80
O24111154 40S ribosomal protein S5 N/A no 1.0 0.980 0.960 6e-80
P51427207 40S ribosomal protein S5- no no 1.0 0.729 0.933 7e-80
P46782204 40S ribosomal protein S5 yes no 1.0 0.740 0.854 4e-74
Q5E988204 40S ribosomal protein S5 yes no 1.0 0.740 0.854 4e-74
P97461204 40S ribosomal protein S5 yes no 1.0 0.740 0.847 2e-73
Q7RVI1213 40S ribosomal protein S5 N/A no 1.0 0.708 0.834 6e-73
Q24186228 40S ribosomal protein S5a yes no 1.0 0.662 0.834 9e-72
P24050204 40S ribosomal protein S5 yes no 1.0 0.740 0.834 9e-72
>sp|O65731|RS5_CICAR 40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1 Back     alignment and function desciption
 Score =  300 bits (768), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 145/151 (96%), Positives = 150/151 (99%)

Query: 1   GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIV 60
           GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAV I+KHAMEIIHLLTDQNPIQVIV
Sbjct: 47  GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIV 106

Query: 61  DAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECL 120
           DAV+NSGPREDATRIGSAGVVRRQAVDISPLRRVNQA+YLLTTGARE+AFRNIK+IAECL
Sbjct: 107 DAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECL 166

Query: 121 ADELINAAKGSSNSYAIKKKDEIERVAKANR 151
           ADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 167 ADELINAAKGSSNSYAIKKKDEIERVAKANR 197

Cicer arietinum (taxid: 3827)
>sp|Q9ZUT9|RS51_ARATH 40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1 Back     alignment and function description
>sp|O24111|RS5_NICPL 40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1 Back     alignment and function description
>sp|P51427|RS52_ARATH 40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2 Back     alignment and function description
>sp|P46782|RS5_HUMAN 40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4 Back     alignment and function description
>sp|Q5E988|RS5_BOVIN 40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3 Back     alignment and function description
>sp|P97461|RS5_MOUSE 40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3 Back     alignment and function description
>sp|Q7RVI1|RS5_NEUCR 40S ribosomal protein S5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rps-5 PE=3 SV=2 Back     alignment and function description
>sp|Q24186|RS5A_DROME 40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=2 SV=1 Back     alignment and function description
>sp|P24050|RS5_RAT 40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query151
313586551209 40S ribosomal protein S5A [Hevea brasili 1.0 0.722 0.980 1e-80
313586553209 40S ribosomal protein S5B [Hevea brasili 1.0 0.722 0.980 1e-80
168002020196 predicted protein [Physcomitrella patens 1.0 0.770 0.973 2e-80
225430619204 PREDICTED: 40S ribosomal protein S5 isof 1.0 0.740 0.980 2e-80
346466423216 hypothetical protein [Amblyomma maculatu 1.0 0.699 0.973 2e-80
255581578211 40S ribosomal protein S5, putative [Rici 1.0 0.715 0.973 3e-80
116784084198 unknown [Picea sitchensis] gi|116786244| 1.0 0.762 0.966 3e-80
225441583208 PREDICTED: 40S ribosomal protein S5 isof 1.0 0.725 0.966 4e-80
192910720195 40S ribosomal protein S5 [Elaeis guineen 1.0 0.774 0.966 1e-79
413968532219 40S ribosomal protein S5 [Solanum tubero 1.0 0.689 0.966 1e-79
>gi|313586551|gb|ADR71286.1| 40S ribosomal protein S5A [Hevea brasiliensis] Back     alignment and taxonomy information
 Score =  303 bits (777), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 148/151 (98%), Positives = 150/151 (99%)

Query: 1   GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIV 60
           GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAV IVKHAMEIIHLLTDQNPIQVIV
Sbjct: 59  GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIV 118

Query: 61  DAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECL 120
           DAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQA+YLLTTGARE+AFRNIKTIAECL
Sbjct: 119 DAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECL 178

Query: 121 ADELINAAKGSSNSYAIKKKDEIERVAKANR 151
           ADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 179 ADELINAAKGSSNSYAIKKKDEIERVAKANR 209

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|313586553|gb|ADR71287.1| 40S ribosomal protein S5B [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|168002020|ref|XP_001753712.1| predicted protein [Physcomitrella patens subsp. patens] gi|168031661|ref|XP_001768339.1| predicted protein [Physcomitrella patens subsp. patens] gi|168033776|ref|XP_001769390.1| predicted protein [Physcomitrella patens subsp. patens] gi|168033896|ref|XP_001769450.1| predicted protein [Physcomitrella patens subsp. patens] gi|168064752|ref|XP_001784323.1| predicted protein [Physcomitrella patens subsp. patens] gi|162664154|gb|EDQ50885.1| predicted protein [Physcomitrella patens subsp. patens] gi|162679310|gb|EDQ65759.1| predicted protein [Physcomitrella patens subsp. patens] gi|162679370|gb|EDQ65819.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680517|gb|EDQ66953.1| predicted protein [Physcomitrella patens subsp. patens] gi|162695119|gb|EDQ81464.1| predicted protein [Physcomitrella patens subsp. patens] Back     alignment and taxonomy information
>gi|225430619|ref|XP_002266736.1| PREDICTED: 40S ribosomal protein S5 isoform 1 [Vitis vinifera] gi|296085149|emb|CBI28644.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|346466423|gb|AEO33056.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
>gi|255581578|ref|XP_002531594.1| 40S ribosomal protein S5, putative [Ricinus communis] gi|223528790|gb|EEF30797.1| 40S ribosomal protein S5, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|116784084|gb|ABK23207.1| unknown [Picea sitchensis] gi|116786244|gb|ABK24039.1| unknown [Picea sitchensis] gi|116793442|gb|ABK26748.1| unknown [Picea sitchensis] gi|224285738|gb|ACN40584.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|225441583|ref|XP_002281550.1| PREDICTED: 40S ribosomal protein S5 isoform 2 [Vitis vinifera] gi|225441585|ref|XP_002281538.1| PREDICTED: 40S ribosomal protein S5 isoform 1 [Vitis vinifera] gi|297739774|emb|CBI29956.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|192910720|gb|ACF06468.1| 40S ribosomal protein S5 [Elaeis guineensis] Back     alignment and taxonomy information
>gi|413968532|gb|AFW90603.1| 40S ribosomal protein S5 [Solanum tuberosum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query151
TAIR|locus:2049862207 RPS5B "ribosomal protein 5B" [ 1.0 0.729 0.940 4.8e-71
TAIR|locus:2081546207 RPS5A "ribosomal protein 5A" [ 1.0 0.729 0.933 7.7e-71
ZFIN|ZDB-GENE-060825-73201 zgc:153322 "zgc:153322" [Danio 1.0 0.751 0.860 2.2e-66
UNIPROTKB|Q5E988204 RPS5 "40S ribosomal protein S5 1.0 0.740 0.854 7.4e-66
UNIPROTKB|E2RIQ8204 RPS5 "Uncharacterized protein" 1.0 0.740 0.854 7.4e-66
UNIPROTKB|P46782204 RPS5 "40S ribosomal protein S5 1.0 0.740 0.854 7.4e-66
UNIPROTKB|F2Z5E6204 RPS5 "Uncharacterized protein" 1.0 0.740 0.854 7.4e-66
MGI|MGI:1097682204 Rps5 "ribosomal protein S5" [M 1.0 0.740 0.847 2.5e-65
ZFIN|ZDB-GENE-020419-12204 rps5 "ribosomal protein S5" [D 1.0 0.740 0.827 1.8e-64
RGD|3601204 Rps5 "ribosomal protein S5" [R 1.0 0.740 0.834 4.7e-64
TAIR|locus:2049862 RPS5B "ribosomal protein 5B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 142/151 (94%), Positives = 149/151 (98%)

Query:     1 GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIV 60
             GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAV IVKHAMEIIHLL+D NPIQVI+
Sbjct:    57 GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVII 116

Query:    61 DAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECL 120
             DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQA++LLTTGARE+AFRNIKTIAECL
Sbjct:   117 DAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECL 176

Query:   121 ADELINAAKGSSNSYAIKKKDEIERVAKANR 151
             ADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct:   177 ADELINAAKGSSNSYAIKKKDEIERVAKANR 207
GO:0003723 "RNA binding" evidence=IEA
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015935 "small ribosomal subunit" evidence=IEA
GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2081546 RPS5A "ribosomal protein 5A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060825-73 zgc:153322 "zgc:153322" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E988 RPS5 "40S ribosomal protein S5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RIQ8 RPS5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P46782 RPS5 "40S ribosomal protein S5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5E6 RPS5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1097682 Rps5 "ribosomal protein S5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020419-12 rps5 "ribosomal protein S5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|3601 Rps5 "ribosomal protein S5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A4FWF1RS7_METM5No assigned EC number0.49341.00.8031yesno
Q54MA6RS5_DICDINo assigned EC number0.73501.00.7947yesno
Q9YAU8RS7_AERPENo assigned EC number0.55621.00.7365yesno
B1YC67RS7_PYRNVNo assigned EC number0.52311.00.6741yesno
P35026RS7_SULSONo assigned EC number0.54301.00.7823yesno
P46782RS5_HUMANNo assigned EC number0.85431.00.7401yesno
O65731RS5_CICARNo assigned EC number0.96021.00.7664N/Ano
P26783RS5_YEASTNo assigned EC number0.78801.00.6711yesno
Q976B0RS7_SULTONo assigned EC number0.54301.00.7783yesno
Q6LXI3RS7_METMPNo assigned EC number0.51311.00.8031yesno
P49041RS5_CAEELNo assigned EC number0.82781.00.7190yesno
O15587RS5_ENTHINo assigned EC number0.62580.97350.9932N/Ano
A1RSA1RS7_PYRILNo assigned EC number0.54301.00.6741yesno
Q8TXJ3RS7_METKANo assigned EC number0.51651.00.7664yesno
Q8SS72RS5_ENCCUNo assigned EC number0.55310.93370.6778yesno
Q9P3T6RS5B_SCHPONo assigned EC number0.80131.00.7438yesno
Q08364RS5_PODCANo assigned EC number0.80131.00.7190N/Ano
A6VGV4RS7_METM7No assigned EC number0.49341.00.8031yesno
A0B563RS7_METTPNo assigned EC number0.44371.00.8162yesno
Q24186RS5A_DROMENo assigned EC number0.83441.00.6622yesno
P17198RS7_SULACNo assigned EC number0.52981.00.7743yesno
P97461RS5_MOUSENo assigned EC number0.84761.00.7401yesno
Q97CD9RS7_THEVONo assigned EC number0.45691.00.8206yesno
Q464Z2RS7_METBFNo assigned EC number0.45691.00.8162yesno
Q5E988RS5_BOVINNo assigned EC number0.85431.00.7401yesno
B8D6G4RS7_DESK1No assigned EC number0.51651.00.7626yesno
Q9ZUT9RS51_ARATHNo assigned EC number0.94031.00.7294yesno
P24050RS5_RATNo assigned EC number0.83441.00.7401yesno
O93631RS7_METBUNo assigned EC number0.43041.00.8118yesno
Q8ZYK5RS7_PYRAENo assigned EC number0.51651.00.6771yesno
O27130RS7_METTHNo assigned EC number0.48320.98670.8010yesno
Q9HLY1RS7_THEACNo assigned EC number0.44371.00.8206yesno
Q7RVI1RS5_NEUCRNo assigned EC number0.83441.00.7089N/Ano
A9A9U5RS7_METM6No assigned EC number0.49341.00.8031yesno
O14277RS5A_SCHPONo assigned EC number0.80131.00.7438yesno
O28386RS7_ARCFUNo assigned EC number0.50991.00.7783yesno
A6UV45RS7_META3No assigned EC number0.46051.00.8031yesno
P51427RS52_ARATHNo assigned EC number0.93371.00.7294nono
O24111RS5_NICPLNo assigned EC number0.96021.00.9805N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query151
PTZ00091193 PTZ00091, PTZ00091, 40S ribosomal protein S5; Prov 1e-103
TIGR01028186 TIGR01028, S7_S5_E_A, ribosomal protein S7(archaea 1e-84
PRK04027195 PRK04027, PRK04027, 30S ribosomal protein S7P; Rev 5e-71
COG0049148 COG0049, RpsG, Ribosomal protein S7 [Translation, 1e-52
pfam00177149 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e 3e-46
CHL00053155 CHL00053, rps7, ribosomal protein S7 1e-16
PRK05302156 PRK05302, PRK05302, 30S ribosomal protein S7; Vali 3e-16
TIGR01029154 TIGR01029, rpsG_bact, ribosomal protein S7, bacter 1e-13
>gnl|CDD|185439 PTZ00091, PTZ00091, 40S ribosomal protein S5; Provisional Back     alignment and domain information 
 Score =  292 bits (749), Expect = e-103
 Identities = 126/151 (83%), Positives = 139/151 (92%)

Query: 1   GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIV 60
           GRY  KRFRKAQCPIVERL NSLM HGRNNGKKL+AV IVKHA EIIHLLTD+NP+QV+V
Sbjct: 43  GRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRIVKHAFEIIHLLTDKNPLQVLV 102

Query: 61  DAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECL 120
           DAV N GPRED+TR+GS GVVRRQAVD+SPLRRVNQA+YL+  GARE+AFRNIKTIAECL
Sbjct: 103 DAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAECL 162

Query: 121 ADELINAAKGSSNSYAIKKKDEIERVAKANR 151
           ADE+INA+K SSNSYAIKKKDE+ERVAKANR
Sbjct: 163 ADEIINASKESSNSYAIKKKDEVERVAKANR 193

Length = 193
>gnl|CDD|211618 TIGR01028, S7_S5_E_A, ribosomal protein S7(archaeal)/S5(eukaryotic) Back     alignment and domain information
>gnl|CDD|235204 PRK04027, PRK04027, 30S ribosomal protein S7P; Reviewed Back     alignment and domain information
>gnl|CDD|223127 COG0049, RpsG, Ribosomal protein S7 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215771 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e Back     alignment and domain information
>gnl|CDD|176994 CHL00053, rps7, ribosomal protein S7 Back     alignment and domain information
>gnl|CDD|235398 PRK05302, PRK05302, 30S ribosomal protein S7; Validated Back     alignment and domain information
>gnl|CDD|233238 TIGR01029, rpsG_bact, ribosomal protein S7, bacterial/organelle Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 151
PRK04027195 30S ribosomal protein S7P; Reviewed 100.0
PTZ00091193 40S ribosomal protein S5; Provisional 100.0
TIGR01028186 S7_S5_E_A ribosomal protein S7(archaeal)/S5(eukary 100.0
COG0049148 RpsG Ribosomal protein S7 [Translation, ribosomal 100.0
TIGR01029154 rpsG_bact ribosomal protein S7, bacterial/organell 100.0
PRK05302156 30S ribosomal protein S7; Validated 100.0
PF00177148 Ribosomal_S7: Ribosomal protein S7p/S5e; InterPro: 100.0
CHL00053155 rps7 ribosomal protein S7 100.0
KOG3291208 consensus Ribosomal protein S7 [Translation, ribos 100.0
>PRK04027 30S ribosomal protein S7P; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=5e-57  Score=355.94  Aligned_cols=151  Identities=55%  Similarity=0.785  Sum_probs=147.5

Q ss_pred             CCccccccCCCCChHHHHHHHHhhcCCCccChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcccceeeeccCCe
Q 044530            1 GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGV   80 (151)
Q Consensus         1 ~~~~~k~~~~~~~~~v~k~iN~lM~~~~~~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~n~~P~~e~~~i~~gG~   80 (151)
                      |||++|+|.++++++|++|||.||++|.++|||++|++|||+||++|+..|++||++||++||+|++|.+|++++++||.
T Consensus        45 gr~~~k~f~k~~~~iVerLiN~lM~~~~n~GKK~~A~~Iv~~AfeiI~~kT~~nPiqVl~~AI~N~~P~~Ev~~~r~GG~  124 (195)
T PRK04027         45 GRHAKKQFGKAEVPIVERLINKLMRTERNTGKKQKAYNIVKEAFEIIEKRTKQNPIQVLVDAIENAAPREETTRIKYGGI  124 (195)
T ss_pred             ccccccCcccccCHHHHHHHHHHhccCccCCcHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCeEEEEEecCCE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeeecChhHHHHHHHHHHHHHHHhhccCCcCcHHHHHHHHHHHHHcCCCchhhHHhHHHHHHHHHhcC
Q 044530           81 VRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR  151 (151)
Q Consensus        81 ~~~vPv~i~~~rr~~lAikWii~~a~~~~~r~~~~~~~~La~Eii~A~~~~g~~~aikkK~e~hk~A~aNR  151 (151)
                      +|||||+|+|.||+++||+||+++|++++++++++|+++||+|||||++++|.|+||+||||+||||+|||
T Consensus       125 tyqvpVdV~p~Rr~~lAirwI~~~ar~r~fr~~ksm~e~LA~ElidAa~~~~~g~AikKKeE~hRmAeANr  195 (195)
T PRK04027        125 SYPKAVDVSPQRRVDLALRFIAEGARQASFKNKKSIEEALAEEIIAAANNDPKSYAVRKKEEIERVAKSAR  195 (195)
T ss_pred             EEEeeeecCHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHcCCCCCceeecHHHHHHHHHhcC
Confidence            99999999999999999999999999988888999999999999999999765579999999999999998

>PTZ00091 40S ribosomal protein S5; Provisional Back     alignment and domain information
>TIGR01028 S7_S5_E_A ribosomal protein S7(archaeal)/S5(eukaryotic) Back     alignment and domain information
>COG0049 RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01029 rpsG_bact ribosomal protein S7, bacterial/organelle Back     alignment and domain information
>PRK05302 30S ribosomal protein S7; Validated Back     alignment and domain information
>PF00177 Ribosomal_S7: Ribosomal protein S7p/S5e; InterPro: IPR023798 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>CHL00053 rps7 ribosomal protein S7 Back     alignment and domain information
>KOG3291 consensus Ribosomal protein S7 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query151
3iz6_F200 Localization Of The Small Subunit Ribosomal Protein 4e-81
2zkq_g204 Structure Of A Mammalian Ribosomal 40s Subunit With 4e-75
3izb_F225 Localization Of The Small Subunit Ribosomal Protein 8e-69
3jyv_G186 Structure Of The 40s Rrna And Proteins And PE TRNA 1e-68
1s1h_G150 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 7e-68
3zey_2190 High-resolution Cryo-electron Microscopy Structure 2e-65
2xzm_G200 Crystal Structure Of The Eukaryotic 40s Ribosomal S 8e-56
3j0l_T192 Core Of Mammalian 80s Pre-Ribosome In Complex With 1e-55
3j20_H215 Promiscuous Behavior Of Proteins In Archaeal Riboso 1e-27
1iqv_A218 Crystal Structure Analysis Of The Archaebacterial R 6e-27
1i94_G155 Crystal Structures Of The Small Ribosomal Subunit W 3e-10
1fjg_G156 Structure Of The Thermus Thermophilus 30s Ribosomal 3e-10
1fka_G151 Structure Of Functionally Activated Small Ribosomal 4e-10
1rss_A151 Ribosomal Protein S7 From Thermus Thermophilus Leng 4e-10
3gty_S149 Promiscuous Substrate Recognition In Folding And As 7e-09
3bbn_G155 Homology Model For The Spinach Chloroplast 30s Subu 1e-08
1eg0_D146 Fitting Of Components With Known Structure Into An 2e-08
1qd7_F135 Partial Model For 30s Ribosomal Subunit Length = 13 3e-08
1x18_F154 Contact Sites Of Era Gtpase On The Thermus Thermoph 8e-08
1p6g_G178 Real Space Refined Coordinates Of The 30s Subunit F 1e-05
1vs5_G179 Crystal Structure Of The Bacterial Ribosome From Es 1e-05
3sfs_G156 Crystal Structure Of Release Factor Rf3 Trapped In 2e-05
2gy9_G137 Structure Of The 30s Subunit Of A Pre-Translocation 2e-05
3fih_G150 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 2e-05
3ofo_G151 Crystal Structure Of The E. Coli Ribosome Bound To 2e-05
>pdb|3IZ6|F Chain F, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 200 Back     alignment and structure 
Iteration: 1

 Score =  296 bits (757), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 143/151 (94%), Positives = 147/151 (97%)
Query: 1   GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIV 60
           GRYS KRFRKAQCP+VERLTNSLMMHGRNNGKK+MAV IVKHAMEIIHLLTD NPIQVIV
Sbjct: 50  GRYSAKRFRKAQCPLVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIV 109
Query: 61  DAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECL 120
           DA+INSGPREDATRIGSAG VRRQAVDISPLRRVNQA+YLLTTGARESAFRNIKTIAECL
Sbjct: 110 DAIINSGPREDATRIGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECL 169
Query: 121 ADELINAAKGSSNSYAIKKKDEIERVAKANR 151
           ADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 170 ADELINAAKGSSNSYAIKKKDEIERVAKANR 200
>pdb|2ZKQ|GG Chain g, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 204 Back     alignment and structure
>pdb|3IZB|F Chain F, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 225 Back     alignment and structure
>pdb|3JYV|G Chain G, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 186 Back     alignment and structure
>pdb|1S1H|G Chain G, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i. Length = 150 Back     alignment and structure
>pdb|3ZEY|2 Chain 2, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 190 Back     alignment and structure
>pdb|2XZM|G Chain G, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 200 Back     alignment and structure
>pdb|3J0L|T Chain T, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 192 Back     alignment and structure
>pdb|3J20|H Chain H, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 215 Back     alignment and structure
>pdb|1IQV|A Chain A, Crystal Structure Analysis Of The Archaebacterial Ribosomal Protein S7 Length = 218 Back     alignment and structure
>pdb|1I94|G Chain G, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 155 Back     alignment and structure
>pdb|1FJG|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 156 Back     alignment and structure
>pdb|1FKA|G Chain G, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution Length = 151 Back     alignment and structure
>pdb|1RSS|A Chain A, Ribosomal Protein S7 From Thermus Thermophilus Length = 151 Back     alignment and structure
>pdb|3GTY|S Chain S, Promiscuous Substrate Recognition In Folding And Assembly Activities Of The Trigger Factor Chaperone Length = 149 Back     alignment and structure
>pdb|3BBN|G Chain G, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 155 Back     alignment and structure
>pdb|1QD7|F Chain F, Partial Model For 30s Ribosomal Subunit Length = 135 Back     alignment and structure
>pdb|1X18|F Chain F, Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s Subunit Length = 154 Back     alignment and structure
>pdb|1P6G|G Chain G, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 178 Back     alignment and structure
>pdb|1VS5|G Chain G, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 179 Back     alignment and structure
>pdb|3SFS|G Chain G, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome Length = 156 Back     alignment and structure
>pdb|2GY9|G Chain G, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 137 Back     alignment and structure
>pdb|3FIH|G Chain G, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 150 Back     alignment and structure
>pdb|3OFO|G Chain G, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 30s Subunit Of The First 70s Ribosome. Length = 151 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query151
3u5c_F225 RP14, S2, YS8, 40S ribosomal protein S5; translati 3e-85
2xzm_G200 Ribosomal protein S7 containing protein; ribosome, 2e-82
2zkq_g204 40S ribosomal protein S5E; protein-RNA complex, 40 2e-82
1iqv_A218 Ribosomal protein S7; RNA-binding, decoding center 4e-80
3bbn_G155 Ribosomal protein S7; small ribosomal subunit, spi 3e-18
1hus_A155 Ribosomal protein S7; RNA-binding protein, decodin 5e-17
3gty_S149 TF, 30S ribosomal protein S7; chaperone-client com 6e-17
1rss_A151 Ribosomal protein S7; RNA-binding, translation; 1. 7e-17
3i1m_G179 30S ribosomal protein S7; ribosome structure, prot 9e-17
3r8n_G151 30S ribosomal protein S7; protein biosynthesis, RN 8e-16
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225 Back     alignment and structure
 Score =  248 bits (634), Expect = 3e-85
 Identities = 119/151 (78%), Positives = 137/151 (90%)

Query: 1   GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIV 60
           GRY+ KRFRKAQCPI+ERLTNSLMM+GRNNGKKL AV I+KH ++II++LTDQNPIQV+V
Sbjct: 75  GRYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVV 134

Query: 61  DAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECL 120
           DA+ N+GPRED TR+G  G  RRQAVD+SPLRRVNQA+ LLT GARE+AFRNIKTIAE L
Sbjct: 135 DAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETL 194

Query: 121 ADELINAAKGSSNSYAIKKKDEIERVAKANR 151
           A+ELINAAKGSS SYAIKKKDE+ERVAK+NR
Sbjct: 195 AEELINAAKGSSTSYAIKKKDELERVAKSNR 225
>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T 3j0l_T Length = 200 Back     alignment and structure
>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protei complex; 8.70A {Canis familiaris} Length = 204 Back     alignment and structure
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1 Length = 218 Back     alignment and structure
>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 155 Back     alignment and structure
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1 Length = 155 Back     alignment and structure
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} Length = 149 Back     alignment and structure
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 3mr8_G ... Length = 151 Back     alignment and structure
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 2qal_G* 1p6g_G 1p87_G 2aw7_G 2avy_G ... Length = 179 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query151
3u5c_F225 RP14, S2, YS8, 40S ribosomal protein S5; translati 100.0
2xzm_G200 Ribosomal protein S7 containing protein; ribosome, 100.0
2zkq_g204 40S ribosomal protein S5E; protein-RNA complex, 40 100.0
1iqv_A218 Ribosomal protein S7; RNA-binding, decoding center 100.0
3r8n_G151 30S ribosomal protein S7; protein biosynthesis, RN 100.0
1rss_A151 Ribosomal protein S7; RNA-binding, translation; 1. 100.0
3gty_S149 TF, 30S ribosomal protein S7; chaperone-client com 100.0
1hus_A155 Ribosomal protein S7; RNA-binding protein, decodin 100.0
3i1m_G179 30S ribosomal protein S7; ribosome structure, prot 100.0
3bbn_G155 Ribosomal protein S7; small ribosomal subunit, spi 100.0
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Back     alignment and structure
Probab=100.00  E-value=1.2e-57  Score=364.92  Aligned_cols=151  Identities=79%  Similarity=1.152  Sum_probs=148.3

Q ss_pred             CCccccccCCCCChHHHHHHHHhhcCCCccChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcccceeeeccCCe
Q 044530            1 GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGV   80 (151)
Q Consensus         1 ~~~~~k~~~~~~~~~v~k~iN~lM~~~~~~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~n~~P~~e~~~i~~gG~   80 (151)
                      |||++|||++++||++++|||+||+||+++|||++|++|||.||++|+..|++||++||++||+|++|.++++++++||.
T Consensus        75 gr~~~krf~K~~~piv~rliN~LM~~~~~~GKKs~A~~Ivy~AfeiI~~kT~~nPl~Vl~~AI~Nv~P~vesrRvg~gG~  154 (225)
T 3u5c_F           75 GRYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGA  154 (225)
T ss_dssp             CCCSSSTTGGGGSCHHHHHHHHHSCSGGGSSCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHTTSCSEEEECCCSSSS
T ss_pred             CCccccCCCCCCCcHHHHHHHHHHhcCccCCcHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHhCCCCeeEEEeccCCE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeeecChhHHHHHHHHHHHHHHHhhccCCcCcHHHHHHHHHHHHHcCCCchhhHHhHHHHHHHHHhcC
Q 044530           81 VRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR  151 (151)
Q Consensus        81 ~~~vPv~i~~~rr~~lAikWii~~a~~~~~r~~~~~~~~La~Eii~A~~~~g~~~aikkK~e~hk~A~aNR  151 (151)
                      +||||++|+|.||+++||+||+++|+++++|++++|+++||+|||||++|+|+|++|+||||+||||+|||
T Consensus       155 tyqVPVeV~p~Rr~~LAiRWIi~aark~~~R~~ksmaerLA~ELidAa~~~G~s~AiKKKee~HRmAeANR  225 (225)
T 3u5c_F          155 ARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR  225 (225)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHTC
T ss_pred             EEEEeeecCHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHhcC
Confidence            99999999999999999999999999988888999999999999999999998789999999999999998
>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T 3j0l_T Back     alignment and structure
>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protei complex; 8.70A {Canis familiaris} Back     alignment and structure
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1 Back     alignment and structure
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 3mr8_G ... Back     alignment and structure
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} Back     alignment and structure
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1 Back     alignment and structure
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 4gaq_G* 4gas_G* 2qal_G* 1p6g_G 1p87_G ... Back     alignment and structure
>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 151
d1iqva_201 a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyroc 3e-56
d1rssa_145 a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermo 1e-34
d1husa_139 a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stear 4e-33
d2qalg1150 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherich 7e-31
>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201 Back     information, alignment and structure

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  172 bits (438), Expect = 3e-56
 Identities = 71/167 (42%), Positives = 95/167 (56%), Gaps = 16/167 (9%)

Query: 1   GRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVLIVKHAM 44
           GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A 
Sbjct: 35  GRHAKKHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAF 94

Query: 45  EIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTG 104
           +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISPLRR++ AL  +  G
Sbjct: 95  KIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALG 154

Query: 105 ARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 151
           A    +R   + AE LA+E+I AA     SYA  KK EIER+A+++R
Sbjct: 155 ASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 201
>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure
>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stearothermophilus [TaxId: 1422]} Length = 139 Back     information, alignment and structure
>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli [TaxId: 562]} Length = 150 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query151
d1iqva_201 Ribosomal protein S7 {Archaeon Pyrococcus horikosh 100.0
d2qalg1150 Ribosomal protein S7 {Escherichia coli [TaxId: 562 100.0
d1husa_139 Ribosomal protein S7 {Bacillus stearothermophilus 100.0
d1rssa_145 Ribosomal protein S7 {Thermus thermophilus [TaxId: 100.0
>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=4.7e-55  Score=344.27  Aligned_cols=151  Identities=47%  Similarity=0.622  Sum_probs=134.5

Q ss_pred             CCccccccCCCCChHHHHHHHHhhcCCCc----------------cChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 044530            1 GRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVI   64 (151)
Q Consensus         1 ~~~~~k~~~~~~~~~v~k~iN~lM~~~~~----------------~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~   64 (151)
                      |||+.|+|.++++|+|++|||.||.+|++                +|||++|++||++||++|+..|++||++||.+||+
T Consensus        35 gr~~~~~f~k~~~~iVERlin~lM~~G~~~~~~~~~~~~~~h~~~~GKK~~A~kIv~~A~~iI~~kt~~nPl~Vl~~AI~  114 (201)
T d1iqva_          35 GRHAKKHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIE  114 (201)
T ss_dssp             ------------CBHHHHHHHHHHTTCCC-----------------CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             cchhhhhcccccchHHHHHHHHhhhccccccccccccchhccccCCccHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHH
Confidence            89999999999999999999999999976                79999999999999999999999999999999999


Q ss_pred             hcCcccceeeeccCCeeEEEeeecChhHHHHHHHHHHHHHHHhhccCCcCcHHHHHHHHHHHHHcCCCchhhHHhHHHHH
Q 044530           65 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIE  144 (151)
Q Consensus        65 n~~P~~e~~~i~~gG~~~~vPv~i~~~rr~~lAikWii~~a~~~~~r~~~~~~~~La~Eii~A~~~~g~~~aikkK~e~h  144 (151)
                      |++|.+|++++++||.+||||++++|.||+++||+||+++|+++++++.++|+++||+|||+|++|+|.|+||+||||+|
T Consensus       115 N~~P~~Ev~~~r~GG~~yqvPv~vsp~Rr~~lAirwI~~~ar~~~~r~~ks~~e~LA~Eii~Aa~~~~ks~AikKKeE~h  194 (201)
T d1iqva_         115 NAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIE  194 (201)
T ss_dssp             HHSCSCEEEEEEETTEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             hhcceEEEEEEecCCcccccCeeeCHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCCcceEeehHHHH
Confidence            99999999999999999999999999999999999999999998878889999999999999999998778999999999


Q ss_pred             HHHHhcC
Q 044530          145 RVAKANR  151 (151)
Q Consensus       145 k~A~aNR  151 (151)
                      |+|++||
T Consensus       195 k~A~aNR  201 (201)
T d1iqva_         195 RIAESSR  201 (201)
T ss_dssp             HHHHHCC
T ss_pred             HHHHhcC
Confidence            9999998
>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure